Psyllid ID: psy8700

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM
Secondary Structure (PSIPRED)
cccccccEEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEccEEEEEEEEEcccccccHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHccccHHHHHccccccccccccccEEc
Secondary Structure Prediction (SSPRO)
cccHHHEEEEEEEccccccHHHHHHHHHHcccccccccccEEEEEEEEEEccEEEEEEEEEEcccccccHHHHHHHHHccEEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcHHHHHHccccHHHHHHHHHHHccEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEEc
Coil and Loop (DISEMBL)
mpeqsndyRVVVFGAGGVGKSSLVLRFVKgtfresyiptieDTYRQVISCNknictlqitdttgshqfpamqrlsiskGHAFILVYSCTSRQSLEELRPIWEVIRETkgganelasipimlvgnkcdetenrevsAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM
Flexible Loop (DISEMBL)
MPEQSNDYRVVvfgaggvgksslvLRFVKgtfresyiptiedTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETkgganelasipimlvgnkcdETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNislqlekkgqlkgtrklkekcsvm
Low Complexity Region (SEG)
MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM
Disordered region (IsUnstruct)
*******YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC****************AKMWGCHFMETSAKTNHNVKELFAELLNLE****************************
Disordered Region (DISOPRED)
*****ND*RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN***********************KEKCSVM
Disordered Region (DISEMBL)
MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM
Disordered Region (DISPRO)
*PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNI***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETxxxxxxxxxxxxxxxxxxxxxRNISLQLEKKGQLKGTRKLKEKCSVM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q5PR73	199	GTP-binding protein Di-Ra	yes	N/A	0.985	0.989	0.782	6e-87
Q95KD9	199	GTP-binding protein Di-Ra	N/A	N/A	0.985	0.989	0.772	3e-86
Q96HU8	199	GTP-binding protein Di-Ra	yes	N/A	0.985	0.989	0.772	3e-86
Q5R6S2	199	GTP-binding protein Di-Ra	yes	N/A	0.985	0.989	0.767	1e-85
O95057	198	GTP-binding protein Di-Ra	no	N/A	0.98	0.989	0.717	9e-73
Q91Z61	198	GTP-binding protein Di-Ra	no	N/A	0.98	0.989	0.707	1e-71
O95661	229	GTP-binding protein Di-Ra	no	N/A	0.955	0.834	0.489	5e-39
P18613	186	Ras-related protein rapA	yes	N/A	0.905	0.973	0.394	2e-36
Q9YH37	184	Ras-related protein Rap-1	N/A	N/A	0.905	0.983	0.389	9e-36
P22123	184	Ras-related protein O-Kre	N/A	N/A	0.905	0.983	0.384	1e-35

>sp|Q5PR73|DIRA2_MOUSE GTP-binding protein Di-Ras2 OS=Mus musculus GN=Diras2 PE=2 SV=1

 Score =  319 bits (818), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 158/202 (78%), Positives = 172/202 (85%), Gaps = 5/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct: 1   MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct: 61  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIM 117

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDE+ NREV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct: 118 LVGNKCDESPNREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query: 181 LE--KKGQLKGTRKLKEKCSVM 200
           ++  K  Q K   KLK KC VM
Sbjct: 178 IDGKKSKQQKRKEKLKGKCVVM 199

Displays low GTPase activity and exist predominantly in the GTP-bound form.
Mus musculus (taxid: 10090)

>sp|Q95KD9|DIRA2_MACFA GTP-binding protein Di-Ras2 OS=Macaca fascicularis GN=DIRAS2 PE=2 SV=1

 Score =  317 bits (813), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 156/202 (77%), Positives = 172/202 (85%), Gaps = 5/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct: 1   MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct: 61  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DMESIPIM 117

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDE+ +REV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct: 118 LVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query: 181 LE--KKGQLKGTRKLKEKCSVM 200
           ++  K  Q K   KLK KC +M
Sbjct: 178 IDGKKSKQQKRKEKLKGKCVIM 199

Displays low GTPase activity and exist predominantly in the GTP-bound form.

Macaca fascicularis (taxid: 9541)

>sp|Q96HU8|DIRA2_HUMAN GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIRAS2 PE=1 SV=1

 Score =  317 bits (812), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 156/202 (77%), Positives = 172/202 (85%), Gaps = 5/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct: 1   MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct: 61  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIM 117

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDE+ +REV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct: 118 LVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query: 181 LE--KKGQLKGTRKLKEKCSVM 200
           ++  K  Q K   KLK KC +M
Sbjct: 178 IDGKKSKQQKRKEKLKGKCVIM 199

Displays low GTPase activity and exist predominantly in the GTP-bound form.

Homo sapiens (taxid: 9606)

>sp|Q5R6S2|DIRA2_PONAB GTP-binding protein Di-Ras2 OS=Pongo abelii GN=DIRAS2 PE=2 SV=1

 Score =  315 bits (807), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 155/202 (76%), Positives = 172/202 (85%), Gaps = 5/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYR+VISC+K+ICTLQIT
Sbjct: 1   MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRRVISCDKSICTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct: 61  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIM 117

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDE+ +REV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct: 118 LVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query: 181 LE--KKGQLKGTRKLKEKCSVM 200
           ++  K  Q K   KLK KC +M
Sbjct: 178 IDGKKSKQQKRKEKLKGKCVIM 199

Displays low GTPase activity and exist predominantly in the GTP-bound form.

Pongo abelii (taxid: 9601)

>sp|O95057|DIRA1_HUMAN GTP-binding protein Di-Ras1 OS=Homo sapiens GN=DIRAS1 PE=1 SV=1

 Score =  272 bits (696), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 145/202 (71%), Positives = 170/202 (84%), Gaps = 6/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR++YIPTIEDTYRQVISC+K++CTLQIT
Sbjct: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILV+S TS+QSLEEL PI+++I + KG   +   IP+M
Sbjct: 61  DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---IPVM 117

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDET+ REV   E +A A+ W C FMETSAK N+NVKELF ELL LE  RN+SL 
Sbjct: 118 LVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLN 176

Query: 181 LEKK--GQLKGTRKLKEKCSVM 200
           ++ K  G+ K T ++K KC++M
Sbjct: 177 IDGKRSGKQKRTDRVKGKCTLM 198

Displays low GTPase activity and exist predominantly in the GTP-bound form.

Homo sapiens (taxid: 9606)

>sp|Q91Z61|DIRA1_MOUSE GTP-binding protein Di-Ras1 OS=Mus musculus GN=Diras1 PE=2 SV=1

 Score =  269 bits (687), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 143/202 (70%), Positives = 168/202 (83%), Gaps = 6/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR++YIPTIEDTYRQVISC+K++CTLQIT
Sbjct: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILV+S TS+QSL+EL PI+++I + KG   +   IPIM
Sbjct: 61  DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLDELSPIYKLIVQIKGSVED---IPIM 117

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDET+ REV   E +A A+ W C FMETSAK N+NVKELF ELL LE  R++SL 
Sbjct: 118 LVGNKCDETQ-REVHTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRSVSLS 176

Query: 181 LEKKGQLKGTR--KLKEKCSVM 200
           ++ K   K  R  ++K KC++M
Sbjct: 177 VDGKRSSKQKRADRIKGKCALM 198

Displays low GTPase activity and exist predominantly in the GTP-bound form.

Mus musculus (taxid: 10090)

>sp|O95661|DIRA3_HUMAN GTP-binding protein Di-Ras3 OS=Homo sapiens GN=DIRAS3 PE=1 SV=1

 Score =  160 bits (405), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 96/196 (48%), Positives = 130/196 (66%), Gaps = 5/196 (2%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           DYRVVV G  GVGKS+L+ ++  G FR  Y+PTIE+TY Q++ C+  + +L ITD+    
Sbjct: 37  DYRVVVVGTAGVGKSTLLHKWASGNFRHEYLPTIENTYCQLLGCSHGVLSLHITDSKSGD 96

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
              A+QR  I++GHAF+LVYS T +++LEEL+  +E+I + KG  N L   PI+LVGNK 
Sbjct: 97  GNRALQRHVIARGHAFVLVYSVTKKETLEELKAFYELICKIKG--NNLHKFPIVLVGNKS 154

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ-LEKKG 185
           D+T +REV+  +G   A  W C FME SAKT+ NV+ELF  LLN +K     LQ  EKK 
Sbjct: 155 DDT-HREVALNDGATCAMEWNCAFMEISAKTDVNVQELFHMLLNYKKKPTTGLQEPEKKS 213

Query: 186 QLKG-TRKLKEKCSVM 200
           Q+   T KL +KC +M
Sbjct: 214 QMPNTTEKLLDKCIIM 229

Homo sapiens (taxid: 9606)

>sp|P18613|RAPA_DICDI Ras-related protein rapA OS=Dictyostelium discoideum GN=rapA PE=1 SV=1

 Score =  152 bits (383), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 118/195 (60%), Gaps = 14/195 (7%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           ++++VV G+GGVGKS+L ++FV+G F E Y PTIED+YR+ +  + N C L+I DT G+ 
Sbjct: 5   EFKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDSNQCMLEILDTAGTE 64

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF AM+ L +  G  F+LVYS  S  +  EL  + E I   K    +   +P++LVGNKC
Sbjct: 65  QFTAMRDLYMKNGQGFVLVYSIISNSTFNELPDLREQILRVK----DCEDVPMVLVGNKC 120

Query: 127 DETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKG 185
           D  + R +S  +GE  A+ +G C+F+E SAK   NV+++F  L+          Q+ +K 
Sbjct: 121 DLHDQRVISTEQGEELARKFGDCYFLEASAKNKVNVEQIFYNLIR---------QINRKN 171

Query: 186 QLKGTRKLKEKCSVM 200
            +    K K KC+++
Sbjct: 172 PVGPPSKAKSKCALL 186

Positively regulates phagocytosis and negatively regulates macropinocytosis. May be involved in the activation of guanylyl cyclase during the response to hyperosmotic conditions. Overexpressing cells generate alterations in cell shape and contractile responses.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9YH37|RAP1B_CYPCA Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1

 Score =  149 bits (377), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 117/195 (60%), Gaps = 14/195 (7%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV G+GGVGKS+L ++FV+G F E Y PTIED+YR+ +  +   C L+I DT G+ 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF AM+ L +  G  F LVYS T++ +  +L+ + E I   K    +   +PI+LVGNKC
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK----DTDDVPIILVGNKC 118

Query: 127 DETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKG 185
           D  + R V   +G+  A+ W  C F+E+SAK+  NV E+F +L+          Q+ +K 
Sbjct: 119 DLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVR---------QINRKT 169

Query: 186 QLKGTRKLKEKCSVM 200
            + G  + K  C ++
Sbjct: 170 PVPGKARKKSTCQLL 184

Cyprinus carpio (taxid: 7962)

>sp|P22123|RAPA_DIPOM Ras-related protein O-Krev OS=Diplobatis ommata PE=2 SV=1

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 120/195 (61%), Gaps = 14/195 (7%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV G+GGVGKS+L ++FV+G F E Y PTIED+YR+ +  +   C L+I DT G+ 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQPCMLEILDTAGTE 62

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF AM+ L +  G  F LVYS T++ +  +L+ + E I   K    +   +P++LVGNKC
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK----DTEDVPMILVGNKC 118

Query: 127 DETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKG 185
           D  + R V   +G+  A+ W  C F+E+SAK+  NV E+F +L+          Q+ +K 
Sbjct: 119 DLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVR---------QINRKA 169

Query: 186 QLKGTRKLKEKCSVM 200
            ++  +K K +C+++
Sbjct: 170 PVEKCKKKKSQCTLL 184

Discopyge ommata (taxid: 7785)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
193695378	197	PREDICTED: GTP-binding protein Di-Ras2-l	0.985	1.0	0.88	5e-91
242007408	214	GTP-binding protein Di-Ras2, putative [P	0.99	0.925	0.828	4e-86
71725385	199	GTP-binding protein Di-Ras2 [Mus musculu	0.985	0.989	0.782	3e-85
354482814	199	PREDICTED: GTP-binding protein Di-Ras2-l	0.985	0.989	0.782	3e-85
344297586	199	PREDICTED: GTP-binding protein Di-Ras2-l	0.985	0.989	0.782	5e-85
350592244	199	PREDICTED: GTP-binding protein Di-Ras2-l	0.985	0.989	0.777	7e-85
301767466	199	PREDICTED: GTP-binding protein Di-Ras2-l	0.985	0.989	0.782	9e-85
62286628	199	RecName: Full=GTP-binding protein Di-Ras	0.985	0.989	0.772	1e-84
348552146	199	PREDICTED: GTP-binding protein Di-Ras2-l	0.985	0.989	0.777	2e-84
395844631	199	PREDICTED: GTP-binding protein Di-Ras2 [	0.985	0.989	0.777	2e-84

>gi|193695378|ref|XP_001951176.1| PREDICTED: GTP-binding protein Di-Ras2-like [Acyrthosiphon pisum]

 Score =  338 bits (868), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 176/200 (88%), Positives = 189/200 (94%), Gaps = 3/200 (1%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT
Sbjct: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLS+SKGHAFILVYSCTSRQSLEELRPIW+VI+ETK GA+EL SIPIM
Sbjct: 61  DTTGSHQFPAMQRLSMSKGHAFILVYSCTSRQSLEELRPIWQVIKETK-GASELPSIPIM 119

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDE + REVSA EG+AEA+ WGCHFMETSAKTNHNVKELF ELLNLEKNRNISLQ
Sbjct: 120 LVGNKCDENDTREVSAEEGDAEARRWGCHFMETSAKTNHNVKELFQELLNLEKNRNISLQ 179

Query: 181 LEKKGQLKGTRKLKEKCSVM 200
            EKK  ++G RK++EKC++M
Sbjct: 180 PEKKS-MRG-RKIREKCALM 197

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007408|ref|XP_002424532.1| GTP-binding protein Di-Ras2, putative [Pediculus humanus corporis] gi|212507965|gb|EEB11794.1| GTP-binding protein Di-Ras2, putative [Pediculus humanus corporis]

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 169/204 (82%), Positives = 181/204 (88%), Gaps = 6/204 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTF+ESYIPTIEDTYRQVISCNKN+CTLQIT
Sbjct: 13  MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFKESYIPTIEDTYRQVISCNKNVCTLQIT 72

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PIWEVI+E KG  NELASIPIM
Sbjct: 73  DTTGSHQFPAMQRLSISKGHAFILVYSVTSRQSLEELKPIWEVIKEIKG--NELASIPIM 130

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDE ENREV  + GEAEA+ WGC FMETSAKTNHNV ELF +LLN+EKNRNISLQ
Sbjct: 131 LVGNKCDEMENREVDLSVGEAEAQSWGCSFMETSAKTNHNVNELFQQLLNMEKNRNISLQ 190

Query: 181 LEKK----GQLKGTRKLKEKCSVM 200
            + K     ++  T K+KEKC VM
Sbjct: 191 FDGKKIRSDKMMATGKIKEKCLVM 214

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|71725385|ref|NP_001019645.1| GTP-binding protein Di-Ras2 [Mus musculus] gi|281332146|ref|NP_001163049.1| GTP-binding protein Di-Ras2 [Rattus norvegicus] gi|62286597|sp|Q5PR73.1|DIRA2_MOUSE RecName: Full=GTP-binding protein Di-Ras2; AltName: Full=Distinct subgroup of the Ras family member 2; Flags: Precursor gi|56269371|gb|AAH86799.1| DIRAS family, GTP-binding RAS-like 2 [Mus musculus] gi|74193148|dbj|BAE20592.1| unnamed protein product [Mus musculus] gi|74193763|dbj|BAE22817.1| unnamed protein product [Mus musculus] gi|74193772|dbj|BAE22821.1| unnamed protein product [Mus musculus]

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 158/202 (78%), Positives = 172/202 (85%), Gaps = 5/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct: 1   MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct: 61  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIM 117

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDE+ NREV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct: 118 LVGNKCDESPNREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query: 181 LE--KKGQLKGTRKLKEKCSVM 200
           ++  K  Q K   KLK KC VM
Sbjct: 178 IDGKKSKQQKRKEKLKGKCVVM 199

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354482814|ref|XP_003503591.1| PREDICTED: GTP-binding protein Di-Ras2-like [Cricetulus griseus] gi|344242163|gb|EGV98266.1| GTP-binding protein Di-Ras2 [Cricetulus griseus]

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 158/202 (78%), Positives = 172/202 (85%), Gaps = 5/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct: 1   MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct: 61  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVDSIPIM 117

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDE+ NREV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct: 118 LVGNKCDESPNREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query: 181 LE--KKGQLKGTRKLKEKCSVM 200
           ++  K  Q K   KLK KC VM
Sbjct: 178 IDGKKSKQQKRKEKLKGKCVVM 199

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344297586|ref|XP_003420478.1| PREDICTED: GTP-binding protein Di-Ras2-like [Loxodonta africana]

 Score =  319 bits (817), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 158/202 (78%), Positives = 172/202 (85%), Gaps = 5/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct: 1   MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct: 61  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIM 117

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDE+ NREV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct: 118 LVGNKCDESPNREVESSEAEALARKWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query: 181 LE--KKGQLKGTRKLKEKCSVM 200
           ++  K  Q K   KLK KC VM
Sbjct: 178 IDGKKSKQQKRKEKLKGKCVVM 199

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350592244|ref|XP_003483425.1| PREDICTED: GTP-binding protein Di-Ras2-like [Sus scrofa]

 Score =  318 bits (815), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 157/202 (77%), Positives = 172/202 (85%), Gaps = 5/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct: 1   MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct: 61  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIM 117

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDE+ NREV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct: 118 LVGNKCDESPNREVESSEAEALARKWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query: 181 LE--KKGQLKGTRKLKEKCSVM 200
           ++  K  Q K   KLK KC +M
Sbjct: 178 IDGKKSKQQKRKEKLKGKCVIM 199

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301767466|ref|XP_002919146.1| PREDICTED: GTP-binding protein Di-Ras2-like [Ailuropoda melanoleuca] gi|345785579|ref|XP_003432700.1| PREDICTED: GTP-binding protein Di-Ras2 [Canis lupus familiaris] gi|281341015|gb|EFB16599.1| hypothetical protein PANDA_007744 [Ailuropoda melanoleuca]

 Score =  318 bits (814), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 158/202 (78%), Positives = 171/202 (84%), Gaps = 5/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct: 1   MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct: 61  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIM 117

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDE+ NREV + E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct: 118 LVGNKCDESPNREVESGEAEALARKWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query: 181 LE--KKGQLKGTRKLKEKCSVM 200
           ++  K  Q K   KLK KC VM
Sbjct: 178 IDGKKSKQQKRKEKLKGKCVVM 199

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|62286628|sp|Q95KD9.1|DIRA2_MACFA RecName: Full=GTP-binding protein Di-Ras2; AltName: Full=Distinct subgroup of the Ras family member 2; Flags: Precursor gi|14388336|dbj|BAB60730.1| hypothetical protein [Macaca fascicularis]

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 156/202 (77%), Positives = 172/202 (85%), Gaps = 5/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct: 1   MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct: 61  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DMESIPIM 117

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDE+ +REV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct: 118 LVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query: 181 LE--KKGQLKGTRKLKEKCSVM 200
           ++  K  Q K   KLK KC +M
Sbjct: 178 IDGKKSKQQKRKEKLKGKCVIM 199

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348552146|ref|XP_003461889.1| PREDICTED: GTP-binding protein Di-Ras2-like [Cavia porcellus]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 157/202 (77%), Positives = 171/202 (84%), Gaps = 5/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct: 1   MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG  +   SIPIM
Sbjct: 61  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVD---SIPIM 117

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDE+ +REV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct: 118 LVGNKCDESPSREVQSSEAEALARSWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query: 181 LE--KKGQLKGTRKLKEKCSVM 200
           ++  K  Q K   KLK KC VM
Sbjct: 178 IDGKKSKQQKRKEKLKGKCVVM 199

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395844631|ref|XP_003795061.1| PREDICTED: GTP-binding protein Di-Ras2 [Otolemur garnettii]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 157/202 (77%), Positives = 171/202 (84%), Gaps = 5/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct: 1   MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct: 61  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIM 117

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDE+ +REV + E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct: 118 LVGNKCDESPSREVQSGEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query: 181 LE--KKGQLKGTRKLKEKCSVM 200
           ++  K  Q K   KLK KC VM
Sbjct: 178 IDGKKSKQQKRKEKLKGKCVVM 199

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
UNIPROTKB|E1C055	199	DIRAS2 "Uncharacterized protei	0.985	0.989	0.797	3e-78
MGI|MGI:1915453	199	Diras2 "DIRAS family, GTP-bind	0.985	0.989	0.787	6.2e-78
RGD|1305580	199	Diras2 "DIRAS family, GTP-bind	0.985	0.989	0.787	6.2e-78
UNIPROTKB|E2RK40	199	DIRAS2 "Uncharacterized protei	0.985	0.989	0.787	7.9e-78
UNIPROTKB|F1RN13	199	LOC100739440 "Uncharacterized	0.985	0.989	0.782	7.9e-78
FB|FBgn0037754	233	CG8500 [Drosophila melanogaste	0.965	0.828	0.785	1.6e-77
UNIPROTKB|Q96HU8	199	DIRAS2 "GTP-binding protein Di	0.985	0.989	0.777	2.7e-77
UNIPROTKB|F1N2Q9	199	DIRAS2 "Uncharacterized protei	0.985	0.989	0.777	2.4e-76
ZFIN|ZDB-GENE-070912-620	227	diras1b "DIRAS family, GTP-bin	0.98	0.863	0.747	2.5e-74
ZFIN|ZDB-GENE-030131-5788	195	diras1a "DIRAS family, GTP-bin	0.975	1.0	0.735	1.2e-72

UNIPROTKB|E1C055 DIRAS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 161/202 (79%), Positives = 174/202 (86%)

Query:     1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
             MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISC+K+ICTLQIT
Sbjct:     1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCDKSICTLQIT 60

Query:    61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
             DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I + KG   ++ SIPIM
Sbjct:    61 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICQIKG---DVESIPIM 117

Query:   121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
             LVGNK DE +NREV ++EGEA AK W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct:   118 LVGNKNDENQNREVESSEGEATAKKWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query:   181 LE-KKG-QLKGTRKLKEKCSVM 200
             ++ KK  Q K   KLK KC VM
Sbjct:   178 IDGKKSKQQKRKEKLKGKCVVM 199

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

MGI|MGI:1915453 Diras2 "DIRAS family, GTP-binding RAS-like 2" [Mus musculus (taxid:10090)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 159/202 (78%), Positives = 173/202 (85%)

Query:     1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
             MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct:     1 MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query:    61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
             DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct:    61 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIM 117

Query:   121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
             LVGNKCDE+ NREV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct:   118 LVGNKCDESPNREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query:   181 LE-KKG-QLKGTRKLKEKCSVM 200
             ++ KK  Q K   KLK KC VM
Sbjct:   178 IDGKKSKQQKRKEKLKGKCVVM 199

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

RGD|1305580 Diras2 "DIRAS family, GTP-binding RAS-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 159/202 (78%), Positives = 173/202 (85%)

Query:     1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
             MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct:     1 MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query:    61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
             DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct:    61 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIM 117

Query:   121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
             LVGNKCDE+ NREV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct:   118 LVGNKCDESPNREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query:   181 LE-KKG-QLKGTRKLKEKCSVM 200
             ++ KK  Q K   KLK KC VM
Sbjct:   178 IDGKKSKQQKRKEKLKGKCVVM 199

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E2RK40 DIRAS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 159/202 (78%), Positives = 172/202 (85%)

Query:     1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
             MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct:     1 MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query:    61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
             DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct:    61 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIM 117

Query:   121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
             LVGNKCDE+ NREV + E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct:   118 LVGNKCDESPNREVESGEAEALARKWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query:   181 LE-KKG-QLKGTRKLKEKCSVM 200
             ++ KK  Q K   KLK KC VM
Sbjct:   178 IDGKKSKQQKRKEKLKGKCVVM 199

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|F1RN13 LOC100739440 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 158/202 (78%), Positives = 173/202 (85%)

Query:     1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
             MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct:     1 MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query:    61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
             DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct:    61 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIM 117

Query:   121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
             LVGNKCDE+ NREV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct:   118 LVGNKCDESPNREVESSEAEALARKWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query:   181 LE-KKG-QLKGTRKLKEKCSVM 200
             ++ KK  Q K   KLK KC +M
Sbjct:   178 IDGKKSKQQKRKEKLKGKCVIM 199

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

FB|FBgn0037754 CG8500 [Drosophila melanogaster (taxid:7227)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 154/196 (78%), Positives = 169/196 (86%)

Query:     2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
             PEQSNDYRVVVFGAGGVGKSSLVLRF+KGTFRESYIPTIEDTYRQVISCNKNICTLQITD
Sbjct:    13 PEQSNDYRVVVFGAGGVGKSSLVLRFIKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 72

Query:    62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
             TTGSHQFPAMQRLSISKGHAFILVYS  S+QSLEELRPIW +I+E KG   ++ +IP+ML
Sbjct:    73 TTGSHQFPAMQRLSISKGHAFILVYSVCSKQSLEELRPIWALIKELKGA--DIPNIPVML 130

Query:   122 VGNKCDET-ENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
             VGNKCDET E REVS AEG+A+A  W   FMETSAKTNHNV ELF ELLN+EK R +SLQ
Sbjct:   131 VGNKCDETAELREVSQAEGQAQATTWSISFMETSAKTNHNVTELFQELLNMEKTRTVSLQ 190

Query:   181 LEKKGQLKGTRKLKEK 196
             L+ K Q K  ++ K K
Sbjct:   191 LDTKKQKKQKKEKKSK 206

GO:0003924 "GTPase activity" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q96HU8 DIRAS2 "GTP-binding protein Di-Ras2" [Homo sapiens (taxid:9606)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 157/202 (77%), Positives = 173/202 (85%)

Query:     1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
             MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct:     1 MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query:    61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
             DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct:    61 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIM 117

Query:   121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
             LVGNKCDE+ +REV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SLQ
Sbjct:   118 LVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSLQ 177

Query:   181 LE-KKG-QLKGTRKLKEKCSVM 200
             ++ KK  Q K   KLK KC +M
Sbjct:   178 IDGKKSKQQKRKEKLKGKCVIM 199

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1N2Q9 DIRAS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 157/202 (77%), Positives = 171/202 (84%)

Query:     1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
             MPEQSNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQIT
Sbjct:     1 MPEQSNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 60

Query:    61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
             DTTGSHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIM
Sbjct:    61 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIM 117

Query:   121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
             LVGNKCDE+ NREV ++E E  A+ W C FMETSAK N NVKELF ELLNLEK R +SLQ
Sbjct:   118 LVGNKCDESPNREVESSEAEVLARKWKCAFMETSAKLNLNVKELFQELLNLEKRRTVSLQ 177

Query:   181 LE-KKG-QLKGTRKLKEKCSVM 200
             ++ KK  Q K   KLK KC VM
Sbjct:   178 IDGKKSKQQKRKEKLKGKCVVM 199

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

ZFIN|ZDB-GENE-070912-620 diras1b "DIRAS family, GTP-binding RAS-like 1b" [Danio rerio (taxid:7955)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 151/202 (74%), Positives = 171/202 (84%)

Query:     1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
             MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR++YIPT+EDTYRQVISC+K++CTLQIT
Sbjct:    30 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTVEDTYRQVISCDKSVCTLQIT 89

Query:    61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
             DTTGSHQFPAMQRLSISKGHAFILVYS TS+QSLEEL+PI++ I   KG      +IPIM
Sbjct:    90 DTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYQQILAIKGNVE---NIPIM 146

Query:   121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
             LVGNK DET+ REV   +GEA++K W C FMETSAKTNHNV ELF ELLNLEK R++SL 
Sbjct:   147 LVGNKSDETQ-REVKTEDGEAQSKTWKCAFMETSAKTNHNVTELFQELLNLEKKRSMSLN 205

Query:   181 LEKKGQLKGTR--KLKEKCSVM 200
             ++ K   K +R  KLK KCSVM
Sbjct:   206 IDGKRSGKQSRADKLKGKCSVM 227

GO:0005525 "GTP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-030131-5788 diras1a "DIRAS family, GTP-binding RAS-like 1a" [Danio rerio (taxid:7955)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 147/200 (73%), Positives = 167/200 (83%)

Query:     1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
             MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR++YIPT+EDTYRQVISC+K++CTL+IT
Sbjct:     1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTVEDTYRQVISCDKSVCTLEIT 60

Query:    61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
             DTTGSHQFPAMQRLSISKG+AFILVYS TSRQSLEEL+PI++ +   KG      +IPIM
Sbjct:    61 DTTGSHQFPAMQRLSISKGYAFILVYSITSRQSLEELKPIYQQVLAIKGNVE---NIPIM 117

Query:   121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
             LVGNK DET+ REV   EGEA+A  W C FMETSAKTN NVKELF ELLNL+K R++SL 
Sbjct:   118 LVGNKSDETQ-REVETKEGEAQANTWKCAFMETSAKTNTNVKELFQELLNLDKKRDMSLN 176

Query:   181 LEKKGQLKGTRKLKEKCSVM 200
             +    Q +   KLK KCSVM
Sbjct:   177 MRSSKQRRAD-KLKAKCSVM 195

GO:0005525 "GTP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96HU8	DIRA2_HUMAN	No assigned EC number	0.7722	0.985	0.9899	yes	N/A
O95057	DIRA1_HUMAN	No assigned EC number	0.7178	0.98	0.9898	no	N/A
Q95KD9	DIRA2_MACFA	No assigned EC number	0.7722	0.985	0.9899	N/A	N/A
Q5PR73	DIRA2_MOUSE	No assigned EC number	0.7821	0.985	0.9899	yes	N/A
P18613	RAPA_DICDI	No assigned EC number	0.3948	0.905	0.9731	yes	N/A
Q5R6S2	DIRA2_PONAB	No assigned EC number	0.7673	0.985	0.9899	yes	N/A
Q91Z61	DIRA1_MOUSE	No assigned EC number	0.7079	0.98	0.9898	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	200
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-108
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-78
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-77
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	3e-76
pfam00071	162	pfam00071, Ras, Ras family	6e-61
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-59
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	3e-55
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-54
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	1e-53
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	7e-52
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-49
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	4e-48
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-46
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	6e-46
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-45
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-45
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	4e-43
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-42
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	5e-41
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	9e-37
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-35
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	3e-35
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	4e-34
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-33
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	6e-33
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-32
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	6e-32
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-30
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-30
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-29
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-29
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	3e-27
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	9e-27
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	9e-27
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-26
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-25
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	9e-25
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	5e-24
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-23
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	3e-23
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	3e-23
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	6e-23
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	7e-23
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-22
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-21
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-21
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-21
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	4e-21
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-20
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-20
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-20
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	2e-20
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-20
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-20
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	4e-20
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	6e-20
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-19
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-18
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	4e-18
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	9e-18
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-17
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	5e-17
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	7e-17
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-16
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-16
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	6e-16
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	6e-16
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	7e-16
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	9e-16
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-14
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	3e-14
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	3e-14
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	7e-14
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	9e-13
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	1e-12
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	3e-12
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	4e-12
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	5e-12
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-10
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	3e-10
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	3e-10
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-09
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-09
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-07
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	4e-07
cd00880	161	cd00880, Era_like, E	2e-06
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	5e-06
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-05
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	4e-05
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	1e-04
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	2e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	2e-04
cd01898	170	cd01898, Obg, Obg GTPase	5e-04
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	6e-04

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score =  306 bits (785), Expect = e-108
 Identities = 140/167 (83%), Positives = 152/167 (91%), Gaps = 2/167 (1%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISC+K+ICTLQITDTTGSH
Sbjct: 1   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSH 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QFPAMQRLSISKGHAFILVYS TS+QSLEEL+PI+E+I E KG  N L  IPIMLVGNKC
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKG--NNLEKIPIMLVGNKC 118

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK 173
           DE+ +REVS++EG A A+ W C FMETSAKTNHNV+ELF ELLNLEK
Sbjct: 119 DESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELLNLEK 165

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  230 bits (590), Expect = 3e-78
 Identities = 77/170 (45%), Positives = 102/170 (60%), Gaps = 4/170 (2%)

Query: 6   NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGS 65
            +Y++VV G GGVGKS+L ++FV+G F + Y PTIED+YR+ I  +  +C L I DT G 
Sbjct: 1   REYKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQ 60

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +F AM+   +  G  F+LVYS T RQS EE+    E I   K        +PI+LVGNK
Sbjct: 61  EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKD----RDDVPIVLVGNK 116

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
           CD    R VS  EG+  A+ WGC F+ETSAK   NV E F +L+   +  
Sbjct: 117 CDLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  228 bits (584), Expect = 2e-77
 Identities = 86/161 (53%), Positives = 106/161 (65%), Gaps = 4/161 (2%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++VV GAGGVGKS+L +RFV G F E Y PTIED+YR+ I  +    TL I DT G  +F
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
            AM+   I  G  FILVYS TSR+S EE++ I E I   K   +    +PI+LVGNKCD 
Sbjct: 61  SAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKED----VPIVLVGNKCDL 116

Query: 129 TENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
              R+VS  EGEA A+ WGC F+ETSAKTN N+ ELF  L+
Sbjct: 117 ENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLV 157

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  225 bits (576), Expect = 3e-76
 Identities = 76/166 (45%), Positives = 103/166 (62%), Gaps = 4/166 (2%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           Y++VV G+GGVGKS+L ++F++G F + Y PTIED+YR+ I  +  +C L I DT G  +
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE 60

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F AM+   +  G  F+LVYS T RQS EE++   E I   K        +PI+LVGNKCD
Sbjct: 61  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD----RDDVPIVLVGNKCD 116

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK 173
               R VS  EG+  A+ WGC F+ETSAK   NV E F +L+   +
Sbjct: 117 LESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  186 bits (476), Expect = 6e-61
 Identities = 76/162 (46%), Positives = 95/162 (58%), Gaps = 6/162 (3%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSHQ 67
           ++V+ G GGVGKSSL++RF +  F E YIPTI  D Y + I  +     LQI DT G  +
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F A++ L       F+LVY  TSR S E ++   E I           ++PI+LVGNKCD
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADE-----NVPIVLVGNKCD 115

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
             + R VS  EGEA AK  G  FMETSAKTN NV+E F EL 
Sbjct: 116 LEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELA 157

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  183 bits (465), Expect = 2e-59
 Identities = 81/162 (50%), Positives = 110/162 (67%), Gaps = 4/162 (2%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y+VVV G+GGVGKS+L ++FV GTF E Y PTIED YR+ I  + +   L+I DT G+ 
Sbjct: 1   EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF +M+ L I  G  FI+VYS  ++Q+ ++++P+ + I   KG       +PI+LVGNK 
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG----YEKVPIILVGNKV 116

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           D    REVS+AEG A A+ WGC FMETSAK+   V ELFAE+
Sbjct: 117 DLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  172 bits (438), Expect = 3e-55
 Identities = 77/164 (46%), Positives = 109/164 (66%), Gaps = 5/164 (3%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV G+GGVGKS+L ++FV+G F + Y PTIED+YR+ I  +   C L+I DT G+ 
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF AM+ L I  G  F LVYS T++QS  +L+ + E I   K    +   +P++LVGNKC
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVK----DTEDVPMILVGNKC 116

Query: 127 DETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAELL 169
           D  + R VS  EG+  A+ WG C F+ETSAK+  NV E+F +L+
Sbjct: 117 DLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLV 160

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  171 bits (434), Expect = 1e-54
 Identities = 76/164 (46%), Positives = 106/164 (64%), Gaps = 5/164 (3%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           DY++VV GAGGVGKS+L ++FV+  F ESY PTIED+YR+ +  +   C L+I DT G+ 
Sbjct: 1   DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTE 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF AM+ L I  G  F+LVYS TS  SL EL  + E +   K   N    +P++LVGNK 
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDN----VPMVLVGNKA 116

Query: 127 DETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAELL 169
           D  ++R+VS  +G + ++ WG   F ETSA+   NV E+F +L+
Sbjct: 117 DLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  168 bits (427), Expect = 1e-53
 Identities = 72/163 (44%), Positives = 107/163 (65%), Gaps = 4/163 (2%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV G+GGVGKS+L ++FV+G F E Y PTIED+YR+ +  +   C L+I DT G+ 
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF AM+ L +  G  F+LVYS T++ +  +L+ + E I   K    +   +P++LVGNKC
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVK----DTEDVPMILVGNKC 116

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D  + R V   +G+  A+ WGC F+ETSAK   NV E+F +L+
Sbjct: 117 DLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  164 bits (417), Expect = 7e-52
 Identities = 78/193 (40%), Positives = 112/193 (58%), Gaps = 16/193 (8%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++ V G+  VGKSSL ++FV+G F ESY PTIE+T+ ++I+       L+I DT G  ++
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEY 62

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             + +      H +ILVYS TSR+S E ++ I++ I +  G      S+PI+LVGNK D 
Sbjct: 63  SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG----KESVPIVLVGNKSDL 118

Query: 129 TENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN-LEKNRNISLQLEKKGQL 187
              R+VSA EG+  A+ WG  F+E+SAK N NV+E F  L+  +EK  N     +K    
Sbjct: 119 HMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEKVENPLPPGQKS--- 175

Query: 188 KGTRKLKEKCSVM 200
                   KCSVM
Sbjct: 176 --------KCSVM 180

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  159 bits (403), Expect = 1e-49
 Identities = 82/193 (42%), Positives = 112/193 (58%), Gaps = 4/193 (2%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++VV G GGVGK++L ++     F E+Y PTIED+YR+ +  +   C L++ DT G  ++
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
            A++   I +G  FILVYS TSR + E +    E I+  K      A +PIM+VGNKCD+
Sbjct: 61  TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVK--DESAADVPIMIVGNKCDK 118

Query: 129 TENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN-LEKNRNISLQLEKKGQL 187
              REVS  EG A A+  GC F+E SAKTN NV+  F  L+  L + R    Q  K G  
Sbjct: 119 VYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGG-QGPKGGPT 177

Query: 188 KGTRKLKEKCSVM 200
           K   K K KC +M
Sbjct: 178 KKKEKKKRKCVIM 190

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score =  157 bits (398), Expect = 4e-48
 Identities = 89/210 (42%), Positives = 116/210 (55%), Gaps = 27/210 (12%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           YR+VV GA  VGK+++V RF+ G F E Y PTIED +R++ S    +  L I DT+G+H 
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP 60

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGA----NELASIPIMLVG 123
           FPAM+RLSI  G  FILV+S  +R+S EE+  + E I ETK        E   IP+++ G
Sbjct: 61  FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120

Query: 124 NKCDETENREVSAAE-----GEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK----- 173
           NK D    REV   E     G  E     C + E SAK N N+ E+F  L +L K     
Sbjct: 121 NKADRDFPREVQRDEVEQLVGGDEN----CAYFEVSAKKNSNLDEMFRALFSLAKLPNEM 176

Query: 174 ----NRNISLQ----LEKKGQLKGTRKLKE 195
               +R IS+Q    L KK    G+RK KE
Sbjct: 177 SPSLHRKISVQYGDALHKK-SRGGSRKRKE 205

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score =  151 bits (382), Expect = 2e-46
 Identities = 75/200 (37%), Positives = 109/200 (54%), Gaps = 13/200 (6%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           R+V  GA GVGK++L+ RF+  TF   +  T+E+ + +         T+ I DT+GS+ F
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
           PAM++LSI  G AF LVYS    +S EE++ + E I E K    E   +PI++VGNK D 
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVK----EDKFVPIVVVGNKIDS 116

Query: 129 TENREVSAAEGEAEAKM-WGCHFMETSAKTNHNVKELFAELL---NLEKNRNISLQ---- 180
              R+V AA+  +  ++ W   F+E SAK N NV E+F ELL   NL    + +L+    
Sbjct: 117 LAERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQANLPSWLSPALRRRRE 176

Query: 181 -LEKKGQLKGTRKLKEKCSV 199
               + Q +        CSV
Sbjct: 177 SAPSEIQRRPPMNKTNSCSV 196

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  148 bits (376), Expect = 6e-46
 Identities = 67/159 (42%), Positives = 87/159 (54%), Gaps = 6/159 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G  GVGK+SL+LRFV   F E+Y  TI  D   + I  +     LQI DT G  
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++        H  ILVY  T+R+S E L   W  + E K  A    +IPI+LVGNK 
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLD-KW--LNELKEYAPP--NIPIILVGNKS 115

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D  + R+VS  E +  AK  G  F ETSAKT  NV E F
Sbjct: 116 DLEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAF 154

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  148 bits (376), Expect = 1e-45
 Identities = 75/185 (40%), Positives = 106/185 (57%), Gaps = 4/185 (2%)

Query: 5   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
           S +Y++VV G GGVGKS+L ++F++  F + Y PTIED+YR+    ++  C L I DT G
Sbjct: 3   STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAG 62

Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
             ++ AM+   +  G  F+ VYS TSR S EE+    E I   K    +   +P++LVGN
Sbjct: 63  QEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVK----DKDRVPMILVGN 118

Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184
           KCD    R+VS  EG+  AK +G  F+ETSAK   NV E F EL+   +         +K
Sbjct: 119 KCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKEDMPSQK 178

Query: 185 GQLKG 189
            + KG
Sbjct: 179 QKKKG 183

Length = 189

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  147 bits (374), Expect = 1e-45
 Identities = 64/162 (39%), Positives = 98/162 (60%), Gaps = 5/162 (3%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV GAGGVGKS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  
Sbjct: 1   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ AM+   +  G  F+ V++  SR+S E++    E I+  K    +   +P++LVGNKC
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVK----DSDDVPMVLVGNKC 116

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           D    R VS  +G+  AK +G  ++ETSAKT   V+E F  L
Sbjct: 117 D-LAARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL 157

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  141 bits (358), Expect = 4e-43
 Identities = 62/161 (38%), Positives = 88/161 (54%), Gaps = 4/161 (2%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           Y++VV G GGVGKS+L ++F++  F   Y PTIED+Y +    +     L I DT G  +
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQEE 62

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F AM+   +  G  F+LV+S T R S EE+      I   K    +    P++LVGNK D
Sbjct: 63  FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVK----DRDEFPMILVGNKAD 118

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
               R+VS  EG+  A+     ++ETSAK   NV + F +L
Sbjct: 119 LEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDL 159

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  139 bits (353), Expect = 2e-42
 Identities = 62/161 (38%), Positives = 93/161 (57%), Gaps = 4/161 (2%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           ++V++ G+GGVGKS+L L+F+   F E Y PT  D+YR+ +  +     L I DT G   
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           + A++      G  F+LV+S T  +S   L    E I   K    E  ++P++LVGNKCD
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVK----EDDNVPLLLVGNKCD 116

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
             + R+VS  E    A+ WG +++ETSAKT  NV ++F +L
Sbjct: 117 LEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDL 157

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  136 bits (345), Expect = 5e-41
 Identities = 67/169 (39%), Positives = 92/169 (54%), Gaps = 6/169 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G  GVGKSSL+ RF  G F E Y  TI   ++ + I  +     LQI DT G  
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++           +LVY  T+R+S E L   W  ++E +  A+   ++ IMLVGNK 
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLEN-W--LKELREYASP--NVVIMLVGNKS 115

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
           D  E R+VS  E EA A+  G  F ETSAKTN NV+E F EL      R
Sbjct: 116 DLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  125 bits (316), Expect = 9e-37
 Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 6/162 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +++V+ G   VGKSS+VLRFVK  F E+   TI   +  Q ++ +      +I DT G  
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++  +      A I+VY  TS +S E+ +  W  ++E +       +I I L GNK 
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKS-W--VKELQEHGPP--NIVIALAGNKA 116

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           D    R+VS  E +  A   G  FMETSAKT  NV ELF E+
Sbjct: 117 DLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEI 158

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  122 bits (308), Expect = 2e-35
 Identities = 62/163 (38%), Positives = 88/163 (53%), Gaps = 6/163 (3%)

Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
           + V GA GVGKS+L +RF+   F   Y P +E  Y + ++ +    +L+I DT G  Q  
Sbjct: 2   IAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQNE 61

Query: 70  AMQRL--SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
             + L  S+     F+LVYS T R S + +  + ++IRE K    E   IP++LVGNK D
Sbjct: 62  DPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGE---IPVILVGNKAD 118

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTN-HNVKELFAELL 169
              +R+VS  EG+  A   GC F E SA  N   V+ +F EL 
Sbjct: 119 LLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELC 161

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  121 bits (306), Expect = 3e-35
 Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 4/158 (2%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           Y++V+ GAGGVGKS++ ++F+  +F + + PTIED Y+     +     L I DT G  +
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQAE 62

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F AM+   +  G  FI+ YS T R S +E     E+I   +   +    IP++LVGNK D
Sbjct: 63  FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTED----IPLVLVGNKVD 118

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
             + R+V+  EG   A+ + C F ETSA     + + F
Sbjct: 119 LEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAF 156

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  118 bits (298), Expect = 4e-34
 Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 6/159 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSH 66
           +++V  G   VGK+S++ RF+  TF   Y  TI  D   + +  +     LQ+ DT G  
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++    I      ++VY  T+RQS +      + +R+ +G       + I+LVGNK 
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-----NDVIIVLVGNKT 115

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D ++ R+VS  EGE +AK     F+ETSAK  HNVK+LF
Sbjct: 116 DLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLF 154

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  115 bits (291), Expect = 4e-33
 Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
            ++++ G  GVGKSSL+LRF   TF E    TI   ++ + ++ +     L I DT G  
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F  +           ILVY  T R + + L   W  + E    +        MLVGNK 
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTW--LNELDTYSTN-PDAVKMLVGNKI 116

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
           D+ ENREV+  EG+  A+     F+ETSAKT   V++ F EL+ 
Sbjct: 117 DK-ENREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVE 159

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  115 bits (291), Expect = 6e-33
 Identities = 66/170 (38%), Positives = 90/170 (52%), Gaps = 8/170 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY--RQVISCNKNICTLQITDTTGS 65
           +++++ G  GVGKS L+LRF + +F  S+I TI   +  R +    K I  LQI DT G 
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKI-KLQIWDTAGQ 62

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +F  +           ILVY  T  +S E ++  W  +R     A+E   +  MLVGNK
Sbjct: 63  ERFRTITTSYYRGAMGIILVYDITDEKSFENIKN-W--MRNIDEHASE--DVERMLVGNK 117

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
           CD  E R VS  EGEA A+ +G  F+ETSAK N NV+E F  L      +
Sbjct: 118 CDMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  114 bits (289), Expect = 1e-32
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 21/172 (12%)

Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
           +VV G G VGK+ L++ +    F   Y+PT+ D Y   ++ +     L + DT G  ++ 
Sbjct: 3   IVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEYD 62

Query: 70  AMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKCD 127
            ++ LS  +   F+L +S  S  S E ++  W  E+            ++PI+LVG K D
Sbjct: 63  RLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKH-------YCPNVPIILVGTKID 115

Query: 128 -----------ETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
                      E + + ++  EGE  AK  G   +ME SA T   +KE+F E
Sbjct: 116 LRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDE 167

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  113 bits (284), Expect = 6e-32
 Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 8/163 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY--RQVISCNKNICTLQITDTTGS 65
           ++VV+ G G VGK+SLVLR+V+  F E +  T + ++  + V    K I  L I DT G 
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRI-DLAIWDTAGQ 59

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            ++ A+  +        ILVY  T   S ++++  W  I+E K       +I +++VGNK
Sbjct: 60  ERYHALGPIYYRDADGAILVYDITDADSFQKVK-KW--IKELKQMRGN--NISLVIVGNK 114

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
            D    R VS +E E  AK  G    ETSAKT   ++ELF  L
Sbjct: 115 IDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSL 157

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score =  111 bits (279), Expect = 1e-30
 Identities = 65/186 (34%), Positives = 95/186 (51%), Gaps = 5/186 (2%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           YRVV+ G  GVGKSSL   F  G + +S Y  + +DTY + +S +    TL + D     
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
               ++   +  G A+++VYS T R S E+   +   +R       +   IPI+LVGNK 
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRA----RQAEDIPIILVGNKS 116

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKGQ 186
           D   +REVS  EG A A ++ C F+ETSA   HNV ELF  ++   + R  S +   +  
Sbjct: 117 DLVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLRRDSKEKNTRRM 176

Query: 187 LKGTRK 192
               R+
Sbjct: 177 ASRKRR 182

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  109 bits (274), Expect = 2e-30
 Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 10/161 (6%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G  GVGKS L+LRF   T+ ESYI TI   ++ + I  +     LQI DT G  
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           +F  +        H  I+VY  T ++S   ++  W  E+ R      N+L      LVGN
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLQEIDRYASENVNKL------LVGN 115

Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           KCD T+ + V   E +  A   G  F+ETSAK   NV+E F
Sbjct: 116 KCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAF 156

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  107 bits (268), Expect = 1e-29
 Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 10/161 (6%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
           ++ ++ G  GVGKS L+L+F    F+  +  TI  E   R +    K I  LQI DT G 
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQI-KLQIWDTAGQ 63

Query: 66  HQFPAMQRLSISKGHA-FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
             F ++ R S  +G A  +LVY  T R++   L   W  + + +  +N  +++ IML+GN
Sbjct: 64  ESFRSITR-SYYRGAAGALLVYDITRRETFNHL-TSW--LEDARQHSN--SNMTIMLIGN 117

Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           KCD    REVS  EGEA A+  G  FMETSAKT  NV+E F
Sbjct: 118 KCDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAF 158

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  106 bits (268), Expect = 1e-29
 Identities = 60/172 (34%), Positives = 86/172 (50%), Gaps = 22/172 (12%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
           +++V+ G  GVGKS+L+ RF +  F      TI  E   R +    K I   QI DT G 
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTI-KAQIWDTAGQ 62

Query: 66  HQFPAMQRLSISKGH------AFILVYSCTSRQSLEEL-RPIWEVIRETKGGANELASIP 118
            ++ A     I+  +      A  LVY  T + + E + R  W  ++E +  A+  ++I 
Sbjct: 63  ERYRA-----ITSAYYRGAVGAL-LVYDITKKSTFENVER--W--LKELRDHAD--SNIV 110

Query: 119 IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
           IMLVGNK D    R V   E +A A+  G  F+ETSA    NV+E F +LL 
Sbjct: 111 IMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT 162

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  101 bits (253), Expect = 3e-27
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 22/173 (12%)

Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
           +VV G G VGK+ L++ +    F E Y+PT+ + Y   +  +     L + DT G   + 
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60

Query: 70  AMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKCD 127
            ++ LS      F++ +S  S  S E ++  W  EV             +PI+LVG K D
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPN-------VPIILVGTKLD 113

Query: 128 ------------ETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAE 167
                       + +   V+  +G+A AK  G   ++E SA T   V+E+F E
Sbjct: 114 LRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEE 166

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  101 bits (252), Expect = 9e-27
 Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 25/211 (11%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++VV G GGVGK++L+ R V   F E Y PTI      + I   +    LQ+ DT G  
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW-EVIRETKGGANELASIPIMLVGNK 125
           ++ +++       +  ++VY  T R+S +EL   W E +RE          +PI+LVGNK
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP-----DDVPILLVGNK 120

Query: 126 CDETENREVSAAEGEAEAKM---------------WGCHFMETSAK--TNHNVKELFAEL 168
            D  + +  S        +                     +ETSAK  T  NV ELF EL
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Query: 169 LN-LEKNRNISLQLEKKGQLKGTRKLKEKCS 198
           L  L +     +   +  QL       E+ +
Sbjct: 181 LRKLLEEIEKLVLKNELRQLDRLNNPIEQAA 211

Length = 219

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  100 bits (251), Expect = 9e-27
 Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 33/209 (15%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKN-ICTLQITDTTGSHQ 67
           ++VV G GG GK+ L++ + +G+F E Y+PT+ + Y   +      I  L + DT G   
Sbjct: 5   KIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQED 64

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNK 125
           +  ++ LS       ++ YS  +  SL+ +   W  EV     G        PI+LVG K
Sbjct: 65  YDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPG-------TPIVLVGLK 117

Query: 126 CDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELLNLE 172
            D  +++             V+  +GE+ AK  G   ++E SAK   NV E+F   +N+ 
Sbjct: 118 TDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINV- 176

Query: 173 KNRNISLQLEKKGQLKGTRKLKE-KCSVM 200
                      K      +K K+ KC ++
Sbjct: 177 --------ALSKSGRAARKKKKKKKCVIL 197

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score =   99 bits (249), Expect = 2e-26
 Identities = 68/211 (32%), Positives = 96/211 (45%), Gaps = 31/211 (14%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSH 66
            RV V GA GVGK+++V +F+   F E YIPT     YR  +  +  +  L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILD----- 55

Query: 67  QFPAMQRLSISKG--------------HAFILVYSCTSRQSLEELRPIWEVIRETKGGAN 112
             P MQR   + G               AFILVY   S  S   ++ + + I ET+   N
Sbjct: 56  -VPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGN 114

Query: 113 ELASIPIMLVGNKCDETENREVSA-AEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN- 170
                PI++VGNK D+  +R            K W C ++E SAK N ++  LF ELL  
Sbjct: 115 --KEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLIS 172

Query: 171 -LEKNRNISLQLEKKGQLKGTRKLKEKCSVM 200
              + R+    L  +G L      +E+CS+M
Sbjct: 173 ATTRGRSTHPALRLQGALH-----RERCSIM 198

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 96.8 bits (241), Expect = 1e-25
 Identities = 58/170 (34%), Positives = 75/170 (44%), Gaps = 19/170 (11%)

Query: 11  VVFGAGGVGKSSLVLRFVKGTFRES---YIPTI-EDTYRQVISCNKNICTLQITDTTGSH 66
           VV G GGVGKSSL+   + G   E       T   D Y      +K    L + DT G  
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYV--KELDKGKVKLVLVDTPGLD 58

Query: 67  QFPAMQ-----RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
           +F  +      RL +      +LV   T R+S E+ + +       +G       IPI+L
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEG-------IPIIL 111

Query: 122 VGNKCDETENREVSAAE-GEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
           VGNK D  E REV      E  AK+ G    E SAKT   V ELF +L+ 
Sbjct: 112 VGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 95.8 bits (238), Expect = 9e-25
 Identities = 67/163 (41%), Positives = 88/163 (53%), Gaps = 10/163 (6%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
           ++ ++ G  GVGKS L+L+F    F+  +  TI  E   R +   NK I  LQI DT G 
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPI-KLQIWDTAGQ 65

Query: 66  HQFPAMQRLSISKGHA-FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
             F ++ R S  +G A  +LVY  T R++   L    E  R+    AN  A++ IML+GN
Sbjct: 66  ESFRSITR-SYYRGAAGALLVYDITRRETFNHLASWLEDARQH---AN--ANMTIMLIGN 119

Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
           KCD    R VS  EGE  AK  G  FME SAKT  NV+E F +
Sbjct: 120 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162

Length = 210

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 93.4 bits (232), Expect = 5e-24
 Identities = 61/200 (30%), Positives = 92/200 (46%), Gaps = 17/200 (8%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G  GVGKSSL+LRF   TF  SYI TI   ++ + +  N     LQI DT G  
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F  +        H  I+VY  T+ +S   ++   + I            +  +LVGNK 
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIE------QNCDDVCKVLVGNKN 120

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF---------AELLNLEKNRNI 177
           D+ E + V   +    A   G    ETSAK N NV+E+F         A+  NL K +  
Sbjct: 121 DDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQ-Q 179

Query: 178 SLQLEKKGQLKGTRKLKEKC 197
             Q +     K +++ K  C
Sbjct: 180 QQQNDVVKLPKNSKRKKRCC 199

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 92.2 bits (229), Expect = 1e-23
 Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 18/171 (10%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           +VVV G G  GK+SL+  F +G F + Y PT+ + Y   I  +     L + DT G  +F
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKC 126
             ++ LS +  H  +L +S  +  SLE +   W  E+     G       + ++LV  KC
Sbjct: 62  DRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPG-------VKLVLVALKC 114

Query: 127 DETENREVSAA--------EGEAEAKMWG-CHFMETSAKTNHNVKELFAEL 168
           D  E R             EG A AK    C ++E SAK N  V E F E 
Sbjct: 115 DLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEA 165

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 90.6 bits (225), Expect = 3e-23
 Identities = 56/160 (35%), Positives = 80/160 (50%), Gaps = 9/160 (5%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY--RQV-ISCNKNICTLQITDTTGS 65
           +V+V G G VGKSS++ RFVKG F + Y  TI   +  +Q+ +  +     L + DT G 
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +F A+ +       A ILV+S T R+S E +   W+   E      E   IP++LV  K
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAI-ESWKEKVE-----AECGDIPMVLVQTK 115

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
            D  +   ++  E EA AK        TS K + NV ELF
Sbjct: 116 IDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 90.6 bits (225), Expect = 3e-23
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 13/168 (7%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
           +++++ G   VGK+ +V RF  GTF E    TI  + T + +    K +  LQI DT G 
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRV-KLQIWDTAGQ 62

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETK--GGANELASIPIMLVG 123
            +F  + +      +  I+ Y  T R S E + P W  I E +  G +N    + ++L+G
Sbjct: 63  ERFRTITQSYYRSANGAIIAYDITRRSSFESV-PHW--IEEVEKYGASN----VVLLLIG 115

Query: 124 NKCDETENREVSAAEGEAEAKMWGCHF-METSAKTNHNVKELFAELLN 170
           NKCD  E REV   E    A+ +G    +ETSAK + NV+E F  +  
Sbjct: 116 NKCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMAT 163

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 90.7 bits (225), Expect = 6e-23
 Identities = 62/194 (31%), Positives = 100/194 (51%), Gaps = 8/194 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYR-QVISCNKNICTLQITDTTGS 65
           ++V++ G  GVGK+ L++RF  G F   S+I T+   +  +V++ +     LQI DT G 
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +F ++        HA +L+Y  T++ S + +R     I E        + + IML+GNK
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQ-----SDVVIMLLGNK 115

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKG 185
            D +  R V   +GE  AK +G  FMETSAKT  NV+  F  +    K+R++    E K 
Sbjct: 116 ADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQPDEPKF 175

Query: 186 QLKG-TRKLKEKCS 198
           +++    K K+   
Sbjct: 176 KIQDYVEKQKKSSG 189

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 89.4 bits (222), Expect = 7e-23
 Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 14/165 (8%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
           ++ ++ G+ G GKS L+ +F++  F++    TI  E   R V    K++  LQI DT G 
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSV-KLQIWDTAGQ 59

Query: 66  HQFPAMQRLSISKGHA-FILVYSCTSRQSLEELRPIWEVIRETKGGANELAS--IPIMLV 122
            +F ++ R S  +G A  +LVY  TSR+S   L   W         A  LAS  I I+LV
Sbjct: 60  ERFRSVTR-SYYRGAAGALLVYDITSRESFNALTN-W------LTDARTLASPDIVIILV 111

Query: 123 GNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
           GNK D  ++REV+  E    A+  G  F+ETSA T  NV+E F +
Sbjct: 112 GNKKDLEDDREVTFLEASRFAQENGLLFLETSALTGENVEEAFLK 156

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 89.2 bits (221), Expect = 1e-22
 Identities = 57/162 (35%), Positives = 83/162 (51%), Gaps = 6/162 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G  GVGK+ LV RF +G F      TI  D   + +        LQI DT G  
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++ +      +A IL Y  T  +S   L P W  +RE +  AN    +  +LVGNK 
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCL-PEW--LREIEQYANN--KVITILVGNKI 122

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           D  E REVS    E  +     +++ETSAK + NV++LF +L
Sbjct: 123 DLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 86.6 bits (215), Expect = 1e-21
 Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 25/174 (14%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSH 66
            +V++ G  GVGK+SL+ ++V   F   Y  TI  D   + ++ +  + TLQI DT G  
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 67  QFPAMQRLSISKGHAF-------ILVYSCTSRQSLEELRPIWEVIRE---TKGGANELAS 116
           +F        S G AF       +LVY  T+ +S E L    +  R+    +    +  +
Sbjct: 61  RF-------QSLGVAFYRGADCCVLVYDVTNPKSFESL----DSWRDEFLIQASPRDPEN 109

Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGC--HFMETSAKTNHNVKELFAEL 168
            P +++GNK D  E R+VS  + +   K  G   +F ETSAK   NV + F  +
Sbjct: 110 FPFVVLGNKIDLEEKRQVSTKKAQQWCKSKGNIPYF-ETSAKEAINVDQAFETI 162

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 86.3 bits (214), Expect = 2e-21
 Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 18/168 (10%)

Query: 11  VVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPA 70
           V+ G G VGK+SL++ +    +   Y+PT  D +  V+  +     LQ+ DT G  +F  
Sbjct: 4   VLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK 63

Query: 71  MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130
           ++ L       F+L +S  +  S + +   W  I E +         PI+LVG + D   
Sbjct: 64  LRPLCYPDTDVFLLCFSVVNPSSFQNISEKW--IPEIRKH---NPKAPIILVGTQADLRT 118

Query: 131 N------------REVSAAEGEAEAKMWG-CHFMETSAKTNHNVKELF 165
           +            + VS +  +A A+  G C ++E SA T  N+KE+F
Sbjct: 119 DVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 85.9 bits (213), Expect = 2e-21
 Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 14/166 (8%)

Query: 6   NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGS 65
            D R+V+ G  GVGKSSL++  V   F E+    + +                I DT+  
Sbjct: 1   KDVRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPE-ITIPADVTPERVPTTIVDTSSR 59

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            Q  A     I K +   LVYS     +LE +R  W  +   +    +   +PI+LVGNK
Sbjct: 60  PQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKW--LPLIRRLGVK---VPIILVGNK 114

Query: 126 CDETENREVSAAEGEAEAKMWGCHF------METSAKTNHNVKELF 165
            D  +    +  E E    M    F      +E SAKT  NV E+F
Sbjct: 115 SDLRDGSSQAGLEEEMLPIM--NEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 86.0 bits (213), Expect = 4e-21
 Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 6/163 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNI-CTLQITDTTGS 65
           +R++V G   VGKSSL+ RF +G F E   PT+  D + ++I     +   LQ+ DT G 
Sbjct: 3   FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ 62

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +F ++ R         +LV+  T+R+S E +    E  R              +LVG+K
Sbjct: 63  ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPH----RPVFILVGHK 118

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           CD    R+V+  E E  AK  G  ++ETSA+T  NV+E F  L
Sbjct: 119 CDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 82.5 bits (204), Expect = 1e-20
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 4/119 (3%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ 67
           +VVV G  G GKSSL+ + V G F    +    DT     +  + +   L I D  G  +
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
                 + +    A +LVY  T R+SL E+  +   +   +    +   IP++LVGNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGK---IPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 84.0 bits (208), Expect = 2e-20
 Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++ F K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 62

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W    E K   +   ++PI+LVGNK   
Sbjct: 63  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW--TPEVK---HFCPNVPIILVGNKKDL 117

Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG A A+  G   ++E SAKT   V+E+F
Sbjct: 118 RNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 84.3 bits (209), Expect = 2e-20
 Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 14/202 (6%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKN-ICTLQITDTTGS 65
           ++V+V G  GVGK+S++ R+V G F + Y  TI  D   +VI  + N +  LQ+ D  G 
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +F  M R+        I+V+  T   + E +   W+   ++K        IP +L+ NK
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPALLLANK 119

Query: 126 CDETENREVSAAEG----EAEAKMWGCHFMETSAKTNHNVKELFAELLNL----EKNRNI 177
           CD  + R     E       E    G    ETSAK N N++E    L+      +K    
Sbjct: 120 CDLKKERLAKDPEQMDQFCKENGFIGW--FETSAKENINIEEAMRFLVKNILKNDKGLQS 177

Query: 178 SLQLEKKG-QLKGTRKLKEKCS 198
               E     LK      +  S
Sbjct: 178 PEPDEDNVIDLKQETTTSKSKS 199

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 83.1 bits (205), Expect = 2e-20
 Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 6/165 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +R+++ G  GVGK+ L+ RF    F  S+I TI  D   + I  +     +QI DT G  
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++  + +    +     LVY  +S +S +    I + + +    A E       L+GNK 
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQH---IMKWVSDVDEYAPEGVQKI--LIGNKA 115

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
           DE + R+V   +G   AK +G  F ETSA TN N+KE F  L  L
Sbjct: 116 DEEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLTEL 160

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 83.2 bits (206), Expect = 2e-20
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY--RQVISCNKNICTLQITDTTGSH 66
           +V+  G  GVGKS ++ R+ +G F   Y+PTI   Y  ++V   NK +  +   D +G  
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEV-RVNFFDLSGHP 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++  ++          +LVY  T RQS E L    + +++  G    + +I +++  NK 
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
           D T++R VS  EG   A+  G  + ETSA T   V E+F  L +
Sbjct: 121 DLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFS 164

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 84.3 bits (208), Expect = 2e-20
 Identities = 56/162 (34%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G  GVGKSSL++ F+  +  E   PTI   ++ + ++       L I DT G  
Sbjct: 15  FKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F  +           ILVY  T R++   L  +W    E      +      MLVGNK 
Sbjct: 74  RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVK---MLVGNKV 130

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           D    R+VS  EG A AK  GC F+E SAKT  NV++ F EL
Sbjct: 131 DRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEEL 172

Length = 211

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 82.6 bits (204), Expect = 4e-20
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 11  VVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPA 70
           V  G G VGK+ +++ +   TF   Y+PT+ D +   +  + N   L + DT G   +  
Sbjct: 5   VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNR 64

Query: 71  MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE 130
           ++ LS      F+L +S  S+ S E +   W  I E +  A     +PI+LVG K D  +
Sbjct: 65  LRPLSYRGADVFLLAFSLISKASYENVLKKW--IPELRHYA---PGVPIVLVGTKLDLRD 119

Query: 131 NRE----------VSAAEGEAEAKMWG-CHFMETSAKTNHNVKELF 165
           +++          ++ A+GE   K  G   ++E S+KT  NVK +F
Sbjct: 120 DKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 81.9 bits (202), Expect = 6e-20
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 8/166 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT--IEDTYRQVISCNKNICTLQITDTTGS 65
           +++++ G   VGK+S + R+   +F  +++ T  I+   + V   +K I  LQI DT G 
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRI-KLQIWDTAGQ 60

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            ++  +          FIL+Y  T+ +S   ++  W    +T    N      ++LVGNK
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNA----QVILVGNK 115

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
           CD  + R VSA  G   A   G  F E SAK N NVK++F  L+++
Sbjct: 116 CDMEDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 81.3 bits (201), Expect = 1e-19
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 12/169 (7%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGT-FRESYIPTIEDTYR-QVISCNKNICTLQITDTTG 64
           + ++V+ G   VGKS+L+ R +        Y P     Y   VI  +       + DT G
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60

Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQ-SLEELRPIW--EVIRETKGGANELASIPIML 121
              + A++RL      + + V+        +EE+      E+I   + G      +PI+L
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESG------VPIIL 114

Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
           VGNK D   + ++        AK+ G   +  SA+T  N+   F  +  
Sbjct: 115 VGNKID-LRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 79.3 bits (195), Expect = 1e-18
 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 22/174 (12%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F + YIPT+ D Y    + +    +L + DT G  ++
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY 64

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKC 126
             ++ LS  + + FI+ +S  S  S E +R  W  EV        +   ++PI+LVG K 
Sbjct: 65  DRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEV-------CHHCPNVPILLVGTKK 117

Query: 127 DETENREV------------SAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
           D   + +             +  +G A AK      ++E SA     VKE+FAE
Sbjct: 118 DLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAE 171

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 77.9 bits (192), Expect = 4e-18
 Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 19/183 (10%)

Query: 7   DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ---VISCNKNICT----- 56
           DY  +++  G  GVGK++ + R+    F   +I T+   +R+   V +      T     
Sbjct: 2   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAF 61

Query: 57  ---LQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANE 113
              LQ+ DT G  +F ++          F+L++  TS QS   +R     ++     A+ 
Sbjct: 62  RVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQ-----AHA 116

Query: 114 LASIP-IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE 172
               P I+L+GNK D  + REVS  +    A  +G  + ETSA T  NV++    LL+L 
Sbjct: 117 YCENPDIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 176

Query: 173 KNR 175
             R
Sbjct: 177 MKR 179

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 76.5 bits (188), Expect = 9e-18
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 4/166 (2%)

Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDT 62
           +S+  +V++ G GGVGKSSL+ R+V   F      TI   +  + +  + +  TLQI DT
Sbjct: 2   KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDT 61

Query: 63  TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV 122
            G  +F +++          +L +S    QS + L   W+          E  S P +++
Sbjct: 62  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVIL 120

Query: 123 GNKCDETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
           GNK D  E R+VS  E +A  +  G + + ETSAK   NV   F E
Sbjct: 121 GNKIDIPE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 165

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 76.4 bits (188), Expect = 1e-17
 Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 8/162 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++ ++ G  GVGKS L+ +F +  F      TI   +  ++I  N     LQI DT G  
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62

Query: 67  QFPAMQRLSISKGHA-FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
           +F A+ R S  +G A  ++VY  T R +   L   W  + + +   N   +  I L+GNK
Sbjct: 63  RFRAVTR-SYYRGAAGALMVYDITRRSTYNHLSS-W--LTDARNLTN--PNTVIFLIGNK 116

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
            D    R+V+  E +  A   G  F+E SAKT  NV++ F E
Sbjct: 117 ADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLE 158

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 75.2 bits (185), Expect = 5e-17
 Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 24/215 (11%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNI-CTLQITDTTGS 65
            ++VV G G  GK+SL+ RF +  F +SY  TI  D + + I+   ++  TLQ+ D  G 
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
                M    I    A  LVY  T+ QS E L     V++  K          ++LVGNK
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVK--KVNEESETKPKMVLVGNK 118

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF----AELLNLEKNR------ 175
            D   NR+V+A +    A+      +  SAKT   V   F    AELL ++ ++      
Sbjct: 119 TDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELEQS 178

Query: 176 -----NISLQLEKKGQLKGTRKLKEK-----CSVM 200
                    +  ++   +   +   K     C+VM
Sbjct: 179 QRVVKADVSRYSERTLREPVSRSVNKRSNSMCAVM 213

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 75.0 bits (184), Expect = 7e-17
 Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 7/164 (4%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
           +V++ G+ GVGK+SL+ RF   TF E+   T+   ++ + +        LQI DT G  +
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F ++           ILVY  T +++ ++L P W  ++     A+E A   ++LVGNK D
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDL-PKW--MKMIDKYASEDAE--LLLVGNKLD 116

Query: 128 ETENREVSAAEGEAEA-KMWGCHFMETSAKTNHNVKELFAELLN 170
              +RE++  +GE  A ++ G  F E SAK N NV E+F +L++
Sbjct: 117 CETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 73.7 bits (181), Expect = 1e-16
 Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 24/175 (13%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
           + VV G G VGK+ L++ +    F   YIPT+ D Y   V+   K +  L + DT G   
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV-NLGLWDTAGQED 61

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNK 125
           +  ++ LS  +   F++ +S  S  S E +R  W  EV        +   + PI+LVG K
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-------RHHCPNTPIILVGTK 114

Query: 126 CDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
            D  ++++            ++  +G A AK  G   ++E SA T   +K +F E
Sbjct: 115 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 169

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 73.7 bits (181), Expect = 2e-16
 Identities = 59/200 (29%), Positives = 84/200 (42%), Gaps = 20/200 (10%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +VV+ G   VGK+SLV R+V   F    Y  TI   +  + +   + + TL I DT GS 
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS----IPIMLV 122
           ++ AM R+      A I+ Y  T   S E  +  W           EL +      I L 
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAK-FW---------VKELQNLEEHCKIYLC 111

Query: 123 GNKCDETEN----REVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNIS 178
           G K D  E     R+V   + +  A        ETS+KT  NV ELF ++     +R  +
Sbjct: 112 GTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANN 171

Query: 179 LQLEKKGQLKGTRKLKEKCS 198
               +KG   G +K     S
Sbjct: 172 QMNTEKGVDLGQKKNSYFYS 191

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 72.7 bits (178), Expect = 6e-16
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 8/164 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
           +++V+ G  GVGKS+++ RF +  F      TI  E   R +    K +   QI DT G 
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTV-KAQIWDTAGQ 71

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            ++ A+           +LVY  T RQ+ + ++  W  +RE +  A+  ++I IM+ GNK
Sbjct: 72  ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQR-W--LRELRDHAD--SNIVIMMAGNK 126

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
            D    R V+  +G+A A+  G  F+ETSA    NV++ F  +L
Sbjct: 127 SDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170

Length = 216

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 72.4 bits (178), Expect = 6e-16
 Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 13/172 (7%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVI-SCNKNICTLQI 59
             ++  ++++++ G GGVGK++ V R + G F + YIPT+      +    N       +
Sbjct: 3   QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNV 62

Query: 60  TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASI 117
            DT G  +F  ++     KG   I+++  TSR + + + P W  +++R  +       +I
Sbjct: 63  WDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNV-PNWHRDIVRVCE-------NI 114

Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           PI+LVGNK D  ++R+V A +     K     + + SAK+N+N ++ F  L 
Sbjct: 115 PIVLVGNKVD-VKDRQVKARQITFHRKK-NLQYYDISAKSNYNFEKPFLWLA 164

Length = 215

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 71.3 bits (175), Expect = 7e-16
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 21/178 (11%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNICTLQITDTTGS 65
           ++++V G   VGK+ L  RF  G F E    TI   +R+  V    + I  +Q+ DT G 
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERI-KVQLWDTAGQ 61

Query: 66  HQFPAMQRLSISKG-----HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS-IPI 119
            +F    R S+ +      HA + VY  T+  S   L P W  I E +   + L + +P 
Sbjct: 62  ERF----RKSMVQHYYRNVHAVVFVYDVTNMASFHSL-PSW--IEECEQ--HSLPNEVPR 112

Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK---TNHNVKELFAELLNLEKN 174
           +LVGNKCD  E  +V     +  A        ETSAK    N +V+ +F  L +  K+
Sbjct: 113 ILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKLKS 170

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 71.8 bits (176), Expect = 9e-16
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 18/169 (10%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+SL+  F  G F E Y PT+ + Y      +     L + DT G  ++
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIW-EVIRETKGGANELASIPIMLVGNKCD 127
             ++ LS SK H  ++ ++  +  SLE +R  W E +R          ++P++LVG K D
Sbjct: 63  ERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP------NVPVILVGLKKD 116

Query: 128 ---ETENRE-------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
              E   +        V   + +  A+  G   +ME SA T   V ++F
Sbjct: 117 LRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 68.3 bits (167), Expect = 1e-14
 Identities = 49/165 (29%), Positives = 70/165 (42%), Gaps = 9/165 (5%)

Query: 9   RVVVFGAGGVGKSSLVLRFVK--GTFRESYIPTI--EDTYRQV-ISCNKNICTLQITDTT 63
           +  V G   VGKS+LV  F     TF+++Y  T   +   + V +    +   L I D+ 
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
           G   F  M      +     +VY  T+  S          +R      +     P +LVG
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRT----HSHGLHTPGVLVG 117

Query: 124 NKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           NKCD T+ REV AA+ +A A+     F ETSAK     +  F  L
Sbjct: 118 NKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSL 162

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 67.5 bits (164), Expect = 3e-14
 Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 10/151 (6%)

Query: 31  TFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCT 89
           TF  +Y  TI  D   + +  ++    LQ+ DT G  +F ++    I    A I+VY  T
Sbjct: 4   TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDIT 63

Query: 90  SRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCH 149
           +RQS E      + I   +G       + I LVGNK D  + R+V+  EG  +A+ +   
Sbjct: 64  NRQSFENTTKWIQDILNERG-----KDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTM 118

Query: 150 FMETSAKTNHNVKELF----AELLNLEKNRN 176
           F ETSAK  HN+K LF    A+L NL+ + +
Sbjct: 119 FHETSAKAGHNIKVLFKKIAAKLPNLDNSNS 149

Length = 176

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 67.3 bits (164), Expect = 3e-14
 Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 18/172 (10%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F E Y+PT+ D Y   ++       L + DT G   +
Sbjct: 2   KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 61

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS      F++ +S  +  S + ++  W  + E K  A    ++P +L+G + D 
Sbjct: 62  DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW--VPELKEYA---PNVPYLLIGTQIDL 116

Query: 128 -----------ETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAE 167
                      + + + ++  +G+  AK  G C ++E SA T   +K +F E
Sbjct: 117 RDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 168

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 66.1 bits (161), Expect = 7e-14
 Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 22/174 (12%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 62

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKC 126
             ++ LS  +   F++ +S  S  S E ++  W  E+              P +LVG + 
Sbjct: 63  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-------TPFLLVGTQI 115

Query: 127 D------------ETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
           D            + + + ++   GE  A+      ++E SA T   +K +F E
Sbjct: 116 DLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDE 169

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 64.2 bits (156), Expect = 9e-13
 Identities = 64/229 (27%), Positives = 98/229 (42%), Gaps = 51/229 (22%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY--RQVISCNKNICTLQITDTTGSH 66
           +VV+ G   VGK+SL+ R+++  F+++ + T+   +  +Q    N     + I DT G  
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAFYLKQWGPYN-----ISIWDTAGRE 55

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF  +  +      A IL Y  ++ QSLEEL   +  + +T   ANE       +VGNK 
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT---ANE--DCLFAVVGNKL 110

Query: 127 DETEN-------------------REVSAAEGEAEAKMWGCHFM--------------ET 153
           D TE                    R+V+  + +A  K    + M              ET
Sbjct: 111 DLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFET 170

Query: 154 SAKTNHNVKELFAELLNL-----EKNRNISLQLEKKGQLKGTRKLKEKC 197
           SAKT +NV ELF  L NL        R  + + +    L   ++ K KC
Sbjct: 171 SAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKC 219

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 13/168 (7%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQI 59
                  +++V+ G GG GK++ V R + G F + Y PTI  + +      N        
Sbjct: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYC 66

Query: 60  TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASI 117
            DT G  +F  ++      G   I+++  T+R + + + P W  ++ R  +       +I
Sbjct: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE-------NI 118

Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           PI+L GNK D  +NR+V A +     K     + E SAK+N+N ++ F
Sbjct: 119 PIVLCGNKVD-VKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPF 164

Length = 219

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 61.8 bits (150), Expect = 3e-12
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 17/171 (9%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI----EDTYRQVISCNKNICTLQITDTTG 64
           +V+V G   VGK+ L+ RF K  F ++Y  TI    E    +V+       +LQ+ DT G
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVP---FSLQLWDTAG 58

Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLV 122
             +F  +         A I+V+  T   SLE  R  W  + ++E     N+ +S+ + LV
Sbjct: 59  QERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQ-WLEDALKE-----NDPSSVLLFLV 112

Query: 123 GNKCDETENREVSAAEGEA--EAKMWGCHFMETSAKTNHNVKELFAELLNL 171
           G K D +   + +  E +A   A+     +   SA T  NV++ F  + +L
Sbjct: 113 GTKKDLSSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVASL 163

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 61.2 bits (149), Expect = 4e-12
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G GG GK++ V R + G F + Y+ T+  + +      N+      + DT G  
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           +F  ++     +G   I+++  TSR + + + P W  +++R  +       +IPI+L GN
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 112

Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN-LEKNRNISL 179
           K D  + R+V   +     K     + E SAK+N+N ++ F  L   L  N N+  
Sbjct: 113 KVDIKD-RKVKPKQITFHRKK-NLQYYEISAKSNYNFEKPFLWLARKLLGNPNLEF 166

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 61.6 bits (149), Expect = 5e-12
 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 9/153 (5%)

Query: 14  GAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQ 72
           G GG GK++ V R + G F + Y+ T+  + +  V   N+      + DT G  +F  ++
Sbjct: 2   GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR 61

Query: 73  RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR 132
                +G   I+++  T+R + + + P W      +       +IPI+L GNK D  ++R
Sbjct: 62  DGYYIQGQCAIIMFDVTARVTYKNV-PNWH-----RDLVRVCENIPIVLCGNKVD-VKDR 114

Query: 133 EVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           +V A       K     + + SAK+N+N ++ F
Sbjct: 115 KVKAKSITFHRKK-NLQYYDISAKSNYNFEKPF 146

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 57.4 bits (138), Expect = 2e-10
 Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 21/177 (11%)

Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
           Q+   ++VV G    GK++L+  F K  F E+Y+PT+ + Y      +     L + DT+
Sbjct: 2   QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 61

Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELA-SIPIMLV 122
           GS  +  ++ LS     A ++ +  +  ++L+       V+++ KG   E   +  ++LV
Sbjct: 62  GSPYYDNVRPLSYPDSDAVLICFDISRPETLD------SVLKKWKGEIQEFCPNTKMLLV 115

Query: 123 GNKCD---------ETENRE---VSAAEGEAEAKMWGCH-FMETSAKTNHN-VKELF 165
           G K D         E  N     VS  +G   AK  G   ++E SA  + N V+++F
Sbjct: 116 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 172

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 56.9 bits (137), Expect = 3e-10
 Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 13/178 (7%)

Query: 4   QSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV-ISCNKNICTLQIT 60
           ++ DY  + ++ G   VGK  ++     G+    Y   +   Y+   I  +     LQ+ 
Sbjct: 1   KAYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLW 60

Query: 61  DTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEEL-RPIWEVIRETKGGANELASIP 118
           DT+G  +F  + R S S+G    ILVY  T+R S + + R I E+     G       +P
Sbjct: 61  DTSGQGRFCTIFR-SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPG-------VP 112

Query: 119 IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176
            +LVGN+      R+V+  + +A A+  G  F E S   N N+ E F EL  +   R+
Sbjct: 113 KILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRH 170

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 18/163 (11%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPT----IEDTYRQVISCNKNICTLQITDTTG 64
           ++++ G GGVGK+SL  + +   F      T    ++D         K    L + D  G
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKK--IRLNVWDFGG 60

Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVG 123
              + A  +  ++    ++LV+    R   E  R P W    +  GG +     P++LVG
Sbjct: 61  QEIYHATHQFFLTSRSLYLLVF--DLRTGDEVSRVPYWLRQIKAFGGVS-----PVILVG 113

Query: 124 NKCDETENREVS--AAEGEAEAKMWGCHFMETSAKTNHNVKEL 164
              DE+ + ++   A   +  A +   HF   S K    + EL
Sbjct: 114 THIDESCDEDILKKALNKKFPAIINDIHF--VSCKNGKGIAEL 154

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 10/164 (6%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQ 67
           ++++ G   VGKS LV RF+   +    + T   T Y+           +   DT G  +
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F  M      K HA ILV+  T + + + L   +E +RE +        IP ++V NK D
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR------PEIPCIVVANKID 115

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
              +      +    A+         SA    NV +LF + + L
Sbjct: 116 LDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 21/172 (12%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G    GK++L+  F K +F E+Y+PT+ + Y      +K    L + DT+GS  +
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPYY 62

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELA-SIPIMLVGNKCD 127
             ++ LS     A ++ +  +  ++L+       V+++ KG   E   + P++LVG K D
Sbjct: 63  DNVRPLSYPDSDAVLICFDISRPETLD------SVLKKWKGEVREFCPNTPVLLVGCKSD 116

Query: 128 ---------ETENRE---VSAAEGEAEAKMWGCH-FMETSAKTNHN-VKELF 165
                    E  N+    VS  +G   AK  G   ++E SAKT+ N V+++F
Sbjct: 117 LRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF 168

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ 67
           ++ + G   +GK+SL++++V+G F E YI T+   +  + IS      T  I D  G  +
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F  M  L      A + ++  T + +L     I E  R+ + G N+ A IPI LVG K D
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNS---IKEWYRQAR-GFNKTA-IPI-LVGTKYD 115

Query: 128 E------TENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF----AELLNL 171
                   E  E++  +    AK      +  S   + NV+++F    A++ +L
Sbjct: 116 LFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKVFDL 168

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 48.5 bits (115), Expect = 4e-07
 Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 21/172 (12%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++VV G    GK++L+  F K  + ESY+PT+ + Y      +K+   L + DT+GS  +
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELA-SIPIMLVGNKCD 127
             ++ L+     A ++ +  +  ++L+ +   W+      G   E   +  ++LVG K D
Sbjct: 63  DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQ------GETQEFCPNAKLVLVGCKLD 116

Query: 128 ETEN----REVSAA--------EGEAEAKMWGC-HFMETSAKTNHN-VKELF 165
              +    RE+S          +G   A+  G   ++E S++ + N V+++F
Sbjct: 117 MRTDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVF 168

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 37/171 (21%), Positives = 57/171 (33%), Gaps = 21/171 (12%)

Query: 11  VVFGAGGVGKSSLVLRFVKGTFRE-SYIP-TIEDTYRQVISCNKNICTLQITDTTG---- 64
            +FG   VGKSSL+   +       S IP T  D  R+          + + DT G    
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLG-PVVLIDTPGLDEE 59

Query: 65  ---SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
                +     R    +    +LV         EE +     +RE           P++L
Sbjct: 60  GGLGRERVEEARQVADRADLVLLVVDSDLTPVEEEAKLGL--LRERG--------KPVLL 109

Query: 122 VGNKCDETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELLNL 171
           V NK D     E      E + + +     +  SA     + EL  ++  L
Sbjct: 110 VLNKIDLVPESEEEELLRERKLELLPDLPVIAVSALPGEGIDELRKKIAEL 160

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 39/179 (21%), Positives = 63/179 (35%), Gaps = 33/179 (18%)

Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
           ++V G  G GK+SL+         ES +PT       + + +  +  L+I    GS    
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEI---GGSQNLR 58

Query: 70  AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANEL-------ASIPIMLV 122
              +  +S     I V      + L   R              EL         +P++++
Sbjct: 59  KYWKRYLSGSQGLIFVVDSADSERLPLAR-------------QELHQLLQHPPDLPLVVL 105

Query: 123 GNKCDETENREVS------AAEGEAEAKMW---GCH-FMETSAKTNHNVKELFAELLNL 171
            NK D    R V         E  A  + W   G     + S      VK+L ++L+NL
Sbjct: 106 ANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLINL 164

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 40/225 (17%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G    GK++++    K  + E+Y+PT+ + Y   +   +    L + DT+GS  +
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKC 126
             ++ L  S   A +L +  +  +  +     W  E++       +   S  I+L+G K 
Sbjct: 75  DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEIL-------DYCPSTRILLIGCKT 127

Query: 127 D---------ETENRE---VSAAEGEAEAKMWGCH-FMETSAKTNH-NVKELF--AELLN 170
           D         E  N++   +S  +G A AK  G   ++E SA T+  ++  +F  A LL 
Sbjct: 128 DLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLC 187

Query: 171 LEK---------NRNIS---LQLEKKGQLKGTRKLKEK---CSVM 200
           + K          R++S   L L  + +L  +   KEK   CSVM
Sbjct: 188 INKLSPLAKKSPVRSLSKRLLHLPSRSELISSTFKKEKAKSCSVM 232

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 42/194 (21%)

Query: 7   DYRVVVFGAGGVGKSSLVL-RFVKGTFRES-----YIPTIE--DTYR---QVISCNKNIC 55
             + VV G   VGK+ L+  R    T  +      ++PT+   D YR   +V+  ++++ 
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 56  -----TLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGG 110
                +L++ DT G H     +R +  +    +L +S  S  SL  ++ +W    E +  
Sbjct: 62  DGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMW--YPEIR-- 115

Query: 111 ANELASIPIMLVGNKCD-------------------ETENREVSAAEGEAEAKMWGCHFM 151
            +    +P++LVG K D                         +    G A AK  G  + 
Sbjct: 116 -HFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYY 174

Query: 152 ETSAKTNHNVKELF 165
           ETS  T   VK++F
Sbjct: 175 ETSVVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 43/186 (23%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKG----------TFRESYIPTIEDTYRQVISCNKNICTL 57
             +V+ G   VGKSSLV   +            T +  ++   +  Y +           
Sbjct: 1   RTLVIAGYPNVGKSSLV-NKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRW---------- 49

Query: 58  QITDTTGSHQFPAMQRLSISKGHA------------FILVYSCTSRQSLEELRPIWEVIR 105
           Q+ DT G    P  +R +I    A            F +  S T   S+EE   +++ I+
Sbjct: 50  QVIDTPGILDRPLEERNTIEM-QAITALAHLRAAVLFFIDPSETCGYSIEEQLSLFKEIK 108

Query: 106 ETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
                   L + P+++V NK D     ++S  E E E +  G   ++ S  T   V EL 
Sbjct: 109 P-------LFNKPVIVVLNKIDLLTEEDLSEIEKELEKE--GEEVIKISTLTEEGVDELK 159

Query: 166 AELLNL 171
            +   L
Sbjct: 160 NKACEL 165

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 32/174 (18%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-IEDTYRQVISCNKNI--CTLQITDTTGS 65
           +VV+ G   VGKSSL+        R+  I + I  T R VI    ++    +++ DT G 
Sbjct: 5   KVVIAGKPNVGKSSLLNALAG---RDRAIVSDIAGTTRDVIEEEIDLGGIPVRLIDTAGL 61

Query: 66  HQFP-AMQRLSISKGHAFI-------LVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
            +    ++++ I +    I       LV   +     E+L  +              A  
Sbjct: 62  RETEDEIEKIGIERAREAIEEADLVLLVVDASEGLDEEDLEIL-----------ELPAKK 110

Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
           P+++V NK D   + E  +          G   +  SAKT   + EL   LL L
Sbjct: 111 PVIVVLNKSDLLSDAEGISELN-------GKPIIAISAKTGEGIDELKEALLEL 157

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 13/162 (8%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++ + G    GKS+LV R++ G++ +   P      ++V+   ++   L I D  G+   
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLL-IRDEGGA--- 57

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG--NKC 126
           P  Q        A I V+S     S + +  ++  +   +  +     IP++LVG  +  
Sbjct: 58  PDAQFAGWVD--AVIFVFSLEDEASFQTVYRLYHQLSSYRNISE----IPLILVGTQDAI 111

Query: 127 DETENREVSAAEGEA-EAKMWGCHFMETSAKTNHNVKELFAE 167
             +  R +  A      A M  C + ET A    NV+ +F E
Sbjct: 112 SASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 38.9 bits (92), Expect = 5e-04
 Identities = 17/59 (28%), Positives = 24/59 (40%)

Query: 113 ELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
            LA  P ++V NK D  +  E      E   ++ G      SA T   + EL  +L  L
Sbjct: 111 GLAEKPRIVVLNKIDLLDAEERFEKLKELLKELKGKKVFPISALTGEGLDELLKKLAKL 169

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 29/175 (16%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-----EDTYRQVISCNKNICTLQITDTT 63
           R+++ G  G GK++++ +   G    + IPTI        Y+ V           + D  
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVETVEYKNV--------KFTVWDVG 51

Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSR----QSLEELRPIWEVIRETKGGANELASIPI 119
           G  +   + +         I V   + R    ++  EL    +++ E      EL   P+
Sbjct: 52  GQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELH---KLLNE-----EELKGAPL 103

Query: 120 MLVGNKCDETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
           +++ NK D        E+    G    K    H    SA T   + E    L+  
Sbjct: 104 LILANKQDLPGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0084|consensus	205		100.0
KOG0092|consensus	200		100.0
KOG0094|consensus	221		100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
KOG0078|consensus	207		100.0
KOG0394|consensus	210		100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
KOG0079|consensus	198		100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
KOG0080|consensus	209		100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
KOG0098|consensus	216		100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
KOG0087|consensus	222		100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
KOG0093|consensus	193		100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
KOG0088|consensus	218		100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	100.0
KOG0095|consensus	213		100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
KOG0086|consensus	214		100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
KOG0395|consensus	196		100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.98
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.98
KOG0091|consensus	213		99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
KOG0081|consensus	219		99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
KOG0393|consensus	198		99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
KOG0097|consensus	215		99.96
KOG0083|consensus	192		99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
KOG4252|consensus	246		99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
PLN00023	334	GTP-binding protein; Provisional	99.94
PTZ00099	176	rab6; Provisional	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.93
KOG0073|consensus	185		99.93
KOG0070|consensus	181		99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
PRK04213	201	GTP-binding protein; Provisional	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
PRK15494	339	era GTPase Era; Provisional	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.9
KOG0075|consensus	186		99.9
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.89
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.89
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.89
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
PRK11058	426	GTPase HflX; Provisional	99.88
PRK00089	292	era GTPase Era; Reviewed	99.88
KOG0071|consensus	180		99.88
PRK12298	390	obgE GTPase CgtA; Reviewed	99.88
KOG3883|consensus	198		99.88
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.88
PRK12296	500	obgE GTPase CgtA; Reviewed	99.88
COG1159	298	Era GTPase [General function prediction only]	99.88
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.88
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.86
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.86
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
CHL00189	742	infB translation initiation factor 2; Provisional	99.85
KOG0076|consensus	197		99.85
KOG1673|consensus	205		99.85
COG1160	444	Predicted GTPases [General function prediction onl	99.84
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.84
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.84
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.84
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.84
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.84
PRK05306	787	infB translation initiation factor IF-2; Validated	99.84
KOG1423|consensus	379		99.83
KOG0072|consensus	182		99.83
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.83
KOG0074|consensus	185		99.82
KOG0096|consensus	216		99.82
PRK05433	600	GTP-binding protein LepA; Provisional	99.82
COG0486	454	ThdF Predicted GTPase [General function prediction	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.81
KOG4423|consensus	229		99.81
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.8
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.8
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.8
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.8
PRK12317	425	elongation factor 1-alpha; Reviewed	99.79
PRK10218	607	GTP-binding protein; Provisional	99.79
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.79
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.79
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.79
COG2229	187	Predicted GTPase [General function prediction only	99.79
COG2262	411	HflX GTPases [General function prediction only]	99.79
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.78
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.78
COG0218	200	Predicted GTPase [General function prediction only	99.78
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.78
KOG1707|consensus	625		99.77
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.77
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.77
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.77
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.76
COG1084	346	Predicted GTPase [General function prediction only	99.76
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.76
KOG1489|consensus	366		99.75
PRK04004	586	translation initiation factor IF-2; Validated	99.75
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.75
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.73
COG1163	365	DRG Predicted GTPase [General function prediction	99.73
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.73
COG0536	369	Obg Predicted GTPase [General function prediction	99.73
PRK12736	394	elongation factor Tu; Reviewed	99.72
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.7
PRK12735	396	elongation factor Tu; Reviewed	99.7
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.7
CHL00071	409	tufA elongation factor Tu	99.7
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.69
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.69
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.68
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.68
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.67
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.66
PRK00049	396	elongation factor Tu; Reviewed	99.66
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.66
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.66
COG3596	296	Predicted GTPase [General function prediction only	99.66
KOG0077|consensus	193		99.66
PRK13351	687	elongation factor G; Reviewed	99.65
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.65
PLN03127	447	Elongation factor Tu; Provisional	99.64
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.64
PLN00043	447	elongation factor 1-alpha; Provisional	99.64
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.64
PTZ00141	446	elongation factor 1- alpha; Provisional	99.63
PRK09866	741	hypothetical protein; Provisional	99.63
PLN03126	478	Elongation factor Tu; Provisional	99.63
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.62
PRK09602	396	translation-associated GTPase; Reviewed	99.62
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.61
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.61
KOG0462|consensus	650		99.59
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.58
KOG1191|consensus	531		99.58
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.57
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.57
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.56
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.55
PRK12739	691	elongation factor G; Reviewed	99.55
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.55
KOG0090|consensus	238		99.54
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.53
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.52
KOG1490|consensus	620		99.51
PRK13768	253	GTPase; Provisional	99.5
KOG1145|consensus	683		99.5
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.49
PRK12740	668	elongation factor G; Reviewed	99.48
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.47
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.47
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.46
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.46
PTZ00258	390	GTP-binding protein; Provisional	99.45
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.45
KOG1532|consensus	366		99.44
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.44
KOG0082|consensus	354		99.44
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.43
PRK00007	693	elongation factor G; Reviewed	99.43
KOG1707|consensus	625		99.41
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.4
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.4
PRK14845	1049	translation initiation factor IF-2; Provisional	99.38
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.37
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.37
KOG0461|consensus	522		99.36
KOG3886|consensus	295		99.34
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.34
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.33
KOG3905|consensus	473		99.33
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.32
PRK07560	731	elongation factor EF-2; Reviewed	99.32
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.3
PRK09601	364	GTP-binding protein YchF; Reviewed	99.3
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.3
PTZ00416	836	elongation factor 2; Provisional	99.3
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.29
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.27
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.27
KOG1486|consensus	364		99.25
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.23
KOG0705|consensus	749		99.22
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.21
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.19
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.15
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.13
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.13
KOG0085|consensus	359		99.11
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.11
KOG0410|consensus	410		99.11
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.08
KOG0458|consensus	603		99.06
KOG0468|consensus	971		99.05
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.04
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.02
KOG1487|consensus	358		98.98
KOG1144|consensus	1064		98.98
KOG3887|consensus	347		98.98
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.98
KOG0099|consensus	379		98.97
PRK12289	352	GTPase RsgA; Reviewed	98.97
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.97
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.94
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.93
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.9
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.88
PRK12288	347	GTPase RsgA; Reviewed	98.88
PRK00098	298	GTPase RsgA; Reviewed	98.85
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.85
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.83
KOG1954|consensus	532		98.81
KOG2655|consensus	366		98.8
KOG0448|consensus	749		98.8
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.76
KOG2486|consensus	320		98.76
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.75
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.74
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.73
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.71
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.71
KOG1547|consensus	336		98.71
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.7
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.68
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.67
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.67
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.67
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.66
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.66
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.66
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.65
cd03112	158	CobW_like The function of this protein family is u	98.64
KOG1491|consensus	391		98.62
KOG0466|consensus	466		98.61
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.59
KOG1143|consensus	591		98.59
PRK14974	336	cell division protein FtsY; Provisional	98.58
COG1161	322	Predicted GTPases [General function prediction onl	98.57
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.57
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.56
COG0523	323	Putative GTPases (G3E family) [General function pr	98.53
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.52
PRK10416	318	signal recognition particle-docking protein FtsY;	98.47
PRK12288	347	GTPase RsgA; Reviewed	98.45
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.45
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.44
PRK01889	356	GTPase RsgA; Reviewed	98.44
PRK12289	352	GTPase RsgA; Reviewed	98.43
KOG0447|consensus	980		98.42
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.4
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.39
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.39
cd03114	148	ArgK-like The function of this protein family is u	98.39
KOG0463|consensus	641		98.35
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.34
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.34
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.31
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.3
KOG0460|consensus	449		98.26
COG1162	301	Predicted GTPases [General function prediction onl	98.26
KOG1424|consensus	562		98.25
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.25
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.24
PRK13796	365	GTPase YqeH; Provisional	98.23
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.23
COG1162	301	Predicted GTPases [General function prediction onl	98.21
PRK13796	365	GTPase YqeH; Provisional	98.21
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.2
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.2
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	98.19
COG3523	1188	IcmF Type VI protein secretion system component Va	98.18
cd03110	179	Fer4_NifH_child This protein family's function is	98.16
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.14
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.13
PRK00098	298	GTPase RsgA; Reviewed	98.12
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.11
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.06
PRK13695	174	putative NTPase; Provisional	98.02
KOG2484|consensus	435		97.97
KOG0467|consensus	887		97.96
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.96
TIGR00959	428	ffh signal recognition particle protein. This mode	97.95
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.93
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.92
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.92
PRK10867	433	signal recognition particle protein; Provisional	97.87
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.86
KOG1534|consensus	273		97.85
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.84
KOG0465|consensus	721		97.83
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.81
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.78
PRK08118	167	topology modulation protein; Reviewed	97.77
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.77
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.76
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.74
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.72
PRK07261	171	topology modulation protein; Provisional	97.7
KOG2485|consensus	335		97.7
KOG3859|consensus	406		97.69
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.68
KOG0464|consensus	753		97.68
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.66
KOG2743|consensus	391		97.64
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.62
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.58
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.58
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.57
KOG4273|consensus	418		97.57
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.56
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.55
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.54
KOG2423|consensus	572		97.53
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.5
PRK14738	206	gmk guanylate kinase; Provisional	97.5
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.5
cd02036	179	MinD Bacterial cell division requires the formatio	97.49
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.49
cd03111	106	CpaE_like This protein family consists of proteins	97.48
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.45
KOG1970|consensus	634		97.44
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.44
PRK06217	183	hypothetical protein; Validated	97.43
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.41
PRK10646	153	ADP-binding protein; Provisional	97.41
KOG0780|consensus	483		97.4
PRK14530	215	adenylate kinase; Provisional	97.38
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.38
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.38
PF00004	132	AAA: ATPase family associated with various cellula	97.37
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.37
PRK03839	180	putative kinase; Provisional	97.36
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.35
PRK14737	186	gmk guanylate kinase; Provisional	97.35
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.35
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.34
PRK13851	344	type IV secretion system protein VirB11; Provision	97.33
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.33
PRK13949	169	shikimate kinase; Provisional	97.32
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.32
PRK05480	209	uridine/cytidine kinase; Provisional	97.31
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.31
PRK05541	176	adenylylsulfate kinase; Provisional	97.31
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.31
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.3
smart00382	148	AAA ATPases associated with a variety of cellular	97.28
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.27
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.27
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.27
PRK14531	183	adenylate kinase; Provisional	97.26
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.26
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.25
KOG0469|consensus	842		97.25
PRK08233	182	hypothetical protein; Provisional	97.25
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.23
PTZ00088	229	adenylate kinase 1; Provisional	97.21
COG0802	149	Predicted ATPase or kinase [General function predi	97.21
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.21
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.21
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.19
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.18
PRK14532	188	adenylate kinase; Provisional	97.18
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.18
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.18
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.17
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.17
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.17
PRK06547	172	hypothetical protein; Provisional	97.16
PRK02496	184	adk adenylate kinase; Provisional	97.15
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.15
PRK01889	356	GTPase RsgA; Reviewed	97.14
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.14
PRK00300	205	gmk guanylate kinase; Provisional	97.14

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.1e-38  Score=226.69  Aligned_cols=190  Identities=42%  Similarity=0.690  Sum_probs=164.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      ||+++|.+|||||||++++..+.+...+.++.+..+......++..+.+++|||||++++..++..++..+|++++|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            68999999999999999999988888888888877766667788888999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHH
Q psy8700          89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL  168 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i  168 (200)
                      +++.++..+..|+..+......  ...+.|+++|+||+|+.+.......+...++...+++++++||++|.|++++|+++
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~--~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l  158 (190)
T cd04144          81 TSRSTFERVERFREQIQRVKDE--SAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL  158 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcc--cCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999888776521  13568999999999998766666667777777888999999999999999999999


Q ss_pred             HHHHhccchhHHHhhhcccccccccCCccccC
Q psy8700         169 LNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM  200 (200)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  200 (200)
                      .+.+.++......-...+...++|+++||+||
T Consensus       159 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (190)
T cd04144         159 VRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM  190 (190)
T ss_pred             HHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence            99887777666555666777777778999886

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0084|consensus

Probab=100.00  E-value=2e-38  Score=215.36  Aligned_cols=172  Identities=35%  Similarity=0.527  Sum_probs=160.1

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA   81 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   81 (200)
                      +-+-.+||+++|+.|+|||+|+.|+..+.|.+.|..|++..+ ..++..+++.+++++|||+|+++++.+...|++++++
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG   84 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   84 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence            345579999999999999999999999999999999999555 5688899999999999999999999999999999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCc-EEEecccCCCc
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCH-FMETSAKTNHN  160 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~~  160 (200)
                      +|+|||+++.++|..+..|+..+.+...     ...|.++|+||+|+.+.+.++..+++.++...+++ ++++||+++.|
T Consensus        85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-----~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~N  159 (205)
T KOG0084|consen   85 IIFVYDITKQESFNNVKRWIQEIDRYAS-----ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTN  159 (205)
T ss_pred             EEEEEEcccHHHhhhHHHHHHHhhhhcc-----CCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccC
Confidence            9999999999999999999999999884     66899999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhccchhH
Q psy8700         161 VKELFAELLNLEKNRNISL  179 (200)
Q Consensus       161 i~~~~~~i~~~~~~~~~~~  179 (200)
                      +.+.|..|...++++....
T Consensus       160 Ve~~F~~la~~lk~~~~~~  178 (205)
T KOG0084|consen  160 VEDAFLTLAKELKQRKGLH  178 (205)
T ss_pred             HHHHHHHHHHHHHHhcccC
Confidence            9999999999888776544

>KOG0092|consensus

Probab=100.00  E-value=7.9e-38  Score=211.68  Aligned_cols=171  Identities=35%  Similarity=0.510  Sum_probs=157.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ...+||+++|+.++|||||+-|+..+.+.+...||++ .+....+.+++..+++.+|||+|+++|.++.+.|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            4579999999999999999999999999888889998 455678888899999999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|||+++.+||..+..|...+.+..     .++.-+.+|+||+|+.+.+++...+...++...|..|+++||+++.|+++
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~-----~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~  157 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQA-----SPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNE  157 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhC-----CCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHH
Confidence            9999999999999999999999988     36677778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchhHH
Q psy8700         164 LFAELLNLEKNRNISLQ  180 (200)
Q Consensus       164 ~~~~i~~~~~~~~~~~~  180 (200)
                      +|..|.+.+..+.....
T Consensus       158 if~~Ia~~lp~~~~~~~  174 (200)
T KOG0092|consen  158 IFQAIAEKLPCSDPQER  174 (200)
T ss_pred             HHHHHHHhccCcccccc
Confidence            99999999987765443

>KOG0094|consensus

Probab=100.00  E-value=2.5e-37  Score=209.37  Aligned_cols=168  Identities=34%  Similarity=0.529  Sum_probs=156.8

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      +.+|++++|+.++||||||+|+..+.+..+|.+|++ ++...++.+.+.++.+++|||+||++++++.+.|++++.++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            458999999999999999999999999999999999 5557788999999999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |||+++..+|.+...|++.+....+    ..+.-+++|+||.||.+.+++...+....+++.+..|.++||+.|.||..+
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~g----s~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~l  176 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRERG----SDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQL  176 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhccC----CCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence            9999999999999999999998885    345778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccch
Q psy8700         165 FAELLNLEKNRNI  177 (200)
Q Consensus       165 ~~~i~~~~~~~~~  177 (200)
                      |..|...+.....
T Consensus       177 FrrIaa~l~~~~~  189 (221)
T KOG0094|consen  177 FRRIAAALPGMEV  189 (221)
T ss_pred             HHHHHHhccCccc
Confidence            9999998877654

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=6.2e-36  Score=212.51  Aligned_cols=161  Identities=30%  Similarity=0.508  Sum_probs=139.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      .+||+++|+.|||||||+.++..+.+.+.+.|+.+..+...+.+++..+.+++|||+|+++++.++..+++++|++++||
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy   82 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF   82 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence            58999999999999999999999999888999988766666667888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhC-CcEEE
Q psy8700          87 SCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWG-CHFME  152 (200)
Q Consensus        87 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~  152 (200)
                      |++++.+++.+.. |...+...      .++.|++||+||.|+.+..            .+...+...+++..+ ++|++
T Consensus        83 dit~~~Sf~~~~~~w~~~i~~~------~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e  156 (191)
T cd01875          83 SIASPSSYENVRHKWHPEVCHH------CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLE  156 (191)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh------CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence            9999999999975 55545432      2568999999999996542            244556777888888 48999


Q ss_pred             ecccCCCcHHHHHHHHHHHHh
Q psy8700         153 TSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       153 vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      +||++|.|++++|+++.+.+.
T Consensus       157 ~SAk~g~~v~e~f~~l~~~~~  177 (191)
T cd01875         157 CSALNQDGVKEVFAEAVRAVL  177 (191)
T ss_pred             eCCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998774

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0078|consensus

Probab=100.00  E-value=4.1e-36  Score=206.92  Aligned_cols=174  Identities=35%  Similarity=0.528  Sum_probs=161.4

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      -+..+||+++|++|||||+++.++..+.+...+..+++-.+ -.++.+++..+.+++|||+|+++++.+...|++.|+++
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi   88 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI   88 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence            45679999999999999999999999999999999999544 57888999999999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|||+++..+|.++..|+..+.+...     ...|.++|+||+|+..++++.....+.++.++|+.|+++||+.|.||.
T Consensus        89 ~LvyDitne~Sfeni~~W~~~I~e~a~-----~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~  163 (207)
T KOG0078|consen   89 LLVYDITNEKSFENIRNWIKNIDEHAS-----DDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIE  163 (207)
T ss_pred             EEEEEccchHHHHHHHHHHHHHHhhCC-----CCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence            999999999999999999999999884     689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchhHHHh
Q psy8700         163 ELFAELLNLEKNRNISLQLE  182 (200)
Q Consensus       163 ~~~~~i~~~~~~~~~~~~~~  182 (200)
                      ++|-.+.+.+..+...-+++
T Consensus       164 eaF~~La~~i~~k~~~~~~~  183 (207)
T KOG0078|consen  164 EAFLSLARDILQKLEDAELE  183 (207)
T ss_pred             HHHHHHHHHHHhhcchhhhc
Confidence            99999999998766655544

>KOG0394|consensus

Probab=100.00  E-value=2.4e-36  Score=202.70  Aligned_cols=173  Identities=28%  Similarity=0.418  Sum_probs=157.5

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      +...+||+++|++|+|||||+|++...+|...|..+++ ++..+.+.+++..+.+++|||+|++++.++...+++++|.+
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            57889999999999999999999999999999999999 66678999999999999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc--cccCHHHHHHHHHHhC-CcEEEecccCCC
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN--REVSAAEGEAEAKMWG-CHFMETSAKTNH  159 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~vSa~~~~  159 (200)
                      ++|+|++++.+++.+..|...+...... ..+...|+||++||+|+.+.  +.++...++.++...| +|||++||+...
T Consensus        86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~-~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLENWRKEFLIQASP-QDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             EEEeecCChhhhccHHHHHHHHHHhcCC-CCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            9999999999999999999998887752 34677899999999999763  6788888999998876 699999999999


Q ss_pred             cHHHHHHHHHHHHhccch
Q psy8700         160 NVKELFAELLNLEKNRNI  177 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~~~~  177 (200)
                      |+.++|+.+.+...+...
T Consensus       165 NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  165 NVDEAFEEIARRALANED  182 (210)
T ss_pred             cHHHHHHHHHHHHHhccc
Confidence            999999999998876654

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.3e-35  Score=210.61  Aligned_cols=166  Identities=43%  Similarity=0.730  Sum_probs=147.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||++++..+.+...+.++.+..+.....+++..+.+.+|||||++++..++..++..++++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            56799999999999999999999999888888888887777777788888999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|+++++++..+..|+..+.+...    ....|+++|+||.|+.+...+...+...+....+.+++++||++|.|+.++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~----~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~  158 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKD----KDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEA  158 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHH
Confidence            9999999999999999988876642    357899999999999776666666667777777889999999999999999


Q ss_pred             HHHHHHHHhc
Q psy8700         165 FAELLNLEKN  174 (200)
Q Consensus       165 ~~~i~~~~~~  174 (200)
                      |+++.+.+..
T Consensus       159 ~~~l~~~l~~  168 (189)
T PTZ00369        159 FYELVREIRK  168 (189)
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=7.6e-36  Score=210.89  Aligned_cols=167  Identities=26%  Similarity=0.363  Sum_probs=147.1

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +..+||+++|..|||||||+.++..+.+...+.++.+..+ ...+.+++..+.+++|||+|++++..++..+++++|+++
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            3569999999999999999999999888777777765444 345667888899999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|||++++.++..+..|+..+....      +..|++||+||.|+.+.+.+...+...+++..+++|+++||++|.||++
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~~------~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~  157 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEHA------PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITE  157 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC------CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence            9999999999999999998886543      5689999999999988777788888899998999999999999999999


Q ss_pred             HHHHHHHHHhccch
Q psy8700         164 LFAELLNLEKNRNI  177 (200)
Q Consensus       164 ~~~~i~~~~~~~~~  177 (200)
                      +|+++.+.+..++.
T Consensus       158 ~F~~l~~~i~~~~~  171 (189)
T cd04121         158 SFTELARIVLMRHG  171 (189)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999997765444

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=2.3e-35  Score=213.60  Aligned_cols=164  Identities=24%  Similarity=0.376  Sum_probs=145.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      ..+||+++|++|||||||++++..+.+...+.|+.+..+...+.+++..+.+++|||+|++.+..+...++.+++++++|
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV   91 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC   91 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence            56899999999999999999999999988999998877766777888999999999999999999999999999999999


Q ss_pred             eeCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc------------ccccCHHHHHHHHHHhCC-cEE
Q psy8700          86 YSCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETE------------NREVSAAEGEAEAKMWGC-HFM  151 (200)
Q Consensus        86 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~  151 (200)
                      ||++++.++..+ ..|+..+....      +..|+++|+||+|+.+            ...+...++..+++..++ .|+
T Consensus        92 yDit~~~Sf~~~~~~w~~~i~~~~------~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~  165 (232)
T cd04174          92 FDISRPETVDSALKKWKAEIMDYC------PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYL  165 (232)
T ss_pred             EECCChHHHHHHHHHHHHHHHHhC------CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEE
Confidence            999999999984 77877776644      4579999999999864            245677789999999998 699


Q ss_pred             EecccCCC-cHHHHHHHHHHHHhcc
Q psy8700         152 ETSAKTNH-NVKELFAELLNLEKNR  175 (200)
Q Consensus       152 ~vSa~~~~-~i~~~~~~i~~~~~~~  175 (200)
                      +|||++|. |++++|..+...+.++
T Consensus       166 EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         166 ECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             EccCCcCCcCHHHHHHHHHHHHHHh
Confidence            99999997 8999999999887654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=3.2e-35  Score=209.56  Aligned_cols=162  Identities=32%  Similarity=0.484  Sum_probs=143.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      ++|+++|..|||||||++++..+.+...+.++.+ +.....+..++..+.+++|||+|++++..++..+++++|++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            4799999999999999999999999888888887 444556777888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHh-CCcEEEecccCCCcHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~~~  165 (200)
                      |++++++++.+..|+..+....     ..+.|+++|+||+|+...+++...+...+++.. ++.|++|||++|.||.++|
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~-----~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F  155 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYA-----SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIF  155 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-----CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence            9999999999999988776554     366899999999999877777777777777764 7899999999999999999


Q ss_pred             HHHHHHHhc
Q psy8700         166 AELLNLEKN  174 (200)
Q Consensus       166 ~~i~~~~~~  174 (200)
                      +++.+.+..
T Consensus       156 ~~l~~~~~~  164 (202)
T cd04120         156 LKLVDDILK  164 (202)
T ss_pred             HHHHHHHHH
Confidence            999987754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=4.2e-35  Score=206.13  Aligned_cols=163  Identities=26%  Similarity=0.419  Sum_probs=145.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ++..+||+++|++|+|||||++++..+.+...+.|+....+...+.+++..+.+++|||+|++.+..+...+++++|+++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            45679999999999999999999999999888999998777777778888999999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc------------ccccCHHHHHHHHHHhCC-c
Q psy8700          84 LVYSCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETE------------NREVSAAEGEAEAKMWGC-H  149 (200)
Q Consensus        84 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~  149 (200)
                      +|||++++.++..+ ..|...+....      +..|++||+||.|+.+            ...+...++..+++..++ +
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~------~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~  155 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC------PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT  155 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC------CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence            99999999999997 67777776643      5689999999999864            235777889999999996 8


Q ss_pred             EEEecccCCCc-HHHHHHHHHHHH
Q psy8700         150 FMETSAKTNHN-VKELFAELLNLE  172 (200)
Q Consensus       150 ~~~vSa~~~~~-i~~~~~~i~~~~  172 (200)
                      |++|||++|.| |+++|+.+.+.+
T Consensus       156 ~~E~SAk~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         156 YIECSALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             EEECCcCCCCCCHHHHHHHHHHHH
Confidence            99999999998 999999998854

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=4.8e-35  Score=204.69  Aligned_cols=164  Identities=36%  Similarity=0.630  Sum_probs=147.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      .+||+++|.+|||||||++++..+.+...+.++.+..+...+.+++..+.+++|||||++.+..++..++..+|++++||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            58999999999999999999999998888888888777767777888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |++++.++..+..|+..+.+...    .++.|+++|+||.|+.+...+...+...+++..+++|+++||++|.||+++|+
T Consensus        82 d~~~~~Sf~~~~~~~~~i~~~~~----~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~  157 (172)
T cd04141          82 SVTDRHSFQEASEFKKLITRVRL----TEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFH  157 (172)
T ss_pred             ECCchhHHHHHHHHHHHHHHhcC----CCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHH
Confidence            99999999999988887776542    35689999999999987777777788888888899999999999999999999


Q ss_pred             HHHHHHhc
Q psy8700         167 ELLNLEKN  174 (200)
Q Consensus       167 ~i~~~~~~  174 (200)
                      ++.+.+.+
T Consensus       158 ~l~~~~~~  165 (172)
T cd04141         158 GLVREIRR  165 (172)
T ss_pred             HHHHHHHH
Confidence            99987754

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=6.2e-35  Score=207.00  Aligned_cols=180  Identities=30%  Similarity=0.520  Sum_probs=147.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeC-CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCN-KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|||||||++++.++.+...+.++....+...+... +..+.+.+|||||++++..++..++.++|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            58999999999999999999999988888888776655455554 67789999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc----ccCHHHHHHHHHHhCC-cEEEecccCCCc
Q psy8700          87 SCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENR----EVSAAEGEAEAKMWGC-HFMETSAKTNHN  160 (200)
Q Consensus        87 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~-~~~~vSa~~~~~  160 (200)
                      |++++++++.+.. |...+...      .++.|+++|+||.|+....    .....+...++...++ +++++||++|.|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~------~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  154 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHF------CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN  154 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh------CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence            9999999999875 44444332      2568999999999986532    3445667777788888 999999999999


Q ss_pred             HHHHHHHHHHHHhccchhHHHhhhcccccccccCCccccC
Q psy8700         161 VKELFAELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM  200 (200)
Q Consensus       161 i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  200 (200)
                      +.++|+.+.+.+.......       ...+++++.+|++|
T Consensus       155 v~~~f~~l~~~~~~~~~~~-------~~~~~~~~~~c~~~  187 (187)
T cd04132         155 VEEVFDTAIEEALKKEGKA-------IFKKKKKKRKCVVL  187 (187)
T ss_pred             HHHHHHHHHHHHHhhhhhh-------hhccCCCCcccccC
Confidence            9999999999885444322       55566667888886

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=8.4e-35  Score=203.45  Aligned_cols=159  Identities=30%  Similarity=0.554  Sum_probs=141.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|.+|+|||||+.++..+.+...+.|+.+..+...+..++..+.+++|||+|++++..+...++++++++++|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            69999999999999999999999998889999987777667778888999999999999999999999999999999999


Q ss_pred             CCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc----------ccCHHHHHHHHHHhCC-cEEEecc
Q psy8700          88 CTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETENR----------EVSAAEGEAEAKMWGC-HFMETSA  155 (200)
Q Consensus        88 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~vSa  155 (200)
                      ++++.++..+ ..|+..+....      ++.|++||+||.|+.+..          .+...+...+++..++ +|++|||
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~------~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  155 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYA------PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSS  155 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCC
Confidence            9999999998 57887776543      468999999999996543          3667788888888887 6999999


Q ss_pred             cCCCcHHHHHHHHHHHH
Q psy8700         156 KTNHNVKELFAELLNLE  172 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~~  172 (200)
                      ++|.||+++|+.+.+.+
T Consensus       156 k~~~nV~~~F~~~~~~~  172 (176)
T cd04133         156 KTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             CcccCHHHHHHHHHHHH
Confidence            99999999999999865

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=9.9e-35  Score=206.10  Aligned_cols=186  Identities=31%  Similarity=0.434  Sum_probs=156.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+++||++|++.+..++..++.++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999988776777776444 455667777889999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |+++++++..+..|+..+.....     ...|+++++||.|+.+...........++...+++++++||++|.|++++|+
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~-----~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~  155 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYAR-----ENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFI  155 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC-----CCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999888876552     4589999999999987776667777777777888999999999999999999


Q ss_pred             HHHHHHhccchhHHHhhhcccccccccCCcccc
Q psy8700         167 ELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSV  199 (200)
Q Consensus       167 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  199 (200)
                      ++.+.+..+....++ .....+++..++.+|++
T Consensus       156 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  187 (188)
T cd04125         156 LLVKLIIKRLEEQEL-SPKNIKQQFKKKNNCFI  187 (188)
T ss_pred             HHHHHHHHHhhcCcC-CccccccccccccCccc
Confidence            999998765543333 33666677777788876

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.4e-34  Score=206.90  Aligned_cols=167  Identities=32%  Similarity=0.473  Sum_probs=144.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +..+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++.++++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            4579999999999999999999999888777788876443 345566777789999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|+++++++..+..|+..+....      ...|++||+||+|+.........+...+....+.+++++||++|.||.+
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~------~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~  157 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNC------DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEE  157 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC------CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHH
Confidence            9999999999999999988876544      5689999999999987666666777777777889999999999999999


Q ss_pred             HHHHHHHHHhccch
Q psy8700         164 LFAELLNLEKNRNI  177 (200)
Q Consensus       164 ~~~~i~~~~~~~~~  177 (200)
                      +|++|.+.+...+.
T Consensus       158 lf~~l~~~~~~~~~  171 (199)
T cd04110         158 MFNCITELVLRAKK  171 (199)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999998865543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=3e-34  Score=205.57  Aligned_cols=173  Identities=27%  Similarity=0.387  Sum_probs=146.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeC-CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCN-KNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +||+++|++|||||||+++|.++.+...+.++.+..+ ...+..+ +..+.+.+|||||++.+..++..++.+++++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            6899999999999999999999988888888887444 4455666 7789999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC-CcEEEecccCCCcHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKEL  164 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~~  164 (200)
                      ||+++++++..+..|+..+....... .....|++||+||+|+.+.......+...+++..+ ..++++||++|.|++++
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~  159 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLP-NGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA  159 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhccc-CCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence            99999999999999988877643211 13568999999999997666667777788888888 58999999999999999


Q ss_pred             HHHHHHHHhccchhHHH
Q psy8700         165 FAELLNLEKNRNISLQL  181 (200)
Q Consensus       165 ~~~i~~~~~~~~~~~~~  181 (200)
                      |+++.+.+.........
T Consensus       160 f~~l~~~l~~~~~~~~~  176 (201)
T cd04107         160 MRFLVKNILANDKNLQQ  176 (201)
T ss_pred             HHHHHHHHHHhchhhHh
Confidence            99999988765544433

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1.6e-34  Score=200.52  Aligned_cols=162  Identities=50%  Similarity=0.861  Sum_probs=143.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      ++||+++|++|||||||++++..+.+...+.++....+...+..++..+.+++|||||++++..++..++++++++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            47999999999999999999999988888888887777777778888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |++++.+++.+..|+..+.....    ..+.|+++|+||+|+.+.......+...+.+.++.+++++||++|.|+.++|+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  156 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKD----TENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFA  156 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999988877652    46789999999999977666666666667777788999999999999999999


Q ss_pred             HHHHHH
Q psy8700         167 ELLNLE  172 (200)
Q Consensus       167 ~i~~~~  172 (200)
                      ++.+.+
T Consensus       157 ~l~~~~  162 (163)
T cd04136         157 DLVRQI  162 (163)
T ss_pred             HHHHhc
Confidence            998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.8e-34  Score=207.90  Aligned_cols=165  Identities=23%  Similarity=0.420  Sum_probs=141.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|++|||||||++++..+.+...|.|+....+...+.+++..+.+.+|||+|++.|..++..++.++|++++|||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd   81 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD   81 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence            79999999999999999999999998899999987777777788889999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cEEEec
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HFMETS  154 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~vS  154 (200)
                      ++++++++.+..+|.......     .+..|++||+||+|+.+.            ..+...+...+++..++ +|++||
T Consensus        82 is~~~Sf~~i~~~w~~~~~~~-----~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~S  156 (222)
T cd04173          82 ISRPETLDSVLKKWQGETQEF-----CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECS  156 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcC
Confidence            999999999966564433333     367899999999999652            12455678888888886 899999


Q ss_pred             ccCCCc-HHHHHHHHHHHHhccch
Q psy8700         155 AKTNHN-VKELFAELLNLEKNRNI  177 (200)
Q Consensus       155 a~~~~~-i~~~~~~i~~~~~~~~~  177 (200)
                      |+++.+ |+++|+.+......+..
T Consensus       157 Ak~~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         157 SRSSERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             CCcCCcCHHHHHHHHHHHHHhccC
Confidence            999885 99999999997765443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=2.1e-34  Score=207.50  Aligned_cols=182  Identities=32%  Similarity=0.417  Sum_probs=146.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|.+|||||||++++..+.+.. +.++.+..+...   ....+.+.+|||+|++.+..+...++.+++++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            589999999999999999999988854 456665433211   1245789999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc-------------------ccccCHHHHHHHHHHhC-
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE-------------------NREVSAAEGEAEAKMWG-  147 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~-  147 (200)
                      ++++.++..+..||..+.+..     .+..|++||+||+|+.+                   .+++...+...+++..+ 
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~~-----~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~  151 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDTA-----NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK  151 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc
Confidence            999999999999998877643     35689999999999975                   45666777888887765 


Q ss_pred             -------------CcEEEecccCCCcHHHHHHHHHHHHhccchhHHHhhh-----cccccccccCCccc
Q psy8700         148 -------------CHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK-----GQLKGTRKLKEKCS  198 (200)
Q Consensus       148 -------------~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~c~  198 (200)
                                   ++|++|||++|.||+++|..+.+.+.+-......++.     ..+.+.++++.+|+
T Consensus       152 ~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         152 YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCcccCCCCCC
Confidence                         6899999999999999999999887654444433333     36677777766553

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=2.1e-34  Score=208.27  Aligned_cols=166  Identities=33%  Similarity=0.394  Sum_probs=143.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCC-cEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNK-NICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +||+++|++|||||||+++|.+..+...+.++.+ +.+...+.+++ ..+.+++|||+|++.+..+...+++++|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999988888888887 44445555544 568999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      ||+++++++..+..|...+......  .....|+++|+||+|+.+.+.....+...+++..+++++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~--~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf  158 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKS--SETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLF  158 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccc--cCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            9999999999999999888876531  12456899999999998777777777788888888999999999999999999


Q ss_pred             HHHHHHHhcc
Q psy8700         166 AELLNLEKNR  175 (200)
Q Consensus       166 ~~i~~~~~~~  175 (200)
                      +++.+.+...
T Consensus       159 ~~l~~~l~~~  168 (215)
T cd04109         159 QQLAAELLGV  168 (215)
T ss_pred             HHHHHHHHhc
Confidence            9999988653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.7e-34  Score=205.32  Aligned_cols=171  Identities=34%  Similarity=0.549  Sum_probs=144.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +||+++|++|||||||++++..+.+.. .+.++.+..+ ...+.+++..+.+++|||||++++......++..+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999888743 5666666444 34566778889999999999999999899999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|+++++++..+..|+..+....     ....|+++|+||+|+...+.....+...+....+++|+++||++|.|++++|
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~-----~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~  155 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYA-----QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAF  155 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-----CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999888887755     2468999999999997666666667777777888999999999999999999


Q ss_pred             HHHHHHHhccchhHHHhh
Q psy8700         166 AELLNLEKNRNISLQLEK  183 (200)
Q Consensus       166 ~~i~~~~~~~~~~~~~~~  183 (200)
                      ++|.+.+.........+.
T Consensus       156 ~~l~~~~~~~~~~~~~~~  173 (191)
T cd04112         156 TAVAKELKHRKYEQPDEG  173 (191)
T ss_pred             HHHHHHHHHhccccCCCC
Confidence            999999987765443333

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=3.1e-34  Score=199.32  Aligned_cols=162  Identities=44%  Similarity=0.836  Sum_probs=143.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      ++||+++|.+|||||||++++..+.+...+.++....+......++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            57999999999999999999999888778888888777777777888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |++++.++..+..|+..+.....    ..+.|+++|+||+|+.+.......+...+++..+++++++||++|.|++++|.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~  156 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKD----TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFY  156 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHH
Confidence            99999999999999988877552    46789999999999987666666666677777889999999999999999999


Q ss_pred             HHHHHH
Q psy8700         167 ELLNLE  172 (200)
Q Consensus       167 ~i~~~~  172 (200)
                      ++.+.+
T Consensus       157 ~l~~~l  162 (164)
T cd04175         157 DLVRQI  162 (164)
T ss_pred             HHHHHh
Confidence            998765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=2.5e-34  Score=204.08  Aligned_cols=174  Identities=32%  Similarity=0.494  Sum_probs=142.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      ||+++|++|||||||++++..+.+...+.|+....+...+..++..+.+++|||+|++.+..++..++..++++++|||+
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv   81 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV   81 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence            89999999999999999999999888888888766666666777789999999999999999999999999999999999


Q ss_pred             CChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc------------cCHHHHHHHHHHhC-CcEEEec
Q psy8700          89 TSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENRE------------VSAAEGEAEAKMWG-CHFMETS  154 (200)
Q Consensus        89 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~-~~~~~vS  154 (200)
                      +++++++.+.. |+..+....      +..|+++|+||+|+.+...            ....+...++...+ ++|+++|
T Consensus        82 ~~~~sf~~~~~~~~~~i~~~~------~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  155 (189)
T cd04134          82 DSPDSLENVESKWLGEIREHC------PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECS  155 (189)
T ss_pred             CCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence            99999999874 655555432      5689999999999976432            23344555666666 6899999


Q ss_pred             ccCCCcHHHHHHHHHHHHhccchhHHHhhhcccccccccCCccccC
Q psy8700         155 AKTNHNVKELFAELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM  200 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  200 (200)
                      |++|.|++++|+++.+.+.            ..+...+..++|+||
T Consensus       156 Ak~~~~v~e~f~~l~~~~~------------~~~~~~~~~~~~~~~  189 (189)
T cd04134         156 AKLNRGVNEAFTEAARVAL------------NVRPPHPHSSACTIA  189 (189)
T ss_pred             CCcCCCHHHHHHHHHHHHh------------cccccCcCCCcceeC
Confidence            9999999999999998764            223356667788876

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.9e-34  Score=202.37  Aligned_cols=160  Identities=26%  Similarity=0.409  Sum_probs=141.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      .+||+++|++|||||||++++..+.+...+.|+....+...+.+++..+.+++|||+|++.+..+...+++++|++++||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            37999999999999999999999999888999987766667778888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc------------ccccCHHHHHHHHHHhCC-cEEE
Q psy8700          87 SCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETE------------NREVSAAEGEAEAKMWGC-HFME  152 (200)
Q Consensus        87 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~  152 (200)
                      |+++++++..+ ..|...+....      +..|+++|+||.|+.+            ...+...++..+++..++ +|++
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~------~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E  154 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFC------PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLE  154 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHC------CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEE
Confidence            99999999996 67877776644      5689999999999964            234677788999999997 8999


Q ss_pred             ecccCCCc-HHHHHHHHHHHH
Q psy8700         153 TSAKTNHN-VKELFAELLNLE  172 (200)
Q Consensus       153 vSa~~~~~-i~~~~~~i~~~~  172 (200)
                      +||++|.| |+++|..+.+..
T Consensus       155 ~SA~~~~~~v~~~F~~~~~~~  175 (178)
T cd04131         155 CSAFTSEKSVRDIFHVATMAC  175 (178)
T ss_pred             CccCcCCcCHHHHHHHHHHHH
Confidence            99999995 999999999854

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=5.7e-34  Score=198.36  Aligned_cols=162  Identities=30%  Similarity=0.405  Sum_probs=142.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++++++++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999988877777776444 34566788889999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|++++++++.+..|+..+....     .+..|+++|+||+|+.+.......+...+++..+++++++||++|.|+.++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f  156 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLT-----NPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAF  156 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-----CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            99999999999999998876654     3568999999999998877777777888888888999999999999999999


Q ss_pred             HHHHHHHh
Q psy8700         166 AELLNLEK  173 (200)
Q Consensus       166 ~~i~~~~~  173 (200)
                      .++.+.+.
T Consensus       157 ~~l~~~~~  164 (166)
T cd04122         157 LETAKKIY  164 (166)
T ss_pred             HHHHHHHh
Confidence            99988764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0079|consensus

Probab=100.00  E-value=2.2e-35  Score=191.30  Aligned_cols=165  Identities=35%  Similarity=0.538  Sum_probs=152.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ++.++.+++|++|+|||+|+.++..+.++..|..+++..+. .++.+++..+++++|||+|+++++.+...+++..++++
T Consensus         6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~   85 (198)
T KOG0079|consen    6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI   85 (198)
T ss_pred             HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence            34578899999999999999999999999999999996664 68888999999999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|+++.++|.+...|++.+....      +..|-++|+||.|.++.+.+...++..++...|+.+|++|++.+.|+..
T Consensus        86 vVYDVTn~ESF~Nv~rWLeei~~nc------dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~  159 (198)
T KOG0079|consen   86 VVYDVTNGESFNNVKRWLEEIRNNC------DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEA  159 (198)
T ss_pred             EEEECcchhhhHhHHHHHHHHHhcC------ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchH
Confidence            9999999999999999999998866      5789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy8700         164 LFAELLNLEKNR  175 (200)
Q Consensus       164 ~~~~i~~~~~~~  175 (200)
                      +|..|.+.....
T Consensus       160 mF~cit~qvl~~  171 (198)
T KOG0079|consen  160 MFHCITKQVLQA  171 (198)
T ss_pred             HHHHHHHHHHHH
Confidence            999998876543

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.4e-33  Score=195.97  Aligned_cols=162  Identities=48%  Similarity=0.829  Sum_probs=143.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|++|||||||++++.+..+...+.++....+......++..+.+++|||||++++..++..++..++++++|+|
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999998888778888877777777778888999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE  167 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~  167 (200)
                      +++++++..+..|+..+.+...    ..+.|+++|+||+|+.........+...+.+..+.+++++||++|.|++++|++
T Consensus        81 ~~~~~s~~~~~~~~~~i~~~~~----~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  156 (164)
T smart00173       81 ITDRQSFEEIKKFREQILRVKD----RDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYD  156 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHH
Confidence            9999999999999888877653    356899999999999776666666667777778899999999999999999999


Q ss_pred             HHHHHh
Q psy8700         168 LLNLEK  173 (200)
Q Consensus       168 i~~~~~  173 (200)
                      +.+.+.
T Consensus       157 l~~~~~  162 (164)
T smart00173      157 LVREIR  162 (164)
T ss_pred             HHHHHh
Confidence            998664

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG0080|consensus

Probab=100.00  E-value=1.5e-34  Score=189.85  Aligned_cols=169  Identities=33%  Similarity=0.453  Sum_probs=155.8

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ...+||+++|.+|+|||||+.++..+.+.+....+++..+ .+.+.+++..+++.+|||+|+++++.+.+.|++.+.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            4569999999999999999999999999888887888666 467889999999999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++.+++|..+..|+.++..+..    -+++-.++|+||+|..+.+.++..+...+++.+++-|+++||++.+|+..
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Yst----n~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~  164 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYST----NPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQC  164 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcC----CccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence            99999999999999999999998884    56777789999999988899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccch
Q psy8700         164 LFAELLNLEKNRNI  177 (200)
Q Consensus       164 ~~~~i~~~~~~~~~  177 (200)
                      +|+.+.+.+.+...
T Consensus       165 ~FeelveKIi~tp~  178 (209)
T KOG0080|consen  165 CFEELVEKIIETPS  178 (209)
T ss_pred             HHHHHHHHHhcCcc
Confidence            99999998876554

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1.8e-33  Score=195.65  Aligned_cols=162  Identities=84%  Similarity=1.267  Sum_probs=142.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|++|||||||+++++++.+...+.++.+..+......+...+.+.+|||||++++..+...++..++++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999988888888887777766777778899999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE  167 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~  167 (200)
                      +++++++..+..|+..+.+....  ..++.|+++|+||+|+.+..+....+...++...+++++++||++|.|++++|++
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~  159 (165)
T cd04140          82 VTSKQSLEELKPIYELICEIKGN--NIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE  159 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcC--CCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence            99999999999999888776531  1367899999999999776666666677777778889999999999999999999


Q ss_pred             HHHH
Q psy8700         168 LLNL  171 (200)
Q Consensus       168 i~~~  171 (200)
                      |.++
T Consensus       160 l~~~  163 (165)
T cd04140         160 LLNL  163 (165)
T ss_pred             HHhc
Confidence            9864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG0098|consensus

Probab=100.00  E-value=3.2e-34  Score=192.86  Aligned_cols=171  Identities=35%  Similarity=0.442  Sum_probs=156.8

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      ....+|++++|+.|+|||+|+.+++...+.+.+..|++-.+ ...+.+++..+++++|||+|++.++++...|++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45679999999999999999999999999888888888544 56778899999999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|||++.+++|..+..|+..+....     .++.-+++++||+||...++++..+...+++..|+.++++||+++.|+.
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~-----~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VE  157 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHS-----NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVE  157 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhc-----CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHH
Confidence            99999999999999999999998876     3778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchhH
Q psy8700         163 ELFAELLNLEKNRNISL  179 (200)
Q Consensus       163 ~~~~~i~~~~~~~~~~~  179 (200)
                      |+|..+...+....+..
T Consensus       158 EaF~nta~~Iy~~~q~g  174 (216)
T KOG0098|consen  158 EAFINTAKEIYRKIQDG  174 (216)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999888876555444

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.8e-33  Score=195.30  Aligned_cols=162  Identities=50%  Similarity=0.851  Sum_probs=141.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      ++||+++|.+|+|||||++++..+.+.+.+.++....+...+.+++..+.+++|||||++++..++..++.++|++++|+
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            47999999999999999999999988888888877666777778888889999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |+++++++.++..|+..+.+...    ..+.|+++|+||+|+.........+...+....+.+++++||++|.|+.++|+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  156 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKG----YEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFA  156 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHH
Confidence            99999999999999988887652    36789999999999976555555556666667788999999999999999999


Q ss_pred             HHHHHH
Q psy8700         167 ELLNLE  172 (200)
Q Consensus       167 ~i~~~~  172 (200)
                      ++.+.+
T Consensus       157 ~l~~~l  162 (163)
T cd04176         157 EIVRQM  162 (163)
T ss_pred             HHHHhc
Confidence            998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.2e-33  Score=195.58  Aligned_cols=164  Identities=39%  Similarity=0.557  Sum_probs=143.3

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ..+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+++|||||++.+..+...++.++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            468999999999999999999999998888888887544 3456667777899999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|+++++++..+..|+..+....     ..+.|+++|+||+|+.+.......+...++...+++++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~  156 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHA-----SEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEA  156 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhC-----CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999888887654     356899999999999876666666677777788899999999999999999


Q ss_pred             HHHHHHHHhc
Q psy8700         165 FAELLNLEKN  174 (200)
Q Consensus       165 ~~~i~~~~~~  174 (200)
                      |+++.+.+..
T Consensus       157 ~~~i~~~~~~  166 (167)
T cd01867         157 FFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHHHh
Confidence            9999998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.6e-33  Score=197.42  Aligned_cols=159  Identities=26%  Similarity=0.482  Sum_probs=136.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|.+|+|||||++++..+.+...+.|+.+..+...+..++..+.+++|||+|++++..++..++.++|++++|||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d   81 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence            79999999999999999999999998889999987776666778888999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhC-CcEEEe
Q psy8700          88 CTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWG-CHFMET  153 (200)
Q Consensus        88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~v  153 (200)
                      ++++++++.+.. |...+....      ++.|++||+||.|+.+.            +.+...++..+++..+ +.|+++
T Consensus        82 ~~~~~s~~~~~~~w~~~i~~~~------~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~  155 (175)
T cd01874          82 VVSPSSFENVKEKWVPEITHHC------PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVEC  155 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEe
Confidence            999999999975 555554432      46899999999998653            3345556666777776 589999


Q ss_pred             cccCCCcHHHHHHHHHHHH
Q psy8700         154 SAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~  172 (200)
                      ||++|.|++++|+.++...
T Consensus       156 SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         156 SALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             cCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998743

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=3.4e-33  Score=193.49  Aligned_cols=161  Identities=39%  Similarity=0.709  Sum_probs=140.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      ++||+++|++|||||||+++++++.+...+.++.+..+.....+++..+.+.+|||+|++++..++..++.+++++++|+
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            47999999999999999999999888888888887777777777888888999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |++++.++..+..|+..+.+...    ....|+++|+||+|+.+. .....+...+....+++++++||++|.|++++|+
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~----~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  155 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKD----SDDVPMVLVGNKCDLAAR-TVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFY  155 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECcccccc-eecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999988887652    356899999999999763 3345556666677788999999999999999999


Q ss_pred             HHHHHH
Q psy8700         167 ELLNLE  172 (200)
Q Consensus       167 ~i~~~~  172 (200)
                      ++.+.+
T Consensus       156 ~l~~~~  161 (162)
T cd04138         156 TLVREI  161 (162)
T ss_pred             HHHHHh
Confidence            998753

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=2.3e-33  Score=202.83  Aligned_cols=165  Identities=28%  Similarity=0.424  Sum_probs=144.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+++|||+|++++..++..+++.+++++
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            3568999999999999999999999888777777776443 566777888899999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++++.++..+..|+..+....     ..+.|+++|+||+|+.+.......+...+....+++++++||++|.|+++
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~  164 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRDHA-----DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEK  164 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhC-----CCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999988877654     25689999999999987777777777788888889999999999999999


Q ss_pred             HHHHHHHHHhc
Q psy8700         164 LFAELLNLEKN  174 (200)
Q Consensus       164 ~~~~i~~~~~~  174 (200)
                      +|+++.+.+.+
T Consensus       165 lf~~l~~~i~~  175 (216)
T PLN03110        165 AFQTILLEIYH  175 (216)
T ss_pred             HHHHHHHHHHH
Confidence            99999988755

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=4.9e-33  Score=193.17  Aligned_cols=162  Identities=38%  Similarity=0.627  Sum_probs=141.8

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      .+||+++|++|+|||||+++++++.+...+.++....+.....+++..+.+.+|||||++++..++..++..+|++++|+
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            58999999999999999999999888777778777666666667888889999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |++++.++..+..|+..+.....    ..+.|+++++||+|+.........+...+....+++++++||++|.|++++|+
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~----~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  157 (164)
T cd04145          82 SVTDRGSFEEVDKFHTQILRVKD----RDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFH  157 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC----CCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHH
Confidence            99999999999999988877652    45689999999999977666566666777777788999999999999999999


Q ss_pred             HHHHHH
Q psy8700         167 ELLNLE  172 (200)
Q Consensus       167 ~i~~~~  172 (200)
                      ++.+.+
T Consensus       158 ~l~~~~  163 (164)
T cd04145         158 DLVRVI  163 (164)
T ss_pred             HHHHhh
Confidence            998754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=3.6e-33  Score=194.13  Aligned_cols=161  Identities=29%  Similarity=0.527  Sum_probs=139.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|||||||++++.++.+...+.++.+..+ ......++..+.+++|||+|++.+..++..++++++++++|+
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999998888888776433 345556677789999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |+++++++..+..|...+....     ....|+++|+||+|+.+.......+...+....+++++++||++|.|+.++|+
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~-----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  156 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYS-----WDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFE  156 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-----CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            9999999999999988876544     35689999999999987666666666677777888999999999999999999


Q ss_pred             HHHHHHh
Q psy8700         167 ELLNLEK  173 (200)
Q Consensus       167 ~i~~~~~  173 (200)
                      ++.+.+.
T Consensus       157 ~l~~~~~  163 (165)
T cd01865         157 RLVDIIC  163 (165)
T ss_pred             HHHHHHH
Confidence            9988653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=3.2e-33  Score=193.63  Aligned_cols=159  Identities=32%  Similarity=0.528  Sum_probs=140.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|+|||||++++..+.+.+.+.++.+..+ ...+..++..+.+++||++|++.+..+...++.++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            5899999999999999999999988877788877443 456667777889999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |+++++++..+..|+..+....     ..+.|+++|+||.|+.+.+.+...+...+++..+++|+++||++|.|++++|+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~-----~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~  155 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYA-----PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFT  155 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-----CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999988777654     24689999999999988777777788888888889999999999999999999


Q ss_pred             HHHHH
Q psy8700         167 ELLNL  171 (200)
Q Consensus       167 ~i~~~  171 (200)
                      +|.+.
T Consensus       156 ~l~~~  160 (161)
T cd04117         156 RLTEL  160 (161)
T ss_pred             HHHhh
Confidence            99864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=3.5e-33  Score=196.87  Aligned_cols=165  Identities=27%  Similarity=0.437  Sum_probs=141.5

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeC----------CcEEEEEEEeCCCCCCChhhHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCN----------KNICTLQITDTTGSHQFPAMQRL   74 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~D~~G~~~~~~~~~~   74 (200)
                      ..+||+++|++|||||||++++..+.+...+.++.+..+ ...+...          +..+.+.+|||||++++..++..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            468999999999999999999999998888888776433 2333322          45689999999999999999999


Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS  154 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  154 (200)
                      +++++|++++|+|+++++++..+..|+..+.....    .++.|+++|+||+|+.+.......+...+++..+++++++|
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  158 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY----CENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETS  158 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEe
Confidence            99999999999999999999999999888776542    35689999999999987777777778888888899999999


Q ss_pred             ccCCCcHHHHHHHHHHHHhc
Q psy8700         155 AKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~~~  174 (200)
                      |++|.|++++|+++.+.+.+
T Consensus       159 ak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         159 AATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999987643

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=6.5e-33  Score=193.03  Aligned_cols=162  Identities=34%  Similarity=0.531  Sum_probs=141.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+++||+||++.+..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999999888777777776443 34566677788999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|+++++++..+..|+..+....     .+..|+++++||+|+.........+...++...+++++++||++|.|++++|
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~-----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~  156 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYA-----SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAF  156 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhC-----CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHH
Confidence            99999999999999988887654     2568999999999998777677777788888889999999999999999999


Q ss_pred             HHHHHHHh
Q psy8700         166 AELLNLEK  173 (200)
Q Consensus       166 ~~i~~~~~  173 (200)
                      +.|.+.+.
T Consensus       157 ~~i~~~~~  164 (166)
T cd01869         157 MTMAREIK  164 (166)
T ss_pred             HHHHHHHH
Confidence            99998764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=6.3e-33  Score=193.22  Aligned_cols=166  Identities=30%  Similarity=0.482  Sum_probs=142.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|||||||++++++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..++++++|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999998888888877544 446667788899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |+++++++..+..|...+.............|+++|+||+|+.+.......+...+....+++++++||++|.|+.++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999988877653211235689999999999976555566666677777788999999999999999999


Q ss_pred             HHHHHHh
Q psy8700         167 ELLNLEK  173 (200)
Q Consensus       167 ~i~~~~~  173 (200)
                      +|.+.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=1.3e-32  Score=192.67  Aligned_cols=158  Identities=30%  Similarity=0.540  Sum_probs=135.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|++|||||||+.+++.+.+...+.|+....+......++..+.+++|||+|++.+..++..++.++|++|+|||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS   81 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence            79999999999999999999999988888888877766667778888999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhCC-cEEEe
Q psy8700          88 CTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWGC-HFMET  153 (200)
Q Consensus        88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~v  153 (200)
                      +++++++..+.. |...+....      ++.|++||+||.|+.+..            .+...+...+++..+. +++++
T Consensus        82 ~~~~~sf~~~~~~~~~~~~~~~------~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  155 (174)
T cd01871          82 LVSPASFENVRAKWYPEVRHHC------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  155 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999865 555554432      568999999999996432            3556677778888885 99999


Q ss_pred             cccCCCcHHHHHHHHHHH
Q psy8700         154 SAKTNHNVKELFAELLNL  171 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~  171 (200)
                      ||++|.|++++|+.+.+.
T Consensus       156 Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         156 SALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             cccccCCHHHHHHHHHHh
Confidence            999999999999998763

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=1.3e-32  Score=196.09  Aligned_cols=188  Identities=32%  Similarity=0.493  Sum_probs=142.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCCh--------hhHhhcccc
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFP--------AMQRLSISK   78 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~~   78 (200)
                      +||+++|.+|||||||++++.++.+...+.|+.. ..+...+..++..+.+++|||||...+.        ......+..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999988877888876 3344556678888999999999965432        123345789


Q ss_pred             CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-HHhCCcEEEecccC
Q psy8700          79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-KMWGCHFMETSAKT  157 (200)
Q Consensus        79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~vSa~~  157 (200)
                      +|++++|||++++++++.+..|+..+.+....  .....|++||+||+|+...+.....+...+. +..+++|+++||++
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~--~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~  158 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPA--GNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKY  158 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhccc--CCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCC
Confidence            99999999999999999999998888776410  1356899999999999766555555555543 35688999999999


Q ss_pred             CCcHHHHHHHHHHHHhccchhHHHhhhcccccccccCCccccC
Q psy8700         158 NHNVKELFAELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM  200 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  200 (200)
                      |.|++++|+.+...+..+.........   .+..-..+.|++|
T Consensus       159 g~~v~~lf~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  198 (198)
T cd04142         159 NWHILLLFKELLISATTRGRSTHPALR---LQGALHRERCSIM  198 (198)
T ss_pred             CCCHHHHHHHHHHHhhccCCCccHHHH---HHHHHhhcCcccC
Confidence            999999999999988766654332222   1112234568775

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.8e-32  Score=190.03  Aligned_cols=160  Identities=40%  Similarity=0.653  Sum_probs=147.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      ||+++|++|||||||+++|.++.+...+.++.+ +.....+..++..+.+++||++|++.+..+...++.++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            799999999999999999999999888998884 5556777888999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE  167 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~  167 (200)
                      +++++++..+..|...+.....     ...|++|++||.|+.+.+++...+...+++..+.+|+++||+++.|+.++|..
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~-----~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~  155 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKP-----EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQE  155 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHST-----TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHH
T ss_pred             cccccccccccccccccccccc-----ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHH
Confidence            9999999999999999888873     46899999999999888888888899999999999999999999999999999


Q ss_pred             HHHHHh
Q psy8700         168 LLNLEK  173 (200)
Q Consensus       168 i~~~~~  173 (200)
                      +++.+.
T Consensus       156 ~i~~i~  161 (162)
T PF00071_consen  156 LIRKIL  161 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=3.2e-32  Score=194.00  Aligned_cols=163  Identities=31%  Similarity=0.416  Sum_probs=136.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +||+++|++|+|||||++++..+.+.. .+.++.+..+ ...+..++..+.+.+||++|++++..+...++.++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988764 5777776544 34667788889999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc----cccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN----REVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      ||++++.++..+..|+..+....      +..|+++|+||+|+...    ......+...+....+++++++||++|.|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~------~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv  154 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE------EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNV  154 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC------CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence            99999999999888887776543      46899999999998643    233344556666777889999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q psy8700         162 KELFAELLNLEKNRN  176 (200)
Q Consensus       162 ~~~~~~i~~~~~~~~  176 (200)
                      +++|+++.+.+..+.
T Consensus       155 ~~l~~~i~~~~~~~~  169 (193)
T cd04118         155 DELFQKVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999886543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>KOG0087|consensus

Probab=100.00  E-value=6.6e-33  Score=190.36  Aligned_cols=170  Identities=29%  Similarity=0.413  Sum_probs=156.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +-.+||+++|++|+|||-|+.|+..+.+.....+|++..+ ...+.++++.++.+||||+|+++|+.+...|++.+.+++
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl   91 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   91 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence            4469999999999999999999999999999999999554 557888999999999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|||++.+.+|+++..|+..+....+     +++++++|+||+||.+.+.+...+.+.++...+..++++||+++.|+.+
T Consensus        92 lVYDITr~~Tfenv~rWL~ELRdhad-----~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~  166 (222)
T KOG0087|consen   92 LVYDITRRQTFENVERWLKELRDHAD-----SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEK  166 (222)
T ss_pred             EEEechhHHHHHHHHHHHHHHHhcCC-----CCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHH
Confidence            99999999999999999999999884     7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchhH
Q psy8700         164 LFAELLNLEKNRNISL  179 (200)
Q Consensus       164 ~~~~i~~~~~~~~~~~  179 (200)
                      +|+.++..+.......
T Consensus       167 aF~~~l~~I~~~vs~k  182 (222)
T KOG0087|consen  167 AFERVLTEIYKIVSKK  182 (222)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999988876555444

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2.6e-32  Score=197.53  Aligned_cols=164  Identities=25%  Similarity=0.363  Sum_probs=139.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      +...+||+++|++|||||||+++++.+.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..++.+++++
T Consensus        10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   89 (219)
T PLN03071         10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (219)
T ss_pred             CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence            46789999999999999999999999998888888887443 44555667778999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|||++++.++..+..|+..+....      ++.|+++|+||+|+.+.. ...... .+.+..+++|+++||++|.|+.
T Consensus        90 ilvfD~~~~~s~~~i~~w~~~i~~~~------~~~piilvgNK~Dl~~~~-v~~~~~-~~~~~~~~~~~e~SAk~~~~i~  161 (219)
T PLN03071         90 IIMFDVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKNRQ-VKAKQV-TFHRKKNLQYYEISAKSNYNFE  161 (219)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC------CCCcEEEEEEchhhhhcc-CCHHHH-HHHHhcCCEEEEcCCCCCCCHH
Confidence            99999999999999999988887643      568999999999986432 233333 5566678899999999999999


Q ss_pred             HHHHHHHHHHhcc
Q psy8700         163 ELFAELLNLEKNR  175 (200)
Q Consensus       163 ~~~~~i~~~~~~~  175 (200)
                      ++|+++.+.+.+.
T Consensus       162 ~~f~~l~~~~~~~  174 (219)
T PLN03071        162 KPFLYLARKLAGD  174 (219)
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999988644

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=5.3e-32  Score=188.80  Aligned_cols=162  Identities=46%  Similarity=0.789  Sum_probs=142.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      ++||+++|++|||||||++++.++.+...+.++.+..+......++..+.+++|||||++++..++..++..++++++|+
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            47999999999999999999999888777888887666666777888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC-CcEEEecccCCCcHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKELF  165 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~~~  165 (200)
                      |+++++++.....|...+.+...    ..+.|+++++||.|+.........+...+.+.++ ++++++||+++.|+.++|
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~----~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f  156 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKD----SDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF  156 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC----CCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHH
Confidence            99999999999998888877552    4678999999999997766666666666667777 699999999999999999


Q ss_pred             HHHHHHH
Q psy8700         166 AELLNLE  172 (200)
Q Consensus       166 ~~i~~~~  172 (200)
                      +++...+
T Consensus       157 ~~i~~~~  163 (168)
T cd04177         157 IDLVRQI  163 (168)
T ss_pred             HHHHHHH
Confidence            9998755

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=3.8e-32  Score=188.98  Aligned_cols=161  Identities=33%  Similarity=0.464  Sum_probs=139.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||+..+..+...++.+++++++|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            58999999999999999999999888777777776433 45666777778999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|++++.++..+..|+..+.....     ...|+++|+||.|+...+.....+...+....+++++++||++|.|+.++|
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  157 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHAD-----SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAF  157 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCC-----CCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            999999999999999888777652     458999999999998766666667777777778899999999999999999


Q ss_pred             HHHHHHH
Q psy8700         166 AELLNLE  172 (200)
Q Consensus       166 ~~i~~~~  172 (200)
                      +++.+.+
T Consensus       158 ~~l~~~i  164 (165)
T cd01868         158 KQLLTEI  164 (165)
T ss_pred             HHHHHHh
Confidence            9998764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=4e-32  Score=189.57  Aligned_cols=162  Identities=27%  Similarity=0.348  Sum_probs=137.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      ||+++|++|||||||+++++.+.+...|.|+.+..+ ...+..++..+.+++|||||++.+..+...+++++|++++|+|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            899999999999999999999999888989887554 3556677888999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc--CHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV--SAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +++++++..+..|+..+.....    ....|+++|+||+|+.+..+.  ...+...+....+.+++++||++|.|+.++|
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~----~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf  157 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKEND----PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFF  157 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcC----CCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            9999999999998888766542    345789999999998654332  3444556666778899999999999999999


Q ss_pred             HHHHHHHhc
Q psy8700         166 AELLNLEKN  174 (200)
Q Consensus       166 ~~i~~~~~~  174 (200)
                      +.+.+.+.+
T Consensus       158 ~~l~~~~~~  166 (170)
T cd04108         158 FRVAALTFE  166 (170)
T ss_pred             HHHHHHHHH
Confidence            999987743

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=4.1e-32  Score=191.32  Aligned_cols=163  Identities=25%  Similarity=0.407  Sum_probs=136.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|+.|||||||++++..+.+...+.|+.+..+ ...+..++..+.+++|||+|++.+..++..++.++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999999888899887444 456777888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc-----cccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN-----REVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      |++++.++..+..|+..+....     ....| ++|+||+|+...     ......+...+++..+++++++||++|.|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~-----~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v  154 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFN-----KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINV  154 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-----CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            9999999999999988777654     23456 678999998531     111223455667777889999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q psy8700         162 KELFAELLNLEKNRN  176 (200)
Q Consensus       162 ~~~~~~i~~~~~~~~  176 (200)
                      +++|+++.+.+.+-.
T Consensus       155 ~~lf~~l~~~l~~~~  169 (182)
T cd04128         155 QKIFKIVLAKAFDLP  169 (182)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999998876533

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=2.8e-32  Score=189.01  Aligned_cols=158  Identities=35%  Similarity=0.489  Sum_probs=136.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeC--CcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCN--KNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+...  +..+.+++|||||++.+..++..++++++++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999999888777777776444 3444455  677899999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|+++++++..+..|...+....      .+.|+++|+||+|+..+......+...+.+..+++++++||++|.|++++
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  154 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC------GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTEL  154 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC------CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            999999999999999888776533      56899999999999877766667777788888999999999999999999


Q ss_pred             HHHHHHH
Q psy8700         165 FAELLNL  171 (200)
Q Consensus       165 ~~~i~~~  171 (200)
                      |++|...
T Consensus       155 ~~~l~~~  161 (162)
T cd04106         155 FEYLAEK  161 (162)
T ss_pred             HHHHHHh
Confidence            9998753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=4.6e-32  Score=195.27  Aligned_cols=166  Identities=34%  Similarity=0.475  Sum_probs=142.5

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccc-ceeEEEEe-CCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISC-NKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      .+||+++|++|||||||++++.+..+...+.++.+. .+...+.. ++..+.+++|||+|++.+..+...++.++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            489999999999999999999998887777777653 33344444 4667899999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |||++++.++..+..|+..+.....    ....|++||+||.|+.+.......+...+++..+++++++||++|.|+.++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~----~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~  157 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQ----PHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEA  157 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC----CCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999988876652    345788999999999887777777778888888899999999999999999


Q ss_pred             HHHHHHHHhccc
Q psy8700         165 FAELLNLEKNRN  176 (200)
Q Consensus       165 ~~~i~~~~~~~~  176 (200)
                      |++|.+.+.++.
T Consensus       158 f~~l~~~~~~~~  169 (211)
T cd04111         158 FELLTQEIYERI  169 (211)
T ss_pred             HHHHHHHHHHHh
Confidence            999999876553

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=4.4e-32  Score=187.90  Aligned_cols=159  Identities=34%  Similarity=0.478  Sum_probs=138.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+++||+||++.+......++.++|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999999888777666665333 345566777789999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |++++.++..+..|+..+....     .++.|+++++||+|+.........+...+....+++++++||+++.|+.++|+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~-----~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  155 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALA-----SPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFL  155 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-----CCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            9999999999999988776554     36789999999999987777777778888888889999999999999999999


Q ss_pred             HHHHH
Q psy8700         167 ELLNL  171 (200)
Q Consensus       167 ~i~~~  171 (200)
                      ++.+.
T Consensus       156 ~~~~~  160 (161)
T cd04113         156 KCARS  160 (161)
T ss_pred             HHHHh
Confidence            99874

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=5.9e-32  Score=188.13  Aligned_cols=159  Identities=25%  Similarity=0.395  Sum_probs=134.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|||||||+++++.+.+...+.++.+..+ ......++..+.+.+|||+|++.+..+...++..+|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999998888777888776433 345555777799999999999999988899999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |+++++++..+..|...+....      .+.|+++|+||+|+.+.. .. .....+....+++++++||++|.|+.++|+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~------~~~piiiv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~  152 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVC------GNIPIVLCGNKVDIKDRK-VK-AKQITFHRKKNLQYYEISAKSNYNFEKPFL  152 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC------CCCcEEEEEEchhccccc-CC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHH
Confidence            9999999999999988887765      369999999999997433 22 233445566678999999999999999999


Q ss_pred             HHHHHHhc
Q psy8700         167 ELLNLEKN  174 (200)
Q Consensus       167 ~i~~~~~~  174 (200)
                      ++.+.+.+
T Consensus       153 ~l~~~~~~  160 (166)
T cd00877         153 WLARKLLG  160 (166)
T ss_pred             HHHHHHHh
Confidence            99987753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=9.3e-32  Score=187.57  Aligned_cols=163  Identities=37%  Similarity=0.502  Sum_probs=140.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++....+.+||+||++.+..+...+++++|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999887776666655333 34556677778999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|++++.++..+..|+..+....     .+..|+++|+||+|+.+.......+...+....+++++++||+.+.|++++|
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~  158 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHS-----NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAF  158 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-----CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999998887764     3668999999999998766666667777777888999999999999999999


Q ss_pred             HHHHHHHhc
Q psy8700         166 AELLNLEKN  174 (200)
Q Consensus       166 ~~i~~~~~~  174 (200)
                      +++.+.+.+
T Consensus       159 ~~~~~~~~~  167 (168)
T cd01866         159 INTAKEIYE  167 (168)
T ss_pred             HHHHHHHHh
Confidence            999987643

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>KOG0093|consensus

Probab=100.00  E-value=1.1e-32  Score=178.62  Aligned_cols=162  Identities=28%  Similarity=0.512  Sum_probs=149.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+|++++|...+|||||+.++.++.+...+.++.+-.++ +++.-..+.+++++|||+|+++|+.+...+++.++++|++
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm  100 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM  100 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence            479999999999999999999999999999999885553 5666566779999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|+++.+++..++.|...+.....     .+.|+++|+||+|+.+++.++......++...|..||++||+.+.|++.+|
T Consensus       101 yDitNeeSf~svqdw~tqIktysw-----~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~F  175 (193)
T KOG0093|consen  101 YDITNEESFNSVQDWITQIKTYSW-----DNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVF  175 (193)
T ss_pred             EecCCHHHHHHHHHHHHHheeeec-----cCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence            999999999999999999988774     678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q psy8700         166 AELLNLEK  173 (200)
Q Consensus       166 ~~i~~~~~  173 (200)
                      +.+...+-
T Consensus       176 e~lv~~Ic  183 (193)
T KOG0093|consen  176 ERLVDIIC  183 (193)
T ss_pred             HHHHHHHH
Confidence            99998763

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1e-31  Score=186.15  Aligned_cols=159  Identities=26%  Similarity=0.390  Sum_probs=132.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|||||||++++..+.+.+.+.++.. ..+.....+++..+.+.+|||+|++.+..++..+++++|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999888777666654 333445666778899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |++++.++..+..|+..+....      ++.|+++|+||+|+....   ..+...+....+++++++||++|.|++++|+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~------~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  151 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR------PEIPCIVVANKIDLDPSV---TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQ  151 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC------CCCcEEEEEECccCchhH---HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999998888886543      568999999999984321   2233445555678999999999999999999


Q ss_pred             HHHHHHhcc
Q psy8700         167 ELLNLEKNR  175 (200)
Q Consensus       167 ~i~~~~~~~  175 (200)
                      .+.+.+.++
T Consensus       152 ~l~~~~~~~  160 (161)
T cd04124         152 DAIKLAVSY  160 (161)
T ss_pred             HHHHHHHhc
Confidence            999877654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=7.9e-32  Score=187.41  Aligned_cols=161  Identities=30%  Similarity=0.439  Sum_probs=137.9

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ..+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+++|||||++.+......++.++|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999888777776665333 3456667777899999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKE  163 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~  163 (200)
                      |+|++++.++..+..|+..+....     ..+.|+++|+||+|+.+.++........+++..+. .++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  156 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYG-----ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEE  156 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhC-----CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHH
Confidence            999999999999999988887654     35689999999999987776666677777777776 789999999999999


Q ss_pred             HHHHHHHH
Q psy8700         164 LFAELLNL  171 (200)
Q Consensus       164 ~~~~i~~~  171 (200)
                      +|+++.+.
T Consensus       157 ~~~~l~~~  164 (165)
T cd01864         157 AFLLMATE  164 (165)
T ss_pred             HHHHHHHh
Confidence            99999864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=6.9e-32  Score=189.24  Aligned_cols=158  Identities=30%  Similarity=0.551  Sum_probs=135.3

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCT   89 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   89 (200)
                      |+++|++|||||||++++..+.+...+.++....+...+..++..+.+++|||||++.+..++..++..+|++++|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            58999999999999999999998888888877776666777888899999999999999999999999999999999999


Q ss_pred             ChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhCC-cEEEecc
Q psy8700          90 SRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWGC-HFMETSA  155 (200)
Q Consensus        90 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~vSa  155 (200)
                      ++++++.+.. |+..+....      ++.|+++|+||+|+....            .+...+...+++..+. +++++||
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  154 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFC------PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSA  154 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhC------CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecC
Confidence            9999999865 665555433      568999999999986532            2455666778888886 9999999


Q ss_pred             cCCCcHHHHHHHHHHHHh
Q psy8700         156 KTNHNVKELFAELLNLEK  173 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~~~  173 (200)
                      ++|.|++++|+.+.+.+.
T Consensus       155 ~~~~~v~~lf~~l~~~~~  172 (174)
T smart00174      155 LTQEGVREVFEEAIRAAL  172 (174)
T ss_pred             CCCCCHHHHHHHHHHHhc
Confidence            999999999999998763

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=2.6e-31  Score=184.45  Aligned_cols=162  Identities=39%  Similarity=0.653  Sum_probs=142.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|++|||||||++++....+...+.++....+......++..+.+.+||+||+..+......+++.++++++++|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999998888788888777777777778888999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE  167 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~  167 (200)
                      ++++.++.....|+..+.....    ..+.|+++|+||+|+.+.......+...+...++++++++||++|.|+.++|++
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~----~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  156 (164)
T cd04139          81 ITDMESFTATAEFREQILRVKD----DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYD  156 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHH
Confidence            9999999999999988888753    456999999999999775445555666677778899999999999999999999


Q ss_pred             HHHHHh
Q psy8700         168 LLNLEK  173 (200)
Q Consensus       168 i~~~~~  173 (200)
                      +.+.+.
T Consensus       157 l~~~~~  162 (164)
T cd04139         157 LVREIR  162 (164)
T ss_pred             HHHHHH
Confidence            998764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.6e-31  Score=186.70  Aligned_cols=162  Identities=29%  Similarity=0.417  Sum_probs=139.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCCh-hhHhhccccCCEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFP-AMQRLSISKGHAFIL   84 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~~i~   84 (200)
                      .+||+++|++|||||||++++..+.+...+.++.+.. ....+..++..+.+.+||++|++++. .+...+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999988877777776533 34566678888999999999998876 578889999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC---CCcH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT---NHNV  161 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~---~~~i  161 (200)
                      |+|++++.++..+..|...+.....    ..+.|+++|+||+|+.+.++....+...++...+++|+++||++   +.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i  157 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSL----PNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHV  157 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcC----CCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCH
Confidence            9999999999999999988877652    36789999999999988777777777788888889999999999   8899


Q ss_pred             HHHHHHHHHHH
Q psy8700         162 KELFAELLNLE  172 (200)
Q Consensus       162 ~~~~~~i~~~~  172 (200)
                      .++|..+.+.+
T Consensus       158 ~~~f~~l~~~~  168 (170)
T cd04115         158 EAIFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>KOG0088|consensus

Probab=100.00  E-value=4.9e-33  Score=182.46  Aligned_cols=168  Identities=33%  Similarity=0.501  Sum_probs=152.9

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      +.-.+||+++|..-+|||||+-|++.++|.....++.. .+....+.+++....+.+|||+|+++|..+.+.|++..+++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            34469999999999999999999999999777777776 33356677788889999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|||++|+++|+.+..|...+....+     ..+..+||+||+|+.+++.+..+++..++..-|..|+++||+++.||.
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlG-----nei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~  164 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLG-----NEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGIS  164 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhC-----CeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHH
Confidence            999999999999999999999998885     778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q psy8700         163 ELFAELLNLEKNRN  176 (200)
Q Consensus       163 ~~~~~i~~~~~~~~  176 (200)
                      ++|+.+...+.++.
T Consensus       165 elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  165 ELFESLTAKMIEHS  178 (218)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998886655

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2.1e-31  Score=186.11  Aligned_cols=166  Identities=30%  Similarity=0.429  Sum_probs=139.5

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      ++..+||+++|++|||||||++++..+.+.+.+.++.+..+ ...+..++..+.+++||+||++++..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            46779999999999999999999999888777777766433 45666788889999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNV  161 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i  161 (200)
                      ++|||+++++++..+..|...+...... ......|+++|+||.|+. .......+...++...+. +++++||++|.|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  159 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADV-KEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNV  159 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhccc-ccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCH
Confidence            9999999999999999988877665421 113568999999999986 444556667777777774 8999999999999


Q ss_pred             HHHHHHHHHH
Q psy8700         162 KELFAELLNL  171 (200)
Q Consensus       162 ~~~~~~i~~~  171 (200)
                      .++|+++.+.
T Consensus       160 ~~~~~~~~~~  169 (170)
T cd04116         160 AAAFEEAVRR  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=1.6e-31  Score=185.86  Aligned_cols=162  Identities=39%  Similarity=0.602  Sum_probs=136.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC-ChhhHhhccccCCEEEEEee
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ-FPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~~i~v~d   87 (200)
                      ||+++|++|||||||+++++.+.+...+.++....+......++..+.+++||+||+.. .......++.++|++++|+|
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            68999999999999999999888777777877666666667788888999999999885 34456678899999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC-cHHHHHH
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFA  166 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~-~i~~~~~  166 (200)
                      ++++.+++.+..|+..+.....   ...+.|+++|+||+|+.....+...+...+++..+++|+++||++|. |++++|+
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~  157 (165)
T cd04146          81 ITDRSSFDEISQLKQLIREIKK---RDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFH  157 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHH
Confidence            9999999999999888877552   13568999999999987766666677777888888999999999995 9999999


Q ss_pred             HHHHHHh
Q psy8700         167 ELLNLEK  173 (200)
Q Consensus       167 ~i~~~~~  173 (200)
                      .+.+.+.
T Consensus       158 ~l~~~~~  164 (165)
T cd04146         158 ELCREVR  164 (165)
T ss_pred             HHHHHHh
Confidence            9998664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=3.3e-31  Score=190.83  Aligned_cols=165  Identities=35%  Similarity=0.496  Sum_probs=143.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ..+||+++|++|||||||++++....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..++..+|++++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999888777777766443 4456677878899999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|+++++++..+..|+..+....     .+..|+++++||+|+.+.......+...+++..+++++++||+++.|++++
T Consensus        85 v~D~~~~~s~~~l~~~~~~~~~~~-----~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~  159 (210)
T PLN03108         85 VYDITRRETFNHLASWLEDARQHA-----NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA  159 (210)
T ss_pred             EEECCcHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999988887776554     356899999999999887777777788888888999999999999999999


Q ss_pred             HHHHHHHHhcc
Q psy8700         165 FAELLNLEKNR  175 (200)
Q Consensus       165 ~~~i~~~~~~~  175 (200)
                      |+++.+.+...
T Consensus       160 f~~l~~~~~~~  170 (210)
T PLN03108        160 FIKTAAKIYKK  170 (210)
T ss_pred             HHHHHHHHHHH
Confidence            99999877543

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=2.3e-31  Score=195.17  Aligned_cols=165  Identities=45%  Similarity=0.697  Sum_probs=140.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|++|||||||+++++.+.+...+.++..+.....+.+++..+.+.+|||+|++.+..+...++..+|++++|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999999888888888887777777888888999999999999988888888999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCC----CCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-hCCcEEEecccCCCcHH
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGG----ANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-WGCHFMETSAKTNHNVK  162 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~~i~  162 (200)
                      ++++++++.+..|+..+......    .....+.|++||+||+|+....++...+...+... .++.++++||++|.|++
T Consensus        81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~  160 (247)
T cd04143          81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLD  160 (247)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHH
Confidence            99999999999999888765321    01235789999999999976555555555555443 35789999999999999


Q ss_pred             HHHHHHHHHH
Q psy8700         163 ELFAELLNLE  172 (200)
Q Consensus       163 ~~~~~i~~~~  172 (200)
                      ++|++|.+.+
T Consensus       161 elf~~L~~~~  170 (247)
T cd04143         161 EMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHh
Confidence            9999999866

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=2.3e-31  Score=184.68  Aligned_cols=162  Identities=40%  Similarity=0.571  Sum_probs=139.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+......++..+|++++|+
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            6899999999999999999999888777777766444 345566777789999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |++++.++..+..|+..+.....     +..|+++++||+|+.+..+........+....+++++++|+++|.|+.++|+
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~-----~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~  155 (164)
T smart00175       81 DITNRESFENLKNWLKELREYAD-----PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFE  155 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-----CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999988887776652     5799999999999877666666667777777889999999999999999999


Q ss_pred             HHHHHHhc
Q psy8700         167 ELLNLEKN  174 (200)
Q Consensus       167 ~i~~~~~~  174 (200)
                      +|.+.+.+
T Consensus       156 ~i~~~~~~  163 (164)
T smart00175      156 ELAREILK  163 (164)
T ss_pred             HHHHHHhh
Confidence            99987754

Rab GTPases are implicated in vesicle trafficking.

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=2.4e-31  Score=184.19  Aligned_cols=159  Identities=35%  Similarity=0.552  Sum_probs=137.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|||||||++++.+..+...+.++.+.. ....+..++..+.+++|||||+..+...+..+++.++++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999988877766766633 3455566777789999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |+++++++..+..|+..+.....     .+.|+++++||+|+.+.......+...+....+++++++||+++.|++++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~-----~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  155 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERG-----NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFR  155 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999888766542     4689999999999976666666677777778889999999999999999999


Q ss_pred             HHHHH
Q psy8700         167 ELLNL  171 (200)
Q Consensus       167 ~i~~~  171 (200)
                      ++.+.
T Consensus       156 ~i~~~  160 (161)
T cd01861         156 KIASA  160 (161)
T ss_pred             HHHHh
Confidence            99874

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=2.3e-31  Score=186.43  Aligned_cols=157  Identities=29%  Similarity=0.521  Sum_probs=134.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +|++++|++|+|||||++++..+.+...+.++..+.+.....+++..+.+++|||||++.+..++..+++++|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            68999999999999999999998888888888776666677778888999999999999999999999999999999999


Q ss_pred             CCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc------------ccccCHHHHHHHHHHhCC-cEEEe
Q psy8700          88 CTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETE------------NREVSAAEGEAEAKMWGC-HFMET  153 (200)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~v  153 (200)
                      ++++++++.+. .|+..+....      ++.|+++++||.|+..            .+.+...+...+++..+. +++++
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~  154 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHN------PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIEC  154 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhC------CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEE
Confidence            99999999985 4655555422      4689999999999864            234556677788888887 99999


Q ss_pred             cccCCCcHHHHHHHHHH
Q psy8700         154 SAKTNHNVKELFAELLN  170 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~  170 (200)
                      ||++|.|++++|+.++.
T Consensus       155 Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         155 SALTQKNLKEVFDTAIL  171 (173)
T ss_pred             eCCCCCCHHHHHHHHHh
Confidence            99999999999998864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=7.9e-31  Score=189.20  Aligned_cols=168  Identities=33%  Similarity=0.499  Sum_probs=138.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ...+||+++|++|||||||+++|.+..+. .+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++++|+++
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            34689999999999999999999987763 4555555333 345566777789999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|+++++++..+..+|........   .....|+++|+||+|+.........+...+....+++|+++||+++.|+++
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~---~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  167 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYS---TNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ  167 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999876655444331   134579999999999987666666677777778889999999999999999


Q ss_pred             HHHHHHHHHhccc
Q psy8700         164 LFAELLNLEKNRN  176 (200)
Q Consensus       164 ~~~~i~~~~~~~~  176 (200)
                      +|++|.+.+.+..
T Consensus       168 l~~~l~~~~~~~~  180 (211)
T PLN03118        168 CFEELALKIMEVP  180 (211)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999886654

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=100.00  E-value=5.1e-31  Score=185.84  Aligned_cols=179  Identities=40%  Similarity=0.644  Sum_probs=147.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      .||+++|++|+|||||++++....+...+.++....+......++..+.+++||+||+.++..+...++..++++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            68999999999999999999998887777787776656666667777889999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE  167 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~  167 (200)
                      .++..++..+..++..+.+...    ..+.|+++++||+|+.........+...+....+.+++++||+++.|+.++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  157 (180)
T cd04137          82 VTSRKSFEVVKVIYDKILDMLG----KESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFEL  157 (180)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999988887652    356899999999999765555555556666777889999999999999999999


Q ss_pred             HHHHHhccchhHHHhhhcccccccccCCccccC
Q psy8700         168 LLNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM  200 (200)
Q Consensus       168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  200 (200)
                      +.+.+.....          ......+++|++|
T Consensus       158 l~~~~~~~~~----------~~~~~~~~~~~~~  180 (180)
T cd04137         158 LIEEIEKVEN----------PLDPGQKKKCSIM  180 (180)
T ss_pred             HHHHHHHhcC----------CCCCCCCCCceeC
Confidence            9987743321          2223345678875

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG0095|consensus

Probab=100.00  E-value=2.7e-32  Score=177.38  Aligned_cols=163  Identities=33%  Similarity=0.448  Sum_probs=150.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      =.+||+++|..|+|||+|++++..+-+++....+++ ++.-+++.++++++++++|||+|+++++++...|++.++++|+
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil   85 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence            358999999999999999999999999988888888 5557899999999999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|+++..+|+-+..|+..+..+..     .+.--++|+||+|+.+.++++.....++.......|+++||++-+|++.+
T Consensus        86 vydiscqpsfdclpewlreie~yan-----~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~l  160 (213)
T KOG0095|consen   86 VYDISCQPSFDCLPEWLREIEQYAN-----NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL  160 (213)
T ss_pred             EEecccCcchhhhHHHHHHHHHHhh-----cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence            9999999999999999999999885     56677899999999999999988889998888889999999999999999


Q ss_pred             HHHHHHHHh
Q psy8700         165 FAELLNLEK  173 (200)
Q Consensus       165 ~~~i~~~~~  173 (200)
                      |..+.-.+.
T Consensus       161 f~~~a~rli  169 (213)
T KOG0095|consen  161 FLDLACRLI  169 (213)
T ss_pred             HHHHHHHHH
Confidence            998876553

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=4.4e-31  Score=182.05  Aligned_cols=154  Identities=23%  Similarity=0.368  Sum_probs=127.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|++|||||||+.++..+.+.+.+.|+ ...+...+.+++..+.+.+|||+|++.     ..+++++|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            58999999999999999999998887666554 334456677788888999999999875     246678999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc--ccccCHHHHHHHHHHh-CCcEEEecccCCCcHHHH
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE--NREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~~  164 (200)
                      ++++++++.+..|+..+.....    .+..|+++|+||.|+..  .+++...+...+++.. +++|++|||++|.||+++
T Consensus        75 ~~~~~sf~~~~~~~~~i~~~~~----~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~  150 (158)
T cd04103          75 LENEASFQTVYNLYHQLSSYRN----ISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERV  150 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHH
Confidence            9999999999999988877652    36689999999999853  4566666777777665 489999999999999999


Q ss_pred             HHHHHHH
Q psy8700         165 FAELLNL  171 (200)
Q Consensus       165 ~~~i~~~  171 (200)
                      |+.+.+.
T Consensus       151 f~~~~~~  157 (158)
T cd04103         151 FQEAAQK  157 (158)
T ss_pred             HHHHHhh
Confidence            9998764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=4.7e-31  Score=187.45  Aligned_cols=157  Identities=29%  Similarity=0.434  Sum_probs=126.5

Q ss_pred             ceEEEEECCCCCCHHHHHH-HHhhCC-----CCCCcCCCcc--cceeEE--------EEeCCcEEEEEEEeCCCCCCChh
Q psy8700           7 DYRVVVFGAGGVGKSSLVL-RFVKGT-----FRESYIPTIE--DTYRQV--------ISCNKNICTLQITDTTGSHQFPA   70 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~D~~G~~~~~~   70 (200)
                      .+||+++|++|||||||+. ++.++.     +...+.|+.+  +.+...        ..+++..+.+++|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            5899999999999999995 565433     3456777774  223222        24678889999999999875  3


Q ss_pred             hHhhccccCCEEEEEeeCCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc-------------------
Q psy8700          71 MQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETE-------------------  130 (200)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------  130 (200)
                      ....+++++|++++|||++++.++..+.. |...+....      ++.|+++|+||+|+.+                   
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~------~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~  153 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC------PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKN  153 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC------CCCCEEEEEEchhccccccchhhhccccccccccc
Confidence            55678999999999999999999999974 666665433      4689999999999864                   


Q ss_pred             ccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy8700         131 NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL  171 (200)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~  171 (200)
                      .+.+...++..+++..+++|++|||++|.||+++|+.+.+.
T Consensus       154 ~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         154 ADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            35667788899999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0086|consensus

Probab=100.00  E-value=5.8e-32  Score=176.46  Aligned_cols=174  Identities=30%  Similarity=0.394  Sum_probs=156.6

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      -.+|++++|+.|.|||+|+.++....+.....++.+..+ ...+.+.++.+++++|||+|++++++..+.|++.+.+.++
T Consensus         8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL   87 (214)
T KOG0086|consen    8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL   87 (214)
T ss_pred             hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence            358999999999999999999999999888888888555 5567788899999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|++++++|..+..|+.......     .+.+-+++++||.|+.+++++...++..++++..+.++++|+++|.|+.+.
T Consensus        88 VYD~TsrdsfnaLtnWL~DaR~lA-----s~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa  162 (214)
T KOG0086|consen   88 VYDITSRDSFNALTNWLTDARTLA-----SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA  162 (214)
T ss_pred             EEeccchhhHHHHHHHHHHHHhhC-----CCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence            999999999999999999888777     577888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccchhHHHhhh
Q psy8700         165 FAELLNLEKNRNISLQLEKK  184 (200)
Q Consensus       165 ~~~i~~~~~~~~~~~~~~~~  184 (200)
                      |-...+.+..+-+..+++.+
T Consensus       163 Fl~c~~tIl~kIE~GElDPe  182 (214)
T KOG0086|consen  163 FLKCARTILNKIESGELDPE  182 (214)
T ss_pred             HHHHHHHHHHHHhhcCCCHH
Confidence            99888887766555544433

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=7.9e-31  Score=190.05  Aligned_cols=163  Identities=38%  Similarity=0.599  Sum_probs=136.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccc-cCCEEEE
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSIS-KGHAFIL   84 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~-~~~~~i~   84 (200)
                      +||+++|++|+|||||++++..+.+. ..+.++.+ +.+...+.+++..+.+.+|||+|++  ......++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999888775 56666665 5556677778888999999999988  334455666 8999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |||++++.++..+..|+..+.....    ..+.|+++|+||+|+.+..++...+...++...+++++++||+++.|++++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~----~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l  154 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQ----LEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDEL  154 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence            9999999999999999888876542    357899999999999877766666667777777889999999999999999


Q ss_pred             HHHHHHHHhccc
Q psy8700         165 FAELLNLEKNRN  176 (200)
Q Consensus       165 ~~~i~~~~~~~~  176 (200)
                      |+++.+.+..+.
T Consensus       155 ~~~l~~~~~~~~  166 (221)
T cd04148         155 LEGIVRQIRLRR  166 (221)
T ss_pred             HHHHHHHHHhhh
Confidence            999999886443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=5.4e-31  Score=182.97  Aligned_cols=159  Identities=28%  Similarity=0.382  Sum_probs=133.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC--CCCCCcCCCcc-cceeEEEEeC-CcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG--TFRESYIPTIE-DTYRQVISCN-KNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~--~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +||+++|++|||||||++++...  .+...+.++.+ +.....+..+ +..+.+.+|||||++.+..+...++.++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  56677777775 3334444443 56789999999999998899999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|+++++++..+..|...+....      ...|+++|+||+|+.+..+........+....+++++++||+++.|+.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  154 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS------KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEE  154 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC------CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHH
Confidence            9999999999999988887777643      4589999999999977766666565666677788999999999999999


Q ss_pred             HHHHHHHHH
Q psy8700         164 LFAELLNLE  172 (200)
Q Consensus       164 ~~~~i~~~~  172 (200)
                      +|+.+.+.+
T Consensus       155 l~~~l~~~~  163 (164)
T cd04101         155 PFESLARAF  163 (164)
T ss_pred             HHHHHHHHh
Confidence            999998864

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>KOG0395|consensus

Probab=100.00  E-value=4.2e-31  Score=186.76  Aligned_cols=165  Identities=50%  Similarity=0.865  Sum_probs=156.0

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      ..+||+++|.+|+|||+|+.++..+.+...|.|++++.++..+.++++.+.+.++||+|++.+..+...++.+++++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      |+++++.||+.+..++..+.+..+    ....|+++|+||+|+...+++...+...++..++++|+++||+.+.+++++|
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~----~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F  157 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKG----RDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVF  157 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC----cCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHH
Confidence            999999999999999999966664    4568999999999999989999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy8700         166 AELLNLEKN  174 (200)
Q Consensus       166 ~~i~~~~~~  174 (200)
                      ..+.+.+..
T Consensus       158 ~~L~r~~~~  166 (196)
T KOG0395|consen  158 YELVREIRL  166 (196)
T ss_pred             HHHHHHHHh
Confidence            999998865

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=8.9e-31  Score=183.59  Aligned_cols=159  Identities=27%  Similarity=0.528  Sum_probs=134.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|++|+|||||++++..+.+...+.++....+...+..++..+.+.+|||||++.+..++..++.++|++++|+|
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999999988888888776666667778888899999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHH-HHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhCC-cEEEe
Q psy8700          88 CTSRQSLEELRPIW-EVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWGC-HFMET  153 (200)
Q Consensus        88 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~v  153 (200)
                      ++++.++..+...| ..+...      .+..|+++++||+|+.+..            .+...+...+++..++ +++++
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~------~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  154 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEY------APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVEC  154 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh------CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence            99999999987544 444332      2668999999999986432            3445566777777886 79999


Q ss_pred             cccCCCcHHHHHHHHHHHH
Q psy8700         154 SAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~  172 (200)
                      ||++|.|++++|+.+.+.+
T Consensus       155 Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         155 SALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             cCCcCCCHHHHHHHHHHHh
Confidence            9999999999999998764

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=1.1e-30  Score=181.25  Aligned_cols=161  Identities=36%  Similarity=0.525  Sum_probs=139.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++....+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999988776677766433 45677788889999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|+++++++.....|+..+....     .+..|+++++||+|+.........+...+....+++++++||++|.|+.++|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  155 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNA-----SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELF  155 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC-----CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            99999999999999988887655     2668999999999998666556666677777778999999999999999999


Q ss_pred             HHHHHHH
Q psy8700         166 AELLNLE  172 (200)
Q Consensus       166 ~~i~~~~  172 (200)
                      +++.+.+
T Consensus       156 ~~l~~~l  162 (163)
T cd01860         156 TEIAKKL  162 (163)
T ss_pred             HHHHHHh
Confidence            9998865

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=1.4e-30  Score=180.31  Aligned_cols=160  Identities=33%  Similarity=0.534  Sum_probs=136.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|+|||||++++..+.+...+.++..... ...+...+..+.+.+||+||++.+..++..++.++|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999887666655554333 345555677789999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |+++++++..+..|...+.....     .+.|+++++||+|+.........+...+....+++++++|++++.|+.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-----~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~  155 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRG-----NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFL  155 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-----CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999998888877663     3689999999999987666666666777777889999999999999999999


Q ss_pred             HHHHHH
Q psy8700         167 ELLNLE  172 (200)
Q Consensus       167 ~i~~~~  172 (200)
                      ++.+.+
T Consensus       156 ~l~~~~  161 (162)
T cd04123         156 SLAKRM  161 (162)
T ss_pred             HHHHHh
Confidence            998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=8.3e-31  Score=182.83  Aligned_cols=162  Identities=22%  Similarity=0.324  Sum_probs=134.4

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .+.+||+++|.+|||||||+++++++.+. ..+.|+....+. ..+..++..+.+.+||++|++.+..+...++.++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46799999999999999999999999887 778888876553 4566778888999999999999988999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNV  161 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i  161 (200)
                      ++|+|++++.++..+..|+..+..       ..+.|+++|+||+|+.+.......+...+.+..++ .++++||+++.|+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~-------~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  154 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM-------LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS  154 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc-------CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccH
Confidence            999999999999888777764421       23589999999999965544333344556666776 5799999999999


Q ss_pred             HHHHHHHHHHHh
Q psy8700         162 KELFAELLNLEK  173 (200)
Q Consensus       162 ~~~~~~i~~~~~  173 (200)
                      +++|+.+.+.+.
T Consensus       155 ~~lf~~l~~~~~  166 (169)
T cd01892         155 NELFTKLATAAQ  166 (169)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01862 Rab7 Rab7 subfamily

Probab=99.98  E-value=3.3e-30  Score=180.30  Aligned_cols=167  Identities=28%  Similarity=0.458  Sum_probs=137.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|||||||++++.+..+...+.++.+..+ .......+..+.+.+||+||++.+..++..+++++|++++++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999888777666665333 345566777789999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC-CcEEEecccCCCcHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKELF  165 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~~~  165 (200)
                      |++++.++.....|...+...... ....+.|+++|+||+|+..+......+...+....+ .+++++|+++|.|+.++|
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  159 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASP-SDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF  159 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCc-cCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence            999999999888877766554421 123468999999999998655555556666667776 699999999999999999


Q ss_pred             HHHHHHHhcc
Q psy8700         166 AELLNLEKNR  175 (200)
Q Consensus       166 ~~i~~~~~~~  175 (200)
                      +++.+.+.+.
T Consensus       160 ~~i~~~~~~~  169 (172)
T cd01862         160 ETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHhc
Confidence            9999977654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.98  E-value=1.5e-30  Score=185.32  Aligned_cols=155  Identities=25%  Similarity=0.383  Sum_probs=132.5

Q ss_pred             ECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCCh
Q psy8700          13 FGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSR   91 (200)
Q Consensus        13 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   91 (200)
                      +|.+|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..++++++++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888878888886443 45667788889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy8700          92 QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL  171 (200)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~  171 (200)
                      .++..+..|...+....      +..|+++|+||+|+... ..... ...+++..++.|++|||++|.||.++|+++.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~------~~~piilvgNK~Dl~~~-~v~~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~  152 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC------ENIPIVLCGNKVDVKDR-KVKAK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLARK  152 (200)
T ss_pred             HHHHHHHHHHHHHHHhC------CCCCEEEEEECcccccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999888887654      56899999999998643 33332 345666778899999999999999999999998


Q ss_pred             Hhcc
Q psy8700         172 EKNR  175 (200)
Q Consensus       172 ~~~~  175 (200)
                      +.+.
T Consensus       153 i~~~  156 (200)
T smart00176      153 LIGD  156 (200)
T ss_pred             HHhc
Confidence            7554

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0091|consensus

Probab=99.97  E-value=3.2e-31  Score=174.76  Aligned_cols=167  Identities=32%  Similarity=0.422  Sum_probs=146.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEE-EeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVI-SCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      .++++++|++-+|||||++++..+++.+...|+.+ +++...+ .-.+..+++++|||+|+++++++...|+++.-++++
T Consensus         8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll   87 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL   87 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence            37899999999999999999999999888888887 3333322 235677999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|++++++|+.+..|+.......+   .+.+.-+.+|++|.|+.+++++.-++++.++...|..|+++|+++|.|+++.
T Consensus        88 vyditnr~sfehv~~w~~ea~m~~q---~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen   88 VYDITNRESFEHVENWVKEAAMATQ---GPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             EEeccchhhHHHHHHHHHHHHHhcC---CCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence            9999999999999999998888774   2333444589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccc
Q psy8700         165 FAELLNLEKNRN  176 (200)
Q Consensus       165 ~~~i~~~~~~~~  176 (200)
                      |..+.+.+...-
T Consensus       165 F~mlaqeIf~~i  176 (213)
T KOG0091|consen  165 FDMLAQEIFQAI  176 (213)
T ss_pred             HHHHHHHHHHHH
Confidence            999988775443

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=6.9e-30  Score=178.24  Aligned_cols=167  Identities=32%  Similarity=0.420  Sum_probs=138.7

Q ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccC
Q psy8700           1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG   79 (200)
Q Consensus         1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   79 (200)
                      |++....+||+++|++|||||||++++..+.+.+.+.++.+ ......+..++..+.+.+||+||+..+......++..+
T Consensus         1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   80 (169)
T cd04114           1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (169)
T ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence            55545679999999999999999999998777666666655 33344566677778999999999999999889999999


Q ss_pred             CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC
Q psy8700          80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH  159 (200)
Q Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  159 (200)
                      |++++|+|++++.++..+..|...+....     ....|+++++||+|+.+..+........+......+++++||++|.
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~  155 (169)
T cd04114          81 NALILTYDITCEESFRCLPEWLREIEQYA-----NNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESD  155 (169)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence            99999999999999999888887776654     2468999999999998766666665666666667899999999999


Q ss_pred             cHHHHHHHHHHHH
Q psy8700         160 NVKELFAELLNLE  172 (200)
Q Consensus       160 ~i~~~~~~i~~~~  172 (200)
                      |+.++|++|.+.+
T Consensus       156 gv~~l~~~i~~~~  168 (169)
T cd04114         156 NVEKLFLDLACRL  168 (169)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=5.5e-30  Score=177.36  Aligned_cols=159  Identities=33%  Similarity=0.495  Sum_probs=134.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|||||||++++.+..+...+.++.+..+. ..+..++..+.+++||+||++.+..+...+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            68999999999999999999998876666777665443 34456677789999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |++++.++..+..|+..+.....    ....|+++|+||+|+... .....+...+....+++++++||++|.|+.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~----~~~~~~~iv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  155 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYST----NNDIVKMLVGNKIDKENR-EVTREEGLKFARKHNMLFIETSAKTRDGVQQAFE  155 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCC----CCCCcEEEEEECCccccc-ccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHH
Confidence            99999999999998888877653    467899999999999733 3344556677777889999999999999999999


Q ss_pred             HHHHH
Q psy8700         167 ELLNL  171 (200)
Q Consensus       167 ~i~~~  171 (200)
                      .+.+.
T Consensus       156 ~~~~~  160 (161)
T cd01863         156 ELVEK  160 (161)
T ss_pred             HHHHh
Confidence            98874

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd00876 Ras Ras family

Probab=99.97  E-value=3.7e-30  Score=177.87  Aligned_cols=159  Identities=53%  Similarity=0.847  Sum_probs=140.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      ||+++|++|||||||++++++..+...+.++....+......++..+.+++||+||...+..+...+++.+|++++|+|.
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            68999999999999999999888878888887766666666676778999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHH
Q psy8700          89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL  168 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i  168 (200)
                      ++++++.....|+..+.....    ....|+++++||+|+.............+....+++++++|++++.|++++|++|
T Consensus        81 ~~~~s~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l  156 (160)
T cd00876          81 TDRESFEEIKGYREQILRVKD----DEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLL  156 (160)
T ss_pred             CCHHHHHHHHHHHHHHHHhcC----CCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Confidence            999999999999999888773    2578999999999998766666667777777778899999999999999999999


Q ss_pred             HHH
Q psy8700         169 LNL  171 (200)
Q Consensus       169 ~~~  171 (200)
                      .+.
T Consensus       157 ~~~  159 (160)
T cd00876         157 VRE  159 (160)
T ss_pred             Hhh
Confidence            874

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=8.7e-30  Score=182.03  Aligned_cols=162  Identities=43%  Similarity=0.656  Sum_probs=134.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      ||+++|++|||||||+++++.+.+...+.++........+...+..+.+++||+||+..+..++..++..+|++++|+|+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999998877777777655556666777778999999999999998989999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc-cccCHHHHHHHHH-HhCCcEEEecccCCCcHHHHHH
Q psy8700          89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN-REVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      +++.++..+..|+..+.....    ....|++||+||+|+... ............. .++.+++++||++|.|+.++|+
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  156 (198)
T cd04147          81 DDPESFEEVERLREEILEVKE----DKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFK  156 (198)
T ss_pred             CCHHHHHHHHHHHHHHHHhcC----CCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHH
Confidence            999999999999888877653    356899999999998653 3333333333222 3457899999999999999999


Q ss_pred             HHHHHHhc
Q psy8700         167 ELLNLEKN  174 (200)
Q Consensus       167 ~i~~~~~~  174 (200)
                      ++.+.+..
T Consensus       157 ~l~~~~~~  164 (198)
T cd04147         157 ELLRQANL  164 (198)
T ss_pred             HHHHHhhc
Confidence            99997753

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=1e-29  Score=180.16  Aligned_cols=174  Identities=29%  Similarity=0.463  Sum_probs=137.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      .||+++|++|+|||||++++..+.+.+.+.++....+...+..++..+.+.+||++|++.+......++.++++++++++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999988777666676665555566667777889999999998887777778889999999999


Q ss_pred             CCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc----------cccCHHHHHHHHHHhCC-cEEEecc
Q psy8700          88 CTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETEN----------REVSAAEGEAEAKMWGC-HFMETSA  155 (200)
Q Consensus        88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~-~~~~vSa  155 (200)
                      +++.+++..+.. |+..+....      ++.|+++|+||+|+.+.          ......+...+++..+. +||++||
T Consensus        82 i~~~~s~~~~~~~~~~~i~~~~------~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  155 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRRYC------PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSA  155 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccC
Confidence            999999999875 666665433      46999999999998542          23334556677778885 8999999


Q ss_pred             cCCCcHHHHHHHHHHHHhccchhHHHhhhcccccccccCCcccc
Q psy8700         156 KTNHNVKELFAELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSV  199 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  199 (200)
                      ++|.|++++|+++.+.+            ...+.++...+||.+
T Consensus       156 ~~~~~v~~~f~~l~~~~------------~~~~~~~~~~~~~~~  187 (187)
T cd04129         156 LTGEGVDDVFEAATRAA------------LLVRKSEPGAGCCII  187 (187)
T ss_pred             CCCCCHHHHHHHHHHHH------------hcccCcccccCcccC
Confidence            99999999999999744            233344455577753

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=1.5e-29  Score=177.47  Aligned_cols=159  Identities=30%  Similarity=0.502  Sum_probs=130.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      .||+++|++|||||||++++..+.+...+.++....+...+.+++..+.+.+|||+|++.+...+..++.++|++++|+|
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            58999999999999999999999888888888876666666777888899999999999998888889999999999999


Q ss_pred             CCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhCC-cEEEe
Q psy8700          88 CTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWGC-HFMET  153 (200)
Q Consensus        88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~v  153 (200)
                      +++++++..+.. |...+...      .++.|+++|+||.|+....            .........++...+. +++++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~------~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~  155 (175)
T cd01870          82 IDSPDSLENIPEKWTPEVKHF------CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMEC  155 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh------CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEe
Confidence            999999988865 44444432      2568999999999986432            2223445555666664 89999


Q ss_pred             cccCCCcHHHHHHHHHHHH
Q psy8700         154 SAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~  172 (200)
                      ||++|.|++++|+++.+.+
T Consensus       156 Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         156 SAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             ccccCcCHHHHHHHHHHHh
Confidence            9999999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=1.7e-29  Score=176.52  Aligned_cols=158  Identities=32%  Similarity=0.591  Sum_probs=131.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|++|||||||+++|.+..+...+.++....+......++..+.+++||+||++.+......++..+|++++|+|
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999999887777777776666666777888999999999999888888888999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc-----------cCHHHHHHHHHHhCC-cEEEecc
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE-----------VSAAEGEAEAKMWGC-HFMETSA  155 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~~~~vSa  155 (200)
                      .+++.++......|.......     ....|+++|+||+|+.....           ....+...+....+. +++++||
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  155 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHY-----CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSA  155 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeec
Confidence            999999888766554333333     24799999999999976543           234556667777777 9999999


Q ss_pred             cCCCcHHHHHHHHHH
Q psy8700         156 KTNHNVKELFAELLN  170 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~  170 (200)
                      ++|.|+.++|++|.+
T Consensus       156 ~~~~gi~~l~~~i~~  170 (171)
T cd00157         156 LTQEGVKEVFEEAIR  170 (171)
T ss_pred             CCCCCHHHHHHHHhh
Confidence            999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00154 Rab Rab family

Probab=99.97  E-value=2.7e-29  Score=173.04  Aligned_cols=157  Identities=42%  Similarity=0.631  Sum_probs=134.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|||||||++++.+..+...+.++.+..+ ......++....+.+||+||+..+......+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999888777666666444 345555667789999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |+++++++..+..|+..+.....     ...|+++++||+|+.........+...+....+.+++++|++++.|+.++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  155 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAP-----ENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQ  155 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-----CCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence            99999999999998888877662     5689999999999975555566666777777788999999999999999999


Q ss_pred             HHH
Q psy8700         167 ELL  169 (200)
Q Consensus       167 ~i~  169 (200)
                      +|.
T Consensus       156 ~i~  158 (159)
T cd00154         156 SLA  158 (159)
T ss_pred             HHh
Confidence            986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=2e-29  Score=178.03  Aligned_cols=165  Identities=17%  Similarity=0.230  Sum_probs=124.9

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEe-CCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC-NKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ..+||+++|++|||||||++++..+.+... .|+.+... ...+.. ++..+.+.+|||||++++..++..++.++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            368999999999999999999998776543 55554332 222322 345689999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH--H----hCCcEEEecccC
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK--M----WGCHFMETSAKT  157 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~----~~~~~~~vSa~~  157 (200)
                      +|+|+++++++.....|+..+.....    ..+.|++||+||+|+.+...  ..+...+..  .    .+++++++||++
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~----~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~  154 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSE----NQGVPVLVLANKQDLPNALS--VSEVEKLLALHELSASTPWHVQPACAII  154 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhh----cCCCcEEEEEECcCccccCC--HHHHHHHhCccccCCCCceEEEEeeccc
Confidence            99999999998888888777665542    35689999999999864322  222222211  1    124688999999


Q ss_pred             CCcHHHHHHHHHHHHhccch
Q psy8700         158 NHNVKELFAELLNLEKNRNI  177 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~~~~~~  177 (200)
                      |.|+++++++|.+.+.+...
T Consensus       155 ~~gi~~l~~~l~~~l~~~~~  174 (183)
T cd04152         155 GEGLQEGLEKLYEMILKRRK  174 (183)
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence            99999999999988854433

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=8.2e-30  Score=178.77  Aligned_cols=158  Identities=20%  Similarity=0.256  Sum_probs=121.1

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||++++..+.+. .+.|+.+.... ...  ...+.+++|||||++.+..++..+++++|++++
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVT--YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEE--ECCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            34699999999999999999999877663 45666654433 222  245789999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccCCC
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKTNH  159 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~  159 (200)
                      |+|+++++++.....++..+....    ..++.|++||+||.|+.+...  ..+......     ...+.++++||++|.
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~----~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  160 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNED----ELRDAVILVFANKQDLPDAMK--AAEITEKLGLHSIRDRNWYIQPTCATSGD  160 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCH----hhcCCcEEEEEeCcCcccCCC--HHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence            999999999999888887765433    135689999999999865432  111111111     112357789999999


Q ss_pred             cHHHHHHHHHHHH
Q psy8700         160 NVKELFAELLNLE  172 (200)
Q Consensus       160 ~i~~~~~~i~~~~  172 (200)
                      |+.++|++|.+.+
T Consensus       161 gv~e~~~~l~~~~  173 (175)
T smart00177      161 GLYEGLTWLSNNL  173 (175)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=2.5e-29  Score=177.03  Aligned_cols=157  Identities=20%  Similarity=0.271  Sum_probs=121.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||++++..+.+. .+.|+.+.... .  ++...+.+++||+||++.++.++..+++++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            35689999999999999999999877664 45666654332 2  23345789999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC--------cEEEeccc
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC--------HFMETSAK  156 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~vSa~  156 (200)
                      |+|+++++++.....++..+....    ..++.|++|++||.|+.+...  ..+   .....++        .++++||+
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~----~~~~~piilv~NK~Dl~~~~~--~~~---~~~~l~l~~~~~~~~~~~~~Sa~  161 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNED----ELRDAVLLVFANKQDLPNAMN--AAE---ITDKLGLHSLRQRHWYIQSTCAT  161 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCH----hhCCCCEEEEEECCCCCCCCC--HHH---HHHHhCccccCCCceEEEeccCC
Confidence            999999999988777666554322    135689999999999876432  222   2222222        35689999


Q ss_pred             CCCcHHHHHHHHHHHHhc
Q psy8700         157 TNHNVKELFAELLNLEKN  174 (200)
Q Consensus       157 ~~~~i~~~~~~i~~~~~~  174 (200)
                      +|.|+.++|++|.+.+..
T Consensus       162 ~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        162 SGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999887654

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=8.7e-30  Score=177.47  Aligned_cols=156  Identities=15%  Similarity=0.256  Sum_probs=120.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      .+.+||+++|++|||||||++++..+.+. .+.|+.+..+. .+.  ...+.+++|||||++++..++..++.++|++++
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            45789999999999999999999876653 35566654433 222  245789999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-----hCCcEEEecccCCC
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-----WGCHFMETSAKTNH  159 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~vSa~~~~  159 (200)
                      |+|++++.++.....++..+.....    ..+.|++||+||+|+.+..  ...+.......     ...+++++||++|.
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~----~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~  156 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDRE----MRDALLLVFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGD  156 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHh----hcCCcEEEEEECcCCccCC--CHHHHHHHcCCCccCCCcEEEEEeeCCCCC
Confidence            9999999999888887766654321    3568999999999986532  23333332211     12368999999999


Q ss_pred             cHHHHHHHHHH
Q psy8700         160 NVKELFAELLN  170 (200)
Q Consensus       160 ~i~~~~~~i~~  170 (200)
                      |+.++|++|.+
T Consensus       157 gv~~~~~~l~~  167 (168)
T cd04149         157 GLYEGLTWLSS  167 (168)
T ss_pred             ChHHHHHHHhc
Confidence            99999999865

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=5.4e-30  Score=177.89  Aligned_cols=153  Identities=22%  Similarity=0.304  Sum_probs=122.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      .|+++|++|||||||++++.+..+...+.|+.+...   ..++...+.+.+||+||++.+..++..+++++|++++|+|.
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            489999999999999999999877777778776432   23345568999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH----HHHHHHHHHhCCcEEEecccC------C
Q psy8700          89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA----AEGEAEAKMWGCHFMETSAKT------N  158 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~vSa~~------~  158 (200)
                      +++.++.....|+..+...      .++.|+++|+||.|+.+......    .....+++..+++++++||++      +
T Consensus        78 t~~~s~~~~~~~l~~~~~~------~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~  151 (164)
T cd04162          78 ADSERLPLARQELHQLLQH------PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRM  151 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhC------CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHH
Confidence            9999988888877666432      25689999999999976553322    122334445567899988888      9


Q ss_pred             CcHHHHHHHHHH
Q psy8700         159 HNVKELFAELLN  170 (200)
Q Consensus       159 ~~i~~~~~~i~~  170 (200)
                      +|++++|+.+++
T Consensus       152 ~~v~~~~~~~~~  163 (164)
T cd04162         152 EAVKDLLSQLIN  163 (164)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998875

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0081|consensus

Probab=99.97  E-value=7.2e-31  Score=172.39  Aligned_cols=164  Identities=28%  Similarity=0.451  Sum_probs=144.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEe---------CCcEEEEEEEeCCCCCCChhhHhhccc
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC---------NKNICTLQITDTTGSHQFPAMQRLSIS   77 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~D~~G~~~~~~~~~~~~~   77 (200)
                      +|.+.+|++|+|||||+.++..+++....+++.+-.+ .+.+..         .+..+.+++|||+|+++++++..++++
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR   89 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR   89 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence            5778899999999999999999999888888877443 333322         245589999999999999999999999


Q ss_pred             cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC
Q psy8700          78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT  157 (200)
Q Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  157 (200)
                      ++-+++++||+++..+|-+++.|+..+....    -+.++-+++++||+|+.+.+.+...++..++..+++|||++||-+
T Consensus        90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA----YcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t  165 (219)
T KOG0081|consen   90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA----YCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT  165 (219)
T ss_pred             hhccceEEEeccchHHHHHHHHHHHHHHHhh----ccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence            9999999999999999999999999998877    467788999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHhcc
Q psy8700         158 NHNVKELFAELLNLEKNR  175 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~~~~  175 (200)
                      |.|+.+..+.+...+-++
T Consensus       166 g~Nv~kave~LldlvM~R  183 (219)
T KOG0081|consen  166 GTNVEKAVELLLDLVMKR  183 (219)
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999998888866444

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.2e-29  Score=175.23  Aligned_cols=153  Identities=19%  Similarity=0.271  Sum_probs=117.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|.+|||||||++++..+.+. .+.|+.+.... ..  ....+.+.+||+||++.+..++..+++++|++++|+|
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EE--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            48999999999999999999877765 46676654332 22  2245789999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-HHHHH----HHhCCcEEEecccCCCcHH
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-GEAEA----KMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++++.++.....++..+.....    ..+.|++|++||.|+.+...  ..+ ...+.    ...++.++++||++|.|++
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~----~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~  150 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDE----LRDAVLLVFANKQDLPNAMS--AAEVTDKLGLHSLRNRNWYIQATCATSGDGLY  150 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHH----hcCCCEEEEEECCCCCCCCC--HHHHHHHhCccccCCCCEEEEEeeCCCCCCHH
Confidence            9999999998888876654321    24589999999999865322  111 11111    1112357899999999999


Q ss_pred             HHHHHHHH
Q psy8700         163 ELFAELLN  170 (200)
Q Consensus       163 ~~~~~i~~  170 (200)
                      ++|++|.+
T Consensus       151 ~~~~~l~~  158 (159)
T cd04150         151 EGLDWLSN  158 (159)
T ss_pred             HHHHHHhc
Confidence            99999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=4.5e-29  Score=174.17  Aligned_cols=158  Identities=19%  Similarity=0.245  Sum_probs=122.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      ||+++|++|||||||++++.+..+.. +.|+.+.... .+  +...+.+++|||||+..+...+..++.++|++++|+|+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TV--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EE--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            68999999999999999999876543 5666543332 22  33457899999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC------CcEEEecccCCCcHH
Q psy8700          89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG------CHFMETSAKTNHNVK  162 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~vSa~~~~~i~  162 (200)
                      +++.++.....|+..+.+...    ..+.|++|++||+|+...  ....+...+....+      +.++++||++|.|+.
T Consensus        77 s~~~s~~~~~~~~~~~~~~~~----~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  150 (169)
T cd04158          77 SHRDRVSEAHSELAKLLTEKE----LRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLY  150 (169)
T ss_pred             CcHHHHHHHHHHHHHHhcChh----hCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHH
Confidence            999999999888877765432    345899999999998643  23333333332221      268899999999999


Q ss_pred             HHHHHHHHHHhccc
Q psy8700         163 ELFAELLNLEKNRN  176 (200)
Q Consensus       163 ~~~~~i~~~~~~~~  176 (200)
                      ++|++|.+.+.+..
T Consensus       151 ~~f~~l~~~~~~~~  164 (169)
T cd04158         151 EGLDWLSRQLVAAG  164 (169)
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999998765443

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.2e-29  Score=178.94  Aligned_cols=160  Identities=18%  Similarity=0.227  Sum_probs=120.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||++++..+.+.. +.|+.+..+. .+  +...+.+++|||||++.+..++..++.++|++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TV--EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EE--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            456999999999999999999998776643 5566654332 22  2345789999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccCCC
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKTNH  159 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~  159 (200)
                      |+|+++++++.....++..+....    ...+.|++||+||.|+.+...  ..+......     ...+.++++||++|.
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~----~~~~~piilv~NK~Dl~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~  164 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSED----ELRDAVLLVFANKQDLPNAMS--TTEVTEKLGLHSVRQRNWYIQGCCATTAQ  164 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCH----hhcCCCEEEEEeCCCCCCCCC--HHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence            999999999998887776654322    135689999999999865321  111111111     112256789999999


Q ss_pred             cHHHHHHHHHHHHhc
Q psy8700         160 NVKELFAELLNLEKN  174 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~  174 (200)
                      |++++|++|.+.+.+
T Consensus       165 gv~e~~~~l~~~i~~  179 (182)
T PTZ00133        165 GLYEGLDWLSANIKK  179 (182)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999987643

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=4.6e-28  Score=168.61  Aligned_cols=159  Identities=30%  Similarity=0.367  Sum_probs=120.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|.+|||||||++++..+.+...+.++.+ .+......++..+.+.+|||||...+...+..++..+|++++|+|
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            4899999999999999999999888655443333 233334456677899999999998888877888899999999999


Q ss_pred             CCChhHHHHHHHHH-HHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--HHHHHHHHHH-hCC-cEEEecccCCCcHH
Q psy8700          88 CTSRQSLEELRPIW-EVIRETKGGANELASIPIMLVGNKCDETENREVS--AAEGEAEAKM-WGC-HFMETSAKTNHNVK  162 (200)
Q Consensus        88 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~-~~~-~~~~vSa~~~~~i~  162 (200)
                      ++++.++..+..+| ..+....      .+.|+++|+||+|+.+.....  .......... .+. +++++||++|.|++
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~------~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  153 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLG------VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVS  153 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence            99999999986544 4444332      468999999999997654321  1112222222 233 79999999999999


Q ss_pred             HHHHHHHHHHh
Q psy8700         163 ELFAELLNLEK  173 (200)
Q Consensus       163 ~~~~~i~~~~~  173 (200)
                      ++|+.+...+.
T Consensus       154 ~lf~~~~~~~~  164 (166)
T cd01893         154 EVFYYAQKAVL  164 (166)
T ss_pred             HHHHHHHHHhc
Confidence            99999988664

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=1.8e-28  Score=171.81  Aligned_cols=158  Identities=17%  Similarity=0.244  Sum_probs=121.2

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .+...+||+++|++|||||||++++.+..+ ..+.++.+.. ...+..+  .+.+.+|||||++.+..++..++.++|++
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            356779999999999999999999998744 3445555422 2233333  46899999999999888999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccC
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKT  157 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~  157 (200)
                      ++|+|++++.++.....|+..+....    ...+.|++||+||+|+.+..  ...+......     ..+++++++||++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEE----RLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVT  159 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCh----hhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCC
Confidence            99999999999988887776665432    13568999999999986543  2222222221     2346899999999


Q ss_pred             CCcHHHHHHHHHH
Q psy8700         158 NHNVKELFAELLN  170 (200)
Q Consensus       158 ~~~i~~~~~~i~~  170 (200)
                      |.|++++|+++.+
T Consensus       160 g~gi~~l~~~l~~  172 (173)
T cd04154         160 GEGLLQGIDWLVD  172 (173)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG0393|consensus

Probab=99.96  E-value=8.2e-29  Score=171.56  Aligned_cols=167  Identities=29%  Similarity=0.523  Sum_probs=145.6

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeC-CcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCN-KNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ..+|++++|+.++|||+|+-.+..+.++..|.|+..+.+...+.++ +..+.+.+|||+|+++|.++++..+..+|.+++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~   82 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL   82 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence            4689999999999999999999999999999999999999889895 999999999999999999999899999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cEE
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HFM  151 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~  151 (200)
                      +|++.++.++.++..-|-.-...     .++..|+++|++|.||.+.            ..+...+....++..|+ .|+
T Consensus        83 cfsv~~p~S~~nv~~kW~pEi~~-----~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~  157 (198)
T KOG0393|consen   83 CFSVVSPESFENVKSKWIPEIKH-----HCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYL  157 (198)
T ss_pred             EEEcCChhhHHHHHhhhhHHHHh-----hCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceee
Confidence            99999999999977666332222     2588999999999999743            24556677888888885 899


Q ss_pred             EecccCCCcHHHHHHHHHHHHhccch
Q psy8700         152 ETSAKTNHNVKELFAELLNLEKNRNI  177 (200)
Q Consensus       152 ~vSa~~~~~i~~~~~~i~~~~~~~~~  177 (200)
                      ++||++..|++++|+...........
T Consensus       158 EcSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  158 ECSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             eehhhhhCCcHHHHHHHHHHHhcccc
Confidence            99999999999999999998755444

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=1.6e-27  Score=172.44  Aligned_cols=173  Identities=26%  Similarity=0.388  Sum_probs=141.2

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGH   80 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   80 (200)
                      ......+||+++|++|||||||+++++.+.+...+.++.+..+ ......++..+.+.+|||+|++.+..++..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            3466789999999999999999999988888888888887544 344555777899999999999999989999999999


Q ss_pred             EEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCc
Q psy8700          81 AFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHN  160 (200)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~  160 (200)
                      ++++|+|+++..++..+..|...+....      .+.|+++++||+|+.+.. ... ....+....++.++++|+++|.|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~------~~~~i~lv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~e~Sa~~~~~  155 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVC------ENIPIVLVGNKVDVKDRQ-VKA-RQITFHRKKNLQYYDISAKSNYN  155 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhC------CCCCEEEEEECccCcccc-CCH-HHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999999999999888877654      458999999999985432 222 22345566778999999999999


Q ss_pred             HHHHHHHHHHHHhccchhHHHh
Q psy8700         161 VKELFAELLNLEKNRNISLQLE  182 (200)
Q Consensus       161 i~~~~~~i~~~~~~~~~~~~~~  182 (200)
                      ++++|.+|.+.+.....-+.++
T Consensus       156 v~~~f~~ia~~l~~~p~~~~ld  177 (215)
T PTZ00132        156 FEKPFLWLARRLTNDPNLVFVG  177 (215)
T ss_pred             HHHHHHHHHHHHhhcccceecC
Confidence            9999999999887655433333

>KOG0097|consensus

Probab=99.96  E-value=3.2e-28  Score=157.19  Aligned_cols=171  Identities=29%  Similarity=0.384  Sum_probs=150.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+|.+++|+-|+|||+|+..+...++-..-.++++..+ ...+.+.++++++++|||+|+++++...+.|++.+.+.+.|
T Consensus        11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv   90 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   90 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence            58999999999999999999999888776677777444 44667789999999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|++.+.++..+..|+.......     .++..+++++||.|+..++++.-.++..++.+.|.-++++||++|.|+.+.|
T Consensus        91 yditrrstynhlsswl~dar~lt-----npnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedaf  165 (215)
T KOG0097|consen   91 YDITRRSTYNHLSSWLTDARNLT-----NPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF  165 (215)
T ss_pred             EEehhhhhhhhHHHHHhhhhccC-----CCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence            99999999999999998777666     3778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccchhHHHh
Q psy8700         166 AELLNLEKNRNISLQLE  182 (200)
Q Consensus       166 ~~i~~~~~~~~~~~~~~  182 (200)
                      -.....+.+.-++..++
T Consensus       166 le~akkiyqniqdgsld  182 (215)
T KOG0097|consen  166 LETAKKIYQNIQDGSLD  182 (215)
T ss_pred             HHHHHHHHHhhhcCccc
Confidence            87777666555444443

>KOG0083|consensus

Probab=99.96  E-value=7.7e-30  Score=162.95  Aligned_cols=161  Identities=31%  Similarity=0.532  Sum_probs=143.0

Q ss_pred             EEECCCCCCHHHHHHHHhhCCCC-CCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700          11 VVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus        11 ~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      +++|+++.|||+|+-++..+.+- .+.+++.+-.++ +....++.++++++|||+|++++++....|++.+|++++++|+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            47899999999999888877663 445666664444 5667789999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHH
Q psy8700          89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL  168 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i  168 (200)
                      .+..+|++.+.|+..+.++..     ....+.+++||+|+...+.+...+...++..+++|++++||++|.|++-.|-.|
T Consensus        81 ankasfdn~~~wlsei~ey~k-----~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~i  155 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAK-----EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAI  155 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHH-----hhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHH
Confidence            999999999999999999885     667889999999998888888888999999999999999999999999999999


Q ss_pred             HHHHhccc
Q psy8700         169 LNLEKNRN  176 (200)
Q Consensus       169 ~~~~~~~~  176 (200)
                      .+.+....
T Consensus       156 a~~l~k~~  163 (192)
T KOG0083|consen  156 AEELKKLK  163 (192)
T ss_pred             HHHHHHhc
Confidence            98876544

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=4.3e-28  Score=169.97  Aligned_cols=155  Identities=20%  Similarity=0.265  Sum_probs=118.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +.+||+++|++|+|||||++++..+.+.. +.++.+..+. ....  ..+.+.+||+||++.+...+..++..+|++++|
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            46899999999999999999999877653 4555543332 2222  356899999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-HHHHH----HHhCCcEEEecccCCCc
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-GEAEA----KMWGCHFMETSAKTNHN  160 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~~vSa~~~~~  160 (200)
                      +|+++++++.....++..+.....    ..+.|++|++||+|+.+..  ...+ ...+.    ...+++++++||++|.|
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~----~~~~p~viv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~g  163 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHED----LRKAVLLVLANKQDLKGAM--TPAEISESLGLTSIRDHTWHIQGCCALTGEG  163 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchh----hcCCCEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEecccCCCCC
Confidence            999999888887777766654331    3568999999999986532  1121 11111    22345789999999999


Q ss_pred             HHHHHHHHHH
Q psy8700         161 VKELFAELLN  170 (200)
Q Consensus       161 i~~~~~~i~~  170 (200)
                      ++++|++|.+
T Consensus       164 i~e~~~~l~~  173 (174)
T cd04153         164 LPEGLDWIAS  173 (174)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=9.2e-28  Score=166.32  Aligned_cols=155  Identities=16%  Similarity=0.211  Sum_probs=116.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC-CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTF-RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +|+++|++|||||||++++.+... ...+.|+.+..... .  ....+.+.+|||||+..+..++..++..+|++++|+|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   77 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID   77 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence            589999999999999999998753 45566666533221 2  2345789999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH---HH--HhCCcEEEecccCCCcHH
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE---AK--MWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~--~~~~~~~~vSa~~~~~i~  162 (200)
                      ++++.++.....++..+......  .....|+++|+||+|+.+...  ..+....   ..  ....+++++||++|.|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~  153 (162)
T cd04157          78 SSDRLRLVVVKDELELLLNHPDI--KHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLD  153 (162)
T ss_pred             CCcHHHHHHHHHHHHHHHcCccc--ccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence            99999888877777666543211  124689999999999865432  1111111   11  112358999999999999


Q ss_pred             HHHHHHHH
Q psy8700         163 ELFAELLN  170 (200)
Q Consensus       163 ~~~~~i~~  170 (200)
                      ++|++|.+
T Consensus       154 ~~~~~l~~  161 (162)
T cd04157         154 EGVQWLQA  161 (162)
T ss_pred             HHHHHHhc
Confidence            99999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.6e-26  Score=164.51  Aligned_cols=152  Identities=21%  Similarity=0.197  Sum_probs=121.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEe-----CCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC-----NKNICTLQITDTTGSHQFPAMQRLSISKGHA   81 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   81 (200)
                      +||+++|+.|+|||||++++..+.+...+.++.+..+ ...+..     ++..+.+++|||+|++.+..++..++.++++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999998888888877433 233333     2467899999999999999999999999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCC--------------CCCCCCcEEEEeeCCCCCcccccCHHH----HHHHH
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGA--------------NELASIPIMLVGNKCDETENREVSAAE----GEAEA  143 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~  143 (200)
                      +|+|||++++.+++.+..|+..+.......              ....+.|++||+||.|+.+.+......    ....+
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999998887653210              012468999999999997655444332    34456


Q ss_pred             HHhCCcEEEecccCCC
Q psy8700         144 KMWGCHFMETSAKTNH  159 (200)
Q Consensus       144 ~~~~~~~~~vSa~~~~  159 (200)
                      ...+++.++.++.++.
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            7788999998887664

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=1.5e-27  Score=164.98  Aligned_cols=153  Identities=19%  Similarity=0.285  Sum_probs=115.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      +|+++|++|||||||++++.+..+.. ..|+.+.... .+.. ...+.+.+||+||+..+...+..++..+|++++|+|.
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            68999999999999999999987643 3455543322 2222 3457899999999999888899999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHH------HHHHhCCcEEEecccCCCcHH
Q psy8700          89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEA------EAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      +++.++.....++..+....    ...+.|+++|+||+|+.....  ..+...      +....+++++++||++|.|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  151 (160)
T cd04156          78 SDEARLDESQKELKHILKNE----HIKGVPVVLLANKQDLPGALT--AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLA  151 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhch----hhcCCCEEEEEECcccccCcC--HHHHHHHcCCcccCCCCcEEEEecccccCCChH
Confidence            99998888888777665433    135689999999999864321  111111      111123469999999999999


Q ss_pred             HHHHHHHH
Q psy8700         163 ELFAELLN  170 (200)
Q Consensus       163 ~~~~~i~~  170 (200)
                      ++|++|.+
T Consensus       152 ~~~~~i~~  159 (160)
T cd04156         152 EAFRKLAS  159 (160)
T ss_pred             HHHHHHhc
Confidence            99999865

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=1.4e-27  Score=164.82  Aligned_cols=152  Identities=24%  Similarity=0.277  Sum_probs=112.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      ||+++|++++|||||++++..+.+. .+.++.+.... ..  +.....+++|||||+..+..++..++..++++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~-~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE-TV--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE-EE--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            6899999999999999999876654 34455443322 22  23457899999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH-HHH----HHhCCcEEEecccCCCcHHH
Q psy8700          89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE-AEA----KMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +++.++.....++..+....    ...+.|+++|+||+|+.+...  ..+.. .+.    ...+.+++++||++|.|+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~----~~~~~piiiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  150 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEE----ELKGAVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDE  150 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhch----hhcCCcEEEEEeCCCCCCCCC--HHHHHHHhCccccCCCcEEEEEeeccCCCCHHH
Confidence            99888777666665443322    135689999999999865331  11111 111    11124699999999999999


Q ss_pred             HHHHHHH
Q psy8700         164 LFAELLN  170 (200)
Q Consensus       164 ~~~~i~~  170 (200)
                      +|+++.+
T Consensus       151 l~~~l~~  157 (158)
T cd04151         151 GMDWLVN  157 (158)
T ss_pred             HHHHHhc
Confidence            9999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=1e-27  Score=166.91  Aligned_cols=154  Identities=19%  Similarity=0.251  Sum_probs=118.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      +|+++|++|||||||++++.+. +...+.|+.+... ..+..  ..+.+++||+||+..+..++..++.+++++++|+|+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            4899999999999999999976 5566677766432 23333  457899999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHH----HHHHHHhC--CcEEEecccCC----
Q psy8700          89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG----EAEAKMWG--CHFMETSAKTN----  158 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~~~~--~~~~~vSa~~~----  158 (200)
                      +++.++.....|+..+....    .....|++||+||.|+.+.........    ..+....+  +.++++||++|    
T Consensus        77 s~~~s~~~~~~~l~~l~~~~----~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~  152 (167)
T cd04161          77 SDDDRVQEVKEILRELLQHP----RVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK  152 (167)
T ss_pred             CchhHHHHHHHHHHHHHcCc----cccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence            99999999888887776543    135689999999999976542221111    11221222  46888999998    


Q ss_pred             --CcHHHHHHHHHH
Q psy8700         159 --HNVKELFAELLN  170 (200)
Q Consensus       159 --~~i~~~~~~i~~  170 (200)
                        .|+.+.|+||..
T Consensus       153 ~~~g~~~~~~wl~~  166 (167)
T cd04161         153 IDPSIVEGLRWLLA  166 (167)
T ss_pred             cccCHHHHHHHHhc
Confidence              899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=6.9e-27  Score=166.13  Aligned_cols=158  Identities=16%  Similarity=0.259  Sum_probs=120.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ....+||+++|++|||||||++++.+..+. .+.++..... ..+..+  ...+.+||+||+..+..++..++..+++++
T Consensus        16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            356799999999999999999999987763 4555554332 233333  357899999999988888899999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH----------------hC
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM----------------WG  147 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~  147 (200)
                      +|+|+++..++.....++..+....    ...+.|++|++||+|+...  ....+.......                ..
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~----~~~~~pvivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDE----ELANVPFLILGNKIDLPGA--VSEEELRQALGLYGTTTGKGVSLKVSGIRP  165 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCc----cccCCCEEEEEeCCCCCCC--cCHHHHHHHhCcccccccccccccccCcee
Confidence            9999999988888777777766533    2356899999999998642  223333333221                22


Q ss_pred             CcEEEecccCCCcHHHHHHHHHHH
Q psy8700         148 CHFMETSAKTNHNVKELFAELLNL  171 (200)
Q Consensus       148 ~~~~~vSa~~~~~i~~~~~~i~~~  171 (200)
                      .+++++||++|.|+.++|+++.+.
T Consensus       166 ~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         166 IEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEEEEeEecCCCChHHHHHHHHhh
Confidence            468999999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=6.9e-27  Score=161.36  Aligned_cols=152  Identities=20%  Similarity=0.318  Sum_probs=117.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      ||+++|.+|||||||++++.+... ..+.++.+... .....  ....+.+||+||+..+...+..++..+|++++|+|+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999998773 33444444322 22222  246899999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCCCcHHH
Q psy8700          89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~  163 (200)
                      ++++++.....++..+.....    ..+.|+++++||+|+......  .+.....     .....+++++||++|.|+.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~----~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  150 (158)
T cd00878          77 SDRERIEEAKEELHKLLNEEE----LKGVPLLIFANKQDLPGALSV--SELIEKLGLEKILGRRWHIQPCSAVTGDGLDE  150 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhCcc----cCCCcEEEEeeccCCccccCH--HHHHHhhChhhccCCcEEEEEeeCCCCCCHHH
Confidence            999999998888877766442    467899999999998764421  1111111     12345899999999999999


Q ss_pred             HHHHHHH
Q psy8700         164 LFAELLN  170 (200)
Q Consensus       164 ~~~~i~~  170 (200)
                      +|++|.+
T Consensus       151 ~~~~l~~  157 (158)
T cd00878         151 GLDWLLQ  157 (158)
T ss_pred             HHHHHhh
Confidence            9999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=9.9e-27  Score=164.40  Aligned_cols=159  Identities=16%  Similarity=0.197  Sum_probs=118.5

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      ..+..++|+++|++|||||||++++.+..+. .+.|+..... ..+..  ..+.+.+||+||+..+..++..++.+++++
T Consensus        13 ~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~i   88 (184)
T smart00178       13 LWNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS-EELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGI   88 (184)
T ss_pred             cccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce-EEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            3466799999999999999999999987653 2344433322 22222  346899999999999899999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH------------hCCcE
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM------------WGCHF  150 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~  150 (200)
                      ++|+|++++.++.....++..+....    ...+.|+++|+||+|+....  ...+.......            ....+
T Consensus        89 i~vvD~~~~~~~~~~~~~l~~l~~~~----~~~~~piliv~NK~Dl~~~~--~~~~i~~~l~l~~~~~~~~~~~~~~~~i  162 (184)
T smart00178       89 VYLVDAYDKERFAESKRELDALLSDE----ELATVPFLILGNKIDAPYAA--SEDELRYALGLTNTTGSKGKVGVRPLEV  162 (184)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcCh----hhcCCCEEEEEeCccccCCC--CHHHHHHHcCCCcccccccccCCceeEE
Confidence            99999999998888877776665432    13568999999999986432  22222211110            12359


Q ss_pred             EEecccCCCcHHHHHHHHHHH
Q psy8700         151 METSAKTNHNVKELFAELLNL  171 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~~  171 (200)
                      +++||++|.|++++++||.+.
T Consensus       163 ~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      163 FMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EEeecccCCChHHHHHHHHhh
Confidence            999999999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=1.2e-26  Score=161.47  Aligned_cols=153  Identities=20%  Similarity=0.287  Sum_probs=113.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC------CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTF------RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      +|+++|++|||||||++++.....      ...+.++...... .+..+  ...+.+|||||+..+...+..++..++++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   77 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI   77 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            589999999999999999976432      1223333332221 22233  46899999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-------HhCCcEEEecc
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-------MWGCHFMETSA  155 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~vSa  155 (200)
                      ++|+|.++++++.....++..+.....    ..+.|+++++||+|+.+...  ..+...+..       ..+.+++++||
T Consensus        78 v~vvd~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ilv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa  151 (167)
T cd04160          78 IYVIDSTDRERFEESKSALEKVLRNEA----LEGVPLLILANKQDLPDALS--VEEIKEVFQDKAEEIGRRDCLVLPVSA  151 (167)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhChh----hcCCCEEEEEEccccccCCC--HHHHHHHhccccccccCCceEEEEeeC
Confidence            999999999888888777777665432    35689999999999865432  222222211       12357999999


Q ss_pred             cCCCcHHHHHHHHHH
Q psy8700         156 KTNHNVKELFAELLN  170 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~  170 (200)
                      ++|.|+++++++|.+
T Consensus       152 ~~g~gv~e~~~~l~~  166 (167)
T cd04160         152 LEGTGVREGIEWLVE  166 (167)
T ss_pred             CCCcCHHHHHHHHhc
Confidence            999999999999865

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=2.1e-26  Score=161.25  Aligned_cols=159  Identities=23%  Similarity=0.326  Sum_probs=122.9

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +.+.+||+++|++||||||+++++..+... ...||.+.... .+..  ..+.+.+||.+|+..++..+..++.+++++|
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~-~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIE-EIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEE-EEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccc-eeee--CcEEEEEEeccccccccccceeeccccceeE
Confidence            478899999999999999999999876543 35555543332 2333  3458999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH------HhCCcEEEecccC
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK------MWGCHFMETSAKT  157 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~vSa~~  157 (200)
                      ||+|.++++.+......+..+....    .....|++|++||.|+.+...  ..+......      ...+.++.+||.+
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~----~~~~~piLIl~NK~D~~~~~~--~~~i~~~l~l~~l~~~~~~~v~~~sa~~  160 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDP----ELKDIPILILANKQDLPDAMS--EEEIKEYLGLEKLKNKRPWSVFSCSAKT  160 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSG----GGTTSEEEEEEESTTSTTSST--HHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred             EEEecccceeecccccchhhhcchh----hcccceEEEEeccccccCcch--hhHHHhhhhhhhcccCCceEEEeeeccC
Confidence            9999999998888877776666544    245789999999999876443  222222211      1234689999999


Q ss_pred             CCcHHHHHHHHHHHH
Q psy8700         158 NHNVKELFAELLNLE  172 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~  172 (200)
                      |+|+.+.++||.+.+
T Consensus       161 g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  161 GEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TBTHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcC
Confidence            999999999998864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG4252|consensus

Probab=99.95  E-value=6.7e-28  Score=161.52  Aligned_cols=167  Identities=29%  Similarity=0.402  Sum_probs=150.3

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ..+|.+++|..++||||++++++.+-+...|..+++..+ .....++++.+.+.+||++|++++..+..+|++.+.+.++
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            358999999999999999999999999999999988443 4455667777889999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      ||+.+|+.+|+....|.+.+....      .++|.++|-||+|+.++..+...+...+++...+.+|.+|++...|+..+
T Consensus        99 VFSTTDr~SFea~~~w~~kv~~e~------~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~v  172 (246)
T KOG4252|consen   99 VFSTTDRYSFEATLEWYNKVQKET------ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV  172 (246)
T ss_pred             EEecccHHHHHHHHHHHHHHHHHh------ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence            999999999999999999998866      77999999999999999988888889999999999999999999999999


Q ss_pred             HHHHHHHHhccchh
Q psy8700         165 FAELLNLEKNRNIS  178 (200)
Q Consensus       165 ~~~i~~~~~~~~~~  178 (200)
                      |..+.+.+.+...+
T Consensus       173 F~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  173 FAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999887654443

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=6.3e-26  Score=156.24  Aligned_cols=153  Identities=24%  Similarity=0.320  Sum_probs=118.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      .|+++|++|||||||++++.+..+...+.|+.+..... +...  .+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            37999999999999999999998877777777644432 2222  37899999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCCCcHHH
Q psy8700          89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~  163 (200)
                      ++..++.....++..+.....    ....|+++|+||+|+.+....  .......     ....++++++|+++|.|+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~----~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  151 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPS----LEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDI  151 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChh----hcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHH
Confidence            999888887777766654331    356899999999998654321  1111111     11235789999999999999


Q ss_pred             HHHHHHH
Q psy8700         164 LFAELLN  170 (200)
Q Consensus       164 ~~~~i~~  170 (200)
                      ++++|.+
T Consensus       152 l~~~l~~  158 (159)
T cd04159         152 VLDWLIK  158 (159)
T ss_pred             HHHHHhh
Confidence            9999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=1.9e-25  Score=155.94  Aligned_cols=158  Identities=21%  Similarity=0.236  Sum_probs=107.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCC-CcccceeEEEEeCCcEEEEEEEeCCCCCC----ChhhHhhc---cccCC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIP-TIEDTYRQVISCNKNICTLQITDTTGSHQ----FPAMQRLS---ISKGH   80 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~---~~~~~   80 (200)
                      .|+++|.+|||||||+++|.+........+ +............ ....+.+|||||+..    ...+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            589999999999999999987543111111 1111111112222 224799999999632    22223333   34599


Q ss_pred             EEEEEeeCCCh-hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-hCCcEEEecccCC
Q psy8700          81 AFILVYSCTSR-QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-WGCHFMETSAKTN  158 (200)
Q Consensus        81 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~  158 (200)
                      ++++|+|++++ .+++.+..|...+.....   .....|+++|+||+|+.+...... ....+... .+.+++++||+++
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~---~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~  156 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNP---ELLEKPRIVVLNKIDLLDEEELFE-LLKELLKELWGKPVFPISALTG  156 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCc---cccccccEEEEEchhcCCchhhHH-HHHHHHhhCCCCCEEEEecCCC
Confidence            99999999999 788888888877766532   124689999999999876554322 22333333 3678999999999


Q ss_pred             CcHHHHHHHHHHH
Q psy8700         159 HNVKELFAELLNL  171 (200)
Q Consensus       159 ~~i~~~~~~i~~~  171 (200)
                      .|++++|+++.+.
T Consensus       157 ~gi~~l~~~i~~~  169 (170)
T cd01898         157 EGLDELLRKLAEL  169 (170)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999874

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=9e-25  Score=162.90  Aligned_cols=145  Identities=23%  Similarity=0.252  Sum_probs=117.3

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeC-------------CcEEEEEEEeCCCCCCCh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCN-------------KNICTLQITDTTGSHQFP   69 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~~~D~~G~~~~~   69 (200)
                      +...+||+++|+.|||||||++++..+.+...+.++.+..+ ...+.++             +..+.++||||+|++.+.
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            45679999999999999999999999988888888887544 3334433             356889999999999999


Q ss_pred             hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCC-------CCCCCcEEEEeeCCCCCcccc------cCH
Q psy8700          70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGAN-------ELASIPIMLVGNKCDETENRE------VSA  136 (200)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~p~ivv~nK~Dl~~~~~------~~~  136 (200)
                      .++..++.+++++|+|||+++..++..+..|+..+........       .....|++||+||+|+.....      ...
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~  177 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV  177 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence            9999999999999999999999999999999999887642100       013589999999999965431      245


Q ss_pred             HHHHHHHHHhCC
Q psy8700         137 AEGEAEAKMWGC  148 (200)
Q Consensus       137 ~~~~~~~~~~~~  148 (200)
                      .++..++...++
T Consensus       178 e~a~~~A~~~g~  189 (334)
T PLN00023        178 DAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHcCC
Confidence            678888888775

>PTZ00099 rab6; Provisional

Probab=99.94  E-value=8.8e-25  Score=152.90  Aligned_cols=142  Identities=33%  Similarity=0.425  Sum_probs=121.8

Q ss_pred             CCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHh
Q psy8700          30 GTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETK  108 (200)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~  108 (200)
                      +.|.+.|.||.+ ......+.+++..+.+.||||+|++++..++..+++++|++++|||++++.++..+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            346677888887 4445667788888999999999999999999999999999999999999999999999988877654


Q ss_pred             CCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         109 GGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       109 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                           .+..|++||+||+|+.+...+...+...+....++.|+++||++|.|+.++|++|.+.+.+..
T Consensus        83 -----~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         83 -----GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             -----CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence                 256899999999999876666777777777788889999999999999999999999886543

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=8.2e-25  Score=153.99  Aligned_cols=153  Identities=20%  Similarity=0.242  Sum_probs=110.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC-------CCCCcCCCcc------ccee-EE--EEe---CCcEEEEEEEeCCCCCCCh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGT-------FRESYIPTIE------DTYR-QV--ISC---NKNICTLQITDTTGSHQFP   69 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~------~~~~-~~--~~~---~~~~~~~~~~D~~G~~~~~   69 (200)
                      +|+++|.+++|||||+++|++..       +...+.++.+      .+.. ..  ...   ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            58999999999999999998732       1122322221      1111 11  112   5667889999999999999


Q ss_pred             hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-
Q psy8700          70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-  148 (200)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-  148 (200)
                      .....++..+|++++|+|++++.+......|+.. ..        .+.|+++|+||+|+.+...  ......+....++ 
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~-~~--------~~~~iiiv~NK~Dl~~~~~--~~~~~~~~~~~~~~  150 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLA-LE--------NNLEIIPVINKIDLPSADP--ERVKQQIEDVLGLD  150 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHH-HH--------cCCCEEEEEECCCCCcCCH--HHHHHHHHHHhCCC
Confidence            9999999999999999999987666665544422 11        3479999999999864321  1222344455555 


Q ss_pred             --cEEEecccCCCcHHHHHHHHHHHH
Q psy8700         149 --HFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       149 --~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                        .++++||++|.|++++|+++.+.+
T Consensus       151 ~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         151 PSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             cccEEEeeccCCCCHHHHHHHHHhhC
Confidence              489999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=7.7e-25  Score=166.60  Aligned_cols=163  Identities=21%  Similarity=0.236  Sum_probs=115.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----ChhhHh---hccccC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----FPAMQR---LSISKG   79 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~---~~~~~~   79 (200)
                      ..|+++|.||||||||+++|+..... ..|..++-......+... ....+.+||+||..+    ...+..   .+++++
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            56899999999999999999875432 122222222222233332 224689999999642    122333   355679


Q ss_pred             CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC
Q psy8700          80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH  159 (200)
Q Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  159 (200)
                      +++++|+|+++.++++.+..|...+.....   ...+.|++||+||+|+.+...........+....+.+++++||+++.
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~---~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~  314 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSP---ELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGE  314 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhh---hcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence            999999999988788898888888877642   23568999999999997654433333333444556799999999999


Q ss_pred             cHHHHHHHHHHHHhc
Q psy8700         160 NVKELFAELLNLEKN  174 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~  174 (200)
                      |+++++++|.+.+.+
T Consensus       315 GI~eL~~~L~~~l~~  329 (335)
T PRK12299        315 GLDELLRALWELLEE  329 (335)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998754

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.93  E-value=1.3e-24  Score=151.38  Aligned_cols=154  Identities=22%  Similarity=0.215  Sum_probs=102.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCC-cccceeEEEEeCCcEEEEEEEeCCCCCCC----h-----hhHhhcccc
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-IEDTYRQVISCNKNICTLQITDTTGSHQF----P-----AMQRLSISK   78 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~-----~~~~~~~~~   78 (200)
                      +|+++|.+|+|||||+++|.+..+.....+. +...  .........+.+.+|||||+...    .     .........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSL--FVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccce--eEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            7999999999999999999987653221111 1111  11112223478999999997421    0     111111223


Q ss_pred             CCEEEEEeeCCChhHH--HHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700          79 GHAFILVYSCTSRQSL--EELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK  156 (200)
Q Consensus        79 ~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  156 (200)
                      +|++++|+|+++..++  .....|+..+....      .+.|+++|+||+|+.+......  ...+....+.+++++||+
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~------~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~  151 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF------KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTL  151 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc------CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEec
Confidence            6899999999987643  44445555554322      3689999999999976544322  334444456789999999


Q ss_pred             CCCcHHHHHHHHHHHH
Q psy8700         157 TNHNVKELFAELLNLE  172 (200)
Q Consensus       157 ~~~~i~~~~~~i~~~~  172 (200)
                      +|.|++++++++.+.+
T Consensus       152 ~~~gi~~l~~~l~~~~  167 (168)
T cd01897         152 TEEGVDEVKNKACELL  167 (168)
T ss_pred             ccCCHHHHHHHHHHHh
Confidence            9999999999998865

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=99.93  E-value=4.5e-24  Score=149.42  Aligned_cols=155  Identities=20%  Similarity=0.291  Sum_probs=115.5

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      +....++|+++|++|||||||++++.+..+. .+.++.+.. ...+...+  ..+.+||+||+..+...+..+++.++++
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~-~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN-IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            3456899999999999999999999986543 234444322 22333333  5789999999988888888899999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC--------CcEEEec
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG--------CHFMETS  154 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~vS  154 (200)
                      ++|+|+.+..++.....++..+.....    ....|+++++||+|+.+....  .+   .....+        .+++++|
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~--~~---i~~~l~~~~~~~~~~~~~~~S  156 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEEEK----LAGVPVLVFANKQDLATAAPA--EE---IAEALNLHDLRDRTWHIQACS  156 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhChh----hcCCCEEEEEECCCCccCCCH--HH---HHHHcCCcccCCCeEEEEEeE
Confidence            999999998888887777766654331    346899999999998653321  11   112222        1478999


Q ss_pred             ccCCCcHHHHHHHHHH
Q psy8700         155 AKTNHNVKELFAELLN  170 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~  170 (200)
                      |++|.|++++|+||.+
T Consensus       157 a~~~~gi~~~~~~l~~  172 (173)
T cd04155         157 AKTGEGLQEGMNWVCK  172 (173)
T ss_pred             CCCCCCHHHHHHHHhc
Confidence            9999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0073|consensus

Probab=99.93  E-value=2.9e-24  Score=142.01  Aligned_cols=164  Identities=19%  Similarity=0.258  Sum_probs=126.9

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +..+++|+++|..||||||++++|.+.. .+...|+.+..... .  .-..+.+.+||.+|+...++.|..||+.+|++|
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ikt-l--~~~~~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKT-L--EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEE-E--EecceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            4569999999999999999999998855 34455555544333 2  234568999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH----HHHHHHHHHhCCcEEEecccCCC
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA----AEGEAEAKMWGCHFMETSAKTNH  159 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~vSa~~~~  159 (200)
                      +|+|.+|+.+++.....+..+..-.    .....|++|++||.|+...-....    .....+.+...++++-||+.+|+
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~ee----rlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge  164 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEE----RLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE  164 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhh----hhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence            9999999999888777776655432    245579999999999974322111    11223335556799999999999


Q ss_pred             cHHHHHHHHHHHHhcc
Q psy8700         160 NVKELFAELLNLEKNR  175 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~~  175 (200)
                      ++.+-++|+.+.+.++
T Consensus       165 ~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  165 DLLEGIDWLCDDLMSR  180 (185)
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            9999999999877653

>KOG0070|consensus

Probab=99.93  E-value=3.6e-25  Score=149.85  Aligned_cols=164  Identities=19%  Similarity=0.280  Sum_probs=131.5

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ...+.+|+++|-.+|||||++.+|..+..... .||.+...+....   .++.+++||.+|+++++.++..|+.+.+++|
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y---kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY---KNISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE---cceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            45689999999999999999999998887555 8888876654332   3678999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH---HHHHHHHHhCCcEEEecccCCCc
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA---EGEAEAKMWGCHFMETSAKTNHN  160 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~vSa~~~~~  160 (200)
                      ||+|.+|++++......+..+....    +....|+++.+||.|+++.......   ............+..++|.+|+|
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~----~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G  165 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEP----ELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG  165 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCc----ccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence            9999999999988877776666555    2567899999999999876543222   22222222334688899999999


Q ss_pred             HHHHHHHHHHHHhcc
Q psy8700         161 VKELFAELLNLEKNR  175 (200)
Q Consensus       161 i~~~~~~i~~~~~~~  175 (200)
                      +.+.++|+.+.+..+
T Consensus       166 L~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  166 LYEGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987543

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=1e-24  Score=156.62  Aligned_cols=156  Identities=20%  Similarity=0.240  Sum_probs=109.3

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCC--cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC--hhh------Hh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCNKNICTLQITDTTGSHQF--PAM------QR   73 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~------~~   73 (200)
                      .++.++|+++|++|||||||++++++..+...  +.++... ....+...+. ..+.+|||||....  ...      ..
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~  115 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDP-TTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL  115 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccc-eeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH
Confidence            45678999999999999999999998763221  2222222 2222333332 37999999997431  111      11


Q ss_pred             hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEe
Q psy8700          74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMET  153 (200)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v  153 (200)
                      ..+..+|++++|+|++++.+......|...+....     ..+.|+++|+||+|+.+.....     ......+.+++++
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~-----~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~  185 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELG-----AEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFI  185 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC-----cCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEE
Confidence            23568999999999999888877766666665543     2458999999999986644321     2333455689999


Q ss_pred             cccCCCcHHHHHHHHHHH
Q psy8700         154 SAKTNHNVKELFAELLNL  171 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~  171 (200)
                      ||+++.|+.+++++|.+.
T Consensus       186 Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         186 SAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             EcCCCCCHHHHHHHHHhh
Confidence            999999999999999764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=8.9e-24  Score=145.25  Aligned_cols=157  Identities=25%  Similarity=0.383  Sum_probs=119.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|.+|||||||++++....+...+.++.+..+ ...+..++..+.+.+||+||+..+..++..++..++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999999886666666555433 33345566558899999999999998888889999999999


Q ss_pred             eeCCCh-hHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          86 YSCTSR-QSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        86 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+... .++.... .+...+.....     ...|+++++||.|+.... ........+......+++++||..+.|+.+
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~  154 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAE-----SNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDS  154 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcc-----cCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHH
Confidence            998776 5555544 44444444442     268999999999997644 233334444445566899999999999999


Q ss_pred             HHHHHH
Q psy8700         164 LFAELL  169 (200)
Q Consensus       164 ~~~~i~  169 (200)
                      ++++|.
T Consensus       155 ~~~~l~  160 (161)
T TIGR00231       155 AFKIVE  160 (161)
T ss_pred             HHHHhh
Confidence            999864

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=1.7e-23  Score=142.65  Aligned_cols=154  Identities=45%  Similarity=0.624  Sum_probs=119.3

Q ss_pred             EECCCCCCHHHHHHHHhhCCC-CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC
Q psy8700          12 VFGAGGVGKSSLVLRFVKGTF-RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS   90 (200)
Q Consensus        12 ~~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~   90 (200)
                      ++|++|+|||||++++.+... .....++.................+.+||+||...+......++..+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999998776 4444455544444555555567899999999988888888889999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-HHHHHHHhCCcEEEecccCCCcHHHHHHHHH
Q psy8700          91 RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-GEAEAKMWGCHFMETSAKTNHNVKELFAELL  169 (200)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~  169 (200)
                      +.+......++.......    .....|+++++||+|+.......... ..........+++++|+..+.|+.+++++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          81 RESFENVKEWLLLILINK----EGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHHHHHHHHHhh----ccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999888888743333333    24679999999999987655433322 3344555667999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=6.8e-24  Score=158.24  Aligned_cols=156  Identities=17%  Similarity=0.142  Sum_probs=105.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCC--CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh-h-------hHhhcccc
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP-A-------MQRLSISK   78 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~-------~~~~~~~~   78 (200)
                      +|+++|.||||||||+|+|++.....  ....++..........+  ..++.+|||||..... .       ....++..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~--~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG--ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC--CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            69999999999999999999976532  22223222222222222  2479999999975431 1       23456788


Q ss_pred             CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccC
Q psy8700          79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKT  157 (200)
Q Consensus        79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~  157 (200)
                      +|++++|+|+++..+..  ..++..+..        ...|+++|+||+|+.+.... ......+....+. +++++||++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~--------~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~  148 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN--------LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALT  148 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh--------cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCC
Confidence            99999999999876543  333333332        34799999999998643322 1222333333444 899999999


Q ss_pred             CCcHHHHHHHHHHHHhccch
Q psy8700         158 NHNVKELFAELLNLEKNRNI  177 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~~~~~~  177 (200)
                      |.|++++++.+.+.+.+...
T Consensus       149 g~gi~~L~~~l~~~l~~~~~  168 (270)
T TIGR00436       149 GDNTSFLAAFIEVHLPEGPF  168 (270)
T ss_pred             CCCHHHHHHHHHHhCCCCCC
Confidence            99999999999998866543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04171 SelB SelB subfamily

Probab=99.92  E-value=8.2e-24  Score=146.68  Aligned_cols=153  Identities=16%  Similarity=0.051  Sum_probs=98.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC---CCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGT---FRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      -|+++|++|||||||+++|.+..   +...+.++.. ..........+ ...+.+|||||++++......++..+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            48999999999999999998632   2222222211 11112222221 3579999999998887777778889999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--HHHHHHHHHH---hCCcEEEecccCCC
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS--AAEGEAEAKM---WGCHFMETSAKTNH  159 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~~vSa~~~~  159 (200)
                      |+|+++.... .....+..+.. .      ...|+++++||+|+.+.....  ..+.......   .+.+++++||+++.
T Consensus        81 V~d~~~~~~~-~~~~~~~~~~~-~------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (164)
T cd04171          81 VVAADEGIMP-QTREHLEILEL-L------GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE  152 (164)
T ss_pred             EEECCCCccH-hHHHHHHHHHH-h------CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence            9999873211 11122222221 1      124899999999997543111  1122222222   35699999999999


Q ss_pred             cHHHHHHHHHH
Q psy8700         160 NVKELFAELLN  170 (200)
Q Consensus       160 ~i~~~~~~i~~  170 (200)
                      |++++++.+..
T Consensus       153 ~v~~l~~~l~~  163 (164)
T cd04171         153 GIEELKEYLDE  163 (164)
T ss_pred             CHHHHHHHHhh
Confidence            99999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=4.3e-23  Score=149.74  Aligned_cols=169  Identities=34%  Similarity=0.457  Sum_probs=129.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|++|||||||+++|..+.+...+.++....+ ..........+.+.+|||+|+++++.++..++..+++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999888888877444 34444444578899999999999999999999999999999


Q ss_pred             eeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc------------cCHHHHHHHHHHh---CCc
Q psy8700          86 YSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE------------VSAAEGEAEAKMW---GCH  149 (200)
Q Consensus        86 ~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------~~~~~~~~~~~~~---~~~  149 (200)
                      +|..+.. +......|...+....     ....|+++++||+|+.....            .............   ...
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~-----~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELA-----PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPA  159 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhC-----CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccc
Confidence            9999944 4555555665666544     24689999999999976532            1111112222222   335


Q ss_pred             EEEeccc--CCCcHHHHHHHHHHHHhccchhHH
Q psy8700         150 FMETSAK--TNHNVKELFAELLNLEKNRNISLQ  180 (200)
Q Consensus       150 ~~~vSa~--~~~~i~~~~~~i~~~~~~~~~~~~  180 (200)
                      ++++|++  .+.++.++|..+.+.+........
T Consensus       160 ~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~~~  192 (219)
T COG1100         160 LLETSAKSLTGPNVNELFKELLRKLLEEIEKLV  192 (219)
T ss_pred             eeEeecccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence            8999999  999999999999998865444333

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=1.8e-23  Score=145.56  Aligned_cols=156  Identities=20%  Similarity=0.226  Sum_probs=105.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeC-CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCN-KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      .|+++|++|+|||||+++|....+.....+....... ..+... .....+.+|||||+..+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            5899999999999999999987765443333222221 122222 13568999999999988888888899999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-HHHHHH------HhCCcEEEecccCCC
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-GEAEAK------MWGCHFMETSAKTNH  159 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~------~~~~~~~~vSa~~~~  159 (200)
                      |+++....... ..+..+..        ...|+++|+||+|+.+........ ...+..      ...++++++|+++|.
T Consensus        82 d~~~~~~~~~~-~~~~~~~~--------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA--------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE  152 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH--------cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence            99875322221 12222222        347999999999986432111111 111110      113589999999999


Q ss_pred             cHHHHHHHHHHHHh
Q psy8700         160 NVKELFAELLNLEK  173 (200)
Q Consensus       160 ~i~~~~~~i~~~~~  173 (200)
                      |+.+++++|.+...
T Consensus       153 gi~~l~~~l~~~~~  166 (168)
T cd01887         153 GIDDLLEAILLLAE  166 (168)
T ss_pred             CHHHHHHHHHHhhh
Confidence            99999999988653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.91  E-value=3.6e-24  Score=145.25  Aligned_cols=134  Identities=21%  Similarity=0.237  Sum_probs=95.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCC-----CChhhHhhccccCCEEE
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH-----QFPAMQRLSISKGHAFI   83 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-----~~~~~~~~~~~~~~~~i   83 (200)
                      ||+++|++|+|||||++++.+...  .+.++.      .+...     ..+|||||..     .+..+.. .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~------~~~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQ------AVEYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--ccccce------eEEEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            899999999999999999988654  222222      11111     2689999973     2333333 478999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVK  162 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~  162 (200)
                      +|+|++++.++.. ..|..    ..      . .|+++|+||+|+.+. .....+...+.+..+. +++++||++|.|++
T Consensus        68 lv~d~~~~~s~~~-~~~~~----~~------~-~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  134 (142)
T TIGR02528        68 LVQSATDPESRFP-PGFAS----IF------V-KPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLE  134 (142)
T ss_pred             EEecCCCCCcCCC-hhHHH----hc------c-CCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHH
Confidence            9999999988655 22221    11      1 399999999998653 2233444555556665 89999999999999


Q ss_pred             HHHHHHH
Q psy8700         163 ELFAELL  169 (200)
Q Consensus       163 ~~~~~i~  169 (200)
                      ++|+++.
T Consensus       135 ~l~~~l~  141 (142)
T TIGR02528       135 ALVDYLN  141 (142)
T ss_pred             HHHHHHh
Confidence            9999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=4.5e-23  Score=156.84  Aligned_cols=160  Identities=21%  Similarity=0.205  Sum_probs=112.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----ChhhHhhc---cccC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----FPAMQRLS---ISKG   79 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~---~~~~   79 (200)
                      ..|+++|.||||||||+++|+..... ..|..++.......+.+++ ...+++||+||..+    ...+...+   +.++
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            57999999999999999999976532 1222222222222333332 35789999999642    22333333   4569


Q ss_pred             CEEEEEeeCCCh---hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700          80 HAFILVYSCTSR---QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK  156 (200)
Q Consensus        80 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  156 (200)
                      +++++|+|+++.   +.++.+..|...+.....   .....|++||+||+|+.+.... ......+....+.+++++||+
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~---~l~~kp~IIV~NK~DL~~~~~~-~~~~~~l~~~~~~~vi~iSAk  312 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP---ELAEKPRIVVLNKIDLLDEEEL-AELLKELKKALGKPVFPISAL  312 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhh---hhccCCEEEEEeCccCCChHHH-HHHHHHHHHHcCCcEEEEEcc
Confidence            999999999976   677888888777766542   2356899999999999765432 223344445557789999999


Q ss_pred             CCCcHHHHHHHHHHHH
Q psy8700         157 TNHNVKELFAELLNLE  172 (200)
Q Consensus       157 ~~~~i~~~~~~i~~~~  172 (200)
                      ++.|+++++++|.+.+
T Consensus       313 tg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       313 TGEGLDELLYALAELL  328 (329)
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            9999999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=1.1e-23  Score=150.92  Aligned_cols=155  Identities=23%  Similarity=0.236  Sum_probs=99.8

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCC-----------CCChhhH
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGS-----------HQFPAMQ   72 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~-----------~~~~~~~   72 (200)
                      +...++|+++|.+|||||||+++|.+..+...+.++.... ......  .  .+.+|||||.           +.++..+
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDW--G--DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEee--c--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            3457899999999999999999999877644444433211 111211  1  5899999993           3444454


Q ss_pred             hhccc----cCCEEEEEeeCCChhHH-H---------HHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH
Q psy8700          73 RLSIS----KGHAFILVYSCTSRQSL-E---------ELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE  138 (200)
Q Consensus        73 ~~~~~----~~~~~i~v~d~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  138 (200)
                      ..++.    .++++++|+|.++...+ .         ....++..+..        .+.|+++|+||+|+.+..   ...
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~p~iiv~NK~Dl~~~~---~~~  149 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--------LGIPPIVAVNKMDKIKNR---DEV  149 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--------cCCCeEEEEECccccCcH---HHH
Confidence            44543    35788888887643211 0         00111222221        348999999999986543   222


Q ss_pred             HHHHHHHhCC---------cEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         139 GEAEAKMWGC---------HFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       139 ~~~~~~~~~~---------~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ...+....+.         +++++||++| |+++++++|.+.+.+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        150 LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            3333444443         5899999999 9999999999977543

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=5.3e-23  Score=157.76  Aligned_cols=154  Identities=19%  Similarity=0.189  Sum_probs=107.4

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCC-C-cCCCcccceeEEEEeCCcEEEEEEEeCCCCCC--ChhhH------hh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-S-YIPTIEDTYRQVISCNKNICTLQITDTTGSHQ--FPAMQ------RL   74 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~------~~   74 (200)
                      +..++|+++|.+|+|||||+|+|++..... . ..+|. +.....+.+.+ ...+.+|||+|..+  ...+.      ..
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~-d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tle  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL-DPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATLE  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc-CCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHHH
Confidence            456999999999999999999999875421 2 22333 33333444432 23789999999732  12211      22


Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS  154 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  154 (200)
                      .+.++|++++|+|++++.+......|...+....     ..+.|+++|+||+|+.+....     ... .....+++++|
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~-----~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iS  333 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELG-----AEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVS  333 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc-----cCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEE
Confidence            4778999999999999988777766665555543     245899999999998653221     111 11224689999


Q ss_pred             ccCCCcHHHHHHHHHHH
Q psy8700         155 AKTNHNVKELFAELLNL  171 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~  171 (200)
                      |++|.|++++++.|.+.
T Consensus       334 Aktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       334 AKTGEGLDLLLEAIAER  350 (351)
T ss_pred             ccCCCCHHHHHHHHHhh
Confidence            99999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=1.4e-23  Score=142.10  Aligned_cols=147  Identities=21%  Similarity=0.295  Sum_probs=99.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCC------hhhHhhcc--cc
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQF------PAMQRLSI--SK   78 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~--~~   78 (200)
                      ++|+++|.||+|||||+|+|++........|... +.....+...+  ..+.++|+||....      ......++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999774322223222 22223444444  58999999995432      23334444  47


Q ss_pred             CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCC
Q psy8700          79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTN  158 (200)
Q Consensus        79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~  158 (200)
                      .|++++|+|+++.+   .-..+...+.+        ...|+++++||+|....... ..+...+.+..++|++.+||+++
T Consensus        79 ~D~ii~VvDa~~l~---r~l~l~~ql~e--------~g~P~vvvlN~~D~a~~~g~-~id~~~Ls~~Lg~pvi~~sa~~~  146 (156)
T PF02421_consen   79 PDLIIVVVDATNLE---RNLYLTLQLLE--------LGIPVVVVLNKMDEAERKGI-EIDAEKLSERLGVPVIPVSARTG  146 (156)
T ss_dssp             SSEEEEEEEGGGHH---HHHHHHHHHHH--------TTSSEEEEEETHHHHHHTTE-EE-HHHHHHHHTS-EEEEBTTTT
T ss_pred             CCEEEEECCCCCHH---HHHHHHHHHHH--------cCCCEEEEEeCHHHHHHcCC-EECHHHHHHHhCCCEEEEEeCCC
Confidence            89999999998753   22233334443        33899999999998765543 23467777889999999999999


Q ss_pred             CcHHHHHHHH
Q psy8700         159 HNVKELFAEL  168 (200)
Q Consensus       159 ~~i~~~~~~i  168 (200)
                      .|++++++.|
T Consensus       147 ~g~~~L~~~I  156 (156)
T PF02421_consen  147 EGIDELKDAI  156 (156)
T ss_dssp             BTHHHHHHHH
T ss_pred             cCHHHHHhhC
Confidence            9999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=1.2e-22  Score=140.09  Aligned_cols=147  Identities=18%  Similarity=0.244  Sum_probs=103.9

Q ss_pred             EECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChh------hHhhccc--cCCEE
Q psy8700          12 VFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPA------MQRLSIS--KGHAF   82 (200)
Q Consensus        12 ~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~--~~~~~   82 (200)
                      ++|.+|+|||||++++.+........+... ......+..++  ..+.+|||||+..+..      +...++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999988754333333322 22233444444  4789999999876543      3555564  89999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|..+++...   .++..+..        ...|+++|+||+|+.+....... ...+....+.+++++||.++.|+.
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~--------~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~  146 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE--------LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGID  146 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH--------cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHH
Confidence            9999998764422   23322322        24799999999999765443322 345566678899999999999999


Q ss_pred             HHHHHHHHHH
Q psy8700         163 ELFAELLNLE  172 (200)
Q Consensus       163 ~~~~~i~~~~  172 (200)
                      ++++++.+..
T Consensus       147 ~l~~~l~~~~  156 (158)
T cd01879         147 ELKDAIAELA  156 (158)
T ss_pred             HHHHHHHHHh
Confidence            9999998763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK15494 era GTPase Era; Provisional

Probab=99.90  E-value=1e-22  Score=156.00  Aligned_cols=158  Identities=16%  Similarity=0.209  Sum_probs=104.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCC--CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC-ChhhH-------hh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ-FPAMQ-------RL   74 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~-------~~   74 (200)
                      ...++|+++|.+|||||||+|+|++..+..  ....++.......+..++  .++.||||||+.. +..+.       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            455799999999999999999999877631  111111122223333443  4789999999753 22222       12


Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC--CcEE
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG--CHFM  151 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~  151 (200)
                      .+..+|++++|+|..+.  +..... ++..+..        ...|.++|+||+|+.+.   ...+........+  ..++
T Consensus       128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~--------~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~  194 (339)
T PRK15494        128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRS--------LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLF  194 (339)
T ss_pred             HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh--------cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEE
Confidence            46789999999997653  334333 3333322        22577899999998643   1223333333333  4799


Q ss_pred             EecccCCCcHHHHHHHHHHHHhccch
Q psy8700         152 ETSAKTNHNVKELFAELLNLEKNRNI  177 (200)
Q Consensus       152 ~vSa~~~~~i~~~~~~i~~~~~~~~~  177 (200)
                      ++||++|.|++++++++.+.+.+...
T Consensus       195 ~iSAktg~gv~eL~~~L~~~l~~~~~  220 (339)
T PRK15494        195 PISALSGKNIDGLLEYITSKAKISPW  220 (339)
T ss_pred             EEeccCccCHHHHHHHHHHhCCCCCC
Confidence            99999999999999999998876553

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=7.1e-23  Score=163.48  Aligned_cols=163  Identities=21%  Similarity=0.236  Sum_probs=110.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----------ChhhH
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----------FPAMQ   72 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~~   72 (200)
                      ...++|+++|.+|||||||+|+|++....  ..+..++.+.....+..++.  .+.+|||||..+          +..+.
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence            35689999999999999999999987532  22222333333444555555  567999999532          22222


Q ss_pred             -hhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH--HH-HHHHHHhCC
Q psy8700          73 -RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA--EG-EAEAKMWGC  148 (200)
Q Consensus        73 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~~-~~~~~~~~~  148 (200)
                       ..++.++|++++|+|++++.+..... ++..+..        ...|++||+||+|+.+.......  +. ..+.....+
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~  357 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWA  357 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCC
Confidence             23578999999999999988777753 3333332        34799999999999753221111  11 111222346


Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHhccchh
Q psy8700         149 HFMETSAKTNHNVKELFAELLNLEKNRNIS  178 (200)
Q Consensus       149 ~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~  178 (200)
                      +++++||++|.|++++|+.+.+.+......
T Consensus       358 ~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~  387 (472)
T PRK03003        358 PRVNISAKTGRAVDKLVPALETALESWDTR  387 (472)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence            899999999999999999999988655543

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=1.4e-22  Score=139.42  Aligned_cols=145  Identities=26%  Similarity=0.297  Sum_probs=104.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChh--------hHhhccc
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPA--------MQRLSIS   77 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~   77 (200)
                      ++|+++|++|+|||||++++.+....  .....+...........+  ...+.+|||||......        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            68999999999999999999986531  122222222222333333  35789999999765432        2334667


Q ss_pred             cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC
Q psy8700          78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT  157 (200)
Q Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  157 (200)
                      .+|++++|+|++++.+......+..           ....|+++|+||+|+.+....       .....+.+++++||++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~-----------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~  141 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL-----------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKT  141 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh-----------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCC
Confidence            8999999999998776666444332           245899999999998765433       2334567999999999


Q ss_pred             CCcHHHHHHHHHHHH
Q psy8700         158 NHNVKELFAELLNLE  172 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~  172 (200)
                      +.|+.+++++|.+.+
T Consensus       142 ~~~v~~l~~~l~~~~  156 (157)
T cd04164         142 GEGLDELKEALLELA  156 (157)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=8.9e-23  Score=143.09  Aligned_cols=159  Identities=21%  Similarity=0.226  Sum_probs=105.1

Q ss_pred             EECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC----hh---hHhhccccCCEEE
Q psy8700          12 VFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF----PA---MQRLSISKGHAFI   83 (200)
Q Consensus        12 ~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~---~~~~~~~~~~~~i   83 (200)
                      ++|++|||||||+++|.+.... ..+..++.......+... ....+.+|||||....    ..   .....+..+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            5899999999999999987541 222222222222223333 1347899999996321    11   2234567899999


Q ss_pred             EEeeCCCh------hHHHHHHHHHHHHHHHhCC--CCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700          84 LVYSCTSR------QSLEELRPIWEVIRETKGG--ANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSA  155 (200)
Q Consensus        84 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  155 (200)
                      +|+|+.+.      .++.....|...+......  .......|+++|+||+|+..................+.+++++||
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999988      5677777776666543310  000135899999999999765543332222333445668999999


Q ss_pred             cCCCcHHHHHHHHHHH
Q psy8700         156 KTNHNVKELFAELLNL  171 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~  171 (200)
                      +++.|++++++++.+.
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01894 EngA1 EngA1 subfamily

Probab=99.90  E-value=1.7e-22  Score=139.02  Aligned_cols=145  Identities=21%  Similarity=0.257  Sum_probs=98.7

Q ss_pred             EEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChh--------hHhhccccCC
Q psy8700          11 VVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPA--------MQRLSISKGH   80 (200)
Q Consensus        11 ~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~~   80 (200)
                      +++|.+|+|||||+++|++...  .....++...........++  ..+.+|||||...+..        .....+..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            4799999999999999998642  22222222222223333333  5799999999887543        3345677899


Q ss_pred             EEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCC
Q psy8700          81 AFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNH  159 (200)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~  159 (200)
                      ++++|+|..++.+.... .+...+..        ...|+++|+||+|+.+....     .......+. +++++|++++.
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~--------~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~  144 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK--------SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGR  144 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh--------cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCC
Confidence            99999999876543332 22222322        23899999999998764432     122233455 88999999999


Q ss_pred             cHHHHHHHHHHH
Q psy8700         160 NVKELFAELLNL  171 (200)
Q Consensus       160 ~i~~~~~~i~~~  171 (200)
                      |+.++++++.+.
T Consensus       145 gv~~l~~~l~~~  156 (157)
T cd01894         145 GIGDLLDAILEL  156 (157)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.90  E-value=2.8e-22  Score=157.86  Aligned_cols=151  Identities=21%  Similarity=0.203  Sum_probs=107.9

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh--------Hhhc
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM--------QRLS   75 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~   75 (200)
                      ..+||+++|++|+|||||+|+|++...  ...+..++.+.....+..++  ..+.+|||||+......        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            468999999999999999999998642  23333333333344455554  46789999998654322        2457


Q ss_pred             cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700          76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSA  155 (200)
Q Consensus        76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  155 (200)
                      +.++|++++|+|++++.+....  |+..+..        ...|+++|+||+|+... +     ...+....+.+++.+||
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--------~~~piIlV~NK~Dl~~~-~-----~~~~~~~~~~~~~~vSa  343 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK--------SKKPFILVLNKIDLKIN-S-----LEFFVSSKVLNSSNLSA  343 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh--------CCCCEEEEEECccCCCc-c-----hhhhhhhcCCceEEEEE
Confidence            7899999999999988776654  4433321        34799999999998643 1     12334556778999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcc
Q psy8700         156 KTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ++ .||.++|+.+.+.+.+.
T Consensus       344 k~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       344 KQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             ec-CCHHHHHHHHHHHHHHH
Confidence            97 68999999888877543

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>KOG0075|consensus

Probab=99.90  E-value=1.1e-23  Score=136.74  Aligned_cols=158  Identities=22%  Similarity=0.287  Sum_probs=128.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +..+.++|-.+||||||+|....+.+.+.-.|+.+...+..   ....+.+.+||.||+..+++.+..|++.++++++++
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~---tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V   96 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV---TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV   96 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe---ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence            46789999999999999999988888778888887766553   445678999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH-----HHHhCCcEEEecccCCCcH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE-----AKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~vSa~~~~~i  161 (200)
                      |+.+++.....+..+..+.....    ...+|++|++||.|+++.-.  .......     .....+..|.+|+++..||
T Consensus        97 Daad~~k~~~sr~EL~~LL~k~~----l~gip~LVLGnK~d~~~AL~--~~~li~rmgL~sitdREvcC~siScke~~Ni  170 (186)
T KOG0075|consen   97 DAADPDKLEASRSELHDLLDKPS----LTGIPLLVLGNKIDLPGALS--KIALIERMGLSSITDREVCCFSISCKEKVNI  170 (186)
T ss_pred             ecCCcccchhhHHHHHHHhcchh----hcCCcEEEecccccCccccc--HHHHHHHhCccccccceEEEEEEEEcCCccH
Confidence            99999888887777777776663    67899999999999876432  2222211     1222346899999999999


Q ss_pred             HHHHHHHHHHHh
Q psy8700         162 KELFAELLNLEK  173 (200)
Q Consensus       162 ~~~~~~i~~~~~  173 (200)
                      +-+.+|+++...
T Consensus       171 d~~~~Wli~hsk  182 (186)
T KOG0075|consen  171 DITLDWLIEHSK  182 (186)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998654

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.89  E-value=3.7e-22  Score=142.24  Aligned_cols=146  Identities=20%  Similarity=0.174  Sum_probs=97.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh--CCCCCCcC------------CCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhH
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK--GTFRESYI------------PTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQ   72 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~   72 (200)
                      -+|+++|.+++|||||+++|+.  +.+...+.            ++.+.+. .....++.....+.+|||||++++....
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4799999999999999999997  44433321            0111111 1223344456789999999999999999


Q ss_pred             hhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc-CHHHHHHHHH-------
Q psy8700          73 RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV-SAAEGEAEAK-------  144 (200)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------  144 (200)
                      ..+++.+|++++|+|+++.. ......++..+..        ...|+++++||+|+...... ...+...+..       
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  153 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--------LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEE  153 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--------cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence            99999999999999998742 2222333332222        34799999999998653321 1122222221       


Q ss_pred             HhCCcEEEecccCCCcHH
Q psy8700         145 MWGCHFMETSAKTNHNVK  162 (200)
Q Consensus       145 ~~~~~~~~vSa~~~~~i~  162 (200)
                      ..+++++++||++|.|+.
T Consensus       154 ~~~~~iv~~Sa~~g~~~~  171 (194)
T cd01891         154 QLDFPVLYASAKNGWASL  171 (194)
T ss_pred             cCccCEEEeehhcccccc
Confidence            236789999999997753

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.89  E-value=3.4e-22  Score=158.23  Aligned_cols=148  Identities=25%  Similarity=0.294  Sum_probs=107.6

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh--------Hhhc
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM--------QRLS   75 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~   75 (200)
                      ..++|+++|.+|+|||||+|+|++...  ...+..++.+.....+..++  ..+.+|||||...+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            458999999999999999999998653  22222333333344444544  46899999998654332        2346


Q ss_pred             cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700          76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSA  155 (200)
Q Consensus        76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  155 (200)
                      +.++|++++|+|++++.+......|..           ..+.|+++|+||+|+.+.....        ...+.+++++||
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~-----------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSA  352 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE-----------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISA  352 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh-----------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEe
Confidence            788999999999998877665433221           1447999999999996543221        334568999999


Q ss_pred             cCCCcHHHHHHHHHHHHhc
Q psy8700         156 KTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~~~~  174 (200)
                      ++|.|++++++++.+.+..
T Consensus       353 ktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        353 KTGEGIDELREAIKELAFG  371 (449)
T ss_pred             eCCCCHHHHHHHHHHHHhh
Confidence            9999999999999998754

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=5e-22  Score=140.78  Aligned_cols=156  Identities=21%  Similarity=0.203  Sum_probs=106.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCc-------------cc-cee-EEEEeCCcEEEEEEEeCCCCCCChhhHh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-------------ED-TYR-QVISCNKNICTLQITDTTGSHQFPAMQR   73 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~-------------~~-~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~   73 (200)
                      +|+++|.+|||||||+++|.+...........             .. +.. .....+.....+.+|||||...+.....
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            48999999999999999998876543322211             00 111 1112222346899999999998888888


Q ss_pred             hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH--HHHHHHHH------
Q psy8700          74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA--EGEAEAKM------  145 (200)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~~~~~~~~------  145 (200)
                      .++..+|++++|+|..++..... ..++..+..        ...|+++++||+|+.........  ......+.      
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE--------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIST  151 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccch
Confidence            89999999999999987654333 233322222        34899999999999763322211  11111111      


Q ss_pred             --------hCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         146 --------WGCHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       146 --------~~~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                              ...+++++||+.|.|+.++++++.+.+.
T Consensus       152 ~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         152 KEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             hhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                    3468999999999999999999998763

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04163 Era Era subfamily

Probab=99.89  E-value=7.8e-22  Score=136.81  Aligned_cols=156  Identities=21%  Similarity=0.191  Sum_probs=100.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChh--------hHhhcccc
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPA--------MQRLSISK   78 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~   78 (200)
                      ..+|+++|++|+|||||++++.+...........................+.+|||||......        .....+..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~   82 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD   82 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999865422111111111111122233456899999999765432        23345778


Q ss_pred             CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHh-CCcEEEecccC
Q psy8700          79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW-GCHFMETSAKT  157 (200)
Q Consensus        79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~  157 (200)
                      +|++++|+|.+++.. .....+...+..        .+.|+++++||+|+....+........+.... ..+++++|+++
T Consensus        83 ~d~i~~v~d~~~~~~-~~~~~~~~~~~~--------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  153 (168)
T cd04163          83 VDLVLFVVDASEPIG-EGDEFILELLKK--------SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALK  153 (168)
T ss_pred             CCEEEEEEECCCccC-chHHHHHHHHHH--------hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEecc
Confidence            999999999998722 111222222322        23799999999999743322222223333333 35899999999


Q ss_pred             CCcHHHHHHHHHHH
Q psy8700         158 NHNVKELFAELLNL  171 (200)
Q Consensus       158 ~~~i~~~~~~i~~~  171 (200)
                      +.|+.++++.|.+.
T Consensus       154 ~~~~~~l~~~l~~~  167 (168)
T cd04163         154 GENVDELLEEIVKY  167 (168)
T ss_pred             CCChHHHHHHHHhh
Confidence            99999999999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=9e-22  Score=156.15  Aligned_cols=161  Identities=21%  Similarity=0.235  Sum_probs=107.8

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh-----------
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM-----------   71 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----------   71 (200)
                      ...++|+++|.+|+|||||+|+|++...  ...+..++.+.....+..++.  .+.+|||||..+....           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            3468999999999999999999998652  122222322333334444444  7899999997543321           


Q ss_pred             HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH----HhC
Q psy8700          72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK----MWG  147 (200)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~  147 (200)
                      ...++..+|++++|+|++++.+..+.. ++..+..        ...|+++|+||+|+.+..+...........    ..+
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~--------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  318 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE--------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDF  318 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCC
Confidence            134678899999999999887766543 3333322        337999999999997211111111111111    124


Q ss_pred             CcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         148 CHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       148 ~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      ++++++||++|.|+.++|+++.+.+....
T Consensus       319 ~~vi~~SA~~g~~v~~l~~~i~~~~~~~~  347 (429)
T TIGR03594       319 APIVFISALTGQGVDKLLDAIDEVYENAN  347 (429)
T ss_pred             CceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999876544

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.6e-21  Score=152.08  Aligned_cols=161  Identities=19%  Similarity=0.188  Sum_probs=110.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----ChhhHhhc---cccC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----FPAMQRLS---ISKG   79 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~---~~~~   79 (200)
                      ..|+++|.||||||||+++|++..... .|..++-......+..+ ....+.+||+||...    ...+...+   ++++
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            379999999999999999999865321 11111111111122222 134799999999642    22344444   4568


Q ss_pred             CEEEEEeeCCCh---hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700          80 HAFILVYSCTSR---QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK  156 (200)
Q Consensus        80 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  156 (200)
                      +++++|+|+++.   +.+.++..|...+.....   .....|++||+||+|+.+.    ......+....+.+++++||+
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~---~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~  310 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP---RLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISAL  310 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhch---hccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCC
Confidence            999999999864   567777777777776542   2356899999999998432    223344455556789999999


Q ss_pred             CCCcHHHHHHHHHHHHhccc
Q psy8700         157 TNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       157 ~~~~i~~~~~~i~~~~~~~~  176 (200)
                      ++.|+++++++|.+.+.+..
T Consensus       311 tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        311 TGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             CCCCHHHHHHHHHHHHHhCc
Confidence            99999999999999886543

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.89  E-value=1.9e-22  Score=132.72  Aligned_cols=116  Identities=35%  Similarity=0.515  Sum_probs=86.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      ||+|+|++|||||||+++|.+..+.  ....+..+..+ ............+.+||++|.+.+...+..++.++|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998875  12222233222 23445566666799999999988877777779999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      ||++++.++..+..+...+.....   ...+.|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~---~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRK---RDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHH---HSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHc---cCCCCCEEEEEeccC
Confidence            999999999998777555555442   135699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=7.3e-22  Score=157.70  Aligned_cols=155  Identities=21%  Similarity=0.262  Sum_probs=105.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCC--------ChhhHh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQ--------FPAMQR   73 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~   73 (200)
                      .....+|+++|.+|||||||+|+|++.... ....+... +.........+.  .+.+|||||.+.        +.....
T Consensus        35 ~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~  112 (472)
T PRK03003         35 GGPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAE  112 (472)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHH
Confidence            345689999999999999999999986532 11222221 122223333343  688999999763        233455


Q ss_pred             hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEE
Q psy8700          74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFME  152 (200)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  152 (200)
                      .++..+|++++|+|++++.+... ..+...+..        ...|+++|+||+|+....   ......+  ..+. .+++
T Consensus       113 ~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--------~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~  178 (472)
T PRK03003        113 VAMRTADAVLFVVDATVGATATD-EAVARVLRR--------SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHP  178 (472)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--------cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEE
Confidence            67889999999999998765443 334443432        348999999999986422   1111122  2343 4579


Q ss_pred             ecccCCCcHHHHHHHHHHHHhc
Q psy8700         153 TSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       153 vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      +||++|.|+.++|+++.+.+.+
T Consensus       179 iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        179 VSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             EEcCCCCCcHHHHHHHHhhccc
Confidence            9999999999999999998754

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=1.4e-21  Score=139.40  Aligned_cols=161  Identities=17%  Similarity=0.144  Sum_probs=103.9

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCC----------CChhhH
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH----------QFPAMQ   72 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~   72 (200)
                      ..+..++|+++|.+|+|||||++++++..+...+.++.+.+.......  ....+.+|||||..          .+..+.
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            356779999999999999999999998764444444443332222111  12579999999953          223344


Q ss_pred             hhcccc---CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH--HHHHHHHHhC
Q psy8700          73 RLSISK---GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA--EGEAEAKMWG  147 (200)
Q Consensus        73 ~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~~~~~~~~~~  147 (200)
                      ..++..   .+++++++|..++...... .++..+..        ...|+++++||+|+.+..+....  ..........
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~--------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~  168 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE--------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD  168 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH--------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC
Confidence            444544   3678888887765433221 12222221        34789999999998764432221  1222222235


Q ss_pred             CcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         148 CHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       148 ~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      .+++++||+++.|++++++.|.+.+++
T Consensus       169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        169 DEVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            789999999999999999999887754

>PRK11058 GTPase HflX; Provisional

Probab=99.88  E-value=2.7e-21  Score=151.54  Aligned_cols=157  Identities=20%  Similarity=0.188  Sum_probs=107.7

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCC--cCCCcccceeEEEEeCCcEEEEEEEeCCCCCC--ChhhHhh------c
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCNKNICTLQITDTTGSHQ--FPAMQRL------S   75 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~~------~   75 (200)
                      ...+|+++|.+|||||||+|+|++......  ...|. +.....+...+. ..+.+|||+|..+  ...++..      .
T Consensus       196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTl-d~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~  273 (426)
T PRK11058        196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATL-DPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQE  273 (426)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCc-CCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHH
Confidence            346899999999999999999998654221  12222 222223333332 2578999999743  2333332      3


Q ss_pred             cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCc-EEEec
Q psy8700          76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCH-FMETS  154 (200)
Q Consensus        76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~vS  154 (200)
                      +..+|++++|+|++++.+...+..+...+....     ..+.|+++|+||+|+.+... ...   . ....+.+ ++.+|
T Consensus       274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~-----~~~~pvIiV~NKiDL~~~~~-~~~---~-~~~~~~~~~v~IS  343 (426)
T PRK11058        274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEID-----AHEIPTLLVMNKIDMLDDFE-PRI---D-RDEENKPIRVWLS  343 (426)
T ss_pred             hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhc-----cCCCCEEEEEEcccCCCchh-HHH---H-HHhcCCCceEEEe
Confidence            578999999999999988777766666555544     24689999999999864321 111   1 1123454 58899


Q ss_pred             ccCCCcHHHHHHHHHHHHhc
Q psy8700         155 AKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~~~  174 (200)
                      |++|.|+++++++|.+.+..
T Consensus       344 AktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        344 AQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             CCCCCCHHHHHHHHHHHhhh
Confidence            99999999999999998753

>PRK00089 era GTPase Era; Reviewed

Probab=99.88  E-value=1.6e-21  Score=147.28  Aligned_cols=160  Identities=20%  Similarity=0.210  Sum_probs=103.9

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCC--cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh--------hhHhhc
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP--------AMQRLS   75 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~   75 (200)
                      ....|+++|++|||||||+|+|++......  ...++.........  ....++.+|||||.....        ......
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~--~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT--EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE--cCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            356799999999999999999998765321  11111111111222  223689999999976532        223346


Q ss_pred             cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC-CcEEEec
Q psy8700          76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG-CHFMETS  154 (200)
Q Consensus        76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vS  154 (200)
                      +..+|++++|+|+++.... .....+..+.        ..+.|+++|+||+|+.............+....+ .+++++|
T Consensus        82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~--------~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iS  152 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIGP-GDEFILEKLK--------KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPIS  152 (292)
T ss_pred             HhcCCEEEEEEeCCCCCCh-hHHHHHHHHh--------hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEec
Confidence            6789999999999883221 1122222222        1347999999999997432222222333333333 5899999


Q ss_pred             ccCCCcHHHHHHHHHHHHhccc
Q psy8700         155 AKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      |+++.|+.++++++.+.+.+..
T Consensus       153 A~~~~gv~~L~~~L~~~l~~~~  174 (292)
T PRK00089        153 ALKGDNVDELLDVIAKYLPEGP  174 (292)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCC
Confidence            9999999999999999876543

>KOG0071|consensus

Probab=99.88  E-value=3.9e-22  Score=128.64  Aligned_cols=161  Identities=19%  Similarity=0.254  Sum_probs=124.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      +++++|+++|-.++||||++.+|..... ....||.++..+..   .-+++.+.+||.+|++..+.+|++|+....++||
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetV---tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETV---TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEE---EeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            5689999999999999999999987553 45566666554432   2346789999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-HHHHHH--HhCCcEEEecccCCCcH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-GEAEAK--MWGCHFMETSAKTNHNV  161 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~--~~~~~~~~vSa~~~~~i  161 (200)
                      |+|..+.+.++..+..+..+....    +..+.|++|.+||.|+++.+...+.. ..++..  .....+.++++.+|+++
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~----em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL  166 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDR----EMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGL  166 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCH----hhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhH
Confidence            999999888777766665555444    46788999999999998765332211 111222  22346788999999999


Q ss_pred             HHHHHHHHHHHh
Q psy8700         162 KELFAELLNLEK  173 (200)
Q Consensus       162 ~~~~~~i~~~~~  173 (200)
                      .+-|.|+.+.+.
T Consensus       167 ~eglswlsnn~~  178 (180)
T KOG0071|consen  167 KEGLSWLSNNLK  178 (180)
T ss_pred             HHHHHHHHhhcc
Confidence            999999998764

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=2.7e-21  Score=149.95  Aligned_cols=163  Identities=19%  Similarity=0.186  Sum_probs=110.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh-------hhHhhccccCC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP-------AMQRLSISKGH   80 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~~   80 (200)
                      .|+|+|.||||||||+|+|++..... .+..|+-......+...+ ...+.|+||||.....       ......+..++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            79999999999999999999755311 122222222222333322 2358999999965321       11223577899


Q ss_pred             EEEEEeeCC---ChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC--CcEEEecc
Q psy8700          81 AFILVYSCT---SRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG--CHFMETSA  155 (200)
Q Consensus        81 ~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~vSa  155 (200)
                      ++++|+|++   +.+.+..+..|...+.....   .....|++||+||+|+.+..+.. .....+....+  .+++.+||
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~---~L~~kP~IlVlNKiDl~~~~el~-~~l~~l~~~~~~~~~Vi~ISA  315 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSP---KLAEKPRWLVFNKIDLLDEEEAE-ERAKAIVEALGWEGPVYLISA  315 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhh---hhcCCCEEEEEeCCccCChHHHH-HHHHHHHHHhCCCCCEEEEEC
Confidence            999999988   45567777777777766542   23458999999999997544321 22233333333  37899999


Q ss_pred             cCCCcHHHHHHHHHHHHhccc
Q psy8700         156 KTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      +++.|+.++++.|.+.+.+..
T Consensus       316 ~tg~GIdeLl~~I~~~L~~~~  336 (390)
T PRK12298        316 ASGLGVKELCWDLMTFIEENP  336 (390)
T ss_pred             CCCcCHHHHHHHHHHHhhhCc
Confidence            999999999999999886543

>KOG3883|consensus

Probab=99.88  E-value=9.9e-21  Score=123.98  Aligned_cols=166  Identities=27%  Similarity=0.339  Sum_probs=142.9

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC--CCCCcCCCcccceeEEEEeC-CcEEEEEEEeCCCCCCC-hhhHhhccccCCE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGT--FRESYIPTIEDTYRQVISCN-KNICTLQITDTTGSHQF-PAMQRLSISKGHA   81 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~-~~~~~~~~~~~~~   81 (200)
                      ...|+++.|..++|||+++..++.++  ....+.||+++++...+..+ +..-++.++||.|...+ ..+-.+|++-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            46799999999999999999998655  34567888888887766554 33358999999997766 7788899999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      +++|++..+++||+.+..+...+....    +....|++|++||.|+.++.+....-+..+++.-.+..+++++.+...+
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~K----dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL  163 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHK----DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSL  163 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhcc----ccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence            999999999999999998888888766    4678999999999999999998888889999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q psy8700         162 KELFAELLNLEKNR  175 (200)
Q Consensus       162 ~~~~~~i~~~~~~~  175 (200)
                      -+-|-.+...+...
T Consensus       164 ~epf~~l~~rl~~p  177 (198)
T KOG3883|consen  164 YEPFTYLASRLHQP  177 (198)
T ss_pred             hhHHHHHHHhccCC
Confidence            99999888876443

>cd01895 EngA2 EngA2 subfamily

Probab=99.88  E-value=3.7e-21  Score=134.35  Aligned_cols=154  Identities=22%  Similarity=0.241  Sum_probs=100.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh-----------hhHh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP-----------AMQR   73 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~~~   73 (200)
                      .++|+++|.+|+|||||++++++....  .....+...........++.  .+.+|||||.....           ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            689999999999999999999886532  11111221222233333443  57899999965431           1112


Q ss_pred             hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-HHHHHHHh----CC
Q psy8700          74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-GEAEAKMW----GC  148 (200)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~----~~  148 (200)
                      ..+..+|++++|+|..++.+.... .++..+..        ...|+++++||+|+.+........ ........    ..
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  150 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE--------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYA  150 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCC
Confidence            356689999999999988765443 22222221        347999999999987653211111 12222222    36


Q ss_pred             cEEEecccCCCcHHHHHHHHHHH
Q psy8700         149 HFMETSAKTNHNVKELFAELLNL  171 (200)
Q Consensus       149 ~~~~vSa~~~~~i~~~~~~i~~~  171 (200)
                      +++++||+++.|+.++++.+.+.
T Consensus       151 ~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         151 PIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ceEEEeccCCCCHHHHHHHHHHh
Confidence            89999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=2.7e-21  Score=152.61  Aligned_cols=166  Identities=21%  Similarity=0.251  Sum_probs=108.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----ChhhH---hhccccC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----FPAMQ---RLSISKG   79 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~---~~~~~~~   79 (200)
                      ..|+|+|.||||||||+|+|++..... .|..++-......+...+  ..+.+||+||...    ...+.   ...+.++
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            679999999999999999999754321 122222122222333333  5799999999642    11222   2245679


Q ss_pred             CEEEEEeeCCC----hhHHHHHHHHHHHHHHHhCCC------CCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCc
Q psy8700          80 HAFILVYSCTS----RQSLEELRPIWEVIRETKGGA------NELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCH  149 (200)
Q Consensus        80 ~~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~~------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  149 (200)
                      +++++|+|+++    ++.+.++..+...+..+....      ......|++||+||+|+.+..+...... ......+++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~-~~l~~~g~~  316 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVR-PELEARGWP  316 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHH-HHHHHcCCe
Confidence            99999999975    234556666555555443100      0134689999999999975443222211 122334679


Q ss_pred             EEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         150 FMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       150 ~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      ++++||+++.|+++++++|.+.+....
T Consensus       317 Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        317 VFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999999999886544

>COG1159 Era GTPase [General function prediction only]

Probab=99.88  E-value=1.5e-21  Score=142.19  Aligned_cols=164  Identities=20%  Similarity=0.205  Sum_probs=111.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEE--EeCCcEEEEEEEeCCCCCCCh--------hhHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVI--SCNKNICTLQITDTTGSHQFP--------AMQRL   74 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~G~~~~~--------~~~~~   74 (200)
                      -...-|+++|.||+|||||+|++++.+.  ...+..+.+++..+  .......++.|+||||.....        .....
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            3456799999999999999999999876  33333343333211  122335699999999966543        23344


Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC-CcEEEe
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG-CHFMET  153 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~v  153 (200)
                      .+..+|+++||+|++++....+ ...++.+..        .+.|+++++||+|...+..........+..... ..++++
T Consensus        82 sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~--------~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpi  152 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGPGD-EFILEQLKK--------TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPI  152 (298)
T ss_pred             HhccCcEEEEEEeccccCCccH-HHHHHHHhh--------cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEe
Confidence            5667899999999987543322 222233332        237999999999988766521222222222333 389999


Q ss_pred             cccCCCcHHHHHHHHHHHHhccchhH
Q psy8700         154 SAKTNHNVKELFAELLNLEKNRNISL  179 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~~~~~~~~  179 (200)
                      ||+.|.|++.+.+.+...+.+...-.
T Consensus       153 SA~~g~n~~~L~~~i~~~Lpeg~~~y  178 (298)
T COG1159         153 SALKGDNVDTLLEIIKEYLPEGPWYY  178 (298)
T ss_pred             eccccCCHHHHHHHHHHhCCCCCCcC
Confidence            99999999999999999987665433

>cd01889 SelB_euk SelB subfamily

Probab=99.88  E-value=2.4e-21  Score=137.87  Aligned_cols=157  Identities=19%  Similarity=0.130  Sum_probs=98.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC----CCCCCcC-----CCcccce-eEEEE----------eCCcEEEEEEEeCCCCCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG----TFRESYI-----PTIEDTY-RQVIS----------CNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~----~~~~~~~-----~~~~~~~-~~~~~----------~~~~~~~~~~~D~~G~~~   67 (200)
                      ++|+++|++++|||||+++|+..    .+...+.     .+....+ ...+.          ..+....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    1111111     1111111 11111          123357899999999865


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH--HHHH-HHHH
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA--AEGE-AEAK  144 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~-~~~~  144 (200)
                      +..........+|++++|+|+.+.........+.  +...       ...|+++++||+|+........  .+.. .+..
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~  151 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-------LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQK  151 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence            4333333455679999999998754333322222  1111       2369999999999864332111  1111 1111


Q ss_pred             ------HhCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         145 ------MWGCHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       145 ------~~~~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                            ..+++++++||++|.|+.++++.+.+.+.
T Consensus       152 ~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         152 TLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             HHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence                  13568999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=2.2e-21  Score=133.63  Aligned_cols=141  Identities=20%  Similarity=0.142  Sum_probs=95.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh----hhHhhccccCCEEEE
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP----AMQRLSISKGHAFIL   84 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~~~~~~~~~~~~~i~   84 (200)
                      +|+++|.+|+|||||+|+|.+...  ...++      ..+.....    .+|||||.....    ......+..+|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT--LARKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc--cCccc------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            799999999999999999876431  11111      11122222    269999973222    222234678999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC--cEEEecccCCCcHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC--HFMETSAKTNHNVK  162 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~vSa~~~~~i~  162 (200)
                      |+|+++..++..  .|.   ....      ...|+++++||+|+.+..   ......+....+.  +++++||++|.|+.
T Consensus        71 v~d~~~~~s~~~--~~~---~~~~------~~~~ii~v~nK~Dl~~~~---~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~  136 (158)
T PRK15467         71 VHGANDPESRLP--AGL---LDIG------VSKRQIAVISKTDMPDAD---VAATRKLLLETGFEEPIFELNSHDPQSVQ  136 (158)
T ss_pred             EEeCCCcccccC--HHH---Hhcc------CCCCeEEEEEccccCccc---HHHHHHHHHHcCCCCCEEEEECCCccCHH
Confidence            999998866422  222   2211      347899999999986522   2333444555554  89999999999999


Q ss_pred             HHHHHHHHHHhcc
Q psy8700         163 ELFAELLNLEKNR  175 (200)
Q Consensus       163 ~~~~~i~~~~~~~  175 (200)
                      ++|+.+.+.+.+.
T Consensus       137 ~l~~~l~~~~~~~  149 (158)
T PRK15467        137 QLVDYLASLTKQE  149 (158)
T ss_pred             HHHHHHHHhchhh
Confidence            9999998877443

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.87  E-value=6.4e-21  Score=155.11  Aligned_cols=157  Identities=18%  Similarity=0.230  Sum_probs=113.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC-------CCCCcCCCc------cccee-EEEEe-----CCcEEEEEEEeCCCCCCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGT-------FRESYIPTI------EDTYR-QVISC-----NKNICTLQITDTTGSHQF   68 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~-------~~~~~~~~~------~~~~~-~~~~~-----~~~~~~~~~~D~~G~~~~   68 (200)
                      -+|+++|.+++|||||+++|+...       +...+..+.      +-+.. ..+.+     ++..+.+.||||||+..+
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            479999999999999999998642       122222221      11111 11111     466789999999999999


Q ss_pred             hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC
Q psy8700          69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC  148 (200)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  148 (200)
                      ......++..+|++++|+|++++.+.+....|+....         .+.|+++|+||+|+.+...  ......+....++
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---------~~ipiIiViNKiDl~~~~~--~~~~~el~~~lg~  152 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---------NDLEIIPVINKIDLPSADP--ERVKKEIEEVIGL  152 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---------cCCCEEEEEECcCCCccCH--HHHHHHHHHHhCC
Confidence            9999999999999999999998776666665554332         2379999999999864321  1222334444555


Q ss_pred             ---cEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         149 ---HFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       149 ---~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                         .++++||++|.|+.++|+.|.+.+...
T Consensus       153 ~~~~vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       153 DASEAILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             CcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence               489999999999999999999987543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=2.5e-21  Score=136.28  Aligned_cols=148  Identities=17%  Similarity=0.173  Sum_probs=94.3

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE-EEEeCCcEEEEEEEeCCCCCC----------Chhh
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISCNKNICTLQITDTTGSHQ----------FPAM   71 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~G~~~----------~~~~   71 (200)
                      ++...++|+++|++|+|||||+|++.+..+...+.++.+.+... ....++   .+.+|||||...          +..+
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            46788999999999999999999999875333333333333222 222232   689999999532          2333


Q ss_pred             Hhhccc---cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--HHHHHHHHHHh
Q psy8700          72 QRLSIS---KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS--AAEGEAEAKMW  146 (200)
Q Consensus        72 ~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~  146 (200)
                      ...++.   .++++++|+|.+++-+.... .++..+..        ...|+++++||+|+....+..  ..+........
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~--------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~  161 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE--------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD  161 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH--------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence            334544   35799999999875544443 22333322        347999999999987543221  12222223333


Q ss_pred             C--CcEEEecccCCCcHH
Q psy8700         147 G--CHFMETSAKTNHNVK  162 (200)
Q Consensus       147 ~--~~~~~vSa~~~~~i~  162 (200)
                      +  .+++++||++|.|++
T Consensus       162 ~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       162 ADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             cCCCceEEEECCCCCCCC
Confidence            2  489999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.87  E-value=6.1e-21  Score=136.76  Aligned_cols=113  Identities=12%  Similarity=0.069  Sum_probs=77.1

Q ss_pred             EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc
Q psy8700          55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV  134 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  134 (200)
                      ..+.||||||++.+.......+..+|++++|+|++++.........+..+.. .      ...|++|++||+|+.+....
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~------~~~~iiivvNK~Dl~~~~~~  155 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-M------GLKHIIIVQNKIDLVKEEQA  155 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-c------CCCcEEEEEEchhccCHHHH
Confidence            6799999999888777777778889999999999874211122222322322 2      22479999999999753321


Q ss_pred             CH--HHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         135 SA--AEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       135 ~~--~~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      ..  .....+...   .+++++++||++|.|++++++.+.+.+.+
T Consensus       156 ~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         156 LENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            11  111222222   25689999999999999999999886644

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=1.4e-20  Score=156.81  Aligned_cols=160  Identities=19%  Similarity=0.236  Sum_probs=109.1

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----------Chhh-
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----------FPAM-   71 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~-   71 (200)
                      +..++|+++|.+|||||||+|+|++...  ...+.+++.+.....+..++.  .+.+|||||..+          +..+ 
T Consensus       448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r  525 (712)
T PRK09518        448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR  525 (712)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence            3568999999999999999999998763  233333333444444455555  567999999642          1111 


Q ss_pred             HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH----hC
Q psy8700          72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM----WG  147 (200)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~  147 (200)
                      ....+..+|++++|+|++++.+..... ++..+..        ...|+++|+||+|+.+........ ......    ..
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~--------~~~piIiV~NK~DL~~~~~~~~~~-~~~~~~l~~~~~  595 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVD--------AGRALVLVFNKWDLMDEFRRQRLE-RLWKTEFDRVTW  595 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--------cCCCEEEEEEchhcCChhHHHHHH-HHHHHhccCCCC
Confidence            123467899999999999987777654 3333332        337999999999997533211111 111111    23


Q ss_pred             CcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         148 CHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       148 ~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      .+++.+||++|.|+.++++.+.+.+.+..
T Consensus       596 ~~ii~iSAktg~gv~~L~~~i~~~~~~~~  624 (712)
T PRK09518        596 ARRVNLSAKTGWHTNRLAPAMQEALESWD  624 (712)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            47899999999999999999999887643

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=2.6e-20  Score=148.00  Aligned_cols=149  Identities=19%  Similarity=0.215  Sum_probs=101.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC--------ChhhHhhccc
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ--------FPAMQRLSIS   77 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~   77 (200)
                      .+|+++|.+|||||||+|+|.+...  ...+...+.+........++  ..+.+|||||...        .......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            5899999999999999999998653  12222222222333344444  5899999999876        2334455778


Q ss_pred             cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEeccc
Q psy8700          78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAK  156 (200)
Q Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~  156 (200)
                      .+|++++|+|..++.+.... .....+..        ...|+++|+||+|+.+..    .....+ ...++ .++++||+
T Consensus        80 ~ad~il~vvd~~~~~~~~~~-~~~~~l~~--------~~~piilv~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~  145 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADE-EIAKILRK--------SNKPVILVVNKVDGPDEE----ADAYEF-YSLGLGEPYPISAE  145 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHH-HHHHHHHH--------cCCcEEEEEECccCccch----hhHHHH-HhcCCCCCEEEEee
Confidence            99999999999875433321 12222332        237999999999965421    112222 34455 58999999


Q ss_pred             CCCcHHHHHHHHHHHH
Q psy8700         157 TNHNVKELFAELLNLE  172 (200)
Q Consensus       157 ~~~~i~~~~~~i~~~~  172 (200)
                      +|.|+.++++.+....
T Consensus       146 ~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        146 HGRGIGDLLDAILEEL  161 (435)
T ss_pred             CCCCHHHHHHHHHhhC
Confidence            9999999999998833

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.86  E-value=2.6e-20  Score=133.32  Aligned_cols=121  Identities=14%  Similarity=0.257  Sum_probs=89.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccC-CEEEEEee
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG-HAFILVYS   87 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~-~~~i~v~d   87 (200)
                      +|+++|++|||||||+++|..+.+...+.++.+..........+....+.+||+||+.+++.....++..+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999987766554443322222222223456799999999999988888899998 99999999


Q ss_pred             CCCh-hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700          88 CTSR-QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN  131 (200)
Q Consensus        88 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  131 (200)
                      ..+. .++.....++..+......  ..+..|++|++||.|+...
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~--~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEK--VKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhh--ccCCCCEEEEecchhhccc
Confidence            9987 6677766666554332210  1256899999999998643

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.86  E-value=4.6e-20  Score=149.51  Aligned_cols=156  Identities=21%  Similarity=0.256  Sum_probs=106.5

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ....+|+++|.+++|||||+++|.+..+...+.+...... ...+..++. ..+.||||||++.+..++...+..+|+++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            3568999999999999999999998776554443333222 222333222 27899999999999999988899999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH-HHHHH---HHHHhC--CcEEEecccC
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA-AEGEA---EAKMWG--CHFMETSAKT  157 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~---~~~~~~--~~~~~vSa~~  157 (200)
                      +|+|+++....+.... +..+.        ..+.|+++++||+|+.+...... .....   ....++  .+++++||++
T Consensus       164 LVVda~dgv~~qT~e~-i~~~~--------~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt  234 (587)
T TIGR00487       164 LVVAADDGVMPQTIEA-ISHAK--------AANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALT  234 (587)
T ss_pred             EEEECCCCCCHhHHHH-HHHHH--------HcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence            9999987543233222 22221        24489999999999865321000 01100   111222  4799999999


Q ss_pred             CCcHHHHHHHHHH
Q psy8700         158 NHNVKELFAELLN  170 (200)
Q Consensus       158 ~~~i~~~~~~i~~  170 (200)
                      |.|+.++++++..
T Consensus       235 GeGI~eLl~~I~~  247 (587)
T TIGR00487       235 GDGIDELLDMILL  247 (587)
T ss_pred             CCChHHHHHhhhh
Confidence            9999999999875

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd00880 Era_like Era (E

Probab=99.85  E-value=1.6e-20  Score=129.18  Aligned_cols=150  Identities=23%  Similarity=0.265  Sum_probs=102.1

Q ss_pred             EECCCCCCHHHHHHHHhhCCCC-C-CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh-------hhHhhccccCCEE
Q psy8700          12 VFGAGGVGKSSLVLRFVKGTFR-E-SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP-------AMQRLSISKGHAF   82 (200)
Q Consensus        12 ~~G~~~~GKSsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~~~~   82 (200)
                      ++|++|||||||++++.+.... . ...++............ ....+.+||+||.....       .....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999876542 1 12222222223332222 14579999999976543       3444578899999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH---HHHHHHHHhCCcEEEecccCCC
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA---EGEAEAKMWGCHFMETSAKTNH  159 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~vSa~~~~  159 (200)
                      ++++|..+........ +.....        ....|+++|+||+|+.........   .........+.+++++|+.++.
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~--------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  150 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR--------ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGE  150 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH--------hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccC
Confidence            9999999887666654 222222        245899999999998765433222   1122333456799999999999


Q ss_pred             cHHHHHHHHHHH
Q psy8700         160 NVKELFAELLNL  171 (200)
Q Consensus       160 ~i~~~~~~i~~~  171 (200)
                      |+.++++++.+.
T Consensus       151 ~v~~l~~~l~~~  162 (163)
T cd00880         151 GIDELREALIEA  162 (163)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999874

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=1.9e-20  Score=148.73  Aligned_cols=161  Identities=20%  Similarity=0.208  Sum_probs=105.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCC-CCCcCC-CcccceeEEEEeCCcEEEEEEEeCCCCCCChh-----------h
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF-RESYIP-TIEDTYRQVISCNKNICTLQITDTTGSHQFPA-----------M   71 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----------~   71 (200)
                      ...++|+++|.+|+|||||+|+|++... .....+ ++..........++  ..+.+|||||......           .
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            4579999999999999999999997542 111111 11122222223333  4688999999643221           1


Q ss_pred             HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH---HHHHHHHhCC
Q psy8700          72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE---GEAEAKMWGC  148 (200)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~  148 (200)
                      ...++..+|++++|+|++++.+..+. .++..+..        ...|+++++||+|+.+........   ...+.....+
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~--------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~  319 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALE--------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYA  319 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH--------cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCC
Confidence            12367789999999999988766554 33333332        237999999999997432211111   1111122346


Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         149 HFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       149 ~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      +++++||++|.|+.++++.+.+.+....
T Consensus       320 ~i~~~SA~~~~gv~~l~~~i~~~~~~~~  347 (435)
T PRK00093        320 PIVFISALTGQGVDKLLEAIDEAYENAN  347 (435)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence            9999999999999999999988776543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=3.6e-20  Score=147.02  Aligned_cols=150  Identities=20%  Similarity=0.260  Sum_probs=103.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC--------ChhhHhhcccc
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ--------FPAMQRLSISK   78 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~   78 (200)
                      +|+++|.+|||||||+|+|.+...  ...+...+.+........++.  .+.+|||||...        +......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998653  112222222222333334444  699999999642        23455667889


Q ss_pred             CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccC
Q psy8700          79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKT  157 (200)
Q Consensus        79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~  157 (200)
                      +|++++|+|..++.+... ..+...+.+        ...|+++|+||+|+.+....    ... ....++ +++++||.+
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~--------~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~  144 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRK--------SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEH  144 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH--------hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCc
Confidence            999999999987544333 223333333        23799999999998654321    112 234566 899999999


Q ss_pred             CCcHHHHHHHHHHHHhc
Q psy8700         158 NHNVKELFAELLNLEKN  174 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~~~  174 (200)
                      |.|+.++++.+.+.+.+
T Consensus       145 g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       145 GRGIGDLLDAILELLPE  161 (429)
T ss_pred             CCChHHHHHHHHHhcCc
Confidence            99999999999988754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.85  E-value=3e-20  Score=152.81  Aligned_cols=159  Identities=19%  Similarity=0.283  Sum_probs=110.1

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc---cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE---DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA   81 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   81 (200)
                      .....|+++|.+++|||||+++|....+.....+...   ..+......++....+.||||||++.|..++..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            3567999999999999999999988665433332222   1222223333456789999999999999999999999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH-HHHHH---HHHHhC--CcEEEecc
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA-AEGEA---EAKMWG--CHFMETSA  155 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~---~~~~~~--~~~~~vSa  155 (200)
                      +++|+|++++...+.... +..+.        ....|++|++||+|+.+...... .....   ....++  ++++++||
T Consensus       322 aILVVDA~dGv~~QT~E~-I~~~k--------~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSA  392 (742)
T CHL00189        322 AILIIAADDGVKPQTIEA-INYIQ--------AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISA  392 (742)
T ss_pred             EEEEEECcCCCChhhHHH-HHHHH--------hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence            999999987543333222 22221        24489999999999865321100 01111   112233  58999999


Q ss_pred             cCCCcHHHHHHHHHHHH
Q psy8700         156 KTNHNVKELFAELLNLE  172 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~~  172 (200)
                      ++|.|+.++++.+....
T Consensus       393 ktG~GIdeLle~I~~l~  409 (742)
T CHL00189        393 SQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCCHHHHHHhhhhhh
Confidence            99999999999998764

>KOG0076|consensus

Probab=99.85  E-value=3e-21  Score=129.04  Aligned_cols=163  Identities=23%  Similarity=0.303  Sum_probs=122.0

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC---CCC----cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhcccc
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTF---RES----YIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISK   78 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   78 (200)
                      ..+-++++|..+||||||+.++.....   ...    ..++.+ -...++.+.  ...+.+||.+|++..++++..|+..
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg-Lnig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG-LNIGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc-eeecceeec--cceeEEEEcCChHHHHHHHHHHHHH
Confidence            457899999999999999998865321   111    111111 111122333  4488999999999999999999999


Q ss_pred             CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH-HHH---hCCcEEEec
Q psy8700          79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE-AKM---WGCHFMETS  154 (200)
Q Consensus        79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~---~~~~~~~vS  154 (200)
                      ++++|+++|+++++.++.....+..+...-    .....|+++.+||.|+.+..+..+.....- +..   ..+++.+||
T Consensus        93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E----~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvS  168 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEESKTAFEKVVENE----KLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVS  168 (197)
T ss_pred             hceeEEeecCCCHHHHHHHHHHHHHHHHHH----HhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccch
Confidence            999999999999999999888887776665    367899999999999987665443332111 122   235899999


Q ss_pred             ccCCCcHHHHHHHHHHHHhcc
Q psy8700         155 AKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~~~~  175 (200)
                      |..|.||++-.+|+...+...
T Consensus       169 al~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  169 ALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhcccHHHHHHHHHHHHhhc
Confidence            999999999999999988654

>KOG1673|consensus

Probab=99.85  E-value=1.4e-20  Score=123.61  Aligned_cols=162  Identities=23%  Similarity=0.391  Sum_probs=136.5

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      ++||.++|++..|||||+-++.++.+.+.+..+.+ ....+++...+..+.+.+||.+|++++....+....++-+++|.
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm   99 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM   99 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence            58999999999999999999999998877777777 55567888899999999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc-----cccCHHHHHHHHHHhCCcEEEecccCCCc
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN-----REVSAAEGEAEAKMWGCHFMETSAKTNHN  160 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~vSa~~~~~  160 (200)
                      ||++.+.++..+..|+.......+     ..+| ++|++|.|+.=.     .+.....+..+++..+++.|.+|+..+-|
T Consensus       100 FDLt~r~TLnSi~~WY~QAr~~Nk-----tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN  173 (205)
T KOG1673|consen  100 FDLTRRSTLNSIKEWYRQARGLNK-----TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN  173 (205)
T ss_pred             EecCchHHHHHHHHHHHHHhccCC-----ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence            999999999999999988777663     3344 678999996321     11122345667888899999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q psy8700         161 VKELFAELLNLEKN  174 (200)
Q Consensus       161 i~~~~~~i~~~~~~  174 (200)
                      +.++|+.+...+..
T Consensus       174 v~KIFK~vlAklFn  187 (205)
T KOG1673|consen  174 VQKIFKIVLAKLFN  187 (205)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999998887754

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=4.5e-20  Score=141.50  Aligned_cols=148  Identities=21%  Similarity=0.256  Sum_probs=104.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE----EEEeCCcEEEEEEEeCCCCCCC---------hhhHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ----VISCNKNICTLQITDTTGSHQF---------PAMQRL   74 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~   74 (200)
                      ..|+++|.||+|||||+|||++...  ......++.++.    .....+.  .+.++||+|.+..         ..+...
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~   79 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALI   79 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHH
Confidence            5799999999999999999999764  444444444433    3333333  5999999997742         235556


Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEe
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMET  153 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v  153 (200)
                      .+..||+++||+|...+-+-.+ ......+..        .+.|+++|+||+|...     ..........+|+ .++.+
T Consensus        80 Ai~eADvilfvVD~~~Git~~D-~~ia~~Lr~--------~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~I  145 (444)
T COG1160          80 AIEEADVILFVVDGREGITPAD-EEIAKILRR--------SKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPI  145 (444)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHh--------cCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEe
Confidence            7778999999999987544333 233333332        3389999999999642     1122222334455 89999


Q ss_pred             cccCCCcHHHHHHHHHHHHh
Q psy8700         154 SAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~~  173 (200)
                      ||.+|.|+.++++.+...+.
T Consensus       146 SA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         146 SAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             ehhhccCHHHHHHHHHhhcC
Confidence            99999999999999999873

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.84  E-value=2.9e-20  Score=131.77  Aligned_cols=158  Identities=22%  Similarity=0.200  Sum_probs=105.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC--CCCc---------CCC-----cccce-eEEEEeC--CcEEEEEEEeCCCCCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTF--RESY---------IPT-----IEDTY-RQVISCN--KNICTLQITDTTGSHQ   67 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~---------~~~-----~~~~~-~~~~~~~--~~~~~~~~~D~~G~~~   67 (200)
                      ..+|+++|+.++|||||+.+|+...-  ....         ...     ...+. .......  .....+.++||||+..
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~   82 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED   82 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence            57899999999999999999985331  1100         000     00001 1122222  4557999999999988


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH--HHHHHHHHH
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA--AEGEAEAKM  145 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~  145 (200)
                      +.......+..+|++++|+|+.++..... ...+..+..        .+.|++|++||+|+....-...  .....+.+.
T Consensus        83 f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~--------~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~  153 (188)
T PF00009_consen   83 FIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE--------LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKE  153 (188)
T ss_dssp             HHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH--------TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHH
T ss_pred             eeecccceecccccceeeeeccccccccc-ccccccccc--------cccceEEeeeeccchhhhHHHHHHHHHHHhccc
Confidence            88888888999999999999987644333 344444444        3378999999999973221111  111122222


Q ss_pred             h------CCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         146 W------GCHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       146 ~------~~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      .      .++++++||++|.|+.++++.+.+.++
T Consensus       154 ~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  154 YGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            2      247999999999999999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.84  E-value=3.3e-19  Score=130.09  Aligned_cols=154  Identities=19%  Similarity=0.151  Sum_probs=98.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh-------hhHhhccccC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP-------AMQRLSISKG   79 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~   79 (200)
                      .+++++|++|+|||||+++|.+..... .+..++.......+..++  ..+++||+||..+..       .....+++++
T Consensus         1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a   78 (233)
T cd01896           1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA   78 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence            379999999999999999999865321 222222222233333443  589999999975322       2344578899


Q ss_pred             CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCC-----------------------------------------------
Q psy8700          80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGAN-----------------------------------------------  112 (200)
Q Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------  112 (200)
                      |++++|+|++++..  ........+....-..+                                               
T Consensus        79 d~il~V~D~t~~~~--~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~  156 (233)
T cd01896          79 DLILMVLDATKPEG--HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVL  156 (233)
T ss_pred             CEEEEEecCCcchh--HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEE
Confidence            99999999987653  22222222221110000                                               


Q ss_pred             ----------------CCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         113 ----------------ELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       113 ----------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                                      .....|+++|+||+|+.+..+     ...+..  ...++++||+++.|++++|+.+++.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~-----~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         157 IREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE-----LDLLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             EccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH-----HHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                            012359999999999864322     222322  34689999999999999999999865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.84  E-value=7.5e-20  Score=148.96  Aligned_cols=145  Identities=19%  Similarity=0.220  Sum_probs=100.8

Q ss_pred             CCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhh------Hhhcc--ccCCEEEE
Q psy8700          14 GAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAM------QRLSI--SKGHAFIL   84 (200)
Q Consensus        14 G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~--~~~~~~i~   84 (200)
                      |.+|+|||||+|++.+........+... +.....+..++  ..+++|||||+.++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998765333333322 22222333444  36899999998775432      33333  36899999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|.++.+..   ..+...+.+        .+.|+++++||+|+.+..... .+...+.+..+++++++||++|.|++++
T Consensus        79 VvDat~ler~---l~l~~ql~~--------~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL  146 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLLE--------LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERL  146 (591)
T ss_pred             EecCCcchhh---HHHHHHHHh--------cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHH
Confidence            9999875321   222222222        348999999999986655433 3456677788999999999999999999


Q ss_pred             HHHHHHHH
Q psy8700         165 FAELLNLE  172 (200)
Q Consensus       165 ~~~i~~~~  172 (200)
                      ++.+.+..
T Consensus       147 ~~~i~~~~  154 (591)
T TIGR00437       147 KDAIRKAI  154 (591)
T ss_pred             HHHHHHHh
Confidence            99998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.84  E-value=1.2e-19  Score=147.70  Aligned_cols=156  Identities=19%  Similarity=0.170  Sum_probs=105.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC---CCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGT---FRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +.|+++|.+++|||||+++|.+..   +.+.+.++..... ...+..++  ..+.+||+||++.+.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999998633   2222222222111 12233333  68999999999988888888899999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccC--HHHHHHHHHHh----CCcEEEeccc
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVS--AAEGEAEAKMW----GCHFMETSAK  156 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~----~~~~~~vSa~  156 (200)
                      +|+|++++...+. ...+..+..        ...| ++|++||+|+.+.....  ..+...+....    +++++++||+
T Consensus        79 LVVDa~~G~~~qT-~ehl~il~~--------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~  149 (581)
T TIGR00475        79 LVVDADEGVMTQT-GEHLAVLDL--------LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK  149 (581)
T ss_pred             EEEECCCCCcHHH-HHHHHHHHH--------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence            9999998422222 122222222        2256 99999999997644321  12223333332    4789999999


Q ss_pred             CCCcHHHHHHHHHHHHhc
Q psy8700         157 TNHNVKELFAELLNLEKN  174 (200)
Q Consensus       157 ~~~~i~~~~~~i~~~~~~  174 (200)
                      +|.|++++++.+...+..
T Consensus       150 tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       150 TGQGIGELKKELKNLLES  167 (581)
T ss_pred             CCCCchhHHHHHHHHHHh
Confidence            999999999999877644

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.84  E-value=2.8e-19  Score=148.88  Aligned_cols=152  Identities=14%  Similarity=0.150  Sum_probs=108.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChh----------hHhhc
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPA----------MQRLS   75 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~   75 (200)
                      .++|+++|.||||||||+|+|.+....  ..+..+.+. .....+......+.+|||||..++..          ....+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            579999999999999999999886542  222222222 22333444556899999999776532          12223


Q ss_pred             c--ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEe
Q psy8700          76 I--SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMET  153 (200)
Q Consensus        76 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v  153 (200)
                      +  ..+|++++|+|.++.++.   ..++..+.+        ...|+++++||+|+.+.+.. ..+...+.+..+++++++
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e--------~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpi  148 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLE--------LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPL  148 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHH--------cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEE
Confidence            2  478999999999886442   234444443        23899999999998755443 344566777889999999


Q ss_pred             cccCCCcHHHHHHHHHHHH
Q psy8700         154 SAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~  172 (200)
                      |+.++.|++++++.+.+..
T Consensus       149 SA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        149 VSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EeecCCCHHHHHHHHHHhh
Confidence            9999999999999998765

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.84  E-value=2.3e-19  Score=148.82  Aligned_cols=156  Identities=22%  Similarity=0.268  Sum_probs=107.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      .....|+++|..++|||||+++|....+.....+.+.... ...+..++  ..+.||||||+..|..++...+..+|+++
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            4668899999999999999999987665443333222111 12233333  57999999999999999988899999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH-HHHH---HHHHHhC--CcEEEecccC
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA-AEGE---AEAKMWG--CHFMETSAKT  157 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~---~~~~~~~--~~~~~vSa~~  157 (200)
                      +|+|+++...-+.... +..+.        ....|++|++||+|+.+...... .+..   .+...++  ++++++||++
T Consensus       366 LVVdAddGv~~qT~e~-i~~a~--------~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt  436 (787)
T PRK05306        366 LVVAADDGVMPQTIEA-INHAK--------AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKT  436 (787)
T ss_pred             EEEECCCCCCHhHHHH-HHHHH--------hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence            9999988533222222 22222        24489999999999965321000 0111   1122233  6899999999


Q ss_pred             CCcHHHHHHHHHHH
Q psy8700         158 NHNVKELFAELLNL  171 (200)
Q Consensus       158 ~~~i~~~~~~i~~~  171 (200)
                      |.|++++|++|...
T Consensus       437 G~GI~eLle~I~~~  450 (787)
T PRK05306        437 GEGIDELLEAILLQ  450 (787)
T ss_pred             CCCchHHHHhhhhh
Confidence            99999999998763

>KOG1423|consensus

Probab=99.83  E-value=8.1e-20  Score=132.95  Aligned_cols=166  Identities=20%  Similarity=0.207  Sum_probs=109.2

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh------------h
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP------------A   70 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------------~   70 (200)
                      +.+..+.|+++|.||+|||||.|.+++.+..+..........+.........+++.|+||||.....            .
T Consensus        68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            3566799999999999999999999998875544443333334433344455799999999944211            1


Q ss_pred             hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc-------------ccCHH
Q psy8700          71 MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR-------------EVSAA  137 (200)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~~~~~  137 (200)
                      --...+.+||.+++++|+++....-. ...+.++..+       ...|-++|+||.|...++             +....
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y-------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~  219 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY-------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL  219 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH-------hcCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence            22335567999999999997433222 2233334443       348899999999976542             11111


Q ss_pred             HHHHHHHHhC---------------C-cEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         138 EGEAEAKMWG---------------C-HFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       138 ~~~~~~~~~~---------------~-~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      ......+...               + .+|.+||+.|.||+++-+++...+....
T Consensus       220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp  274 (379)
T KOG1423|consen  220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP  274 (379)
T ss_pred             hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence            1111111111               1 4899999999999999999998776543

>KOG0072|consensus

Probab=99.83  E-value=1.2e-20  Score=122.35  Aligned_cols=164  Identities=20%  Similarity=0.219  Sum_probs=122.0

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ++.+.+|+++|-.|+||||+..++.-++.. ...|+.++.....   .-++..+++||.+|+.+.+..|+.|+.+.|++|
T Consensus        15 ~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~v---~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   15 PEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVETV---PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             CccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcccc---ccccccceeeEccCcccccHHHHHHhcccceEE
Confidence            347899999999999999998888765543 3455555444332   225678999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC---HHHHHHHHHHhCCcEEEecccCCCc
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS---AAEGEAEAKMWGCHFMETSAKTNHN  160 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~vSa~~~~~  160 (200)
                      +|+|.+|.+.+......+-.+....    +......+|++||.|........   ..+.....+..-..++++||..|.|
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~----eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~G  166 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEE----ELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEG  166 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccH----hhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccC
Confidence            9999999988776655554443322    24557788999999986543221   1222222233336899999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q psy8700         161 VKELFAELLNLEKNR  175 (200)
Q Consensus       161 i~~~~~~i~~~~~~~  175 (200)
                      +++.++|+.+.+.++
T Consensus       167 ld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  167 LDPAMDWLQRPLKSR  181 (182)
T ss_pred             CcHHHHHHHHHHhcc
Confidence            999999999988654

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.83  E-value=3.3e-19  Score=148.70  Aligned_cols=153  Identities=22%  Similarity=0.241  Sum_probs=100.4

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEE--eCCcEEEEEEEeCCCCCC--------ChhhHhhc
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVIS--CNKNICTLQITDTTGSHQ--------FPAMQRLS   75 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~~--------~~~~~~~~   75 (200)
                      ...+|+++|.+|+|||||+|+|++...  ......++.++....  ..-....+.+|||||.+.        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~--~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRRE--AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            457899999999999999999998653  111222222222121  111234789999999763        22344557


Q ss_pred             cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEec
Q psy8700          76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETS  154 (200)
Q Consensus        76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vS  154 (200)
                      +..+|++++|+|+++.-.... ..+...+..        .+.|+++|+||+|+.....    ....+. ..+. ..+++|
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--------~~~pvIlV~NK~D~~~~~~----~~~~~~-~lg~~~~~~iS  417 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR--------AGKPVVLAVNKIDDQASEY----DAAEFW-KLGLGEPYPIS  417 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--------cCCCEEEEEECcccccchh----hHHHHH-HcCCCCeEEEE
Confidence            789999999999986432221 233333332        3489999999999854321    111211 2233 567999


Q ss_pred             ccCCCcHHHHHHHHHHHHhc
Q psy8700         155 AKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~~~  174 (200)
                      |++|.|+.++++++.+.+..
T Consensus       418 A~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        418 AMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCCCCchHHHHHHHHhccc
Confidence            99999999999999998754

>KOG0074|consensus

Probab=99.82  E-value=1.4e-19  Score=117.16  Aligned_cols=164  Identities=16%  Similarity=0.184  Sum_probs=124.7

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA   81 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   81 (200)
                      ++...++||+++|-.++|||||+..|.+... ....|+.++...+...  ...+.+.+||.+|+...+..|..|+.+.|+
T Consensus        12 s~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~v~~--~g~f~LnvwDiGGqr~IRpyWsNYyenvd~   88 (185)
T KOG0074|consen   12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKKVEY--DGTFHLNVWDIGGQRGIRPYWSNYYENVDG   88 (185)
T ss_pred             CCCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEEEee--cCcEEEEEEecCCccccchhhhhhhhccce
Confidence            3467899999999999999999999987553 4556666655544322  345789999999999999999999999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHH---HHHHhCCcEEEecccCC
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEA---EAKMWGCHFMETSAKTN  158 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~vSa~~~  158 (200)
                      +|||+|.+|...++.+...+-.+.+--    .....|+.|..||.|+.-...........   ........+.++|+..+
T Consensus        89 lIyVIDS~D~krfeE~~~el~ELleee----Kl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~  164 (185)
T KOG0074|consen   89 LIYVIDSTDEKRFEEISEELVELLEEE----KLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSL  164 (185)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHHhhhh----hhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccc
Confidence            999999999988888777666665544    35779999999999987655433221111   11222347889999999


Q ss_pred             CcHHHHHHHHHHHH
Q psy8700         159 HNVKELFAELLNLE  172 (200)
Q Consensus       159 ~~i~~~~~~i~~~~  172 (200)
                      .|+..-.+|+....
T Consensus       165 eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  165 EGSTDGSDWVQSNP  178 (185)
T ss_pred             cCccCcchhhhcCC
Confidence            99988888876643

>KOG0096|consensus

Probab=99.82  E-value=5.6e-20  Score=124.66  Aligned_cols=160  Identities=23%  Similarity=0.355  Sum_probs=136.9

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCc-EEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKN-ICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ..++++++|+.|.||||++++.+.+.+..+|.++.+-.........+. .+.+..|||.|++.+..+...++-.+.+.++
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            479999999999999999999999999999999998666554444333 4899999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      .||++...++.++..|...+.+..      .++|+++.+||.|..+..  .......+....++.||++||+.+.|...-
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~------~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekP  160 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVR------ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERP  160 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHh------cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccc
Confidence            999999999999999999999887      559999999999975543  122334455567789999999999999999


Q ss_pred             HHHHHHHHh
Q psy8700         165 FAELLNLEK  173 (200)
Q Consensus       165 ~~~i~~~~~  173 (200)
                      |-|+.+.+.
T Consensus       161 Fl~LarKl~  169 (216)
T KOG0096|consen  161 FLWLARKLT  169 (216)
T ss_pred             hHHHhhhhc
Confidence            999988764

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.82  E-value=7.7e-19  Score=143.20  Aligned_cols=162  Identities=19%  Similarity=0.205  Sum_probs=112.3

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCC--CCC-----CcCCCc------ccce-eEEEE-----eCCcEEEEEEEeCC
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE-----SYIPTI------EDTY-RQVIS-----CNKNICTLQITDTT   63 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~-----~~~~~~------~~~~-~~~~~-----~~~~~~~~~~~D~~   63 (200)
                      ...+.-+++++|..++|||||+.+|+...  ...     .+..+.      +-+. ...+.     .++..+.+.+||||
T Consensus         3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP   82 (600)
T PRK05433          3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP   82 (600)
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC
Confidence            33456689999999999999999998632  111     111110      1111 11111     15567899999999


Q ss_pred             CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH
Q psy8700          64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA  143 (200)
Q Consensus        64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  143 (200)
                      |+.++...+..++..+|++++|+|++++...+....|... ..        .+.|+++|+||+|+.+...  ......+.
T Consensus        83 Gh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~-~~--------~~lpiIvViNKiDl~~a~~--~~v~~ei~  151 (600)
T PRK05433         83 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE--------NDLEIIPVLNKIDLPAADP--ERVKQEIE  151 (600)
T ss_pred             CcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH--------CCCCEEEEEECCCCCcccH--HHHHHHHH
Confidence            9999998899999999999999999987655554444322 11        3479999999999864321  11123333


Q ss_pred             HHhCC---cEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         144 KMWGC---HFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       144 ~~~~~---~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ...++   .++++||++|.|+.+++++|.+.+...
T Consensus       152 ~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        152 DVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             HHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence            44555   389999999999999999999987643

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.82  E-value=4.6e-19  Score=136.37  Aligned_cols=153  Identities=25%  Similarity=0.285  Sum_probs=110.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEE--EeCCcEEEEEEEeCCCCCCChh--------hHhhc
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVI--SCNKNICTLQITDTTGSHQFPA--------MQRLS   75 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~G~~~~~~--------~~~~~   75 (200)
                      ..+|++++|.||+|||||+|+|++..-  ..+...+++++..+  .++-..+.+.+.||+|.-+...        .....
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            468999999999999999999998653  55556666665422  2333446899999999665432        33346


Q ss_pred             cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700          76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSA  155 (200)
Q Consensus        76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  155 (200)
                      ++.||.+++|+|.+.+..-.+...+.     ..     ..+.|+++|.||.|+.........     ....+.+++.+|+
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~~~~-----~~-----~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa  358 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLALIE-----LL-----PKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISA  358 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHHHHH-----hc-----ccCCCEEEEEechhcccccccchh-----hccCCCceEEEEe
Confidence            77899999999999863333322222     11     366899999999999876542211     2233457999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcc
Q psy8700         156 KTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~~~~~  175 (200)
                      +++.|++.+.+.|.+.+...
T Consensus       359 ~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         359 KTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             cCccCHHHHHHHHHHHHhhc
Confidence            99999999999999988655

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=1.4e-18  Score=133.42  Aligned_cols=161  Identities=22%  Similarity=0.247  Sum_probs=111.6

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE----EEEeCCcEEEEEEEeCCCCCCChh-----------
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ----VISCNKNICTLQITDTTGSHQFPA-----------   70 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D~~G~~~~~~-----------   70 (200)
                      ..+||+++|.||+|||||+|+|++..  .......+++++.    .+..++.  .+.++||+|.-+...           
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgee--R~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~  252 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEE--RVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVA  252 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCc--eEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeeh
Confidence            56999999999999999999999854  2344444444443    3333444  799999999543221           


Q ss_pred             hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH-----HHHHH
Q psy8700          71 MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE-----AEAKM  145 (200)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~~~  145 (200)
                      -....+..++.+++|+|++.+-+.++. .....+.+        ...+++||+||+|+.+..+.......     .+...
T Consensus       253 rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~--------~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l  323 (444)
T COG1160         253 RTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEE--------AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL  323 (444)
T ss_pred             hhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH--------cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc
Confidence            223355678999999999998765553 33333333        33799999999999876332222221     11222


Q ss_pred             hCCcEEEecccCCCcHHHHHHHHHHHHhccchhH
Q psy8700         146 WGCHFMETSAKTNHNVKELFAELLNLEKNRNISL  179 (200)
Q Consensus       146 ~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~  179 (200)
                      ...+++.+||++|.++.++|+.+...+......+
T Consensus       324 ~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri  357 (444)
T COG1160         324 DFAPIVFISALTGQGLDKLFEAIKEIYECATRRI  357 (444)
T ss_pred             cCCeEEEEEecCCCChHHHHHHHHHHHHHhcccc
Confidence            3458999999999999999999999887665443

>KOG4423|consensus

Probab=99.81  E-value=1.3e-21  Score=132.20  Aligned_cols=173  Identities=27%  Similarity=0.377  Sum_probs=142.8

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE-EE-EeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VI-SCNKNICTLQITDTTGSHQFPAMQRLSISKGHA   81 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   81 (200)
                      +.+.+|++++|.-|+|||+++.+.+...++.+|..+++..+.- .. .-+...+++++||..|++++..+..-+++.+.+
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            3667999999999999999999999999988999998855532 22 223445789999999999999999999999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC-HHHHHHHHHHhCC-cEEEecccCCC
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS-AAEGEAEAKMWGC-HFMETSAKTNH  159 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~~vSa~~~~  159 (200)
                      .++|||++..-+++....|.+.+........ ....|+++..||+|........ ......+.++.|+ .++++|++.+.
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpn-g~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPN-GTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK  180 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCC-CCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence            9999999999999999999988887765433 2347889999999986543222 2445667788887 89999999999


Q ss_pred             cHHHHHHHHHHHHhccch
Q psy8700         160 NVKELFAELLNLEKNRNI  177 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~~~~  177 (200)
                      |+.|+...+++.+.-.+.
T Consensus       181 ni~Ea~r~lVe~~lvnd~  198 (229)
T KOG4423|consen  181 NIPEAQRELVEKILVNDE  198 (229)
T ss_pred             ChhHHHHHHHHHHHhhcc
Confidence            999999999998865553

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.80  E-value=2.9e-18  Score=138.95  Aligned_cols=154  Identities=20%  Similarity=0.207  Sum_probs=100.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcC----CCcccceeEEEEeC-------------CcEEEEEEEeCCCCCCCh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYI----PTIEDTYRQVISCN-------------KNICTLQITDTTGSHQFP   69 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~-------------~~~~~~~~~D~~G~~~~~   69 (200)
                      ..-|+++|.+++|||||+++|.+..+.....    .+.+.++.......             .....+.+|||||++.+.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            4569999999999999999999876543221    12221111100000             011248899999999999


Q ss_pred             hhHhhccccCCEEEEEeeCCCh---hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc------------
Q psy8700          70 AMQRLSISKGHAFILVYSCTSR---QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV------------  134 (200)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~------------  134 (200)
                      .++..++..+|++++|+|+++.   .++..+.    .+..        ...|+++++||+|+......            
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~--------~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak  151 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--------YKTPFVVAANKIDRIPGWRSHEGRPFMESFSK  151 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH--------cCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence            9999999999999999999873   3333322    1221        34799999999998642100            


Q ss_pred             CHH----H--------HHHHHH------------Hh--CCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         135 SAA----E--------GEAEAK------------MW--GCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       135 ~~~----~--------~~~~~~------------~~--~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      ...    .        ...+..            .+  ..+++++||++|.|++++++++....
T Consensus       152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence            000    0        000110            11  25899999999999999999887643

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.80  E-value=1.1e-18  Score=138.18  Aligned_cols=159  Identities=18%  Similarity=0.132  Sum_probs=101.3

Q ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhC--CCCCCc---------------------CCC-----cccce--eEEEEe
Q psy8700           1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKG--TFRESY---------------------IPT-----IEDTY--RQVISC   50 (200)
Q Consensus         1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~--~~~~~~---------------------~~~-----~~~~~--~~~~~~   50 (200)
                      |+.+.+.++|+++|..++|||||+.+|+..  ......                     ...     ..+.+  .....+
T Consensus         1 ~~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~   80 (426)
T TIGR00483         1 MAKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF   80 (426)
T ss_pred             CCCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE
Confidence            566778899999999999999999999852  221100                     000     00111  112234


Q ss_pred             CCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHH-HHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          51 NKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW-EVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        51 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      ....+.+.+|||||++.+.......+..+|++++|+|++++++....+.+. ..+....      ...|++|++||+|+.
T Consensus        81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~------~~~~iIVviNK~Dl~  154 (426)
T TIGR00483        81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL------GINQLIVAINKMDSV  154 (426)
T ss_pred             ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc------CCCeEEEEEEChhcc
Confidence            445578999999998887766666778999999999999875332111111 1122222      235799999999996


Q ss_pred             ccccc----CHHHHHHHHHHhC-----CcEEEecccCCCcHHHHH
Q psy8700         130 ENREV----SAAEGEAEAKMWG-----CHFMETSAKTNHNVKELF  165 (200)
Q Consensus       130 ~~~~~----~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~~~  165 (200)
                      +..+.    ...+...+.+..+     ++++++||++|.|+.+.+
T Consensus       155 ~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       155 NYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             CccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            42211    1122333444444     579999999999998643

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.80  E-value=5.2e-18  Score=117.82  Aligned_cols=151  Identities=19%  Similarity=0.201  Sum_probs=94.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCC----------ChhhHhhccc
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ----------FPAMQRLSIS   77 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~~   77 (200)
                      .|+++|++|||||||++++.+........++.+.+.. .....++   .+.+|||||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            4899999999999999999965554444444332222 2222222   799999999543          2233333443


Q ss_pred             ---cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH--HHHHHH--HhCCcE
Q psy8700          78 ---KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE--GEAEAK--MWGCHF  150 (200)
Q Consensus        78 ---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--~~~~~~--~~~~~~  150 (200)
                         ..+++++++|.......... .....+..        ...|+++++||+|+....+.....  ......  ....++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~--------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~  148 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDL-EMLDWLEE--------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPI  148 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHH-HHHHHHHH--------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCce
Confidence               35788899988765322221 12222322        237999999999986433222111  111111  334589


Q ss_pred             EEecccCCCcHHHHHHHHHHH
Q psy8700         151 METSAKTNHNVKELFAELLNL  171 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~~  171 (200)
                      +++|++++.++.+++++|.+.
T Consensus       149 ~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         149 ILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             EEEecCCCCCHHHHHHHHHHh
Confidence            999999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.80  E-value=9.5e-19  Score=137.37  Aligned_cols=161  Identities=14%  Similarity=0.121  Sum_probs=103.1

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCc------c-c----------------ceeEEEEeCC------cEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI------E-D----------------TYRQVISCNK------NIC   55 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~------~-~----------------~~~~~~~~~~------~~~   55 (200)
                      ...++|+++|.+++|||||+++|.+.... .+....      . .                .+......++      ...
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d-~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTD-THSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR   80 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecc-cCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence            46799999999999999999999753221 100000      0 0                0000000011      135


Q ss_pred             EEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC
Q psy8700          56 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS  135 (200)
Q Consensus        56 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  135 (200)
                      .+.+|||||++.+..........+|++++|+|++++....+....+..+. ..      ...|+++++||+|+.+.....
T Consensus        81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~------gi~~iIVvvNK~Dl~~~~~~~  153 (406)
T TIGR03680        81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-II------GIKNIVIVQNKIDLVSKEKAL  153 (406)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-Hc------CCCeEEEEEEccccCCHHHHH
Confidence            79999999999888877778888999999999997531122222232222 22      224789999999997543211


Q ss_pred             H--HHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         136 A--AEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       136 ~--~~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      .  .+...+...   .+++++++||++|.|+++++++|...+.
T Consensus       154 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       154 ENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            1  111222222   1568999999999999999999998654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.79  E-value=2.9e-18  Score=135.74  Aligned_cols=155  Identities=21%  Similarity=0.158  Sum_probs=96.3

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCC--CCCC------------cCCC--------------ccccee--EEEEeCCc
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRES------------YIPT--------------IEDTYR--QVISCNKN   53 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~------------~~~~--------------~~~~~~--~~~~~~~~   53 (200)
                      +-+.++|+++|.+++|||||+++|+...  ....            -..+              ..+.+.  ....++..
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            4456999999999999999999998422  1100            0000              011111  12234445


Q ss_pred             EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHH-HHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEE-LRPIWEVIRETKGGANELASIPIMLVGNKCDETENR  132 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  132 (200)
                      .+.+.+|||||+..+.......+..+|++++|+|++++..+.. ....+..+ ...      ...|++|++||+|+.+..
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~------~~~~iivviNK~Dl~~~~  155 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTL------GINQLIVAINKMDAVNYD  155 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHc------CCCeEEEEEEcccccccc
Confidence            6789999999998876666666788999999999987312211 12222222 222      224689999999997522


Q ss_pred             cc----CHHHHHHHHHHhC-----CcEEEecccCCCcHHHHH
Q psy8700         133 EV----SAAEGEAEAKMWG-----CHFMETSAKTNHNVKELF  165 (200)
Q Consensus       133 ~~----~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~~~  165 (200)
                      +.    ...+...+....+     .+++++||++|.|+.+..
T Consensus       156 ~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        156 EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            11    1112223333333     479999999999998744

>PRK10218 GTP-binding protein; Provisional

Probab=99.79  E-value=7.4e-18  Score=137.02  Aligned_cols=161  Identities=16%  Similarity=0.117  Sum_probs=111.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh--CCCCCCcC------------CCcccce-eEEEEeCCcEEEEEEEeCCCCCCChh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK--GTFRESYI------------PTIEDTY-RQVISCNKNICTLQITDTTGSHQFPA   70 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~   70 (200)
                      +.-+|+++|..++|||||+++|+.  +.+...+.            .+.+.+. .....++...+.+.+|||||+..+..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            456899999999999999999986  33322211            0111111 22334445567999999999999999


Q ss_pred             hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH-HHHHHHH------
Q psy8700          71 MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA-AEGEAEA------  143 (200)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~------  143 (200)
                      .+..+++.+|++++|+|+.+....+ ...+|..+..        ...|.++++||+|+.+.+.... .+...+.      
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~--------~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~  154 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA--------YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDAT  154 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH--------cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcc
Confidence            9999999999999999998764333 3444444433        2378999999999865432111 1111111      


Q ss_pred             -HHhCCcEEEecccCCC----------cHHHHHHHHHHHHhcc
Q psy8700         144 -KMWGCHFMETSAKTNH----------NVKELFAELLNLEKNR  175 (200)
Q Consensus       144 -~~~~~~~~~vSa~~~~----------~i~~~~~~i~~~~~~~  175 (200)
                       ....+|++.+||++|.          ++..+++.|.+.+...
T Consensus       155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence             1124689999999998          5889999999888654

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.79  E-value=1.6e-18  Score=124.76  Aligned_cols=148  Identities=20%  Similarity=0.124  Sum_probs=89.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC--CCCc------------C---------CCc-----cccee--EEEEeCCcEEEEE
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTF--RESY------------I---------PTI-----EDTYR--QVISCNKNICTLQ   58 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~--~~~~------------~---------~~~-----~~~~~--~~~~~~~~~~~~~   58 (200)
                      +|+++|.+|+|||||+++|+...-  ....            .         ...     .+.+.  ....+......+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            589999999999999999975321  1000            0         000     00010  0112222334788


Q ss_pred             EEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc----
Q psy8700          59 ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV----  134 (200)
Q Consensus        59 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----  134 (200)
                      +|||||+..+.......+..+|++++|+|++++..-.. ...+..+.. .      ...++++|+||+|+.+....    
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~-~------~~~~iIvviNK~D~~~~~~~~~~~  152 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSL-L------GIRHVVVAVNKMDLVDYSEEVFEE  152 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHH-c------CCCcEEEEEEchhcccCCHHHHHH
Confidence            99999988776666667889999999999987643222 222222222 2      22457889999998653211    


Q ss_pred             CHHHHHHHHHHhC---CcEEEecccCCCcHHHH
Q psy8700         135 SAAEGEAEAKMWG---CHFMETSAKTNHNVKEL  164 (200)
Q Consensus       135 ~~~~~~~~~~~~~---~~~~~vSa~~~~~i~~~  164 (200)
                      ...+...+....+   .+++++||++|.|+.+.
T Consensus       153 i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         153 IVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            0112223333444   35899999999998754

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.79  E-value=3.9e-18  Score=124.63  Aligned_cols=113  Identities=23%  Similarity=0.270  Sum_probs=79.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCC--C----CcCCCc----------ccc-eeEEEEeCCcEEEEEEEeCCCCCCChhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFR--E----SYIPTI----------EDT-YRQVISCNKNICTLQITDTTGSHQFPAM   71 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~--~----~~~~~~----------~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~   71 (200)
                      +|+++|.+|+|||||+++|+...-.  .    ....+.          +.+ ......+.....++.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            4899999999999999999863210  0    000000          000 1122333445578999999999999888


Q ss_pred             HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      ...+++.+|++++|+|..+.... ....+|..+..        ...|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~--------~~~P~iivvNK~D~~~  130 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK--------LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH--------cCCCEEEEEECccccC
Confidence            89999999999999999986543 34555655543        2379999999999853

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.79  E-value=2.9e-18  Score=113.73  Aligned_cols=135  Identities=22%  Similarity=0.270  Sum_probs=93.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCC----CChhhHhhccccCCEEEE
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH----QFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~~~~~~~~~i~   84 (200)
                      ||+++|+.|||||||+++|.+...  .|..|..      +.     +.-.++||||.-    .+..-......++|.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~------i~-----~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQA------IE-----YYDNTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccce------eE-----ecccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            899999999999999999988554  3322221      11     122459999932    233344445568999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKE  163 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~  163 (200)
                      +.|++++.+.-.  ..+   ..       .-..|++=|+||+|+..... ....+..+.+..|+ .+|++|+.+|.|+++
T Consensus        70 l~dat~~~~~~p--P~f---a~-------~f~~pvIGVITK~Dl~~~~~-~i~~a~~~L~~aG~~~if~vS~~~~eGi~e  136 (143)
T PF10662_consen   70 LQDATEPRSVFP--PGF---AS-------MFNKPVIGVITKIDLPSDDA-NIERAKKWLKNAGVKEIFEVSAVTGEGIEE  136 (143)
T ss_pred             EecCCCCCccCC--chh---hc-------ccCCCEEEEEECccCccchh-hHHHHHHHHHHcCCCCeEEEECCCCcCHHH
Confidence            999998754222  111   11       12379999999999974322 33445566666777 789999999999999


Q ss_pred             HHHHHH
Q psy8700         164 LFAELL  169 (200)
Q Consensus       164 ~~~~i~  169 (200)
                      +.+.|.
T Consensus       137 L~~~L~  142 (143)
T PF10662_consen  137 LKDYLE  142 (143)
T ss_pred             HHHHHh
Confidence            998874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.79  E-value=8.8e-18  Score=113.94  Aligned_cols=156  Identities=15%  Similarity=0.210  Sum_probs=111.9

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCC--cCCCc-ccc-eeEEEEe------CCcEEEEEEEeCCCCCCChhhHhhc
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTI-EDT-YRQVISC------NKNICTLQITDTTGSHQFPAMQRLS   75 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~~~~~-~~~-~~~~~~~------~~~~~~~~~~D~~G~~~~~~~~~~~   75 (200)
                      .+.||+++|+-++||||++++++.......  ..+.. ... ...++..      ......+.+++||||.++..++..+
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l   88 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEIL   88 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHH
Confidence            468999999999999999999987653111  00010 000 0011111      1223579999999999999999999


Q ss_pred             cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH--hCCcEEEe
Q psy8700          76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM--WGCHFMET  153 (200)
Q Consensus        76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~v  153 (200)
                      ++.+.++|+++|.+.+..+ .....+..+....       .+|++|++||.|+.+...  .....+....  ...+++++
T Consensus        89 ~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-------~ip~vVa~NK~DL~~a~p--pe~i~e~l~~~~~~~~vi~~  158 (187)
T COG2229          89 SRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-------PIPVVVAINKQDLFDALP--PEKIREALKLELLSVPVIEI  158 (187)
T ss_pred             hCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-------CCCEEEEeeccccCCCCC--HHHHHHHHHhccCCCceeee
Confidence            9999999999999998877 4344444444333       289999999999977553  3333333333  37799999


Q ss_pred             cccCCCcHHHHHHHHHHH
Q psy8700         154 SAKTNHNVKELFAELLNL  171 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~  171 (200)
                      +|..+++..+.++.+...
T Consensus       159 ~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         159 DATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ecccchhHHHHHHHHHhh
Confidence            999999999999988775

>COG2262 HflX GTPases [General function prediction only]

Probab=99.79  E-value=6.6e-18  Score=127.93  Aligned_cols=163  Identities=22%  Similarity=0.228  Sum_probs=117.4

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC--hhhHhh-----
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF--PAMQRL-----   74 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~~~~-----   74 (200)
                      ++.-..|+++|..|+|||||+|+|.+...  ....+.|.+.+.+.....++  ..+.+.||-|.-+.  ..+..+     
T Consensus       189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g--~~vlLtDTVGFI~~LP~~LV~AFksTL  266 (411)
T COG2262         189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG--RKVLLTDTVGFIRDLPHPLVEAFKSTL  266 (411)
T ss_pred             ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC--ceEEEecCccCcccCChHHHHHHHHHH
Confidence            45678999999999999999999997553  23445555555444333333  37999999995432  222222     


Q ss_pred             -ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEe
Q psy8700          75 -SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMET  153 (200)
Q Consensus        75 -~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v  153 (200)
                       ....+|.++.|+|+++|.....+......+.+..     ..+.|+++|.||+|+.....    .......... ..+.+
T Consensus       267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~-----~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~i  336 (411)
T COG2262         267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIG-----ADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFI  336 (411)
T ss_pred             HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcC-----CCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEE
Confidence             3347899999999999988888888888888776     35699999999999876443    1111111112 58899


Q ss_pred             cccCCCcHHHHHHHHHHHHhccchh
Q psy8700         154 SAKTNHNVKELFAELLNLEKNRNIS  178 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~~~~~~~  178 (200)
                      ||++|.|++.+.+.|.+.+......
T Consensus       337 SA~~~~gl~~L~~~i~~~l~~~~~~  361 (411)
T COG2262         337 SAKTGEGLDLLRERIIELLSGLRTE  361 (411)
T ss_pred             EeccCcCHHHHHHHHHHHhhhcccc
Confidence            9999999999999999988754433

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.78  E-value=4.1e-18  Score=138.61  Aligned_cols=158  Identities=18%  Similarity=0.176  Sum_probs=109.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC--CCCCCcCC------------Ccccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG--TFRESYIP------------TIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQR   73 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~--~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~   73 (200)
                      +|+++|..++|||||+++|+..  .+......            ..+-+. .....+....+.+.+|||||+.++.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            6999999999999999999862  22221100            001111 12223334457899999999999998889


Q ss_pred             hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC-HHHHHHHH-------HH
Q psy8700          74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS-AAEGEAEA-------KM  145 (200)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~-------~~  145 (200)
                      .++..+|++++|+|+.+.. ..+...+|..+...        ..|++|++||+|+.+.+... ..+...+.       ..
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--------~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~  153 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--------GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQ  153 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--------CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccc
Confidence            9999999999999998753 34445666655542        37899999999986543211 11111211       12


Q ss_pred             hCCcEEEecccCCC----------cHHHHHHHHHHHHhcc
Q psy8700         146 WGCHFMETSAKTNH----------NVKELFAELLNLEKNR  175 (200)
Q Consensus       146 ~~~~~~~vSa~~~~----------~i~~~~~~i~~~~~~~  175 (200)
                      ..++++++||++|.          |+..+|+.|.+.+...
T Consensus       154 l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       154 LDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             ccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            34689999999996          7999999999988654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.78  E-value=8.5e-18  Score=134.58  Aligned_cols=157  Identities=21%  Similarity=0.239  Sum_probs=112.4

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCC------ChhhHhhccc-
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ------FPAMQRLSIS-   77 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~------~~~~~~~~~~-   77 (200)
                      +..+|+++|.||+|||||+|+|++.+..-...|  +.+. +++..+.....+++++|+||..+      .....+.++. 
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwp--GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWP--GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCC--CeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            457799999999999999999999764222222  2223 23333333444799999999433      2345555554 


Q ss_pred             -cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700          78 -KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK  156 (200)
Q Consensus        78 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  156 (200)
                       +.|+++.|+|+++-++  ++.-.+ .+.+        -..|+++++|++|..... ....+...+.+..|+|++++||+
T Consensus        80 ~~~D~ivnVvDAtnLeR--nLyltl-QLlE--------~g~p~ilaLNm~D~A~~~-Gi~ID~~~L~~~LGvPVv~tvA~  147 (653)
T COG0370          80 GKPDLIVNVVDATNLER--NLYLTL-QLLE--------LGIPMILALNMIDEAKKR-GIRIDIEKLSKLLGVPVVPTVAK  147 (653)
T ss_pred             CCCCEEEEEcccchHHH--HHHHHH-HHHH--------cCCCeEEEeccHhhHHhc-CCcccHHHHHHHhCCCEEEEEee
Confidence             4699999999998753  322222 2333        337899999999985544 34567788899999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhccc
Q psy8700         157 TNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       157 ~~~~i~~~~~~i~~~~~~~~  176 (200)
                      +|.|++++++.+.+......
T Consensus       148 ~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         148 RGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             cCCCHHHHHHHHHHhccccc
Confidence            99999999999988665554

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=1.2e-17  Score=115.66  Aligned_cols=159  Identities=18%  Similarity=0.197  Sum_probs=104.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCC----------CCCChhhH
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTG----------SHQFPAMQ   72 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G----------~~~~~~~~   72 (200)
                      ++...-|+++|.+|+|||||||+|++.+--.....+.+.+.. ..+.+++.   +.++|.||          .+.+..+.
T Consensus        21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i   97 (200)
T COG0218          21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI   97 (200)
T ss_pred             CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence            456789999999999999999999996632222223332322 23344444   88999999          23455666


Q ss_pred             hhcccc---CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH---HHHh
Q psy8700          73 RLSISK---GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE---AKMW  146 (200)
Q Consensus        73 ~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~  146 (200)
                      ..|++.   ..++++++|+..+-...+. ..++.+..        ...|++|++||+|.....+.........   ....
T Consensus        98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~--------~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~  168 (200)
T COG0218          98 EEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE--------LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP  168 (200)
T ss_pred             HHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH--------cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC
Confidence            666664   4677888887765433231 33333333        4489999999999988765543322222   1112


Q ss_pred             CCc--EEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         147 GCH--FMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       147 ~~~--~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      ...  ++.+|+..+.|++++.+.|.+.+..
T Consensus       169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            222  7788999999999999999987754

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.78  E-value=5.4e-18  Score=133.08  Aligned_cols=164  Identities=15%  Similarity=0.085  Sum_probs=101.1

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCc-----CCCcccc-----------------eeEEEEeC--C----cE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESY-----IPTIEDT-----------------YRQVISCN--K----NI   54 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~-----~~~~~~~-----------------~~~~~~~~--~----~~   54 (200)
                      ...+.++|+++|..++|||||+.+|.+.......     ..+..-.                 +......+  +    ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            4567899999999999999999999653211100     0011000                 00000000  0    13


Q ss_pred             EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700          55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE  133 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  133 (200)
                      ..+.+|||||+..+..........+|++++|+|++++. .... ...+..+.. .      ...|+++|+||+|+.+...
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~-~------~i~~iiVVlNK~Dl~~~~~  156 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDI-I------GIKNIVIVQNKIDLVSKER  156 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHH-c------CCCcEEEEEEeeccccchh
Confidence            57899999998776665555566679999999999653 1222 222222222 2      2247899999999976432


Q ss_pred             cCH--HHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         134 VSA--AEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       134 ~~~--~~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      ...  .+...+...   .+.+++++||++|.|++++++.|.+.+..
T Consensus       157 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        157 ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            211  111222221   24689999999999999999999887643

>KOG1707|consensus

Probab=99.77  E-value=3.1e-18  Score=134.06  Aligned_cols=170  Identities=24%  Similarity=0.314  Sum_probs=128.2

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      +....+||+++|+.|+||||||-+|+...+.+...+-.+...-. ..+....+...++|++.....+......++.+|++
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi   83 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI   83 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC-CccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence            35678999999999999999999999999877766655544332 22333445689999997776667778899999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-HHHHHHHh-CC-cEEEecccCCC
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-GEAEAKMW-GC-HFMETSAKTNH  159 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~-~~-~~~~vSa~~~~  159 (200)
                      +++++++++++++.+...|..+.+...  ....+.|+|+|+||.|........... -.-....+ .+ ..++|||++..
T Consensus        84 ~lvyavd~~~T~D~ist~WLPlir~~~--~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~  161 (625)
T KOG1707|consen   84 CLVYAVDDESTVDRISTKWLPLIRQLF--GDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLA  161 (625)
T ss_pred             EEEEecCChHHhhhhhhhhhhhhhccc--CCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence            999999999999999999977666553  245789999999999998655442222 11122222 23 57899999999


Q ss_pred             cHHHHHHHHHHHHhcc
Q psy8700         160 NVKELFAELLNLEKNR  175 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~~  175 (200)
                      ++.++|...-..+...
T Consensus       162 n~~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  162 NVSELFYYAQKAVIHP  177 (625)
T ss_pred             hhHhhhhhhhheeecc
Confidence            9999998777665433

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.77  E-value=1.2e-17  Score=136.50  Aligned_cols=155  Identities=17%  Similarity=0.219  Sum_probs=100.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC---CCCc--CCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTF---RESY--IPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      -|+++|.+++|||||+++|.+...   .+..  ..|....+......++  ..+.+|||||++.+.......+..+|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            589999999999999999986332   1111  1122111111111122  35899999999988777777888999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCH--HHHHHHHHHhC---CcEEEecccC
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSA--AEGEAEAKMWG---CHFMETSAKT  157 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~vSa~~  157 (200)
                      +|+|++++..-+. ...+..+.. .       ..| ++||+||+|+.+......  .+...+....+   .+++++||++
T Consensus        80 LVVda~eg~~~qT-~ehl~il~~-l-------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t  150 (614)
T PRK10512         80 LVVACDDGVMAQT-REHLAILQL-T-------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATE  150 (614)
T ss_pred             EEEECCCCCcHHH-HHHHHHHHH-c-------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence            9999987432222 222222222 2       144 579999999975432221  12222222223   5899999999


Q ss_pred             CCcHHHHHHHHHHHHhc
Q psy8700         158 NHNVKELFAELLNLEKN  174 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~~~  174 (200)
                      |.|++++++.|.+....
T Consensus       151 G~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        151 GRGIDALREHLLQLPER  167 (614)
T ss_pred             CCCCHHHHHHHHHhhcc
Confidence            99999999999876543

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.77  E-value=7.1e-18  Score=121.69  Aligned_cols=162  Identities=17%  Similarity=0.184  Sum_probs=98.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEE-Ee-CCcEEEEEEEeCCCCCCChh-----hHhhccccCCE
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVI-SC-NKNICTLQITDTTGSHQFPA-----MQRLSISKGHA   81 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~D~~G~~~~~~-----~~~~~~~~~~~   81 (200)
                      ||+++|+.+|||||..+-+.. ++.+......+.+..... .+ ......+.+||+||+..+..     .....++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~-~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFH-KYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHc-CCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999996666554 443333333333332211 11 23446899999999875533     46778999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH------HHHHHHHHHhC---CcEEE
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA------AEGEAEAKMWG---CHFME  152 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~------~~~~~~~~~~~---~~~~~  152 (200)
                      +|||+|+.+.+....+..+...+.....   ..++..+.|+++|+|+........      ..........+   +.++.
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~---~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~  156 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQ---YSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL  156 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHH---HSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHH---hCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence            9999999954544454444444443332   237889999999999975432111      11222223344   67899


Q ss_pred             ecccCCCcHHHHHHHHHHHHhcc
Q psy8700         153 TSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       153 vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ||..+ ..+.++|..|++.+...
T Consensus       157 TSI~D-~Sly~A~S~Ivq~LiP~  178 (232)
T PF04670_consen  157 TSIWD-ESLYEAWSKIVQKLIPN  178 (232)
T ss_dssp             E-TTS-THHHHHHHHHHHTTSTT
T ss_pred             ccCcC-cHHHHHHHHHHHHHccc
Confidence            99877 58999999999977543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.77  E-value=2.9e-17  Score=116.58  Aligned_cols=147  Identities=18%  Similarity=0.160  Sum_probs=92.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCC------Cc--CCC-----cccce--eEEEEeCCcEEEEEEEeCCCCCCChhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRE------SY--IPT-----IEDTY--RQVISCNKNICTLQITDTTGSHQFPAM   71 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~------~~--~~~-----~~~~~--~~~~~~~~~~~~~~~~D~~G~~~~~~~   71 (200)
                      .++|+++|.+++|||||+++|+......      .+  ...     ..+.+  .....+.....++.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            5789999999999999999998631100      00  000     01111  112233444568899999998887777


Q ss_pred             HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCH---HHHHHHHHHh-
Q psy8700          72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSA---AEGEAEAKMW-  146 (200)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~-  146 (200)
                      ....+..+|++++|+|+..+-.- .....+..+....        .| +++++||+|+....+...   .+...+.... 
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~~--------~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g  152 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMP-QTREHLLLARQVG--------VPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG  152 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--------CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence            77788899999999999875332 2233444443322        55 779999999864322111   1222222222 


Q ss_pred             ----CCcEEEecccCCCcHH
Q psy8700         147 ----GCHFMETSAKTNHNVK  162 (200)
Q Consensus       147 ----~~~~~~vSa~~~~~i~  162 (200)
                          +++++++||++|.|+.
T Consensus       153 ~~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         153 FDGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             ccccCCeEEEeeCccccCCC
Confidence                3589999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.76  E-value=3e-17  Score=118.94  Aligned_cols=152  Identities=16%  Similarity=0.164  Sum_probs=95.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCC-----------------------cccceeE--------------EEEeC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-----------------------IEDTYRQ--------------VISCN   51 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~--------------~~~~~   51 (200)
                      ||+++|+.++|||||++++..+.+.......                       .+.....              .....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999999875553211100                       0000000              00111


Q ss_pred             CcEEEEEEEeCCCCCCChhhHhhccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          52 KNICTLQITDTTGSHQFPAMQRLSIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        52 ~~~~~~~~~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      .....+.++||||+..+.......+.  .+|++++|+|+..+..- ....++..+..        ...|+++|+||+|+.
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~--------~~ip~ivvvNK~D~~  151 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA--------LNIPVFVVVTKIDLA  151 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH--------cCCCEEEEEECcccc
Confidence            22357899999999887665554453  68999999998765432 22334443433        337999999999986


Q ss_pred             cccccCHHHHHHHHHHh-----------------------------CCcEEEecccCCCcHHHHHHHHHH
Q psy8700         130 ENREVSAAEGEAEAKMW-----------------------------GCHFMETSAKTNHNVKELFAELLN  170 (200)
Q Consensus       130 ~~~~~~~~~~~~~~~~~-----------------------------~~~~~~vSa~~~~~i~~~~~~i~~  170 (200)
                      +........ .......                             ..|+|.+|+.+|.|++++++.|..
T Consensus       152 ~~~~~~~~~-~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         152 PANILQETL-KDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             CHHHHHHHH-HHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            543322211 1111111                             238999999999999999988754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.76  E-value=3.5e-17  Score=120.64  Aligned_cols=160  Identities=23%  Similarity=0.247  Sum_probs=107.8

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcccceeEEEEeCCcEEEEEEEeCCCCC-C----Chhh---Hhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCNKNICTLQITDTTGSH-Q----FPAM---QRL   74 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~----~~~~---~~~   74 (200)
                      .++...|++.|+||+|||||++++++.+..-. |.-|+-+..-.  +++.....+|++||||.- +    .+.+   ...
T Consensus       165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG--hfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~  242 (346)
T COG1084         165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG--HFERGYLRIQVIDTPGLLDRPLEERNEIERQAIL  242 (346)
T ss_pred             CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe--eeecCCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence            44778999999999999999999998664322 22222222222  344455689999999932 1    1221   111


Q ss_pred             cccc-CCEEEEEeeCCC--hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEE
Q psy8700          75 SISK-GHAFILVYSCTS--RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFM  151 (200)
Q Consensus        75 ~~~~-~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  151 (200)
                      .++. +++++|+||.+.  ..+++....++..+.....       .|+++|+||+|..+.......... .....+....
T Consensus       243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-------~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~  314 (346)
T COG1084         243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-------APIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPL  314 (346)
T ss_pred             HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-------CCeEEEEecccccchhHHHHHHHH-HHhhcccccc
Confidence            2222 588899999874  5577777788888877663       799999999998765544433333 3333344577


Q ss_pred             EecccCCCcHHHHHHHHHHHHh
Q psy8700         152 ETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       152 ~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      .+++..+.+++.+-+.+.....
T Consensus       315 ~~~~~~~~~~d~~~~~v~~~a~  336 (346)
T COG1084         315 KISATKGCGLDKLREEVRKTAL  336 (346)
T ss_pred             ceeeeehhhHHHHHHHHHHHhh
Confidence            7888888888888877777643

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.76  E-value=3.4e-17  Score=116.86  Aligned_cols=162  Identities=16%  Similarity=0.121  Sum_probs=95.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccc--ceeEEEEe-CCcEEEEEEEeCCCCCCChh-----hHhhcccc
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED--TYRQVISC-NKNICTLQITDTTGSHQFPA-----MQRLSISK   78 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~D~~G~~~~~~-----~~~~~~~~   78 (200)
                      ++||+++|++|+|||||+|+|.+...........+.  +......+ ......+.+|||||......     +....+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            479999999999999999999985542221111111  11110001 11123689999999754322     22223567


Q ss_pred             CCEEEEEeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc-------CH-H---HHH-HHH--
Q psy8700          79 GHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENREV-------SA-A---EGE-AEA--  143 (200)
Q Consensus        79 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-------~~-~---~~~-~~~--  143 (200)
                      +|.++++.+  +  ++.... .++..+...        ..|+++|+||+|+....+.       .. .   ... ...  
T Consensus        81 ~d~~l~v~~--~--~~~~~d~~~~~~l~~~--------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  148 (197)
T cd04104          81 YDFFIIISS--T--RFSSNDVKLAKAIQCM--------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN  148 (197)
T ss_pred             cCEEEEEeC--C--CCCHHHHHHHHHHHHh--------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence            888888743  2  233333 333334332        2699999999998532210       00 1   011 111  


Q ss_pred             -HHhC---CcEEEeccc--CCCcHHHHHHHHHHHHhccchhHH
Q psy8700         144 -KMWG---CHFMETSAK--TNHNVKELFAELLNLEKNRNISLQ  180 (200)
Q Consensus       144 -~~~~---~~~~~vSa~--~~~~i~~~~~~i~~~~~~~~~~~~  180 (200)
                       ...+   .++|.+|+.  .+.++..+.+.|...+.++..+.-
T Consensus       149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~~  191 (197)
T cd04104         149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHVF  191 (197)
T ss_pred             HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHHH
Confidence             1112   378999998  578999999999999976655443

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG1489|consensus

Probab=99.75  E-value=2.8e-17  Score=120.36  Aligned_cols=157  Identities=20%  Similarity=0.244  Sum_probs=108.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----ChhhHhh---ccccC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----FPAMQRL---SISKG   79 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~---~~~~~   79 (200)
                      ..|.++|.||+|||||+++++..+.. ..|.-|+-...-.++..++. .++.+-|.||.-+    .+.+...   .++++
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            45789999999999999999886541 11222211111112222222 3599999999442    2333333   45679


Q ss_pred             CEEEEEeeCCCh---hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-hCCcEEEecc
Q psy8700          80 HAFILVYSCTSR---QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-WGCHFMETSA  155 (200)
Q Consensus        80 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa  155 (200)
                      +.++||+|++.+   ..+++++.++.++..+..   ...+.|.+||+||+|+++..   ......+.+. .+..++++||
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek---~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA  349 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK---GLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSA  349 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh---hhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeee
Confidence            999999999988   888888888888887776   46788999999999986322   1112333333 3446999999


Q ss_pred             cCCCcHHHHHHHHHHH
Q psy8700         156 KTNHNVKELFAELLNL  171 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~  171 (200)
                      +.++++.++++.|.+.
T Consensus       350 ~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  350 KSGEGLEELLNGLREL  365 (366)
T ss_pred             ccccchHHHHHHHhhc
Confidence            9999999999988654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.75  E-value=7.4e-17  Score=131.24  Aligned_cols=155  Identities=20%  Similarity=0.224  Sum_probs=98.5

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCC----CcccceeEEEEe---CCcE-----E-----EEEEEeCCCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIP----TIEDTYRQVISC---NKNI-----C-----TLQITDTTGSHQ   67 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~---~~~~-----~-----~~~~~D~~G~~~   67 (200)
                      ..+..|+++|.+++|||||+++|.+.........    +.+.++......   .+..     .     .+.||||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            3456799999999999999999986543222111    122111110000   0111     1     268999999999


Q ss_pred             ChhhHhhccccCCEEEEEeeCCC---hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc----------
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTS---RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV----------  134 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----------  134 (200)
                      +..++...+..+|++++|+|+++   +.++..+.    .+..        ...|+++++||+|+......          
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~--------~~vpiIvviNK~D~~~~~~~~~~~~~~e~~  151 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR--------RKTPFVVAANKIDRIPGWKSTEDAPFLESI  151 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH--------cCCCEEEEEECcCCchhhhhhcCchHHHHH
Confidence            99888888889999999999987   44444332    1221        34799999999998521100          


Q ss_pred             ----C--HHH-------H-HHHHH------------H--hCCcEEEecccCCCcHHHHHHHHHHH
Q psy8700         135 ----S--AAE-------G-EAEAK------------M--WGCHFMETSAKTNHNVKELFAELLNL  171 (200)
Q Consensus       135 ----~--~~~-------~-~~~~~------------~--~~~~~~~vSa~~~~~i~~~~~~i~~~  171 (200)
                          .  ...       . ..+..            .  ...+++++||++|.|+.++++.+...
T Consensus       152 ~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        152 EKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence                0  000       0 00110            0  12479999999999999999988653

>cd04167 Snu114p Snu114p subfamily

Probab=99.75  E-value=2.6e-17  Score=118.85  Aligned_cols=112  Identities=20%  Similarity=0.199  Sum_probs=77.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCC-----------cCCCc------ccce-e--EEEEe---CCcEEEEEEEeCCCC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRES-----------YIPTI------EDTY-R--QVISC---NKNICTLQITDTTGS   65 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~-----------~~~~~------~~~~-~--~~~~~---~~~~~~~~~~D~~G~   65 (200)
                      +|+++|..|+|||||+++|+.......           +..+.      +.+. .  .....   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            589999999999999999987443211           00110      0010 0  11111   355689999999999


Q ss_pred             CCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      ..+......++..+|++++|+|+.+..+... ..++.....        .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--------~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--------EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--------cCCCEEEEEECcccC
Confidence            9998888889999999999999987665433 233332221        337999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.73  E-value=2.3e-17  Score=119.60  Aligned_cols=147  Identities=18%  Similarity=0.156  Sum_probs=88.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC--CCC-C--------------------cCCCc-----cccee--EEEEeCCcEEEEE
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGT--FRE-S--------------------YIPTI-----EDTYR--QVISCNKNICTLQ   58 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~--~~~-~--------------------~~~~~-----~~~~~--~~~~~~~~~~~~~   58 (200)
                      .|+++|.+++|||||+.+|+...  ... .                    +....     .+.+.  ....+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            48999999999999999996421  100 0                    00000     01111  1222333456899


Q ss_pred             EEeCCCCCCChhhHhhccccCCEEEEEeeCCChhH------HHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700          59 ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQS------LEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR  132 (200)
Q Consensus        59 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  132 (200)
                      +|||||+..+.......+..+|++++|+|++++..      .......+.... ..      ...|+++++||+|+....
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~iiivvNK~Dl~~~~  153 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TL------GVKQLIVAVNKMDDVTVN  153 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-Hc------CCCeEEEEEEcccccccc
Confidence            99999987766666667778999999999998521      112222222222 11      236899999999997321


Q ss_pred             ---c-cCH--HHHHHHHHHh-----CCcEEEecccCCCcHH
Q psy8700         133 ---E-VSA--AEGEAEAKMW-----GCHFMETSAKTNHNVK  162 (200)
Q Consensus       133 ---~-~~~--~~~~~~~~~~-----~~~~~~vSa~~~~~i~  162 (200)
                         . ...  ..........     .++++++||++|.|+.
T Consensus       154 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         154 WSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence               1 111  1111122222     2579999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.73  E-value=1.8e-16  Score=116.62  Aligned_cols=159  Identities=20%  Similarity=0.132  Sum_probs=105.4

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC-------hhhHhhc
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCNKNICTLQITDTTGSHQF-------PAMQRLS   75 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~   75 (200)
                      ++...+++++|+|++|||||+++|.+...... |.-|+-...-..+.  -...++|+.|+||.-.-       .......
T Consensus        60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~--Y~ga~IQild~Pgii~gas~g~grG~~vlsv  137 (365)
T COG1163          60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLE--YKGAQIQLLDLPGIIEGASSGRGRGRQVLSV  137 (365)
T ss_pred             ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEe--ecCceEEEEcCcccccCcccCCCCcceeeee
Confidence            56778999999999999999999998664322 22222222222333  34458999999994321       2445667


Q ss_pred             cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCC-----------------------------------------
Q psy8700          76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANEL-----------------------------------------  114 (200)
Q Consensus        76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------  114 (200)
                      .++||++++|+|+....+-  .+.....+.+.....+..                                         
T Consensus       138 ~R~ADlIiiVld~~~~~~~--~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~n  215 (365)
T COG1163         138 ARNADLIIIVLDVFEDPHH--RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHN  215 (365)
T ss_pred             eccCCEEEEEEecCCChhH--HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCccc
Confidence            8899999999999865541  223333333332221111                                         


Q ss_pred             ----------------------CCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         115 ----------------------ASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       115 ----------------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                                            .-.|.++|.||+|+.+...     ...+.+..  .++.+||+.+.|++++.+.|++.+
T Consensus       216 A~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~-----~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         216 ADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEE-----LERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             ceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHH-----HHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                                  1129999999999876222     22222222  889999999999999999999987


Q ss_pred             h
Q psy8700         173 K  173 (200)
Q Consensus       173 ~  173 (200)
                      .
T Consensus       289 ~  289 (365)
T COG1163         289 G  289 (365)
T ss_pred             C
Confidence            4

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.73  E-value=1e-16  Score=125.59  Aligned_cols=149  Identities=15%  Similarity=0.162  Sum_probs=93.0

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCC-----C-Cc------CCC-cccce--eEEEEeCCcEEEEEEEeCCCCC
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR-----E-SY------IPT-IEDTY--RQVISCNKNICTLQITDTTGSH   66 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~-----~-~~------~~~-~~~~~--~~~~~~~~~~~~~~~~D~~G~~   66 (200)
                      .++.+.++|+++|..++|||||+++|++....     . .+      ... ..+.+  .....++.....+.+|||||++
T Consensus         7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence            45677899999999999999999999742100     0 00      000 00111  1223344455688999999998


Q ss_pred             CChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEE-EEeeCCCCCcccccCH---HHHHHH
Q psy8700          67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM-LVGNKCDETENREVSA---AEGEAE  142 (200)
Q Consensus        67 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~---~~~~~~  142 (200)
                      +|..........+|++++|+|+.++...+. ...+..+..        ...|.+ +++||+|+.+..+...   .+...+
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~--------~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~  157 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ--------VGVPYIVVFLNKCDMVDDEELLELVEMEVREL  157 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--------cCCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence            887666666778899999999987433222 233333332        225655 6899999875432211   123333


Q ss_pred             HHHhC-----CcEEEecccCCC
Q psy8700         143 AKMWG-----CHFMETSAKTNH  159 (200)
Q Consensus       143 ~~~~~-----~~~~~vSa~~~~  159 (200)
                      ....+     ++++++||+++.
T Consensus       158 l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       158 LSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHhcCCCccCccEEECcccccc
Confidence            33333     689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.73  E-value=1.4e-16  Score=118.00  Aligned_cols=164  Identities=21%  Similarity=0.202  Sum_probs=112.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC----ChhhHh---hccccCC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ----FPAMQR---LSISKGH   80 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~---~~~~~~~   80 (200)
                      -|.++|.|++|||||++.++..+.. ..|.-|+-...-..+.. ...-.+.+-|.||.-+    -..+..   ..++++.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            4789999999999999999886542 22332322222223333 2223689999999443    122222   3556789


Q ss_pred             EEEEEeeCCChh---HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCc-EEEeccc
Q psy8700          81 AFILVYSCTSRQ---SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCH-FMETSAK  156 (200)
Q Consensus        81 ~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~vSa~  156 (200)
                      ++++|+|++..+   ..+++..+..++..+..   ...+.|.+||+||+|+....+........+....+.. .+++|+.
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~---~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~  316 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP---KLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISAL  316 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhH---HhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehh
Confidence            999999998655   36777777777777654   4678899999999997665544444445555555542 2229999


Q ss_pred             CCCcHHHHHHHHHHHHhccc
Q psy8700         157 TNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       157 ~~~~i~~~~~~i~~~~~~~~  176 (200)
                      ++.|++++...+.+.+.+..
T Consensus       317 t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         317 TREGLDELLRALAELLEETK  336 (369)
T ss_pred             cccCHHHHHHHHHHHHHHhh
Confidence            99999999999999887665

>PRK12736 elongation factor Tu; Reviewed

Probab=99.72  E-value=2.1e-16  Score=123.76  Aligned_cols=162  Identities=15%  Similarity=0.149  Sum_probs=101.5

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCC---C---cC-----C-C-cccce--eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE---S---YI-----P-T-IEDTY--RQVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~---~---~~-----~-~-~~~~~--~~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      .+-+.++|+++|.+++|||||+++|++.....   .   +.     + . ..+.+  .....+......+.++||||+.+
T Consensus         8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736          8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence            34567899999999999999999998632100   0   00     0 0 00111  11223334456789999999887


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCH---HHHHHHH
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSA---AEGEAEA  143 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~  143 (200)
                      |.......+..+|++++|+|+.++..... ...+..+...        ..| +++++||+|+.+..+...   .+...+.
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~--------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l  158 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV--------GVPYLVVFLNKVDLVDDEELLELVEMEVRELL  158 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence            77766666778999999999987533222 2333333322        266 678999999874332211   1222222


Q ss_pred             HHhC-----CcEEEecccCCC--------cHHHHHHHHHHHHh
Q psy8700         144 KMWG-----CHFMETSAKTNH--------NVKELFAELLNLEK  173 (200)
Q Consensus       144 ~~~~-----~~~~~vSa~~~~--------~i~~~~~~i~~~~~  173 (200)
                      ...+     ++++++||++|.        ++.++++.+.+.+.
T Consensus       159 ~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        159 SEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            2333     589999999983        57788887777654

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.70  E-value=7.6e-16  Score=116.60  Aligned_cols=163  Identities=17%  Similarity=0.172  Sum_probs=98.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEE---------------------eCC-cEEEEEEEeCCCC-
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVIS---------------------CNK-NICTLQITDTTGS-   65 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~D~~G~-   65 (200)
                      |+++|.|++|||||+|+|++..... .|..++-........                     .++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            5899999999999999999866421 121111111111111                     122 3368999999997 


Q ss_pred             ---CCChhhHhhc---cccCCEEEEEeeCCCh-------------hHHHHHHHHHHHHHH---------------HhCC-
Q psy8700          66 ---HQFPAMQRLS---ISKGHAFILVYSCTSR-------------QSLEELRPIWEVIRE---------------TKGG-  110 (200)
Q Consensus        66 ---~~~~~~~~~~---~~~~~~~i~v~d~~~~-------------~~~~~~~~~~~~~~~---------------~~~~-  110 (200)
                         ++...+...+   ++++|++++|+|+...             +..+++.....++..               .... 
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               4455555554   8899999999999731             112222211111111               0000 


Q ss_pred             -----------------------------C-C------------------CCCCCcEEEEeeCCCCCcccccCHHHHHHH
Q psy8700         111 -----------------------------A-N------------------ELASIPIMLVGNKCDETENREVSAAEGEAE  142 (200)
Q Consensus       111 -----------------------------~-~------------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  142 (200)
                                                   . .                  .....|+++++||.|+.+..+.   .....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~---~~~l~  237 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN---ISKLR  237 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH---HHHHH
Confidence                                         0 0                  0234699999999997543321   11111


Q ss_pred             HHHhCCcEEEecccCCCcHHHHHH-HHHHHHhcc
Q psy8700         143 AKMWGCHFMETSAKTNHNVKELFA-ELLNLEKNR  175 (200)
Q Consensus       143 ~~~~~~~~~~vSa~~~~~i~~~~~-~i~~~~~~~  175 (200)
                      .......++.+||+.+.++.++.+ .+.+++.+.
T Consensus       238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~  271 (318)
T cd01899         238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD  271 (318)
T ss_pred             hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence            222345899999999999999998 688888553

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.70  E-value=5.4e-16  Score=121.53  Aligned_cols=161  Identities=16%  Similarity=0.156  Sum_probs=100.4

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCC---C-----cCCC-----ccccee--EEEEeCCcEEEEEEEeCCCCCC
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE---S-----YIPT-----IEDTYR--QVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~---~-----~~~~-----~~~~~~--~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      ++.+.++|+++|.+++|||||+++|++.....   .     ....     ..+.+.  ....+.....++.|+||||+..
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            45677999999999999999999998621100   0     0000     001111  1222333445789999999887


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEE-EEeeCCCCCcccccCH---HHHHHHH
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM-LVGNKCDETENREVSA---AEGEAEA  143 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~---~~~~~~~  143 (200)
                      +.......+..+|++++|+|+.+....+ ....+..+..        ...|.+ +++||+|+.+..+...   .+...+.
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~--------~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l  158 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--------VGVPYIVVFLNKCDMVDDEELLELVEMEVRELL  158 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH--------cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence            7766667778899999999998753222 2233333332        236755 5799999975322111   1222233


Q ss_pred             HHh-----CCcEEEecccCCC----------cHHHHHHHHHHHH
Q psy8700         144 KMW-----GCHFMETSAKTNH----------NVKELFAELLNLE  172 (200)
Q Consensus       144 ~~~-----~~~~~~vSa~~~~----------~i~~~~~~i~~~~  172 (200)
                      ...     .++++++||++|.          ++..+++.+.+.+
T Consensus       159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            332     2689999999984          5677777777654

>cd04169 RF3 RF3 subfamily

Probab=99.70  E-value=8.7e-16  Score=114.09  Aligned_cols=115  Identities=19%  Similarity=0.279  Sum_probs=78.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC--CCCC-c-------CCCc----------c-cceeEEEEeCCcEEEEEEEeCCCCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGT--FRES-Y-------IPTI----------E-DTYRQVISCNKNICTLQITDTTGSH   66 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~--~~~~-~-------~~~~----------~-~~~~~~~~~~~~~~~~~~~D~~G~~   66 (200)
                      -+|+++|.+|+|||||+++|+...  .... .       ..+.          . ........++...+.+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            469999999999999999998521  1100 0       0000          0 0112233445566799999999998


Q ss_pred             CChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700          67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN  131 (200)
Q Consensus        67 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  131 (200)
                      ++.......++.+|++++|+|+++.... ....+|.....        .+.|+++++||+|+.+.
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~--------~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL--------RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh--------cCCCEEEEEECCccCCC
Confidence            8887777788999999999999875432 22344443332        34799999999998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>CHL00071 tufA elongation factor Tu

Probab=99.70  E-value=6.1e-16  Score=121.70  Aligned_cols=149  Identities=13%  Similarity=0.111  Sum_probs=93.3

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCC---C-----cC----CC-ccccee--EEEEeCCcEEEEEEEeCCCCCC
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE---S-----YI----PT-IEDTYR--QVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~---~-----~~----~~-~~~~~~--~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      .+.+.++|+++|.+++|||||+++|++..-..   .     ..    .. ..+.+.  ....+.....++.|+||||+..
T Consensus         8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence            45667999999999999999999998642100   0     00    00 011111  1122333445788999999887


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCH---HHHHHHH
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSA---AEGEAEA  143 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~  143 (200)
                      +.......+..+|++++|+|+.....-+ ....+..+..        ...| +++++||+|+.+..+...   .+...+.
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~--------~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l  158 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQ--------VGVPNIVVFLNKEDQVDDEELLELVELEVRELL  158 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHH--------cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            7777777778899999999998654322 2333333332        2267 678999999975433211   1222222


Q ss_pred             HHhC-----CcEEEecccCCCc
Q psy8700         144 KMWG-----CHFMETSAKTNHN  160 (200)
Q Consensus       144 ~~~~-----~~~~~vSa~~~~~  160 (200)
                      ...+     ++++++||.+|.|
T Consensus       159 ~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        159 SKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHhCCCCCcceEEEcchhhccc
Confidence            3322     5899999999874

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.69  E-value=1.7e-15  Score=109.39  Aligned_cols=112  Identities=13%  Similarity=0.159  Sum_probs=76.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC--CCCc------CCCc------ccce---eEEEEeC--------CcEEEEEEEeCC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTF--RESY------IPTI------EDTY---RQVISCN--------KNICTLQITDTT   63 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~--~~~~------~~~~------~~~~---~~~~~~~--------~~~~~~~~~D~~   63 (200)
                      .|+++|..++|||||+.+|+...-  ....      ....      +-+.   .......        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            589999999999999999975321  1000      0000      0000   0011222        346889999999


Q ss_pred             CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      |+..+......++..+|++++|+|+.++...+. ...+.....        ...|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~--------~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK--------ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH--------cCCCEEEEEECCCcc
Confidence            999999999999999999999999998765544 222322222        337999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.69  E-value=3.8e-16  Score=124.54  Aligned_cols=155  Identities=19%  Similarity=0.092  Sum_probs=95.2

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCC--CCC-----------cCCC------------c------ccce-eEEEE
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTF--RES-----------YIPT------------I------EDTY-RQVIS   49 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~-----------~~~~------------~------~~~~-~~~~~   49 (200)
                      +++...++|+++|.+++|||||+.+|+...-  ...           ...+            .      +-+. .....
T Consensus        22 ~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~  101 (474)
T PRK05124         22 QQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY  101 (474)
T ss_pred             ccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE
Confidence            3456779999999999999999999975321  110           0000            0      0000 11122


Q ss_pred             eCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          50 CNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        50 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      +.....++.|+||||+..+.......+..+|++++|+|+..+..-.... .+. +....      ...|++|++||+|+.
T Consensus       102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~-~~~-l~~~l------g~~~iIvvvNKiD~~  173 (474)
T PRK05124        102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR-HSF-IATLL------GIKHLVVAVNKMDLV  173 (474)
T ss_pred             eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH-HHH-HHHHh------CCCceEEEEEeeccc
Confidence            3344568999999998887665566678999999999998653222212 222 22222      124789999999987


Q ss_pred             cccccCHHHH----HHHHHHh----CCcEEEecccCCCcHHHH
Q psy8700         130 ENREVSAAEG----EAEAKMW----GCHFMETSAKTNHNVKEL  164 (200)
Q Consensus       130 ~~~~~~~~~~----~~~~~~~----~~~~~~vSa~~~~~i~~~  164 (200)
                      +..+......    ..+....    ..+++++||++|.|+.++
T Consensus       174 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        174 DYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             cchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            4322111111    1112222    368999999999998764

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.68  E-value=1.1e-15  Score=100.07  Aligned_cols=105  Identities=26%  Similarity=0.313  Sum_probs=66.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChh---------hHhhccc
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPA---------MQRLSIS   77 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---------~~~~~~~   77 (200)
                      +|+++|.+|+|||||+|+|++....  ....+++.......+..++.  .+.++||||......         .....+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6999999999999999999985431  12222222222223334444  567999999754311         1223447


Q ss_pred             cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700          78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK  125 (200)
Q Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  125 (200)
                      .+|++++|+|..++.. +....++..+.         ...|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~---------~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK---------NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH---------TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh---------cCCCEEEEEcC
Confidence            8999999999877322 23334434442         33899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.68  E-value=1.1e-15  Score=122.97  Aligned_cols=117  Identities=17%  Similarity=0.235  Sum_probs=79.4

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCC--CCC-CcC------C-C----------cccce-eEEEEeCCcEEEEEEEeCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE-SYI------P-T----------IEDTY-RQVISCNKNICTLQITDTT   63 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~-~~~------~-~----------~~~~~-~~~~~~~~~~~~~~~~D~~   63 (200)
                      ....+|+++|.+++|||||+++|+...  ... ...      . +          .+.+. .....++...+.+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            456799999999999999999997411  100 000      0 0          00011 1223344455789999999


Q ss_pred             CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      |+..+.......+..+|++++|+|+++.... ....+|.....        .+.|+++++||+|+..
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--------~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL--------RDTPIFTFINKLDRDG  145 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh--------cCCCEEEEEECCcccc
Confidence            9998888778888999999999999875432 23444443332        3489999999999753

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.67  E-value=3.6e-15  Score=106.39  Aligned_cols=160  Identities=21%  Similarity=0.247  Sum_probs=98.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcC---CCcccceeEEEEeCCcEEEEEEEeCCCCCCCh--------hh---Hh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYI---PTIEDTYRQVISCNKNICTLQITDTTGSHQFP--------AM---QR   73 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~---~~   73 (200)
                      ++|+++|.+|+|||||+|++++........   +.+...........+  ..+.++||||.....        .+   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999865422211   111111122222333  489999999965431        11   11


Q ss_pred             hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC------HHHHHHHHHHhC
Q psy8700          74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS------AAEGEAEAKMWG  147 (200)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~  147 (200)
                      ......+++++|+++.. .+- .....+..+....+   ...-.++++++|+.|........      ..........++
T Consensus        79 ~~~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg---~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~  153 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTE-EEEQAVETLQELFG---EKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG  153 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhC---hHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence            12356899999999876 222 22344444555432   11225889999999976543211      123344455556


Q ss_pred             CcEEEec-----ccCCCcHHHHHHHHHHHHhc
Q psy8700         148 CHFMETS-----AKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       148 ~~~~~vS-----a~~~~~i~~~~~~i~~~~~~  174 (200)
                      -.++..+     +..+.++.++++.|.+++.+
T Consensus       154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            5665554     45577899999999998876

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.66  E-value=3.6e-16  Score=116.76  Aligned_cols=142  Identities=20%  Similarity=0.263  Sum_probs=87.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcC------CCc----------ccc-eeEEEEeCCcEEEEEEEeCCCCCCChhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYI------PTI----------EDT-YRQVISCNKNICTLQITDTTGSHQFPAM   71 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~------~~~----------~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~   71 (200)
                      +|+++|.+|+|||||+++|+...-.....      .+.          ..+ ......+......+.+|||||...+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            48999999999999999997532110000      000          000 0011122223468899999998877777


Q ss_pred             HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEE
Q psy8700          72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFM  151 (200)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  151 (200)
                      ....+..+|++++|+|.++...... ...|..+..        ...|+++++||+|+.....  ......+....+.+++
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~--------~~~p~iivvNK~D~~~~~~--~~~~~~l~~~~~~~~~  149 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE--------AGIPRIIFINKMDRERADF--DKTLAALQEAFGRPVV  149 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH--------cCCCEEEEEECCccCCCCH--HHHHHHHHHHhCCCeE
Confidence            8888999999999999988655433 333433332        3479999999999875421  2222334444555444


Q ss_pred             Ee--cccCCCcH
Q psy8700         152 ET--SAKTNHNV  161 (200)
Q Consensus       152 ~v--Sa~~~~~i  161 (200)
                      .+  ....+.++
T Consensus       150 ~~~ip~~~~~~~  161 (268)
T cd04170         150 PLQLPIGEGDDF  161 (268)
T ss_pred             EEEecccCCCce
Confidence            33  34444443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK00049 elongation factor Tu; Reviewed

Probab=99.66  E-value=4.2e-15  Score=116.46  Aligned_cols=161  Identities=16%  Similarity=0.162  Sum_probs=99.7

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCC---CCcC--------C-C-cccce--eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR---ESYI--------P-T-IEDTY--RQVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~---~~~~--------~-~-~~~~~--~~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      .+...++|+++|..++|||||+++|++....   ....        + . ..+.+  .....+.....++.++||||+.+
T Consensus         8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence            3456799999999999999999999863110   0000        0 0 01111  11223333456789999999887


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEE-EEeeCCCCCcccccCHH---HHHHHH
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM-LVGNKCDETENREVSAA---EGEAEA  143 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~---~~~~~~  143 (200)
                      +.......+..+|++++|+|+.++..- .....+..+..        ...|++ +++||+|+.+..+....   +...+.
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~--------~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l  158 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ--------VGVPYIVVFLNKCDMVDDEELLELVEMEVRELL  158 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHH--------cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHH
Confidence            777677778899999999999875332 22333433333        226876 58999999753221111   111222


Q ss_pred             HHh-----CCcEEEecccCCC----------cHHHHHHHHHHHH
Q psy8700         144 KMW-----GCHFMETSAKTNH----------NVKELFAELLNLE  172 (200)
Q Consensus       144 ~~~-----~~~~~~vSa~~~~----------~i~~~~~~i~~~~  172 (200)
                      ...     ..+++.+||+++.          ++..+++.|.+.+
T Consensus       159 ~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             HhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            221     3689999999875          4567777776654

>cd01850 CDC_Septin CDC/Septin

Probab=99.66  E-value=1.9e-15  Score=112.78  Aligned_cols=143  Identities=19%  Similarity=0.232  Sum_probs=87.0

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCc----------CCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChh----
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESY----------IPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPA----   70 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----   70 (200)
                      -.++|+++|.+|+|||||+|+|++..+....          .++.. .........++..+.+.+|||||......    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            4689999999999999999999987654321          22221 12223334466678999999999433210    


Q ss_pred             ---h-------------------Hhhccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700          71 ---M-------------------QRLSIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC  126 (200)
Q Consensus        71 ---~-------------------~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  126 (200)
                         +                   ....+.  ++|+++++++.+.. .+....  +..+....      ...|+++|+||+
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D--~~~lk~l~------~~v~vi~VinK~  153 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLD--IEFMKRLS------KRVNIIPVIAKA  153 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHH--HHHHHHHh------ccCCEEEEEECC
Confidence               0                   002222  36788888876642 121111  22233333      247999999999


Q ss_pred             CCCcccccC--HHHHHHHHHHhCCcEEEecccC
Q psy8700         127 DETENREVS--AAEGEAEAKMWGCHFMETSAKT  157 (200)
Q Consensus       127 Dl~~~~~~~--~~~~~~~~~~~~~~~~~vSa~~  157 (200)
                      |+....+..  ...........++++|......
T Consensus       154 D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         154 DTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            997643322  2334555667788888776543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.66  E-value=2.5e-15  Score=111.75  Aligned_cols=113  Identities=18%  Similarity=0.227  Sum_probs=75.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCC-CC------------cCC---Ccccce-eEEEEeCCcEEEEEEEeCCCCCCChhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFR-ES------------YIP---TIEDTY-RQVISCNKNICTLQITDTTGSHQFPAM   71 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~-~~------------~~~---~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~   71 (200)
                      +|+++|.+++|||||+++|+...-. ..            +.+   ..+.+. .....+.-...++.+|||||...+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            4899999999999999999742110 00            000   000000 111222223468899999999888888


Q ss_pred             HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      ....++.+|++++|+|+.+...-.. ...+..+..        ...|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~--------~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR--------YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH--------cCCCEEEEEECCCCCC
Confidence            8889999999999999987543332 344444433        3379999999999875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.66  E-value=1.8e-15  Score=109.22  Aligned_cols=162  Identities=19%  Similarity=0.222  Sum_probs=106.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCc-CCCcccce-eEEEEeCCcEEEEEEEeCCCCCC-------ChhhHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESY-IPTIEDTY-RQVISCNKNICTLQITDTTGSHQ-------FPAMQRL   74 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~   74 (200)
                      +..+++|+++|..|+|||||+|+|..+...+.. .+...+.. .-....+++  .+.+||+||..+       ++.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhhHHHHHHHHH
Confidence            446789999999999999999999975543221 22222111 111122333  699999999654       6677788


Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc-------ccCHHHHHHHH----
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR-------EVSAAEGEAEA----  143 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~~----  143 (200)
                      ++.+.|.+++++++.|+.=--+...+...+...       .+.++++++|++|...+-       .........+.    
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~-------~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~  186 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDEDFLRDVIILG-------LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA  186 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCHHHHHHHHHhc-------cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH
Confidence            899999999999999876433333433333332       337999999999975430       01111111111    


Q ss_pred             ----HHh-C-CcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         144 ----KMW-G-CHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       144 ----~~~-~-~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                          +.. . -|++.+|...+.|++++...++..+..
T Consensus       187 ~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         187 EALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence                111 1 278889999999999999999998753

>KOG0077|consensus

Probab=99.66  E-value=6.9e-16  Score=102.76  Aligned_cols=158  Identities=15%  Similarity=0.180  Sum_probs=116.5

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +.-|++++|-.|+|||||++.|..+... .+.||...+.+..   .-....++-.|.+|+..-+..+..|+..++++++.
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE~l---~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEEL---SIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChHHh---eecCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            4569999999999999999999887753 3455554443322   22345789999999998899999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH-HHHHHh-----------C---CcE
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE-AEAKMW-----------G---CHF  150 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~~-----------~---~~~  150 (200)
                      +|+.|.+.+......+..+...-    .....|++|.+||+|.+.....++.... .+.+..           +   ..+
T Consensus        95 vda~d~er~~es~~eld~ll~~e----~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev  170 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDE----SLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV  170 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHH----HHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence            99999999999888877776655    3577999999999998876532222111 111111           1   136


Q ss_pred             EEecccCCCcHHHHHHHHHHH
Q psy8700         151 METSAKTNHNVKELFAELLNL  171 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~~  171 (200)
                      |.||...+.+--+.|.|+..+
T Consensus       171 fmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  171 FMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEEEccCccceeeeehhhh
Confidence            778888888877777776654

>PRK13351 elongation factor G; Reviewed

Probab=99.65  E-value=1.6e-15  Score=126.62  Aligned_cols=117  Identities=18%  Similarity=0.243  Sum_probs=81.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCC--------CCC--c---CC---Ccccce-eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF--------RES--Y---IP---TIEDTY-RQVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~--------~~~--~---~~---~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      +...+|+++|..++|||||+++|+...-        ...  .   .+   ....+. .....+......+.+|||||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            4567999999999999999999985321        000  0   00   000001 11112233456899999999999


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      +......+++.+|++++|+|.++....... ..|..+..        ...|+++++||+|+..
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~--------~~~p~iiviNK~D~~~  139 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR--------YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh--------cCCCEEEEEECCCCCC
Confidence            888889999999999999999987665543 33433332        3479999999999864

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.65  E-value=1.2e-15  Score=119.83  Aligned_cols=148  Identities=20%  Similarity=0.132  Sum_probs=90.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC--CCCC-----------cCCC------------c------ccce-eEEEEeCCcEE
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGT--FRES-----------YIPT------------I------EDTY-RQVISCNKNIC   55 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~--~~~~-----------~~~~------------~------~~~~-~~~~~~~~~~~   55 (200)
                      ++|+++|..++|||||+.+|+...  ....           ...+            .      +-+. .....+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            589999999999999999997432  1110           0000            0      0000 01122233445


Q ss_pred             EEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC
Q psy8700          56 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS  135 (200)
Q Consensus        56 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  135 (200)
                      ++.|+||||+..+.......+..+|++++|+|+..+...+.. ..+..+.. .      ...++++++||+|+.+..+..
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~-~------~~~~iivviNK~D~~~~~~~~  152 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASL-L------GIRHVVLAVNKMDLVDYDEEV  152 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHH-c------CCCcEEEEEEecccccchHHH
Confidence            889999999988876666778899999999999876433222 22222222 2      124688999999986532111


Q ss_pred             H----HHHHHHHHHhC---CcEEEecccCCCcHHH
Q psy8700         136 A----AEGEAEAKMWG---CHFMETSAKTNHNVKE  163 (200)
Q Consensus       136 ~----~~~~~~~~~~~---~~~~~vSa~~~~~i~~  163 (200)
                      .    .+...+....+   ++++++||++|.|+.+
T Consensus       153 ~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       153 FENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            1    11111222233   4799999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN03127 Elongation factor Tu; Provisional

Probab=99.64  E-value=1.4e-14  Score=114.77  Aligned_cols=161  Identities=15%  Similarity=0.141  Sum_probs=97.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhC------CCCCCc--CCC-----cccce--eEEEEeCCcEEEEEEEeCCCCCCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKG------TFRESY--IPT-----IEDTY--RQVISCNKNICTLQITDTTGSHQF   68 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~------~~~~~~--~~~-----~~~~~--~~~~~~~~~~~~~~~~D~~G~~~~   68 (200)
                      +-+.++|+++|..++|||||+++|.+.      ...-.+  ...     ..+.+  .....++....++.|+||||+..+
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            445689999999999999999999632      100000  000     01111  112334445568899999999888


Q ss_pred             hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCHH---HHHHHHH
Q psy8700          69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSAA---EGEAEAK  144 (200)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~---~~~~~~~  144 (200)
                      .......+..+|++++|+|+.++..-+. ...+..+..        ...| +++++||+|+.+..+....   +...+..
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~--------~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~  208 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ--------VGVPSLVVFLNKVDVVDDEELLELVEMELRELLS  208 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH--------cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence            7766666778999999999986533222 333333332        2367 4788999999753321111   1112222


Q ss_pred             Hh-----CCcEEEeccc---CCCc-------HHHHHHHHHHHHh
Q psy8700         145 MW-----GCHFMETSAK---TNHN-------VKELFAELLNLEK  173 (200)
Q Consensus       145 ~~-----~~~~~~vSa~---~~~~-------i~~~~~~i~~~~~  173 (200)
                      ..     .++++.+|+.   ++.|       +..+++.+.+.+.
T Consensus       209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            21     2578888875   4544       6777887777653

>TIGR00503 prfC peptide chain release factor 3

Probab=99.64  E-value=9.8e-15  Score=117.61  Aligned_cols=117  Identities=15%  Similarity=0.220  Sum_probs=79.4

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCC--CCC-CcC-------CCc----------ccce-eEEEEeCCcEEEEEEEeC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE-SYI-------PTI----------EDTY-RQVISCNKNICTLQITDT   62 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~-~~~-------~~~----------~~~~-~~~~~~~~~~~~~~~~D~   62 (200)
                      -.+..+|+++|.+++|||||+++|+...  ... ...       .+.          +.+. .....++...+.+.+|||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT   87 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT   87 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence            3566799999999999999999986411  100 000       000          1111 122344556679999999


Q ss_pred             CCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          63 TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        63 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      ||+..+.......+..+|++++|+|..+... .....+|.....        .+.|+++++||+|+.
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--------~~~PiivviNKiD~~  145 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--------RDTPIFTFMNKLDRD  145 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--------cCCCEEEEEECcccc
Confidence            9998887777778889999999999987522 223444543332        347999999999974

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.64  E-value=5.1e-15  Score=117.25  Aligned_cols=154  Identities=16%  Similarity=0.166  Sum_probs=98.2

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCC--CCCC----c-----------------CCCcc------cce-eEEEEeC
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRES----Y-----------------IPTIE------DTY-RQVISCN   51 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~----~-----------------~~~~~------~~~-~~~~~~~   51 (200)
                      ..+-+.++|+++|..++|||||+.+|+...  ....    +                 ....+      -+. .....+.
T Consensus         2 ~~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~   81 (447)
T PLN00043          2 GKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE   81 (447)
T ss_pred             CCCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec
Confidence            445567899999999999999999987421  1000    0                 00000      000 1122344


Q ss_pred             CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhH---H---HHHHHHHHHHHHHhCCCCCCCCC-cEEEEee
Q psy8700          52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQS---L---EELRPIWEVIRETKGGANELASI-PIMLVGN  124 (200)
Q Consensus        52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~n  124 (200)
                      .....+.++|+||+.+|.......+..+|++++|+|+++..-   +   ......+..+...        .. +++|++|
T Consensus        82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~--------gi~~iIV~vN  153 (447)
T PLN00043         82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTL--------GVKQMICCCN  153 (447)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHc--------CCCcEEEEEE
Confidence            556789999999999999988999999999999999987421   0   2333333333222        24 5788999


Q ss_pred             CCCCCccc----cc--CHHHHHHHHHHhC-----CcEEEecccCCCcHHH
Q psy8700         125 KCDETENR----EV--SAAEGEAEAKMWG-----CHFMETSAKTNHNVKE  163 (200)
Q Consensus       125 K~Dl~~~~----~~--~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~  163 (200)
                      |+|+....    ..  ...+...+.+..+     ++|+++||++|+|+.+
T Consensus       154 KmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        154 KMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             cccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            99976211    00  1122333444444     5799999999999854

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.64  E-value=4e-15  Score=117.69  Aligned_cols=164  Identities=13%  Similarity=0.047  Sum_probs=102.8

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCC---Cc----CCCcccceeE----------EE--EeC-------------
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE---SY----IPTIEDTYRQ----------VI--SCN-------------   51 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~---~~----~~~~~~~~~~----------~~--~~~-------------   51 (200)
                      +...+.|+++|....|||||+.+|.+.....   ..    ....+.....          ..  ...             
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            4567899999999999999999998632210   00    0000110000          00  000             


Q ss_pred             ---CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          52 ---KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        52 ---~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                         .....+.|+|+||++.+.......+..+|++++|+|+.++....+....+..+ ...      .-.|++|++||+|+
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l------gi~~iIVvlNKiDl  183 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM------KLKHIIILQNKIDL  183 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc------CCCcEEEEEecccc
Confidence               01247899999999888777777788999999999998742112222333222 222      22478999999999


Q ss_pred             CcccccCHH--HHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         129 TENREVSAA--EGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       129 ~~~~~~~~~--~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      .+.......  +...+...   .+.+++++||++|.|++.+++.|.+.+..
T Consensus       184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            753322111  11111111   25689999999999999999999976643

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.63  E-value=6.3e-15  Score=116.82  Aligned_cols=155  Identities=18%  Similarity=0.158  Sum_probs=97.1

Q ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhC--CCCCCc---------------------CCCc----c-cce--eEEEEe
Q psy8700           1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKG--TFRESY---------------------IPTI----E-DTY--RQVISC   50 (200)
Q Consensus         1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~--~~~~~~---------------------~~~~----~-~~~--~~~~~~   50 (200)
                      |+.+-+.++|+++|..++|||||+.+|+..  ......                     ....    . +.+  .....+
T Consensus         1 ~~~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~   80 (446)
T PTZ00141          1 MGKEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF   80 (446)
T ss_pred             CCCCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE
Confidence            455677899999999999999999999752  111000                     0000    0 000  112233


Q ss_pred             CCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhH------HHHHHHHHHHHHHHhCCCCCCCCCc-EEEEe
Q psy8700          51 NKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQS------LEELRPIWEVIRETKGGANELASIP-IMLVG  123 (200)
Q Consensus        51 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~  123 (200)
                      +.....+.|+||||+.+|.......+..+|++++|+|+.++..      -.+....|..+....        .| ++|++
T Consensus        81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~g--------i~~iiv~v  152 (446)
T PTZ00141         81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLG--------VKQMIVCI  152 (446)
T ss_pred             ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcC--------CCeEEEEE
Confidence            4455789999999999988888888889999999999987531      023333343333322        45 67999


Q ss_pred             eCCCCCc----ccccCH--HHHHHHHHHh-----CCcEEEecccCCCcHHH
Q psy8700         124 NKCDETE----NREVSA--AEGEAEAKMW-----GCHFMETSAKTNHNVKE  163 (200)
Q Consensus       124 nK~Dl~~----~~~~~~--~~~~~~~~~~-----~~~~~~vSa~~~~~i~~  163 (200)
                      ||+|...    ......  .+........     .++++++|+.+|+|+.+
T Consensus       153 NKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        153 NKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             EccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            9999532    111111  1122222222     35799999999999864

>PRK09866 hypothetical protein; Provisional

Probab=99.63  E-value=2.8e-14  Score=114.55  Aligned_cols=109  Identities=20%  Similarity=0.224  Sum_probs=71.9

Q ss_pred             EEEEEEeCCCCCCC-----hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          55 CTLQITDTTGSHQF-----PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        55 ~~~~~~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      .++.|+||||....     .......+..+|+++||+|.....+..+ ......+....      ...|+++|+||+|+.
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~------K~~PVILVVNKIDl~  302 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG------QSVPLYVLVNKFDQQ  302 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC------CCCCEEEEEEcccCC
Confidence            46789999997642     2234457889999999999987543333 22333333221      225999999999986


Q ss_pred             cccccCHHHHHHHHH-H---hC---CcEEEecccCCCcHHHHHHHHHH
Q psy8700         130 ENREVSAAEGEAEAK-M---WG---CHFMETSAKTNHNVKELFAELLN  170 (200)
Q Consensus       130 ~~~~~~~~~~~~~~~-~---~~---~~~~~vSa~~~~~i~~~~~~i~~  170 (200)
                      +...........+.. .   .+   ..+|++||+.|.|++.+++.|..
T Consensus       303 dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        303 DRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            433222222222221 1   12   26999999999999999999988

>PLN03126 Elongation factor Tu; Provisional

Probab=99.63  E-value=6.1e-15  Score=117.37  Aligned_cols=148  Identities=13%  Similarity=0.127  Sum_probs=92.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCC------CCCc------CCCc-ccce--eEEEEeCCcEEEEEEEeCCCCCCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTF------RESY------IPTI-EDTY--RQVISCNKNICTLQITDTTGSHQF   68 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~------~~~~------~~~~-~~~~--~~~~~~~~~~~~~~~~D~~G~~~~   68 (200)
                      +.+.++|+++|.+++|||||+++|+...-      ...+      .... .+.+  .....++.....+.++|+||+..|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            44568999999999999999999985211      0000      0000 0111  112223334458899999999888


Q ss_pred             hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCHH---HHHHHHH
Q psy8700          69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSAA---EGEAEAK  144 (200)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~---~~~~~~~  144 (200)
                      .......+..+|++++|+|+.+...-+. ..++..+...        ..| +++++||+|+.+..+....   +...+..
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~--------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~  228 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV--------GVPNMVVFLNKQDQVDDEELLELVELEVRELLS  228 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--------CCCeEEEEEecccccCHHHHHHHHHHHHHHHHH
Confidence            7777777788999999999987643333 3444333332        266 7789999999753322111   2222222


Q ss_pred             Hh-----CCcEEEecccCCCc
Q psy8700         145 MW-----GCHFMETSAKTNHN  160 (200)
Q Consensus       145 ~~-----~~~~~~vSa~~~~~  160 (200)
                      ..     ..+++.+|+.++.+
T Consensus       229 ~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        229 SYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             hcCCCcCcceEEEEEcccccc
Confidence            22     45899999988854

>cd00066 G-alpha G protein alpha subunit

Probab=99.62  E-value=1.5e-14  Score=110.19  Aligned_cols=120  Identities=17%  Similarity=0.147  Sum_probs=85.2

Q ss_pred             cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCCh----------hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700          53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSR----------QSLEELRPIWEVIRETKGGANELASIPIMLV  122 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  122 (200)
                      ..+.+.+||++|+...+..|..++.++++++||+|+++-          ..+......+..+....    ...+.|++++
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~----~~~~~pill~  234 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR----WFANTSIILF  234 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc----cccCCCEEEE
Confidence            346788999999999999999999999999999999873          45555555555555443    2467899999


Q ss_pred             eeCCCCCccc----------------ccCHHHHHHHHH-----H-----hCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         123 GNKCDETENR----------------EVSAAEGEAEAK-----M-----WGCHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       123 ~nK~Dl~~~~----------------~~~~~~~~~~~~-----~-----~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      +||.|+...+                ......+..+..     .     ..+..+.++|.+..++..+|+.+.+.+...+
T Consensus       235 ~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         235 LNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             ccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            9999963221                111122222211     1     1234566889999999999999998876544

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.62  E-value=2e-14  Score=112.01  Aligned_cols=83  Identities=18%  Similarity=0.194  Sum_probs=55.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEE---------------------eC-CcEEEEEEEeCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVIS---------------------CN-KNICTLQITDTT   63 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~D~~   63 (200)
                      .++|+++|.||+|||||+|+|++..... .|..++-........                     .+ .....+++||+|
T Consensus         1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a   80 (396)
T PRK09602          1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA   80 (396)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence            3689999999999999999999866532 222111111111111                     11 123679999999


Q ss_pred             CC----CCChhhHhhc---cccCCEEEEEeeCC
Q psy8700          64 GS----HQFPAMQRLS---ISKGHAFILVYSCT   89 (200)
Q Consensus        64 G~----~~~~~~~~~~---~~~~~~~i~v~d~~   89 (200)
                      |.    +....+...+   ++++|++++|+|+.
T Consensus        81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            95    3344555556   78899999999996

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.61  E-value=2.2e-15  Score=104.38  Aligned_cols=119  Identities=18%  Similarity=0.297  Sum_probs=72.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEe-CCcEEEEEEEeCCCCCCChhhHhh---ccccCCEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISC-NKNICTLQITDTTGSHQFPAMQRL---SISKGHAF   82 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~---~~~~~~~~   82 (200)
                      .-.|+++|+.|||||+|+.+|..+...++..+..+..   ...+ ......+.++|+||+.+.+.....   +...+.++
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            4568999999999999999999986544443332111   1111 223347999999999987764444   47889999


Q ss_pred             EEEeeCCC-hhHHHHHHHHH-HHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700          83 ILVYSCTS-RQSLEELRPIW-EVIRETKGGANELASIPIMLVGNKCDETEN  131 (200)
Q Consensus        83 i~v~d~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  131 (200)
                      |||+|.+. ...+.....++ ..+.....   .....|++|+.||.|+...
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~---~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEV---QKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHC---CTT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhh---ccCCCCEEEEEeCcccccc
Confidence            99999974 33444444443 33333332   2467899999999998653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.61  E-value=1.1e-14  Score=120.57  Aligned_cols=152  Identities=19%  Similarity=0.124  Sum_probs=91.8

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCC--CCC---------cCCCc--c-c-----------------ce-eEEEEeC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTF--RES---------YIPTI--E-D-----------------TY-RQVISCN   51 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~---------~~~~~--~-~-----------------~~-~~~~~~~   51 (200)
                      ....++|+++|.+++|||||+++|+...-  ...         .....  + .                 +. .....+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            34568999999999999999999986321  100         00000  0 0                 00 0011222


Q ss_pred             CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700          52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN  131 (200)
Q Consensus        52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  131 (200)
                      ....++.|+||||+..+.......+..+|++++|+|+.++..-+. ...+..+.. .      ...|++|++||+|+.+.
T Consensus       101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~-~------~~~~iivvvNK~D~~~~  172 (632)
T PRK05506        101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASL-L------GIRHVVLAVNKMDLVDY  172 (632)
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHH-h------CCCeEEEEEEecccccc
Confidence            334578899999988776555566788999999999976543222 222222222 2      22578899999998642


Q ss_pred             ccc--CH--HHHHHHHHHhC---CcEEEecccCCCcHHH
Q psy8700         132 REV--SA--AEGEAEAKMWG---CHFMETSAKTNHNVKE  163 (200)
Q Consensus       132 ~~~--~~--~~~~~~~~~~~---~~~~~vSa~~~~~i~~  163 (200)
                      .+.  ..  .+...+....+   .+++++||++|.|+.+
T Consensus       173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            211  11  11111222333   4699999999999874

>KOG0462|consensus

Probab=99.59  E-value=3.1e-14  Score=111.28  Aligned_cols=163  Identities=19%  Similarity=0.160  Sum_probs=116.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCC--CCC-----C----------cCCCcccceeEEEEeCCcEEEEEEEeCCCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE-----S----------YIPTIEDTYRQVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      ++--+++++....-|||||..+|+.-.  ..+     +          ..-|.-.......+.+++.+.+.++||||+.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            445578899999999999999997522  111     0          01111111222333457789999999999999


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH-HHHHHHHHHh
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA-AEGEAEAKMW  146 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~  146 (200)
                      +.......+..++++++|+|+..+-.-+.+..++..+.         .+..+|.|+||+|++..+.... .+........
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe---------~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~  208 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE---------AGLAIIPVLNKIDLPSADPERVENQLFELFDIP  208 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH---------cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC
Confidence            99988899999999999999998776666666664444         3367899999999987653222 2222333334


Q ss_pred             CCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         147 GCHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       147 ~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      ..+.+.+||+.|.|+.++++.|++.+....
T Consensus       209 ~~~~i~vSAK~G~~v~~lL~AII~rVPpP~  238 (650)
T KOG0462|consen  209 PAEVIYVSAKTGLNVEELLEAIIRRVPPPK  238 (650)
T ss_pred             ccceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence            458999999999999999999999886543

>smart00275 G_alpha G protein alpha subunit

Probab=99.58  E-value=8.4e-15  Score=112.33  Aligned_cols=119  Identities=17%  Similarity=0.167  Sum_probs=83.7

Q ss_pred             EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC----------hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEe
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS----------RQSLEELRPIWEVIRETKGGANELASIPIMLVG  123 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  123 (200)
                      ...+.+||++|+...+..|..++.++++++||+|+++          ...+......+..+....    ...+.|++|++
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~----~~~~~piil~~  258 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR----WFANTSIILFL  258 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc----cccCCcEEEEE
Confidence            3567899999999999999999999999999999996          234555555555555433    35678999999


Q ss_pred             eCCCCCccc--------------c-cCHHHHHHHH-----HHh------CCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         124 NKCDETENR--------------E-VSAAEGEAEA-----KMW------GCHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       124 nK~Dl~~~~--------------~-~~~~~~~~~~-----~~~------~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      ||.|+....              . ........+.     ...      .+..+.++|.+-.++..+|+.+.+.+..++
T Consensus       259 NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      259 NKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             ecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            999974321              0 0111222221     111      134566889999999999999988876554

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG1191|consensus

Probab=99.58  E-value=1.8e-14  Score=111.42  Aligned_cols=167  Identities=22%  Similarity=0.283  Sum_probs=105.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE--EEEeCCcEEEEEEEeCCCCCC-Ch--------hhHh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNICTLQITDTTGSHQ-FP--------AMQR   73 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~G~~~-~~--------~~~~   73 (200)
                      ...++|+++|+||+|||||+|.|.....  ..++..+++++.  ...++-..+.+.+.||+|.-+ ..        ....
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence            3468999999999999999999998664  445555555543  333344456899999999544 11        2333


Q ss_pred             hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCC----CCCCCCcEEEEeeCCCCCcc-cccCHHHHHHHHHHh--
Q psy8700          74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGA----NELASIPIMLVGNKCDETEN-REVSAAEGEAEAKMW--  146 (200)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~--  146 (200)
                      ..++.+|++++|+|+...+.-+.+ .....+.......    +.....|++++.||.|+... .+.... ...+....  
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~-~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~  421 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDL-KIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGR  421 (531)
T ss_pred             HHHhhcCEEEEEecccccccccch-HHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccC
Confidence            466679999999999543322222 2222222222111    12345799999999999765 222211 11112211  


Q ss_pred             -CCc-EEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         147 -GCH-FMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       147 -~~~-~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                       ..+ ..++|+++++|+..+...+.+.+...
T Consensus       422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  422 SVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             cccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence             234 44599999999999999998877543

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=2.4e-13  Score=106.57  Aligned_cols=159  Identities=24%  Similarity=0.295  Sum_probs=111.8

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeC-CcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCN-KNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ...=+.++|...-|||||+.++-..+.....-..+.+.. .+.+..+ +....+.|+||||++.|..++..-.+-+|.++
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            455688999999999999999987665444333333222 3344433 13347999999999999999988888899999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH------HHHhC--CcEEEecc
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE------AKMWG--CHFMETSA  155 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~--~~~~~vSa  155 (200)
                      +|++++|.-.-+.++.    +....     ..+.|++|++||+|.++.+..  ....++      ...++  ..++++||
T Consensus        84 LVVa~dDGv~pQTiEA----I~hak-----~a~vP~iVAiNKiDk~~~np~--~v~~el~~~gl~~E~~gg~v~~VpvSA  152 (509)
T COG0532          84 LVVAADDGVMPQTIEA----INHAK-----AAGVPIVVAINKIDKPEANPD--KVKQELQEYGLVPEEWGGDVIFVPVSA  152 (509)
T ss_pred             EEEEccCCcchhHHHH----HHHHH-----HCCCCEEEEEecccCCCCCHH--HHHHHHHHcCCCHhhcCCceEEEEeec
Confidence            9999998654444333    33333     255999999999999854321  111111      12232  36999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcc
Q psy8700         156 KTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ++|.|+.++++.+.-...-.
T Consensus       153 ~tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         153 KTGEGIDELLELILLLAEVL  172 (509)
T ss_pred             cCCCCHHHHHHHHHHHHHHH
Confidence            99999999999988766433

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.57  E-value=5.1e-14  Score=106.85  Aligned_cols=114  Identities=17%  Similarity=0.213  Sum_probs=71.3

Q ss_pred             EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE  133 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  133 (200)
                      .+.+.|+||+|.......   ....+|.++++.+...++.++...   ..+.+          ..-++|+||+|+.+...
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E----------~aDIiVVNKaDl~~~~~  211 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME----------LADLIVINKADGDNKTA  211 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh----------hhheEEeehhcccchhH
Confidence            468899999996532222   455799999997645554443322   21222          22389999999875432


Q ss_pred             cCH--HHHHHHHHH-------hCCcEEEecccCCCcHHHHHHHHHHHHhccchhHHHhh
Q psy8700         134 VSA--AEGEAEAKM-------WGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEK  183 (200)
Q Consensus       134 ~~~--~~~~~~~~~-------~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~~~~~  183 (200)
                      ...  .+.......       +..+++.+||+++.|++++++.|.+.+........+..
T Consensus       212 a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~l~~  270 (332)
T PRK09435        212 ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGEFAA  270 (332)
T ss_pred             HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCChHHH
Confidence            111  111111111       23589999999999999999999998765544444433

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.56  E-value=9e-14  Score=116.08  Aligned_cols=119  Identities=15%  Similarity=0.106  Sum_probs=79.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCC-C---cCC--C---------cccce--eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-S---YIP--T---------IEDTY--RQVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~---~~~--~---------~~~~~--~~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      ++.-+|+++|.+++|||||+++|+...-.. .   ...  +         ..+++  .....+.-...++.+|||||+..
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   87 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD   87 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence            345699999999999999999997422100 0   000  0         00111  11112222346899999999998


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR  132 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  132 (200)
                      +.......++.+|++++|+|+.+....+. ..+|..+..        ...|+++++||+|+.+..
T Consensus        88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~--------~~~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        88 FTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANR--------YEVPRIAFVNKMDKTGAN  143 (689)
T ss_pred             hhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHH--------cCCCEEEEEECCCCCCCC
Confidence            88888889999999999999988655443 334433332        337999999999987543

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.55  E-value=2.3e-13  Score=101.55  Aligned_cols=123  Identities=16%  Similarity=0.107  Sum_probs=72.5

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCC--CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhh-------
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRL-------   74 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~-------   74 (200)
                      ..+.++|+++|.+|+||||++|++++.....  ...+............  ....+.++||||..+.......       
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            4578999999999999999999999865321  1111111111111122  3458999999997754322111       


Q ss_pred             cc--ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700          75 SI--SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN  131 (200)
Q Consensus        75 ~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  131 (200)
                      ++  ...|+++||..++.......-...+..+....+   ..--.+++|++|+.|...+
T Consensus       113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG---~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFG---KDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhh---hhhhccEEEEEECCccCCC
Confidence            11  157999999665432211122334444544443   1122578999999997643

>PRK12739 elongation factor G; Reviewed

Probab=99.55  E-value=2.2e-13  Score=113.76  Aligned_cols=117  Identities=15%  Similarity=0.201  Sum_probs=77.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCC-CCc--CCC------------cccce--eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESY--IPT------------IEDTY--RQVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~--~~~------------~~~~~--~~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      .+..+|+++|.+++|||||+++|+...-. ...  ...            ..+.+  .....+.-...++.++||||+..
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            34678999999999999999999752110 000  000            00111  01111222345899999999887


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      +.......+..+|++++|+|+.++...+. ...+..+..        ...|+++++||+|+..
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~--------~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK--------YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH--------cCCCEEEEEECCCCCC
Confidence            77778888889999999999987654333 334433333        3379999999999864

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.55  E-value=1.7e-13  Score=100.69  Aligned_cols=124  Identities=15%  Similarity=0.107  Sum_probs=73.3

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCC--cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh---hh------
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP---AM------   71 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---~~------   71 (200)
                      +.+.+++|+++|.+|+|||||+|+|++......  +.+++..........+  ...+.+|||||.....   ..      
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~--g~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD--GFKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCcCcchhhHHHHHHHHH
Confidence            457789999999999999999999998654221  2222222222222223  3578999999966541   11      


Q ss_pred             -Hhhccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700          72 -QRLSIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN  131 (200)
Q Consensus        72 -~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  131 (200)
                       ...++.  ..+++++|..++....-..-...+..+.+..+   ..--.++++|.||+|...+
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG---~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFG---PSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhC---hhhHhCEEEEEeCCccCCC
Confidence             122332  46888888766543211111234444444432   0111479999999998543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG0090|consensus

Probab=99.54  E-value=1.4e-13  Score=95.79  Aligned_cols=118  Identities=14%  Similarity=0.295  Sum_probs=81.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccc---cCCE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSIS---KGHA   81 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---~~~~   81 (200)
                      +..-.|+++|+.+||||+|+-.|..+..+..+.+..+..-  .......  .+.++|.||+.+.+.....++.   .+.+
T Consensus        36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a--~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~aka  111 (238)
T KOG0090|consen   36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEA--TYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKA  111 (238)
T ss_pred             ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeecccee--eEeecCc--ceEEEeCCCcHHHHHHHHHHcccccccee
Confidence            3446799999999999999999999876555554444221  2222223  3899999999988877777777   7899


Q ss_pred             EEEEeeCCC-hhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          82 FILVYSCTS-RQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        82 ~i~v~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      ++||+|... .....+. +.++..+.....   ....+|++|+.||.|+.
T Consensus       112 iVFVVDSa~f~k~vrdvaefLydil~~~~~---~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen  112 IVFVVDSATFLKNVRDVAEFLYDILLDSRV---KKNKPPVLIACNKQDLF  158 (238)
T ss_pred             EEEEEeccccchhhHHHHHHHHHHHHhhcc---ccCCCCEEEEecchhhh
Confidence            999999763 2223333 333344444321   24668999999999984

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.53  E-value=3.2e-13  Score=97.37  Aligned_cols=162  Identities=20%  Similarity=0.247  Sum_probs=98.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCC---CcccceeEEEEeCCcEEEEEEEeCCCCCCCh----h----hH---h
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIP---TIEDTYRQVISCNKNICTLQITDTTGSHQFP----A----MQ---R   73 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~----~~---~   73 (200)
                      ++|+++|..||||||++|.+++.........   .+..........++  ..+.++||||.....    .    +.   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            5899999999999999999998775333221   11222233334455  478999999943211    1    11   1


Q ss_pred             hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH-------HHHHHHHHHh
Q psy8700          74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA-------AEGEAEAKMW  146 (200)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-------~~~~~~~~~~  146 (200)
                      ......+++++|+.+. +-+- .-...+..+....+.   .--..++||+|..|.........       .....+.+..
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~-~~~~~l~~l~~~FG~---~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c  153 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTE-EDREVLELLQEIFGE---EIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC  153 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SH-HHHHHHHHHHHHHCG---GGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             hccCCCeEEEEEEecC-cchH-HHHHHHHHHHHHccH---HHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc
Confidence            1334579999999988 2222 234455556665541   12247899999998766543211       1133445556


Q ss_pred             CCcEEEeccc------CCCcHHHHHHHHHHHHhccc
Q psy8700         147 GCHFMETSAK------TNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       147 ~~~~~~vSa~------~~~~i~~~~~~i~~~~~~~~  176 (200)
                      +-.|+..+.+      ....+.++|+.|.+++.+..
T Consensus       154 ~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  154 GGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             TTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            7788887766      33579999999999887765

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.52  E-value=1.4e-13  Score=87.64  Aligned_cols=137  Identities=22%  Similarity=0.230  Sum_probs=94.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCC----CCChhhHhhccccCCEEE
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGS----HQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----~~~~~~~~~~~~~~~~~i   83 (200)
                      -||+++|..|+|||||.++|-+...  .|..+..      +.++.    --.+||||.    ..+..-.....+.+|.++
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~--lykKTQA------ve~~d----~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQA------VEFND----KGDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchh--hhcccce------eeccC----ccccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            3799999999999999999987443  3322221      11111    125899993    233344455677899999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVK  162 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~  162 (200)
                      +|-.++++++.-.  .-   +.       ..-..|+|=|++|+|+.+..+  ......+..+.|. ++|++|+.++.|+.
T Consensus        70 ~v~~and~~s~f~--p~---f~-------~~~~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~  135 (148)
T COG4917          70 YVHAANDPESRFP--PG---FL-------DIGVKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVE  135 (148)
T ss_pred             eeecccCccccCC--cc---cc-------cccccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHH
Confidence            9999998865211  10   11       123357999999999987443  3445566666676 89999999999999


Q ss_pred             HHHHHHHH
Q psy8700         163 ELFAELLN  170 (200)
Q Consensus       163 ~~~~~i~~  170 (200)
                      ++++.+..
T Consensus       136 ~l~~~L~~  143 (148)
T COG4917         136 ELVDYLAS  143 (148)
T ss_pred             HHHHHHHh
Confidence            99998765

>KOG1490|consensus

Probab=99.51  E-value=1.2e-13  Score=106.99  Aligned_cols=173  Identities=17%  Similarity=0.129  Sum_probs=118.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC----hhh-----Hh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCNKNICTLQITDTTGSHQF----PAM-----QR   73 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~-----~~   73 (200)
                      .++.-.++++|.|++|||||+|.+........ |.-|+-..+  ..+++-.-..++++||||.-..    +..     ..
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~--vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT  242 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLL--VGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT  242 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhh--hhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence            45667899999999999999998877553222 222221111  2233445578999999994321    111     11


Q ss_pred             hccccCCEEEEEeeCCC--hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH---HHHHHhCC
Q psy8700          74 LSISKGHAFILVYSCTS--RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE---AEAKMWGC  148 (200)
Q Consensus        74 ~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~  148 (200)
                      ...+=-.+|+|++|++.  +.++...-.++..+....      .+.|+|+|+||+|+......+.....   ......++
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF------aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v  316 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF------ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV  316 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh------cCCceEEEeecccccCccccCHHHHHHHHHHHhccCc
Confidence            11222367888889874  567777777777777766      66899999999999877666554322   23334457


Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHhccchhHHHhhh
Q psy8700         149 HFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK  184 (200)
Q Consensus       149 ~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~  184 (200)
                      +++.+|+.+..|+.++-....+.+....+...+.-+
T Consensus       317 ~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~  352 (620)
T KOG1490|consen  317 KVVQTSCVQEEGVMDVRTTACEALLAARVEQKLKSE  352 (620)
T ss_pred             eEEEecccchhceeeHHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999988877776665543

>PRK13768 GTPase; Provisional

Probab=99.50  E-value=3.3e-13  Score=99.72  Aligned_cols=113  Identities=17%  Similarity=0.204  Sum_probs=70.2

Q ss_pred             EEEEEeCCCCCCC---hhhHhhccc---c--CCEEEEEeeCCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700          56 TLQITDTTGSHQF---PAMQRLSIS---K--GHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKC  126 (200)
Q Consensus        56 ~~~~~D~~G~~~~---~~~~~~~~~---~--~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~  126 (200)
                      .+.+||+||+.+.   +..+..+++   .  .+++++++|............ ++..+....     ..+.|+++|+||+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-----~~~~~~i~v~nK~  172 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-----RLGLPQIPVLNKA  172 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-----HcCCCEEEEEEhH
Confidence            6899999997653   333332222   2  789999999965443333222 221111111     1348999999999


Q ss_pred             CCCcccccCHHHH--H------------------------HHHHHhC--CcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         127 DETENREVSAAEG--E------------------------AEAKMWG--CHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       127 Dl~~~~~~~~~~~--~------------------------~~~~~~~--~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      |+.+..+......  .                        ......+  .+++++|++++.|+++++++|.+.+.
T Consensus       173 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        173 DLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            9976543211110  0                        0111223  48899999999999999999998774

>KOG1145|consensus

Probab=99.50  E-value=1.4e-12  Score=102.30  Aligned_cols=159  Identities=21%  Similarity=0.243  Sum_probs=110.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +.+.=|-++|...-|||||+.+|-...........+.... ...+.+. ..-.+.|.||||+..|..++..-..-+|.++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            3456678999999999999999987665433333333222 1233333 2248999999999999999998888899999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH-----HHHHHHHhC-CcEEEecccC
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE-----GEAEAKMWG-CHFMETSAKT  157 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-----~~~~~~~~~-~~~~~vSa~~  157 (200)
                      +|+.++|.-.-+..+.    +....     ..+.|++|.+||+|.++........     ........| .+++++||++
T Consensus       230 LVVAadDGVmpQT~Ea----IkhAk-----~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~  300 (683)
T KOG1145|consen  230 LVVAADDGVMPQTLEA----IKHAK-----SANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT  300 (683)
T ss_pred             EEEEccCCccHhHHHH----HHHHH-----hcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence            9999998755444333    44444     3669999999999987654211110     011112222 4899999999


Q ss_pred             CCcHHHHHHHHHHHHh
Q psy8700         158 NHNVKELFAELLNLEK  173 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~~  173 (200)
                      |.|++.+-+.+.-...
T Consensus       301 g~nl~~L~eaill~Ae  316 (683)
T KOG1145|consen  301 GENLDLLEEAILLLAE  316 (683)
T ss_pred             CCChHHHHHHHHHHHH
Confidence            9999999998877653

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.49  E-value=1.9e-14  Score=103.82  Aligned_cols=166  Identities=17%  Similarity=0.203  Sum_probs=93.2

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhh---------------------------CCCCCCcCCCcccceeEEEEe-----
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVK---------------------------GTFRESYIPTIEDTYRQVISC-----   50 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~---------------------------~~~~~~~~~~~~~~~~~~~~~-----   50 (200)
                      +..+.+.|.+.|+||+|||||+++|..                           +..+-......+..|--....     
T Consensus        25 ~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lG  104 (266)
T PF03308_consen   25 HTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLG  104 (266)
T ss_dssp             GTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHH
T ss_pred             hcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCC
Confidence            345678999999999999999999853                           111101111112222111111     


Q ss_pred             -------------CCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy8700          51 -------------NKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI  117 (200)
Q Consensus        51 -------------~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (200)
                                   +...+.+.|++|.|.-.   .-.....-+|.+++|....-.+.++.+..   -+.+..+        
T Consensus       105 Gls~~t~~~v~ll~aaG~D~IiiETVGvGQ---sE~~I~~~aD~~v~v~~Pg~GD~iQ~~Ka---GimEiaD--------  170 (266)
T PF03308_consen  105 GLSRATRDAVRLLDAAGFDVIIIETVGVGQ---SEVDIADMADTVVLVLVPGLGDEIQAIKA---GIMEIAD--------  170 (266)
T ss_dssp             HHHHHHHHHHHHHHHTT-SEEEEEEESSST---HHHHHHTTSSEEEEEEESSTCCCCCTB-T---THHHH-S--------
T ss_pred             CccHhHHHHHHHHHHcCCCEEEEeCCCCCc---cHHHHHHhcCeEEEEecCCCccHHHHHhh---hhhhhcc--------
Confidence                         11335788999988332   11234556899999998776655554333   3344343        


Q ss_pred             cEEEEeeCCCCCcccccCHHHHHHHH------HHhCCcEEEecccCCCcHHHHHHHHHHHHhccchhHHHhhh
Q psy8700         118 PIMLVGNKCDETENREVSAAEGEAEA------KMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK  184 (200)
Q Consensus       118 p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~  184 (200)
                        ++|+||.|..............+.      ..+..|++.+||.++.|++++++.|.+..........++..
T Consensus       171 --i~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg~~~~r  241 (266)
T PF03308_consen  171 --IFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESGELEER  241 (266)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             --EEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcchHHHH
Confidence              999999996543321111111111      11345899999999999999999999877655555444444

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK12740 elongation factor G; Reviewed

Probab=99.48  E-value=3.9e-13  Score=112.23  Aligned_cols=109  Identities=17%  Similarity=0.226  Sum_probs=71.8

Q ss_pred             ECCCCCCHHHHHHHHhhCCCC--C--CcCC--Cc----------ccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhc
Q psy8700          13 FGAGGVGKSSLVLRFVKGTFR--E--SYIP--TI----------EDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLS   75 (200)
Q Consensus        13 ~G~~~~GKSsli~~l~~~~~~--~--~~~~--~~----------~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~   75 (200)
                      +|.+++|||||+++|+...-.  .  ....  +.          +.+. .....+....+.+.+|||||+..+.......
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            599999999999999653210  0  0000  00          0000 1111222345689999999998887788888


Q ss_pred             cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      +..+|++++|+|.++....... ..|..+..        .+.|+++|+||+|+..
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~--------~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK--------YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH--------cCCCEEEEEECCCCCC
Confidence            9999999999999886654443 33333332        3479999999999853

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.47  E-value=5.5e-13  Score=97.70  Aligned_cols=162  Identities=19%  Similarity=0.160  Sum_probs=95.9

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCC-----------CCCCcCCC----------------cccceeEEE------
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGT-----------FRESYIPT----------------IEDTYRQVI------   48 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~-----------~~~~~~~~----------------~~~~~~~~~------   48 (200)
                      |...+...|.+.|.||+|||||+..|...-           .++....+                .++.|--..      
T Consensus        46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l  125 (323)
T COG1703          46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL  125 (323)
T ss_pred             hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence            455667899999999999999999985310           00111111                111110000      


Q ss_pred             ------------EeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCC
Q psy8700          49 ------------SCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS  116 (200)
Q Consensus        49 ------------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (200)
                                  .++...+.+.|++|.|.-.-   -.....-+|.+++|.-..-.+.++.+   ..-+.+..+       
T Consensus       126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~i---K~GimEiaD-------  192 (323)
T COG1703         126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGI---KAGIMEIAD-------  192 (323)
T ss_pred             hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHH---Hhhhhhhhh-------
Confidence                        01224458889999883321   12344467888888766655544444   334444443       


Q ss_pred             CcEEEEeeCCCCCcccccCHHHH--HHH------HHHhCCcEEEecccCCCcHHHHHHHHHHHHhccchhH
Q psy8700         117 IPIMLVGNKCDETENREVSAAEG--EAE------AKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISL  179 (200)
Q Consensus       117 ~p~ivv~nK~Dl~~~~~~~~~~~--~~~------~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~  179 (200)
                         ++|+||+|..+...-.....  ...      ...+..+++.+||..|.|++++++.|.+.........
T Consensus       193 ---i~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg  260 (323)
T COG1703         193 ---IIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG  260 (323)
T ss_pred             ---eeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence               99999999654321111111  111      1234468999999999999999999999775544433

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=7e-13  Score=100.94  Aligned_cols=158  Identities=18%  Similarity=0.136  Sum_probs=99.8

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCC--CCC------------C-----cCC----------Ccccce-eEEEEeC
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE------------S-----YIP----------TIEDTY-RQVISCN   51 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~------------~-----~~~----------~~~~~~-~~~~~~~   51 (200)
                      ..+-+.++++++|...+|||||+-+|+...  +++            .     +..          ..+.+. .....++
T Consensus         2 ~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe   81 (428)
T COG5256           2 ASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE   81 (428)
T ss_pred             CCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee
Confidence            445667999999999999999999986421  110            0     000          001111 1233456


Q ss_pred             CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHH-----HHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700          52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLE-----ELRPIWEVIRETKGGANELASIPIMLVGNKC  126 (200)
Q Consensus        52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  126 (200)
                      ...+.+.++|+||+..|-.-...-+..||+.|+|+|+.+.+...     ........+....      .-...+|++||+
T Consensus        82 t~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl------Gi~~lIVavNKM  155 (428)
T COG5256          82 TDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL------GIKQLIVAVNKM  155 (428)
T ss_pred             cCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc------CCceEEEEEEcc
Confidence            66678999999998877777777888999999999999874111     1111122233333      235689999999


Q ss_pred             CCCcccccCHH----HHHHHHHHhC-----CcEEEecccCCCcHHHHH
Q psy8700         127 DETENREVSAA----EGEAEAKMWG-----CHFMETSAKTNHNVKELF  165 (200)
Q Consensus       127 Dl~~~~~~~~~----~~~~~~~~~~-----~~~~~vSa~~~~~i~~~~  165 (200)
                      |+.+-++..-.    +...+.+..|     ++|+++|+..|+|+.+.=
T Consensus       156 D~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s  203 (428)
T COG5256         156 DLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS  203 (428)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence            99863221111    1122333333     469999999999976543

>TIGR00101 ureG urease accessory protein UreG

Probab=99.46  E-value=3.6e-12  Score=90.82  Aligned_cols=102  Identities=16%  Similarity=0.076  Sum_probs=63.0

Q ss_pred             EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc
Q psy8700          55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV  134 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  134 (200)
                      ....++++.|..--..... .  -++.++.|+|+.+.+.....  ....+ .          ..-++++||+|+.+....
T Consensus        92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~~--~~~qi-~----------~ad~~~~~k~d~~~~~~~  155 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPRK--GGPGI-T----------RSDLLVINKIDLAPMVGA  155 (199)
T ss_pred             CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhhh--hHhHh-h----------hccEEEEEhhhccccccc
Confidence            4667888888321111111 1  15779999999876653221  01111 1          123899999999753222


Q ss_pred             CHHHHHHHHH--HhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         135 SAAEGEAEAK--MWGCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       135 ~~~~~~~~~~--~~~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      .........+  ..+.+++++|+++|.|+.++++++.+.+
T Consensus       156 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       156 DLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            2222233333  3456999999999999999999999765

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.46  E-value=5.6e-13  Score=111.64  Aligned_cols=118  Identities=17%  Similarity=0.135  Sum_probs=80.4

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCC---------------CCCC---cCCCcccce-eEEEEeCCcEEEEEEEeCCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT---------------FRES---YIPTIEDTY-RQVISCNKNICTLQITDTTG   64 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~---------------~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G   64 (200)
                      .....+|+++|..++|||||+++|+...               +.+.   ...+..... ......+...+.+.+|||||
T Consensus        16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG   95 (720)
T TIGR00490        16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG   95 (720)
T ss_pred             cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence            4456799999999999999999997521               1000   111111111 11223456678999999999


Q ss_pred             CCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      +..+.......+..+|++++|+|+.+....+. ...|..+..        ...|+++++||+|...
T Consensus        96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~--------~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK--------ENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH--------cCCCEEEEEEChhccc
Confidence            99988888889999999999999987543332 222322222        3368899999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.45  E-value=4.9e-12  Score=97.87  Aligned_cols=86  Identities=17%  Similarity=0.162  Sum_probs=55.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCc---------------EEEEEEEeCCCCCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKN---------------ICTLQITDTTGSHQ   67 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~   67 (200)
                      ...-.+|+++|.||+|||||+|+|.+..... +|..++-......+.+.+.               ..+++++||||...
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            4566899999999999999999997755422 2222221222223322221               23689999999542


Q ss_pred             C----hhhH---hhccccCCEEEEEeeCC
Q psy8700          68 F----PAMQ---RLSISKGHAFILVYSCT   89 (200)
Q Consensus        68 ~----~~~~---~~~~~~~~~~i~v~d~~   89 (200)
                      -    ..+.   ...++++|++++|+|..
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1    1222   23456799999999973

>cd01882 BMS1 Bms1

Probab=99.45  E-value=3.4e-12  Score=92.82  Aligned_cols=140  Identities=15%  Similarity=0.155  Sum_probs=83.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ......|+++|.+|+|||||++.+.+...... .....++..  + .......+.++||||..   .........+|+++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~-~~~~~g~i~--i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl  108 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQN-ISDIKGPIT--V-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL  108 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCc-cccccccEE--E-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence            35568899999999999999999987422111 111122211  1 11234578999999843   22233467899999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcE-EEEeeCCCCCcccc-cCH--HHH-HHHHH--HhCCcEEEeccc
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI-MLVGNKCDETENRE-VSA--AEG-EAEAK--MWGCHFMETSAK  156 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~~~--~~~-~~~~~--~~~~~~~~vSa~  156 (200)
                      +++|......... ..++..+...        ..|. ++|+||+|+.+... ...  ... ..+..  ..+.+++.+||+
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~~--------g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~  179 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQVH--------GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGI  179 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHHc--------CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeec
Confidence            9999986544333 2344444332        2564 45999999874322 111  111 11221  234589999998


Q ss_pred             CCC
Q psy8700         157 TNH  159 (200)
Q Consensus       157 ~~~  159 (200)
                      ++-
T Consensus       180 ~~~  182 (225)
T cd01882         180 VHG  182 (225)
T ss_pred             cCC
Confidence            874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1532|consensus

Probab=99.44  E-value=1.6e-13  Score=99.09  Aligned_cols=124  Identities=10%  Similarity=0.098  Sum_probs=69.5

Q ss_pred             EEEEEEeCCCCCC------ChhhHhhccccC--CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700          55 CTLQITDTTGSHQ------FPAMQRLSISKG--HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC  126 (200)
Q Consensus        55 ~~~~~~D~~G~~~------~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  126 (200)
                      ....++||||+.+      ...+....+...  -++++|+|.....  ......-+++.....  ....+.|++++.||+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~--~p~tFMSNMlYAcSi--lyktklp~ivvfNK~  191 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRST--SPTTFMSNMLYACSI--LYKTKLPFIVVFNKT  191 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCC--CchhHHHHHHHHHHH--HHhccCCeEEEEecc
Confidence            4688999999653      123333333333  4555666654221  111111111111100  012568999999999


Q ss_pred             CCCcccc-------------------------cCHHHHHHHHH-HhCCcEEEecccCCCcHHHHHHHHHHHHhccchhHH
Q psy8700         127 DETENRE-------------------------VSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ  180 (200)
Q Consensus       127 Dl~~~~~-------------------------~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~~  180 (200)
                      |+.+..-                         ........+.. ..++..+.||+.+|.|.+++|..+.+.+.+......
T Consensus       192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~yk  271 (366)
T KOG1532|consen  192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYK  271 (366)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhh
Confidence            9965410                         00001111111 234678899999999999999999888876665554


Q ss_pred             Hh
Q psy8700         181 LE  182 (200)
Q Consensus       181 ~~  182 (200)
                      .+
T Consensus       272 p~  273 (366)
T KOG1532|consen  272 PE  273 (366)
T ss_pred             hH
Confidence            43

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.44  E-value=1.9e-12  Score=99.99  Aligned_cols=159  Identities=17%  Similarity=0.197  Sum_probs=113.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC--CC-----CCcCCC----------cc-cceeEEEE-eCCcEEEEEEEeCCCCCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGT--FR-----ESYIPT----------IE-DTYRQVIS-CNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~--~~-----~~~~~~----------~~-~~~~~~~~-~~~~~~~~~~~D~~G~~~   67 (200)
                      .-+..++..-.-|||||..|++...  ..     ++...+          +- ...+-.+. -+++.+.+.++||||+-.
T Consensus         9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD   88 (603)
T COG0481           9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   88 (603)
T ss_pred             ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence            3455677778899999999997522  11     111111          11 11122222 256889999999999998


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG  147 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  147 (200)
                      +..-....+..|.+.++|+|++.+-.-+.+...+..+.         .+.-++-|+||+||+....  +.-..+.....|
T Consensus        89 FsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle---------~~LeIiPViNKIDLP~Adp--ervk~eIe~~iG  157 (603)
T COG0481          89 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---------NNLEIIPVLNKIDLPAADP--ERVKQEIEDIIG  157 (603)
T ss_pred             eEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH---------cCcEEEEeeecccCCCCCH--HHHHHHHHHHhC
Confidence            88777778889999999999998876666666665555         3357888999999987553  233344555566


Q ss_pred             C---cEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         148 C---HFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       148 ~---~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      +   ..+.+||++|.||.++++.|++.+....
T Consensus       158 id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         158 IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             CCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence            5   5788999999999999999999886544

>KOG0082|consensus

Probab=99.44  E-value=4.7e-13  Score=101.18  Aligned_cols=140  Identities=20%  Similarity=0.196  Sum_probs=92.9

Q ss_pred             CCcCCCcccceeE--------EEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC----------hhHHH
Q psy8700          34 ESYIPTIEDTYRQ--------VISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS----------RQSLE   95 (200)
Q Consensus        34 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~   95 (200)
                      +.|.|+..+....        .+.+.-....+.+.|+|||-..+..|.+++.++++++||+++++          .+.+.
T Consensus       166 ~~Y~PT~~DIL~~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~  245 (354)
T KOG0082|consen  166 PDYVPTEQDILRSRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMH  245 (354)
T ss_pred             CCCCCCHHHHHhhccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHH
Confidence            4677776544322        22223334588999999999999999999999999999999875          22344


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc--------------c-cCHHHHHHHHH-----H-----hCCcE
Q psy8700          96 ELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR--------------E-VSAAEGEAEAK-----M-----WGCHF  150 (200)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~-~~~~~~~~~~~-----~-----~~~~~  150 (200)
                      ....+++.+.....    ..+.++++++||.|+-..+              . ....++..+..     .     ..+.+
T Consensus       246 eS~~LF~sI~n~~~----F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~  321 (354)
T KOG0082|consen  246 ESLKLFESICNNKW----FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYV  321 (354)
T ss_pred             HHHHHHHHHhcCcc----cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceE
Confidence            44445555555443    4678999999999984321              0 11222222221     1     12335


Q ss_pred             EEecccCCCcHHHHHHHHHHHHhccch
Q psy8700         151 METSAKTNHNVKELFAELLNLEKNRNI  177 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~~~~~~~~  177 (200)
                      ..+.|.+-.+|+.+|..+.+.+..++.
T Consensus       322 h~T~AtDT~nv~~vf~av~d~Ii~~nl  348 (354)
T KOG0082|consen  322 HFTCATDTQNVQFVFDAVTDTIIQNNL  348 (354)
T ss_pred             EEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence            567888999999999999998866543

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.43  E-value=6e-13  Score=97.81  Aligned_cols=97  Identities=22%  Similarity=0.282  Sum_probs=77.1

Q ss_pred             CCCChhhHhhccccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH
Q psy8700          65 SHQFPAMQRLSISKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA  143 (200)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  143 (200)
                      .++++.+.+.+++++|.+++|+|+.++. ++..+..|+..+..        .+.|+++|+||+||.+..+........+ 
T Consensus        23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--------~~i~~vIV~NK~DL~~~~~~~~~~~~~~-   93 (245)
T TIGR00157        23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--------QNIEPIIVLNKIDLLDDEDMEKEQLDIY-   93 (245)
T ss_pred             ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--------CCCCEEEEEECcccCCCHHHHHHHHHHH-
Confidence            3677888888999999999999999888 89999888865543        3489999999999976444332333333 


Q ss_pred             HHhCCcEEEecccCCCcHHHHHHHHHH
Q psy8700         144 KMWGCHFMETSAKTNHNVKELFAELLN  170 (200)
Q Consensus       144 ~~~~~~~~~vSa~~~~~i~~~~~~i~~  170 (200)
                      ...+++++++||++|.|++++|+.+..
T Consensus        94 ~~~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        94 RNIGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HHCCCeEEEEecCCchhHHHHHhhhcC
Confidence            347889999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK00007 elongation factor G; Reviewed

Probab=99.43  E-value=2.1e-12  Score=107.94  Aligned_cols=119  Identities=15%  Similarity=0.165  Sum_probs=77.5

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCC--CCCC-cCCC------------ccccee--EEEEeCCcEEEEEEEeCCCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRES-YIPT------------IEDTYR--QVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~-~~~~------------~~~~~~--~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      .+..+|+++|.+++|||||+++|+...  .... ....            ....+.  ....+.-....+.++||||+..
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            345799999999999999999997421  1000 0000            001111  1111222345899999999887


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR  132 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  132 (200)
                      +.......+..+|++++|+|+...-..+. ...+..+..        ...|+++++||+|+.+..
T Consensus        88 f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~--------~~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         88 FTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK--------YKVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH--------cCCCEEEEEECCCCCCCC
Confidence            76667777888999999999887644443 334444443        337899999999987543

>KOG1707|consensus

Probab=99.41  E-value=1e-11  Score=98.10  Aligned_cols=163  Identities=18%  Similarity=0.265  Sum_probs=121.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      ..+-++..++|+.++|||.++++++++.+...+..+....+ ...+...++..-+.+.|.+-. ....+.... ..+|++
T Consensus       422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~  499 (625)
T KOG1707|consen  422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA  499 (625)
T ss_pred             cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence            44568899999999999999999999998776656555444 345555666667777777754 333333333 689999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNV  161 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i  161 (200)
                      +++||.+++.++.......+.....       ...|+++|++|+|+.+..+.......++++..++ +.+.+|.+.... 
T Consensus       500 ~~~YDsS~p~sf~~~a~v~~~~~~~-------~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-  571 (625)
T KOG1707|consen  500 CLVYDSSNPRSFEYLAEVYNKYFDL-------YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-  571 (625)
T ss_pred             EEecccCCchHHHHHHHHHHHhhhc-------cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-
Confidence            9999999999998877766554443       4589999999999977655444445888889998 677788774333 


Q ss_pred             HHHHHHHHHHHhccc
Q psy8700         162 KELFAELLNLEKNRN  176 (200)
Q Consensus       162 ~~~~~~i~~~~~~~~  176 (200)
                      .++|..|..+..-.+
T Consensus       572 ~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  572 NELFIKLATMAQYPH  586 (625)
T ss_pred             chHHHHHHHhhhCCC
Confidence            899999988775544

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.40  E-value=6.4e-12  Score=90.36  Aligned_cols=151  Identities=17%  Similarity=0.127  Sum_probs=82.5

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCC-C------Cc-CCCcc-ccee----EEEEe-CC------------------
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR-E------SY-IPTIE-DTYR----QVISC-NK------------------   52 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~------~~-~~~~~-~~~~----~~~~~-~~------------------   52 (200)
                      .....|+++|++|||||||+++++..... .      .. ....+ ...+    ..+.. ++                  
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence            45678999999999999999998753100 0      00 00000 0000    00111 00                  


Q ss_pred             -cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700          53 -NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN  131 (200)
Q Consensus        53 -~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  131 (200)
                       ....+.++||.|.-... .  .+....+..+.|+|..+.+....  ..   ...        ...|.++++||+|+.+.
T Consensus       100 ~~~~d~IiIEt~G~l~~~-~--~~~~~~~~~i~Vvd~~~~d~~~~--~~---~~~--------~~~a~iiv~NK~Dl~~~  163 (207)
T TIGR00073       100 LDDIDLLFIENVGNLVCP-A--DFDLGEHMRVVLLSVTEGDDKPL--KY---PGM--------FKEADLIVINKADLAEA  163 (207)
T ss_pred             cCCCCEEEEecCCCcCCC-c--ccccccCeEEEEEecCcccchhh--hh---HhH--------HhhCCEEEEEHHHcccc
Confidence             12366777777721100 0  11112344556777765432111  00   111        12577999999999754


Q ss_pred             cccCHHHHHHHHHH--hCCcEEEecccCCCcHHHHHHHHHHH
Q psy8700         132 REVSAAEGEAEAKM--WGCHFMETSAKTNHNVKELFAELLNL  171 (200)
Q Consensus       132 ~~~~~~~~~~~~~~--~~~~~~~vSa~~~~~i~~~~~~i~~~  171 (200)
                      ............+.  ...+++++||+++.|+.++++++.+.
T Consensus       164 ~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       164 VGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             chhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            32222222222223  23699999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.40  E-value=4.1e-12  Score=96.25  Aligned_cols=104  Identities=21%  Similarity=0.214  Sum_probs=64.0

Q ss_pred             EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE  133 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  133 (200)
                      .+.+.|+||+|.-...   ...+..+|.++++......   ..+......+          .+.|.++++||+|+.....
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l----------~~~~~ivv~NK~Dl~~~~~  189 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL----------MEIADIYVVNKADGEGATN  189 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH----------hhhccEEEEEcccccchhH
Confidence            4688999999944211   2345567888877544333   3333322222          2267799999999875432


Q ss_pred             cCHHHH------HHH-HH--HhCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         134 VSAAEG------EAE-AK--MWGCHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       134 ~~~~~~------~~~-~~--~~~~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      ......      ... ..  .+..+++.+||+++.|++++++++.+...
T Consensus       190 ~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       190 VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            111000      000 11  12346999999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.38  E-value=1.9e-11  Score=104.61  Aligned_cols=143  Identities=20%  Similarity=0.256  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCC----------------cEEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700          18 VGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNK----------------NICTLQITDTTGSHQFPAMQRLSISKGH   80 (200)
Q Consensus        18 ~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----------------~~~~~~~~D~~G~~~~~~~~~~~~~~~~   80 (200)
                      ++||||+.++.+..........+.... ...+..+.                ....+.||||||++.+..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            359999999988665433222222221 11222211                1113899999999999888888888899


Q ss_pred             EEEEEeeCCCh---hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC------------HHH-HHH---
Q psy8700          81 AFILVYSCTSR---QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS------------AAE-GEA---  141 (200)
Q Consensus        81 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------------~~~-~~~---  141 (200)
                      ++++|+|+++.   .++..+.    .+..        .+.|+++++||+|+.......            ... ..+   
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk~--------~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~  619 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILRQ--------YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI  619 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHHH--------cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence            99999999873   3333322    2222        237999999999985321100            000 000   


Q ss_pred             --------HH------------HHh--CCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         142 --------EA------------KMW--GCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       142 --------~~------------~~~--~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                              +.            ..+  ..++++|||++|.|++++++.+....
T Consensus       620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence                    00            011  24899999999999999998876543

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=3e-12  Score=94.51  Aligned_cols=167  Identities=15%  Similarity=0.126  Sum_probs=107.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCC-------------------------CCCCcCCCcccceeEEEEe---CCcEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGT-------------------------FRESYIPTIEDTYRQVISC---NKNICT   56 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~-------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~   56 (200)
                      +.+++|.++|...-|||||+.+|++--                         +.+.+.|....+....-..   ..-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            578999999999999999999997511                         1111211110000000000   122357


Q ss_pred             EEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH
Q psy8700          57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA  136 (200)
Q Consensus        57 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  136 (200)
                      +.|+|.||++-.......-..=.|+.++|+.++++..--+...-+..+.-..       -..++|+-||+|+....+..+
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig-------ik~iiIvQNKIDlV~~E~AlE  160 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG-------IKNIIIVQNKIDLVSRERALE  160 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc-------cceEEEEecccceecHHHHHH
Confidence            8999999977655544444444699999999997654444444444444332       267899999999986543221


Q ss_pred             --HHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhccchh
Q psy8700         137 --AEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKNRNIS  178 (200)
Q Consensus       137 --~~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~  178 (200)
                        .+.+.|.+.   -+.|++++||..+.||+-+++.|.+.+.....+
T Consensus       161 ~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd  207 (415)
T COG5257         161 NYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD  207 (415)
T ss_pred             HHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence              223333332   356999999999999999999999998755443

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.37  E-value=1.4e-11  Score=94.48  Aligned_cols=165  Identities=18%  Similarity=0.140  Sum_probs=81.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCC--cccceeEEEEeCCcEEEEEEEeCCCCCCChh-----hHhhcc
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPT--IEDTYRQVISCNKNICTLQITDTTGSHQFPA-----MQRLSI   76 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----~~~~~~   76 (200)
                      +..++|+|+|.+|+|||||||+|.+-.-. +..-++  ...+...........-.+.+||.||......     +...-+
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            35789999999999999999999763221 111111  1111122111112223699999999543332     223345


Q ss_pred             ccCCEEEEEeeCCChhHHHHHHHHH-HHHHHHhCCCCCCCCCcEEEEeeCCCC--Cc-----ccccCHH----HHHHHH-
Q psy8700          77 SKGHAFILVYSCTSRQSLEELRPIW-EVIRETKGGANELASIPIMLVGNKCDE--TE-----NREVSAA----EGEAEA-  143 (200)
Q Consensus        77 ~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl--~~-----~~~~~~~----~~~~~~-  143 (200)
                      ...|.+|++.+-.    +....-++ ..+..        .+.|+.+|-||+|.  .+     +......    .....+ 
T Consensus       113 ~~yD~fiii~s~r----f~~ndv~La~~i~~--------~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~  180 (376)
T PF05049_consen  113 YRYDFFIIISSER----FTENDVQLAKEIQR--------MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCL  180 (376)
T ss_dssp             GG-SEEEEEESSS------HHHHHHHHHHHH--------TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHH
T ss_pred             cccCEEEEEeCCC----CchhhHHHHHHHHH--------cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHH
Confidence            5679877766522    33333333 33333        23799999999995  11     1111111    111111 


Q ss_pred             ---HHhC---CcEEEecccCCC--cHHHHHHHHHHHHhccchhHHH
Q psy8700         144 ---KMWG---CHFMETSAKTNH--NVKELFAELLNLEKNRNISLQL  181 (200)
Q Consensus       144 ---~~~~---~~~~~vSa~~~~--~i~~~~~~i~~~~~~~~~~~~~  181 (200)
                         +..|   .++|.+|+.+-.  ++..+.+.+.+-+..+..+..+
T Consensus       181 ~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fl  226 (376)
T PF05049_consen  181 ENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFL  226 (376)
T ss_dssp             HHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHH
T ss_pred             HHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHH
Confidence               1123   379999987654  5888999999888766655543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG0461|consensus

Probab=99.36  E-value=2.4e-11  Score=90.70  Aligned_cols=167  Identities=16%  Similarity=0.107  Sum_probs=102.9

Q ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCC----CCCCcCCCccccee------EEE-----EeCCcEEEEEEEeCCCC
Q psy8700           1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGT----FRESYIPTIEDTYR------QVI-----SCNKNICTLQITDTTGS   65 (200)
Q Consensus         1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~~----~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~D~~G~   65 (200)
                      |..++..+++.++|...||||||.++|..-.    ++.+..++.-+.+-      ..+     ...++..++.++|+||+
T Consensus         1 m~~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH   80 (522)
T KOG0461|consen    1 MTSPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH   80 (522)
T ss_pred             CCCCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc
Confidence            5566777999999999999999999997533    22222222211111      111     12456678999999996


Q ss_pred             CCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC-HH--HHHHH
Q psy8700          66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS-AA--EGEAE  142 (200)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~--~~~~~  142 (200)
                      ...-+....-.+-.|..++|+|+..+..-+..+-+.  +-+..       -...+||+||+|.....+.. ..  .....
T Consensus        81 asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~-------c~klvvvinkid~lpE~qr~ski~k~~kk~  151 (522)
T KOG0461|consen   81 ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL-------CKKLVVVINKIDVLPENQRASKIEKSAKKV  151 (522)
T ss_pred             HHHHHHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh-------ccceEEEEeccccccchhhhhHHHHHHHHH
Confidence            654444444444468999999998664433332222  22222       14578889999976543221 11  11222


Q ss_pred             HHH------hC-CcEEEecccCC----CcHHHHHHHHHHHHhccc
Q psy8700         143 AKM------WG-CHFMETSAKTN----HNVKELFAELLNLEKNRN  176 (200)
Q Consensus       143 ~~~------~~-~~~~~vSa~~~----~~i~~~~~~i~~~~~~~~  176 (200)
                      .+.      .| .|++++||+.|    .+|.++.+.+.+.+.+..
T Consensus       152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~  196 (522)
T KOG0461|consen  152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK  196 (522)
T ss_pred             HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence            111      22 69999999999    678888888887775433

>KOG3886|consensus

Probab=99.34  E-value=4.3e-12  Score=89.55  Aligned_cols=160  Identities=14%  Similarity=0.175  Sum_probs=99.7

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC----CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC-----hhhHhhcc
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFR----ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF-----PAMQRLSI   76 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~~~   76 (200)
                      ..-||+++|..||||||+=-.+. .++.    ....++++.... .+.+- .+.-+.+||.+|++.+     .......+
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF-~ny~a~D~~rlg~tidveHs-h~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF   79 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIF-ANYIARDTRRLGATIDVEHS-HVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIF   79 (295)
T ss_pred             ccceEEEeccCCCCccccchhhh-hhhhhhhhhccCCcceeeeh-hhhhh-hhheeehhccCCcHHHHHHHHhhcchhhh
Confidence            35689999999999999533322 2221    112222221111 11111 2346889999998742     23556688


Q ss_pred             ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--HHHHHH----HHHHhCCcE
Q psy8700          77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS--AAEGEA----EAKMWGCHF  150 (200)
Q Consensus        77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~----~~~~~~~~~  150 (200)
                      .+.+++++|||+...+-..++..+...+.....   ..|...+++.++|+|+.......  ..+...    +....++.+
T Consensus        80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~---~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~  156 (295)
T KOG3886|consen   80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQ---NSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKC  156 (295)
T ss_pred             eeheeeeeeeeccchhhhhhHHHHHHHHHHHHh---cCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccc
Confidence            899999999999998888887777777766665   35778899999999997543222  222222    222344577


Q ss_pred             EEecccCCCcHHHHHHHHHHHH
Q psy8700         151 METSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      +++|..+ ..+-++|..|....
T Consensus       157 f~TsiwD-etl~KAWS~iv~~l  177 (295)
T KOG3886|consen  157 FPTSIWD-ETLYKAWSSIVYNL  177 (295)
T ss_pred             cccchhh-HHHHHHHHHHHHhh
Confidence            8777643 34555555555444

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.34  E-value=4.6e-11  Score=94.72  Aligned_cols=169  Identities=19%  Similarity=0.272  Sum_probs=112.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE-EEEe--CCcEEEEEEEeCCCCCCChhhHhhcccc---
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISC--NKNICTLQITDTTGSHQFPAMQRLSISK---   78 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~---   78 (200)
                      ...-.|+|+|..++|||||+.+|.+..   .+.++.+-.|.+ .+.-  .+...++.+|...|...+..+....+..   
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            345789999999999999999997643   233343322221 1211  1234688999999877777777665653   


Q ss_pred             -CCEEEEEeeCCChhH-HHHHHHHHHHHHHHhCCCC--------------------------------------------
Q psy8700          79 -GHAFILVYSCTSRQS-LEELRPIWEVIRETKGGAN--------------------------------------------  112 (200)
Q Consensus        79 -~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~--------------------------------------------  112 (200)
                       --.+++|+|.+.|.. ++.+..|...+......+.                                            
T Consensus       100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~  179 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD  179 (472)
T ss_pred             cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence             257889999999885 4456666544333322100                                            


Q ss_pred             C-------------CCCCcEEEEeeCCCCCccc-----------ccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHH
Q psy8700         113 E-------------LASIPIMLVGNKCDETENR-----------EVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL  168 (200)
Q Consensus       113 ~-------------~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i  168 (200)
                      +             .-.+|++||.+|+|.....           +...+-...++..+|+.++++|++...+++.+...|
T Consensus       180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence            0             0135999999999975311           111122455667789999999999999999999998


Q ss_pred             HHHHhccc
Q psy8700         169 LNLEKNRN  176 (200)
Q Consensus       169 ~~~~~~~~  176 (200)
                      .+.+....
T Consensus       260 ~h~l~~~~  267 (472)
T PF05783_consen  260 LHRLYGFP  267 (472)
T ss_pred             HHHhccCC
Confidence            88775443

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.33  E-value=7.4e-13  Score=96.72  Aligned_cols=112  Identities=14%  Similarity=0.138  Sum_probs=54.2

Q ss_pred             EEEEEeCCCCCCChhh------Hhhccc--cCCEEEEEeeCCChhH-HHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700          56 TLQITDTTGSHQFPAM------QRLSIS--KGHAFILVYSCTSRQS-LEELRPIWEVIRETKGGANELASIPIMLVGNKC  126 (200)
Q Consensus        56 ~~~~~D~~G~~~~~~~------~~~~~~--~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  126 (200)
                      ...++|||||.+....      ....+.  ..-++++++|..-..+ ...+..++..+.-..     ..+.|.+.|+||+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~-----~~~lP~vnvlsK~  166 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML-----RLELPHVNVLSKI  166 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH-----HHTSEEEEEE--G
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh-----hCCCCEEEeeecc
Confidence            6899999998764321      122222  3457778888653222 112222222211111     1348999999999


Q ss_pred             CCCcccc------------c-------CHHHHHHHHHH---hC-C-cEEEecccCCCcHHHHHHHHHHHH
Q psy8700         127 DETENRE------------V-------SAAEGEAEAKM---WG-C-HFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       127 Dl~~~~~------------~-------~~~~~~~~~~~---~~-~-~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      |+.+...            .       ...........   .+ . .++.+|+.+++++.+++..|-+.+
T Consensus       167 Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  167 DLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             CcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            9987220            0       00001111111   22 3 699999999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG3905|consensus

Probab=99.33  E-value=7e-11  Score=87.56  Aligned_cols=164  Identities=19%  Similarity=0.249  Sum_probs=115.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE-EEEe--CCcEEEEEEEeCCCCCCChhhHhhccccC----
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISC--NKNICTLQITDTTGSHQFPAMQRLSISKG----   79 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~----   79 (200)
                      .-.|+++|+.|+|||||+.+|.+..   .+.+..+-.|.+ .++-  .+...++.+|-..|.-....+....+...    
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            4579999999999999999998854   444444433333 2222  22336888999989766666666555443    


Q ss_pred             CEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCC--------------------------------------------
Q psy8700          80 HAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANEL--------------------------------------------  114 (200)
Q Consensus        80 ~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------  114 (200)
                      -.+|++.|+++|. -+..++.|.+.+.+..+...-.                                            
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence            4678899999995 5777888877666554431110                                            


Q ss_pred             ------------CCCcEEEEeeCCCCCc----c-------cccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy8700         115 ------------ASIPIMLVGNKCDETE----N-------REVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL  171 (200)
Q Consensus       115 ------------~~~p~ivv~nK~Dl~~----~-------~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~  171 (200)
                                  ..+|++||.+|+|...    .       -.........|+..+|...+.+|++...||+-+...|.+.
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence                        2349999999999842    1       1122334566777889999999999999999999999886


Q ss_pred             Hh
Q psy8700         172 EK  173 (200)
Q Consensus       172 ~~  173 (200)
                      .+
T Consensus       289 ~y  290 (473)
T KOG3905|consen  289 SY  290 (473)
T ss_pred             hc
Confidence            64

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.32  E-value=1.8e-10  Score=88.65  Aligned_cols=160  Identities=16%  Similarity=0.184  Sum_probs=95.5

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhC----CCC-------------CC-cC---CCcccce----eEEE-EeCCcEEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKG----TFR-------------ES-YI---PTIEDTY----RQVI-SCNKNICTL   57 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~----~~~-------------~~-~~---~~~~~~~----~~~~-~~~~~~~~~   57 (200)
                      ....+-|+++|+.++|||||+|+|.+.    ...             .. ..   .|++..+    ...+ ..++....+
T Consensus        14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V   93 (492)
T TIGR02836        14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV   93 (492)
T ss_pred             hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence            467789999999999999999999875    222             00 01   1111111    1122 224555789


Q ss_pred             EEEeCCCCCCChh-------h----------------------Hhhccc-cCCEEEEEe-eCC--C---hhHHHHHHHHH
Q psy8700          58 QITDTTGSHQFPA-------M----------------------QRLSIS-KGHAFILVY-SCT--S---RQSLEELRPIW  101 (200)
Q Consensus        58 ~~~D~~G~~~~~~-------~----------------------~~~~~~-~~~~~i~v~-d~~--~---~~~~~~~~~~~  101 (200)
                      .++||+|.+....       .                      ....+. .++..++|. |.+  +   ......-..+.
T Consensus        94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i  173 (492)
T TIGR02836        94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI  173 (492)
T ss_pred             EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence            9999999432111       1                      333444 678777777 553  1   11223334444


Q ss_pred             HHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCC--CcHHHHHHHHHHHHh
Q psy8700         102 EVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTN--HNVKELFAELLNLEK  173 (200)
Q Consensus       102 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~--~~i~~~~~~i~~~~~  173 (200)
                      ..+....        +|+++++|+.|-....  .......+...++.+++.+|+.+-  ..|..+|+.++-.+.
T Consensus       174 ~eLk~~~--------kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EFP  237 (492)
T TIGR02836       174 EELKELN--------KPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEFP  237 (492)
T ss_pred             HHHHhcC--------CCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence            5555443        8999999999943322  334445556677888888876543  456666666655443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.32  E-value=3.6e-11  Score=101.19  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=78.6

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCC--CCCCc------CCCcc-----cc-e-----eEEEEeCCcEEEEEEEeCC
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRESY------IPTIE-----DT-Y-----RQVISCNKNICTLQITDTT   63 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~------~~~~~-----~~-~-----~~~~~~~~~~~~~~~~D~~   63 (200)
                      +.++.-+|+++|..++|||||+.+|+...  .....      .....     +. .     ......++....+.|+|||
T Consensus        16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP   95 (731)
T PRK07560         16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP   95 (731)
T ss_pred             chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence            34455679999999999999999997532  11100      00000     00 0     0011224456789999999


Q ss_pred             CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      |+..+.......+..+|++++|+|+......+. ...|......        ..|.++++||+|..
T Consensus        96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~~--------~~~~iv~iNK~D~~  152 (731)
T PRK07560         96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALRE--------RVKPVLFINKVDRL  152 (731)
T ss_pred             CccChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHHc--------CCCeEEEEECchhh
Confidence            999988888888999999999999887643333 3344333322        25789999999975

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.30  E-value=1.3e-11  Score=105.06  Aligned_cols=118  Identities=17%  Similarity=0.175  Sum_probs=80.8

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCC--CCCc------CCCcc------ccee---EEEE--------------eC
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESY------IPTIE------DTYR---QVIS--------------CN   51 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~------~~~~~------~~~~---~~~~--------------~~   51 (200)
                      ...+.-+|+++|..++|||||+.+|+...-  ....      .....      -+..   ....              .+
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            455677999999999999999999985331  0000      00000      0000   0111              12


Q ss_pred             CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      +..+.+.++||||+.++.......++.+|++++|+|+.++-.... ...|..+..        .+.|+++++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~--------~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG--------ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH--------CCCCEEEEEECCccc
Confidence            235788999999999998888888899999999999987755444 344444443        347999999999986

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.30  E-value=1.8e-10  Score=88.33  Aligned_cols=82  Identities=20%  Similarity=0.239  Sum_probs=53.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCc---------------EEEEEEEeCCCCCCC---
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKN---------------ICTLQITDTTGSHQF---   68 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~---   68 (200)
                      ++|+++|.||||||||+|+|++.... .+|..++-......+.+.+.               ...++++|+||....   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999999986632 22222222222223333221               136899999995431   


Q ss_pred             -hhhHhh---ccccCCEEEEEeeCC
Q psy8700          69 -PAMQRL---SISKGHAFILVYSCT   89 (200)
Q Consensus        69 -~~~~~~---~~~~~~~~i~v~d~~   89 (200)
                       ..+...   .++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence             122222   456799999999984

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.30  E-value=1.5e-11  Score=85.47  Aligned_cols=63  Identities=16%  Similarity=0.260  Sum_probs=44.0

Q ss_pred             EEEEEeCCCCC----CChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700          56 TLQITDTTGSH----QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC  126 (200)
Q Consensus        56 ~~~~~D~~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  126 (200)
                      .+.|+||||..    ....+...++..+|++++|.+.+...+-.....+......        ....+++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~--------~~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP--------DKSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT--------TCSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC--------CCCeEEEEEcCC
Confidence            56799999953    2346778888999999999999986655554444433333        224589999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PTZ00416 elongation factor 2; Provisional

Probab=99.30  E-value=1.3e-11  Score=104.85  Aligned_cols=118  Identities=15%  Similarity=0.186  Sum_probs=79.6

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCC--CCCCcC-CCc-----c-----c-cee---EEEEeC--------CcEEEE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRESYI-PTI-----E-----D-TYR---QVISCN--------KNICTL   57 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~-~~~-----~-----~-~~~---~~~~~~--------~~~~~~   57 (200)
                      ..++.-+|+++|..++|||||+++|+...  ...... .+.     .     . +..   ......        +....+
T Consensus        15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i   94 (836)
T PTZ00416         15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLI   94 (836)
T ss_pred             CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEE
Confidence            34556799999999999999999998632  110000 000     0     0 000   011111        225679


Q ss_pred             EEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          58 QITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        58 ~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      .++||||+.++.......+..+|++++|+|+.++-..+. ...|..+..        .+.|+++++||+|+.
T Consensus        95 ~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~--------~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         95 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ--------ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH--------cCCCEEEEEEChhhh
Confidence            999999999888888888899999999999988654443 344544443        337999999999986

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.29  E-value=6.5e-11  Score=88.58  Aligned_cols=149  Identities=24%  Similarity=0.208  Sum_probs=102.4

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCC-------------C----------------------CcCCCcccceeEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR-------------E----------------------SYIPTIEDTYRQVI   48 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~-------------~----------------------~~~~~~~~~~~~~~   48 (200)
                      +...++.+-.|...=||||||-||+.+.-.             .                      ...-|++..|+   
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYR---   79 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYR---   79 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEee---
Confidence            456789999999999999999999754310             0                      00001111111   


Q ss_pred             EeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          49 SCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        49 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                      .+...+.++.+-||||++.|.+....-...||+.|+++|+...  +.........+....+      -.++++.+||+||
T Consensus        80 yFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLG------IrhvvvAVNKmDL  151 (431)
T COG2895          80 YFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLG------IRHVVVAVNKMDL  151 (431)
T ss_pred             ecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhC------CcEEEEEEeeecc
Confidence            2344567899999999999988888888899999999998543  3343444455555553      3678999999999


Q ss_pred             CcccccCH----HHHHHHHHHhCC---cEEEecccCCCcHHH
Q psy8700         129 TENREVSA----AEGEAEAKMWGC---HFMETSAKTNHNVKE  163 (200)
Q Consensus       129 ~~~~~~~~----~~~~~~~~~~~~---~~~~vSa~~~~~i~~  163 (200)
                      .+..+...    .+-..++...+.   .++++||+.|+|+-.
T Consensus       152 vdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         152 VDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             cccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            87654322    223344555554   699999999998643

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.27  E-value=1.1e-10  Score=76.90  Aligned_cols=114  Identities=27%  Similarity=0.308  Sum_probs=78.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcC-CCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYI-PTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +|++++|..|+|||+|+.++....+...+. ++.+                          +......+.+.++.++.++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~   54 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW   54 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence            589999999999999999997766643322 2222                          3334455677889999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      +.++..++...  |...+....     ..+.|.++++||.|+.+..+....        .+..++++|++++.|+.
T Consensus        55 ~~~~~~s~~~~--~~~~i~~~~-----k~dl~~~~~~nk~dl~~~~~~~~~--------~~~~~~~~s~~~~~~~~  115 (124)
T smart00010       55 RVDDRDSADNK--NVPEVLVGN-----KSDLPILVGGNRDVLEEERQVATE--------EGLEFAETSAKTPEEGE  115 (124)
T ss_pred             EccCHHHHHHH--hHHHHHhcC-----CCCCcEEEEeechhhHhhCcCCHH--------HHHHHHHHhCCCcchhh
Confidence            99999888665  444443322     245789999999998443332221        22346678899999884

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.27  E-value=1.1e-10  Score=90.32  Aligned_cols=162  Identities=18%  Similarity=0.182  Sum_probs=109.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC--CCCC------cCCCc------c-cceeEEEEeCCcEEEEEEEeCCCCCCChhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGT--FRES------YIPTI------E-DTYRQVISCNKNICTLQITDTTGSHQFPAM   71 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~------~~~~~------~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   71 (200)
                      .-+|+++....-|||||+..|+...  +.++      ...+.      + ....+...++-+.+.+.++||||+..+..-
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            4579999999999999999998532  2221      11111      1 111222223334468999999999999999


Q ss_pred             HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH-HHHHHH-------
Q psy8700          72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA-EGEAEA-------  143 (200)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~~-------  143 (200)
                      ....+.-.|++++++|+.+...- +.+..+.....        ...+.|||+||+|.++.+..... +...+.       
T Consensus        85 VERvl~MVDgvlLlVDA~EGpMP-QTrFVlkKAl~--------~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d  155 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPMP-QTRFVLKKALA--------LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD  155 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCCC-chhhhHHHHHH--------cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh
Confidence            99999999999999999986433 33443333333        33677999999998876532221 122222       


Q ss_pred             HHhCCcEEEecccCCC----------cHHHHHHHHHHHHhccch
Q psy8700         144 KMWGCHFMETSAKTNH----------NVKELFAELLNLEKNRNI  177 (200)
Q Consensus       144 ~~~~~~~~~vSa~~~~----------~i~~~~~~i~~~~~~~~~  177 (200)
                      ..+.+|+++.|+..|.          ++..+|+.|++.+.....
T Consensus       156 eQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~  199 (603)
T COG1217         156 EQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG  199 (603)
T ss_pred             hhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence            2345789999988873          689999999998865543

>KOG1486|consensus

Probab=99.25  E-value=7.2e-10  Score=79.56  Aligned_cols=159  Identities=21%  Similarity=0.191  Sum_probs=98.4

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC-------hhhHhhc
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF-------PAMQRLS   75 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~   75 (200)
                      ++...+++++|.|++|||||+..+....... .|--++-.........++.  .+++.|.||+-+-       .++....
T Consensus        59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviav  136 (364)
T KOG1486|consen   59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAV  136 (364)
T ss_pred             ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEE
Confidence            4667899999999999999999987644211 1111111111223334444  8999999995431       3444556


Q ss_pred             cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCC-CCC--------------------------------------
Q psy8700          76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANE-LAS--------------------------------------  116 (200)
Q Consensus        76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------------------------------  116 (200)
                      .+.+|.++.|.|++..+.-+.+.  -..+......++. .|+                                      
T Consensus       137 ArtaDlilMvLDatk~e~qr~~l--e~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~N  214 (364)
T KOG1486|consen  137 ARTADLILMVLDATKSEDQREIL--EKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHN  214 (364)
T ss_pred             eecccEEEEEecCCcchhHHHHH--HHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeecc
Confidence            67799999999998765433211  1122222211111 111                                      


Q ss_pred             ------------------------CcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         117 ------------------------IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       117 ------------------------~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                                              .+++.|-||+|..+     ..+...+++.++-  +-+|+..+-|++.+++.|++.+
T Consensus       215 aevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs-----~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l  287 (364)
T KOG1486|consen  215 AEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVS-----IEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEEL  287 (364)
T ss_pred             ceEEEecCCChHHHHHHHhccceEEEEEEEeeccceec-----HHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHh
Confidence                                    17788888888543     3344445555544  5578888899999999999977


Q ss_pred             h
Q psy8700         173 K  173 (200)
Q Consensus       173 ~  173 (200)
                      .
T Consensus       288 ~  288 (364)
T KOG1486|consen  288 N  288 (364)
T ss_pred             c
Confidence            4

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.23  E-value=8.6e-12  Score=86.18  Aligned_cols=80  Identities=19%  Similarity=0.113  Sum_probs=53.8

Q ss_pred             CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH--hCCcEEEecccC
Q psy8700          80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM--WGCHFMETSAKT  157 (200)
Q Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~vSa~~  157 (200)
                      +.-|+|+|++.++..-.          ....  ... ..=++|+||.|+......+.....+..+.  .+.+++++|+++
T Consensus       119 ~~~v~VidvteGe~~P~----------K~gP--~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~kt  185 (202)
T COG0378         119 HLRVVVIDVTEGEDIPR----------KGGP--GIF-KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKT  185 (202)
T ss_pred             ceEEEEEECCCCCCCcc----------cCCC--cee-EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCC
Confidence            47788889887643111          1000  001 12389999999988776654444444444  456999999999


Q ss_pred             CCcHHHHHHHHHHHH
Q psy8700         158 NHNVKELFAELLNLE  172 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~  172 (200)
                      |+|++++++++....
T Consensus       186 g~G~~~~~~~i~~~~  200 (202)
T COG0378         186 GEGLDEWLRFIEPQA  200 (202)
T ss_pred             CcCHHHHHHHHHhhc
Confidence            999999999987653

>KOG0705|consensus

Probab=99.22  E-value=4.4e-11  Score=93.97  Aligned_cols=164  Identities=20%  Similarity=0.353  Sum_probs=126.0

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA   81 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   81 (200)
                      +..-+++|+.++|..++|||+|+.+++.+.|.....| .++.+++.+..++....+.+.|-+|..     ...|..++|+
T Consensus        25 srsipelk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvda   98 (749)
T KOG0705|consen   25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDA   98 (749)
T ss_pred             ecccchhheeeeecccCCceeeeeeeccceeccccCC-cCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccc
Confidence            4566789999999999999999999999998665444 445667777778888889999988832     2457779999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc--c-ccCHHHHHHHHHHhCCcEEEecccCC
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN--R-EVSAAEGEAEAKMWGCHFMETSAKTN  158 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~~~vSa~~~  158 (200)
                      +||||.+.+..+++.+..+...+.....    ...+|+++++++.-....  + ..+.......++...+.||++++..|
T Consensus        99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~----r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyG  174 (749)
T KOG0705|consen   99 VVFVFSVEDEQSFQAVQALAHEMSSYRN----ISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYG  174 (749)
T ss_pred             eEEEEEeccccCHHHHHHHHhhcccccc----cccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhh
Confidence            9999999999999998888877665553    456788888886433211  2 22333345556667789999999999


Q ss_pred             CcHHHHHHHHHHHHhcc
Q psy8700         159 HNVKELFAELLNLEKNR  175 (200)
Q Consensus       159 ~~i~~~~~~i~~~~~~~  175 (200)
                      -++..+|+.+...+...
T Consensus       175 lnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  175 LNVERVFQEVAQKIVQL  191 (749)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            99999999998876544

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.21  E-value=3.1e-10  Score=92.06  Aligned_cols=120  Identities=13%  Similarity=0.111  Sum_probs=72.8

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCC--cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh-------hh---Hh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP-------AM---QR   73 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~---~~   73 (200)
                      -.++|+++|.+|+||||++|++++......  ..+.+..........++  ..+.++||||.....       .+   ..
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            457999999999999999999998653221  11222222122222333  479999999965421       11   11


Q ss_pred             hccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          74 LSIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        74 ~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      .++.  ..|++++|..++.......-..++..+....+.   .--..+|||+|+.|...
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~---~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP---SIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH---HhHcCEEEEEeCCccCC
Confidence            2333  478999998775332221223455556555541   12247899999999875

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>smart00053 DYNc Dynamin, GTPase

Probab=99.19  E-value=4.8e-10  Score=81.72  Aligned_cols=70  Identities=16%  Similarity=0.090  Sum_probs=43.5

Q ss_pred             EEEEEEeCCCCCCC-------------hhhHhhcccc-CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEE
Q psy8700          55 CTLQITDTTGSHQF-------------PAMQRLSISK-GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM  120 (200)
Q Consensus        55 ~~~~~~D~~G~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  120 (200)
                      ..+.++||||....             ..+...|+++ .+.+++|+|+...-.-.....+...+.        ....|++
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld--------~~~~rti  196 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD--------PQGERTI  196 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH--------HcCCcEE
Confidence            47889999996421             2355567774 468888998765322222222222222        2447999


Q ss_pred             EEeeCCCCCccc
Q psy8700         121 LVGNKCDETENR  132 (200)
Q Consensus       121 vv~nK~Dl~~~~  132 (200)
                      +|+||.|..+..
T Consensus       197 ~ViTK~D~~~~~  208 (240)
T smart00053      197 GVITKLDLMDEG  208 (240)
T ss_pred             EEEECCCCCCcc
Confidence            999999987643

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=2.5e-09  Score=81.26  Aligned_cols=84  Identities=18%  Similarity=0.207  Sum_probs=54.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEe------------C----CcEEEEEEEeCCCC---
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISC------------N----KNICTLQITDTTGS---   65 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~------------~----~~~~~~~~~D~~G~---   65 (200)
                      +.++++++|-||+|||||+|+++..... .+|+-++-+.-...+.+            .    .....++|+|.+|.   
T Consensus         1 m~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           1 MSLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             CCceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            3589999999999999999999876643 23332221111111111            1    12357899999993   


Q ss_pred             -CCChhhHhhcc---ccCCEEEEEeeCC
Q psy8700          66 -HQFPAMQRLSI---SKGHAFILVYSCT   89 (200)
Q Consensus        66 -~~~~~~~~~~~---~~~~~~i~v~d~~   89 (200)
                       +.-..+...|+   +.+|+++.|+++.
T Consensus        81 As~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          81 ASKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             cccCCCcchHHHHhhhhcCeEEEEEEec
Confidence             33344555544   4689999999986

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.13  E-value=8.1e-10  Score=86.83  Aligned_cols=116  Identities=19%  Similarity=0.178  Sum_probs=78.4

Q ss_pred             cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC----------hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700          53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS----------RQSLEELRPIWEVIRETKGGANELASIPIMLV  122 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  122 (200)
                      ....+.++|++|+...+..|..++.++++++||+++++          ...+.+.-.++..+.....    ..+.|++|+
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~----~~~~~iil~  309 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW----FKNTPIILF  309 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG----GTTSEEEEE
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc----cccCceEEe
Confidence            34578999999999889999999999999999999863          1334554555555555442    467899999


Q ss_pred             eeCCCCCccc----------------c--cCHHHHHHHHHH------------hCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         123 GNKCDETENR----------------E--VSAAEGEAEAKM------------WGCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       123 ~nK~Dl~~~~----------------~--~~~~~~~~~~~~------------~~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      +||.|+...+                .  ........+...            ..+.++.++|.+..++..+|+.+.+.+
T Consensus       310 lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  310 LNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             EE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             eecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            9999973210                0  122223333221            111355788988899999999887753

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.13  E-value=2.8e-11  Score=89.85  Aligned_cols=55  Identities=15%  Similarity=0.041  Sum_probs=39.3

Q ss_pred             CcEEEEeeCCCCCcccccCHHHHHHHHHH--hCCcEEEecccCCCcHHHHHHHHHHH
Q psy8700         117 IPIMLVGNKCDETENREVSAAEGEAEAKM--WGCHFMETSAKTNHNVKELFAELLNL  171 (200)
Q Consensus       117 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~vSa~~~~~i~~~~~~i~~~  171 (200)
                      .+-++|+||+|+...............+.  ...+++.+|+++|.|++++++||...
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            45699999999975332222222232332  35699999999999999999999773

>KOG0085|consensus

Probab=99.11  E-value=6.9e-11  Score=83.76  Aligned_cols=139  Identities=17%  Similarity=0.177  Sum_probs=90.7

Q ss_pred             CCcCCCcccceeEEE--------EeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCC----------ChhHHH
Q psy8700          34 ESYIPTIEDTYRQVI--------SCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCT----------SRQSLE   95 (200)
Q Consensus        34 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~   95 (200)
                      +.|.|+..+..+..+        .++-+.+.+.+.|.+|+...+..|.+++.+.-.++|++.++          +.+.++
T Consensus       170 ~~ylPTqQDvLRvRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMe  249 (359)
T KOG0085|consen  170 PGYLPTQQDVLRVRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRME  249 (359)
T ss_pred             cccCcchhhhheeecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHH
Confidence            356666554444333        23334567889999999999999999999987777766553          344566


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc----------------ccCHHHHHHHHHH----hCC------c
Q psy8700          96 ELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR----------------EVSAAEGEAEAKM----WGC------H  149 (200)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------------~~~~~~~~~~~~~----~~~------~  149 (200)
                      ....++..+.....    ..+.++++.+||.|+.+.+                ..+.+.+.++...    .+.      .
T Consensus       250 ESkALFrTIi~yPW----F~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~  325 (359)
T KOG0085|consen  250 ESKALFRTIITYPW----FQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIY  325 (359)
T ss_pred             HHHHHHHHHhcccc----ccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceee
Confidence            66666666666554    4668999999999986542                1122222222211    111      1


Q ss_pred             EEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         150 FMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       150 ~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      -..+.|.+.+||+-+|..+.+.+.+.+
T Consensus       326 SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  326 SHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             eeeeecccchhHHHHHHHHHHHHHHhh
Confidence            234778888999999999988876554

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.11  E-value=8.8e-10  Score=82.50  Aligned_cols=138  Identities=17%  Similarity=0.221  Sum_probs=72.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCc---C-------CCcc-cceeEEEEeCCcEEEEEEEeCCCCCCCh------
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESY---I-------PTIE-DTYRQVISCNKNICTLQITDTTGSHQFP------   69 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~---~-------~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~------   69 (200)
                      .++|+|+|..|+|||||+|.|++.......   .       ++.. ........-++..+.+.++||||.....      
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999986542221   0       0111 1111233345677899999999943210      


Q ss_pred             -h-------hHhhcc-------------ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          70 -A-------MQRLSI-------------SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        70 -~-------~~~~~~-------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                       .       ....++             .+.|+++|+++.+.. .+..+.-  ..|....      ...++|=|+.|+|.
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di--~~mk~Ls------~~vNvIPvIaKaD~  154 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDI--EFMKRLS------KRVNVIPVIAKADT  154 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHH--HHHHHHT------TTSEEEEEESTGGG
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHH--HHHHHhc------ccccEEeEEecccc
Confidence             0       000011             135899999987653 2222222  2244444      45789999999998


Q ss_pred             CcccccCHH--HHHHHHHHhCCcEEEe
Q psy8700         129 TENREVSAA--EGEAEAKMWGCHFMET  153 (200)
Q Consensus       129 ~~~~~~~~~--~~~~~~~~~~~~~~~v  153 (200)
                      ....+....  .........++.+|..
T Consensus       155 lt~~el~~~k~~i~~~l~~~~I~~f~f  181 (281)
T PF00735_consen  155 LTPEELQAFKQRIREDLEENNIKIFDF  181 (281)
T ss_dssp             S-HHHHHHHHHHHHHHHHHTT--S---
T ss_pred             cCHHHHHHHHHHHHHHHHHcCceeecc
Confidence            765543322  2222334556655543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG0410|consensus

Probab=99.11  E-value=1.3e-10  Score=86.10  Aligned_cols=153  Identities=19%  Similarity=0.184  Sum_probs=98.4

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC--hhhH------hh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF--PAMQ------RL   74 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~~------~~   74 (200)
                      ....-|+++|..|||||||+++|......  +....|.+.+........+.  .+.+.||-|.-..  ..+.      ..
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~--~vlltDTvGFisdLP~~LvaAF~ATLe  253 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN--FVLLTDTVGFISDLPIQLVAAFQATLE  253 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc--EEEEeechhhhhhCcHHHHHHHHHHHH
Confidence            44567999999999999999999964432  23333443332222222333  6889999994321  2222      22


Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcE----EEEeeCCCCCcccccCHHHHHHHHHHhCCcE
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI----MLVGNKCDETENREVSAAEGEAEAKMWGCHF  150 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  150 (200)
                      ....+|.++.|.|++.|+.-.+....+..+....     .+..|-    +=|=||+|.......        ....+  .
T Consensus       254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~ig-----v~~~pkl~~mieVdnkiD~e~~~~e--------~E~n~--~  318 (410)
T KOG0410|consen  254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIG-----VPSEPKLQNMIEVDNKIDYEEDEVE--------EEKNL--D  318 (410)
T ss_pred             HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcC-----CCcHHHHhHHHhhccccccccccCc--------cccCC--c
Confidence            3447899999999999998888777777776655     233333    344577775332110        00111  5


Q ss_pred             EEecccCCCcHHHHHHHHHHHHhc
Q psy8700         151 METSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      +.+||++|+|++++.+.+......
T Consensus       319 v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  319 VGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             cccccccCccHHHHHHHHHHHhhh
Confidence            789999999999999988776643

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=2.8e-09  Score=82.22  Aligned_cols=157  Identities=15%  Similarity=0.088  Sum_probs=101.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee--EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      -|+-.|.---|||||+..+.+.......-...-+.+.  .....+-....+.|+|.||++++-+....-+...|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            3677888889999999999875532110000001111  11112222338999999999988887777888899999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH--HHHhCCcEEEecccCCCcHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE--AKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      +.++.-..+..+. +. +.+..      .....+||+||+|..+............  ......++|.+|++.|.||.++
T Consensus        82 ~~deGl~~qtgEh-L~-iLdll------gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~L  153 (447)
T COG3276          82 AADEGLMAQTGEH-LL-ILDLL------GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEEL  153 (447)
T ss_pred             eCccCcchhhHHH-HH-HHHhc------CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHH
Confidence            9976543333222 22 33333      2245599999999877543222211111  1233458999999999999999


Q ss_pred             HHHHHHHHh
Q psy8700         165 FAELLNLEK  173 (200)
Q Consensus       165 ~~~i~~~~~  173 (200)
                      -+.|.++..
T Consensus       154 k~~l~~L~~  162 (447)
T COG3276         154 KNELIDLLE  162 (447)
T ss_pred             HHHHHHhhh
Confidence            999999883

>KOG0458|consensus

Probab=99.06  E-value=8e-10  Score=87.60  Aligned_cols=152  Identities=16%  Similarity=0.166  Sum_probs=95.4

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhC--------------------CCCCCc----CCC-----cccce-eEEEEeCCcEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKG--------------------TFRESY----IPT-----IEDTY-RQVISCNKNIC   55 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~--------------------~~~~~~----~~~-----~~~~~-~~~~~~~~~~~   55 (200)
                      ..+..+++|...+|||||+-+|+..                    +.+-.|    ..+     .+.+. ....+++....
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            4588999999999999999998641                    100000    000     11111 12335566667


Q ss_pred             EEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhH---HH---HHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          56 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQS---LE---ELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        56 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      .+++.|.||+..+..-...-...+|+.++|+|++-.+-   |.   +.+.. ..+.+..      .-...+|++||+|+.
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~L------gi~qlivaiNKmD~V  328 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSL------GISQLIVAINKMDLV  328 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHc------CcceEEEEeeccccc
Confidence            99999999988888777777788999999999975432   11   11221 2233322      335789999999997


Q ss_pred             cccccCH-----HHHHHHHHHhC-----CcEEEecccCCCcHHHH
Q psy8700         130 ENREVSA-----AEGEAEAKMWG-----CHFMETSAKTNHNVKEL  164 (200)
Q Consensus       130 ~~~~~~~-----~~~~~~~~~~~-----~~~~~vSa~~~~~i~~~  164 (200)
                      +=.+...     .....+.+..|     +.|+++|+..|.|+...
T Consensus       329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            5322111     12222223334     36999999999997665

>KOG0468|consensus

Probab=99.05  E-value=1.9e-09  Score=86.84  Aligned_cols=118  Identities=24%  Similarity=0.273  Sum_probs=84.1

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCC---------cCCCcccce-e----E----EE---EeCCcEEEEEEE
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES---------YIPTIEDTY-R----Q----VI---SCNKNICTLQIT   60 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~-~----~----~~---~~~~~~~~~~~~   60 (200)
                      +-+.....++++|.-++|||+|+.-|....-+.-         |..+..... +    +    +.   ..++..+.+.+.
T Consensus       123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil  202 (971)
T KOG0468|consen  123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL  202 (971)
T ss_pred             cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence            3456678899999999999999999876432111         111111000 0    0    11   124566889999


Q ss_pred             eCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          61 DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        61 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                      ||||+-.+..-....++-+|++++++|+.+.-.+..-+.+...+.         .+.|+++|+||+|.
T Consensus       203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---------~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---------NRLPIVVVINKVDR  261 (971)
T ss_pred             cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh---------ccCcEEEEEehhHH
Confidence            999999999999999999999999999998877666443333332         45799999999996

>cd01859 MJ1464 MJ1464

Probab=99.04  E-value=8.6e-10  Score=75.79  Aligned_cols=96  Identities=17%  Similarity=0.126  Sum_probs=65.8

Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG  147 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  147 (200)
                      |+.+..+.++++|++++|+|+.++..... ..+...+.        ....|+++|+||+|+.+....  .....+....+
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~--------~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~   70 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL--------ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEG   70 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH--------hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCC
Confidence            46677888889999999999987643322 11111111        134799999999998643221  11112223356


Q ss_pred             CcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         148 CHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       148 ~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      .+++.+||+++.|++++++.+.+.+..
T Consensus        71 ~~~~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          71 IPVVYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             CcEEEEEccccccHHHHHHHHHHHHhh
Confidence            789999999999999999999987753

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01900 YchF YchF subfamily

Probab=99.02  E-value=5.3e-09  Score=77.79  Aligned_cols=80  Identities=19%  Similarity=0.230  Sum_probs=51.0

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCc---------------EEEEEEEeCCCCCCC----h
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKN---------------ICTLQITDTTGSHQF----P   69 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~----~   69 (200)
                      |+++|.|+||||||+|+|++..... +|..++-......+.+.+.               ...++++|+||...-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5899999999999999999866522 2222221222223333322               236999999995431    2


Q ss_pred             hhHhh---ccccCCEEEEEeeCC
Q psy8700          70 AMQRL---SISKGHAFILVYSCT   89 (200)
Q Consensus        70 ~~~~~---~~~~~~~~i~v~d~~   89 (200)
                      .+...   .++++|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            33333   345799999999873

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG1487|consensus

Probab=98.98  E-value=6.6e-09  Score=75.00  Aligned_cols=154  Identities=19%  Similarity=0.128  Sum_probs=96.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEE--eCCcEEEEEEEeCCCCCC-------ChhhHhhccc
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVIS--CNKNICTLQITDTTGSHQ-------FPAMQRLSIS   77 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~   77 (200)
                      ..++.++|.|++||||++..|.+...   ..+...+++..++.  ..-+..++++.|.||.-+       ...+.....+
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~s---~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavar  135 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTFS---EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVAR  135 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCCC---ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEee
Confidence            45899999999999999999988442   22333333333221  112334899999999542       2344555667


Q ss_pred             cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCC--------------------------------------------
Q psy8700          78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANE--------------------------------------------  113 (200)
Q Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------  113 (200)
                      .++.+++|.|+.-|-+-..+..  .+++....+++.                                            
T Consensus       136 tcnli~~vld~~kp~~hk~~ie--~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr  213 (358)
T KOG1487|consen  136 TCNLIFIVLDVLKPLSHKKIIE--KELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALR  213 (358)
T ss_pred             cccEEEEEeeccCcccHHHHHH--HhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeee
Confidence            7899999999876544333222  111111110000                                            


Q ss_pred             -------------CC--CCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         114 -------------LA--SIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       114 -------------~~--~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                                   .+  -.|.+.++||+|.+.-.+.+-.       ......+.+||..+.|++++++.+++.+
T Consensus       214 ~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdii-------~~iphavpISA~~~wn~d~lL~~mweyL  280 (358)
T KOG1487|consen  214 FDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDII-------YTIPHAVPISAHTGWNFDKLLEKMWEYL  280 (358)
T ss_pred             cCcchhhhhhhhccCceeeeeeeeecccceeeeecccee-------eeccceeecccccccchHHHHHHHhhcc
Confidence                         01  2388888899987653332211       1223678899999999999999999876

>KOG1144|consensus

Probab=98.98  E-value=5.6e-09  Score=85.06  Aligned_cols=161  Identities=17%  Similarity=0.213  Sum_probs=99.7

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEE-EEe------------C----CcEEEEEEEeCCCCCCC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV-ISC------------N----KNICTLQITDTTGSHQF   68 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~------------~----~~~~~~~~~D~~G~~~~   68 (200)
                      ...-++++|....|||-|+..+-+.+.....-.++....-.+ +..            +    -..--+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            346689999999999999999977554322222211111000 000            0    11125678999999999


Q ss_pred             hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc-----c-cccC-------
Q psy8700          69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE-----N-REVS-------  135 (200)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-----~-~~~~-------  135 (200)
                      ..++.....-||.+|+|+|+..+-.-+.+..+ +.+.        ..+.|+||.+||+|-.=     + ..+.       
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi-~lLR--------~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~  624 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-NLLR--------MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK  624 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhHHH-HHHH--------hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence            99999999999999999998753222222221 1122        24589999999999521     0 0000       


Q ss_pred             ---HHHH--------HHH-HHHhC-------------CcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         136 ---AAEG--------EAE-AKMWG-------------CHFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       136 ---~~~~--------~~~-~~~~~-------------~~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                         ..+.        .+| .+.++             +.++++||..|+||.+++.+|+++...+
T Consensus       625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~  689 (1064)
T KOG1144|consen  625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT  689 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence               0000        000 01111             1367899999999999999999876543

>KOG3887|consensus

Probab=98.98  E-value=1.5e-08  Score=72.52  Aligned_cols=169  Identities=17%  Similarity=0.155  Sum_probs=100.4

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEE-EeCCcEEEEEEEeCCCCCCCh---hhHhhccccC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVI-SCNKNICTLQITDTTGSHQFP---AMQRLSISKG   79 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~G~~~~~---~~~~~~~~~~   79 (200)
                      .....+|+++|-..||||| |.+..-.+.+++..--.+.+.+.+- .+.+.-+.+++||.||+..+-   --....++.+
T Consensus        24 ~~~kp~ilLMG~rRsGKsS-I~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~  102 (347)
T KOG3887|consen   24 SGMKPRILLMGLRRSGKSS-IQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGV  102 (347)
T ss_pred             CCCCceEEEEeecccCcch-hhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhcc
Confidence            3345789999999999999 4444444443332211111111111 122344689999999987542   2334577889


Q ss_pred             CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH--HH----HHHHHHhC-----C
Q psy8700          80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA--EG----EAEAKMWG-----C  148 (200)
Q Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~~----~~~~~~~~-----~  148 (200)
                      .++++|+|+.+. -++.+..+...+.+..+   --+++.+-|.+.|.|.....-..+.  ..    .......|     .
T Consensus       103 gALifvIDaQdd-y~eala~L~~~v~rayk---vNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~v  178 (347)
T KOG3887|consen  103 GALIFVIDAQDD-YMEALARLHMTVERAYK---VNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQV  178 (347)
T ss_pred             CeEEEEEechHH-HHHHHHHHHHHhhheee---cCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceE
Confidence            999999998764 34444444444444333   3477888999999998653211111  11    11111222     2


Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHhccchh
Q psy8700         149 HFMETSAKTNHNVKELFAELLNLEKNRNIS  178 (200)
Q Consensus       149 ~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~  178 (200)
                      .|+.+|.. ...|.|+|..+.+.+..+-..
T Consensus       179 sf~LTSIy-DHSIfEAFSkvVQkLipqLpt  207 (347)
T KOG3887|consen  179 SFYLTSIY-DHSIFEAFSKVVQKLIPQLPT  207 (347)
T ss_pred             EEEEeeec-chHHHHHHHHHHHHHhhhchh
Confidence            46667664 456999999999877655443

>cd01855 YqeH YqeH

Probab=98.98  E-value=4.7e-09  Score=74.52  Aligned_cols=94  Identities=20%  Similarity=0.148  Sum_probs=64.8

Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH----
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA----  143 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----  143 (200)
                      +..+...+++++|++++|+|+.++...     |...+...      ....|+++|+||+|+..... .......+.    
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~------~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~   91 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF------GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKA   91 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh------cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHH
Confidence            477888899999999999999876421     11112111      24579999999999975332 222222222    


Q ss_pred             -HHhCC---cEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         144 -KMWGC---HFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       144 -~~~~~---~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                       ...+.   .++.+||+++.|++++++.|.+.+.
T Consensus        92 ~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          92 AAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence             22332   6899999999999999999998764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0099|consensus

Probab=98.97  E-value=4.9e-09  Score=75.71  Aligned_cols=122  Identities=18%  Similarity=0.246  Sum_probs=82.7

Q ss_pred             cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC----------hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700          53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS----------RQSLEELRPIWEVIRETKGGANELASIPIMLV  122 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  122 (200)
                      ..++++++|.+|+...+..|..++...-++|||+..++          .+.++....++..+++...    ...+-+|+.
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRw----L~tisvIlF  275 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRW----LRTISVILF  275 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhH----HhhhheeEE
Confidence            34579999999999999999999999999999998864          2234444455555555553    455788999


Q ss_pred             eeCCCCCcccc------------------------------cCHHHHHHHHHH----------hC---CcEEEecccCCC
Q psy8700         123 GNKCDETENRE------------------------------VSAAEGEAEAKM----------WG---CHFMETSAKTNH  159 (200)
Q Consensus       123 ~nK~Dl~~~~~------------------------------~~~~~~~~~~~~----------~~---~~~~~vSa~~~~  159 (200)
                      +||.|+...+.                              .....++.+.+.          .|   |.+..+.|.+-.
T Consensus       276 LNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTe  355 (379)
T KOG0099|consen  276 LNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE  355 (379)
T ss_pred             ecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechH
Confidence            99999843210                              000111111111          11   234557788888


Q ss_pred             cHHHHHHHHHHHHhccchh
Q psy8700         160 NVKELFAELLNLEKNRNIS  178 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~~~~~  178 (200)
                      +|+.+|+...+.+...+..
T Consensus       356 nIrrVFnDcrdiIqr~hlr  374 (379)
T KOG0099|consen  356 NIRRVFNDCRDIIQRMHLR  374 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999988776653

>PRK12289 GTPase RsgA; Reviewed

Probab=98.97  E-value=2.7e-09  Score=82.16  Aligned_cols=94  Identities=18%  Similarity=0.270  Sum_probs=67.5

Q ss_pred             CChhhHhhccccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH
Q psy8700          67 QFPAMQRLSISKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM  145 (200)
Q Consensus        67 ~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  145 (200)
                      +.+.+.+..+.++|.+++|+|+.++. ....+..|+..+..        ...|++||+||+|+.+..+.  .........
T Consensus        78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--------~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~  147 (352)
T PRK12289         78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--------TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQ  147 (352)
T ss_pred             cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--------CCCCEEEEEEchhcCChHHH--HHHHHHHHh
Confidence            34455566788999999999998875 44455666544422        44899999999999753321  112223345


Q ss_pred             hCCcEEEecccCCCcHHHHHHHHHH
Q psy8700         146 WGCHFMETSAKTNHNVKELFAELLN  170 (200)
Q Consensus       146 ~~~~~~~vSa~~~~~i~~~~~~i~~  170 (200)
                      +++.++.+||+++.|++++++.+..
T Consensus       148 ~g~~v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        148 WGYQPLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             cCCeEEEEEcCCCCCHHHHhhhhcc
Confidence            6789999999999999999998865

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=1.1e-08  Score=84.87  Aligned_cols=117  Identities=16%  Similarity=0.142  Sum_probs=82.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCC---cCC-------Cc------cccee---EEEEeCCcEEEEEEEeCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRES---YIP-------TI------EDTYR---QVISCNKNICTLQITDTTGS   65 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~---~~~-------~~------~~~~~---~~~~~~~~~~~~~~~D~~G~   65 (200)
                      .+.-+|.++|...+|||||..+++...-...   ...       ..      +-+..   .+....+ .+.+.++||||+
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH   86 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH   86 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence            4567899999999999999999975321000   000       00      00010   1222222 578999999999


Q ss_pred             CCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700          66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN  131 (200)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  131 (200)
                      -++..-....++-.|++++|+|+.+.-..+. ...|.....        .+.|.++++||+|....
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~--------~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADK--------YGVPRILFVNKMDRLGA  143 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhh--------cCCCeEEEEECcccccc
Confidence            9999999999999999999999998765444 444544444        34899999999998654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.94  E-value=4.3e-09  Score=79.31  Aligned_cols=89  Identities=21%  Similarity=0.180  Sum_probs=67.0

Q ss_pred             HhhccccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcE
Q psy8700          72 QRLSISKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHF  150 (200)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  150 (200)
                      ....+.++|.+++|+|+.++. ++..+..|+..+..        .+.|+++|+||+|+.+..+  ...........++++
T Consensus        72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--------~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v  141 (287)
T cd01854          72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--------AGIEPVIVLTKADLLDDEE--EELELVEALALGYPV  141 (287)
T ss_pred             ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--------cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeE
Confidence            344688999999999999987 77777777765553        2379999999999965421  122233334467899


Q ss_pred             EEecccCCCcHHHHHHHHHH
Q psy8700         151 METSAKTNHNVKELFAELLN  170 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~  170 (200)
                      +.+||+++.|+++++..+..
T Consensus       142 ~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         142 LAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             EEEECCCCccHHHHHhhhcc
Confidence            99999999999999887764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=1.2e-08  Score=78.79  Aligned_cols=133  Identities=18%  Similarity=0.247  Sum_probs=87.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhh--CCCCC--------CcCCC----------cc-cceeEEEEeCCcEEEEEEEeCCCCCC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK--GTFRE--------SYIPT----------IE-DTYRQVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~--~~~~~--------~~~~~----------~~-~~~~~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      .-+++-.|.+|||||..+|+.  +....        ....+          .+ ..+...+.++-....+.+.||||++.
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD   93 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED   93 (528)
T ss_pred             ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence            468899999999999999863  11110        00011          01 22234556677778999999999999


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG  147 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  147 (200)
                      +..-...-+..+|..+.|+|+..+-.-+. .++++...        ..++|++=++||.|-.....  .....+..+..+
T Consensus        94 FSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcr--------lR~iPI~TFiNKlDR~~rdP--~ELLdEiE~~L~  162 (528)
T COG4108          94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCR--------LRDIPIFTFINKLDREGRDP--LELLDEIEEELG  162 (528)
T ss_pred             cchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHh--------hcCCceEEEeeccccccCCh--HHHHHHHHHHhC
Confidence            98888888889999999999876532222 33333322        45699999999999765443  334455555666


Q ss_pred             CcEEE
Q psy8700         148 CHFME  152 (200)
Q Consensus       148 ~~~~~  152 (200)
                      +..++
T Consensus       163 i~~~P  167 (528)
T COG4108         163 IQCAP  167 (528)
T ss_pred             cceec
Confidence            54333

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.90  E-value=5.5e-09  Score=70.57  Aligned_cols=54  Identities=24%  Similarity=0.226  Sum_probs=36.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc--eeEEEEeCCcEEEEEEEeCCCCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT--YRQVISCNKNICTLQITDTTGSH   66 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~   66 (200)
                      -+++++|.+|+|||||+|++.+.....  ....++.  ....+..++   .+.+|||||..
T Consensus        84 ~~~~~~G~~~vGKstlin~l~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~i~DtpG~~  139 (141)
T cd01857          84 ATIGLVGYPNVGKSSLINALVGKKKVS--VSATPGKTKHFQTIFLTP---TITLCDCPGLV  139 (141)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcee--eCCCCCcccceEEEEeCC---CEEEEECCCcC
Confidence            389999999999999999999876532  1111111  122333333   47999999953

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.88  E-value=7.1e-09  Score=72.19  Aligned_cols=55  Identities=24%  Similarity=0.325  Sum_probs=37.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee--EEEEeCCcEEEEEEEeCCCC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGS   65 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~   65 (200)
                      ..++++++|.||+|||||+|+|.+.....  ....+++++  ..+..+.   .+.++||||.
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~--~~~~pg~T~~~~~~~~~~---~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACN--VGATPGVTKSMQEVHLDK---KVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccce--ecCCCCeEcceEEEEeCC---CEEEEECcCC
Confidence            45899999999999999999999865421  112222222  2222222   5889999994

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK12288 GTPase RsgA; Reviewed

Probab=98.88  E-value=1.5e-08  Score=78.04  Aligned_cols=88  Identities=18%  Similarity=0.152  Sum_probs=66.1

Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC-HHHHHHHHHHhCCcEEEe
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS-AAEGEAEAKMWGCHFMET  153 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~v  153 (200)
                      ...++|.+++|++.....++..+..|+.....        ...|++||+||+|+....+.. ...........+++++++
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--------~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~v  188 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET--------LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMV  188 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--------cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEE
Confidence            35789999999999888888888888764432        347999999999997543211 112222334567899999


Q ss_pred             cccCCCcHHHHHHHHHH
Q psy8700         154 SAKTNHNVKELFAELLN  170 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~  170 (200)
                      ||+++.|++++++.+..
T Consensus       189 SA~tg~GideL~~~L~~  205 (347)
T PRK12288        189 SSHTGEGLEELEAALTG  205 (347)
T ss_pred             eCCCCcCHHHHHHHHhh
Confidence            99999999999998865

>PRK00098 GTPase RsgA; Reviewed

Probab=98.85  E-value=1.4e-08  Score=76.96  Aligned_cols=86  Identities=23%  Similarity=0.200  Sum_probs=61.1

Q ss_pred             ccccCCEEEEEeeCCChhHHHH-HHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEe
Q psy8700          75 SISKGHAFILVYSCTSRQSLEE-LRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMET  153 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v  153 (200)
                      .+.++|.+++|+|+.++..... +..|+..+..        .+.|+++|+||+|+.+..+. ...........+++++.+
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--------~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~v  147 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--------NGIKPIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLEL  147 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--------CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEE
Confidence            4689999999999988765444 3455444332        34799999999999633221 122233344567899999


Q ss_pred             cccCCCcHHHHHHHHH
Q psy8700         154 SAKTNHNVKELFAELL  169 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~  169 (200)
                      ||+++.|++++++.+.
T Consensus       148 SA~~g~gi~~L~~~l~  163 (298)
T PRK00098        148 SAKEGEGLDELKPLLA  163 (298)
T ss_pred             eCCCCccHHHHHhhcc
Confidence            9999999999998764

>cd01858 NGP_1 NGP-1

Probab=98.85  E-value=1.1e-08  Score=70.41  Aligned_cols=56  Identities=18%  Similarity=0.207  Sum_probs=36.4

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeC-CcEEEEEEEeCCCC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCN-KNICTLQITDTTGS   65 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~   65 (200)
                      ...+|+++|.||+|||||+|+|.+...  ......+++++...... +.  .+.++||||.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~--~~~~~~~g~T~~~~~~~~~~--~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKV--CKVAPIPGETKVWQYITLMK--RIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCc--eeeCCCCCeeEeEEEEEcCC--CEEEEECcCC
Confidence            467899999999999999999988553  11222222332222211 12  3789999993

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.83  E-value=6.2e-08  Score=73.39  Aligned_cols=138  Identities=16%  Similarity=0.258  Sum_probs=79.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCC----------cCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCC------
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRES----------YIPTIE-DTYRQVISCNKNICTLQITDTTGSHQ------   67 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~------   67 (200)
                      .-.+.|+++|+.|.|||||+|.|++......          ..++.. ..+...+.-++....+.++||||.-+      
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            3468999999999999999999998643222          111111 11122334467778999999999322      


Q ss_pred             -Ch-------hhHhhccc--------------cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700          68 -FP-------AMQRLSIS--------------KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK  125 (200)
Q Consensus        68 -~~-------~~~~~~~~--------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  125 (200)
                       |.       .....|+.              ++++++|.+..+.. .+..+.-..  |.+..      ....+|=|+.|
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~--Mk~ls------~~vNlIPVI~K  171 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEA--MKRLS------KRVNLIPVIAK  171 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHH--HHHHh------cccCeeeeeec
Confidence             11       11111111              35888888876543 333333222  44433      33567778899


Q ss_pred             CCCCcccccCH--HHHHHHHHHhCCcEE
Q psy8700         126 CDETENREVSA--AEGEAEAKMWGCHFM  151 (200)
Q Consensus       126 ~Dl~~~~~~~~--~~~~~~~~~~~~~~~  151 (200)
                      +|.....+...  ....+....+++++|
T Consensus       172 aD~lT~~El~~~K~~I~~~i~~~nI~vf  199 (373)
T COG5019         172 ADTLTDDELAEFKERIREDLEQYNIPVF  199 (373)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHhCCcee
Confidence            99865443322  122333445566655

>KOG1954|consensus

Probab=98.81  E-value=4.6e-08  Score=74.11  Aligned_cols=120  Identities=19%  Similarity=0.305  Sum_probs=77.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc--cceeEEEEeC------CcE----------------------
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE--DTYRQVISCN------KNI----------------------   54 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~------~~~----------------------   54 (200)
                      +...-|+++|.=+.||||||+.|+...|+...+...+  +.+...++.+      |..                      
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            4567899999999999999999999887533222211  1111222111      111                      


Q ss_pred             -----------EEEEEEeCCCCC-----------CChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCC
Q psy8700          55 -----------CTLQITDTTGSH-----------QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGAN  112 (200)
Q Consensus        55 -----------~~~~~~D~~G~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  112 (200)
                                 -.+.++||||.-           .+......+..++|.++++||..--+........   +....+   
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~v---i~aLkG---  209 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRV---IDALKG---  209 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHH---HHHhhC---
Confidence                       157799999932           3456778888999999999997644333333333   333332   


Q ss_pred             CCCCCcEEEEeeCCCCCccc
Q psy8700         113 ELASIPIMLVGNKCDETENR  132 (200)
Q Consensus       113 ~~~~~p~ivv~nK~Dl~~~~  132 (200)
                        .+-.+-||+||+|..+..
T Consensus       210 --~EdkiRVVLNKADqVdtq  227 (532)
T KOG1954|consen  210 --HEDKIRVVLNKADQVDTQ  227 (532)
T ss_pred             --CcceeEEEeccccccCHH
Confidence              445788999999987644

>KOG2655|consensus

Probab=98.80  E-value=1.4e-07  Score=71.96  Aligned_cols=142  Identities=18%  Similarity=0.267  Sum_probs=81.5

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCC--c------CC-Ccc-cceeEEEEeCCcEEEEEEEeCCCCCC-------C
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRES--Y------IP-TIE-DTYRQVISCNKNICTLQITDTTGSHQ-------F   68 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~------~~-~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~-------~   68 (200)
                      -.+.++++|+.|.|||||+|+|+.......  +      .+ +.. ..+.....-++..+++.++||||.-+       |
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            358999999999999999999987643221  0      00 111 11112223356778999999999321       1


Q ss_pred             h-------hhHhh-----------ccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          69 P-------AMQRL-----------SIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        69 ~-------~~~~~-----------~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                      .       +....           -+.  ++++++|.+..+.. .+..+....  +....      ....+|=|+-|+|.
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~--Mk~l~------~~vNiIPVI~KaD~  170 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEF--MKKLS------KKVNLIPVIAKADT  170 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHH--HHHHh------ccccccceeecccc
Confidence            1       11111           222  46899998876543 233333222  33333      44677888899998


Q ss_pred             CcccccCHH--HHHHHHHHhCCcEEEeccc
Q psy8700         129 TENREVSAA--EGEAEAKMWGCHFMETSAK  156 (200)
Q Consensus       129 ~~~~~~~~~--~~~~~~~~~~~~~~~vSa~  156 (200)
                      ....+....  .........++++|.....
T Consensus       171 lT~~El~~~K~~I~~~i~~~nI~vf~fp~~  200 (366)
T KOG2655|consen  171 LTKDELNQFKKRIRQDIEEHNIKVFDFPTD  200 (366)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCcceecCCCC
Confidence            765543322  2333344566766665543

>KOG0448|consensus

Probab=98.80  E-value=1.7e-07  Score=75.98  Aligned_cols=93  Identities=15%  Similarity=0.158  Sum_probs=55.5

Q ss_pred             EEEEEeCCCCCC---ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700          56 TLQITDTTGSHQ---FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR  132 (200)
Q Consensus        56 ~~~~~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  132 (200)
                      .+.++|.||.+.   ...-...+..++|++|+|.++.+.-+......+.    ...     ..+..++|+.||+|.....
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~----~vs-----~~KpniFIlnnkwDasase  277 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFH----KVS-----EEKPNIFILNNKWDASASE  277 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHH----Hhh-----ccCCcEEEEechhhhhccc
Confidence            678899999653   3444555667899999999887765544433322    222     1246788999999986654


Q ss_pred             ccCHHHHHHHHHHh--------CCcEEEecccC
Q psy8700         133 EVSAAEGEAEAKMW--------GCHFMETSAKT  157 (200)
Q Consensus       133 ~~~~~~~~~~~~~~--------~~~~~~vSa~~  157 (200)
                      +....+......+.        .-.+|.||++.
T Consensus       278 ~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  278 PECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             HHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            33322222222222        22578888543

>cd01855 YqeH YqeH

Probab=98.76  E-value=1.7e-08  Score=71.65  Aligned_cols=58  Identities=28%  Similarity=0.248  Sum_probs=36.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCC------CcCCCcccceeEEEEeCCcEEEEEEEeCCCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRE------SYIPTIEDTYRQVISCNKNICTLQITDTTGS   65 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~   65 (200)
                      ..+++++|.+|+|||||+|+|.+.....      ......+++++....+.... .+.++||||.
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcCC
Confidence            4689999999999999999999754311      12222233333322221111 4799999994

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG2486|consensus

Probab=98.76  E-value=1.5e-08  Score=73.91  Aligned_cols=157  Identities=14%  Similarity=0.132  Sum_probs=90.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCC-CcccceeEEEEeCCcEEEEEEEeCCCC----------CCChhhH
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIP-TIEDTYRQVISCNKNICTLQITDTTGS----------HQFPAMQ   72 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~   72 (200)
                      ++....+++.|..|+|||||+|.+........... ..+.+.......-+.  ...++|.||.          ..+....
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~--~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK--SWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc--eEEEEecCCcccccCCccCcchHhHhH
Confidence            46679999999999999999999987554322222 344443332222222  5889999991          2334455


Q ss_pred             hhccccCC---EEEEEeeCCChhHHHHHHH-HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------ccCHHH--HH
Q psy8700          73 RLSISKGH---AFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNKCDETENR------EVSAAE--GE  140 (200)
Q Consensus        73 ~~~~~~~~---~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~--~~  140 (200)
                      ..|+-+-+   .+++.+|++-+  ++.... ..+++.+        ...|+.+|+||+|.....      ......  ..
T Consensus       211 ~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge--------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~  280 (320)
T KOG2486|consen  211 KSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE--------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQ  280 (320)
T ss_pred             HHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh--------cCCCeEEeeehhhhhhhccccccCccccceeehh
Confidence            55554432   33344444422  111111 1112332        458999999999975321      111111  11


Q ss_pred             HHHH---HhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         141 AEAK---MWGCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       141 ~~~~---~~~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      .+.+   ....|++.+|+-++.|+++++-.|.+..
T Consensus       281 ~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~  315 (320)
T KOG2486|consen  281 GLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLR  315 (320)
T ss_pred             hccccceeccCCceeeecccccCceeeeeehhhhh
Confidence            1111   1224788899999999999887776644

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=1.8e-07  Score=68.96  Aligned_cols=163  Identities=15%  Similarity=0.129  Sum_probs=100.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh---CC-------CCC--CcCCCcc-cce--eEEEEeCCcEEEEEEEeCCCCCCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK---GT-------FRE--SYIPTIE-DTY--RQVISCNKNICTLQITDTTGSHQF   68 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~---~~-------~~~--~~~~~~~-~~~--~~~~~~~~~~~~~~~~D~~G~~~~   68 (200)
                      .-+.++|..+|...-|||||..++..   ..       |..  +...... +.+  ...+..+..+.....+|+||+..|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            34568999999999999999888753   11       100  0000000 111  123333444567889999999988


Q ss_pred             hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH---HHHHHHHH
Q psy8700          69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA---EGEAEAKM  145 (200)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~  145 (200)
                      -.....-....|+.|+|++++|...-+..+..+  +.+..+      -..+++++||+|+.+..+....   +..++...
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--larqvG------vp~ivvflnK~Dmvdd~ellelVemEvreLLs~  160 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LARQVG------VPYIVVFLNKVDMVDDEELLELVEMEVRELLSE  160 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhhhcC------CcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence            777777777889999999999865544444433  333332      2356788899999875543322   23334444


Q ss_pred             hCC-----cEEEecccC---C-----CcHHHHHHHHHHHHhc
Q psy8700         146 WGC-----HFMETSAKT---N-----HNVKELFAELLNLEKN  174 (200)
Q Consensus       146 ~~~-----~~~~vSa~~---~-----~~i~~~~~~i~~~~~~  174 (200)
                      +++     |++.-||+.   |     ..|.++++.+-+++..
T Consensus       161 y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~  202 (394)
T COG0050         161 YGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT  202 (394)
T ss_pred             cCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence            543     677666442   2     2367777777776643

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=1.2e-07  Score=75.68  Aligned_cols=138  Identities=14%  Similarity=0.117  Sum_probs=85.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      -++++-++++||||.||||||++|...-.    ..++.+..-....+.+.+..+.|.++|.   ..........-+|.++
T Consensus        66 ~PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTvvsgK~RRiTflEcp~---Dl~~miDvaKIaDLVl  138 (1077)
T COG5192          66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITVVSGKTRRITFLECPS---DLHQMIDVAKIADLVL  138 (1077)
T ss_pred             CCCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEEeecceeEEEEEeChH---HHHHHHhHHHhhheeE
Confidence            45678899999999999999999986322    1122222222334467888999999994   2333344556689999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH-----HHHHHHH-HhCCcEEEeccc
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA-----EGEAEAK-MWGCHFMETSAK  156 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-----~~~~~~~-~~~~~~~~vSa~  156 (200)
                      +++|.+-+-.+.....+ + +....+      -..++-|+|..|+-....-...     ....+.. ..|+.+|..|..
T Consensus       139 LlIdgnfGfEMETmEFL-n-il~~HG------mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV  209 (1077)
T COG5192         139 LLIDGNFGFEMETMEFL-N-ILISHG------MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV  209 (1077)
T ss_pred             EEeccccCceehHHHHH-H-HHhhcC------CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence            99999877666654332 2 333332      1346678899998653211111     1122222 346778888743

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.73  E-value=4.9e-08  Score=73.31  Aligned_cols=56  Identities=25%  Similarity=0.350  Sum_probs=37.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee--EEEEeCCcEEEEEEEeCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGS   65 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~   65 (200)
                      ...++++++|.||+|||||+|+|.+......  ...+++++  ..+..+.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~--~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV--GNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccc--CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            3568999999999999999999997653211  11222222  2233322   4789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01856 YlqF YlqF

Probab=98.71  E-value=4.9e-08  Score=68.14  Aligned_cols=57  Identities=26%  Similarity=0.229  Sum_probs=37.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGS   65 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~   65 (200)
                      +..++++++|.+|+|||||+|++.+...... .+..+.+. ...+..+   ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            3457999999999999999999998665211 11111111 1222332   35789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01859 MJ1464 MJ1464

Probab=98.71  E-value=5.8e-08  Score=66.69  Aligned_cols=58  Identities=24%  Similarity=0.258  Sum_probs=38.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEE-EEeCCcEEEEEEEeCCCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV-ISCNKNICTLQITDTTGS   65 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~G~   65 (200)
                      .....+++++|.+|+|||||+|++.+... ..+.++.+.+.... ...+.   .+.+|||||.
T Consensus        98 ~~~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi  156 (156)
T cd01859          98 DGKEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPGV  156 (156)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence            34568999999999999999999987542 22333333322222 22222   5899999993

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG1547|consensus

Probab=98.71  E-value=3e-07  Score=65.92  Aligned_cols=151  Identities=19%  Similarity=0.221  Sum_probs=80.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCC----ccccee---EE--EEeCCcEEEEEEEeCCCCCC-------C-
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPT----IEDTYR---QV--ISCNKNICTLQITDTTGSHQ-------F-   68 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~----~~~~~~---~~--~~~~~~~~~~~~~D~~G~~~-------~-   68 (200)
                      .++|+++|.+|.||||++|.+........ ..+.    .+.+..   .+  +.-++...++.++||||.-.       | 
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            58999999999999999999976443221 1111    111111   11  12244557889999999321       1 


Q ss_pred             ------hhhHhhccc--------------cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          69 ------PAMQRLSIS--------------KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        69 ------~~~~~~~~~--------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                            +.+...|++              +++++++.+..+.. +++.+.-.+  +.+..      .-..++=|+-|+|-
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDief--lkrLt------~vvNvvPVIakaDt  196 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEF--LKRLT------EVVNVVPVIAKADT  196 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHH--HHHHh------hhheeeeeEeeccc
Confidence                  112222222              25788888776643 333332221  22222      22456778899996


Q ss_pred             Ccccc--cCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700         129 TENRE--VSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus       129 ~~~~~--~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      ..-.+  .-.+.........++.+|+-.+.+-+.=+..++
T Consensus       197 lTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN  236 (336)
T KOG1547|consen  197 LTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN  236 (336)
T ss_pred             ccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence            53222  122233333445677777766555443333333

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.70  E-value=7.2e-08  Score=72.78  Aligned_cols=57  Identities=25%  Similarity=0.341  Sum_probs=38.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE--EEEeCCcEEEEEEEeCCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNICTLQITDTTGSH   66 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~G~~   66 (200)
                      ...++++++|.||+|||||+|+|.+.....  ....+++++.  .+..+.   .+.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~--~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAK--TGNRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccc--cCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            356899999999999999999999865421  1222222322  222222   48899999964

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.68  E-value=3.7e-07  Score=80.84  Aligned_cols=112  Identities=21%  Similarity=0.192  Sum_probs=68.6

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCC------cCCCcccceeEEEEeCCcEEEEEEEeCCCCC--------CChhhHhhc
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKGTFRES------YIPTIEDTYRQVISCNKNICTLQITDTTGSH--------QFPAMQRLS   75 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~   75 (200)
                      .+|+|++|+||||++++- +-.++-.      .....+.+......+.++   -.++||+|..        .....+..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence            589999999999999986 3222111      111122222223334344   5699999921        122333333


Q ss_pred             c---------ccCCEEEEEeeCCCh-----h----HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          76 I---------SKGHAFILVYSCTSR-----Q----SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        76 ~---------~~~~~~i~v~d~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      +         +..+++|+++|+.+-     .    .-..++..+..+.+..+     -..|+.|++||+|+..
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-----~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-----ARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEecchhhc
Confidence            3         247999999997642     1    12345555666666664     6799999999999874

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.67  E-value=4.3e-07  Score=69.32  Aligned_cols=159  Identities=21%  Similarity=0.165  Sum_probs=95.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCC----------cc-----cceeEEEEeC-----------------
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT----------IE-----DTYRQVISCN-----------------   51 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~----------~~-----~~~~~~~~~~-----------------   51 (200)
                      .+..+.++..|....|||||+-.|..+..+.....+          ..     +.....+-++                 
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            456788999999999999998888654433211111          00     0000011111                 


Q ss_pred             ----CcEEEEEEEeCCCCCCChhhH--hhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700          52 ----KNICTLQITDTTGSHQFPAMQ--RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK  125 (200)
Q Consensus        52 ----~~~~~~~~~D~~G~~~~~~~~--~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  125 (200)
                          .....+.|+||.|++.|.+..  -.+-++.|..++++.+++.-+--. ..-+-.+.        ..+.|+++++||
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~--------a~~lPviVvvTK  264 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL--------AMELPVIVVVTK  264 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh--------hhcCCEEEEEEe
Confidence                112367899999999887643  346667899999999988654222 22222222        244899999999


Q ss_pred             CCCCcccccCHHH--H----------------------HHHHHHhC---CcEEEecccCCCcHHHHHHHHHHH
Q psy8700         126 CDETENREVSAAE--G----------------------EAEAKMWG---CHFMETSAKTNHNVKELFAELLNL  171 (200)
Q Consensus       126 ~Dl~~~~~~~~~~--~----------------------~~~~~~~~---~~~~~vSa~~~~~i~~~~~~i~~~  171 (200)
                      +|+..........  .                      ...+...+   .|+|.+|+-+|.|++-+.+.+..+
T Consensus       265 ~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L  337 (527)
T COG5258         265 IDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL  337 (527)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence            9986542111100  0                      01111112   389999999999987666655543

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.67  E-value=2.5e-06  Score=66.28  Aligned_cols=159  Identities=14%  Similarity=0.200  Sum_probs=90.0

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh-----------------CCCCC-----CcCCCcccce---eEEEEe-CCcEEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK-----------------GTFRE-----SYIPTIEDTY---RQVISC-NKNICTL   57 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~-----------------~~~~~-----~~~~~~~~~~---~~~~~~-~~~~~~~   57 (200)
                      ....+=|+++||...||||||+||..                 +..+.     ....+.+-+.   ...+.+ ++..+++
T Consensus        14 T~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kV   93 (492)
T PF09547_consen   14 TGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKV   93 (492)
T ss_pred             cCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEE
Confidence            45678899999999999999999843                 11111     1111111111   122333 4667899


Q ss_pred             EEEeCCCCC-----------CChhhHhhccc--------------------cCCEEEEEeeCC--C--hhH-HHHHHHHH
Q psy8700          58 QITDTTGSH-----------QFPAMQRLSIS--------------------KGHAFILVYSCT--S--RQS-LEELRPIW  101 (200)
Q Consensus        58 ~~~D~~G~~-----------~~~~~~~~~~~--------------------~~~~~i~v~d~~--~--~~~-~~~~~~~~  101 (200)
                      .++|+-|..           ..+-....++.                    ..-++++.-|.+  +  ++. ...-+...
T Consensus        94 RLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI  173 (492)
T PF09547_consen   94 RLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVI  173 (492)
T ss_pred             EEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHH
Confidence            999999911           00111111111                    123555555543  2  222 22233344


Q ss_pred             HHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCC--CcHHHHHHHHHHHH
Q psy8700         102 EVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTN--HNVKELFAELLNLE  172 (200)
Q Consensus       102 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~--~~i~~~~~~i~~~~  172 (200)
                      ..+....        .|++|++|-.+-.  .+....+...+...++.+++.+++.+-  ..|..+++.++-.+
T Consensus       174 ~ELk~ig--------KPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyEF  236 (492)
T PF09547_consen  174 EELKEIG--------KPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYEF  236 (492)
T ss_pred             HHHHHhC--------CCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhcC
Confidence            4455444        7999999988732  333556778888899999999886543  35666666555443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.67  E-value=1.1e-07  Score=74.00  Aligned_cols=95  Identities=18%  Similarity=0.223  Sum_probs=67.3

Q ss_pred             CCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH----
Q psy8700          65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE----  140 (200)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----  140 (200)
                      .+.+..+...+...++++++|+|+.+..     ..|...+.+..      ...|+++|+||+|+..... ......    
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~------~~~piilV~NK~DLl~k~~-~~~~~~~~l~  117 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV------GGNPVLLVGNKIDLLPKSV-NLSKIKEWMK  117 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh------CCCCEEEEEEchhhCCCCC-CHHHHHHHHH
Confidence            3467788888888999999999997654     22333444433      2479999999999965322 222222    


Q ss_pred             HHHHHhCC---cEEEecccCCCcHHHHHHHHHHH
Q psy8700         141 AEAKMWGC---HFMETSAKTNHNVKELFAELLNL  171 (200)
Q Consensus       141 ~~~~~~~~---~~~~vSa~~~~~i~~~~~~i~~~  171 (200)
                      .+.+..++   .++.+||++|.|++++++.+.+.
T Consensus       118 ~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       118 KRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            23445565   48999999999999999999765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.66  E-value=6e-07  Score=65.31  Aligned_cols=86  Identities=17%  Similarity=0.161  Sum_probs=53.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhC--CCC--CCcCCCcccceeEEEEeC-CcEEEEEEEeCCCCCCChh------hHh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKG--TFR--ESYIPTIEDTYRQVISCN-KNICTLQITDTTGSHQFPA------MQR   73 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~--~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~------~~~   73 (200)
                      .+-.-|+++|++++|||+|+|+|.+.  .+.  ....+++.+.+....... +....+.++||+|......      ...
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            34567899999999999999999987  542  222233333333322221 2346899999999654322      222


Q ss_pred             hcccc--CCEEEEEeeCCC
Q psy8700          74 LSISK--GHAFILVYSCTS   90 (200)
Q Consensus        74 ~~~~~--~~~~i~v~d~~~   90 (200)
                      ..+..  ++.+|+..+...
T Consensus        85 ~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          85 FALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHhCEEEEeccCcc
Confidence            23333  688888777654

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01858 NGP_1 NGP-1

Probab=98.66  E-value=1.1e-07  Score=65.39  Aligned_cols=90  Identities=16%  Similarity=0.129  Sum_probs=56.7

Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS  154 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  154 (200)
                      .+..+|.+++|+|+.++..... ..+...+...      ..+.|+++|+||+|+..+.+. ......+...+....+.+|
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~------~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iS   76 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKE------KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHAS   76 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC-HHHHHHHHhc------cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEee
Confidence            5678999999999988643211 2222222221      234799999999999643321 1111122222222357899


Q ss_pred             ccCCCcHHHHHHHHHHHH
Q psy8700         155 AKTNHNVKELFAELLNLE  172 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~  172 (200)
                      |+.+.|++++++.+.+.+
T Consensus        77 a~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          77 INNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             ccccccHHHHHHHHHHHH
Confidence            999999999999998765

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.66  E-value=1.2e-07  Score=65.06  Aligned_cols=57  Identities=23%  Similarity=0.315  Sum_probs=36.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGS   65 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~   65 (200)
                      ....+++++|.+|+|||||+|++.+..... ...+...... .....+   ..+.++||||.
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~-~~~~~~---~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ-QEVKLD---NKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce-EEEEec---CCEEEEECCCC
Confidence            456889999999999999999999855311 1112211111 122222   25899999993

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR00092 GTP-binding protein YchF

Probab=98.65  E-value=5.5e-07  Score=69.49  Aligned_cols=82  Identities=17%  Similarity=0.059  Sum_probs=55.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-CC-CcCCCcccceeEEEEeCC---------------cEEEEEEEeCCCCCC---
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTF-RE-SYIPTIEDTYRQVISCNK---------------NICTLQITDTTGSHQ---   67 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~G~~~---   67 (200)
                      .+++++|.|++|||||+|.|++... .. .|..++.......+.+.+               ....+++.|.||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998765 32 333332233333333332               124789999999543   


Q ss_pred             ----ChhhHhhccccCCEEEEEeeCC
Q psy8700          68 ----FPAMQRLSISKGHAFILVYSCT   89 (200)
Q Consensus        68 ----~~~~~~~~~~~~~~~i~v~d~~   89 (200)
                          ........++++|++++|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                1223444677899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.64  E-value=4.4e-07  Score=62.44  Aligned_cols=64  Identities=14%  Similarity=0.012  Sum_probs=37.8

Q ss_pred             EEEEEEEeCCCCCCChhhHhhc--------cccCCEEEEEeeCCChhH-HHHHHHHHHHHHHHhCCCCCCCCCcEEEEee
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLS--------ISKGHAFILVYSCTSRQS-LEELRPIWEVIRETKGGANELASIPIMLVGN  124 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  124 (200)
                      ..+..++|++|......+....        ....+.+++++|...-.. ..+...+...+..           .=+|++|
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-----------ad~ivln  154 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-----------ADRILLN  154 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-----------CCEEEEe
Confidence            3577899999987655544332        224688999999754332 1111222222222           1288999


Q ss_pred             CCCC
Q psy8700         125 KCDE  128 (200)
Q Consensus       125 K~Dl  128 (200)
                      |+|+
T Consensus       155 k~dl  158 (158)
T cd03112         155 KTDL  158 (158)
T ss_pred             cccC
Confidence            9996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG1491|consensus

Probab=98.62  E-value=1.2e-07  Score=71.06  Aligned_cols=89  Identities=17%  Similarity=0.194  Sum_probs=57.7

Q ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEe---------------CCcEEEEEEEeCCC
Q psy8700           1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISC---------------NKNICTLQITDTTG   64 (200)
Q Consensus         1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~~~~~~D~~G   64 (200)
                      |.+.++.++|+++|.|++|||||+|.|......+...|-+. +.-...+.+               ......++++|++|
T Consensus        14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG   93 (391)
T KOG1491|consen   14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG   93 (391)
T ss_pred             ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence            34567789999999999999999999998765443333221 222222211               11235889999999


Q ss_pred             CC----CChhhHhhcc---ccCCEEEEEeeCC
Q psy8700          65 SH----QFPAMQRLSI---SKGHAFILVYSCT   89 (200)
Q Consensus        65 ~~----~~~~~~~~~~---~~~~~~i~v~d~~   89 (200)
                      .-    .-..+...++   +.+|+++.|+++.
T Consensus        94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence            43    2334444444   4589999888864

>KOG0466|consensus

Probab=98.61  E-value=2.7e-08  Score=73.54  Aligned_cols=165  Identities=13%  Similarity=0.079  Sum_probs=95.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCC------------------------------CC-----CCcCCCcccceeEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT------------------------------FR-----ESYIPTIEDTYRQVI   48 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~------------------------------~~-----~~~~~~~~~~~~~~~   48 (200)
                      ++..++|.-+|...-||||+++++++-.                              ++     ..+.+..++......
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            4567899999999999999999885410                              00     001111111111000


Q ss_pred             -EeCC---cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEee
Q psy8700          49 -SCNK---NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN  124 (200)
Q Consensus        49 -~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  124 (200)
                       ...+   -...+.|+|+||++-.......-..-.|++++++..++...--+...-+..+.-.       .-.+++++-|
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-------~LkhiiilQN  187 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-------KLKHIIILQN  187 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-------hhceEEEEec
Confidence             0011   1146789999997764443333333346667666665422111111112112211       1147899999


Q ss_pred             CCCCCcccccCHH--HHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         125 KCDETENREVSAA--EGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       125 K~Dl~~~~~~~~~--~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      |+|+....+..++  ..+.|.+.   .+.|++++||.-+.||+-+.+.|...+...
T Consensus       188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP  243 (466)
T KOG0466|consen  188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP  243 (466)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence            9999875432222  22333332   356999999999999999999999987543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.59  E-value=3e-06  Score=57.24  Aligned_cols=148  Identities=16%  Similarity=0.247  Sum_probs=81.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCC-CCC--------------CC-
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT-GSH--------------QF-   68 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-G~~--------------~~-   68 (200)
                      ....||.+.|+||+||||++.++...--  ...-...+++...+.-++...=+.+.|+. |..              +| 
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~--~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLR--EKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHH--hcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            3578999999999999999988864211  11123445555666656666667777776 310              11 


Q ss_pred             ------hhh----HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH
Q psy8700          69 ------PAM----QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE  138 (200)
Q Consensus        69 ------~~~----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  138 (200)
                            ...    ....+..+|  ++++|=-.+..+.. ..+...+.....     ...|++.++.+.+- +      ..
T Consensus        81 V~v~~le~i~~~al~rA~~~aD--vIIIDEIGpMElks-~~f~~~ve~vl~-----~~kpliatlHrrsr-~------P~  145 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEAD--VIIIDEIGPMELKS-KKFREAVEEVLK-----SGKPLIATLHRRSR-H------PL  145 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCC--EEEEecccchhhcc-HHHHHHHHHHhc-----CCCcEEEEEecccC-C------hH
Confidence                  111    122333456  44555444433322 444455555553     55788888887652 1      12


Q ss_pred             HHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         139 GEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       139 ~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      .+.+....+..+|    .+..|=+.+++.|.+.+.
T Consensus       146 v~~ik~~~~v~v~----lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         146 VQRIKKLGGVYVF----LTPENRNRILNEILSVLK  176 (179)
T ss_pred             HHHhhhcCCEEEE----EccchhhHHHHHHHHHhc
Confidence            2233233333333    344455588888887664

>KOG1143|consensus

Probab=98.59  E-value=1.4e-07  Score=71.71  Aligned_cols=151  Identities=19%  Similarity=0.246  Sum_probs=88.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCC-----------------------ccccee-EEEE----------eCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-----------------------IEDTYR-QVIS----------CNK   52 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~-~~~~----------~~~   52 (200)
                      +++++++|.-.+|||||+--|..+..+......                       .++..+ ..+.          .+.
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            589999999999999998777654332210000                       000000 0000          011


Q ss_pred             cEEEEEEEeCCCCCCChhhHhhcccc--CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          53 NICTLQITDTTGSHQFPAMQRLSISK--GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      ..-.+.|+|.+|+.+|......-+..  .+..++|++++..-... .+.-+..+..        .+.|++|+++|+|+.+
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A--------L~iPfFvlvtK~Dl~~  317 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA--------LNIPFFVLVTKMDLVD  317 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH--------hCCCeEEEEEeecccc
Confidence            22368899999999887766655544  47788888877654322 2333333333        3389999999999976


Q ss_pred             cccc-----------------------C-HHHHHHHHHH---hCC-cEEEecccCCCcHHHHHH
Q psy8700         131 NREV-----------------------S-AAEGEAEAKM---WGC-HFMETSAKTNHNVKELFA  166 (200)
Q Consensus       131 ~~~~-----------------------~-~~~~~~~~~~---~~~-~~~~vSa~~~~~i~~~~~  166 (200)
                      ....                       . ..++...++.   .++ |+|.+|+-.|.+++-+-.
T Consensus       318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~  381 (591)
T KOG1143|consen  318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT  381 (591)
T ss_pred             chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence            5111                       0 0111111121   233 899999999999765443

>PRK14974 cell division protein FtsY; Provisional

Probab=98.58  E-value=2.5e-07  Score=70.93  Aligned_cols=95  Identities=17%  Similarity=0.103  Sum_probs=54.0

Q ss_pred             EEEEEEeCCCCCCChh-hH---hhc--cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          55 CTLQITDTTGSHQFPA-MQ---RLS--ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                      +.+.++||+|...... +.   ...  ..+.+.+++|+|+......-.   ....+....        .+--+++||.|.
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~---~a~~f~~~~--------~~~giIlTKlD~  291 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE---QAREFNEAV--------GIDGVILTKVDA  291 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH---HHHHHHhcC--------CCCEEEEeeecC
Confidence            4799999999664322 11   111  124688899999876432111   111222212        245789999996


Q ss_pred             CcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700         129 TENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      ...  .-..  .......+.|+.+++  .|++++++..
T Consensus       292 ~~~--~G~~--ls~~~~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        292 DAK--GGAA--LSIAYVIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             CCC--ccHH--HHHHHHHCcCEEEEe--CCCChhhccc
Confidence            332  2222  223334688888887  6888766543

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.57  E-value=1.8e-07  Score=71.62  Aligned_cols=56  Identities=27%  Similarity=0.320  Sum_probs=39.7

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE--EEEeCCcEEEEEEEeCCCCC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNICTLQITDTTGSH   66 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~G~~   66 (200)
                      ...+++++|.||+|||||||+|.+...  ......++++..  .+..+..   +.++||||.-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~--~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKV--AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccc--eeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence            458899999999999999999998775  223333344432  3333333   8999999954

>cd01856 YlqF YlqF

Probab=98.57  E-value=4.1e-07  Score=63.48  Aligned_cols=92  Identities=17%  Similarity=0.097  Sum_probs=61.3

Q ss_pred             hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC
Q psy8700          69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC  148 (200)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  148 (200)
                      .......++++|.+++|+|+.++...... .    +....      ...|+++|+||+|+.+....  .....+.+..+.
T Consensus        10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~------~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~   76 (171)
T cd01856          10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKIL------GNKPRIIVLNKADLADPKKT--KKWLKYFESKGE   76 (171)
T ss_pred             HHHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHh------cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCC
Confidence            34556678899999999999876542221 1    11111      23689999999998643211  111122223345


Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         149 HFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       149 ~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      .++.+||+++.|++++.+.+...+.
T Consensus        77 ~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          77 KVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             eEEEEECCCcccHHHHHHHHHHHHH
Confidence            7899999999999999999988763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.56  E-value=2.9e-07  Score=63.17  Aligned_cols=85  Identities=13%  Similarity=0.036  Sum_probs=55.4

Q ss_pred             CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC
Q psy8700          80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH  159 (200)
Q Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  159 (200)
                      |.+++|+|+.++.+...  .++.. ....     ..+.|+++|+||+|+....+.. .....+....+..++.+||+++.
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~-----~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~   71 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIK-----EKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQ   71 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHh-----cCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCc
Confidence            68899999988765443  22221 1111     2458999999999996532211 11112222334578999999999


Q ss_pred             cHHHHHHHHHHHHh
Q psy8700         160 NVKELFAELLNLEK  173 (200)
Q Consensus       160 ~i~~~~~~i~~~~~  173 (200)
                      |+.++++.+.+...
T Consensus        72 gi~~L~~~i~~~~~   85 (155)
T cd01849          72 GIEKKESAFTKQTN   85 (155)
T ss_pred             ChhhHHHHHHHHhH
Confidence            99999999987654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.53  E-value=6.1e-06  Score=62.99  Aligned_cols=100  Identities=16%  Similarity=0.125  Sum_probs=58.1

Q ss_pred             EEEEEEeCCCCCCChhhHhhcccc--------CCEEEEEeeCCChhHHHH-HHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700          55 CTLQITDTTGSHQFPAMQRLSISK--------GHAFILVYSCTSRQSLEE-LRPIWEVIRETKGGANELASIPIMLVGNK  125 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~~~~~--------~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  125 (200)
                      ....++++.|......+...+...        .|+++-|+|+..-..... .....   .....       ..=+|++||
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~---~~Qia-------~AD~ivlNK  154 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELA---EDQLA-------FADVIVLNK  154 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHH---HHHHH-------hCcEEEEec
Confidence            567789999988876666665552        477888988765433222 22222   22221       122999999


Q ss_pred             CCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700         126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus       126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      .|+.+..+....+.........++++.+|. .+....+++
T Consensus       155 ~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         155 TDLVDAEELEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             ccCCCHHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            999887653222222223334568888876 333343333

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.52  E-value=2.1e-06  Score=67.72  Aligned_cols=134  Identities=14%  Similarity=0.135  Sum_probs=69.4

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh----CCC------CCCcCCCccc-------ceeEE-EEe----C------------
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK----GTF------RESYIPTIED-------TYRQV-ISC----N------------   51 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~----~~~------~~~~~~~~~~-------~~~~~-~~~----~------------   51 (200)
                      ++.-|+++|++||||||++.+|..    ...      ...+.+....       ..... +..    +            
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            356799999999999999988852    111      1111111000       00000 100    0            


Q ss_pred             -CcEEEEEEEeCCCCCCChhhHhh------ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEee
Q psy8700          52 -KNICTLQITDTTGSHQFPAMQRL------SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN  124 (200)
Q Consensus        52 -~~~~~~~~~D~~G~~~~~~~~~~------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  124 (200)
                       ...+.+.|+||+|..........      .....+.+++|+|+.-+..-.   .....+.+..        .+.-+|+|
T Consensus       179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~~--------~~~g~IlT  247 (429)
T TIGR01425       179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDSV--------DVGSVIIT  247 (429)
T ss_pred             HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhcc--------CCcEEEEE
Confidence             12468999999996543321111      122467899999987543221   1122222222        36689999


Q ss_pred             CCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700         125 KCDETENREVSAAEGEAEAKMWGCHFMETS  154 (200)
Q Consensus       125 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  154 (200)
                      |.|....-  -.  ........+.|+.+++
T Consensus       248 KlD~~arg--G~--aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       248 KLDGHAKG--GG--ALSAVAATKSPIIFIG  273 (429)
T ss_pred             CccCCCCc--cH--HhhhHHHHCCCeEEEc
Confidence            99963211  11  1223334566655554

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.47  E-value=2.7e-06  Score=64.95  Aligned_cols=95  Identities=19%  Similarity=0.118  Sum_probs=54.2

Q ss_pred             cEEEEEEEeCCCCCCChhh----Hhhc--------cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEE
Q psy8700          53 NICTLQITDTTGSHQFPAM----QRLS--------ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM  120 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~~----~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  120 (200)
                      ..+.+.++||||.......    ....        -...+..++|+|++...  ..+... .......        .+.-
T Consensus       195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~~--------~~~g  263 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEAV--------GLTG  263 (318)
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhhC--------CCCE
Confidence            3468999999996542211    1111        12467889999998543  222221 1122111        3557


Q ss_pred             EEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700         121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus       121 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      +|+||.|....  .-.  ........+.|+..++  .|++++++
T Consensus       264 iIlTKlD~t~~--~G~--~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        264 IILTKLDGTAK--GGV--VFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             EEEECCCCCCC--ccH--HHHHHHHHCCCEEEEe--CCCChhhC
Confidence            99999995322  222  2333455688999988  67777554

>PRK12288 GTPase RsgA; Reviewed

Probab=98.45  E-value=4.5e-07  Score=69.98  Aligned_cols=55  Identities=20%  Similarity=0.266  Sum_probs=33.8

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCC-CCCcCCCc---c--cc-eeEEEEeCCcEEEEEEEeCCCCCC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKGTF-RESYIPTI---E--DT-YRQVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~~~-~~~~~~~~---~--~~-~~~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      ++|+|.+|||||||+|+|++... .....+..   +  .+ ....+.+.+.   ..++||||...
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~  269 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVRE  269 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCc
Confidence            78999999999999999997542 11122211   1  11 1222333322   25999999665

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.45  E-value=3.3e-07  Score=62.64  Aligned_cols=24  Identities=38%  Similarity=0.576  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      -.++++|++|||||||+|+|.+..
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999999863

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.44  E-value=9.2e-07  Score=59.68  Aligned_cols=79  Identities=11%  Similarity=0.046  Sum_probs=51.2

Q ss_pred             hhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEE
Q psy8700          73 RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFME  152 (200)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (200)
                      ...+..+|++++|+|+.++.+... ..+...+....      .+.|+++|+||+|+.+...  ...........+..++.
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~------~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~   76 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD------PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVF   76 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc------CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEE
Confidence            446778999999999988765432 12222222221      3479999999999864332  12223334455678999


Q ss_pred             ecccCCCc
Q psy8700         153 TSAKTNHN  160 (200)
Q Consensus       153 vSa~~~~~  160 (200)
                      +||+++.+
T Consensus        77 iSa~~~~~   84 (141)
T cd01857          77 FSALKENA   84 (141)
T ss_pred             EEecCCCc
Confidence            99998864

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.44  E-value=1.1e-06  Score=68.37  Aligned_cols=84  Identities=18%  Similarity=0.116  Sum_probs=59.2

Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-HhCCcEEEe
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-MWGCHFMET  153 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~v  153 (200)
                      ...++|.+++|+++..+-....+..++..+....        .|.+||+||+||.+..+   .....+.. ..+++++.+
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~--------i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~v  177 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWESG--------AEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAV  177 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHcC--------CCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEE
Confidence            3678999999999975445556666665555433        67799999999975421   11111111 346799999


Q ss_pred             cccCCCcHHHHHHHHH
Q psy8700         154 SAKTNHNVKELFAELL  169 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~  169 (200)
                      |++++.|++++.+++.
T Consensus       178 Sa~~g~gl~~L~~~L~  193 (356)
T PRK01889        178 SALDGEGLDVLAAWLS  193 (356)
T ss_pred             ECCCCccHHHHHHHhh
Confidence            9999999999988874

>PRK12289 GTPase RsgA; Reviewed

Probab=98.43  E-value=5.6e-07  Score=69.53  Aligned_cols=23  Identities=48%  Similarity=0.681  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      .++|+|++|+|||||+|+|++..
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCcc
Confidence            37999999999999999998754

>KOG0447|consensus

Probab=98.42  E-value=1.7e-05  Score=63.47  Aligned_cols=73  Identities=18%  Similarity=0.180  Sum_probs=50.2

Q ss_pred             EEEEEeCCCCC-------------CChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700          56 TLQITDTTGSH-------------QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV  122 (200)
Q Consensus        56 ~~~~~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  122 (200)
                      ...++|.||..             ...++..+++++.+++|+|+--.   +++.-+.....+....    ++.....|+|
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~----DP~GrRTIfV  485 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQM----DPHGRRTIFV  485 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhc----CCCCCeeEEE
Confidence            67799999932             23467788999999999998532   2333344444455555    3566788999


Q ss_pred             eeCCCCCcccccC
Q psy8700         123 GNKCDETENREVS  135 (200)
Q Consensus       123 ~nK~Dl~~~~~~~  135 (200)
                      +||.|+.+.+-..
T Consensus       486 LTKVDlAEknlA~  498 (980)
T KOG0447|consen  486 LTKVDLAEKNVAS  498 (980)
T ss_pred             EeecchhhhccCC
Confidence            9999997764333

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.40  E-value=2.2e-07  Score=65.22  Aligned_cols=69  Identities=17%  Similarity=0.078  Sum_probs=40.2

Q ss_pred             EEEEEEEeCCCCCCChhhH--hh---ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          54 ICTLQITDTTGSHQFPAMQ--RL---SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~--~~---~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                      .....++++.|......+.  ..   ..-..+.++.|+|...-.........+.......          =+|++||+|+
T Consensus        84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A----------DvIvlnK~D~  153 (178)
T PF02492_consen   84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA----------DVIVLNKIDL  153 (178)
T ss_dssp             C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-----------SEEEEE-GGG
T ss_pred             CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc----------CEEEEecccc
Confidence            4577888999966655551  00   1124588999999976433333333332222222          2999999999


Q ss_pred             Cccc
Q psy8700         129 TENR  132 (200)
Q Consensus       129 ~~~~  132 (200)
                      .+..
T Consensus       154 ~~~~  157 (178)
T PF02492_consen  154 VSDE  157 (178)
T ss_dssp             HHHH
T ss_pred             CChh
Confidence            7765

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.39  E-value=2.3e-06  Score=64.34  Aligned_cols=93  Identities=18%  Similarity=0.114  Sum_probs=62.6

Q ss_pred             hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC
Q psy8700          69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC  148 (200)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  148 (200)
                      .......++.+|++++|+|+.++.+.... .    +.+..      .+.|+++|+||+|+.+....  ..........+.
T Consensus        12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~----i~~~l------~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~   78 (276)
T TIGR03596        12 RREIKEKLKLVDVVIEVLDARIPLSSRNP-M----IDEIR------GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGI   78 (276)
T ss_pred             HHHHHHHHhhCCEEEEEEeCCCCCCCCCh-h----HHHHH------CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCC
Confidence            34556688899999999999876543321 1    11111      23699999999998543211  111112222456


Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         149 HFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       149 ~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      +++.+||+++.|+.++.+.+.+.+.+
T Consensus        79 ~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        79 KALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             eEEEEECCCcccHHHHHHHHHHHHHH
Confidence            78999999999999999999887754

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.39  E-value=1.7e-06  Score=64.74  Aligned_cols=94  Identities=18%  Similarity=0.074  Sum_probs=54.1

Q ss_pred             EEEEEEEeCCCCCCChhhHhh-------cc-----ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEE
Q psy8700          54 ICTLQITDTTGSHQFPAMQRL-------SI-----SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML  121 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~-------~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  121 (200)
                      .+.+.++||||..........       ..     ...+.+++|+|++...  +.+.. ...+.+..        .+.-+
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~~--------~~~g~  222 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEAV--------GLTGI  222 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhhC--------CCCEE
Confidence            368999999996643322111       11     1378999999997542  22221 12222222        24589


Q ss_pred             EeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700         122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus       122 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+||.|....-  -.  ........+.|+.+++  .|++++++
T Consensus       223 IlTKlDe~~~~--G~--~l~~~~~~~~Pi~~~~--~Gq~~~dl  259 (272)
T TIGR00064       223 ILTKLDGTAKG--GI--ILSIAYELKLPIKFIG--VGEKIDDL  259 (272)
T ss_pred             EEEccCCCCCc--cH--HHHHHHHHCcCEEEEe--CCCChHhC
Confidence            99999963321  11  2233335578888888  67776554

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.39  E-value=3.1e-06  Score=57.52  Aligned_cols=58  Identities=22%  Similarity=0.192  Sum_probs=37.2

Q ss_pred             EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      .+.+.++||+|...   ....++..+|.++++....-   .+.+....-.+.+..+          ++++||+|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~---~D~y~~~k~~~~~~~~----------~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGA---GDDIQAIKAGIMEIAD----------IVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCc---hhHHHHhhhhHhhhcC----------EEEEeCCC
Confidence            46889999999553   22348888998888886652   2332222223343332          89999998

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG0463|consensus

Probab=98.35  E-value=2.8e-06  Score=64.92  Aligned_cols=152  Identities=15%  Similarity=0.189  Sum_probs=81.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCC------------------CcCCCcc-------------------c-ceeEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRE------------------SYIPTIE-------------------D-TYRQVI   48 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~-------------------~-~~~~~~   48 (200)
                      +++++++|...+|||||+--|..+..+.                  ...++.+                   . ...+.-
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            5899999999999999976664322211                  0000000                   0 111111


Q ss_pred             EeCCcEEEEEEEeCCCCCCChhhHhhccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700          49 SCNKNICTLQITDTTGSHQFPAMQRLSIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC  126 (200)
Q Consensus        49 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  126 (200)
                      ..++..-.+.|+|.+|+++|......-+.  -.|..++.+-.+.. .+.....-+.....        ...|+++|++|+
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa--------L~VPVfvVVTKI  283 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA--------LHVPVFVVVTKI  283 (641)
T ss_pred             eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh--------hcCcEEEEEEee
Confidence            12233346789999999987664433222  23555555544432 12222222222222        338999999999


Q ss_pred             CCCcccccCHHH--HHHHH--------------------------HHhCCcEEEecccCCCcHHHHHHH
Q psy8700         127 DETENREVSAAE--GEAEA--------------------------KMWGCHFMETSAKTNHNVKELFAE  167 (200)
Q Consensus       127 Dl~~~~~~~~~~--~~~~~--------------------------~~~~~~~~~vSa~~~~~i~~~~~~  167 (200)
                      |....+...+..  ...+.                          .+.-||+|.+|..+|.|+.-+...
T Consensus       284 DMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF  352 (641)
T KOG0463|consen  284 DMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF  352 (641)
T ss_pred             ccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence            985443222211  11111                          222256888999999998655443

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.34  E-value=1.4e-06  Score=64.31  Aligned_cols=24  Identities=38%  Similarity=0.409  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      -.++++|.+|+|||||+|+|.+..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhh
Confidence            367999999999999999998753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.34  E-value=1.7e-05  Score=61.73  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-.++|+|++|+||||++.+|..
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999999865

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.31  E-value=1.3e-05  Score=61.39  Aligned_cols=86  Identities=7%  Similarity=-0.060  Sum_probs=48.4

Q ss_pred             EEEEEEeCCCCCCChhhHhhccc--------cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700          55 CTLQITDTTGSHQFPAMQRLSIS--------KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC  126 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  126 (200)
                      ....++++.|......+...++.        ..++++.|+|+.+-.....  .......+..        ..=+|++||+
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~--~~~~~~~Qi~--------~AD~IvlnK~  160 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN--QFTIAQSQVG--------YADRILLTKT  160 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcc--ccHHHHHHHH--------hCCEEEEecc
Confidence            46788999998877666665532        2488999999875332111  1111112222        1228999999


Q ss_pred             CCCcccccCHHHHHHHHHHh--CCcEEEec
Q psy8700         127 DETENREVSAAEGEAEAKMW--GCHFMETS  154 (200)
Q Consensus       127 Dl~~~~~~~~~~~~~~~~~~--~~~~~~vS  154 (200)
                      |+....    .......+..  .++++.++
T Consensus       161 Dl~~~~----~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        161 DVAGEA----EKLRERLARINARAPVYTVV  186 (318)
T ss_pred             ccCCHH----HHHHHHHHHhCCCCEEEEec
Confidence            987632    1222333333  34676654

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.30  E-value=1.8e-06  Score=67.29  Aligned_cols=58  Identities=26%  Similarity=0.279  Sum_probs=36.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCC---CcCCCcccceeEEE--EeCCcEEEEEEEeCCCCCCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRE---SYIPTIEDTYRQVI--SCNKNICTLQITDTTGSHQF   68 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~G~~~~   68 (200)
                      .+++++|.+|+|||||+|+|+......   ...+..++++....  ..++   .+.++||||....
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~~  217 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIINS  217 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCCh
Confidence            589999999999999999998743211   12222333333222  2222   2579999996543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0460|consensus

Probab=98.26  E-value=7.9e-06  Score=61.64  Aligned_cols=162  Identities=15%  Similarity=0.133  Sum_probs=99.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh---C-------CCCCC--cCCCc-ccce--eEEEEeCCcEEEEEEEeCCCCCCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK---G-------TFRES--YIPTI-EDTY--RQVISCNKNICTLQITDTTGSHQF   68 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~---~-------~~~~~--~~~~~-~~~~--~~~~~~~~~~~~~~~~D~~G~~~~   68 (200)
                      +-+.++|.-+|...-|||||..++..   .       +|.+-  ....- -+.+  ...+..+.......-.|+||+.+|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            34568899999999999999877642   1       11110  00000 0111  123333444567788999999988


Q ss_pred             hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC---HHHHHHHHHH
Q psy8700          69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS---AAEGEAEAKM  145 (200)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~  145 (200)
                      -.....-....|+.|+|+.++|...-+.-+.++  +.+..+      -..++|.+||.|+.+..+.-   +.+..++...
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHlL--LArQVG------V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse  202 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPMPQTREHLL--LARQVG------VKHIVVFINKVDLVDDPEMLELVEMEIRELLSE  202 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCCcchHHHHH--HHHHcC------CceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence            777666777789999999999976555544333  333332      25688999999998543322   2233444455


Q ss_pred             hC-----CcEEEec---ccCCCc-------HHHHHHHHHHHHh
Q psy8700         146 WG-----CHFMETS---AKTNHN-------VKELFAELLNLEK  173 (200)
Q Consensus       146 ~~-----~~~~~vS---a~~~~~-------i~~~~~~i~~~~~  173 (200)
                      +|     +|++.-|   |+.|.+       |.++++.+-+++.
T Consensus       203 ~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip  245 (449)
T KOG0460|consen  203 FGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIP  245 (449)
T ss_pred             cCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCC
Confidence            54     4788766   455532       5666666555553

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.26  E-value=7.6e-06  Score=61.17  Aligned_cols=97  Identities=21%  Similarity=0.159  Sum_probs=69.0

Q ss_pred             CCChhhHhhccccCCEEEEEeeCCChhH-HHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH
Q psy8700          66 HQFPAMQRLSISKGHAFILVYSCTSRQS-LEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK  144 (200)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  144 (200)
                      ++.+.+.+..+.+.|-+++|+++.+|+- ...+..++-....        ..+..+|++||+|+.+..+...........
T Consensus        67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--------~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~  138 (301)
T COG1162          67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--------GGIEPVIVLNKIDLLDDEEAAVKELLREYE  138 (301)
T ss_pred             cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH--------cCCcEEEEEEccccCcchHHHHHHHHHHHH
Confidence            3445566666777888888889888874 4444444433333        236778889999998766544334455666


Q ss_pred             HhCCcEEEecccCCCcHHHHHHHHHH
Q psy8700         145 MWGCHFMETSAKTNHNVKELFAELLN  170 (200)
Q Consensus       145 ~~~~~~~~vSa~~~~~i~~~~~~i~~  170 (200)
                      ..|++++.+|++++.++.++.+.+..
T Consensus       139 ~~gy~v~~~s~~~~~~~~~l~~~l~~  164 (301)
T COG1162         139 DIGYPVLFVSAKNGDGLEELAELLAG  164 (301)
T ss_pred             hCCeeEEEecCcCcccHHHHHHHhcC
Confidence            78999999999999999999886643

>KOG1424|consensus

Probab=98.25  E-value=1.6e-06  Score=68.45  Aligned_cols=54  Identities=22%  Similarity=0.199  Sum_probs=38.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee--EEEEeCCcEEEEEEEeCCCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGS   65 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~   65 (200)
                      .+.|++||.|||||||+||+|.+.+-  ..++.+++.++  .++.+..   .+.++|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~Kk--VsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKK--VSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCce--eeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            58999999999999999999999774  23333333332  2333333   4889999994

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.25  E-value=6.2e-06  Score=62.34  Aligned_cols=93  Identities=19%  Similarity=0.171  Sum_probs=62.6

Q ss_pred             hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC
Q psy8700          69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC  148 (200)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  148 (200)
                      .......+..+|++++|+|+.++.+...  ..   +....      .+.|+++|+||+|+.+...  ......+....+.
T Consensus        15 ~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~---l~~~~------~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~   81 (287)
T PRK09563         15 RREIKENLKLVDVVIEVLDARIPLSSEN--PM---IDKII------GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGI   81 (287)
T ss_pred             HHHHHHHhhhCCEEEEEEECCCCCCCCC--hh---HHHHh------CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCC
Confidence            3455667889999999999987654332  11   11111      2379999999999854321  1111222223356


Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         149 HFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       149 ~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      +++.+|++.+.|+.++.+.+.+.+.+
T Consensus        82 ~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         82 KALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             eEEEEECCCcccHHHHHHHHHHHHHH
Confidence            78999999999999999999887754

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.24  E-value=1.9e-05  Score=56.21  Aligned_cols=90  Identities=22%  Similarity=0.070  Sum_probs=50.4

Q ss_pred             EEEEEEeCCCCCCChhhHhh----ccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          55 CTLQITDTTGSHQFPAMQRL----SIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~----~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                      +.+.++||+|...+......    ++.  ..+-+++|++++....  .+.... ......        .+-=+++||.|.
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~~-~~~~~~--------~~~~lIlTKlDe  152 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQAL-AFYEAF--------GIDGLILTKLDE  152 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHHH-HHHHHS--------STCEEEEESTTS
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHHH-HHhhcc--------cCceEEEEeecC
Confidence            57999999997654422111    111  4678899999886542  322222 222222        133677999995


Q ss_pred             CcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700         129 TENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      ...-    -.........+.|+-.++  +|.++
T Consensus       153 t~~~----G~~l~~~~~~~~Pi~~it--~Gq~V  179 (196)
T PF00448_consen  153 TARL----GALLSLAYESGLPISYIT--TGQRV  179 (196)
T ss_dssp             SSTT----HHHHHHHHHHTSEEEEEE--SSSST
T ss_pred             CCCc----ccceeHHHHhCCCeEEEE--CCCCh
Confidence            3321    123445556777777776  45544

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK13796 GTPase YqeH; Provisional

Probab=98.23  E-value=2.7e-06  Score=66.42  Aligned_cols=58  Identities=28%  Similarity=0.284  Sum_probs=36.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCC---CcCCCcccceeEEE--EeCCcEEEEEEEeCCCCCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRE---SYIPTIEDTYRQVI--SCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~G~~~   67 (200)
                      ..+++++|.+|||||||+|+|.......   ...+..++++....  .+++.   ..++||||...
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~~  222 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGIIH  222 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCccc
Confidence            3579999999999999999998643211   11223333443322  23333   47999999753

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.23  E-value=3e-05  Score=62.55  Aligned_cols=138  Identities=14%  Similarity=0.112  Sum_probs=69.8

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCC------------CCcCCCc-------ccceeEEEEe-C-----------CcEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFR------------ESYIPTI-------EDTYRQVISC-N-----------KNIC   55 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~------------~~~~~~~-------~~~~~~~~~~-~-----------~~~~   55 (200)
                      .-.|+|+|+.|+||||++..|...-..            ..+....       .......+.. .           -..+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            357899999999999999888642100            0111000       0000000110 0           1236


Q ss_pred             EEEEEeCCCCCCChhhHhh---ccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          56 TLQITDTTGSHQFPAMQRL---SIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        56 ~~~~~D~~G~~~~~~~~~~---~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      .+.|+||+|..........   .+.  .....++|++.+..  ...+......+..         ..+.-+|+||.|...
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~---------~~~~gvILTKlDEt~  498 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH---------AKPQGVVLTKLDETG  498 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh---------hCCeEEEEecCcCcc
Confidence            8999999996543221110   011  12345666666532  3333333322222         136679999999632


Q ss_pred             ccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700         131 NREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                        ..  -.........+.++.+++  +|..+
T Consensus       499 --~l--G~aLsv~~~~~LPI~yvt--~GQ~V  523 (559)
T PRK12727        499 --RF--GSALSVVVDHQMPITWVT--DGQRV  523 (559)
T ss_pred             --ch--hHHHHHHHHhCCCEEEEe--CCCCc
Confidence              11  123344446677777776  45555

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.21  E-value=3.3e-06  Score=63.03  Aligned_cols=56  Identities=25%  Similarity=0.236  Sum_probs=33.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC------CCCcCCCc-ccceeEEEEeCCcEEEEEEEeCCCCCC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTF------RESYIPTI-EDTYRQVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      ..+++|.+|+|||||+|+|....-      +......- ..+....+.+.+.   -.++||||..+
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~  228 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRS  228 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCc
Confidence            568999999999999999986321      11111111 1222233344322   36899999665

>PRK13796 GTPase YqeH; Provisional

Probab=98.21  E-value=9.9e-06  Score=63.26  Aligned_cols=93  Identities=19%  Similarity=0.185  Sum_probs=59.1

Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHH----HHHH
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG----EAEA  143 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~  143 (200)
                      +.......-...+.+++|+|+.|..     ..|...+.+..      .+.|+++|+||+|+..... .....    ..+.
T Consensus        59 ~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~------~~kpviLViNK~DLl~~~~-~~~~i~~~l~~~~  126 (365)
T PRK13796         59 FLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV------GNNPVLLVGNKADLLPKSV-KKNKVKNWLRQEA  126 (365)
T ss_pred             HHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh------CCCCEEEEEEchhhCCCcc-CHHHHHHHHHHHH
Confidence            3444333333344889999988743     22333344433      2478999999999965321 11121    2223


Q ss_pred             HHhCC---cEEEecccCCCcHHHHHHHHHHHH
Q psy8700         144 KMWGC---HFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       144 ~~~~~---~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      +..++   .++.+||+++.|++++++.|.+..
T Consensus       127 k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        127 KELGLRPVDVVLISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             HhcCCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            44555   589999999999999999997753

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.20  E-value=2.1e-06  Score=64.82  Aligned_cols=24  Identities=33%  Similarity=0.526  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      -.++++|++|+|||||+|.|.+..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~  185 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDL  185 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchh
Confidence            468999999999999999998754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.20  E-value=2.1e-05  Score=61.04  Aligned_cols=140  Identities=21%  Similarity=0.224  Sum_probs=70.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCc----ccceeE---------------EEEe------------CCcEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI----EDTYRQ---------------VISC------------NKNIC   55 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~----~~~~~~---------------~~~~------------~~~~~   55 (200)
                      .--|+++||.||||||-+.+|.............    .++|+.               .+.+            .-..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            5678999999999999988875422200000000    011111               0000            01345


Q ss_pred             EEEEEeCCCCCCChh----hHhhcccc--CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          56 TLQITDTTGSHQFPA----MQRLSISK--GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        56 ~~~~~D~~G~~~~~~----~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      .+.++||.|...+..    ....++..  ..-+.+|++++...  .++...   +.....    .  ..-=+++||.|..
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei---~~~f~~----~--~i~~~I~TKlDET  351 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEI---IKQFSL----F--PIDGLIFTKLDET  351 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHH---HHHhcc----C--CcceeEEEccccc
Confidence            899999999765543    22233332  24455677776542  233332   222221    1  1224789999943


Q ss_pred             cccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700         130 ENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      .  ..-  .........+.|+-.++  +|.+|.+
T Consensus       352 ~--s~G--~~~s~~~e~~~PV~YvT--~GQ~VPe  379 (407)
T COG1419         352 T--SLG--NLFSLMYETRLPVSYVT--NGQRVPE  379 (407)
T ss_pred             C--chh--HHHHHHHHhCCCeEEEe--CCCCCCc
Confidence            2  211  22333445566666665  4555443

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=98.19  E-value=7e-05  Score=57.96  Aligned_cols=36  Identities=8%  Similarity=-0.021  Sum_probs=26.6

Q ss_pred             EEEEEEeCCCCCCChhhHhhcc-------ccCCEEEEEeeCCC
Q psy8700          55 CTLQITDTTGSHQFPAMQRLSI-------SKGHAFILVYSCTS   90 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~~~-------~~~~~~i~v~d~~~   90 (200)
                      ....++++.|......+...+.       -..++++.|+|+.+
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~  135 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA  135 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence            4678899999887766666542       13588999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=1.6e-05  Score=69.49  Aligned_cols=153  Identities=22%  Similarity=0.182  Sum_probs=80.0

Q ss_pred             EEEECCCCCCHHHHHHHHhhCC-CC----CCcCCCcccceeEEEEeCCcEEEEEEEeCCC----CC----CChhhHhhc-
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKGT-FR----ESYIPTIEDTYRQVISCNKNICTLQITDTTG----SH----QFPAMQRLS-   75 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----~~----~~~~~~~~~-   75 (200)
                      .+|+|++|+||||++..--... +.    ....... ++......+.+   .-.++||.|    ++    .....+..+ 
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~-gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL  203 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGP-GTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL  203 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCC-CCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence            4799999999999876432111 00    0111111 11111222222   478899999    21    223333332 


Q ss_pred             --------cccCCEEEEEeeCCC-----hh----HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc-ccCH-
Q psy8700          76 --------ISKGHAFILVYSCTS-----RQ----SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR-EVSA-  136 (200)
Q Consensus        76 --------~~~~~~~i~v~d~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~-  136 (200)
                              .+..+++|+.+|+.+     +.    ....++..+.++.+..     .-..|+.|++||.|+..-- +.-. 
T Consensus       204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-----~~~~PVYl~lTk~Dll~GF~efF~~  278 (1188)
T COG3523         204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-----HARLPVYLVLTKADLLPGFEEFFGS  278 (1188)
T ss_pred             HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-----ccCCceEEEEecccccccHHHHHhc
Confidence                    334799999999753     11    1333444455555555     3668999999999987522 1111 


Q ss_pred             HHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         137 AEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       137 ~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      .......+.+|. .|..++....+....++.-.+.+
T Consensus       279 l~~~~r~qvwG~-tf~~~~~~~~~~~~~~~~e~~~L  313 (1188)
T COG3523         279 LNKEEREQVWGV-TFPLDARRNANLAAELEQEFRLL  313 (1188)
T ss_pred             cCHHHHhhhcee-ccccccccccchHHHHHHHHHHH
Confidence            111223334443 45556655545444444433333

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=98.16  E-value=8.7e-05  Score=52.08  Aligned_cols=86  Identities=26%  Similarity=0.220  Sum_probs=57.1

Q ss_pred             cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700          53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR  132 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  132 (200)
                      ..+.+.++|||+...  ......+..+|.+++++..+. .+......++..+...        ..|+.+|+|+.|.... 
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~--------~~~~~vV~N~~~~~~~-  158 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF--------GIPVGVVINKYDLNDE-  158 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc--------CCCEEEEEeCCCCCcc-
Confidence            457899999997543  233456678999999988763 3566666666655542        2578899999996432 


Q ss_pred             ccCHHHHHHHHHHhCCcEEE
Q psy8700         133 EVSAAEGEAEAKMWGCHFME  152 (200)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~  152 (200)
                        ...+..++....+++++.
T Consensus       159 --~~~~~~~~~~~~~~~vl~  176 (179)
T cd03110         159 --IAEEIEDYCEEEGIPILG  176 (179)
T ss_pred             --hHHHHHHHHHHcCCCeEE
Confidence              223445556666776653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.14  E-value=3.5e-05  Score=60.86  Aligned_cols=137  Identities=15%  Similarity=0.102  Sum_probs=71.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC-----C-------CCcCCCc-------ccceeEEEE------------eCCcEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTF-----R-------ESYIPTI-------EDTYRQVIS------------CNKNIC   55 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~-----~-------~~~~~~~-------~~~~~~~~~------------~~~~~~   55 (200)
                      .-.|+++|+.|+||||++..|.+...     .       ..+....       .......+.            ..-...
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            45899999999999999998865210     0       0000000       000000000            001223


Q ss_pred             EEEEEeCCCCCCChh----hHhhcc--ccCCEEEEEeeCCC-hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          56 TLQITDTTGSHQFPA----MQRLSI--SKGHAFILVYSCTS-RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        56 ~~~~~D~~G~~~~~~----~~~~~~--~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                      .+.++||+|......    ....+.  ....-.++|++++. .+.+.++   ...+.         .-.+-=+++||.|.
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~---~~~f~---------~~~~~~~I~TKlDE  338 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV---ISAYQ---------GHGIHGCIITKVDE  338 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH---HHHhc---------CCCCCEEEEEeeeC
Confidence            788999999665322    111121  12346778888874 3333332   21111         11244688999995


Q ss_pred             CcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700         129 TENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      ...  .-  .........+.|+.+++  +|.++
T Consensus       339 t~~--~G--~~l~~~~~~~lPi~yvt--~Gq~V  365 (420)
T PRK14721        339 AAS--LG--IALDAVIRRKLVLHYVT--NGQKV  365 (420)
T ss_pred             CCC--cc--HHHHHHHHhCCCEEEEE--CCCCc
Confidence            332  11  23444556677877776  45555

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.13  E-value=6.9e-06  Score=63.87  Aligned_cols=143  Identities=13%  Similarity=0.096  Sum_probs=73.3

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhC----CCC------CCcCCCccccee-------EEEE-e-------------C-Cc
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKG----TFR------ESYIPTIEDTYR-------QVIS-C-------------N-KN   53 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~----~~~------~~~~~~~~~~~~-------~~~~-~-------------~-~~   53 (200)
                      ....|+++|++||||||++..|...    ...      ..+....-....       ..+. .             . ..
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence            3468999999999999999998531    100      011000000000       0000 0             0 01


Q ss_pred             EEEEEEEeCCCCCCChhh----Hhhcc--ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          54 ICTLQITDTTGSHQFPAM----QRLSI--SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      .+.+.|+||+|.......    ....+  ...+.+++|+|++-..  +.+......+..         -..-=+++||.|
T Consensus       320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~---------~~idglI~TKLD  388 (436)
T PRK11889        320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---------IHIDGIVFTKFD  388 (436)
T ss_pred             CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC---------CCCCEEEEEccc
Confidence            358999999996543221    11222  1346778888875331  222222222221         123468899999


Q ss_pred             CCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700         128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus       128 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      ...  ..-.  ........+.|+..++  .|.++.+=+
T Consensus       389 ET~--k~G~--iLni~~~~~lPIsyit--~GQ~VPeDI  420 (436)
T PRK11889        389 ETA--SSGE--LLKIPAVSSAPIVLMT--DGQDVKKNI  420 (436)
T ss_pred             CCC--CccH--HHHHHHHHCcCEEEEe--CCCCCCcch
Confidence            643  2222  2344556777777776  455554433

>PRK00098 GTPase RsgA; Reviewed

Probab=98.12  E-value=7.7e-06  Score=62.16  Aligned_cols=24  Identities=33%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      -.++++|++|+|||||+|+|.+..
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc
Confidence            368999999999999999998754

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.11  E-value=1.6e-05  Score=63.15  Aligned_cols=135  Identities=16%  Similarity=0.137  Sum_probs=69.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh----CCCC------CCcCCCc-----------ccceeEE-EEeC-----------
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK----GTFR------ESYIPTI-----------EDTYRQV-ISCN-----------   51 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~----~~~~------~~~~~~~-----------~~~~~~~-~~~~-----------   51 (200)
                      ..+..|+++|++|+||||++..|..    ....      ..+.+..           +..+... ...+           
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~  172 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK  172 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            3467899999999999999887742    1110      1111110           0000000 0000           


Q ss_pred             CcEEEEEEEeCCCCCCChhhH------hhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700          52 KNICTLQITDTTGSHQFPAMQ------RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK  125 (200)
Q Consensus        52 ~~~~~~~~~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  125 (200)
                      -....+.++||+|......-.      ......++.+++|+|++...  +.+    ........     .-...-+|+||
T Consensus       173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av----~~a~~F~~-----~l~i~gvIlTK  241 (437)
T PRK00771        173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAK----NQAKAFHE-----AVGIGGIIITK  241 (437)
T ss_pred             hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHH----HHHHHHHh-----cCCCCEEEEec
Confidence            012378999999966532211      11233578899999987642  111    11222221     00134688999


Q ss_pred             CCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700         126 CDETENREVSAAEGEAEAKMWGCHFMETS  154 (200)
Q Consensus       126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  154 (200)
                      .|...  ..-  .........+.|+.+++
T Consensus       242 lD~~a--~~G--~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        242 LDGTA--KGG--GALSAVAETGAPIKFIG  266 (437)
T ss_pred             ccCCC--ccc--HHHHHHHHHCcCEEEEe
Confidence            99532  111  12334445677766665

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.06  E-value=9.8e-05  Score=62.24  Aligned_cols=140  Identities=16%  Similarity=0.118  Sum_probs=70.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-C-----------CCcCCCccc-------ceeEEEE-e-----------CCcEEE
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTF-R-----------ESYIPTIED-------TYRQVIS-C-----------NKNICT   56 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~-~-----------~~~~~~~~~-------~~~~~~~-~-----------~~~~~~   56 (200)
                      --|+|+|+.|+||||++..|...-. .           ..+.....+       .....+. .           .-....
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            4689999999999999999874220 0           001100000       0000000 0           012347


Q ss_pred             EEEEeCCCCCCChhhH----hhc--cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          57 LQITDTTGSHQFPAMQ----RLS--ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        57 ~~~~D~~G~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      +.|+||+|........    ...  ....+-.++|+|.+..  .+.+......+....      ...+-=+|+||.|...
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~------~~~i~glIlTKLDEt~  337 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGA------GEDVDGCIITKLDEAT  337 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcc------cCCCCEEEEeccCCCC
Confidence            8999999954322111    111  2234667888888743  222222222222211      0013468899999543


Q ss_pred             ccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700         131 NREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      .  .-.  ........+.|+.+++  +|.+|
T Consensus       338 ~--~G~--iL~i~~~~~lPI~yit--~GQ~V  362 (767)
T PRK14723        338 H--LGP--ALDTVIRHRLPVHYVS--TGQKV  362 (767)
T ss_pred             C--ccH--HHHHHHHHCCCeEEEe--cCCCC
Confidence            2  121  2334456678877776  45555

>PRK13695 putative NTPase; Provisional

Probab=98.02  E-value=0.00029  Score=49.20  Aligned_cols=22  Identities=36%  Similarity=0.723  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+|+++|++|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998653

>KOG2484|consensus

Probab=97.97  E-value=9.3e-06  Score=62.36  Aligned_cols=57  Identities=23%  Similarity=0.393  Sum_probs=39.8

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGS   65 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~   65 (200)
                      .+.++++|+|.|++||||+||+|....... ...|+.... -..+..+..   +.|.|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~s-mqeV~Ldk~---i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRS-MQEVKLDKK---IRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhh-hhheeccCC---ceeccCCce
Confidence            457999999999999999999999876532 222222221 224444444   899999993

>KOG0467|consensus

Probab=97.96  E-value=3.9e-05  Score=63.47  Aligned_cols=115  Identities=15%  Similarity=0.165  Sum_probs=75.4

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCC--CC------CcCCCcc-ccee-EEE-----EeCCcEEEEEEEeCCCCCCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTF--RE------SYIPTIE-DTYR-QVI-----SCNKNICTLQITDTTGSHQF   68 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~------~~~~~~~-~~~~-~~~-----~~~~~~~~~~~~D~~G~~~~   68 (200)
                      ..+.-.|.++....-|||||+.+|+..+-  ..      .+..+.+ +..+ .++     ...-+.+.+.++|+||+.++
T Consensus         6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf   85 (887)
T KOG0467|consen    6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF   85 (887)
T ss_pred             CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence            34456788999999999999999975432  11      1111111 1111 111     11225578999999999999


Q ss_pred             hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      .+.......=+|+.++.+|+.++-..+...-+.+..         .....+++|+||+|
T Consensus        86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~---------~~~~~~~lvinkid  135 (887)
T KOG0467|consen   86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAW---------IEGLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHH---------HccCceEEEEehhh
Confidence            999888888899999999988765444432222111         13467899999999

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.96  E-value=0.00024  Score=56.65  Aligned_cols=90  Identities=23%  Similarity=0.224  Sum_probs=49.1

Q ss_pred             EEEEEEeCCCCCCCh----hhHhhccc---cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          55 CTLQITDTTGSHQFP----AMQRLSIS---KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~----~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      +.+.++||+|.....    .....++.   ...-+++|++.+-.  ...+...+..+..       .  .+--+++||.|
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~-------~--~~~~vI~TKlD  368 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR-------L--PLDGLIFTKLD  368 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC-------C--CCCEEEEeccc
Confidence            588999999965432    12222333   23466777777543  2232232222221       0  12368899999


Q ss_pred             CCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700         128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus       128 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      ....  .-  .........+.|+.+++  +|.++
T Consensus       369 et~~--~G--~i~~~~~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        369 ETSS--LG--SILSLLIESGLPISYLT--NGQRV  396 (424)
T ss_pred             cccc--cc--HHHHHHHHHCCCEEEEe--CCCCC
Confidence            6332  11  24455566788887777  45554

>TIGR00959 ffh signal recognition particle protein

Probab=97.95  E-value=3.8e-05  Score=60.95  Aligned_cols=87  Identities=16%  Similarity=0.063  Sum_probs=48.2

Q ss_pred             EEEEEEEeCCCCCCChh-hHhh-----ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          54 ICTLQITDTTGSHQFPA-MQRL-----SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      .+.+.++||+|...... +...     ..-..+.+++|+|.....   ........+....        ...=+|+||.|
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--------~i~giIlTKlD  250 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--------GLTGVVLTKLD  250 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--------CCCEEEEeCcc
Confidence            35799999999543322 1111     122468889999987543   2222223333222        13467899999


Q ss_pred             CCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700         128 ETENREVSAAEGEAEAKMWGCHFMETSA  155 (200)
Q Consensus       128 l~~~~~~~~~~~~~~~~~~~~~~~~vSa  155 (200)
                      .....  -  .........+.|+.+++.
T Consensus       251 ~~~~~--G--~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       251 GDARG--G--AALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             Ccccc--c--HHHHHHHHHCcCEEEEeC
Confidence            53211  1  144455567777776653

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.93  E-value=5.7e-05  Score=41.89  Aligned_cols=43  Identities=23%  Similarity=0.371  Sum_probs=29.4

Q ss_pred             CCEEEEEeeCCC--hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          79 GHAFILVYSCTS--RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        79 ~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      .++++|++|.+.  +.+++....++..+....      .+.|+++|+||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F------~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF------PNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT------TTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc------CCCCEEEEEeccC
Confidence            688999999985  556777777777777766      5689999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.92  E-value=0.00023  Score=49.62  Aligned_cols=83  Identities=17%  Similarity=0.124  Sum_probs=43.7

Q ss_pred             EEEEEEEeCCCCCCChh-h---Hhhc--cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          54 ICTLQITDTTGSHQFPA-M---QRLS--ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~-~---~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      ...+.++|++|...... .   ...+  ....+.+++|++......  .. .....+.+..      .  ..-+|+||.|
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~-~~~~~~~~~~------~--~~~viltk~D  150 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AV-NQAKAFNEAL------G--ITGVILTKLD  150 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HH-HHHHHHHhhC------C--CCEEEEECCc
Confidence            34688899999643211 1   1111  124899999999865432  22 2222232222      1  3567889999


Q ss_pred             CCcccccCHHHHHHHHHHhCCcEE
Q psy8700         128 ETENREVSAAEGEAEAKMWGCHFM  151 (200)
Q Consensus       128 l~~~~~~~~~~~~~~~~~~~~~~~  151 (200)
                      ......  .  ........+.|+-
T Consensus       151 ~~~~~g--~--~~~~~~~~~~p~~  170 (173)
T cd03115         151 GDARGG--A--ALSIRAVTGKPIK  170 (173)
T ss_pred             CCCCcc--h--hhhhHHHHCcCeE
Confidence            654321  1  1224445555544

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.92  E-value=0.00011  Score=59.13  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      --++|+|+.||||||++..|..
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHH
Confidence            4689999999999999999864

>PRK10867 signal recognition particle protein; Provisional

Probab=97.87  E-value=5.3e-05  Score=60.18  Aligned_cols=86  Identities=13%  Similarity=0.062  Sum_probs=46.2

Q ss_pred             EEEEEEeCCCCCCChh-hHhh-----ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          55 CTLQITDTTGSHQFPA-MQRL-----SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                      +.+.++||+|...... +...     .....+.+++|+|.....   +.......+....        ...-+|+||.|.
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--------~i~giIlTKlD~  252 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--------GLTGVILTKLDG  252 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--------CCCEEEEeCccC
Confidence            5799999999553221 1111     112467789999976542   2222222222211        134678899995


Q ss_pred             CcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700         129 TENREVSAAEGEAEAKMWGCHFMETSA  155 (200)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~vSa  155 (200)
                      ...-  -  .........+.|+.+++.
T Consensus       253 ~~rg--G--~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        253 DARG--G--AALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             cccc--c--HHHHHHHHHCcCEEEEeC
Confidence            3211  1  134445566777766653

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.86  E-value=0.00011  Score=57.17  Aligned_cols=93  Identities=12%  Similarity=0.074  Sum_probs=48.2

Q ss_pred             EEEEEEEeCCCCCCChhhH----hhccc--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          54 ICTLQITDTTGSHQFPAMQ----RLSIS--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~----~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      .+.+.++||+|........    ..+..  ..+.+++|++...  ...++...   +....      .-.+--+++||.|
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i---~~~f~------~l~i~glI~TKLD  353 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTI---LPKLA------EIPIDGFIITKMD  353 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHH---HHhcC------cCCCCEEEEEccc
Confidence            3689999999975433211    11222  3356666766532  22222222   22211      1124478899999


Q ss_pred             CCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700         128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus       128 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      ...  ..-  .........+.|+..++  .|.++.+
T Consensus       354 ET~--~~G--~~Lsv~~~tglPIsylt--~GQ~Vpd  383 (407)
T PRK12726        354 ETT--RIG--DLYTVMQETNLPVLYMT--DGQNITE  383 (407)
T ss_pred             CCC--Ccc--HHHHHHHHHCCCEEEEe--cCCCCCc
Confidence            532  222  23444556777877776  4555444

>KOG1534|consensus

Probab=97.85  E-value=5.2e-05  Score=53.62  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=19.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+-++++||.||||||+.+.+..
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~~   25 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMYE   25 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHHH
Confidence            46689999999999999988853

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.84  E-value=0.0011  Score=52.21  Aligned_cols=139  Identities=16%  Similarity=0.149  Sum_probs=72.6

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC--------CC------CCcCCC-----------cccceeEEEE--------eCC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGT--------FR------ESYIPT-----------IEDTYRQVIS--------CNK   52 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~--------~~------~~~~~~-----------~~~~~~~~~~--------~~~   52 (200)
                      .+..|+++|++|+||||.+..|...-        ..      ..+...           .+........        -.-
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            34679999999999999988875310        00      111100           0000000000        001


Q ss_pred             cEEEEEEEeCCCCCCChh----hHhhcccc---CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700          53 NICTLQITDTTGSHQFPA----MQRLSISK---GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK  125 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~----~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  125 (200)
                      ..+.+.++||+|......    ....++..   ..-.++|+|++...  ..+...+   ....      .-.+-=+++||
T Consensus       253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~---~~~~------~~~~~~~I~TK  321 (388)
T PRK12723        253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIF---HQFS------PFSYKTVIFTK  321 (388)
T ss_pred             CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHH---HHhc------CCCCCEEEEEe
Confidence            346899999999654321    11223222   23578899988652  2333222   2222      11245788999


Q ss_pred             CCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700         126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus       126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      .|...  ..-.  ........+.|+..++  .|.++
T Consensus       322 lDet~--~~G~--~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        322 LDETT--CVGN--LISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             ccCCC--cchH--HHHHHHHHCCCEEEEe--CCCCC
Confidence            99533  2111  2334456677777776  55666

>KOG0465|consensus

Probab=97.83  E-value=2.9e-05  Score=62.77  Aligned_cols=117  Identities=17%  Similarity=0.168  Sum_probs=75.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCC------------------cccceeEEEEeCCcEEEEEEEeCCCCCCCh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT------------------IEDTYRQVISCNKNICTLQITDTTGSHQFP   69 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~   69 (200)
                      -.|.+.-.--+||||+.++++...-.......                  +......+. +.-..+.+.++||||+-.+.
T Consensus        40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~-~~w~~~~iNiIDTPGHvDFT  118 (721)
T KOG0465|consen   40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATY-FTWRDYRINIIDTPGHVDFT  118 (721)
T ss_pred             cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceee-eeeccceeEEecCCCceeEE
Confidence            35677777889999999998642211100000                  000111111 11125689999999998887


Q ss_pred             hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc
Q psy8700          70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV  134 (200)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  134 (200)
                      --....++-.|+.++|++...+-.-+. ...|..+.++.        .|.+..+||+|.......
T Consensus       119 ~EVeRALrVlDGaVlvl~aV~GVqsQt-~tV~rQ~~ry~--------vP~i~FiNKmDRmGa~~~  174 (721)
T KOG0465|consen  119 FEVERALRVLDGAVLVLDAVAGVESQT-ETVWRQMKRYN--------VPRICFINKMDRMGASPF  174 (721)
T ss_pred             EEehhhhhhccCeEEEEEcccceehhh-HHHHHHHHhcC--------CCeEEEEehhhhcCCChH
Confidence            777777778899999998876643333 44455555544        799999999998765543

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.81  E-value=7.1e-05  Score=51.98  Aligned_cols=135  Identities=16%  Similarity=0.231  Sum_probs=63.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeC-CCC---------------CCChh--
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDT-TGS---------------HQFPA--   70 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~G~---------------~~~~~--   70 (200)
                      +|.+.|+||+||||++++++..-- .. .-...+++...+.-++...-+.+.|. .|.               ..|.-  
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~-~~-~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~   78 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELK-KK-GLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL   78 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHH-HT-CGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhh-cc-CCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence            689999999999999999875211 00 11223333333334444444555555 221               11110  


Q ss_pred             -----hHhhcc----ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC-CCCcccccCHHHHH
Q psy8700          71 -----MQRLSI----SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC-DETENREVSAAEGE  140 (200)
Q Consensus        71 -----~~~~~~----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~  140 (200)
                           .....+    ..++  ++++|=-.+..+ ....+...+.....     .+.|++.++.+. +.        ....
T Consensus        79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~-----s~~~vi~vv~~~~~~--------~~l~  142 (168)
T PF03266_consen   79 ESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLD-----SNKPVIGVVHKRSDN--------PFLE  142 (168)
T ss_dssp             HHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHC-----TTSEEEEE--SS--S--------CCHH
T ss_pred             HHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHc-----CCCcEEEEEecCCCc--------HHHH
Confidence                 111111    2334  666662221111 12334444555552     557888888776 31        1134


Q ss_pred             HHHHHhCCcEEEecccCCCcH
Q psy8700         141 AEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus       141 ~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      ......+..+++++..+.+.+
T Consensus       143 ~i~~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  143 EIKRRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             HHHTTTTSEEEE--TTTCCCH
T ss_pred             HHHhCCCcEEEEeChhHHhhH
Confidence            445556788888877655544

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.78  E-value=0.00034  Score=52.28  Aligned_cols=92  Identities=16%  Similarity=0.083  Sum_probs=50.4

Q ss_pred             EEEEEEEeCCCCCCCh-hhHh---hcc--ccCCEEEEEeeCCC-hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700          54 ICTLQITDTTGSHQFP-AMQR---LSI--SKGHAFILVYSCTS-RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC  126 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~-~~~~---~~~--~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  126 (200)
                      .+.+.++||+|..... .+..   .++  ...+.+++|++++. ......   +...+   .      .-.+--+++||.
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~---~~~~f---~------~~~~~~~I~TKl  221 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE---IITNF---K------DIHIDGIVFTKF  221 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH---HHHHh---C------CCCCCEEEEEee
Confidence            4689999999966432 1111   121  23467888998763 322222   22222   1      113457899999


Q ss_pred             CCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700         127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus       127 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      |....  .-.  ........+.|+..++  +|+++.+
T Consensus       222 Det~~--~G~--~l~~~~~~~~Pi~~it--~Gq~vp~  252 (270)
T PRK06731        222 DETAS--SGE--LLKIPAVSSAPIVLMT--DGQDVKK  252 (270)
T ss_pred             cCCCC--ccH--HHHHHHHHCcCEEEEe--CCCCCCc
Confidence            96432  222  2344456777877776  4555443

>PRK08118 topology modulation protein; Reviewed

Probab=97.77  E-value=2.4e-05  Score=54.32  Aligned_cols=21  Identities=33%  Similarity=0.768  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ||+|+|++|||||||.+.|..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~   23 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGE   23 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999876

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.77  E-value=2.3e-05  Score=51.24  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999773

...

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.76  E-value=2.5e-05  Score=54.68  Aligned_cols=22  Identities=36%  Similarity=0.744  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      +|+|+|+|||||||+..+|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999875

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.74  E-value=0.004  Score=42.90  Aligned_cols=141  Identities=9%  Similarity=0.105  Sum_probs=97.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEe-CCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD-TTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      ..+...|+++|.-+.++..|..++.....  .        +.         .++++-- .|=..+...    .-.+.|.+
T Consensus        12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~--~--------~~---------l~Vh~a~sLPLp~e~~~----lRprIDlI   68 (176)
T PF11111_consen   12 ELNTATILLVGTEEALLQQLAEAMLEEDK--E--------FK---------LKVHLAKSLPLPSENNN----LRPRIDLI   68 (176)
T ss_pred             CcceeEEEEecccHHHHHHHHHHHHhhcc--c--------ee---------EEEEEeccCCCcccccC----CCceeEEE
Confidence            34578999999999999999999986221  0        11         1111100 000011111    12267999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      +|++|.....+++..+.-+..+....      .-..+.++.+-....+...+...+..+++..+.+|++.+.-...++..
T Consensus        69 VFvinl~sk~SL~~ve~SL~~vd~~f------flGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~  142 (176)
T PF11111_consen   69 VFVINLHSKYSLQSVEASLSHVDPSF------FLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT  142 (176)
T ss_pred             EEEEecCCcccHHHHHHHHhhCChhh------hccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence            99999999999999888776665544      123456666666655666677788899999999999999988888888


Q ss_pred             HHHHHHHHHHh
Q psy8700         163 ELFAELLNLEK  173 (200)
Q Consensus       163 ~~~~~i~~~~~  173 (200)
                      .+-+.+.+.++
T Consensus       143 ~lAqRLL~~lq  153 (176)
T PF11111_consen  143 SLAQRLLRMLQ  153 (176)
T ss_pred             HHHHHHHHHHH
Confidence            88888888764

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.72  E-value=0.00048  Score=49.70  Aligned_cols=62  Identities=32%  Similarity=0.332  Sum_probs=37.3

Q ss_pred             EEEEEeC-CCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          56 TLQITDT-TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        56 ~~~~~D~-~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                      .+.++|| +|.+.+   .+...+++|.++.|+|.+-. ++...........+..       -.++.+|+||+|-
T Consensus       135 e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~~-sl~taeri~~L~~elg-------~k~i~~V~NKv~e  197 (255)
T COG3640         135 EVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEELG-------IKRIFVVLNKVDE  197 (255)
T ss_pred             cEEEEecccchhhh---ccccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC-------CceEEEEEeeccc
Confidence            4555666 343332   23355678999999987643 4555444333232222       2689999999995

>PRK07261 topology modulation protein; Provisional

Probab=97.70  E-value=3.4e-05  Score=53.78  Aligned_cols=21  Identities=29%  Similarity=0.651  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +|+++|++|||||||.+.|..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999999865

>KOG2485|consensus

Probab=97.70  E-value=9.2e-05  Score=55.38  Aligned_cols=63  Identities=25%  Similarity=0.324  Sum_probs=38.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCC---CCcCCCcccceeE---EEEeCCcEEEEEEEeCCCCCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR---ESYIPTIEDTYRQ---VISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      ...++.++|+|-||+|||||+|++......   .......++.++.   .+.+. ..-.+.+.||||.-.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~-~rp~vy~iDTPGil~  208 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS-HRPPVYLIDTPGILV  208 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec-cCCceEEecCCCcCC
Confidence            457899999999999999999998643321   1222222233321   11211 112588999999543

>KOG3859|consensus

Probab=97.69  E-value=0.00016  Score=53.38  Aligned_cols=119  Identities=21%  Similarity=0.291  Sum_probs=68.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcccce----eEEEEeCCcEEEEEEEeCCCCC-------CChh----
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTY----RQVISCNKNICTLQITDTTGSH-------QFPA----   70 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~D~~G~~-------~~~~----   70 (200)
                      .++|+.+|..|-|||||+..|.+-++... ..++.+..-    .+...-.+..+++.++||.|.-       +|..    
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy  121 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY  121 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence            48999999999999999999998776432 222222111    1122224455788999999921       2211    


Q ss_pred             ---hHhhcc---------------ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700          71 ---MQRLSI---------------SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR  132 (200)
Q Consensus        71 ---~~~~~~---------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  132 (200)
                         .-..|+               .+.+++++.+..+.. ++..+...-  +....      .+..+|=++-|+|-+...
T Consensus       122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvt--mk~Ld------skVNIIPvIAKaDtisK~  192 (406)
T KOG3859|consen  122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVT--MKKLD------SKVNIIPVIAKADTISKE  192 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHH--HHHHh------hhhhhHHHHHHhhhhhHH
Confidence               111111               135778888876653 455544332  22222      334566667888876654


Q ss_pred             cc
Q psy8700         133 EV  134 (200)
Q Consensus       133 ~~  134 (200)
                      +.
T Consensus       193 eL  194 (406)
T KOG3859|consen  193 EL  194 (406)
T ss_pred             HH
Confidence            43

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.68  E-value=0.00062  Score=42.20  Aligned_cols=69  Identities=22%  Similarity=0.342  Sum_probs=44.2

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh-HhhccccCCEEEEEeeC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM-QRLSISKGHAFILVYSC   88 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~   88 (200)
                      +++.|.+|+||||+...+...--...         .....++    .+.++|+++....... .......++.++++++.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g---------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG---------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC---------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            67889999999999888765221100         0111112    7899999986543221 24566678999988877


Q ss_pred             CCh
Q psy8700          89 TSR   91 (200)
Q Consensus        89 ~~~   91 (200)
                      ...
T Consensus        69 ~~~   71 (99)
T cd01983          69 EAL   71 (99)
T ss_pred             chh
Confidence            654

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>KOG0464|consensus

Probab=97.68  E-value=1.7e-05  Score=61.54  Aligned_cols=116  Identities=12%  Similarity=0.095  Sum_probs=79.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC--------CCCCcC-C-------Ccc-cceeEEEEeCCcEEEEEEEeCCCCCCCh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGT--------FRESYI-P-------TIE-DTYRQVISCNKNICTLQITDTTGSHQFP   69 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~--------~~~~~~-~-------~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~   69 (200)
                      .-+|.++....+||||...|++.-.        ...... .       ..+ ......+.++=+..++.++||||+-.++
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~  116 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR  116 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence            3568899999999999999986411        100000 0       001 1112344555566799999999999998


Q ss_pred             hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700          70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN  131 (200)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  131 (200)
                      -....+++-.|+++.|||.+.+-.-+.+.-|..     .    +..++|-...+||+|....
T Consensus       117 leverclrvldgavav~dasagve~qtltvwrq-----a----dk~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----A----DKFKIPAHCFINKMDKLAA  169 (753)
T ss_pred             EEHHHHHHHhcCeEEEEeccCCcccceeeeehh-----c----cccCCchhhhhhhhhhhhh
Confidence            888888888999999999998765555544432     1    1245788999999997653

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.66  E-value=0.0014  Score=44.08  Aligned_cols=101  Identities=16%  Similarity=0.115  Sum_probs=59.5

Q ss_pred             EECCCCCCHHHHHHHHhh----CCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700          12 VFGAGGVGKSSLVLRFVK----GTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus        12 ~~G~~~~GKSsli~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      .-|.+|+|||++.-.+..    ..........  +...     ..-.+.+.++|+|+..  .......+..+|.++++.+
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~--D~~~-----~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~   75 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLGKRVLLLDA--DLGL-----ANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTT   75 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEEC--CCCC-----CCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcC
Confidence            456799999998665532    1110000000  0000     0111689999999854  3334567888999999988


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                      .+ ..++......+..+.+..      ...++.+|+|+.+.
T Consensus        76 ~~-~~s~~~~~~~l~~l~~~~------~~~~~~lVvN~~~~  109 (139)
T cd02038          76 PE-PTSITDAYALIKKLAKQL------RVLNFRVVVNRAES  109 (139)
T ss_pred             CC-hhHHHHHHHHHHHHHHhc------CCCCEEEEEeCCCC
Confidence            75 445555555555554432      34577899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG2743|consensus

Probab=97.64  E-value=6.9e-05  Score=55.75  Aligned_cols=73  Identities=18%  Similarity=0.155  Sum_probs=44.5

Q ss_pred             EEEEEEEeCCCCCCChhhHhhcccc--------CCEEEEEeeCCChhH-HHH--HHHHH-HHHHHHhCCCCCCCCCcEEE
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLSISK--------GHAFILVYSCTSRQS-LEE--LRPIW-EVIRETKGGANELASIPIML  121 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~--------~~~~i~v~d~~~~~~-~~~--~~~~~-~~~~~~~~~~~~~~~~p~iv  121 (200)
                      .+...+.+|.|......+...++..        .|+++-|+|+....- +..  ....+ +...+..        ..=-|
T Consensus       145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA--------~AD~I  216 (391)
T KOG2743|consen  145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA--------LADRI  216 (391)
T ss_pred             CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh--------hhhee
Confidence            3577899999988877777776654        489999999754211 100  01111 2222222        12268


Q ss_pred             EeeCCCCCccccc
Q psy8700         122 VGNKCDETENREV  134 (200)
Q Consensus       122 v~nK~Dl~~~~~~  134 (200)
                      ++||.|+.+..+.
T Consensus       217 I~NKtDli~~e~~  229 (391)
T KOG2743|consen  217 IMNKTDLVSEEEV  229 (391)
T ss_pred             eeccccccCHHHH
Confidence            8999999886543

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.62  E-value=4.4e-05  Score=51.38  Aligned_cols=20  Identities=40%  Similarity=0.727  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      |+++|+||||||||++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999974

...

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.58  E-value=0.00024  Score=55.99  Aligned_cols=139  Identities=17%  Similarity=0.141  Sum_probs=70.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC-CC----------CCcCCCc-----------ccceeEEE-------EeCCcEEEEE
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGT-FR----------ESYIPTI-----------EDTYRQVI-------SCNKNICTLQ   58 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~-~~----------~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~   58 (200)
                      .-++++|++||||||++.+|.... ..          +.+....           +.......       ......+.+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999999886411 00          0000000           00000000       0011345789


Q ss_pred             EEeCCCCCCCh-hhH---hhccc-----cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          59 ITDTTGSHQFP-AMQ---RLSIS-----KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        59 ~~D~~G~~~~~-~~~---~~~~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      ++||+|..... ...   ..++.     ...-.++|+|++...  ..+.......   .      .-.+-=+|+||.|..
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f---~------~~~~~glIlTKLDEt  372 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY---E------SLNYRRILLTKLDEA  372 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh---c------CCCCCEEEEEcccCC
Confidence            99999965322 111   11111     134678888887653  1222222212   1      112457889999953


Q ss_pred             cccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700         130 ENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      .  ..-.  ........+.|+..++  .|.++.+
T Consensus       373 ~--~~G~--il~i~~~~~lPI~ylt--~GQ~VPe  400 (432)
T PRK12724        373 D--FLGS--FLELADTYSKSFTYLS--VGQEVPF  400 (432)
T ss_pred             C--CccH--HHHHHHHHCCCEEEEe--cCCCCCC
Confidence            2  2222  3344456777877776  4444433

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.58  E-value=7.8e-05  Score=43.70  Aligned_cols=21  Identities=24%  Similarity=0.564  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~   30 (200)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998763

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.57  E-value=0.00021  Score=47.39  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      --|++.|+.|+|||||++.+...
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            35899999999999999999874

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>KOG4273|consensus

Probab=97.57  E-value=0.0012  Score=48.19  Aligned_cols=110  Identities=16%  Similarity=0.206  Sum_probs=60.7

Q ss_pred             EEEEECCCCC--CHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEE--EEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           9 RVVVFGAGGV--GKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNIC--TLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         9 ki~~~G~~~~--GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      -++++|..|+  ||-+|..+|....+.....++.. ..+-++  ++++.+  .+.+.-.+-.+++.--.........+++
T Consensus         6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicde~~lpn~~~a~pl~a~v   83 (418)
T KOG4273|consen    6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV   83 (418)
T ss_pred             eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence            4689999999  99999999987665433222221 111112  122221  2222222222222111122333457889


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCC-cEEEEeeCCCC
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASI-PIMLVGNKCDE  128 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl  128 (200)
                      +|||++....+..++.|+.-..-        ... -.+.++||.|.
T Consensus        84 mvfdlse~s~l~alqdwl~htdi--------nsfdillcignkvdr  121 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHTDI--------NSFDILLCIGNKVDR  121 (418)
T ss_pred             EEEeccchhhhHHHHhhcccccc--------ccchhheeccccccc
Confidence            99999999999998888732111        111 23456788884

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.56  E-value=4.8e-05  Score=52.56  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.55  E-value=9.8e-05  Score=41.98  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.++.|+.|+||||++.++..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999998764

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.54  E-value=0.00067  Score=51.06  Aligned_cols=107  Identities=13%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC--------------
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ--------------   67 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------------   67 (200)
                      |.+.....++++|++|.|||++++++......     ..+.        +...+.|..+++|....              
T Consensus        56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~-----~~d~--------~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPP-----QSDE--------DAERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             CcccCCCceEEecCCCCcHHHHHHHHHHHCCC-----CCCC--------CCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            55666678999999999999999999874421     1110        11233555666655221              


Q ss_pred             ----------ChhhHhhccccCCEEEEEeeCC-C--hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700          68 ----------FPAMQRLSISKGHAFILVYSCT-S--RQSLEELRPIWEVIRETKGGANELASIPIMLVGNK  125 (200)
Q Consensus        68 ----------~~~~~~~~~~~~~~~i~v~d~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  125 (200)
                                ...+....+.....=++++|=- +  .-+....+..++.+.....    .-++|+|.+|+.
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N----eL~ipiV~vGt~  189 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN----ELQIPIVGVGTR  189 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh----ccCCCeEEeccH
Confidence                      1223334555667777777721 1  1234445666666666654    466899999875

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>KOG2423|consensus

Probab=97.53  E-value=0.00013  Score=56.42  Aligned_cols=82  Identities=16%  Similarity=0.215  Sum_probs=50.0

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh--hhHhhccccCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP--AMQRLSISKGH   80 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~~~~~~~~~~~   80 (200)
                      .-..+.++++|.|++||||+||.|-..+.+.. .+|...-.+.+. .+   ...+-++|+||.--..  +.....+   .
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYI-tL---mkrIfLIDcPGvVyps~dset~ivL---k  376 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYI-TL---MKRIFLIDCPGVVYPSSDSETDIVL---K  376 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHH-HH---HhceeEecCCCccCCCCCchHHHHh---h
Confidence            34568899999999999999999988776432 222222222211 11   1257899999943222  2222233   4


Q ss_pred             EEEEEeeCCChh
Q psy8700          81 AFILVYSCTSRQ   92 (200)
Q Consensus        81 ~~i~v~d~~~~~   92 (200)
                      +++=|=.+.+++
T Consensus       377 GvVRVenv~~pe  388 (572)
T KOG2423|consen  377 GVVRVENVKNPE  388 (572)
T ss_pred             ceeeeeecCCHH
Confidence            566666777765

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.50  E-value=0.00025  Score=46.42  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      --|++-|+-|||||||++.+...
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~   38 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARA   38 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998753

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.50  E-value=0.00018  Score=51.76  Aligned_cols=27  Identities=30%  Similarity=0.513  Sum_probs=22.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      +....-|+|+|++|||||||++.|...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            455667889999999999999999754

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.50  E-value=0.00094  Score=44.57  Aligned_cols=25  Identities=20%  Similarity=0.452  Sum_probs=21.5

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      .--++++|++|+|||++++.+...-
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4568999999999999999998743

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.49  E-value=0.0049  Score=42.95  Aligned_cols=84  Identities=11%  Similarity=0.074  Sum_probs=50.9

Q ss_pred             EEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC
Q psy8700          56 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS  135 (200)
Q Consensus        56 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  135 (200)
                      .+.++|+|+....  .....+..+|.++++++.+. .++.....++..+....       .....+++|+.|.....  .
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~-------~~~~~iv~N~~~~~~~~--~  131 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG-------IKVVGVIVNRVRPDMVE--G  131 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC-------CceEEEEEeCCcccccc--h
Confidence            6999999985432  34455678999999887654 34555555555555422       23567899999854322  1


Q ss_pred             HHHHHHHHHHhCCcEE
Q psy8700         136 AAEGEAEAKMWGCHFM  151 (200)
Q Consensus       136 ~~~~~~~~~~~~~~~~  151 (200)
                      ......+.+..+.+++
T Consensus       132 ~~~~~~~~~~~~~~v~  147 (179)
T cd02036         132 GDMVEDIEEILGVPLL  147 (179)
T ss_pred             hhHHHHHHHHhCCCEE
Confidence            1122344455666654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.49  E-value=0.0025  Score=40.35  Aligned_cols=82  Identities=20%  Similarity=0.257  Sum_probs=49.7

Q ss_pred             EEEEC-CCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700          10 VVVFG-AGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus        10 i~~~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      |++.| .+|+||||+...+...-.. ...+      .-.+..+ ..+.+.++|+|+....  .....+..+|.++++++.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~------vl~~d~d-~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKR------VLLIDLD-PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCc------EEEEeCC-CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence            56777 5799999987776542110 0000      0111112 1268999999996542  333677789999998876


Q ss_pred             CChhHHHHHHHHHH
Q psy8700          89 TSRQSLEELRPIWE  102 (200)
Q Consensus        89 ~~~~~~~~~~~~~~  102 (200)
                      + ..++.....+.+
T Consensus        72 ~-~~s~~~~~~~~~   84 (104)
T cd02042          72 S-PLDLDGLEKLLE   84 (104)
T ss_pred             C-HHHHHHHHHHHH
Confidence            4 445666655554

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.48  E-value=0.003  Score=40.29  Aligned_cols=63  Identities=17%  Similarity=0.177  Sum_probs=42.6

Q ss_pred             EEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700          56 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK  125 (200)
Q Consensus        56 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  125 (200)
                      .+.++|+|+...  ......+..+|.++++++.+ ..+......+...+.+...    .+...+.+|+|+
T Consensus        44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~----~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDY----SLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCC----CCcCceEEEecC
Confidence            789999998654  33445677889999888654 4466777777766665442    114567777774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.45  E-value=0.00011  Score=53.43  Aligned_cols=20  Identities=35%  Similarity=0.624  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      ++++|++|||||||+|-+.+
T Consensus        32 vsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            68999999999999999876

>KOG1970|consensus

Probab=97.44  E-value=0.0014  Score=52.82  Aligned_cols=89  Identities=11%  Similarity=0.105  Sum_probs=46.2

Q ss_pred             CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC
Q psy8700          80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH  159 (200)
Q Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  159 (200)
                      ..+|+|=|+-+....+......+.+..+.    .....|+|++++-+-..+.......-...+....++.-+..+.-...
T Consensus       195 ~~liLveDLPn~~~~d~~~~f~evL~~y~----s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T  270 (634)
T KOG1970|consen  195 KKLILVEDLPNQFYRDDSETFREVLRLYV----SIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPT  270 (634)
T ss_pred             ceEEEeeccchhhhhhhHHHHHHHHHHHH----hcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHH
Confidence            44577777765544444444444444444    24668999999866554332222222222234455555544444444


Q ss_pred             cHHHHHHHHHHHH
Q psy8700         160 NVKELFAELLNLE  172 (200)
Q Consensus       160 ~i~~~~~~i~~~~  172 (200)
                      -+.+.+..|....
T Consensus       271 ~MKK~L~ric~~e  283 (634)
T KOG1970|consen  271 IMKKFLKRICRIE  283 (634)
T ss_pred             HHHHHHHHHHHHh
Confidence            4566666655543

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.44  E-value=0.00012  Score=52.22  Aligned_cols=21  Identities=38%  Similarity=0.563  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++||+|||||||++.+-+
T Consensus        30 vv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            478999999999999998865

>PRK06217 hypothetical protein; Validated

Probab=97.43  E-value=0.00014  Score=51.31  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -+|+|+|.+||||||+.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999763

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.41  E-value=0.00013  Score=52.64  Aligned_cols=21  Identities=33%  Similarity=0.447  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++||+|||||||+|-+-+
T Consensus        33 ~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            379999999999999998866

>PRK10646 ADP-binding protein; Provisional

Probab=97.41  E-value=0.00073  Score=45.92  Aligned_cols=22  Identities=23%  Similarity=0.560  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -|++-|+-|+|||||++.+...
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~   51 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQA   51 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999763

>KOG0780|consensus

Probab=97.40  E-value=0.00017  Score=55.59  Aligned_cols=96  Identities=20%  Similarity=0.279  Sum_probs=53.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh--------------CCCCCC------------cCCCcccce-eEEE--------
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK--------------GTFRES------------YIPTIEDTY-RQVI--------   48 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~--------------~~~~~~------------~~~~~~~~~-~~~~--------   48 (200)
                      +..+--|+++|-.|+||||...+|..              +.|+..            ..|-.+..+ ...+        
T Consensus        98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~  177 (483)
T KOG0780|consen   98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD  177 (483)
T ss_pred             cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence            44455689999999999998777642              222110            011111000 0000        


Q ss_pred             EeCCcEEEEEEEeCCCCCCCh-hhHh-----hccccCCEEEEEeeCCChhHHHHHHH
Q psy8700          49 SCNKNICTLQITDTTGSHQFP-AMQR-----LSISKGHAFILVYSCTSRQSLEELRP   99 (200)
Q Consensus        49 ~~~~~~~~~~~~D~~G~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~   99 (200)
                      .+..+.+.+.|+||.|..... ++-.     .-.-+.|-+|+|.|++-...-.....
T Consensus       178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~  234 (483)
T KOG0780|consen  178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR  234 (483)
T ss_pred             HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence            123466799999999954321 1111     11224699999999886654444333

>PRK14530 adenylate kinase; Provisional

Probab=97.38  E-value=0.00016  Score=52.34  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999998864

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.38  E-value=0.00015  Score=48.46  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++++|+.|+|||||++.+.+.
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEEccCCCccccceeeeccc
Confidence            5799999999999999998873

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.38  E-value=0.00037  Score=54.64  Aligned_cols=113  Identities=16%  Similarity=0.168  Sum_probs=62.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh----CCC------CCCcCCCccc-------ceeEEE------------------E
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK----GTF------RESYIPTIED-------TYRQVI------------------S   49 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~----~~~------~~~~~~~~~~-------~~~~~~------------------~   49 (200)
                      .++..|+++|-.||||||..-.|..    ...      ...|.|...+       .....+                  .
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~  177 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK  177 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence            4567899999999999998777632    111      1122222100       000000                  0


Q ss_pred             eCCcEEEEEEEeCCCCCCChhhHh------hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEe
Q psy8700          50 CNKNICTLQITDTTGSHQFPAMQR------LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG  123 (200)
Q Consensus        50 ~~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  123 (200)
                      .....+.+.++||+|........-      ...-+.|-+++|+|+.-...-.+...   .+.+..+        -.=||+
T Consensus       178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~---aF~e~l~--------itGvIl  246 (451)
T COG0541         178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAK---AFNEALG--------ITGVIL  246 (451)
T ss_pred             HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHH---HHhhhcC--------CceEEE
Confidence            112335899999999554332111      12335789999999876643333333   2333221        225889


Q ss_pred             eCCCC
Q psy8700         124 NKCDE  128 (200)
Q Consensus       124 nK~Dl  128 (200)
                      ||.|.
T Consensus       247 TKlDG  251 (451)
T COG0541         247 TKLDG  251 (451)
T ss_pred             EcccC
Confidence            99995

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.37  E-value=0.00018  Score=47.49  Aligned_cols=21  Identities=24%  Similarity=0.512  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~   30 (200)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999873

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR00235 udk uridine kinase

Probab=97.37  E-value=0.00022  Score=51.34  Aligned_cols=25  Identities=16%  Similarity=0.339  Sum_probs=21.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +...-|++.|++|||||||++.+.+
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999999976

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK03839 putative kinase; Provisional

Probab=97.36  E-value=0.00019  Score=50.45  Aligned_cols=21  Identities=24%  Similarity=0.476  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +|+++|+|||||||+.++|..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~   22 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998865

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.35  E-value=0.00019  Score=48.13  Aligned_cols=21  Identities=43%  Similarity=0.776  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~   30 (200)
                      |+++|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.35  E-value=0.00025  Score=50.11  Aligned_cols=25  Identities=16%  Similarity=0.320  Sum_probs=21.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      ..=|+|+||+|||||||+++|....
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcC
Confidence            3458999999999999999998743

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.35  E-value=0.00021  Score=52.23  Aligned_cols=26  Identities=27%  Similarity=0.616  Sum_probs=23.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      +.+++++|+|++|||||+|+..++..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999999998763

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.34  E-value=0.00018  Score=50.43  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++++|++||||||+++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.33  E-value=0.0023  Score=49.63  Aligned_cols=25  Identities=16%  Similarity=0.437  Sum_probs=22.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      ...|++.|++|||||||+++|+..-
T Consensus       162 ~~nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             CCeEEEECCCCccHHHHHHHHHccc
Confidence            4679999999999999999998743

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.33  E-value=0.00017  Score=47.44  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~   30 (200)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

...

>PRK13949 shikimate kinase; Provisional

Probab=97.32  E-value=0.00023  Score=49.56  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +|+++|++||||||+.+.|..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998864

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.32  E-value=0.0002  Score=51.14  Aligned_cols=21  Identities=19%  Similarity=0.482  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~   30 (200)
                      |++.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998763

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.31  E-value=0.00029  Score=50.78  Aligned_cols=26  Identities=15%  Similarity=0.303  Sum_probs=22.8

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .....|++.|++|||||||.+.|...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999999998763

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.31  E-value=0.0018  Score=50.05  Aligned_cols=25  Identities=12%  Similarity=0.316  Sum_probs=22.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      ...|++.|++|||||||+++|+..-
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~i  184 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREI  184 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhC
Confidence            5689999999999999999998643

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.31  E-value=0.00032  Score=49.06  Aligned_cols=29  Identities=24%  Similarity=0.480  Sum_probs=24.5

Q ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      |+...+..-|++.|++||||||+.+.+..
T Consensus         1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~   29 (176)
T PRK05541          1 MQMKPNGYVIWITGLAGSGKTTIAKALYE   29 (176)
T ss_pred             CCCCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            45556778999999999999999988865

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.31  E-value=0.00021  Score=50.58  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++|+|++|||||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999664

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.30  E-value=0.00021  Score=50.94  Aligned_cols=19  Identities=32%  Similarity=0.553  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy8700          10 VVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~   28 (200)
                      .+++||+|||||||++.|-
T Consensus        36 TAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            4899999999999988773

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.28  E-value=0.00027  Score=46.87  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTF   32 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~   32 (200)
                      -.++++|++|+||||++..+...-.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            4689999999999999999987543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.27  E-value=0.00017  Score=50.12  Aligned_cols=25  Identities=36%  Similarity=0.587  Sum_probs=21.5

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      ..=+++.||+|+||||++++|....
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3457899999999999999998755

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.27  E-value=0.00025  Score=49.80  Aligned_cols=22  Identities=41%  Similarity=0.671  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .|+++|++||||||+++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.27  E-value=0.00024  Score=50.11  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.|+++|++||||||+.+.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999973

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14531 adenylate kinase; Provisional

Probab=97.26  E-value=0.00032  Score=49.47  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..+|+++|+|||||||+...|..
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998865

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.26  E-value=0.00027  Score=44.97  Aligned_cols=21  Identities=33%  Similarity=0.722  Sum_probs=18.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~   28 (200)
                      -.++++|++|||||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            357999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.25  E-value=0.00028  Score=47.49  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|+++|+.|+|||||++.|++
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~   22 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLIN   22 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999876

>KOG0469|consensus

Probab=97.25  E-value=0.00042  Score=55.29  Aligned_cols=116  Identities=21%  Similarity=0.259  Sum_probs=74.9

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCC--------CCCcCCCcccc------eeE---EE--------------EeCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTF--------RESYIPTIEDT------YRQ---VI--------------SCNK   52 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~--------~~~~~~~~~~~------~~~---~~--------------~~~~   52 (200)
                      +.+.-++.++....-|||||..+|....-        ...+..+..+.      .+.   ..              ..++
T Consensus        16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~   95 (842)
T KOG0469|consen   16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG   95 (842)
T ss_pred             ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence            44556778888899999999999864210        01111111000      000   00              1134


Q ss_pred             cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                      ..+.+.++|.||+-.+.+...+.++-.|+.++|+|.-+.--.+.-.-+.+.+.+.         +.-++++||+|-
T Consensus        96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER---------IkPvlv~NK~DR  162 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER---------IKPVLVMNKMDR  162 (842)
T ss_pred             cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh---------ccceEEeehhhH
Confidence            5578999999999999999999999999999999988765444433333333332         344788999994

>PRK08233 hypothetical protein; Provisional

Probab=97.25  E-value=0.00034  Score=49.06  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-|++.|++|||||||.++|..
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~   25 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTH   25 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            35688899999999999999975

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.23  E-value=0.00027  Score=51.36  Aligned_cols=20  Identities=25%  Similarity=0.287  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      |++.|++|||||||++.|.+
T Consensus         2 igI~G~sGSGKTTla~~L~~   21 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQA   21 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHH
Confidence            68999999999999999876

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.21  E-value=0.00036  Score=50.94  Aligned_cols=23  Identities=39%  Similarity=0.689  Sum_probs=20.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..+|+|+|+|||||||+...|..
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.21  E-value=0.0012  Score=44.37  Aligned_cols=23  Identities=39%  Similarity=0.521  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      --|++-|+-|||||||++.+...
T Consensus        26 ~Vv~L~GdLGAGKTtf~rgi~~~   48 (149)
T COG0802          26 DVVLLSGDLGAGKTTLVRGIAKG   48 (149)
T ss_pred             CEEEEEcCCcCChHHHHHHHHHH
Confidence            34789999999999999998753

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.21  E-value=0.00034  Score=48.66  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      =+++++|++|+|||||+|-+.+
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHh
Confidence            3689999999999999998765

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.21  E-value=0.00033  Score=53.16  Aligned_cols=142  Identities=20%  Similarity=0.235  Sum_probs=75.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh--------------CCCCC---------------CcCC-CcccceeEEEEe---
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK--------------GTFRE---------------SYIP-TIEDTYRQVISC---   50 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~--------------~~~~~---------------~~~~-~~~~~~~~~~~~---   50 (200)
                      +..++-|+++|-.|+||||-+-+|..              +.|+.               ..+. ..+.... .+.+   
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA-aVafDAi  214 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA-AVAFDAI  214 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcH-HHHHHHH
Confidence            34588999999999999999888742              11111               0000 0000000 0000   


Q ss_pred             ---CCcEEEEEEEeCCCCCCChh-------hHhhccccC-----CEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCC
Q psy8700          51 ---NKNICTLQITDTTGSHQFPA-------MQRLSISKG-----HAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANEL  114 (200)
Q Consensus        51 ---~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~~-----~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~  114 (200)
                         ....+.+.++||+|.-....       .........     +-+++++|++-+. .+.+. ..++....        
T Consensus       215 ~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA-k~F~eav~--------  285 (340)
T COG0552         215 QAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA-KIFNEAVG--------  285 (340)
T ss_pred             HHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH-HHHHHhcC--------
Confidence               12456899999999443221       112223233     3478888987654 34443 33322222        


Q ss_pred             CCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700         115 ASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus       115 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                         ---+++||.|....--.    ........+.|+..+-  -|++++++
T Consensus       286 ---l~GiIlTKlDgtAKGG~----il~I~~~l~~PI~fiG--vGE~~~DL  326 (340)
T COG0552         286 ---LDGIILTKLDGTAKGGI----ILSIAYELGIPIKFIG--VGEGYDDL  326 (340)
T ss_pred             ---CceEEEEecccCCCcce----eeeHHHHhCCCEEEEe--CCCChhhc
Confidence               22688999995322111    1233557788888775  34444544

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.19  E-value=0.00047  Score=47.96  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=20.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-++++|++|||||||++++..
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~   28 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIP   28 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHH
Confidence            44689999999999999999986

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.18  E-value=0.0025  Score=45.55  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -|++.|++||||||+++.++..
T Consensus         3 lilI~GptGSGKTTll~~ll~~   24 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999998764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK14532 adenylate kinase; Provisional

Probab=97.18  E-value=0.00038  Score=49.27  Aligned_cols=21  Identities=29%  Similarity=0.624  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +|+++|+|||||||+..+|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999865

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.18  E-value=0.00035  Score=49.18  Aligned_cols=20  Identities=35%  Similarity=0.620  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      |+++|+|||||||+..+|..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999865

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.18  E-value=0.0005  Score=50.30  Aligned_cols=26  Identities=27%  Similarity=0.257  Sum_probs=23.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ....+-|++.|++|||||||++.+.+
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~   55 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEA   55 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999999876

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.17  E-value=0.00032  Score=49.77  Aligned_cols=22  Identities=32%  Similarity=0.616  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      +|+++|+|||||||+.+.|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998763

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.17  E-value=0.0055  Score=50.13  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      =+++.||+||||||.++.|..
T Consensus        47 iLlLtGP~G~GKtttv~~La~   67 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAK   67 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            467799999999999988865

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.17  E-value=0.00033  Score=53.70  Aligned_cols=20  Identities=40%  Similarity=0.665  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      ++++||+|||||||++.+.+
T Consensus        32 ~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            68999999999999999976

>PRK06547 hypothetical protein; Provisional

Probab=97.16  E-value=0.00055  Score=47.76  Aligned_cols=26  Identities=23%  Similarity=0.326  Sum_probs=22.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .....|++.|++|||||||.+.|...
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45678899999999999999999763

>PRK02496 adk adenylate kinase; Provisional

Probab=97.15  E-value=0.00045  Score=48.71  Aligned_cols=22  Identities=23%  Similarity=0.533  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+|+++|+|||||||+.+.|..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.15  E-value=0.00042  Score=48.51  Aligned_cols=22  Identities=45%  Similarity=0.459  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.++++|+.|||||||++.+..
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            4689999999999999998853

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.14  E-value=0.0005  Score=53.63  Aligned_cols=24  Identities=38%  Similarity=0.587  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      -+++++|.+|+|||||+|.+.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            479999999999999999998743

>TIGR01351 adk adenylate kinases

Probab=97.14  E-value=0.00036  Score=50.35  Aligned_cols=21  Identities=33%  Similarity=0.631  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ||+|+|+|||||||+..+|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.14  E-value=0.0004  Score=49.80  Aligned_cols=24  Identities=33%  Similarity=0.551  Sum_probs=21.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .--|+++|++|||||||++.|.+.
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            446899999999999999999774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-80
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		7e-74
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		4e-36
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-35
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-35
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		5e-35
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-31
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-27
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-27
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-26
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-26
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-26
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-26
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-26
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-26
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-26
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		4e-26
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		6e-26
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-25
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-25
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-25
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-25
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-25
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		4e-25
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		8e-25
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		9e-25
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-22
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		3e-22
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		6e-22
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-22
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-21
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-21
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-21
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-21
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-21
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		3e-21
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		3e-21
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		3e-21
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		3e-21
1wq1_R	166	Ras-Rasgap Complex Length = 166		3e-21
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-21
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		3e-21
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		3e-21
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-21
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		4e-21
4q21_A	189	Molecular Switch For Signal Transduction: Structura		4e-21
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		4e-21
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		4e-21
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-21
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		5e-21
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-21
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		5e-21
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		5e-21
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		6e-21
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		6e-21
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		7e-21
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		7e-21
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		8e-21
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-20
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-20
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-20
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-20
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-20
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		2e-20
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		3e-20
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-20
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-20
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		4e-20
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		5e-20
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		6e-20
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		6e-20
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		6e-20
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-20
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		7e-20
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-19
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		1e-19
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-19
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-19
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-19
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-19
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-19
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-19
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-19
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-19
2efc_B	181	Ara7-GdpATVPS9A Length = 181		3e-19
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		4e-19
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		4e-19
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		4e-19
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		6e-19
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		7e-19
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		7e-19
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		7e-19
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		8e-19
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		8e-19
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		9e-19
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		9e-19
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-18
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-18
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-18
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		3e-18
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		4e-18
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-18
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		5e-18
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		7e-18
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		7e-18
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		7e-18
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		7e-18
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		9e-18
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		9e-18
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-17
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-17
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		2e-17
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		2e-17
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-17
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-17
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		3e-17
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-17
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		3e-17
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		3e-17
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		4e-17
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		4e-17
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		4e-17
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		4e-17
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		4e-17
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		4e-17
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		4e-17
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		5e-17
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		6e-17
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		6e-17
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-16
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-16
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-16
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		5e-16
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		6e-16
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-15
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-15
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-15
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-15
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-15
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		2e-15
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-15
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-15
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		5e-15
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		5e-15
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-14
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		1e-14
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-14
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		1e-14
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-14
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-14
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-14
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-14
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-14
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-14
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-14
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-14
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		4e-14
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-14
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		5e-14
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		6e-14
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		7e-14
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		7e-14
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		7e-14
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		7e-14
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		7e-14
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		7e-14
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		7e-14
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		8e-14
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		8e-14
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		8e-14
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-13
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		1e-13
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-13
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		1e-13
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		1e-13
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-13
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-13
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-13
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-13
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-13
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-13
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-13
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-13
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-13
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-13
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-13
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-13
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-13
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-13
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-13
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-13
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-13
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		3e-13
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		3e-13
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		4e-13
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-13
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-13
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		5e-13
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		5e-13
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		5e-13
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		5e-13
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-13
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		6e-13
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		9e-13
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		9e-13
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		9e-13
1mh1_A	186	Small G-Protein Length = 186		9e-13
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		9e-13
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		9e-13
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-12
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-12
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		1e-12
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-12
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-12
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-12
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		2e-12
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-12
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		3e-12
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		4e-12
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		4e-12
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		5e-12
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		5e-12
2bku_A	177	Kap95p:rangtp Complex Length = 177		7e-12
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		9e-12
1byu_A	216	Canine Gdp-Ran Length = 216		1e-11
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-11
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-11
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-11
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-11
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-11
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-11
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		2e-11
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		3e-11
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-11
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		3e-11
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		3e-11
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-11
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		4e-11
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		4e-11
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		4e-11
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		4e-11
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		4e-11
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		4e-11
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		5e-11
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		5e-11
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		5e-11
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		5e-11
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		5e-11
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		5e-11
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		5e-11
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		5e-11
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		5e-11
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		5e-11
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		5e-11
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		8e-11
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		8e-11
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		8e-11
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		9e-11
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-10
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		1e-10
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-10
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-10
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-10
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		1e-10
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-10
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-10
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-10
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-10
2kb0_A	178	Cdc42(T35a) Length = 178		2e-10
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-10
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-10
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		3e-10
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		3e-10
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		4e-10
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		5e-10
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		2e-09
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		3e-09
3icq_B	171	Karyopherin Nuclear State Length = 171		3e-09
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		4e-09
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		4e-09
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-09
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		7e-09
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		9e-09
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-08
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		4e-08
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-07
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		3e-05
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		3e-05
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		3e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-04

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score =  295 bits (754), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 142/175 (81%), Positives = 155/175 (88%), Gaps = 3/175 (1%)
Query: 5   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
           SNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQITDTTG
Sbjct: 1   SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 60
Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
           SHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG   ++ SIPIMLVGN
Sbjct: 61  SHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---DVESIPIMLVGN 117
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISL 179
           KCDE+ +REV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SL
Sbjct: 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSL 172

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score =  273 bits (697), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 145/202 (71%), Positives = 170/202 (84%), Gaps = 6/202 (2%)
Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR++YIPTIEDTYRQVISC+K++CTLQIT
Sbjct: 2   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQIT 61
Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILV+S TS+QSLEEL PI+++I + KG   +   IP+M
Sbjct: 62  DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---IPVM 118
Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDET+ REV   E +A A+ W C FMETSAK N+NVKELF ELL LE  RN+SL 
Sbjct: 119 LVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLN 177
Query: 181 LEKK--GQLKGTRKLKEKCSVM 200
           ++ K  G+ K T ++K KC++M
Sbjct: 178 IDGKRSGKQKRTDRVKGKCTLM 199

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score =  147 bits (371), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 106/164 (64%), Gaps = 5/164 (3%)
Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV G+GGVGKS+L ++FV+G F E Y PTIED+YR+ +  +   C L+I DT G+ 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTE 62
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF AM+ L +  G  F LVYS T++ +  +L+ + E I   K    +   +P++LVGNKC
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK----DTDDVPMILVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELFAELL 169
           D  + R V   +G+  A+ W  C F+E+SAK+  NV E+F +L+
Sbjct: 119 DLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLV 162

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 106/164 (64%), Gaps = 5/164 (3%)
Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV G+GGVGKS+L ++FV+G F E Y PTIED+YR+ +  +   C L+I DT G+ 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF AM+ L +  G  F LVYS T++ +  +L+ + E I   K    +   +P++LVGNKC
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK----DTEDVPMILVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELFAELL 169
           D  + R V   +G+  A+ W  C F+E+SAK+  NV E+F +L+
Sbjct: 119 DLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 106/164 (64%), Gaps = 5/164 (3%)
Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV G+GGVGKS+L ++FV+G F + Y PTIED+YR+ +  +   C L+I DT G+ 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF AM+ L +  G  F LVYS T++ +  +L+ + E I   K    +   +P++LVGNKC
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK----DTEDVPMILVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELFAELL 169
           D  + R V   +G+  A+ W  C F+E+SAK+  NV E+F +L+
Sbjct: 119 DLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  143 bits (361), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 105/164 (64%), Gaps = 5/164 (3%)
Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV G+ GVGKS+L ++FV+G F E Y PTIED+YR+ +  +   C L+I DT G+ 
Sbjct: 5   EYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTE 64
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF AM+ L +  G  F LVYS T++ +  +L+ + E I   K    +   +P++LVGNKC
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK----DTDDVPMILVGNKC 120
Query: 127 DETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELFAELL 169
           D  + R V   +G+  A+ W  C F+E+SAK+  NV E+F +L+
Sbjct: 121 DLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLV 164

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/150 (47%), Positives = 98/150 (65%), Gaps = 4/150 (2%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++FV GTF E Y PTIED YR+ I  + +   L+I DT G+ QF +M+ L I  G
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             FILVYS  ++QS ++++P+ + I   K        +P++LVGNK D    REVS++EG
Sbjct: 76  QGFILVYSLVNQQSFQDIKPMRDQIIRVK----RYEKVPVILVGNKVDLESEREVSSSEG 131
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
            A A+ WGC FMETSAK+   V ELFAE++
Sbjct: 132 RALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 4/162 (2%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           +VV+ G   VGK+SL  +FV+G F E Y PT+E+TY ++++  K+   L + DT G  ++
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY 85
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             +    I   H ++LVYS TS  S + +  +++ + E  G       +P++LVGNK D 
Sbjct: 86  SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR----VPVVLVGNKADL 141
Query: 129 TENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
           +  REV A EG+  A+ WG  FME+SA+ N   + +F +++ 
Sbjct: 142 SPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQ 183

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 5/165 (3%)
Query: 5   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
           S +Y++VV GA GVGKS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G
Sbjct: 2   STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
             ++ AM+   +  G  F+ V++  + +S E++    E I+  K   +    +P++LVGN
Sbjct: 62  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED----VPMVLVGN 117
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           KCD   +R V   + +  A+ +G  F+ETSAKT   V + F  L+
Sbjct: 118 KCD-LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 96/163 (58%), Gaps = 5/163 (3%)
Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV GA GVGKS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  
Sbjct: 3   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ AM+   +  G  F+ V++  + +S E++    E I+  K   +    +P++LVGNKC
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    R V + + +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 119 D-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           ++V++ G+GGVGKS+L L+F+   F E Y PT  D+YR+ +  +     + I DT G   
Sbjct: 8   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLED 67
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           + A++      G  F+LV+S T  +S        E I   K    E   IP+++VGNK D
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKA---EEDKIPLLVVGNKSD 124
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNIS 178
             E R+V   E  ++A+ WG  ++ETSAKT  NV ++F +L+   + + +S
Sbjct: 125 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMS 175

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           ++V++ G+GGVGKS+L L+F+   F E Y PT  D+YR+ +  +     + I DT G   
Sbjct: 4   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLED 63
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           + A++      G  F+LV+S T  +S        E I   K    E   IP+++VGNK D
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKA---EEDKIPLLVVGNKSD 120
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNIS 178
             E R+V   E  ++A+ WG  ++ETSAKT  NV ++F +L+   + + +S
Sbjct: 121 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMS 171

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 96/163 (58%), Gaps = 5/163 (3%)
Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV GA GVGKS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  
Sbjct: 3   EYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ AM+   +  G  F+ V++  + +S E++    E I+  K   +    +P++LVGNKC
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    R V + + +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 119 D-LAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 11/172 (6%)
Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MP QS   ++ + G   VGKSSL ++FV+G F +SY PTIE+T+ ++I+ N     LQ+ 
Sbjct: 1   MP-QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLV 59
Query: 61  DTTGSHQ---FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
           DT G  +   FP    + I   + +ILVYS TS +S E ++ I   + +  G       I
Sbjct: 60  DTAGQDEYSIFPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----I 112
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           PIMLVGNK D    R +S  EG+A A+ W   F+E+SAK N    ++F  ++
Sbjct: 113 PIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 96/163 (58%), Gaps = 5/163 (3%)
Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV GA GVGKS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  
Sbjct: 3   EYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ AM+   +  G  F+ V++  + +S E++    E I+  K   +    +P++LVGNKC
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    R V + + +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 119 D-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 96/163 (58%), Gaps = 5/163 (3%)
Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV GA GVGKS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  
Sbjct: 3   EYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ AM+   +  G  F+ V++  + +S E++    E I+  K   +    +P++LVGNKC
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    R V + + +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 119 D-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 11/172 (6%)
Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MP QS   ++ + G   VGKSSL ++FV+G F +SY PTIE+T+ ++I+ N     LQ+ 
Sbjct: 1   MP-QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLV 59
Query: 61  DTTGSHQ---FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
           DT G  +   FP    + I   + +ILVYS TS +S E ++ I   + +  G       I
Sbjct: 60  DTAGQDEYSIFPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----I 112
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           PIMLVGNK D    R +S  EG+A A+ W   F+E+SAK N    ++F  ++
Sbjct: 113 PIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 94/163 (57%), Gaps = 5/163 (3%)
Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV GA GVGKS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ AM+   +  G  F+ V++  + +S E++    E I+  K   +    +P++LVGNK 
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED----VPMVLVGNKS 119
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D   +R V   + +  A+ +G  F+ETSAKT   V + F  L+
Sbjct: 120 D-LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           ++V++ G+GGVGKS+L L+F+   F E Y PT  D+YR+ +  +     + I DT G   
Sbjct: 19  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 78
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           + A++      G  F+ V+S T  +S        E I   K   N    +P +LVGNK D
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 134
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
             + R+VS  E +  A+ W  +++ETSAKT  NV ++F +L+
Sbjct: 135 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           ++V++ G+GGVGKS+L L+F+   F E Y PT  D+YR+ +  +     + I DT G   
Sbjct: 7   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 66
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           + A++      G  F+ V+S T  +S        E I   K   N    +P +LVGNK D
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 122
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
             + R+VS  E +  A+ W  +++ETSAKT  NV ++F +L+
Sbjct: 123 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 164

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           ++V++ G+GGVGKS+L L+F+   F E Y PT  D+YR+ +  +     + I DT G   
Sbjct: 15  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 74
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           + A++      G  F+ V+S T  +S        E I   K   N    +P +LVGNK D
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 130
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
             + R+VS  E +  A+ W  +++ETSAKT  NV ++F +L+
Sbjct: 131 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 10/164 (6%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ- 67
           ++ + G   VGKSSL ++FV+G F +SY PTIE+T+ ++I+ N     LQ+ DT G  + 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 68  --FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
             FP    + I   + +ILVYS TS +S E ++ I   + +  G       IPIMLVGNK
Sbjct: 63  SIFPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----IPIMLVGNK 115
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
            D    R +S  EG+A A+ W   F+E+SAK N    ++F  ++
Sbjct: 116 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 159

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 4/162 (2%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           ++V++ G+GGVGKS+L L+F+   F E Y PT  D+YR+ +  +     + I DT G   
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           + A++      G  F+ V+S T  +S        E I   K   N    +P +LVGNK D
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 120
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
             + R+VS  E +  A  W  +++ETSAKT  NV ++F +L+
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           ++V++ G+GGVGKS+L L+F+   F E Y PT  D+YR+ +  +     + I DT G   
Sbjct: 7   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLED 66
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           + A++      G  F+ V+S T  +S        E I   K   N    +P +LVGNK D
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 122
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
             + R+VS  E +  A+ W  +++ETSAKT  NV ++F +L+
Sbjct: 123 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 164

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score =  109 bits (273), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 94/167 (56%), Gaps = 8/167 (4%)
Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
           +S + ++ +FG  GVGKS+LV+RF+   F   Y PT+E TYR   + +  + +++I DT 
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTA 84
Query: 64  GSHQFPAMQRLS-ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV 122
           G  Q   +QR   +  G  F+LVY  T R S EE+ P+  ++ E K   N    + ++LV
Sbjct: 85  G--QEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN----VTLILV 138
Query: 123 GNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAEL 168
           GNK D   +R+VS  EGE  A    C F E SA T   N+ E+F EL
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 185

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score =  109 bits (273), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 95/169 (56%), Gaps = 10/169 (5%)
Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
           QS   ++ + G   VGKSSL ++FV+G F +S  PTIE+T+ ++I+ N     LQ+ DT 
Sbjct: 1   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTA 60
Query: 64  GSHQ---FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           G  +   FP    + I   + +ILVYS TS +S E ++ I   + +  G       IPIM
Sbjct: 61  GQDEYSIFPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----IPIM 113
Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           LVGNK D    R +S  EG+A A+ W   F+E+SAK N    ++F  ++
Sbjct: 114 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 162

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
           PE    +++++ G  GVGKS L+LRF   T+ +SYI TI   ++ + IS       LQI 
Sbjct: 4   PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIW 63
Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPI 119
           DT G  +F  +        H  I+VY  T R S + ++  I E+ R      N+L     
Sbjct: 64  DTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKL----- 118
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
            LVGNKCD    R V++ EG   A   G  F+ETSAK  +NV++ F
Sbjct: 119 -LVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAF 163

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           YR+VV G GGVGKS+L ++F++  F   Y PTIED+Y +    +     L I DT G  +
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE 65
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F AM+   +  G  F+LV+S T R S EE+      I   K    +    P++L+GNK D
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK----DRDEFPMILIGNKAD 121
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
               R+V+  EG+  A+     +ME SAK   NV + F EL+ +
Sbjct: 122 LDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRV 165

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +  IC L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DTTG  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD   +R V   + 
Sbjct: 94  EGFLCVFAINNTKSFEDIHHYREQIKRVKDSED----VPMVLVGNKCD-LPSRTVDTKQA 148
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  F+ETSAKT   V + F  L+
Sbjct: 149 QDLARSYGIPFIETSAKTRQGVDDAFYTLV 178

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F E Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 83  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 137
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 138 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 167

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 135
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 136 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 165

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 135
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 136 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 165

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 97/163 (59%), Gaps = 5/163 (3%)
Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV GAGGVGKS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ AM+   +  G  F+ V++  + +S E++    E I+  K   +    +P++LVGNKC
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKC 118
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    R V + + +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 119 D-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S  ++    E I+  K   +    +P++LVGNKCD    R V   + 
Sbjct: 94  EGFLCVFAINNSKSFADINLYREQIKRVKDSDD----VPMVLVGNKCD-LPTRTVDTKQA 148
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
              AK +G  F+ETSAKT   V++ F  L+
Sbjct: 149 HELAKSYGIPFIETSAKTRQGVEDAFYTLV 178

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 4/168 (2%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
           P  S  +++VV G GGVGKS+L ++F++  F   Y PTIED+Y ++ S +     L I D
Sbjct: 4   PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILD 63
Query: 62  TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
           T G  +F AM+   +  GH F+LV++   RQS  E+  ++  I   K   +     P++L
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD----FPVVL 119
Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           VGNK D    R+V  +E  A        + E SAK   NV E F +L+
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 167

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 135
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 136 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 165

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGN+CD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNRCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y P+IED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 82  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 136
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 137 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 166

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y P+IED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           K++L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + + PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNK D   +R V   + 
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKDSED----VPMVLVGNKSD-LPSRTVDTKQA 131
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  F+ETSAKT   V + F  L+
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLV 161

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNK D   +R V   + 
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKDSED----VPMVLVGNKSD-LPSRTVDTKQA 131
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  F+ETSAKT   V + F  L+
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLV 161

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIE++YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G  +  AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 87/166 (52%), Gaps = 17/166 (10%)
Query: 8   YRVVVFGAGGVGKSSLVLRF--VKGTFRESYIPTIEDTYRQVISCN---KNICTLQITDT 62
           YRVV+ G  GVGKS+L   F  V  +         EDTY + +  +     I  L + + 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 63  TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLE---ELRPIWEVIRETKGGANELASIPI 119
            G +++     + +  G A+++VYS T R S E   ELR      R+T+        IPI
Sbjct: 67  KGENEWLHDHXMQV--GDAYLIVYSITDRASFEKASELRIQLRRARQTE-------DIPI 117
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           +LVGNK D    REVS +EG A A ++ C F+ETSA   HNVKELF
Sbjct: 118 ILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 83/160 (51%), Gaps = 6/160 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           YRVV+ G  GVGK+SL   F     R+ +    ED Y + ++ +    TL + DT  + +
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 68  FPAM--QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
                 Q   +  G A+++VYS   R S E    +   +R T    ++   +PI+LVGNK
Sbjct: 65  LDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT----HQADHVPIILVGNK 120
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
            D    REVS  EG A A ++ C F+ETSA   HNV ELF
Sbjct: 121 ADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 7/171 (4%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
           P  S+  ++++ G  GVGKS L++RFV+  F  S+I TI   ++ + +  N     LQ+ 
Sbjct: 2   PLGSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 61
Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DT G  +F  +           ILVY  T  ++   ++  ++ + E    AN+ A +  +
Sbjct: 62  DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH---ANDEAQL--L 116
Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
           LVGNK D  E R V+A +GEA AK  G  F+E+SAK + NV E+F  L  L
Sbjct: 117 LVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 166

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
           ++++ G  GVGKS L++RFV+  F  S+I TI   ++ + +  N     LQI DT G  +
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F  +           ILVY  T  ++   ++  ++ + E    AN+ A +  +LVGNK D
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNE---HANDEAQL--LLVGNKSD 119
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
             E R V+A +GEA AK  G  F+E+SAK + NV E+F  L  L
Sbjct: 120 -XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
           ++++ G  GVGKS L++RFV+  F  S+I TI   ++ + +  N     LQI DT G  +
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F  +           ILVY  T  ++   ++  ++ + E    AN+ A +  +LVGNK D
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNE---HANDEAQL--LLVGNKSD 119
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
             E R V+A +GEA AK  G  F+E+SAK + NV E+F  L  L
Sbjct: 120 -METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +     L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNKCD    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKCD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
           ++++ G  GVGKS L++RFV+  F  S+I TI   ++ + +  N     LQ+ DT G  +
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F  +           ILVY  T  ++   ++  ++ + E    AN+ A +  +LVGNK D
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNE---HANDEAQL--LLVGNKSD 119
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
             E R V+A +GEA AK  G  F+E+SAK + NV E+F  L  L
Sbjct: 120 -XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 11/178 (6%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G  GVGK+ ++ RF +  F  ++I TI   ++ + I  +     LQI DT G  
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F  +           +LVY  T+ +S + +R  W  IR  +  A+  A +  M++GNKC
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-W--IRNIEEHAS--ADVEKMILGNKC 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184
           D  + R+VS   GE  A  +G  FMETSAK N NV+  F  L      R+I  +++KK
Sbjct: 122 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA-----RDIKAKMDKK 174

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V  G   VGK+SL+ RF+  +F  +Y  TI  D   + +        LQ+ DT G  
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++    I    A ++VY  T+  S ++     + +R  +G     + + IMLVGNK 
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-----SDVIIMLVGNKT 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D  + R+VS  EGE +AK     F+ETSAK  +NVK+LF
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
           ++++ G  GVGKS L++RFV+  F  S+I TI   ++ + +  N     LQ+ DT G  +
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F  +           ILVY  T  ++   ++  ++ + E    AN+ A +  +LVGNK D
Sbjct: 82  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH---ANDEAQL--LLVGNKSD 136
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
             E R V+A +GEA AK  G  F+E+SAK + NV E+F  L  L
Sbjct: 137 -METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 179

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V  G   VGK+SL+ RF+  +F  +Y  TI  D   + +        LQ+ DT G  
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++    I    A ++VY  T+  S ++     + +R  +G     + + IMLVGNK 
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-----SDVIIMLVGNKT 128
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF----AELLNLEKNRN------ 176
           D  + R+VS  EGE +AK     F+ETSAK  +NVK+LF    A L  +E  ++      
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 177 ISLQLEK 183
           I ++LEK
Sbjct: 189 IDIKLEK 195

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V  G   VGK+SL+ RF+  +F  +Y  TI  D   + +        LQ+ DT G  
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++    I      ++VY  T+  S ++     + +R  +G     + + IMLVGNK 
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERG-----SDVIIMLVGNKT 117
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D  + R+++  EGE  AK     F+ETSAKT +NVK+LF
Sbjct: 118 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V  G   VGK+SL+ RF+  +F  +Y  TI  D   + +        LQ+ DT G  
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++    I      ++VY  T+  S  +     + +R  +G     + + IMLVGNK 
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-----SDVIIMLVGNKT 129
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D ++ R+VS  EGE +AK     F+ETSAK  +NVK+LF
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V  G   VGK+SL+ RF+  +F  +Y  TI  D   + +        LQ+ DT G  
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++    I      ++VY  T+  S ++     + +R  +G     + + IMLVGNK 
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-----SDVIIMLVGNKT 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF----AELLNLEKNRN------ 176
           D  + R+VS  EGE +AK     F+ETSAK  +NVK+LF    A L  +E  ++      
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 181
Query: 177 ISLQLEK 183
           I ++LEK
Sbjct: 182 IDIKLEK 188

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V  G   VGK+SL+ RF+  +F  +Y  TI  D   + +        LQ+ DT G  
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++    I      ++VY  T+  S ++     + +R  +G     + + IMLVGNK 
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-----SDVIIMLVGNKT 116
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D  + R+VS  EGE +AK     F+ETSAK  +NVK+LF
Sbjct: 117 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT    ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNK D    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKXD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V  G   VGK+SL+ RF+  +F  +Y  TI  D   + +        LQ+ DT G  
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++    I      ++VY  T+  S ++     + +R  +G     + + IMLVGNK 
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-----SDVIIMLVGNKT 131
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF----AELLNLEKNRN------ 176
           D  + R+VS  EGE +AK     F+ETSAK  +NVK+LF    A L  +E  ++      
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 191
Query: 177 ISLQLEK 183
           I ++LEK
Sbjct: 192 IDIKLEK 198

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT    ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNK D    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKXD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 11/177 (6%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G  GVGK+ ++ RF +  F  ++I TI   ++ + I  +     LQI DT G  
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F  +           +LVY  T+ +S + +R  W  IR  +  A+  A +  M++GNKC
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-W--IRNIEEHAS--ADVEKMILGNKC 123
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEK 183
           D  + R+VS   GE  A  +G  FMETSAK N NV+  F  L      R+I  +++K
Sbjct: 124 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA-----RDIKAKMDK 175

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
           PE    +++++ G  GVGKS L+LRF   T+ ESYI TI   ++ + I  +     LQI 
Sbjct: 1   PEYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIP 118
           DT G  +F  +        H  I+VY  T ++S   ++  W  E+ R      N+L    
Sbjct: 61  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKL---- 115
Query: 119 IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
             LVGNKCD T  + V     +  A   G  F+ETSAK   NV++ F
Sbjct: 116 --LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 10/170 (5%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
           PE    +++++ G  GVGKS L+LRF   T+ ESYI TI   ++ + I  +     LQI 
Sbjct: 1   PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIP 118
           DT G  +F  +        H  I+VY  T ++S   ++  W  E+ R      N+L    
Sbjct: 61  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKL---- 115
Query: 119 IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
             LVGNKCD T  + V     +  A   G  F+ETSAK   NV++ F  +
Sbjct: 116 --LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 6/166 (3%)
Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDT 62
           +S + ++V+ G  G GKSSLVLRFVK  F E    TI   +  Q ++ N      +I DT
Sbjct: 9   KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDT 68
Query: 63  TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV 122
            G  ++ ++  +      A I+V+  T++ S E  +  W    + +G  N    + + L 
Sbjct: 69  AGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK-WVQELQAQGNPN----MVMALA 123
Query: 123 GNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           GNK D  + R+V+A + +  A+  G  FMETSAKT  NVKE+F E+
Sbjct: 124 GNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
           PE    +++++ G  GVGKS L+LRF   T+ ESYI TI   ++ + I  +     LQI 
Sbjct: 20  PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 79
Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPI 119
           DT G  +F  +        H  I+VY  T ++S   ++  + E+ R      N+L     
Sbjct: 80  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL----- 134
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
            LVGNKCD T  + V     +  A   G  F+ETSAK   NV++ F  +
Sbjct: 135 -LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 182

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 5/165 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           Y++VV G GGVGKS+L ++F +  F + Y PTIED+YR+    +     L + DT G  +
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEE 78
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F AM+   +  G  F++VYS T + S E +    ++I   K    +  S P++LV NK D
Sbjct: 79  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK----DRESFPMILVANKVD 134
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAELLNL 171
               R+V+  +G+  A  +   ++ETSAK    NV + F +L+ +
Sbjct: 135 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
           PE    +++++ G  GVGKS L+LRF   T+ ESYI TI   ++ + I  +     LQI 
Sbjct: 11  PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPI 119
           DT G  +F  +        H  I+VY  T ++S   ++  + E+ R      N+L     
Sbjct: 71  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL----- 125
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
            LVGNKCD T  + V     +  A   G  F+ETSAK   NV++ F  +
Sbjct: 126 -LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
           PE    +++++ G  GVGKS L+LRF   T+ ESYI TI   ++ + I  +     LQI 
Sbjct: 28  PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 87
Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPI 119
           DT G  +F  +        H  I+VY  T ++S   ++  + E+ R      N+L     
Sbjct: 88  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL----- 142
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
            LVGNKCD T  + V     +  A   G  F+ETSAK   NV++ F
Sbjct: 143 -LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 87/166 (52%), Gaps = 17/166 (10%)
Query: 8   YRVVVFGAGGVGKSSLVLRF--VKGTFRESYIPTIEDTYRQVISCN---KNICTLQITDT 62
           YRVV+ G  GVGKS+L   F  V  +         EDTY + +  +     I  L + + 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 63  TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLE---ELRPIWEVIRETKGGANELASIPI 119
            G +++  +    +  G A+++VYS T R S E   ELR      R+T+        IPI
Sbjct: 98  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTE-------DIPI 148
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           +LVGNK D    REVS +EG A A ++ C F+ETSA   HNVKELF
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 86/166 (51%), Gaps = 17/166 (10%)
Query: 8   YRVVVFGAGGVGKSSLVLRF--VKGTFRESYIPTIEDTYRQVISCN---KNICTLQITDT 62
           YRVV+ G  GVGKS+L   F  V  +         EDTY + +  +     I  L + + 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 63  TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLE---ELRPIWEVIRETKGGANELASIPI 119
            G +++  +    +  G A+++VYS T R S E   ELR      R+T+        IPI
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTE-------DIPI 117
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           +LVGNK D    REVS +EG A A ++   F+ETSA   HNVKELF
Sbjct: 118 ILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           Y++V  G   VGK+S++ RF   TF  +Y  TI  D   + +  ++    LQ+ DT G  
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++    I    A I+VY  T+RQS E      + I   +G       + I LVGNK 
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-----KDVIIALVGNKT 116
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D  + R+V+  EG  +A+ +   F ETSAK  HN+K LF
Sbjct: 117 DLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
           PE    +++++ G  GVGK+ L+LRF   T+ ESYI TI   ++ + I  +     LQI 
Sbjct: 11  PEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPI 119
           DT G  +F  +        H  I+VY  T ++S   ++  + E+ R      N+L     
Sbjct: 71  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL----- 125
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
            LVGNKCD T  + V     +  A   G  F+ETSAK   NV++ F  +
Sbjct: 126 -LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 20  KSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG 79
           KS+L ++ ++  F +   PTIED+YR+ +  +   C L I DT G  ++ AM+   +  G
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG 139
             F+ V++  + +S E++    E I+  K   +    +P++LVGNK D    R V + + 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKSD-LAARTVESRQA 130
Query: 140 EAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 7/172 (4%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYR-QVISCNKNICTLQITDTTGS 65
           ++V++ G  GVGK+ L++RF  G F   ++I T+   +R +V+  +     LQ+ DT G 
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +F ++        HA +L+Y  T++ S + ++     I E          + +ML+GNK
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-----HDVALMLLGNK 125
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNI 177
            D    R V   +GE  AK +G  FMETSAKT  NV   F  +    K R++
Sbjct: 126 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSM 177

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 87/166 (52%), Gaps = 17/166 (10%)
Query: 8   YRVVVFGAGGVGKSSLVLRF--VKGTFRESYIPTIEDTYRQVISCN---KNICTLQITDT 62
           YRVV+ G  GVGKS+L   F  V  +         EDTY + +  +     I  L + + 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 63  TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLE---ELRPIWEVIRETKGGANELASIPI 119
            G +++  +    +  G A+++VYS T R S E   ELR      R+T+        IPI
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTE-------DIPI 117
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           +LVGNK D    REVS +EG A A ++ C F+ETSA   HNVKELF
Sbjct: 118 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 10/168 (5%)
Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQI 59
           MPE    +++++ G  GVGKS L+LRF   T+ ESYI TI   ++ + I  +     LQI
Sbjct: 3   MPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
Query: 60  TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASI 117
            DT G  +F  +        H  I+VY  T ++S   ++  W  E+ R      N+L   
Sbjct: 63  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYASENVNKL--- 118
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
              LVGNK D T  + V     +  A   G  F+ETSAK   NV++ F
Sbjct: 119 ---LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 10/168 (5%)
Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQI 59
           MPE    +++++ G  GVGKS L+LRF   T+ ESYI TI   ++ + I  +     LQI
Sbjct: 3   MPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 62
Query: 60  TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASI 117
            DT G  +F  +        H  I+VY  T ++S   ++  W  E+ R      N+L   
Sbjct: 63  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYASENVNKL--- 118
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
              LVGNK D T  + V     +  A   G  F+ETSAK   NV++ F
Sbjct: 119 ---LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 89/177 (50%), Gaps = 10/177 (5%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G  GVGKSSL+LRF   TF  SYI TI   ++ + +  N     LQI DT G  
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F  +        H  I+VY  TS +S   ++  W  + E     +++  I   LVGNK 
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-W--LHEINQNCDDVCRI---LVGNKN 123
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF---AELLNLEKNRNISLQ 180
           D+ E + V   +    A   G    ETSAK N NV+E+F    EL+   K  N++ Q
Sbjct: 124 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           Y++VV G GGVGKS+L ++F +  F + Y PTIED+Y +    +     L + DT G  +
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 78
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F AM+   +  G  F++VYS T + S E +    ++I   K    +  S P++LV NK D
Sbjct: 79  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK----DRESFPMILVANKVD 134
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAELLNL 171
               R+V+  +G+  A  +   ++ETSAK    NV + F +L+ +
Sbjct: 135 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 9/161 (5%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ 67
           ++V+ G   VGKSS+VLRFV   F E+  PTI   +  Q ++ N++    +I DT G  +
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F ++         A ++VY  T  QS  + R  W  ++E    A++   I I LVGNK D
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARH-W--VKELHEQASK--DIIIALVGNKID 119
Query: 128 ---ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
              E   R+V+  EGE  A+  G  F ETSAKT  NV ++F
Sbjct: 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 10/170 (5%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQIT 60
           PE    +++++ G  GVGKS L+LRF   T+ ESYI TI   ++ + I  +     LQI 
Sbjct: 3   PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIP 118
           DT G  +F  +        H  I+VY  T ++S   ++  W  E+ R      N+L    
Sbjct: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKL---- 117
Query: 119 IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
             LVG KCD T  + V     +  A   G  F+ETSAK   NV++ F  +
Sbjct: 118 --LVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 165

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
           ++++ G  GVGKS L+LRF   T+ ESYI TI   ++ + I  +     LQI DT G  +
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNK 125
           F  +        H  I+VY  T ++S   ++  W  E+ R      N+L      LVGNK
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKL------LVGNK 113
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           CD T  + V     +  A   G  F+ETSAK   NV++ F  +
Sbjct: 114 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 156

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 5/165 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           Y++VV G GGVGKS+L ++F +  F   Y PTIED+Y +    +     L + DT G  +
Sbjct: 14  YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 73
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F AM+   +  G  F++VYS T + S E +    ++I   K    +  S P++LV NK D
Sbjct: 74  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK----DRESFPMILVANKVD 129
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAELLNL 171
               R+V+  +G+  A  +   ++ETSAK    NV + F +L+ +
Sbjct: 130 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 174

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++ ++ G  GVGKS L+L+F    F+  +  TI   +  ++I+ +     LQI DT G  
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
            F ++ R         +LVY  T R +   L    E  R+        +++ IML+GNK 
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSN-----SNMVIMLIGNKS 125
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D    REV   EGEA A+  G  FMETSAKT  NV+E F
Sbjct: 126 DLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 6/166 (3%)
Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQI 59
           +P  S  ++ ++ G  GVGKS L+L+F    F+  +  TI   +  ++++ +     LQI
Sbjct: 15  VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQI 74
Query: 60  TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI 119
            DT G   F ++ R         +LVY  T R++   L    E  R+     +  +++ I
Sbjct: 75  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ-----HSSSNMVI 129
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           ML+GNK D    R+V   EGEA A+  G  FMETSAKT  NV+E F
Sbjct: 130 MLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +++V+ G   VGKSSLVLRFVKG F E    TI   +  Q +  +      +I DT G  
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++  +      A I+VY  T++++    +  W  ++E +  A+   SI I L GNK 
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAK-TW--VKELQRQASP--SIVIALAGNKA 123
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D    R V   E +A A      FMETSAKT  NV +LF
Sbjct: 124 DLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 162

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +++V+ G   VGKSSLVLRFVKG F E    TI+  +  Q +  +      +I DT G  
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++  +      A I+VY  T+  +    +  W  ++E +  A+   +I I L GNK 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-W--VKELQRQASP--NIVIALAGNKA 120
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D    R V   E +A A      FMETSAKT  NV E+F
Sbjct: 121 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 5/165 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           Y++VV G GGVGKS+L ++F +  F   Y PTIED+Y +    +     L + DT G  +
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 78
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F AM+   +  G  F++VYS T + S E +    ++I   K    +  S P++LV NK D
Sbjct: 79  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK----DRESFPMILVANKVD 134
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAELLNL 171
               R+V+  +G+  A  +   ++ETSAK    NV + F +L+ +
Sbjct: 135 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 16/180 (8%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDT---TG 64
           Y+V++ GA GVGKS+L  R   G            TY + I  +    +L + D     G
Sbjct: 8   YKVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
               P      ++ G A+++VYS T + S E+   +   +R     A +   +PI+LVGN
Sbjct: 67  GRWLPGH---CMAMGDAYVIVYSVTDKGSFEKASELRVQLRR----ARQTDDVPIILVGN 119
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184
           K D   +REVS  EG A A ++ C F+ETSA  +HNV+ LF  ++     R I L+ + K
Sbjct: 120 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV-----RQIRLRRDSK 174

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 16/180 (8%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDT---TG 64
           Y+V++ GA GVGKS+L  R   G            TY + I  +    +L + D     G
Sbjct: 8   YKVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
               P      ++ G A+++VYS T + S E+   +   +R     A +   +PI+LVGN
Sbjct: 67  GRWLPGH---CMAMGDAYVIVYSVTDKGSFEKASELRVQLRR----ARQTDDVPIILVGN 119
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184
           K D   +REVS  EG A A ++ C F+ETSA  +HNV+ LF  ++     R I L+ + K
Sbjct: 120 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV-----RQIRLRRDSK 174

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +++V+ G   VGKSSLVLRFVKG F E    TI   +  Q +  +      +I DT G  
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++  +      A I+VY  T+ +S    +  W  ++E +  A+   +I I L GNK 
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 122
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D    R V   E ++ A      FMETSAKT+ NV E+F
Sbjct: 123 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 161

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +++V+ G   VGKSSLVLRFVKG F E    TI   +  Q +  +      +I DT G  
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++  +      A I+VY  T+ +S    +  W  ++E +  A+   +I I L GNK 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D    R V   E ++ A      FMETSAKT+ NV E+F
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 11/161 (6%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDT---TG 64
           Y+V++ GA GVGKS+L  R   G            TY + I  +    +L + D     G
Sbjct: 3   YKVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
               P      ++ G A+++VYS T + S E+   +   +R     A +   +PI+LVGN
Sbjct: 62  GRWLPGH---CMAMGDAYVIVYSVTDKGSFEKASELRVQLRR----ARQTDDVPIILVGN 114
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           K D   +REVS  EG A A ++ C F+ETSA  +HNV+ LF
Sbjct: 115 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 6/165 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G   VGK+S + R+   +F  +++ T+   ++ + I  N     LQI DT G  
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++  +          FIL+Y  T+ +S   ++  W    +T    N      ++LVGNKC
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNA----QVLLVGNKC 120
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
           D  + R VS+  G   A   G  F E SAK N NVK+ F  L+++
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 165

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQ 67
           ++VV G G VGKSS++ R+ KG F + Y  TI  D   + I  N     L + DT G  +
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F A+ +       A +LV+S T R+S E +    E +        E+  IP  LV NK D
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV------VAEVGDIPTALVQNKID 120
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
             ++  +   E E  AK     F  TS K + NV E+F  L
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +++V+ G   VGKSSLVLRFVKG F E    TI   +  Q +  +      +I DT G  
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++  +      A I+VY  T+ +S    +  W  ++E +  A+   +I I L GNK 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQASP--NIVIALSGNKA 120
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D    R V   E ++ A      FMETSAKT+ NV E+F
Sbjct: 121 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 159

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +++V+ G   VGKSSLVLRFVKG F E    TI   +  Q +  +      +I DT G  
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++  +      A I+VY  T+  +    +  W  ++E +  A+   +I I L GNK 
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-W--VKELQRQASP--NIVIALAGNKA 118
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D    R V   E +A A      FMETSAKT  NV E+F
Sbjct: 119 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 157

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +++V+ G   VGKSSLVLRFVKG F E    TI   +  Q +  +      +I DT G  
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++  +      A I+VY  T+ +S    +  W  ++E +  A+   +I I L GNK 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D    R V   E ++ A      FMETSAKT+ NV E+F
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +++V+ G   VGKSSLVLRFVKG F E    TI   +  Q +  +      +I DT G  
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++  +      A I+VY  T+ +S    +  W  ++E +  A+   +I I L GNK 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D    R V   E ++ A      FMETSAKT+ NV E+F
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +++V+ G   VGKSSLVLRFVKG F E    TI   +  Q +  +      +I DT G  
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++  +      A I+VY  T+ +S    +  W  ++E +  A+   +I I L GNK 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D    R V   E ++ A      FMETSAKT+ NV E+F
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 6/162 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G  GVGK+ LV RF +G F      TI  D   + +  N     LQI DT G  
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++ +      +A IL Y  T  +S   L P W  +RE +  A+    +  +LVGNK 
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCL-PEW--LREIEQYASN--KVITVLVGNKI 141
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           D  E REVS    E  ++    +++ETSAK + NV++LF +L
Sbjct: 142 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 91/171 (53%), Gaps = 8/171 (4%)
Query: 1   MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTL 57
           +P  S  Y  +VV+ G G VGK+SLVLR+ +  F + +I T++ ++  + ++       L
Sbjct: 12  VPRGSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNL 71
Query: 58  QITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
            I DT G  +F A+  +     +  ILVY  T   S ++++   + +R+  G  NE   I
Sbjct: 72  AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NE---I 126
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
            + +VGNK D  + R VS  E E+ A+  G     TSAK N  ++ELF +L
Sbjct: 127 CLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 177

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +++V+ G   VGKSSLVLRFVKG F E    TI   +  Q +  +      +I DT G  
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++  +      A I+VY  T+ +S    +  W  ++E +  A+   +I I L GNK 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D    R V   E ++ A      FMETSAKT+ NV E+F
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
           +V++ G+ GVGK+SL+ RF   TF E+   T+   ++ + +        LQI DT G  +
Sbjct: 28  QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F ++           ILVY  T +++ ++L P W  ++     A+E A   ++LVGNK D
Sbjct: 88  FNSITSAYYRSAKGIILVYDITKKETFDDL-PKW--MKMIDKYASEDAE--LLLVGNKLD 142
Query: 128 ETENREVSAAEGEAEA-KMWGCHFMETSAKTNHNVKELFAELLN 170
              +RE++  +GE  A ++ G  F E SAK N NV E+F +L++
Sbjct: 143 CETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++VV+ G G VGK+SLVLR+ +  F + +I T++ ++  + ++       L I DT G  
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F A+  +     +  ILVY  T   S ++++   + +R+  G  NE   I + +VGNK 
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NE---ICLCIVGNKI 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           D  + R VS  E E+ A+  G     TSAK N  ++ELF +L
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +++V+ G   VGKSSLVLRFVKG F E    TI   +  Q +  +      +I DT G  
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++  +      A I+VY  T+ +S    +  W  ++E +  A+   +I I L GNK 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D    R V   E ++ A      FMETSAKT+ NV E+F
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 6/165 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G   VGK+S + R+   +F  +++ T+   ++ + I  N     LQI DT G  
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++  +          FIL Y  T+ +S   ++  W    +T    N      ++LVGNKC
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQD-WSTQIKTYSWDNA----QVLLVGNKC 123
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
           D  + R VS+  G   A   G  F E SAK N NVK+ F  L+++
Sbjct: 124 DXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 168

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +++V+ G   VGKSSLVLRFVKG F E    TI   +  Q +  +      +I DT G  
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++  +      A I+VY  T+  +    +  W  ++E +  A+   +I I L GNK 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-W--VKELQRQASP--NIVIALAGNKA 120
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D    R V   E +A A      FMETSAKT  NV E+F
Sbjct: 121 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 6/162 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++VV+ G G VGK+SLVLR+ +  F + +I T+  ++  + ++       L I DT G  
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F A+  +     +  ILVY  T   S ++++   + +R+  G  NE   I + +VGNK 
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NE---ICLCIVGNKI 121
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           D  + R VS  E E+ A+  G     TSAK N  ++ELF +L
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + V  G G VGK+ +++ +   TF   Y+PT+ D +   +  + +   L + DT G   +
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS      F+L +S  S+ S E +   W  + E K  A     IPI+LVG K D 
Sbjct: 68  NRLRPLSYRGADVFLLAFSLISKASYENIHKKW--LPELKHYA---PGIPIVLVGTKLDL 122
Query: 129 TENRE----------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELF 165
            ++++          ++ A+GE   KM G   ++E S+KT  NVK +F
Sbjct: 123 RDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           +++V+ G   VGKSSLVLRFVKG F E    TI   +  Q +  +      +I DT G  
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++         A I+VY  T+ +S    +  W  ++E +  A+   +I I L GNK 
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKN-W--VKELQRQAS--PNIVIALSGNKA 122
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           D    R V   E ++ A      F ETSAKT+ NV E+F  +
Sbjct: 123 DLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAI 164

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ 67
           +V + G  GVGKSS+V RFV+ +F  +  PTI  ++  + +     +    I DT G  +
Sbjct: 7   KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F A+  +      A I+VY  T  ++   L+  W  +RE +       SI + + GNKCD
Sbjct: 67  FRALAPMYYRGSAAAIIVYDITKEETFSTLKN-W--VRELRQHGP--PSIVVAIAGNKCD 121
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
            T+ REV   + +  A      F+ETSAK   N+ ELF E+
Sbjct: 122 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 162

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 6/158 (3%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ 67
           +V + G  GVGKSS+V RFV+  F  +  PTI  ++  + + C   +    I DT G  +
Sbjct: 25  KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F ++  +      A ++VY  T + S   L+  W  ++E K    E  +I + + GNKCD
Sbjct: 85  FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-W--VKELKEHGPE--NIVMAIAGNKCD 139
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
            ++ REV   + +  A+  G   +ETSAK   N++ELF
Sbjct: 140 LSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + V  G G VGK+ +++ +   TF   Y+PT+ D +   +  + N   L + DT G   +
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDY 67
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS      FIL +S  S+ S E +   W  I E +  A     +PI+LVG K D 
Sbjct: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKW--IPELRHYA---PGVPIILVGTKLDL 122
Query: 129 TENRE----------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
            ++++          ++  +GE   K+ G   ++E S+KT  NVK +F
Sbjct: 123 RDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 80/162 (49%), Gaps = 6/162 (3%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ 67
           ++++ G  GVGKSSL+LRF   TF      TI   ++ + IS + N   L I DT G  +
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F  +           ILVY  T R +  +L   W    ET    N++ +    LVGNK D
Sbjct: 77  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVN---XLVGNKID 132
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           + ENREV   EG   A+     F+E SAKT   V+  F EL+
Sbjct: 133 K-ENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELV 173

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + V  G G VGK+ L++ +   TF   Y+PT+ D +   +  N     L + DT G   +
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY 69
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS      FIL +S  S+ S E +   W  I E K  A     +PI+LVG K D 
Sbjct: 70  NRLRPLSYRGADVFILAFSLISKASYENVSKKW--IPELKHYA---PGVPIVLVGTKLDL 124
Query: 129 TENRE----------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
            ++++          ++  +GE   K+ G   ++E S+K+  NVK +F
Sbjct: 125 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 6/164 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G   VGK+S + R+   TF  +++ T+   ++ + +  ++    LQI DT G  
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++  +          FIL+Y  T+ +S   ++  W    +T    N      ++LVGNKC
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNA----QVILVGNKC 138
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
           D  E R V   +G+  A+  G  F E SAK N +V++ F  L++
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD 182

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ 67
           +V + G  GVGKSS++ RFV+ +F  +  PTI  ++  + +     +    I DT G  +
Sbjct: 8   KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 67
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F A+  +      A I+VY  T  ++   L+  W  +RE +       SI + + GNKCD
Sbjct: 68  FRALAPMYYRGSAAAIIVYDITKEETFSTLKN-W--VRELRQHGP--PSIVVAIAGNKCD 122
Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
            T+ REV   + +  A      F+ETSAK   N+ ELF E+
Sbjct: 123 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIP-TIEDTYRQVISCNKNICTLQITDTTGSH 66
           ++V++ G  GVGKS+L   F       ++ P   EDTY + I  +K   TL + D     
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 67  QFPAMQRLS-ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
                 R   +  G AF++V+S T R+S  +   + E +   + G      +P++LVGNK
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSK---VPETLLRLRAGRPH-HDLPVILVGNK 139
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF---AELLNLEKNRN 176
            D   +REVS  EG   A    C  +ETSA  +HN +ELF      + L + RN
Sbjct: 140 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           Y++V+ G   VGKSS ++R  K  FRE+   T+  D   + +  +     LQ+ DT G  
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++ +    K    +L+Y  T  +S   +R   ++I +    A+E  ++PIMLVGNK 
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIED---AAHE--TVPIMLVGNKA 143
Query: 127 DETENREVSAAE---------GEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176
           D    R+ +A E         GE  A  +G  F ETSAK   N+ E    L    K R 
Sbjct: 144 D---IRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT--IEDTYRQVISCNKNICTLQITDTTGS 65
           +++++ G   VGK+S + R+   +F  +++ T  I+   + V   +K I  LQI DT G 
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRI-KLQIWDTAGQ 81
Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            ++  +          F+L+Y   +++S   ++  W    +T    N      ++LVGNK
Sbjct: 82  ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNA----QVILVGNK 136
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
           CD  + R V A +G   A   G  F E SAK N NVK++F  L+++
Sbjct: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDV 182

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 10/162 (6%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE---DTYRQVISCNKNICTLQITDTTG 64
           ++V++ G  GVGKS+L   F  G  +  +   +E   DTY + I  +K   TL + D   
Sbjct: 3   FKVMLVGESGVGKSTLAGTF--GGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60
Query: 65  SHQFPA-MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
                  +Q   +  G AF++V+S T R+S  +   + E +   + G      +P++LVG
Sbjct: 61  QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSK---VPETLLRLRAGRPH-HDLPVILVG 116
Query: 124 NKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           NK D   +REVS  EG   A    C  +ETSA  +HN +ELF
Sbjct: 117 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 16/165 (9%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTF------RESYIPTIEDTYRQVISCNKNICTLQITD 61
           ++V++ G  GVGKS+L      GTF          +   EDTY + I  +K   TL + D
Sbjct: 13  FKVMLLGESGVGKSTLA-----GTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYD 67
Query: 62  TTGSHQFPA-MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
                     +Q   +  G AF++V+S T R+S  +   + E +   + G      +P++
Sbjct: 68  IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSK---VPETLLRLRAGRPH-HDLPVI 123
Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           LVGNK D   +REVS  EG   A    C  +ETSA  +HN +ELF
Sbjct: 124 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G  GVGKS L+LRF   T+   YI TI   ++ + +  +     LQI DT G  
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F  +        H  I+VY  T ++S   ++ +W  ++E    A   +++  +LVGNKC
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MW--LQEIDRYAT--STVLKLLVGNKC 123
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D  + R V     +  A      F+ETSA  + NV++ F
Sbjct: 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 12/163 (7%)
Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
           + + G  G GKS+L ++F+   F   Y P +EDTY    + +     L++ DT       
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR 83
Query: 70  AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVI----RETKGGANELASIPIMLVGNK 125
             +R  ++  HAF++VYS  SRQS +      E++    +ET+       SIP +L+GNK
Sbjct: 84  NCERY-LNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ------RSIPALLLGNK 136
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTN-HNVKELFAE 167
            D  + R+V+ AEG A A  +GC F E SA  +  +V+ +F E
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHE 179

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G  GVGKS L+LRF   T+   YI TI   ++ + +  +     LQI DT G  
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F  +        H  I+VY  T ++S   ++ +W  ++E    A   +++  +LVGNKC
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MW--LQEIDRYAT--STVLKLLVGNKC 123
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D  + R V     +  A      F+ETSA  + NV++ F
Sbjct: 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G  GVGKS L+LRF   T+   YI TI   ++ + +  +     LQI DT G  
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F  +        H  I+VY  T ++S   ++ +W  ++E    A   +++  +LVGNKC
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MW--LQEIDRYAT--STVLKLLVGNKC 136
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D  + R V     +  A      F+ETSA  + NV++ F
Sbjct: 137 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 175

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 1   MPEQSNDY----RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VI------ 48
           +P  S DY    +++  G  GVGK++ + R+    F   +I T+   +R+  V+      
Sbjct: 15  VPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGP 74
Query: 49  --SCNKNI-CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIR 105
             S  K     LQ+ DT G  +F ++          F+L++  TS+QS   +R     ++
Sbjct: 75  NGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 134
Query: 106 ETKGGANELASIP-IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164
                AN     P I+L+GNK D  + REV+  +    A  +G  + ETSA T  NV++ 
Sbjct: 135 -----ANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA 189
Query: 165 FAELLNL 171
              LL+L
Sbjct: 190 VETLLDL 196

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++ F K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 68  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 122
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG   A   G   +ME SAKT   V+E+F
Sbjct: 123 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++ F K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 121
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG   A   G   +ME SAKT   V+E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++ F K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 123
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG   A   G   +ME SAKT   V+E+F
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++ F K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 123
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG   A   G   +ME SAKT   V+E+F
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++ F K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 123
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG   A   G   +ME SAKT   V+E+F
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++ F K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 124
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG   A   G   +ME SAKT   V+E+F
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++ F K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 70
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 71  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 125
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG   A   G   +ME SAKT   V+E+F
Sbjct: 126 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
           Q    + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT 
Sbjct: 10  QGQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 69
Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
           G   +  ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG
Sbjct: 70  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVG 124
Query: 124 NKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            K D  ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 125 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 183

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
           Q    + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT 
Sbjct: 27  QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 86
Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
           G   +  ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG
Sbjct: 87  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVG 141
Query: 124 NKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            K D  ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 22/202 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + V  G G VGK+ +++ +    F   YIPT+ D +   ++ +  I  L + DT G   +
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDY 70
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS      F+L +S  S+ S E +   W  + E +  A    ++PI+LVG K D 
Sbjct: 71  SRLRPLSYRGADIFVLAFSLISKASYENVLKKW--MPELRRFA---PNVPIVLVGTKLDL 125
Query: 129 TENRE--------VSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAELLNLEKNRNISL 179
            +++         +++ +GE   K  G   ++E S+KT  NVK +F   +       + L
Sbjct: 126 RDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI------KVVL 179
Query: 180 QLEKKGQLKGTRK--LKEKCSV 199
           Q  ++ ++   RK   +  CS+
Sbjct: 180 QPPRRKEVPRRRKNHRRSGCSI 201

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 65  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 65  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 13/170 (7%)
Query: 2   PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQ 58
           P++  D+  ++V+ G   VGK+ +V RF  G F E    TI  D   + +        LQ
Sbjct: 22  PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81
Query: 59  ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW-EVIRETKGGANELASI 117
           I DT G  +F  + +      +  IL Y  T R S   + P W E +R+  G     ++I
Sbjct: 82  IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAG-----SNI 135
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWG--CHFMETSAKTNHNVKELF 165
             +L+GNK D +E REVS AE ++ A+ +   C  +ETSAK + NV+E F
Sbjct: 136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCA-IETSAKDSSNVEEAF 184

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 65  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 65  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
            ++++            ++  +G A AK  G   ++E SA T   +K +F E
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 65  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 65  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 12  KCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 71
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 72  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 126
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 127 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 180

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 18/177 (10%)
Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
           Q    + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT 
Sbjct: 27  QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 86
Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
           G   +  ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG
Sbjct: 87  GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVG 141
Query: 124 NKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
            K D  ++++            ++  +G A AK  G   ++E SA T   +K +F E
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 24  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 83
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 84  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 138
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
            ++++            ++  +G A AK  G   ++E SA T   +K +F E
Sbjct: 139 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 190

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +   S PI+LVG K D 
Sbjct: 65  DRLRPLSYPQTDVFLICFSLVSPASYENVRAKW--FPEVR---HHCPSTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK +    ++E SA T   +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 173

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 7/165 (4%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
           +++V+ G  GVGKS+L+ RF +  F      TI  E   + +   N  I   QI DT G 
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            ++ A+           +LVY  T + S E +   W  ++E +  A+  ++I I+LVGNK
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEK-W--LKELRDNAD--SNIVILLVGNK 122
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
            D    R ++  +    AK     F+ETSA    NV+  F +LLN
Sbjct: 123 SDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLN 167

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 65  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
            ++++            ++  +G A AK  G   ++E SA T   +K +F E
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 4/169 (2%)
Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQI 59
           M  +S+ ++V++ G GGVGKSSL+ R+V   F      TI   +  + +  + +  T+QI
Sbjct: 1   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60
Query: 60  TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI 119
            DT G  +F +++          +L +S    QS + L   W+          E  S P 
Sbjct: 61  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPF 119
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
           +++GNK D +E R+VS  E +A  +  G + + ETSAK   NV   F E
Sbjct: 120 VILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 65  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
            ++++            ++  +G A AK  G   ++E SA T   +K +F E
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 67
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 68  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 122
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 123 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 176

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 39/227 (17%)
Query: 1   MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNI-- 54
           M +   DY  +++  G  GVGK++ + R+    F   +I T+   +R+  V+   +    
Sbjct: 3   MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADG 62
Query: 55  -------CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRET 107
                    LQ+ DT G  +F ++          F+L++  TS+QS   +R     ++  
Sbjct: 63  ASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ-- 120
Query: 108 KGGANELASIP-IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166
              AN     P I+L+GNK D  + REV+  +    A+ +G  + ETSA T  NV++   
Sbjct: 121 ---ANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVE 177
Query: 167 ELLNLEKNRNISLQLEK---------------KGQLKGTRKLKEKCS 198
            LL+L     I  ++EK                G+L G +  ++KC+
Sbjct: 178 TLLDL-----IMKRMEKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCA 219

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 4/169 (2%)
Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQI 59
           M  +S+ ++V++ G GGVGKSSL+ R+V   F      TI   +  + +  + +  T+QI
Sbjct: 3   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 62
Query: 60  TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI 119
            DT G  +F +++          +L +S    QS + L   W+          E  S P 
Sbjct: 63  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPF 121
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
           +++GNK D +E R+VS  E +A  +  G + + ETSAK   NV   F E
Sbjct: 122 VILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 169

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 1   MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNI-- 54
           M +   DY  +++  G  GVGK++ + R+    F   +I T+   +R+  V+   +    
Sbjct: 3   MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADG 62
Query: 55  -------CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRET 107
                    LQ+ DT G  +F ++          F+L++  TS+QS   +R     ++  
Sbjct: 63  ASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ-- 120
Query: 108 KGGANELASIP-IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA 166
              AN     P I+L+GNK D  + REV+  +    A+ +G  + ETSA T  NV++   
Sbjct: 121 ---ANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVE 177
Query: 167 ELLNLEKNR 175
            LL+L   R
Sbjct: 178 TLLDLIMKR 186

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++ F K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFXPNVPIILVGNKKDL 141
Query: 126 -CDETENRE--------VSAAEGEAEA-KMWGCHFMETSAKTNHNVKELF 165
             DE   RE        V + EG   A ++    ++E SAKT   V+E+F
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 65
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +     PI+LVG K D 
Sbjct: 66  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPHTPILLVGTKLDL 120
Query: 129 TENRE------------VSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A A+  G   ++E SA T   +K +F E +
Sbjct: 121 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 4/166 (2%)
Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDT 62
           +S+ +++++ G GGVGKSSL+ R+V   F      TI   +  + +  + +  T+QI DT
Sbjct: 8   KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 67
Query: 63  TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV 122
            G  +F +++          +L +S    QS + L   W+          E  S P +++
Sbjct: 68  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVIL 126
Query: 123 GNKCDETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
           GNK D  E R+VS  E +A  K  G + + ETSAK + NV   F E
Sbjct: 127 GNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEE 171

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 65
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +     PI+LVG K D 
Sbjct: 66  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPHTPILLVGTKLDL 120
Query: 129 TENRE------------VSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A A+  G   ++E SA T   +K +F E +
Sbjct: 121 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++ F K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 141
Query: 126 -CDETENRE--------VSAAEGEAEA-KMWGCHFMETSAKTNHNVKELF 165
             DE   RE        V + EG   A ++    ++E SAKT   V+E+F
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 18/172 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +     PI+LVG K D 
Sbjct: 65  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPHTPILLVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAE 167
            ++++            ++  +G A A+  G   ++E SA T   +K +F E
Sbjct: 120 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 20/171 (11%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + V+ G G VGK+SLV+ +    +   YIPT  D +  V+S +     LQ+ DT G  +F
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ L  +    F+L +S  S  S + +   W  + E +         PI+LVG + D 
Sbjct: 82  DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKW--VPEIRC---HCPKAPIILVGTQSDL 136
Query: 129 TENREV--------------SAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
            E+ +V               AA+  AE ++    ++E SA T  N+KE+F
Sbjct: 137 REDVKVLIELDKCKEKPVPEEAAKLLAE-EIKAASYIECSALTQKNLKEVF 186

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++VV G G  GK+ L++ F K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS       ++ +S  S  SLE +   W  + E K   +   ++PI+LV NK D 
Sbjct: 87  DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKW--VPEVK---HFCPNVPIILVANKKDL 141
Query: 128 -----------ETENREVSAAEGEAEA-KMWGCHFMETSAKTNHNVKELF 165
                        +   V   +G A A ++    ++E SAKT   V+E+F
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
           Q    + VV G G VGK+ L++ +        YIPT+ D Y   +  +     L + DT 
Sbjct: 27  QGQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 86
Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
           G   +  ++ LS  +   F++ +S  S  S E +R  W    E +   +   + PI+LVG
Sbjct: 87  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVG 141
Query: 124 NKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
            K D  ++++            ++  +G A AK  G   ++E SA T   +K +F E
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G    GK+ L++ F K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 68  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 122
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG   A   G   +ME SAKT   V+E+F
Sbjct: 123 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++   K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 121
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG   A   G   +ME SAKT   V+E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++   K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 119
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG   A   G   +ME SAKT   V+E+F
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++ +V G+ G GKS L+ +F++  F++    TI   +  +V++       LQI DT G  
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++ R         +LVY  TSR++   L   W     T    N    I ++L GNK 
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPN----IVVILCGNKK 140
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           D    REV+  E    A+     F+ETSA T  NV+E F
Sbjct: 141 DLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++   K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 121
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG   A   G   +ME SAKT   V+E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++   K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 119
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG   A   G   +ME SAKT   V+E+F
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++   K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 121
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG   A   G   +ME SAKT   V+E+F
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 4/161 (2%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ 67
           +V++ G GGVGKSSL+ R+V   F      TI   +  + +  +    TLQI DT G  +
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F +++          +L +S   RQS E L   W+          +    P +++GNK D
Sbjct: 69  FKSLRTPFYRGADCCLLTFSVDDRQSFENLGN-WQKEFIYYADVKDPEHFPFVVLGNKVD 127
Query: 128 ETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
           + E+R+V+  E +      G + ++ETSAK + NV   F E
Sbjct: 128 K-EDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEE 167

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S   +R  W    E +   +   + PI+LVG K D 
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKW--YPEVR---HHCPNTPIILVGTKLDL 271
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S   +R  W    E +   +   + PI+LVG K D 
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKW--YPEVR---HHCPNTPIILVGTKLDL 271
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++ +V G  G GKS L+ +F++  F++    TI   +  ++I+       LQI DT G  
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS--IPIMLVGN 124
           +F ++ R         +LVY  TSR++   L   W         A  LAS  I I+L GN
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLT------DARMLASQNIVIILCGN 123
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
           K D   +REV+  E    A+     F+ETSA T  NV+E F +
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 22/172 (12%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++   KG F E Y+PT+ + Y   +  +     L + DT G   +
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKC 126
             ++ LS    +  ++ +S     SLE ++  W  EV+   +G       +PI+LVG K 
Sbjct: 72  DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQG-------VPIILVGCKV 124
Query: 127 D------------ETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELF 165
           D            +   + V++ EG++ A   G   + E SAKT + V+E+F
Sbjct: 125 DLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S   +R  W    E +   +   + PI+LVG K D 
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKW--YPEVR---HHCPNTPIILVGTKLDL 271
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 7   DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNI-------- 54
           DY  +++  G  GVGK++ + R+    F   +I T+   +R+  V+   +          
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 55  -CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANE 113
              LQ+ DT G  +F ++          F+L +  TS+QS   +R  W     ++  AN 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WX----SQLQANA 123
Query: 114 LASIP-IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE 172
               P I+L+GNK D  + REV+  +    A+ +G  + ETSA T  NV++    LL+L 
Sbjct: 124 YCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
Query: 173 KNR 175
             R
Sbjct: 184 XKR 186

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 7   DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNI-------- 54
           DY  +++  G  GVGK++ + R+    F   +I T+   +R+  V+   +          
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 55  -CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANE 113
              LQ+ DT G  +F ++          F+L +  TS+QS   +R  W     ++  AN 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WX----SQLQANA 123
Query: 114 LASIP-IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLE 172
               P I+L+GNK D  + REV+  +    A+ +G  + ETSA T  NV++    LL+L 
Sbjct: 124 YCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
Query: 173 KNR 175
             R
Sbjct: 184 XKR 186

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++   K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 124
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V   EG   A   G   +ME SAKT   V+E+F
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G    GK+ L++ F K  F   Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
              + LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 67  DRARPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 121
Query: 126 -CDETENRE--------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELF 165
             DE   RE        V  AEG   A   G   +ME SAKT   V+E+F
Sbjct: 122 RNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 68
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +    ++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 69  DRLRPLSYPQTDVSLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 123
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 124 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 177

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G   VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 12  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDY 71
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +   F++ +S  S  S E +R  W    E +   +   S PI+LVG K D 
Sbjct: 72  DRLRPLSYPQTDVFLICFSLVSPASYENVRAKW--FPEVR---HHCPSTPIILVGTKLDL 126
Query: 129 TENRE------------VSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK +    ++E SA T   +K +F E +
Sbjct: 127 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 180

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +    ++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 67  DRLRPLSYPQTDVSLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 121
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +    ++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 65  DRLRPLSYPQTDVSLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 5   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
           S   + VV G   VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G
Sbjct: 7   SQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 66
Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
              +  ++ LS  +   F++ +S  S  S E +R  W    E +   +   S PI+LVG 
Sbjct: 67  QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKW--FPEVR---HHCPSTPIILVGT 121
Query: 125 KCDETENRE------------VSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
           K D  ++++            ++  +G A AK +    ++E SA T   +K +F E +
Sbjct: 122 KLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 179

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +    ++ +S  S  S E +R  W    E +   +   + PI+LVG K D 
Sbjct: 65  DRLRPLSYPQTDVSLICFSLVSPASFENVRAKW--YPEVR---HHCPNTPIILVGTKLDL 119
Query: 129 TENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
            ++++            ++  +G A AK  G   ++E SA T   +K +F E +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 8/172 (4%)
Query: 1   MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTL 57
           +P  S DY  +VV+ G  GVGKS+L+ RF +  F      TI   +  + I  +      
Sbjct: 12  VPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 71
Query: 58  QITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
           QI DT G  ++ A+           +LVY      + E +   W  ++E +  A+  ++I
Sbjct: 72  QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHAD--SNI 126
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
            IMLVGNK D    R V   E  A A+  G  F+ETSA  + NV+  F  +L
Sbjct: 127 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 178

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F E Y+PT+ D Y   ++       L + DT G   +
Sbjct: 20  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 79
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS      F++ +S  +  S + ++  W  + E K  A    ++P +L+G + D 
Sbjct: 80  DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW--VPELKEYA---PNVPFLLIGTQIDL 134
Query: 128 -----------ETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAELL 169
                      + + + +   +G+  AK  G C ++E SA T   +K +F E +
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 188

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 5/167 (2%)
Query: 6   NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY--RQVISCNKNICTLQITDTT 63
           N  +V++ G  GVGK+SL+ R+V   + + Y  TI   +  ++V      + T+Q+ DT 
Sbjct: 7   NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTA 66
Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
           G  +F ++           +LVY  T+  S E ++  W          N   + P +++G
Sbjct: 67  GQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILG 125
Query: 124 NKCDETENREVSAAEGEAE-AKMWG-CHFMETSAKTNHNVKELFAEL 168
           NK D  E++++ + +   E AK  G      TSAK   NV   F E+
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++ +V G  G GKS L+ +F++  F++    TI   +  ++I+       LQI DT G  
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS--IPIMLVGN 124
           +F ++ R         +LVY  TSR++   L   W         A  LAS  I I+L GN
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLT------DARMLASQNIVIILCGN 124
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
           K D   +REV+  E    A+     F+ETSA T  +V+E F +
Sbjct: 125 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQ 167

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQF 68
           +++ G  GVGKS L+LRF   T+ ESYI TI   ++ + I  +     LQI DT G  +F
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             +        H  I+VY  T ++S   ++  W  ++E    A+E  ++  +LVGNKCD 
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-W--LQEIDRYASE--NVNKLLVGNKCDL 115
Query: 129 T 129
           T
Sbjct: 116 T 116

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G G  GK+ L++   K  F E Y+PT+ + Y   I  +     L + DT G   +
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK--- 125
             ++ LS       ++ +S  S  SLE +   W     T    +   ++PI+LVGNK   
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-----TPEVKHFCPNVPIILVGNKKDL 121
Query: 126 -CDETENRE--------VSAAEGEAEA-KMWGCHFMETSAKTNHNVKELF 165
             DE   RE        V + EG   A ++    ++E SAKT   V+E+F
Sbjct: 122 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++ +V G  G GKS L+ +F++  F++    TI   +  ++I+       LQI DT G  
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS--IPIMLVGN 124
           +F ++ R         +LVY  TSR++   L   W         A  LAS  I I+L GN
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLT------DARMLASQNIVIILCGN 121
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
           K D   +REV+  E    A+     F+ETSA T  +V+E F +
Sbjct: 122 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQ 164

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 22/181 (12%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
           P      +VV+ G GG GK+SL++ F  G F ESY PT+ + Y   +        L I D
Sbjct: 29  PPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWD 88
Query: 62  TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPI 119
           T G   +  ++ L        +L +  TS  S + +   W  EV    K        +PI
Sbjct: 89  TAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-------KVPI 141
Query: 120 MLVGNKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFA 166
           ++VG K D  +++             V+   G+  A+  G   ++E SA+ + NV  +F 
Sbjct: 142 IVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQ 201
Query: 167 E 167
           E
Sbjct: 202 E 202

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++VV G G VGK+ L+L F KG    +Y+PT+ + +  V+        L + DT G  ++
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 84
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS +     +L ++  +R S + +   WE   E K   + + +   +LVG K D 
Sbjct: 85  DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWE--PEIK---HYIDTAKTVLVGLKVDL 139
Query: 128 -ETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELF 165
            +  + +V+  EG+   +  GC  ++E S+     + E+F
Sbjct: 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++VV G G VGK+ L+L F KG    +Y+PT+ + +  V+        L + DT G  ++
Sbjct: 24  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 83
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS +     +L ++  +R S + +   WE   E K   + + +   +LVG K D 
Sbjct: 84  DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWE--PEIK---HYIDTAKTVLVGLKVDL 138
Query: 128 -ETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELF 165
            +  + +V+  EG+   +  GC  ++E S+     + E+F
Sbjct: 139 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 13/174 (7%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISCNKNICTLQIT 60
           P +S  ++++V G   VGK+ L  RF  G F +    TI   +R+  +  +     +Q+ 
Sbjct: 24  PARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 83
Query: 61  DTTGSHQF-PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGG--ANELASI 117
           DT G  +F  +M +      HA + VY  T+  S   L P W  I E K    AN+   I
Sbjct: 84  DTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSL-PAW--IEECKQHLLAND---I 137
Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT---NHNVKELFAEL 168
           P +LVGNKCD     +V     +  A        ETSAK    N +V+ +F  L
Sbjct: 138 PRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTL 191

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 12/175 (6%)
Query: 1   MPEQSNDY----RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNI 54
           +P  S DY    +VV+ G  GVGK++L+ RF +  F      TI  E + R V+     +
Sbjct: 15  VPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAV 74
Query: 55  CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANEL 114
              QI DT G  ++ A+           +LV+  T  Q+   +   W  ++E    A   
Sbjct: 75  KA-QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER-W--LKELYDHAE-- 128
Query: 115 ASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           A+I +MLVGNK D ++ REV   E    A+  G  F+ETSA  + NV+  F  +L
Sbjct: 129 ATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL 183

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 85/169 (50%), Gaps = 13/169 (7%)
Query: 3   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITD 61
           E    +++V+ G GG GK++ V R + G F + Y+PT+  + +  V   N+      + D
Sbjct: 6   EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWD 65
Query: 62  TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPI 119
           T G  +F  ++     +    I+++  TSR + + + P W  +++R  +       +IPI
Sbjct: 66  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPI 117
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           +L GNK D  ++R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 118 VLCGNKVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++VV+ G  GVGKS+L+ RF +  F      TI   +  + I  +      QI DT G  
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ A+           +LVY      + E +   W  ++E +  A+  ++I IMLVGNK 
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHAD--SNIVIMLVGNKS 144
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    R V   E  A A+  G  F+ETSA  + NV+  F  +L
Sbjct: 145 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G GG GK++ V R + G F + Y+PT+  + +  V   N+      + DT G  
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           +F  ++     +    I+++  TSR + + + P W  +++R  +       +IPI+L GN
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 122
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           K D  ++R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 123 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++ ++ G  GVGKS L+ +F +  F      TI   +  ++I  +     LQI DT G  
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F A+ R         ++VY  T R +   L   W          N +    I+L+GNK 
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLTNPNTV----IILIGNKA 130
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
           D    R+V+  E +  A+  G  F+E SAKT  NV++ F E
Sbjct: 131 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE 171

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++VV+ G  GVGKS+L+ RF +  F      TI   +  + I  +      QI DT G  
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ A+           +LVY      + E +   W  ++E +  A+  ++I IMLVGNK 
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHAD--SNIVIMLVGNKS 123
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    R V   E  A A+  G  F+ETSA  + NV+  F  +L
Sbjct: 124 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 166

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++ ++ G  GVGKS L+ +F +  F      TI   +  ++I  +     LQI DT G  
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F A+ R         ++VY  T R +   L   W          N +    I+L+GNK 
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLTNPNTV----IILIGNKA 145
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
           D    R+V+  E +  A+  G  F+E SAKT  NV++ F E
Sbjct: 146 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE 186

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++VV+ G  GVGKS+L+ RF +  F      TI   +  + I  +      QI DT G  
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ A+           +LVY      + E +   W  ++E +  A+  ++I IMLVGNK 
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHAD--SNIVIMLVGNKS 144
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    R V   E  A A+  G  F+ETSA  + NV+  F  +L
Sbjct: 145 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
           P  S   + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + D
Sbjct: 2   PLGSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 61
Query: 62  TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
           T G   +  ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +L
Sbjct: 62  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLL 116
Query: 122 VGNKCD------------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAEL 168
           VG + D            + + + ++    E  A+ +    ++E SA T   +K +F E 
Sbjct: 117 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 176
Query: 169 L 169
           +
Sbjct: 177 I 177

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSHQ 67
           +V++ G  GVGK+SL+ ++V   F   Y  TI  D   + +  +  + T+QI DT G  +
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F ++           +LV+  T+  + + L   W      +    +  + P +++GNK D
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 128 ETENREVSAAEGEAEAKMWGCH------FMETSAKTNHNVKELF 165
             ENR+V+    +A    W C+      + ETSAK   NV++ F
Sbjct: 129 -LENRQVATKRAQA----W-CYSKNNIPYFETSAKEAINVEQAF 166

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSHQ 67
           +V++ G  GVGK+SL+ ++V   F   Y  TI  D   + +  +  + T+QI DT G  +
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F ++           +LV+  T+  + + L   W      +    +  + P +++GNK D
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 128 ETENREVSAAEGEAEAKMWGCH------FMETSAKTNHNVKELF 165
             ENR+V+    +A    W C+      + ETSAK   NV++ F
Sbjct: 129 -LENRQVATKRAQA----W-CYSKNNIPYFETSAKEAINVEQAF 166

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQ 58
           M + +  ++VV+ G  GVGK++L+ RF +  F      TI  E + R V+     +   Q
Sbjct: 4   MEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA-Q 62
Query: 59  ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP 118
           I DT G  ++ A+           +LV+  T  Q+   +   W  ++E    A   A+I 
Sbjct: 63  IWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER-W--LKELYDHAE--ATIV 117
Query: 119 IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV--------KELFAEL 168
           +MLVGNK D ++ REV   E    A+  G  F+ETSA  + NV        KE+FA++
Sbjct: 118 VMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 175

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSHQ 67
           +V++ G  GVGK+SL+ ++V   F   Y  TI  D   + +  +  + T+QI DT G  +
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F ++           +LV+  T+  + + L   W      +    +  + P +++GNK D
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 128 ETENREVSAAEGEAEAKMWGCH------FMETSAKTNHNVKELF 165
             ENR+V+    +A    W C+      + ETSAK   NV++ F
Sbjct: 129 -FENRQVATKRAQA----W-CYSKNNIPYFETSAKEAINVEQAF 166

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++VV+ G  GVGKS+L+ RF +  F      TI   +  + I  +      QI DT G  
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++  +           +LVY      + E +   W  ++E +  A+  ++I IMLVGNK 
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHAD--SNIVIMLVGNKS 120
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    R V   E  A A+     F+ETSA  + NV+E F  +L
Sbjct: 121 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 79/172 (45%), Gaps = 13/172 (7%)
Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISCNKNICTLQITDT 62
           +S  ++++V G   VGK+ L  RF  G F +    TI   +R+  +  +     +Q+ DT
Sbjct: 17  RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT 76
Query: 63  TGSHQF-PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGG--ANELASIPI 119
            G  +F  +M +      HA + VY  T+  S   L P W  I E K    AN+   IP 
Sbjct: 77  AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAW--IEECKQHLLAND---IPR 130
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT---NHNVKELFAEL 168
           +LVGNKCD     +V     +  A        ETSAK    N +V+ +F  L
Sbjct: 131 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSHQ 67
           +V++ G  GVGK+SL+ ++V   F   Y  TI  D   + +  +  + T+QI DT G  +
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F ++           +LV+  T+  + + L   W      +    +  + P +++GNK D
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 128 ETENREVSAAEGEAEAKMWGCH------FMETSAKTNHNVKELF 165
             ENR+V+    +A    W C+      + ETSAK   NV++ F
Sbjct: 129 -LENRQVATKRAQA----W-CYSKNNIPYFETSAKEAINVEQAF 166

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 67
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 68  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 122
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 123 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 74
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 75  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 129
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 130 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 66
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 67  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 121
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 122 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 12  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 71
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 72  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 126
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 127 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 66
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 67  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 121
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 122 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 65
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 66  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 120
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 121 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 67
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 68  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 122
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 123 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 12  KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 71
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 72  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 126
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 127 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDY 68
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 69  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 123
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 124 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++VV+ G  GVGKS+L+ RF +  F      TI   +  + I  +      QI DT G  
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ A+           +LVY      + E +   W  ++E +  A+  ++I I LVGNK 
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHAD--SNIVIXLVGNKS 126
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    R V   E  A A+  G  F+ETSA  + NV+  F  +L
Sbjct: 127 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 169

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 3   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITD 61
           E    +++V+ G GG GK++ V R + G F + Y+ T+  + +  V   N+      + D
Sbjct: 6   EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWD 65
Query: 62  TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPI 119
           T G  +F  ++     +    I+++  TSR + + + P W  +++R  +       +IPI
Sbjct: 66  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPI 117
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           +L GNK D  ++R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 118 VLCGNKVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSH 66
           ++VV+ G  GVGKS+L+ RF +  F      TI   +  + I  +      QI DT G  
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ A+           +LVY      + E +   W  ++E +  A+  ++I I LVGNK 
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHAD--SNIVIXLVGNKS 120
Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    R V   E  A A+  G  F+ETSA  + NV+  F  +L
Sbjct: 121 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 163

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 17/184 (9%)
Query: 1   MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ---VISCNK--- 52
           M +   DY  + +  G  GVGK+S++ ++  G F   +I T+   +R+   V   N    
Sbjct: 3   MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62
Query: 53  -----NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRET 107
                    LQ+ DT G  +F ++          F+L++  T+ QS   +R     ++  
Sbjct: 63  AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122
Query: 108 KGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE 167
               N      I+L GNK D  + R V   E    A+ +G  + ETSA    N+      
Sbjct: 123 AYSENP----DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEM 178
Query: 168 LLNL 171
           LL+L
Sbjct: 179 LLDL 182

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 37/193 (19%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66
Query: 69  PAMQRLSISK-------------------GHAFILVYSCTSRQSLEELRPIWEVIRETKG 109
             ++ LS  +                      F++ +S  S  S E +R  W    E + 
Sbjct: 67  DRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKW--YPEVR- 123
Query: 110 GANELASIPIMLVGNKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAK 156
             +   + PI+LVG K D  ++++            ++  +G A AK  G   ++E SA 
Sbjct: 124 --HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 181
Query: 157 TNHNVKELFAELL 169
           T   +K +F E +
Sbjct: 182 TQRGLKTVFDEAI 194

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G GG GK++ V R + G F + Y+ T+  + +  V   N+      + DT G  
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           +F  ++     +    I+++  TSR + + + P W  +++R  +       +IPI+L GN
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 122
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           K D  ++R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 123 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G GG GK++ V R + G F + Y+ T+  + +  V   N+      + DT G  
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           +F  ++     +    I+++  TSR + + + P W  +++R  +       +IPI+L GN
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 122
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           K D  ++R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 123 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 3   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITD 61
           E    +++V+ G GG GK++ V R + G F + Y+ T+  + +  V   N+      + D
Sbjct: 2   EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWD 61
Query: 62  TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPI 119
           T G  +F  ++     +    I+++  TSR + + + P W  +++R  +       +IPI
Sbjct: 62  TAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPI 113
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           +L GNK D  ++R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 114 VLCGNKVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 160

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G GG GK++ V R + G F + Y+ T+  + +  V   N+      + DT G  
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           +F  ++     +    I+++  TSR + + + P W  +++R  +       +IPI+L GN
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 122
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           K D  ++R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 123 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G GG GK++ V R + G F + Y+ T+  + +  V   N+      + DT G  
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           +F  ++     +    I+++  TSR + + + P W  +++R  +       +IPI+L GN
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 115
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           K D  ++R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 116 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 157

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G GG GK++ V R + G F + Y+ T+  + +  V   N+      + DT G  
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           +F  ++     +    I+++  TSR + + + P W  +++R  +       +IPI+L GN
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 127
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           K D  ++R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 128 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 169

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 3   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITD 61
           E    +++V+ G GG GK++ V R + G F + Y+ T+  + +  V   N+      + D
Sbjct: 8   EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWD 67
Query: 62  TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPI 119
           T G  +F  ++     +    I+++  TSR + + + P W  +++R  +       +IPI
Sbjct: 68  TAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPI 119
Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           +L GNK D  ++R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 120 VLCGNKVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 166

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   Y+P + D Y   +       TL + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 13/164 (7%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G GG GK++ V R + G F + Y+ T+  + +  V   N+      + DT G  
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           +F  ++     +    I+ +  TSR + + + P W  +++R  +       +IPI+L GN
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 122
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           K D  ++R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 123 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G GG GK++ V R + G F + Y+ T+  + +  V   N+      + DT G  
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           +F  ++     +    I+++  TSR + + + P W  +++R  +       +IPI+L GN
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 122
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           K D  ++R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 123 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +        Y+PT+ D Y   +       TL + DT G   +
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G GG GK++ V R + G F + Y+ T+  + +  V   N+      + DT G  
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           ++  ++     +    I+++  TSR + + + P W  +++R  +       +IPI+L GN
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 122
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           K D  ++R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 123 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 164

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 8/165 (4%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
           +++V+ G  GVGKS+L+ RF K  F      TI  E   R +    K I   QI DT G 
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRI-KAQIWDTAGQ 72
Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            ++ A+           ++VY  +   S E        +RE     N   ++ + L+GNK
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE-----NADDNVAVGLIGNK 127
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
            D    R V   E +  A+     F ETSA  + NV + F EL+N
Sbjct: 128 SDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELIN 172

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G   VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   +
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD- 127
             ++ LS  +   F++ +S  S  S E ++  W  + E     +     P +LVG + D 
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEI---THHCPKTPFLLVGTQIDL 119
Query: 128 -----------ETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
                      + + + ++    E  A+ +    ++E SA T   +K +F E +
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 13/164 (7%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G GG GK++ V R + G   + Y+ T+  + +  V   N+      + DT G  
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           +F  ++     +    I+++  TSR + + + P W  +++R  +       +IPI+L GN
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE-------NIPIVLCGN 127
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           K D  ++R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 128 KVD-IKDRKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWL 169

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G GG GK++ V R + G F + YI TI  + +      N       + DT G  
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           +F  ++          I+++  TSR + + + P W  +++R  +       +IPI+L GN
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCE-------NIPIVLCGN 117
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           K D  E R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 118 KVDVKE-RKVKAKTITFHRKK-NLQYYDISAKSNYNFEKPFLWL 159

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G GG GK++ V R + G F + YI TI  + +      N       + DT G  
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           +F  ++          I+++  TSR + + + P W  +++R  +       +IPI+L GN
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCE-------NIPIVLCGN 116
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           K D  E R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 117 KVDVKE-RKVKAKTITFHRKK-NLQYYDISAKSNYNFEKPFLWL 158

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 46/204 (22%)
Query: 3   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY------------------ 44
           E+ + Y+ V+ G   VGKSS+VLR  K TF E+   TI  ++                  
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 45  ------------------RQVISCNKNICTLQ--ITDTTGSHQFPAMQRLSISKGHAFIL 84
                              Q  + N+N+C ++  I DT G  ++ ++  L        I+
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
Query: 85  VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK 144
           V+  ++  +L+  +  W  + + K  +N +    I+LV NK D+ +  +V   E +  A+
Sbjct: 123 VFDISNSNTLDRAKT-W--VNQLKISSNYI----IILVANKIDKNK-FQVDILEVQKYAQ 174
Query: 145 MWGCHFMETSAKTNHNVKELFAEL 168
                F++TSAKT  N+K +F  L
Sbjct: 175 DNNLLFIQTSAKTGTNIKNIFYML 198

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNI-CTLQITDTTGSH 66
           ++VV G G  GK+SL   F + TF + Y  TI  D + + I+   N+  TLQI D  G  
Sbjct: 8   KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM-LVGNK 125
               M    I      +LVY  T+ QS E L   + V+++    + E  + P++ LVGNK
Sbjct: 68  IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKV---SEESETQPLVALVGNK 124
Query: 126 CDETENREVSAAEGE--AEAKMWGCHFMETSAKTNHNV----KELFAELLNLEKNR 175
            D    R +   +     +   +  HF+  SAKT  +V    +++ AE+L ++ N+
Sbjct: 125 IDLEHMRTIKPEKHLRFCQENGFSSHFV--SAKTGDSVFLCFQKVAAEILGIKLNK 178

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G GG GK++ V R + G F + YI TI  + +      N       + DT G  
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGN 124
           +F  ++          I+++  TSR + + + P W  +++R  +       +IPI+L GN
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCE-------NIPIVLCGN 124
Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           K D  E R+V A       K     + + SAK+N+N ++ F  L
Sbjct: 125 KVDVKE-RKVKAKTITFHRKK-NLQYYDISAKSNYNFEKPFLWL 166

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
           P Q+   ++VV G    GK++L+  F K  F E+Y+PT+ + Y      +     L + D
Sbjct: 18  PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 77
Query: 62  TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANEL-ASIPIM 120
           T+GS  +  ++ LS     A ++ +  +  ++L+       V+++ KG   E   +  ++
Sbjct: 78  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD------SVLKKWKGEIQEFCPNTKML 131
Query: 121 LVGNKCD---------ETENRE---VSAAEGEAEAKMWGCH-FMETSA-KTNHNVKELF 165
           LVG K D         E  N     VS  +G   AK  G   ++E SA ++ ++V+++F
Sbjct: 132 LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 190

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
           P Q+   ++VV G    GK++L+  F K  F E+Y+PT+ + Y      +     L + D
Sbjct: 23  PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 82
Query: 62  TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANEL-ASIPIM 120
           T+GS  +  ++ LS     A ++ +  +  ++L+       V+++ KG   E   +  ++
Sbjct: 83  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD------SVLKKWKGEIQEFCPNTKML 136
Query: 121 LVGNKCD---------ETENR---EVSAAEGEAEAKMWGCH-FMETSA-KTNHNVKELF 165
           LVG K D         E  N     VS  +G   AK  G   ++E SA ++ ++V+++F
Sbjct: 137 LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
           +++V+ G  GVGKS+L+ RF    F      TI  E   R +   NK I   QI DT G 
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKA-QIWDTAGL 69
Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            ++ A+           ++VY  +   S E        +RE     N   ++ + L+GNK
Sbjct: 70  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRE-----NADDNVAVGLIGNK 124
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
            D    R V   E +  A      F ETSA  + NV + F EL+
Sbjct: 125 SDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELI 168

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 21/172 (12%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++VV G    GK++L+  F K  F E+Y+PT+ + Y      +     L + DT+GS  +
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELA-SIPIMLVGNKCD 127
             ++ LS     A ++ +  +  ++L+       V+++ KG   E   +  ++LVG K D
Sbjct: 69  DNVRPLSYPDSDAVLICFDISRPETLD------SVLKKWKGEIQEFCPNTKMLLVGCKSD 122
Query: 128 ---------ETENRE---VSAAEGEAEAKMWGCH-FMETSA-KTNHNVKELF 165
                    E  N     VS  +G   AK  G   ++E SA ++ ++V+++F
Sbjct: 123 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 7/170 (4%)
Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNK--NICTLQITDTTGS 65
           Y++ + G GGVGK++ + R + G F ++Y  T+      V   +   N+    + DT G 
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +   ++ +        IL +  TSR + + L   W  ++E +      A  PI++  NK
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-W--VKEFQAVVGNEA--PIVVCANK 126
Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
            D    +++S        K     + E SAKT HN    F  L  +   R
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGR 176

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G    GK++++    K  + E+Y+PT+ + Y   +   +    L + DT+GS  +
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKC 126
             ++ L  S   A +L +  +  ++++     W  E++       +   S  ++L+G K 
Sbjct: 89  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-------DYCPSTRVLLIGCKT 141
Query: 127 D------------ETENREVSAAEGEAEAKMWGCH-FMETSAKTNH-NVKELF--AELLN 170
           D              +   +S  +G A AK  G   ++E SA T+  ++  +F  A +L 
Sbjct: 142 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201
Query: 171 LEK 173
           L K
Sbjct: 202 LNK 204

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G    GK++++    K  + E+Y+PT+ + Y   +   +    L + DT+GS  +
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKC 126
             ++ L  S   A +L +  +  ++++     W  E++       +   S  ++L+G K 
Sbjct: 72  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-------DYCPSTRVLLIGCKT 124
Query: 127 D------------ETENREVSAAEGEAEAKMWGCH-FMETSAKTNH-NVKELF--AELLN 170
           D              +   +S  +G A AK  G   ++E SA T+  ++  +F  A +L 
Sbjct: 125 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 184
Query: 171 LEK 173
           L K
Sbjct: 185 LNK 187

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++V+ G    GK++++    K  + E+Y+PT+ + Y   +   +    L + DT+GS  +
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKC 126
             ++ L  S   A +L +  +  ++++     W  E++       +   S  ++L+G K 
Sbjct: 73  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-------DYCPSTRVLLIGCKT 125
Query: 127 D------------ETENREVSAAEGEAEAKMWGCH-FMETSAKTNH-NVKELF--AELLN 170
           D              +   +S  +G A AK  G   ++E SA T+  ++  +F  A +L 
Sbjct: 126 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 185
Query: 171 LEK 173
           L K
Sbjct: 186 LNK 188

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 19  GKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISK 78
           GK++ V     G F E  IPT+    R+V   N    T++I D  G  +F +M       
Sbjct: 34  GKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN---VTIKIWDIGGQPRFRSMWERYCRG 90
Query: 79  GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
            +A + +     R+ +E  R     + +      +L  IP++++GNK D
Sbjct: 91  VNAIVYMIDAADREKIEASRNELHNLLDKP----QLQGIPVLVLGNKRD 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	3e-95
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-90
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	5e-87
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-86
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-86
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-85
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-84
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	4e-84
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-82
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-82
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	4e-82
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-81
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	4e-81
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-81
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-80
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-80
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-80
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	5e-79
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-78
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-77
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	8e-73
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-69
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	5e-68
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-66
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	5e-45
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	6e-44
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	3e-43
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-43
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	4e-43
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	5e-43
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	6e-43
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	6e-43
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	6e-43
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	7e-43
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	8e-43
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	9e-43
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-42
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-42
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-42
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-42
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-42
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	3e-42
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	4e-42
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	4e-42
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	4e-42
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	4e-42
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	5e-42
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	7e-42
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	7e-42
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	9e-42
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-41
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-41
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-41
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-41
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-41
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-41
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	3e-41
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	3e-41
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	6e-41
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	6e-41
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-40
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-40
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	5e-40
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	9e-40
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-39
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-39
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-39
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	4e-38
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	5e-38
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	7e-38
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	6e-37
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	8e-37
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-36
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-36
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-35
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-34
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	5e-34
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-33
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	9e-33
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-32
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	8e-32
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	5e-31
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	8e-30
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-29
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	5e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	9e-09
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	3e-07
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-06
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-06
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	2e-05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	7e-05
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	1e-04
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	2e-04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	3e-04
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	4e-04
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	4e-04
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	5e-04
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	5e-04
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	6e-04
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	6e-04
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	7e-04

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  274 bits (704), Expect = 3e-95
 Identities = 145/202 (71%), Positives = 170/202 (84%), Gaps = 6/202 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR++YIPTIEDTYRQVISC+K++CTLQIT
Sbjct: 2   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQIT 61

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DTTGSHQFPAMQRLSISKGHAFILV+S TS+QSLEEL PI+++I + KG   +   IP+M
Sbjct: 62  DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---IPVM 118

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNKCDET+ REV   E +A A+ W C FMETSAK N+NVKELF ELL LE  RN+SL 
Sbjct: 119 LVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLN 177

Query: 181 LEKK--GQLKGTRKLKEKCSVM 200
           ++ K  G+ K T ++K KC++M
Sbjct: 178 IDGKRSGKQKRTDRVKGKCTLM 199

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  261 bits (669), Expect = 2e-90
 Identities = 141/175 (80%), Positives = 152/175 (86%), Gaps = 3/175 (1%)

Query: 5   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
           SNDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQITDTTG
Sbjct: 1   SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 60

Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
           SHQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG       IPIMLVGN
Sbjct: 61  SHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES---IPIMLVGN 117

Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISL 179
           KCDE+ +REV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SL
Sbjct: 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSL 172

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  253 bits (648), Expect = 5e-87
 Identities = 65/184 (35%), Positives = 100/184 (54%), Gaps = 5/184 (2%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MP QS   ++ + G   VGKSSL ++FV+G F +SY PTIE+T+ ++I+ N     LQ+ 
Sbjct: 1   MP-QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLV 59

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DT G  ++    +      + +ILVYS TS +S E ++ I   + +  G       IPIM
Sbjct: 60  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----IPIM 115

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNK D    R +S  EG+A A+ W   F+E+SAK N    ++F  ++   +  + +  
Sbjct: 116 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACS 175

Query: 181 LEKK 184
             K 
Sbjct: 176 QGKS 179

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  251 bits (643), Expect = 3e-86
 Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 8/196 (4%)

Query: 5   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
           S +Y++VV GA GVGKS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G
Sbjct: 2   STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61

Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
             ++ AM+   +  G  F+ V++  + +S E++    E I+  K   +    +P++LVGN
Sbjct: 62  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED----VPMVLVGN 117

Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184
           KCD   +R V   + +  A+ +G  F+ETSAKT   V + F  L+   +     +  + K
Sbjct: 118 KCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGK 176

Query: 185 GQLKGTRKLKEKCSVM 200
              K  +K K KC +M
Sbjct: 177 ---KKKKKSKTKCVIM 189

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  252 bits (645), Expect = 3e-86
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 7/196 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           ++V++ G+GGVGKS+L L+F+   F E Y PT  D+YR+ +  +     + I DT G   
Sbjct: 15  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 74

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           + A++      G  F+ V+S T  +S        E I   K   N    +P +LVGNK D
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 130

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKGQL 187
             + R+VS  E +  A+ W  +++ETSAKT  NV ++F +L+   + R +    EK G+ 
Sbjct: 131 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKK 190

Query: 188 KG---TRKLKEKCSVM 200
           K     ++++E+C ++
Sbjct: 191 KRKSLAKRIRERCCIL 206

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  247 bits (633), Expect = 6e-85
 Identities = 80/163 (49%), Positives = 110/163 (67%), Gaps = 4/163 (2%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y+VVV G+GGVGKS+L ++FV GTF E Y PTIED YR+ I  + +   L+I DT G+ 
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF +M+ L I  G  FILVYS  ++QS ++++P+ + I   K        +P++LVGNK 
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK----VPVILVGNKV 118

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    REVS++EG A A+ WGC FMETSAK+   V ELFAE++
Sbjct: 119 DLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  246 bits (630), Expect = 3e-84
 Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 4/175 (2%)

Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
           P  S  +++VV G GGVGKS+L ++F++  F   Y PTIED+Y ++ S +     L I D
Sbjct: 4   PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILD 63

Query: 62  TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
           T G  +F AM+   +  GH F+LV++   RQS  E+  ++  I   K   +     P++L
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD----FPVVL 119

Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176
           VGNK D    R+V  +E  A        + E SAK   NV E F +L+   +   
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  246 bits (630), Expect = 4e-84
 Identities = 62/200 (31%), Positives = 107/200 (53%), Gaps = 17/200 (8%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           MP      +VV+ G   VGK+SL  +FV+G F E Y PT+E+TY ++++  K+   L + 
Sbjct: 19  MP-LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLV 77

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DT G  ++  +    I   H ++LVYS TS  S + +  +++ + E  G       +P++
Sbjct: 78  DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR----VPVV 133

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNK D +  REV A EG+  A+ WG  FME+SA+ N   + +F +++          +
Sbjct: 134 LVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQ---------E 184

Query: 181 LEKKGQLKGTRKLKEKCSVM 200
           + +    + +   + +C +M
Sbjct: 185 IARV---ENSYGQERRCHLM 201

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  241 bits (617), Expect = 2e-82
 Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 4/171 (2%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           ++V++ G+GGVGKS+L L+F+   F E Y PT  D+YR+ +  +     + I DT G   
Sbjct: 19  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 78

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           + A++      G  F+ V+S T  +S        E I   K   N    +P +LVGNK D
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 134

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNIS 178
             + R+VS  E +  A+ W  +++ETSAKT  NV ++F +L+   + R + 
Sbjct: 135 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  240 bits (616), Expect = 2e-82
 Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 4/168 (2%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           ++V++ G+GGVGKS+L L+F+   F E Y PT  D+YR+ +  +     + I DT G   
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           + A++      G  F+ V+S T  +S        E I   K   N    +P +LVGNK D
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 120

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
             + R+VS  E +  A  W  +++ETSAKT  NV ++F +L+   + R
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  240 bits (614), Expect = 4e-82
 Identities = 70/165 (42%), Positives = 106/165 (64%), Gaps = 5/165 (3%)

Query: 6   NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGS 65
            +Y++VV G+GGVGKS+L ++FV+G F E Y PTIED+YR+ +  +   C L+I DT G+
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            QF AM+ L +  G  F LVYS T++ +  +L+ + E I   K   +    +P++LVGNK
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED----VPMILVGNK 117

Query: 126 CDETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELFAELL 169
           CD  + R V   +G+  A+ W  C F+E+SAK+  NV E+F +L+
Sbjct: 118 CDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  238 bits (610), Expect = 3e-81
 Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 5/175 (2%)

Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
            E    Y++VV G GGVGKS+L ++F +  F + Y PTIED+Y +    +     L + D
Sbjct: 13  SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLD 72

Query: 62  TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
           T G  +F AM+   +  G  F++VYS T + S E +    ++I   K   +     P++L
Sbjct: 73  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES----FPMIL 128

Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAELLNLEKNR 175
           V NK D    R+V+  +G+  A  +   ++ETSAK    NV + F +L+ + + +
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  237 bits (608), Expect = 4e-81
 Identities = 60/171 (35%), Positives = 86/171 (50%), Gaps = 6/171 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           YRVV+ G  GVGK+SL   F     R+ +    ED Y + ++ +    TL + DT  + +
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64

Query: 68  FP--AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
                 Q   +  G A+++VYS   R S E    +   +R T    +    +PI+LVGNK
Sbjct: 65  LDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH----VPIILVGNK 120

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176
            D    REVS  EG A A ++ C F+ETSA   HNV ELF  ++   + R 
Sbjct: 121 ADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR 171

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  237 bits (607), Expect = 5e-81
 Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 5/168 (2%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           Y+V++ GA GVGKS+L   F  G            TY + I  +    +L + D      
Sbjct: 3   YKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
              +    ++ G A+++VYS T + S E+   +   +R  +   +    +PI+LVGNK D
Sbjct: 62  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD----VPIILVGNKSD 117

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
              +REVS  EG A A ++ C F+ETSA  +HNV+ LF  ++   + R
Sbjct: 118 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  237 bits (607), Expect = 1e-80
 Identities = 59/173 (34%), Positives = 96/173 (55%), Gaps = 5/173 (2%)

Query: 6   NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGS 65
            +Y++VV GAGGVGKS+L ++ ++  F + Y PTIED+YR+ +  +   C L I DT G 
Sbjct: 20  TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 79

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            ++ AM+   +  G  F+ V++  + +S  ++    E I+  K   +    +P++LVGNK
Sbjct: 80  EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDD----VPMVLVGNK 135

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNIS 178
           CD    R V   +    AK +G  F+ETSAKT   V++ F  L+   +   + 
Sbjct: 136 CDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMK 187

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  236 bits (604), Expect = 1e-80
 Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 5/163 (3%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV GAGGVGKS+L ++ ++  F +   PTIED+YR+ +  +   C L I DT G  
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ AM+   +  G  F+ V++  + +S E++    E I+  K   +    +P++LVGNK 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMVLVGNKS 118

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    R V + + +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 119 DLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  236 bits (605), Expect = 2e-80
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 4/168 (2%)

Query: 3   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDT 62
           +   +  + + G  G GKS+L ++F+   F   Y P +EDTY    + +     L++ DT
Sbjct: 17  QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDT 76

Query: 63  TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV 122
                    +R  ++  HAF++VYS  SRQS +      E++           SIP +L+
Sbjct: 77  ADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQR--SIPALLL 133

Query: 123 GNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTN-HNVKELFAELL 169
           GNK D  + R+V+ AEG A A  +GC F E SA  +  +V+ +F E +
Sbjct: 134 GNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  233 bits (597), Expect = 5e-79
 Identities = 63/176 (35%), Positives = 95/176 (53%), Gaps = 6/176 (3%)

Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
           +S + ++ +FG  GVGKS+LV+RF+   F   Y PT+E TYR   + +  + +++I DT 
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTA 84

Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
           G  +    +   +  G  F+LVY  T R S EE+ P+  ++ E K   N    + ++LVG
Sbjct: 85  G-QEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN----VTLILVG 139

Query: 124 NKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAELLNLEKNRNIS 178
           NK D   +R+VS  EGE  A    C F E SA T   N+ E+F EL    + R + 
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMV 195

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  230 bits (590), Expect = 4e-78
 Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 3   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITD 61
           ++   ++V++ G  GVGKS+L   F       ++ P   EDTY + I  +K   TL + D
Sbjct: 19  QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYD 78

Query: 62  TTGSHQFPAMQR-LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
                      R   +  G AF++V+S T R+S  ++      +R  +   +    +P++
Sbjct: 79  IWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD----LPVI 134

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNK D   +REVS  EG   A    C  +ETSA  +HN +ELF   +     R I L+
Sbjct: 135 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV-----RQIRLR 189

Query: 181 LEKK 184
             + 
Sbjct: 190 RGRN 193

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  228 bits (584), Expect = 2e-77
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 6/170 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-IEDTYRQVISCNKNICTLQITDTTGSH 66
           ++V++ G  GVGKS+L   F       ++     EDTY + I  +K   TL + D     
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62

Query: 67  QFPA-MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
                +Q   +  G AF++V+S T R+S  ++      +R  +   +    +P++LVGNK
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD----LPVILVGNK 118

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
            D   +REVS  EG   A    C  +ETSA  +HN +ELF   +   + R
Sbjct: 119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  218 bits (557), Expect = 8e-73
 Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 18/193 (9%)

Query: 1   MPEQSND--YRVVVFGAGGVGKSSLVLRF--VKGTFRESYIPTIEDTYRQVISCNKNICT 56
           +  +S +  YRVV+ G  GVGKS+L   F  V  +         EDTY + +  +    T
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 88

Query: 57  ---LQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANE 113
              L + +  G +++  +    +  G A+++VYS T R S E+   +   +R  +   + 
Sbjct: 89  IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED- 145

Query: 114 LASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK 173
              IPI+LVGNK D    REVS +EG A A ++ C F+ETSA   HNVKELF  ++    
Sbjct: 146 ---IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV---- 198

Query: 174 NRNISLQLEKKGQ 186
            R + L+ + K +
Sbjct: 199 -RQVRLRRDSKEK 210

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  208 bits (532), Expect = 2e-69
 Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 11/192 (5%)

Query: 6   NDYRVVVFGAGGVGKSSLVLRFVKGTFRESY--IPTIEDTYRQVISCNKNICT---LQIT 60
             YRVV+ G  GVGKS+L   F               EDTY + +  +    T   L + 
Sbjct: 5   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMW 64

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           +  G +++  +    +  G A+++VYS T R S E+   +   +R  +   +    IPI+
Sbjct: 65  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED----IPII 118

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
           LVGNK D    REVS +EG A A ++   F+ETSA   HNVKELF  ++   + R  S +
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178

Query: 181 LEKKGQLKGTRK 192
             ++      RK
Sbjct: 179 KNERRLAYQKRK 190

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  205 bits (523), Expect = 5e-68
 Identities = 36/184 (19%), Positives = 72/184 (39%), Gaps = 19/184 (10%)

Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
           Q  + +V + G    GKS+LV R++ GT+ +   P     +++ I  +     L I D  
Sbjct: 17  QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEG 75

Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
           G  +             A + V+S     S + +   +  +   +  +     +P++LVG
Sbjct: 76  GPPELQFAA-----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE----VPMVLVG 126

Query: 124 NKCD--ETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
            +        R +  +     +     C + ET A    NV+ +F ++      + + + 
Sbjct: 127 TQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVA-----QKV-VA 180

Query: 181 LEKK 184
           L KK
Sbjct: 181 LRKK 184

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  201 bits (513), Expect = 1e-66
 Identities = 39/182 (21%), Positives = 74/182 (40%), Gaps = 13/182 (7%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           + R+ V G    GKSSL+ RF+ G++ +    T  + Y++ +  +     + I +  G+ 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 65

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
                         A I V+S     S + +  +   +   +G      ++ ++   ++ 
Sbjct: 66  DAKFSG-----WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120

Query: 127 DETENREVSAAEGEA-EAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKG 185
             +  R V  A   A  A M  C + ET A    NV  +F E+      + + + L K+ 
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA-----QKV-VTLRKQQ 174

Query: 186 QL 187
           QL
Sbjct: 175 QL 176

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  147 bits (373), Expect = 5e-45
 Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 26/208 (12%)

Query: 5   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
           S   + V  G G VGK+ +++ +    F   YIPT+ D +   ++ +  I  L + DT G
Sbjct: 7   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAG 66

Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLV 122
              +  ++ LS      F+L +S  S+ S E +   W  E+ R           +PI+LV
Sbjct: 67  QEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN-------VPIVLV 119

Query: 123 GNKCDETENRE--------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELLN--L 171
           G K D  +++         +++ +GE   K  G   ++E S+KT  NVK +F   +   L
Sbjct: 120 GTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179

Query: 172 EKNRNISLQLEKKGQLKGTRKLKEKCSV 199
           +  R       K+   +     +  CS+
Sbjct: 180 QPPR------RKEVPRRRKNHRRSGCSI 201

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  143 bits (363), Expect = 6e-44
 Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 8/174 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
            ++VV G G  GK+SL   F + TF + Y  TI  +   R++        TLQI D  G 
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
                M    I      +LVY  T+ QS E L   + V+++    +       + LVGNK
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET--QPLVALVGNK 124

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF----AELLNLEKNR 175
            D    R +   +     +  G      SAKT  +V   F    AE+L ++ N+
Sbjct: 125 IDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  141 bits (359), Expect = 3e-43
 Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 8/164 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
           +++V  G   VGK+SL+ RF+  +F  +Y  TI  +   + +   ++ +  LQ+ DT G 
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQ 73

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +F ++    I      ++VY  T+  S  +    W  I + +        + IMLVGNK
Sbjct: 74  ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK-W--IDDVRTERGS--DVIIMLVGNK 128

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
            D ++ R+VS  EGE +AK     F+ETSAK  +NVK+LF  + 
Sbjct: 129 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  143 bits (362), Expect = 3e-43
 Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 11/172 (6%)

Query: 3   EQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--ED-TYRQVISCNKNICTL 57
            +  +   ++ + G GGVGK++ + R + G F ++Y  T+   +     +      I   
Sbjct: 5   MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVI-KF 63

Query: 58  QITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
            + DT G  +   ++ +        IL +  TSR + + L   W  ++E +         
Sbjct: 64  NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARW--VKEFQAVVGN--EA 118

Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           PI++  NK D    +++S        K     + E SAKT HN    F  L 
Sbjct: 119 PIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLA 170

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  141 bits (359), Expect = 4e-43
 Identities = 63/178 (35%), Positives = 91/178 (51%), Gaps = 12/178 (6%)

Query: 3   EQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQ 58
               DY  ++++ G  GVGKS L+LRF   T+ ESYI TI  +   R +    K I  LQ
Sbjct: 10  NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KLQ 68

Query: 59  ITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
           I DT G  +F  +   S  +G H  I+VY  T ++S   ++  W  ++E    A+E  ++
Sbjct: 69  IWDTAGQERFRTITS-SYYRGAHGIIVVYDVTDQESFNNVKQ-W--LQEIDRYASE--NV 122

Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
             +LVGNKCD T  + V     +  A   G  F+ETSAK   NV++ F  +    K R
Sbjct: 123 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  141 bits (357), Expect = 5e-43
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 8/164 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
           ++VV+ G G VGK+SLVLR+ +  F + +I T+      +++    K +  L I DT G 
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVN-LAIWDTAGQ 65

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +F A+  +     +  ILVY  T   S ++++  W  ++E +        I + +VGNK
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-W--VKELRKMLGN--EICLCIVGNK 120

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
            D  + R VS  E E+ A+  G     TSAK N  ++ELF +L 
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  140 bits (356), Expect = 6e-43
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 9/170 (5%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
            ++VV G G VGKSS++ R+ KG F + Y  TI  +   RQ+   ++++  L + DT G 
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDV-RLMLWDTAGQ 64

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +F A+ +       A +LV+S T R+S E +   W    +      +   IP  LV NK
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISS-W--REKVVAEVGD---IPTALVQNK 118

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
            D  ++  +   E E  AK     F  TS K + NV E+F  L      +
Sbjct: 119 IDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  141 bits (358), Expect = 6e-43
 Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           +       ++VV G G VGK+ L+L F KG    +Y+PT+ + +  V+        L + 
Sbjct: 17  IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLW 76

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DT G  ++  ++ LS +     +L ++  +R S + +   W    E K   + + +   +
Sbjct: 77  DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKW--EPEIK---HYIDTAKTV 131

Query: 121 LVGNKCD--ETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
           LVG K D  +  + +V+  EG+   +  GC  ++E S+     + E+F +
Sbjct: 132 LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  141 bits (358), Expect = 6e-43
 Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 1   MPEQSNDYR--VVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTL 57
           +P  S      V + G  GVGKSS+V RFV+  F  +  PTI      + + C   +   
Sbjct: 15  VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKF 74

Query: 58  QITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
            I DT G  +F ++  +      A ++VY  T + S   L+  W  ++E K    E  +I
Sbjct: 75  LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-W--VKELKEHGPE--NI 129

Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
            + + GNKCD ++ REV   + +  A+  G   +ETSAK   N++ELF  + 
Sbjct: 130 VMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS 181

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  141 bits (357), Expect = 7e-43
 Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 1   MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICT 56
           +  + +DY  ++++ G   VGK+S + R+   +F  +++ T+  +   + V   +K I  
Sbjct: 14  LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRI-K 72

Query: 57  LQITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELA 115
           LQI DT G  ++  +   +  +G   F+L+Y   +++S   ++  W    + K  + +  
Sbjct: 73  LQIWDTAGQERYRTITT-AYYRGAMGFLLMYDIANQESFAAVQD-W--ATQIKTYSWD-- 126

Query: 116 SIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
           +  ++LVGNKCD  + R V A +G   A   G  F E SAK N NVK++F  L+++   +
Sbjct: 127 NAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK 186

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  141 bits (358), Expect = 8e-43
 Identities = 63/182 (34%), Positives = 93/182 (51%), Gaps = 14/182 (7%)

Query: 1   MPEQSNDY----RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNI 54
           M   + +Y    ++++ G  GVGKS L+LRF   T+ ESYI TI  +   R +    K I
Sbjct: 23  MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 82

Query: 55  CTLQITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANE 113
             LQI DT G  +F  +   S  +G H  I+VY  T ++S   ++  W  ++E    A+E
Sbjct: 83  -KLQIWDTAGQERFRTITS-SYYRGAHGIIVVYDVTDQESFNNVKQ-W--LQEIDRYASE 137

Query: 114 LASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK 173
             ++  +LVGNKCD T  + V     +  A   G  F+ETSAK   NV++ F  +    K
Sbjct: 138 --NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195

Query: 174 NR 175
            R
Sbjct: 196 KR 197

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  140 bits (355), Expect = 9e-43
 Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 8/164 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
            +V + G  GVGKSS++ RFV+ +F  +  PTI      + V   N+      I DT G 
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGL 65

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +F A+  +      A I+VY  T  ++   L+  W  +RE +       SI + + GNK
Sbjct: 66  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-W--VRELRQHGPP--SIVVAIAGNK 120

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           CD T+ REV   + +  A      F+ETSAK   N+ ELF E+ 
Sbjct: 121 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 164

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  140 bits (356), Expect = 1e-42
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 12/179 (6%)

Query: 2   PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTL 57
             +  ++  +VV+ G  GVGK++L+ RF +  F      TI  E + R V+     +   
Sbjct: 18  GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAV-KA 76

Query: 58  QITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
           QI DT G  ++ A+   +  +G    +LV+  T  Q+   +   W  ++E    A    +
Sbjct: 77  QIWDTAGLERYRAITS-AYYRGAVGALLVFDLTKHQTYAVVER-W--LKELYDHAEA--T 130

Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
           I +MLVGNK D ++ REV   E    A+  G  F+ETSA  + NV+  F  +L     +
Sbjct: 131 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAK 189

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  140 bits (355), Expect = 2e-42
 Identities = 55/181 (30%), Positives = 76/181 (41%), Gaps = 21/181 (11%)

Query: 1   MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICT 56
           +P  S     +++V G   VGK+ L  RF  G F +    TI  +   R V    + I  
Sbjct: 12  VPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI-K 70

Query: 57  LQITDTTGSHQFPAMQRLSISKG-----HAFILVYSCTSRQSLEELRPIWEVIRETKGGA 111
           +Q+ DT G  +F    R S+ +      HA + VY  T+  S   L   W  I E K   
Sbjct: 71  IQLWDTAGQERF----RKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AW--IEECKQHL 123

Query: 112 NELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT---NHNVKELFAEL 168
                IP +LVGNKCD     +V     +  A        ETSAK    N +V+ +F  L
Sbjct: 124 LA-NDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182

Query: 169 L 169
            
Sbjct: 183 A 183

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  139 bits (354), Expect = 2e-42
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
            ++V+ G  G GKSSLVLRFVK  F E    TI      + +   +  +   +I DT G 
Sbjct: 13  AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV-KFEIWDTAGQ 71

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            ++ ++  +      A I+V+  T++ S E  +  W  ++E +   N   ++ + L GNK
Sbjct: 72  ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK-W--VQELQAQGNP--NMVMALAGNK 126

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
            D  + R+V+A + +  A+  G  FMETSAKT  NVKE+F E+  
Sbjct: 127 SDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIAR 171

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  140 bits (354), Expect = 2e-42
 Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 3   EQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQ 58
           +   DY  +VV+ G  GVGKS+L+ RF +  F      TI  E   R +    K I   Q
Sbjct: 23  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQ 81

Query: 59  ITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
           I DT G  ++ A+   +  +G    +LVY      + E +   W  ++E +  A+   +I
Sbjct: 82  IWDTAGLERYRAITS-AYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHADS--NI 135

Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
            IMLVGNK D    R V   E  A A+  G  F+ETSA  + NV+  F  +L
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  140 bits (355), Expect = 2e-42
 Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 14/189 (7%)

Query: 1   MPEQSNDY----RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNI 54
           +P  S       + +V G+ G GKS L+ +F++  F++    TI  E   R V    K +
Sbjct: 15  VPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTV 74

Query: 55  CTLQITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANE 113
             LQI DT G  +F ++ R S  +G    +LVY  TSR++   L   W  + + +  A+ 
Sbjct: 75  -KLQIWDTAGQERFRSVTR-SYYRGAAGALLVYDITSRETYNSL-AAW--LTDARTLASP 129

Query: 114 LASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK 173
             +I ++L GNK D    REV+  E    A+     F+ETSA T  NV+E F +      
Sbjct: 130 --NIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187

Query: 174 NRNISLQLE 182
           N+  S +L+
Sbjct: 188 NKIDSGELD 196

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  139 bits (352), Expect = 3e-42
 Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 13/187 (6%)

Query: 3   EQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQ 58
            +  D+  ++++ G  GVGKSSL+LRF   TF  SYI TI  +   R V    + +  LQ
Sbjct: 3   ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKV-KLQ 61

Query: 59  ITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
           I DT G  +F  +   +  +G H  I+VY  TS +S   ++  W  + E     ++   +
Sbjct: 62  IWDTAGQERFRTITS-TYYRGTHGVIVVYDVTSAESFVNVKR-W--LHEINQNCDD---V 114

Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNI 177
             +LVGNK D+ E + V   +    A   G    ETSAK N NV+E+F  +  L      
Sbjct: 115 CRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKK 174

Query: 178 SLQLEKK 184
               +++
Sbjct: 175 DNLAKQQ 181

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  138 bits (351), Expect = 4e-42
 Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 8/165 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
           +++V+ G   VGKSSLVLRFVKG F E    TI      + V   +  +   +I DT G 
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTV-KFEIWDTAGQ 65

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            ++ ++  +      A I+VY  T+ +S    +  W  ++E +  A+   +I I L GNK
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NW--VKELQRQASP--NIVIALSGNK 120

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
            D    R V   E ++ A      FMETSAKT+ NV E+F  +  
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  139 bits (352), Expect = 4e-42
 Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 12/183 (6%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
           ++ +V G  G GKS L+ +F++  F++    TI  E   + +    K +  LQI DT G 
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYV-KLQIWDTAGQ 69

Query: 66  HQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
            +F ++ R S  +G    +LVY  TSR++   L   W  + + +  A++  +I I+L GN
Sbjct: 70  ERFRSVTR-SYYRGAAGALLVYDITSRETYNAL-TNW--LTDARMLASQ--NIVIILCGN 123

Query: 125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN--LEKNRNISLQLE 182
           K D   +REV+  E    A+     F+ETSA T  NV+E F +     L K  +  L  E
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPE 183

Query: 183 KKG 185
           + G
Sbjct: 184 RMG 186

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  140 bits (354), Expect = 4e-42
 Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 6/163 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSH 66
           +++V  G   VGK+SL+ RF+  +F  +Y  TI  D   + +        LQ+ DT G  
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++    I      ++VY  T+  S ++    W  I + +        + IMLVGNK 
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-W--IDDVRTERGS--DVIIMLVGNKT 131

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D  + R+VS  EGE +AK     F+ETSAK  +NVK+LF  + 
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 174

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  139 bits (353), Expect = 4e-42
 Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 12/191 (6%)

Query: 7   DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDT 62
           DY  ++++ G   VGK+S + R+   +F  +++ T+  +   + +   +K I  LQI DT
Sbjct: 6   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRI-KLQIWDT 64

Query: 63  TGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
            G  ++  +   +  +G   FIL+Y  T+ +S   ++  W    + K  + +  +  ++L
Sbjct: 65  AGLERYRTITT-AYYRGAMGFILMYDITNEESFNAVQD-W--STQIKTYSWD--NAQVLL 118

Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQL 181
           VGNKCD  + R VS+  G   A   G  F E SAK N NVK+ F  L+++   +      
Sbjct: 119 VGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLD 178

Query: 182 EKKGQLKGTRK 192
                + G ++
Sbjct: 179 TADPAVTGAKQ 189

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  139 bits (353), Expect = 5e-42
 Identities = 59/191 (30%), Positives = 90/191 (47%), Gaps = 12/191 (6%)

Query: 7   DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDT 62
           DY  ++++ G  GVGKS L+LRF   T+   YI TI  +   + V    K +  LQI DT
Sbjct: 6   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-KLQIWDT 64

Query: 63  TGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
            G  +F  +   S  +G H  I+VY  T ++S   ++  W  ++E    A    ++  +L
Sbjct: 65  AGQERFRTITS-SYYRGSHGIIIVYDVTDQESFNGVKM-W--LQEIDRYATS--TVLKLL 118

Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQL 181
           VGNKCD  + R V     +  A      F+ETSA  + NV++ F  +    K       L
Sbjct: 119 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 178

Query: 182 EKKGQLKGTRK 192
            +  Q K  + 
Sbjct: 179 NETTQKKEDKG 189

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  138 bits (350), Expect = 7e-42
 Identities = 60/174 (34%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 7   DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDT 62
           DY  ++++ G  GVGK+ ++ RF +  F  ++I TI  +   R +    K I  LQI DT
Sbjct: 6   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-KLQIWDT 64

Query: 63  TGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
            G  +F  +   +  +G    +LVY  T+ +S + +R  W  IR  +  A+    +  M+
Sbjct: 65  AGQERFRTITT-AYYRGAMGIMLVYDITNEKSFDNIRN-W--IRNIEEHASA--DVEKMI 118

Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
           +GNKCD  + R+VS   GE  A  +G  FMETSAK N NV+  F  L    K +
Sbjct: 119 LGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  138 bits (351), Expect = 7e-42
 Identities = 62/174 (35%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 7   DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDT 62
            Y  + ++ G  GVGKS L+L+F    F+  +  TI  E   R V    K I  LQI DT
Sbjct: 19  SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQI-KLQIWDT 77

Query: 63  TGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
            G   F ++ R S  +G    +LVY  T R++   L   W  + + +  ++   ++ IML
Sbjct: 78  AGQESFRSITR-SYYRGAAGALLVYDITRRETFNHLT-SW--LEDARQHSSS--NMVIML 131

Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
           +GNK D    R+V   EGEA A+  G  FMETSAKT  NV+E F         +
Sbjct: 132 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 185

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  138 bits (350), Expect = 9e-42
 Identities = 50/178 (28%), Positives = 92/178 (51%), Gaps = 12/178 (6%)

Query: 3   EQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQ 58
           + + DY  ++++ G   VGK+S + R+   TF  +++ T+  +   + V    K +  LQ
Sbjct: 17  QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV-KLQ 75

Query: 59  ITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
           I DT G  ++  +   +  +G   FIL+Y  T+ +S   ++  W    + K  + +  + 
Sbjct: 76  IWDTAGQERYRTITT-AYYRGAMGFILMYDITNEESFNAVQD-W--ATQIKTYSWD--NA 129

Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
            ++LVGNKCD  E R V   +G+  A+  G  F E SAK N +V++ F  L++   ++
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDK 187

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  138 bits (349), Expect = 1e-41
 Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 2   PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTL 57
              +  Y  + ++ G  GVGKS L+ +F +  F      TI  E   R +    + I  L
Sbjct: 8   APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI-KL 66

Query: 58  QITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
           QI DT G  +F A+ R S  +G    ++VY  T R +   L   W  + + +   N   +
Sbjct: 67  QIWDTAGQERFRAVTR-SYYRGAAGALMVYDITRRSTYNHLSS-W--LTDARNLTNP--N 120

Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
             I+L+GNK D    R+V+  E +  A+  G  F+E SAKT  NV++ F E  
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 173

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  138 bits (349), Expect = 2e-41
 Identities = 59/189 (31%), Positives = 83/189 (43%), Gaps = 12/189 (6%)

Query: 3   EQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQ 58
           ++      ++++ G  GVGKSSL+LRF   TF      TI  +   + +         L 
Sbjct: 9   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKA-KLA 67

Query: 59  ITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
           I DT G  +F  +   S  +G    ILVY  T R +  +L   W  + E +        I
Sbjct: 68  IWDTAGQERFRTLTP-SYYRGAQGVILVYDVTRRDTFVKLD-NW--LNELETYCTR-NDI 122

Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNI 177
             MLVGNK D+ ENREV   EG   A+     F+E SAKT   V+  F EL+        
Sbjct: 123 VNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPG 181

Query: 178 SLQLEKKGQ 186
             + E +  
Sbjct: 182 LWESENQNS 190

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  138 bits (349), Expect = 2e-41
 Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 12/185 (6%)

Query: 7   DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDT 62
           DY  +VV+ G  GVGKS+L+ RF +  F      TI  E   R +    K I   QI DT
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQIWDT 61

Query: 63  TGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
            G  ++  +   +  +G    +LVY      + E +   W  ++E +  A+   +I IML
Sbjct: 62  AGQERYRRITS-AYYRGAVGALLVYDIAKHLTYENVER-W--LKELRDHADS--NIVIML 115

Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQL 181
           VGNK D    R V   E  A A+     F+ETSA  + NV+E F  +L          Q+
Sbjct: 116 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175

Query: 182 EKKGQ 186
             +  
Sbjct: 176 ADRAA 180

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  137 bits (348), Expect = 2e-41
 Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 16/184 (8%)

Query: 2   PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTL 57
              S+    ++V+ G   VGKSS ++R  K  FRE+   T+  +   + +I   +    L
Sbjct: 21  KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERT-VL 79

Query: 58  QITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
           Q+ DT G  +F ++ +    K    +L+Y  T  +S   +R  W  +   +  A+E  ++
Sbjct: 80  QLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-W--VDMIEDAAHE--TV 134

Query: 118 PIMLVGNKCD------ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
           PIMLVGNK D          + V    GE  A  +G  F ETSAK   N+ E    L   
Sbjct: 135 PIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLARE 194

Query: 172 EKNR 175
            K R
Sbjct: 195 VKKR 198

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  137 bits (348), Expect = 2e-41
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 12/179 (6%)

Query: 2   PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTL 57
             +  D+  ++V+ G  GVGK+ LV RF +G F      TI  +   + V    + +  L
Sbjct: 19  SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKV-KL 77

Query: 58  QITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
           QI DT G  +F ++ + S  +  +A IL Y  T  +S   L   W  +RE +  A+    
Sbjct: 78  QIWDTAGQERFRSITQ-SYYRSANALILTYDITCEESFRCLPE-W--LREIEQYASN--K 131

Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
           +  +LVGNK D  E REVS    E  ++    +++ETSAK + NV++LF +L     + 
Sbjct: 132 VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 190

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  136 bits (346), Expect = 2e-41
 Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 13/174 (7%)

Query: 7   DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDT 62
           D   ++++ G  GVGKS L++RFV+  F  S+I TI  +   + V    K +  LQI DT
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQIWDT 59

Query: 63  TGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
            G  +F  +   +  +G    ILVY  T  ++   ++  W   +     AN+     ++L
Sbjct: 60  AGQERFRTITT-AYYRGAMGIILVYDITDERTFTNIKQ-W--FKTVNEHAND--EAQLLL 113

Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
           VGNK D  E R V+A +GEA AK  G  F+E+SAK + NV E+F  L  L + +
Sbjct: 114 VGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  137 bits (348), Expect = 3e-41
 Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 13/181 (7%)

Query: 2   PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTL 57
           P++  D+  ++V+ G   VGK+ +V RF  G F E    TI  + T + +    K +  L
Sbjct: 22  PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV-KL 80

Query: 58  QITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
           QI DT G  +F  + + S  +  +  IL Y  T R S   +   W  I + +  A    +
Sbjct: 81  QIWDTAGQERFRTITQ-SYYRSANGAILAYDITKRSSFLSVPH-W--IEDVRKYAGS--N 134

Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELLNLEKNR 175
           I  +L+GNK D +E REVS AE ++ A+ +     +ETSAK + NV+E F  +      R
Sbjct: 135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194

Query: 176 N 176
           +
Sbjct: 195 H 195

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  137 bits (347), Expect = 3e-41
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 22/198 (11%)

Query: 1   MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI------------EDTYRQ 46
           M +   DY  + +  G  GVGK+S++ ++  G F   +I T+             +    
Sbjct: 3   MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62

Query: 47  VISCNKNICTLQITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIR 105
            +   + I  LQ+ DT G  +F ++   +  +    F+L++  T+ QS   +R  W  I 
Sbjct: 63  AVGRGQRI-HLQLWDTAGLERFRSLTT-AFFRDAMGFLLLFDLTNEQSFLNVRN-W--IS 117

Query: 106 ETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF 165
           + +  A    +  I+L GNK D  + R V   E    A+ +G  + ETSA    N+    
Sbjct: 118 QLQMHAYS-ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAI 176

Query: 166 AELLNLEKNRNISLQLEK 183
             LL+L   R +   ++K
Sbjct: 177 EMLLDLIMKR-MERSVDK 193

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  136 bits (345), Expect = 6e-41
 Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 13/180 (7%)

Query: 2   PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTL 57
             +  D+  +V++ G+ GVGK+SL+ RF   TF E+   T+  +   + V    K I  L
Sbjct: 19  SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI-RL 77

Query: 58  QITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
           QI DT G  +F ++   +  +     ILVY  T +++ ++L   W  ++     A+E   
Sbjct: 78  QIWDTAGQERFNSITS-AYYRSAKGIILVYDITKKETFDDLPK-W--MKMIDKYASE--D 131

Query: 117 IPIMLVGNKCDETENREVSAAEGEAEA-KMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
             ++LVGNK D   +RE++  +GE  A ++ G  F E SAK N NV E+F +L++    +
Sbjct: 132 AELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  137 bits (346), Expect = 6e-41
 Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 20/210 (9%)

Query: 1   MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICT 56
              +S D   ++++ G  GVGKS L++RFV+  F  S+I TI  +   + V    K +  
Sbjct: 12  GNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-K 70

Query: 57  LQITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELA 115
           LQ+ DT G  +F  +   +  +G    ILVY  T  ++   ++  W   +     AN+  
Sbjct: 71  LQLWDTAGQERFRTITT-AYYRGAMGIILVYDVTDERTFTNIKQ-W--FKTVNEHAND-- 124

Query: 116 SIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
              ++LVGNK D  E R V+A +GEA AK  G  F+E+SAK + NV E+F  L  L + +
Sbjct: 125 EAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183

Query: 176 NISLQLEKKG-------QLKGTRKLKEKCS 198
             S +L   G        +        K +
Sbjct: 184 IDSNKLVGVGNGKEGNISINSGSGNSSKSN 213

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  135 bits (342), Expect = 1e-40
 Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 11/178 (6%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
            +V++ G  GVGK+SL+ R+V   + + Y  TI  +   ++V      + T+Q+ DT G 
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68

Query: 66  HQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLV 122
            +F ++   +  +G    +LVY  T+  S E ++  W  E         N   + P +++
Sbjct: 69  ERFQSLGV-AFYRGADCCVLVYDVTNASSFENIK-SWRDEF--LVHANVNSPETFPFVIL 124

Query: 123 GNKCD-ETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELLNLEKNRNIS 178
           GNK D E   + VS    +  AK  G      TSAK   NV   F E+      +N +
Sbjct: 125 GNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQA 182

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  134 bits (339), Expect = 3e-40
 Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 13/175 (7%)

Query: 7   DY--RVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTI--EDTYRQVISCNKNICTLQITD 61
           D   +V++ G  GVGK+ L++RF  G F   ++I T+  +   + +      +  LQ+ D
Sbjct: 8   DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV-KLQMWD 66

Query: 62  TTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           T G  +F ++   +  +  HA +L+Y  T++ S + ++  W  + E    A     + +M
Sbjct: 67  TAGQERFRSVTH-AYYRDAHALLLLYDVTNKASFDNIQA-W--LTEIHEYAQH--DVALM 120

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
           L+GNK D    R V   +GE  AK +G  FMETSAKT  NV   F  +    K R
Sbjct: 121 LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  134 bits (340), Expect = 5e-40
 Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 11/172 (6%)

Query: 1   MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTL 57
             +       ++V+ G GG GK++ V R + G F + Y+ T+  + +  V   N+     
Sbjct: 7   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66

Query: 58  QITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI 117
            + DT G  +F  ++     +    I+++  TSR + + + P W   R+         +I
Sbjct: 67  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNW--HRDLVRVCE---NI 120

Query: 118 PIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           PI+L GNK D  + +    A+     +     + + SAK+N+N ++ F  L 
Sbjct: 121 PIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 170

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  134 bits (339), Expect = 9e-40
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 21/191 (10%)

Query: 1   MPEQSNDY----RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-----------EDTYR 45
           +P  S DY    +++  G  GVGK++ + R+    F   +I T+                
Sbjct: 15  VPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGP 74

Query: 46  QVISCNKNICTLQITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVI 104
              S       LQ+ DT G  +F ++   +  +    F+L++  TS+QS   +R  W  +
Sbjct: 75  NGSSGKAFKVHLQLWDTAGQERFRSLTT-AFFRDAMGFLLMFDLTSQQSFLNVRN-W--M 130

Query: 105 RETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164
            + +  A    +  I+L+GNK D  + REV+  +    A  +G  + ETSA T  NV++ 
Sbjct: 131 SQLQANAYC-ENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA 189

Query: 165 FAELLNLEKNR 175
              LL+L   R
Sbjct: 190 VETLLDLIMKR 200

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  133 bits (336), Expect = 1e-39
 Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 22/179 (12%)

Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
           +    + V+ G G VGK+SLV+ +    +   YIPT  D +  V+S +     LQ+ DT 
Sbjct: 17  EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTA 76

Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIML 121
           G  +F  ++ L  +    F+L +S  S  S + +   W  E+              PI+L
Sbjct: 77  GQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK-------APIIL 129

Query: 122 VGNKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
           VG + D  E+ +            V     +  A+      ++E SA T  N+KE+F  
Sbjct: 130 VGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  133 bits (337), Expect = 2e-39
 Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 12/196 (6%)

Query: 2   PEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTL 57
                D   ++V+ G  GVGKS+L+ RF K  F      TI  E   R +    K I   
Sbjct: 6   YGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRI-KA 64

Query: 58  QITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
           QI DT G  ++ A+   +  +G    ++VY  +   S E     W  + E +  A++  +
Sbjct: 65  QIWDTAGQERYRAITS-AYYRGAVGALIVYDISKSSSYENCNH-W--LSELRENADD--N 118

Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN 176
           + + L+GNK D    R V   E +  A+     F ETSA  + NV + F EL+N    + 
Sbjct: 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKV 178

Query: 177 ISLQLEKKGQLKGTRK 192
              Q++          
Sbjct: 179 SKHQMDLGDSSANGNA 194

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  131 bits (332), Expect = 3e-39
 Identities = 55/175 (31%), Positives = 83/175 (47%), Gaps = 12/175 (6%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQ 58
           M  +S+ ++V++ G GGVGKSSL+ R+V   F      TI  E   + +      + T+Q
Sbjct: 1   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFV-TMQ 59

Query: 59  ITDTTGSHQFPAMQRLSISKG-HAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELA 115
           I DT G  +F +++     +G    +L +S    QS + L   W  E          E  
Sbjct: 60  IWDTAGQERFRSLRT-PFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEF--IYYADVKEPE 115

Query: 116 SIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAELL 169
           S P +++GNK D    R+VS  E +A  +  G   + ETSAK   NV   F E +
Sbjct: 116 SFPFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 169

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  129 bits (325), Expect = 4e-38
 Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 20/182 (10%)

Query: 1   MPEQSNDYRV--VVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQ 58
           M        +  VV G G VGK+ L++ +    F E Y+PT+ D Y   ++       L 
Sbjct: 10  MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLG 69

Query: 59  ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP 118
           + DT G   +  ++ LS      F++ +S  +  S + ++  W  + E K  A    ++P
Sbjct: 70  LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW--VPELKEYA---PNVP 124

Query: 119 IMLVGNKCDETENRE------------VSAAEGEAEAKMWG-CHFMETSAKTNHNVKELF 165
            +L+G + D  ++ +            +   +G+  AK  G C ++E SA T   +K +F
Sbjct: 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

Query: 166 AE 167
            E
Sbjct: 185 DE 186

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  128 bits (324), Expect = 5e-38
 Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 16/169 (9%)

Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
            V  G G VGK+ L++ +   TF   Y+PT+ D +   +  N     L + DT G   + 
Sbjct: 11  CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN 70

Query: 70  AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD-- 127
            ++ LS      FIL +S  S+ S E +   W  I E K  A     +PI+LVG K D  
Sbjct: 71  RLRPLSYRGADVFILAFSLISKASYENVSKKW--IPELKHYA---PGVPIVLVGTKLDLR 125

Query: 128 --------ETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
                         ++  +GE   K+ G   ++E S+K+  NVK +F  
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  128 bits (325), Expect = 7e-38
 Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 14/200 (7%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISCNKNICTLQITDTTGS 65
            +V++ G  GVGK+SL+ ++V   F   Y  TI  +   ++V+  ++ + T+QI DT G 
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLV-TMQIWDTAGQ 67

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGAN--ELASIPIMLVG 123
            +F ++           +LV+  T+  + + L   W    E    A+  +  + P +++G
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SW--RDEFLIQASPRDPENFPFVVLG 124

Query: 124 NKCDETENREVSAAEGEAEAKM-WGCHFMETSAKTNHNVKELFAEL----LNLEKNRNIS 178
           NK D  ENR+V+    +A         + ETSAK   NV++ F  +    L  E    + 
Sbjct: 125 NKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELY 183

Query: 179 LQLEKKGQLKGTRKLKEKCS 198
            +  +  +L    + K    
Sbjct: 184 NEFPEPIKLDKNERAKASAE 203

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  126 bits (319), Expect = 6e-37
 Identities = 38/193 (19%), Positives = 72/193 (37%), Gaps = 19/193 (9%)

Query: 3   EQSNDY--RVVVFGAGGVGKSSLVLRFVK--GTFRESYIPTI--EDTYRQVISCNKNICT 56
           + +     +V V G   VGKS+L+  F      F + Y  T   E     V   +  + +
Sbjct: 14  DITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTV-S 72

Query: 57  LQI--TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW-EVIRETKGGANE 113
           +++   DT GS  +        +  +  ILV+  +S +S E  +  W E+++  +     
Sbjct: 73  VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKA-WFELLKSARPDRER 131

Query: 114 LASIPIMLVGNKCD-ETENREVSAAEGEAEAKMWGCHFMETSAK-TNHNVKELF----AE 167
              +  +LV NK D   +  +V     +  A      F + SA     +    F      
Sbjct: 132 --PLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATT 189

Query: 168 LLNLEKNRNISLQ 180
                +++  + Q
Sbjct: 190 FYRNYEDKVAAFQ 202

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  126 bits (318), Expect = 8e-37
 Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 22/173 (12%)

Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
           +VV G G  GK+ L++ F K  F E Y+PT+ + Y   I  +     L + DT G   + 
Sbjct: 28  LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD 87

Query: 70  AMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPIMLVGNKCD 127
            ++ LS       ++ +S  S  SLE +   W  EV             +PI+LV NK D
Sbjct: 88  RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN-------VPIILVANKKD 140

Query: 128 ETENRE------------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
              +              V   +G A A     + ++E SAKT   V+E+F  
Sbjct: 141 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  126 bits (317), Expect = 1e-36
 Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 18/180 (10%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           +  Q    + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + 
Sbjct: 24  LYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 83

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DT G   +  ++ LS  +   F++ +S  S  S E +R  W    E +       + PI+
Sbjct: 84  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW--YPEVRHHC---PNTPII 138

Query: 121 LVGNKCD------------ETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
           LVG K D            E +   ++  +G A AK  G   ++E SA T   +K +F E
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  126 bits (317), Expect = 1e-36
 Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 46/205 (22%)

Query: 3   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI---------------------- 40
           E+ + Y+ V+ G   VGKSS+VLR  K TF E+   TI                      
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 41  ----------------EDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 84
                                   + N       I DT G  ++ ++  L        I+
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 85  VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK 144
           V+  ++  +L+  +  W  + + K  +N      I+LV NK D+    +V   E +  A+
Sbjct: 123 VFDISNSNTLDRAKT-W--VNQLKISSN----YIIILVANKIDK-NKFQVDILEVQKYAQ 174

Query: 145 MWGCHFMETSAKTNHNVKELFAELL 169
                F++TSAKT  N+K +F  L 
Sbjct: 175 DNNLLFIQTSAKTGTNIKNIFYMLA 199

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  123 bits (310), Expect = 2e-35
 Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 18/171 (10%)

Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
           VV+ G GG GK+SL++ F  G F ESY PT+ + Y   +        L I DT G   + 
Sbjct: 37  VVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD 96

Query: 70  AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129
            ++ L        +L +  TS  S + +   W    E          +PI++VG K D  
Sbjct: 97  RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRW--YPEVNHFC---KKVPIIVVGCKTDLR 151

Query: 130 ENRE------------VSAAEGEAEAKMWGCH-FMETSAKTNHNVKELFAE 167
           +++             V+   G+  A+  G   ++E SA+ + NV  +F E
Sbjct: 152 KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  120 bits (303), Expect = 1e-34
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 22/184 (11%)

Query: 1   MPEQSNDY----RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICT 56
           +P  S+      ++V+ G G  GK+ L++ F K  F E Y+PT+ + Y   I  +     
Sbjct: 15  VPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVE 74

Query: 57  LQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
           L + DT G   +  ++ LS       ++ +S  S  SLE +   W    E K       +
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW--TPEVKHFC---PN 129

Query: 117 IPIMLVGNKCD------------ETENREVSAAEGEAEAKMWGCH-FMETSAKTNHNVKE 163
           +PI+LVGNK D            + +   V + EG   A       ++E SAKT   V+E
Sbjct: 130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVRE 189

Query: 164 LFAE 167
           +F  
Sbjct: 190 VFEM 193

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  118 bits (298), Expect = 5e-34
 Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 18/172 (10%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT G   +
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS  +    ++ +S  S  S E +R  W    E +       + PI+LVG K D 
Sbjct: 67  DRLRPLSYPQTDVSLICFSLVSPASFENVRAKW--YPEVRHHC---PNTPIILVGTKLDL 121

Query: 129 TENRE------------VSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAE 167
            ++++            ++  +G A AK  G   ++E SA T   +K +F E
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  116 bits (293), Expect = 3e-33
 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 19/179 (10%)

Query: 3   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDT 62
            Q+   ++VV G    GK++L+  F K  F E+Y+PT+ + Y      +     L + DT
Sbjct: 3   NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDT 62

Query: 63  TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV 122
           +GS  +  ++ LS     A ++ +  +  ++L+ +   W    E +       +  ++LV
Sbjct: 63  SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW--KGEIQEFC---PNTKMLLV 117

Query: 123 GNKCDETENRE------------VSAAEGEAEAKMWGCH-FMETSAKTNHN-VKELFAE 167
           G K D   +              VS  +G   AK  G   ++E SA  + N V+++F  
Sbjct: 118 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  116 bits (291), Expect = 9e-33
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 23/182 (12%)

Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
           P Q+   ++VV G    GK++L+  F K  F E+Y+PT+ + Y      +     L + D
Sbjct: 23  PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 82

Query: 62  TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRETKGGANELASIPI 119
           T+GS  +  ++ LS     A ++ +  +  ++L+ +   W  E+               +
Sbjct: 83  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN-------TKM 135

Query: 120 MLVGNKCD------------ETENREVSAAEGEAEAKMWGC-HFMETSAKTNHN-VKELF 165
           +LVG K D                  VS  +G   AK  G   ++E SA  + N V+++F
Sbjct: 136 LLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

Query: 166 AE 167
             
Sbjct: 196 HV 197

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  114 bits (288), Expect = 1e-32
 Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 9/166 (5%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSH 66
            ++V+ G   VGKSS+VLRFV   F E+  PTI      Q ++ N++    +I DT G  
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++         A ++VY  T  QS  + R  W  ++E    A++   I I LVGNK 
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARH-W--VKELHEQASK--DIIIALVGNKI 118

Query: 127 DETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D  +    R+V+  EGE  A+  G  F ETSAKT  NV ++F  + 
Sbjct: 119 DXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  114 bits (287), Expect = 8e-32
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 13/154 (8%)

Query: 26  RFVKGTFRESYIPTIEDTYRQ-----VISCNKNICTLQITDTTGSHQFPAMQRLSIS-KG 79
            F+     + +  T    Y +      ++  + +             F   Q        
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163

Query: 80  HAFILVYSCTS--RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA 137
             F+L    +    ++ ++       +             PI++V  KCDE   R +  A
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK----KPIVVVLTKCDEGVERYIRDA 219

Query: 138 EGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
              A +K      +ETSA++N NV   F+ L+ L
Sbjct: 220 HTFALSK-KNLQVVETSARSNVNVDLAFSTLVQL 252

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  117 bits (294), Expect = 5e-31
 Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 20/176 (11%)

Query: 3   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI---------EDTYRQVISCNKN 53
               + +V + G G  GK+SL+ + +  TF      T           +           
Sbjct: 37  VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELK 96

Query: 54  ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW-EVIRETKGGAN 112
            C     D  G     A  +  +++   ++L+    +  +       W   I +  G + 
Sbjct: 97  ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHY----WLRHIEKYGGKS- 151

Query: 113 ELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
                P+++V NK DE  +  +   +           F   S K    V+ +   L
Sbjct: 152 -----PVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  108 bits (271), Expect = 8e-30
 Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 19/172 (11%)

Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
           +V+ G    GK++++    K  + E+Y+PT+ + Y   +   +    L + DT+GS  + 
Sbjct: 30  LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD 89

Query: 70  AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129
            ++ L  S   A +L +  +  ++++     W    E         S  ++L+G K D  
Sbjct: 90  NVRPLCYSDSDAVLLCFDISRPETVDSALKKW--RTEILDYC---PSTRVLLIGCKTDLR 144

Query: 130 ENRE------------VSAAEGEAEAKMWGCH-FMETSAKTN-HNVKELFAE 167
            +              +S  +G A AK  G   ++E SA T+  ++  +F  
Sbjct: 145 TDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 196

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  106 bits (266), Expect = 2e-29
 Identities = 30/195 (15%), Positives = 75/195 (38%), Gaps = 25/195 (12%)

Query: 6   NDYRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTI--EDTYRQVISCNKNICT--LQI 59
           N  ++++ G  G GK++L+ + +K    +      T+  +     +   +K      L +
Sbjct: 1   NRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNV 60

Query: 60  TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI 119
            D  G  +F +     +++   ++ VY  +  Q+  +    W  +   K  A+     P+
Sbjct: 61  WDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPW--LFNIKARASS---SPV 115

Query: 120 MLVGNKCDETENRE---VSAAEGEAEAKMWG-----CHFMETSAKTNHNVKELFAELLNL 171
           +LVG   D ++ ++     +   +      G      +    + + +  + +L   ++  
Sbjct: 116 ILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTII-- 173

Query: 172 EKNRNISLQLEKKGQ 186
               N SL  + + Q
Sbjct: 174 ----NESLNFKIRDQ 184

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 95.8 bits (238), Expect = 5e-24
 Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 18/180 (10%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
                   + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + 
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 208

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DT G   +  ++ LS  +   F++ +S  S  S   +R  W    E +   +   + PI+
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKW--YPEVR---HHCPNTPII 263

Query: 121 LVGNKCDETENRE------------VSAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAE 167
           LVG K D  ++++            ++  +G A AK  G   ++E SA T   +K +F E
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-09
 Identities = 27/189 (14%), Positives = 56/189 (29%), Gaps = 42/189 (22%)

Query: 4   QSNDYRVVVFGAGGVGKSSLVL----------RFVKGTFRESYIPTI--EDTYRQVISCN 51
           +     V++ G  G GK+ + L          +     F   ++  +   ++   V+   
Sbjct: 148 RPAKN-VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF---WL-NLKNCNSPETVLEML 202

Query: 52  KNICTLQIT---DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIW--EVIRE 106
           + +   QI     +   H      R+   +     L+ S      L  L  +   +    
Sbjct: 203 QKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 107 TKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHF-METSAK--TNHNVKE 163
                       I+L       T  ++V+     A       H  ++  +   T   VK 
Sbjct: 262 FNLSC------KILLT------TRFKQVTDFLSAATTT----HISLDHHSMTLTPDEVKS 305

Query: 164 LFAELLNLE 172
           L  + L+  
Sbjct: 306 LLLKYLDCR 314

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 52.1 bits (125), Expect = 9e-09
 Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 17/178 (9%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESY-----------IPTI--EDTYRQVISCNKNI 54
           +++V +G G  GK++  L+++     E               T+  +     +       
Sbjct: 15  FKIVYYGPGLSGKTTN-LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73

Query: 55  CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANEL 114
               +    G   + A ++L +      + V      +       +  +          L
Sbjct: 74  TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL 133

Query: 115 ASIPIMLVGNKCDETENREVSAAE-GEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
             +PI++  NK D   +  +                 +E  A     V E   E+  L
Sbjct: 134 DDVPIVIQVNKRD-LPDA-LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL 189

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 38/178 (21%), Positives = 59/178 (33%), Gaps = 22/178 (12%)

Query: 6   NDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
               VV+ G   VGKS+L+           SY  T                  QI DT G
Sbjct: 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYF--RYQIIDTPG 223

Query: 65  SHQFPAMQRLSISK----GHA-------FILVYSCTSRQSLEELRPIWEVIRETKGGANE 113
               P  +R  I K              +I   S      LEE   ++E +        E
Sbjct: 224 LLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG------E 277

Query: 114 LASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
              +P ++V NK D  +   +   E   + K  G + ++ SA     +  +  E++  
Sbjct: 278 FKDLPFLVVINKIDVADEENIKRLEKFVKEK--GLNPIKISALKGTGIDLVKEEIIKT 333

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 27/189 (14%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVIS--CNKNICTLQITDTTGSH 66
           ++++ G  G GKSS+    +   +       +  T     S        TL + D  G  
Sbjct: 5   KLLLMGRSGSGKSSM-RSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63

Query: 67  QF-----PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
            F        +          I V+   S + L+++    + +++ +          I +
Sbjct: 64  VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLR---KYSPDAKIFV 120

Query: 122 VGNKCD---------ETENREVSAAEGEAEAKMWGCHFMETSAKTNHN-------VKELF 165
           + +K D           +    + +E  +E          TS             V  L 
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLI 180

Query: 166 AELLNLEKN 174
             + N + N
Sbjct: 181 PNMSNHQSN 189

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 28/185 (15%)

Query: 4   QSNDYRVVVFGAGGVGKSSLV-LRFVKGTFRE--SYIPTIEDTYRQVISCNKNICTLQIT 60
           Q +  R+++ G    GKSS+  + F K +  E      T    Y+  IS +  +   QI 
Sbjct: 17  QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN-KIYKDDISNSSFVN-FQIW 74

Query: 61  DTTGSHQF--PAMQRLSISKG-HAFILVYSCTSR--QSLEELRPIWEVIRETKGGANELA 115
           D  G   F  P      I +G  A I V        ++L  L        +         
Sbjct: 75  DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYK------VNP 128

Query: 116 SIPIMLVGNKCD-----------ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL 164
            +   +  +K D              ++  +    +A  +     F  TS   +H++ E 
Sbjct: 129 DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIY-DHSIFEA 187

Query: 165 FAELL 169
           F++++
Sbjct: 188 FSKVV 192

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 5/104 (4%)

Query: 93  SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-----WG 147
           S +    I E I       +  ++  I++  NK D+     +S        ++       
Sbjct: 119 SEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNP 178

Query: 148 CHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKGQLKGTR 191
             F   S  T   V++       L KN      L  + QL  T+
Sbjct: 179 IKFSSFSTLTGVGVEQAKITACELLKNDQAESILLDQEQLLNTK 222

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 13/135 (9%)

Query: 4   QSNDYRVVVFGAGGVGKSSLV--LRFVKGTFRESYIPTIEDTYRQVIS-CNKNICTLQIT 60
            S+   V V G  G GKSS +  LR +      +    + +   +     + NI  +   
Sbjct: 66  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 125

Query: 61  DT--TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP 118
           D    GS  FP    L   K + +      ++ +  +    I + I   K          
Sbjct: 126 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMK--------KE 177

Query: 119 IMLVGNKCDETENRE 133
              V  K D     E
Sbjct: 178 FYFVRTKVDSDITNE 192

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 32/189 (16%), Positives = 56/189 (29%), Gaps = 41/189 (21%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFV----------KGTFRESYIPTIE-DTYRQVIS 49
           +P+      +VV G   VGKSS +   V           GT  +    ++E      V  
Sbjct: 28  LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVT- 86

Query: 50  CNKNICTLQITDTTGSHQFPAMQRL-------SISKGHAFILVYSCTSRQSLEELRPIWE 102
                    + DT G      + RL          +    ILV       +  E   +  
Sbjct: 87  ---------LVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA--PTPYEDD-VVN 134

Query: 103 VIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK 162
           + +E +        IP ++V NK D    +             +    +  SA       
Sbjct: 135 LFKEME--------IPFVVVVNKIDVLGEKAEELK--GLYESRYEAKVLLVSALQKKGFD 184

Query: 163 ELFAELLNL 171
           ++   +  +
Sbjct: 185 DIGKTISEI 193

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 12/173 (6%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +  + + G    GK++ V     G F E  IPT+    R++     N+ T+++ D  G  
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK--GNV-TIKLWDIGGQP 78

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNK 125
           +F +M         A + +     ++ +E  +  +  ++ +      +L  IP++++GNK
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK-----PQLQGIPVLVLGNK 133

Query: 126 CDETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
            D       +E+      +  +         S K   N+      L+   K+R
Sbjct: 134 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 33/181 (18%), Positives = 57/181 (31%), Gaps = 38/181 (20%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-IEDTYRQVISCNKNIC--TLQITDTTG- 64
             V+ G    GKS+L+   +    +E  I + +  T R  I           ++TDT G 
Sbjct: 235 STVIAGKPNAGKSTLLNTLLG---QERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGL 291

Query: 65  --------------SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGG 110
                         S          +++    + +    + +  +EL  I E+       
Sbjct: 292 REAGEEIEHEGIRRSRM-------KMAEADLILYLLDLGTERLDDELTEIRELKAAHPA- 343

Query: 111 ANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
                    + V NK D   N +   A   A A   G   +  SA     +  L   + +
Sbjct: 344 ------AKFLTVANKLDRAANAD---ALIRAIADGTGTEVIGISALNGDGIDTLKQHMGD 394

Query: 171 L 171
           L
Sbjct: 395 L 395

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 13/173 (7%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
             R+++ G    GK++++ +   G    + IPTI      V    KNI    + D  G  
Sbjct: 29  QMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--KNI-CFTVWDVGGQD 84

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNK 125
           +   + R         I V     R+ ++E    + ++++E     +EL    +++  NK
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE-----DELRDAVLLVFANK 139

Query: 126 CDETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
            D        E++   G    +    +   T A     + +    L +    R
Sbjct: 140 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 13/175 (7%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           + R+++ G  G GK++++ R   G    +  PTI      +    KN+  L + D  G  
Sbjct: 18  ELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVETLSY--KNL-KLNVWDLGGQT 73

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNK 125
                 R   +   A I V   T +  +      +  +++E      EL    +++  NK
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE-----EELQDAALLVFANK 128

Query: 126 CDETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNI 177
            D+       EVS      E K      + +SA     + E    L+++ K   +
Sbjct: 129 QDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQL 183

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 24/177 (13%)

Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF- 68
           V++ G    GKSS+  + V    +      +E T    +     +  L + +  G   + 
Sbjct: 2   VLLMGVRRCGKSSI-CKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYF 60

Query: 69  -PAMQRLSISKG-HAFILVYSCTS--RQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
            P+     + K   A + V         ++  L  I E   +         SI I ++ +
Sbjct: 61  EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYK------VNPSINIEVLIH 114

Query: 125 KCD-----------ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
           K D               +       E         F  TS   +H++ E F+ ++ 
Sbjct: 115 KVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF-DHSIYEAFSRIVQ 170

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 29/173 (16%), Positives = 64/173 (36%), Gaps = 13/173 (7%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +++V++ G    GK++++ +F       +  PTI     +++    N     + D  G  
Sbjct: 16  EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI--NNTR-FLMWDIGGQE 71

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNK 125
              +      +     I+V   T R+ +   R  +++++        +L    +++  NK
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH-----EDLRKAGLLIFANK 126

Query: 126 CDETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
            D  E     E+S        K    H     A T   + +    +++  K R
Sbjct: 127 QDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 43/181 (23%), Positives = 63/181 (34%), Gaps = 41/181 (22%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPT-IEDTYRQVISCNKNIC--TLQITDTTG- 64
           +VV+ G    GKSSL+        RE+ I T I  T R V+  + +I    L I DT G 
Sbjct: 6   KVVIAGRPNAGKSSLLNALAG---REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 62

Query: 65  --------------SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGG 110
                         + Q        I +    + +    +     +   IW         
Sbjct: 63  REASDEVERIGIERAWQ-------EIEQADRVLFMVD-GTTTDAVDPAEIWPEFI----- 109

Query: 111 ANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
           A   A +PI +V NK D T        E    +++ G   +  SA+T   V  L   L  
Sbjct: 110 ARLPAKLPITVVRNKADIT-------GETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQ 162

Query: 171 L 171
            
Sbjct: 163 S 163

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 13/173 (7%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           + R+++ G  G GK++++ R   G    + IPTI      V    KN+   Q+ D  G  
Sbjct: 7   EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTY--KNL-KFQVWDLGGLT 62

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNK 125
                 R   S   A I V     R  +   +  +  ++ E      EL    +++  NK
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-----EELRKAILVVFANK 117

Query: 126 CDETE---NREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
            D  +   + E++ + G    K       +TSA     + E    L+   K+R
Sbjct: 118 QDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 25/182 (13%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
             RV++ G    GK+S++ R   G    + +PT+      +    KNI + ++ D  G  
Sbjct: 22  KIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVGVNLETLQY--KNI-SFEVWDLGGQT 77

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRP-IWEVIRETKGGANELASIPIMLVGNK 125
                 R   S   A I V   T R  +   +  ++ ++ E     +EL    +++  NK
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDE-----DELRKSLLLIFANK 132

Query: 126 CDETENREVSAAEGEAE-AKMWG--------CHFMETSAKTNHNVKELFAELLNLEKNRN 176
            D      +  A  EAE A+  G           +++S+KT   + E    L+   + + 
Sbjct: 133 QD------LPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQG 186

Query: 177 IS 178
           + 
Sbjct: 187 LG 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.98
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.9
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.9
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.9
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.89
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.89
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.87
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.86
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.86
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.86
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.86
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.86
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.86
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.85
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.85
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.85
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.85
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.84
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.84
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.83
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.83
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.83
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.83
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.82
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.82
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.82
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.82
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.82
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.82
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.81
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.81
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.8
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.79
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.79
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.78
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.78
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.78
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.77
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.76
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.76
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.76
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.75
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.74
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.74
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.74
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.72
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.72
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.72
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.71
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.69
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.69
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.68
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.66
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.64
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.64
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.61
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.6
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.59
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.58
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.57
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.56
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.54
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.46
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.43
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.42
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.38
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.36
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.35
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.24
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.04
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.02
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.02
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.0
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.94
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.91
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.85
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.84
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.72
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.72
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.71
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.64
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.63
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.57
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.4
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.4
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.32
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.22
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.2
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.14
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.11
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.03
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.86
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.69
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.69
2xxa_A	433	Signal recognition particle protein; protein trans	97.66
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.64
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.58
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.52
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.51
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.49
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.48
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.47
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.44
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.44
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.43
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.43
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.42
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.4
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.38
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.37
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.36
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.35
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.35
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.34
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.34
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.33
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.33
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.3
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.3
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.3
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.29
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.28
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.27
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.27
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.27
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.25
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.25
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.24
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.23
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.22
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.21
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.21
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.2
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.2
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.2
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.19
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.19
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.19
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.19
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.18
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.18
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.18
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.18
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.18
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.17
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.17
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.17
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.17
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.17
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.16
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.16
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.16
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.15
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.14
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.14
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.14
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.14
1g6h_A	257	High-affinity branched-chain amino acid transport	97.14
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.14
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.13
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.13
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.13
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.13
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.13
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.13
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.13
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.12
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.12
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.12
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.11
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.11
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.11
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.11
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.11
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.11
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.11
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.1
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.1
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.09
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.08
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.08
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.08
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.07
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.07
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.06
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.06
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.06
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.05
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.05
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.05
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.05
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.04
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.04
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.04
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.04
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.03
1via_A	175	Shikimate kinase; structural genomics, transferase	97.03
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.02
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.02
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.02
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.01
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.0
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.99
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.99
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.99
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.99
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.99
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.98
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.97
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.97
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.96
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.96
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.96
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.96
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.95
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.94
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.92
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.91
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.91
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.9
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.9
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.89
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.89
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.89
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.88
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.87
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.87
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.87
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.86
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.86
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.86
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.86
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.85
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.85
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.85
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.85
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.85
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.85
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.84
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.84
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.84
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.8
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.8
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.79
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.79
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.78
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.77
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.77
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.77
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.76
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.75
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.75
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.74
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.74
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.72
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.71
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.66
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.66
2og2_A	359	Putative signal recognition particle receptor; nuc	96.66
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.63
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.63
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.62
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.61
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.6
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.6
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.59
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.59
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.58
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.57
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.56
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.56
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.56
3bos_A	242	Putative DNA replication factor; P-loop containing	96.55
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.53
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.53
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.53
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.53
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.51
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.5
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.48
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.47
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.47
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.46
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.37
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.37
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.37
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.35
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.35
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.34
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.33
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.32
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.32
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.3
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.3
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.29
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.29
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.29
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.29
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.27
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.27
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.26
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.25
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.24
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.23
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.23
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.21
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.21
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.19
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.18
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.18
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.16
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.16
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.15
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.14
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.14
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.13
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.11
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.07
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.04
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.04
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.04
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.04
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.04
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.03
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.03
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.02
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.01
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.01
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.01
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.01
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.99
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.98
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.96
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.95
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.93
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.92
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.91
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	95.89
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.89
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.88
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.86
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.85
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.85
3co5_A	143	Putative two-component system transcriptional RES	95.84
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.83
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.8
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.8
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.73
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.72
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.72
2qgz_A	308	Helicase loader, putative primosome component; str	95.71
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.71
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.68
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.68
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.68
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.67
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.67

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.2e-40  Score=239.50  Aligned_cols=168  Identities=33%  Similarity=0.492  Sum_probs=143.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      +-+.+||+|+|++|||||||+++++.+.+...+.||.+ +........++..+.+++|||+|++++..++..++++++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            34579999999999999999999999999999999988 45566777888999999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|||++++.++..+..|+..+.....     ++.|++||+||+|+.+.+++...++..+++..+++|++|||++|.||+
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~~~-----~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~  164 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTERG-----SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK  164 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHT-----TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHH
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHhcC-----CCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHH
Confidence            999999999999999999999988773     678999999999999988899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q psy8700         163 ELFAELLNLEKNRN  176 (200)
Q Consensus       163 ~~~~~i~~~~~~~~  176 (200)
                      ++|+.|.+.+....
T Consensus       165 e~F~~i~~~i~~~~  178 (216)
T 4dkx_A          165 QLFRRVAAALPGME  178 (216)
T ss_dssp             HHHHHHHHHC----
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999875443

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-37  Score=220.70  Aligned_cols=196  Identities=74%  Similarity=1.156  Sum_probs=151.7

Q ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700           1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGH   80 (200)
Q Consensus         1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   80 (200)
                      |++.+..++|+++|++|||||||+++|.++.+...+.++.+..+......++..+.+.+|||||++.+..++..++..+|
T Consensus         2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   81 (199)
T 2gf0_A            2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGH   81 (199)
T ss_dssp             ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred             CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence            67788899999999999999999999999888777888887777767777888899999999999999999999999999


Q ss_pred             EEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCc
Q psy8700          81 AFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHN  160 (200)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~  160 (200)
                      ++++|+|++++.++..+..|+..+.....   ..+..|+++|+||+|+.+ .+....+...+....+++++++||++|.|
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (199)
T 2gf0_A           82 AFILVFSVTSKQSLEELGPIYKLIVQIKG---SVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYN  157 (199)
T ss_dssp             EEEEEEETTCHHHHHTTHHHHHHHHHHHS---CGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCC
Confidence            99999999999999999999888877653   124689999999999975 44456667777888899999999999999


Q ss_pred             HHHHHHHHHHHHhccchhHHHhhh--cccccccccCCccccC
Q psy8700         161 VKELFAELLNLEKNRNISLQLEKK--GQLKGTRKLKEKCSVM  200 (200)
Q Consensus       161 i~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~c~~~  200 (200)
                      ++++|++|.+.+.++........+  ...+.+++++++|+||
T Consensus       158 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~C~~~  199 (199)
T 2gf0_A          158 VKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKGKCTLM  199 (199)
T ss_dssp             HHHHHHHHHHHCSSSCEECC----------------------
T ss_pred             HHHHHHHHHHHHhhhhccccccccccccCccccCCCCceeeC
Confidence            999999999999877665544433  2222223445567765

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=3.4e-36  Score=212.28  Aligned_cols=188  Identities=35%  Similarity=0.644  Sum_probs=151.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      +..+||+++|++|||||||+++|.+..+...+.++....+......++..+.+.+|||||++.+..++..++..+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            46799999999999999999999998887788888877777777788888999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|++++.++..+..|+..+.....    ....|+++|+||+|+.+ ..........+....+++++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  156 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKD----SEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDA  156 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTT----CSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC----CCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999998888663    46789999999999974 344566777888888999999999999999999


Q ss_pred             HHHHHHHHhccchhHHHhhhcccccccccCCccccC
Q psy8700         165 FAELLNLEKNRNISLQLEKKGQLKGTRKLKEKCSVM  200 (200)
Q Consensus       165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  200 (200)
                      |++|.+.+.++.....   ....+++++++.+|+||
T Consensus       157 ~~~l~~~~~~~~~~~~---~~~~~~~kk~~~~c~i~  189 (189)
T 4dsu_A          157 FYTLVREIRKHKEKMS---KDGKKKKKKSKTKCVIM  189 (189)
T ss_dssp             HHHHHHHHHHHHHHHH---HCSSTTCCC--------
T ss_pred             HHHHHHHHHHhhhhcc---cccccccccccceeeeC
Confidence            9999999876654332   23334444556778875

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=8.8e-36  Score=213.03  Aligned_cols=169  Identities=34%  Similarity=0.565  Sum_probs=150.8

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +.+.++|+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            45679999999999999999999999888778888887776667777888899999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++++.++..+..|+..+.....    ....|+++|+||+|+.+..+....+...+....+++++++||++|.|+++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  166 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKE----DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK  166 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTT----CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence            99999999999999999988887662    35789999999999988777777778888888899999999999999999


Q ss_pred             HHHHHHHHHhccc
Q psy8700         164 LFAELLNLEKNRN  176 (200)
Q Consensus       164 ~~~~i~~~~~~~~  176 (200)
                      +|++|.+.+.++.
T Consensus       167 l~~~l~~~i~~~~  179 (206)
T 2bov_A          167 VFFDLMREIRARK  179 (206)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcc
Confidence            9999999887654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.6e-34  Score=206.76  Aligned_cols=174  Identities=29%  Similarity=0.439  Sum_probs=151.2

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA   81 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   81 (200)
                      ..+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            356679999999999999999999999988777777777444 4566678888999999999999999999999999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      +++|+|++++.++..+..|+..+....     ....|+++|+||+|+.+.......+...+....+++++++||++|.|+
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  158 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYA-----TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNV  158 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHS-----CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence            999999999999999999988887765     256899999999999887777777777888888999999999999999


Q ss_pred             HHHHHHHHHHHhccchhHHH
Q psy8700         162 KELFAELLNLEKNRNISLQL  181 (200)
Q Consensus       162 ~~~~~~i~~~~~~~~~~~~~  181 (200)
                      +++|++|.+.+.++......
T Consensus       159 ~~l~~~l~~~i~~~~~~~~~  178 (206)
T 2bcg_Y          159 EDAFLTMARQIKESMSQQNL  178 (206)
T ss_dssp             HHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccc
Confidence            99999999998776655443

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.7e-35  Score=210.01  Aligned_cols=168  Identities=35%  Similarity=0.617  Sum_probs=143.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||+++|.+..+...+.++....+......++..+.+.+|||||++.+..++..++..+|++++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  101 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL  101 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence            45799999999999999999999999988888888876666666667777899999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|++++.++..+..|+..+.....    ....|+++|+||+|+.+.......+...++...+++++++||++|.|++++
T Consensus       102 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  177 (201)
T 3oes_A          102 VYSVTSLHSFQVIESLYQKLHEGHG----KTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI  177 (201)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHC---------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999888876542    356899999999999888888888888899999999999999999999999


Q ss_pred             HHHHHHHHhccc
Q psy8700         165 FAELLNLEKNRN  176 (200)
Q Consensus       165 ~~~i~~~~~~~~  176 (200)
                      |++|.+.+.+..
T Consensus       178 ~~~l~~~i~~~~  189 (201)
T 3oes_A          178 FTKVIQEIARVE  189 (201)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhh
Confidence            999999885543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=4e-34  Score=200.89  Aligned_cols=167  Identities=34%  Similarity=0.593  Sum_probs=151.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ....+||+++|++|||||||+++|.+..+...+.++....+......++..+.+.+|||||++.+..++..++.++|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   94 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   94 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45679999999999999999999999888888888888777777778888899999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc-CCCcHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK-TNHNVK  162 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~-~~~~i~  162 (200)
                      +|+|++++.++..+..|+..+.....    ....|+++|+||+|+.+.+.....+...++...+++++++||+ ++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~  170 (183)
T 3kkq_A           95 IVYSVTDKASFEHVDRFHQLILRVKD----RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD  170 (183)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHT----SSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence            99999999999999999988877653    4678999999999998878888888888999999999999999 999999


Q ss_pred             HHHHHHHHHHhc
Q psy8700         163 ELFAELLNLEKN  174 (200)
Q Consensus       163 ~~~~~i~~~~~~  174 (200)
                      ++|++|.+.+.+
T Consensus       171 ~l~~~l~~~i~~  182 (183)
T 3kkq_A          171 KTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=3.1e-34  Score=201.10  Aligned_cols=170  Identities=36%  Similarity=0.573  Sum_probs=150.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +...+||+++|++|||||||+++|.++.+...+.++....+......++..+.+.+|||||++.+..+...++..+|+++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            34689999999999999999999998888888888888777777778888899999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++++.++..+..|+..+.....    ..+.|+++|+||+|+.+.+.....+...++...+++++++||++|.|+++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  158 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVG----KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVD  158 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC--------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHH
Confidence            99999999999999999988877653    45689999999999988888888888999999999999999999999999


Q ss_pred             HHHHHHHHHhccch
Q psy8700         164 LFAELLNLEKNRNI  177 (200)
Q Consensus       164 ~~~~i~~~~~~~~~  177 (200)
                      +|+++.+.+..++.
T Consensus       159 l~~~l~~~~~~~~~  172 (181)
T 3t5g_A          159 VFRRIILEAEKMDG  172 (181)
T ss_dssp             HHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999998876553

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.9e-34  Score=207.21  Aligned_cols=167  Identities=28%  Similarity=0.501  Sum_probs=142.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|+|||||+++|.++.+...+.++....+...+..++..+.+.+|||||++.+..++..++.++|++++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il   86 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   86 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence            46799999999999999999999998888888888887777677778888999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc--------cCHHHHHHHHHHhCC-cEEEec
Q psy8700          85 VYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENRE--------VSAAEGEAEAKMWGC-HFMETS  154 (200)
Q Consensus        85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~vS  154 (200)
                      |+|++++.++..+. .|+..+....      ++.|++||+||+|+.+...        +...+...+....++ +++++|
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (212)
T 2j0v_A           87 AFSLISKASYENVLKKWMPELRRFA------PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS  160 (212)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC------TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence            99999999999987 6776666543      4689999999999976543        255667777888886 999999


Q ss_pred             ccCCCcHHHHHHHHHHHHhccch
Q psy8700         155 AKTNHNVKELFAELLNLEKNRNI  177 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~~~~~~  177 (200)
                      |++|.|++++|+++.+.+.+...
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          161 SKTQQNVKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             TTTCTTHHHHHHHHHHHHHCC--
T ss_pred             CCCCCCHHHHHHHHHHHHhhhhh
Confidence            99999999999999998876543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=8.1e-34  Score=198.70  Aligned_cols=170  Identities=35%  Similarity=0.577  Sum_probs=150.4

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      +....+||+++|++|||||||+++|.+..+...+.++....+......++..+.+.+|||||++.+..++..++..+|++
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            45678999999999999999999999998878888888776666677788889999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|++++.++..+..|+..+.....    ....|+++|+||+|+.+..+....+...+....+++++++||++|.|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  160 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGKLFTQILRVKD----RDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVD  160 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHT----SSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence            999999999999999999988866552    4668999999999998877777777888888889999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q psy8700         163 ELFAELLNLEKNRN  176 (200)
Q Consensus       163 ~~~~~i~~~~~~~~  176 (200)
                      ++|++|.+.+.+..
T Consensus       161 ~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          161 EAFEQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999886543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.9e-34  Score=198.17  Aligned_cols=168  Identities=83%  Similarity=1.245  Sum_probs=147.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +.+||+++|++|||||||+++|.+..+...+.++.+..+......++..+.+.+|||||++.+..+...++..+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            57999999999999999999999988877788888777777777788888999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|++++.++..+..|+..+.....   ..+..|+++|+||+|+.+..+....+...+....+++++++||++|.|++++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~---~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  158 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKG---DVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF  158 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC------CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhC---CCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHH
Confidence            999999999999999988887653   23568999999999998777777777778888889999999999999999999


Q ss_pred             HHHHHHHhccc
Q psy8700         166 AELLNLEKNRN  176 (200)
Q Consensus       166 ~~i~~~~~~~~  176 (200)
                      ++|.+.+..++
T Consensus       159 ~~l~~~~~~~~  169 (172)
T 2erx_A          159 QELLNLEKRRT  169 (172)
T ss_dssp             HHHHHTCCSSC
T ss_pred             HHHHHHHhhhh
Confidence            99999775543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=8.2e-34  Score=201.29  Aligned_cols=171  Identities=32%  Similarity=0.471  Sum_probs=149.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            45579999999999999999999999888777777776444 45667788889999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|++++.++..+..|+..+.....     ...|+++|+||+|+.+.......+...+....+++++++||++|.|++
T Consensus        93 i~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  167 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQWLQEIDRYAS-----ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE  167 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC-----TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC-----CCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence            999999999999999999988877763     568999999999998888777788888899999999999999999999


Q ss_pred             HHHHHHHHHHhccchhH
Q psy8700         163 ELFAELLNLEKNRNISL  179 (200)
Q Consensus       163 ~~~~~i~~~~~~~~~~~  179 (200)
                      ++|++|.+.+.++....
T Consensus       168 ~l~~~l~~~i~~~~~~~  184 (196)
T 3tkl_A          168 QSFMTMAAEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999987765543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=1.6e-33  Score=194.71  Aligned_cols=165  Identities=34%  Similarity=0.570  Sum_probs=145.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +.+||+++|++|||||||++++.+..+...+.++....+......++..+.+.+|||||++.+..++..++..+|++++|
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            46999999999999999999999988877777877766666677788889999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|++++.++..+..|+..+.....    ....|+++|+||+|+.+..+....+...+....+++++++||++|.|++++|
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  158 (168)
T 1u8z_A           83 FSITEMESFAATADFREQILRVKE----DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVF  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHC----CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcC----CCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            999999999999999988888773    3578999999999998877777777888888889999999999999999999


Q ss_pred             HHHHHHHhc
Q psy8700         166 AELLNLEKN  174 (200)
Q Consensus       166 ~~i~~~~~~  174 (200)
                      +++.+.+.+
T Consensus       159 ~~l~~~i~~  167 (168)
T 1u8z_A          159 FDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1.3e-33  Score=195.14  Aligned_cols=164  Identities=43%  Similarity=0.804  Sum_probs=145.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +.+||+++|++|||||||+++|.++.+...+.++....+......++..+.+.+|||||++.+..++..++.++|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            36899999999999999999999988877788887766666677788889999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHh-CCcEEEecccCCCcHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~~  164 (200)
                      +|++++.++..+..|+..+.....    ....|+++|+||+|+.+.......+...+.... +++++++||++|.|++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKD----TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI  157 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC----CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC----cCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHH
Confidence            999999999999999988887663    467899999999999887777777777777776 789999999999999999


Q ss_pred             HHHHHHHHh
Q psy8700         165 FAELLNLEK  173 (200)
Q Consensus       165 ~~~i~~~~~  173 (200)
                      |++|.+.+.
T Consensus       158 ~~~l~~~i~  166 (167)
T 1c1y_A          158 FYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998763

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1e-33  Score=201.88  Aligned_cols=167  Identities=31%  Similarity=0.415  Sum_probs=146.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .+..+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++..+.+++|||||++.+..+...++..+|++
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            34569999999999999999999999888777777776333 45666788889999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|++++.++..+..|+..+....     ....|+++|+||+|+.+..+....+...++...+++++++||++|.|++
T Consensus       103 i~v~D~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  177 (201)
T 2ew1_A          103 ILTYDITCEESFRCLPEWLREIEQYA-----SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVE  177 (201)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999988887765     2568999999999998777777777788888889999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q psy8700         163 ELFAELLNLEKNR  175 (200)
Q Consensus       163 ~~~~~i~~~~~~~  175 (200)
                      ++|+++.+.+.++
T Consensus       178 ~l~~~l~~~i~~~  190 (201)
T 2ew1_A          178 KLFLDLACRLISE  190 (201)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.7e-33  Score=194.40  Aligned_cols=164  Identities=49%  Similarity=0.827  Sum_probs=146.5

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      ..+||+++|++|||||||++++.++.+...+.++....+......++..+.+.+|||||++.+..++..++..+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            36899999999999999999999988877777777766667777788888999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|++++.++..+..|+..+.....    ....|+++|+||+|+.+..+....+...+....+++++++||++|.|++++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  157 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKR----YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF  157 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTT----TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHH
Confidence            999999999999999988887663    4578999999999998777777777788888889999999999999999999


Q ss_pred             HHHHHHHh
Q psy8700         166 AELLNLEK  173 (200)
Q Consensus       166 ~~i~~~~~  173 (200)
                      ++|.+.+.
T Consensus       158 ~~l~~~~~  165 (167)
T 1kao_A          158 AEIVRQMN  165 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=1.3e-33  Score=200.14  Aligned_cols=168  Identities=24%  Similarity=0.475  Sum_probs=145.8

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .....+||+++|++|+|||||+++|.+..+...+.++.+..+......++..+.+++|||||++.+..++..++.++|++
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            34567999999999999999999999999888888888877777777888889999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc--cccCHHHHHHHHHHhCCc-EEEecccCC
Q psy8700          83 ILVYSCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETEN--REVSAAEGEAEAKMWGCH-FMETSAKTN  158 (200)
Q Consensus        83 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~vSa~~~  158 (200)
                      ++|+|++++.++..+ ..|...+....      ++.|+++|+||+|+.+.  ......+...++...+++ ++++||++|
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  172 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHYI------DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK  172 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC------TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence            999999999999997 55655555433      56899999999999753  556677788888889987 999999999


Q ss_pred             CcHHHHHHHHHHHHhccc
Q psy8700         159 HNVKELFAELLNLEKNRN  176 (200)
Q Consensus       159 ~~i~~~~~~i~~~~~~~~  176 (200)
                      .|++++|+++.+.+.++.
T Consensus       173 ~gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          173 IGLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             BSHHHHHHHHHHHHHCSC
T ss_pred             CCHHHHHHHHHHHHHhcC
Confidence            999999999999886554

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=3e-33  Score=196.74  Aligned_cols=168  Identities=34%  Similarity=0.567  Sum_probs=148.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +.+.+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            44579999999999999999999999888777888877777666777888889999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++++.++..+..|+..+.....    ....|+++|+||+|+.+..+....+...+....+++++++||+++.|+++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  170 (187)
T 2a9k_A           95 CVFSITEMESFAATADFREQILRVKE----DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK  170 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHC----CTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence            99999999999999999988888773    35789999999999987777777778888888899999999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy8700         164 LFAELLNLEKNR  175 (200)
Q Consensus       164 ~~~~i~~~~~~~  175 (200)
                      +|++|.+.+.++
T Consensus       171 l~~~l~~~i~~~  182 (187)
T 2a9k_A          171 VFFDLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.6e-33  Score=195.20  Aligned_cols=167  Identities=36%  Similarity=0.500  Sum_probs=131.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC--ChhhHhhccccCCEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ--FPAMQRLSISKGHAF   82 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~~~~~~~~~~   82 (200)
                      ...+||+++|++|||||||+++|.+..+...+.+.....+...+..++..+.+.+|||||++.  +..+...++..++++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            457999999999999999999999887654443333344455667788888999999999887  677888899999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|++++.++..+..|+..+.....    ....|+++|+||+|+.+.++....+...++...+++++++||++|.|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  157 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQ----ADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVA  157 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC--------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhc----cCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHH
Confidence            999999999999999998887776531    3568999999999998777777777777888889999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q psy8700         163 ELFAELLNLEKNR  175 (200)
Q Consensus       163 ~~~~~i~~~~~~~  175 (200)
                      ++|++|.+.+..+
T Consensus       158 ~l~~~l~~~~~~~  170 (175)
T 2nzj_A          158 ELFEGVVRQLRLR  170 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=198.34  Aligned_cols=168  Identities=31%  Similarity=0.484  Sum_probs=142.0

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +...+||+++|++|||||||+++|++..+...+.++....+......++..+.+++|||||++.+..+ ..++.++|+++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            45679999999999999999999999988888888888776666777888899999999999988775 56889999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecc-cCCCcHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSA-KTNHNVK  162 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa-~~~~~i~  162 (200)
                      +|||++++.++..+..|+..+......  .....|+++|+||+|+.+.+.+...+...++...+++++++|| ++|.|++
T Consensus        97 lv~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~  174 (187)
T 3c5c_A           97 VVYSVDSRQSFDSSSSYLELLALHAKE--TQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ  174 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHHH--HCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhhc--cCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence            999999999999999998888775310  0145899999999999877777778888888999999999999 8999999


Q ss_pred             HHHHHHHHHHhc
Q psy8700         163 ELFAELLNLEKN  174 (200)
Q Consensus       163 ~~~~~i~~~~~~  174 (200)
                      ++|+.|.+.+.+
T Consensus       175 ~lf~~l~~~i~~  186 (187)
T 3c5c_A          175 HVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999987753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=2.1e-33  Score=194.77  Aligned_cols=166  Identities=31%  Similarity=0.498  Sum_probs=138.5

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .+..+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..+...++..+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            45679999999999999999999999888777777776444 35666778889999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|++++.++..+..|+..+.....     ...|+++|+||+|+.+.......+...++...+++++++||++|.|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLG-----NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIE  157 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHG-----GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC-----CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence            999999999999999999888776652     558999999999998877777777888888889999999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy8700         163 ELFAELLNLEKN  174 (200)
Q Consensus       163 ~~~~~i~~~~~~  174 (200)
                      ++|++|.+.+.+
T Consensus       158 ~l~~~l~~~~~~  169 (170)
T 1z08_A          158 ELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1.3e-33  Score=195.11  Aligned_cols=165  Identities=32%  Similarity=0.470  Sum_probs=123.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +.+||+++|++|||||||++++.+.... ...++.+.++......++..+.+.+|||||++.+..+...++..+|++++|
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            3689999999999999999999875543 333444455556667788889999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|++++.++..+..|+..+.....    ..+.|+++|+||+|+.+..+....+...+....+++++++||++|.|++++|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  155 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQ----TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF  155 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC-------CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Confidence            999999999999999988877542    4678999999999998888888888888888999999999999999999999


Q ss_pred             HHHHHHHhcc
Q psy8700         166 AELLNLEKNR  175 (200)
Q Consensus       166 ~~i~~~~~~~  175 (200)
                      +++.+.+.++
T Consensus       156 ~~l~~~~~~~  165 (166)
T 3q72_A          156 EGVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999987654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.1e-33  Score=203.67  Aligned_cols=168  Identities=23%  Similarity=0.380  Sum_probs=144.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ....+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+|||+|++.+..++..++.++|+++
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  103 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL  103 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence            45679999999999999999999999998888888888777777777888899999999999999999999999999999


Q ss_pred             EEeeCCChhHHHH-HHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-c
Q psy8700          84 LVYSCTSRQSLEE-LRPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-H  149 (200)
Q Consensus        84 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~  149 (200)
                      +|+|++++.++.. +..|+..+....      ++.|+++|+||+|+.+.            +.+...+...++...++ +
T Consensus       104 ~v~d~~~~~s~~~~~~~~~~~i~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  177 (214)
T 3q3j_B          104 LCFDISRPETVDSALKKWRTEILDYC------PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI  177 (214)
T ss_dssp             EEEETTCTHHHHHHHTHHHHHHHHHC------TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence            9999999999998 678877777654      56899999999999763            56777888889999999 9


Q ss_pred             EEEecccCCCc-HHHHHHHHHHHHhccch
Q psy8700         150 FMETSAKTNHN-VKELFAELLNLEKNRNI  177 (200)
Q Consensus       150 ~~~vSa~~~~~-i~~~~~~i~~~~~~~~~  177 (200)
                      |++|||++|.| ++++|+.+.+.+..+..
T Consensus       178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          178 YLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             EEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence            99999999998 99999999998876544

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=196.77  Aligned_cols=169  Identities=33%  Similarity=0.475  Sum_probs=145.2

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA   81 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   81 (200)
                      ..+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            356779999999999999999999999887777777766444 4566678888999999999999999999999999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      +++|+|++++.++..+..|+..+....      ++.|+++|+||+|+.+.......+...+....+++++++||++|.|+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQNC------DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNV  158 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC------TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC------CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence            999999999999999998888887654      56899999999999887777778888888899999999999999999


Q ss_pred             HHHHHHHHHHHhccch
Q psy8700         162 KELFAELLNLEKNRNI  177 (200)
Q Consensus       162 ~~~~~~i~~~~~~~~~  177 (200)
                      +++|++|.+.+.+...
T Consensus       159 ~~l~~~l~~~~~~~~~  174 (181)
T 3tw8_B          159 EEMFNCITELVLRAKK  174 (181)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998865443

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=200.21  Aligned_cols=167  Identities=31%  Similarity=0.397  Sum_probs=139.1

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++.++|+++
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            4469999999999999999999999888777777766443 456667777899999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccCCCcHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKTNHNVK  162 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~~i~  162 (200)
                      +|+|++++.++..+..|+..+....     ..+.|++||+||+|+.+.+.....+...++...++ +++++||++|.|++
T Consensus       107 lv~D~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  181 (201)
T 2hup_A          107 LAYDITKRSSFLSVPHWIEDVRKYA-----GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVE  181 (201)
T ss_dssp             EEEETTBHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHH
Confidence            9999999999999999988887765     26689999999999987777777778888888899 99999999999999


Q ss_pred             HHHHHHHHHHhccc
Q psy8700         163 ELFAELLNLEKNRN  176 (200)
Q Consensus       163 ~~~~~i~~~~~~~~  176 (200)
                      ++|++|.+.+.++.
T Consensus       182 ~l~~~l~~~i~~~~  195 (201)
T 2hup_A          182 EAFLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999886543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=5.6e-34  Score=200.12  Aligned_cols=168  Identities=32%  Similarity=0.507  Sum_probs=117.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++.++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            45679999999999999999999998877666667666433 34566778889999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|++++.++..+..|+..+....     .++.|+++|+||+|+.+.......+...++...+++++++||++|.|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  159 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEHA-----SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVE  159 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHS-----CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence            99999999999999999888887764     2568999999999998777777777888888899999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q psy8700         163 ELFAELLNLEKNRN  176 (200)
Q Consensus       163 ~~~~~i~~~~~~~~  176 (200)
                      ++|++|.+.+.++.
T Consensus       160 ~l~~~l~~~i~~~~  173 (183)
T 2fu5_C          160 NAFFTLARDIKAKM  173 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999886543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=192.87  Aligned_cols=168  Identities=33%  Similarity=0.550  Sum_probs=136.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA   81 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   81 (200)
                      .+..+||+++|++|||||||+++|.+..+. ..+.++.+..+. .....++..+.+.+|||||++.+..++..++.++|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            456799999999999999999999998874 355666664443 344667888999999999999999999999999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      +++|+|++++.++..+..|+..+.....     ...|+++|+||+|+.+.......+...+....+++++++||++|.|+
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-----HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNV  161 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSC-----TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence            9999999999999999999888877652     56899999999999887777777778888888999999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q psy8700         162 KELFAELLNLEKNRN  176 (200)
Q Consensus       162 ~~~~~~i~~~~~~~~  176 (200)
                      +++|+++.+.+.++.
T Consensus       162 ~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          162 DLAFTAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999886554

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=8.2e-33  Score=195.29  Aligned_cols=166  Identities=26%  Similarity=0.490  Sum_probs=144.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            3468999999999999999999999888777777776444 345566777889999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++++.++..+..|+..+....     ....|+++|+||+|+.+.......+...+....+++++++||++|.|+++
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  174 (189)
T 2gf9_A          100 LMYDIANQESFAAVQDWATQIKTYS-----WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQ  174 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            9999999999999999888887764     35689999999999987777777777888888999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy8700         164 LFAELLNLEKNR  175 (200)
Q Consensus       164 ~~~~i~~~~~~~  175 (200)
                      +|++|.+.+.++
T Consensus       175 l~~~l~~~i~~~  186 (189)
T 2gf9_A          175 VFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.3e-33  Score=196.97  Aligned_cols=167  Identities=37%  Similarity=0.617  Sum_probs=147.3

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +...+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++. ...+..++..+|+++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            3567999999999999999999999998877888888776666677788889999999999988 888889999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC-cHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVK  162 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~-~i~  162 (200)
                      +|+|++++.++..+..|+..+.....    ....|+++|+||+|+.+.++....+...++...+++++++||++|. |++
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~  179 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKK----PKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNIT  179 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHT----TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhC----CCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHH
Confidence            99999999999999999988887663    4678999999999998877777778888888889999999999999 999


Q ss_pred             HHHHHHHHHHhcc
Q psy8700         163 ELFAELLNLEKNR  175 (200)
Q Consensus       163 ~~~~~i~~~~~~~  175 (200)
                      ++|++|.+.+.++
T Consensus       180 ~l~~~l~~~i~~~  192 (196)
T 2atv_A          180 EIFYELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1e-32  Score=192.60  Aligned_cols=173  Identities=29%  Similarity=0.415  Sum_probs=142.5

Q ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccC
Q psy8700           1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKG   79 (200)
Q Consensus         1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   79 (200)
                      |++.+..+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+
T Consensus         1 m~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   80 (177)
T 1wms_A            1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS   80 (177)
T ss_dssp             -CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC
T ss_pred             CCCccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcC
Confidence            56778899999999999999999999999888777777776444 45666788889999999999999999999999999


Q ss_pred             CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-HhCCcEEEecccCC
Q psy8700          80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-MWGCHFMETSAKTN  158 (200)
Q Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~  158 (200)
                      |++++|+|++++.++..+..|+..+....... .....|+++|+||+|+. ..+....+...+.. ..+++++++||++|
T Consensus        81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (177)
T 1wms_A           81 DCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK-EPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDA  158 (177)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS-CTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTC
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHcccc-ccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence            99999999999999999999998887766311 12568999999999997 44455666666666 56789999999999


Q ss_pred             CcHHHHHHHHHHHHhcc
Q psy8700         159 HNVKELFAELLNLEKNR  175 (200)
Q Consensus       159 ~~i~~~~~~i~~~~~~~  175 (200)
                      .|++++|+++.+.+.+.
T Consensus       159 ~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          159 TNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             TTHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999987653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=7.1e-33  Score=193.54  Aligned_cols=166  Identities=30%  Similarity=0.402  Sum_probs=144.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .+..+||+++|++|||||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+..++..++.++|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            34579999999999999999999999888777777766444 45566777889999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|++++.++..+..|+..+.....     ...|+++|+||+|+.+.......+...+....+++++++||++|.|++
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  166 (179)
T 1z0f_A           92 LMVYDITRRSTYNHLSSWLTDARNLTN-----PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE  166 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC-----TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             EEEEeCcCHHHHHHHHHHHHHHHHhcC-----CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999888877653     568999999999998777777777788888889999999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy8700         163 ELFAELLNLEKN  174 (200)
Q Consensus       163 ~~~~~i~~~~~~  174 (200)
                      ++|+++.+.+.+
T Consensus       167 ~l~~~l~~~i~~  178 (179)
T 1z0f_A          167 DAFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhh
Confidence            999999987743

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=5.1e-33  Score=197.40  Aligned_cols=169  Identities=31%  Similarity=0.446  Sum_probs=139.3

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChh-hHhhccccCCE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPA-MQRLSISKGHA   81 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~   81 (200)
                      ++..+||+++|++|||||||+++|.+......+.++.+ ..+...+.+++..+.+.+|||+|++.+.. +...++..+|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            45679999999999999999999975443323334443 44455667788889999999999987765 77888999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      +++|+|++++.++..+..|+..+.....    ....|+++|+||+|+.+.+.+...+...++...+++++++||++|.|+
T Consensus       100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v  175 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPETLLRLRAGRP----HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT  175 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHST----TSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence            9999999999999999999988776552    346899999999999877777777778888888999999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q psy8700         162 KELFAELLNLEKNRN  176 (200)
Q Consensus       162 ~~~~~~i~~~~~~~~  176 (200)
                      +++|+++.+.+.++.
T Consensus       176 ~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          176 RELFEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999886543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=4.2e-33  Score=197.12  Aligned_cols=167  Identities=34%  Similarity=0.461  Sum_probs=142.0

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      ....+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++.++|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   97 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   97 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence            45569999999999999999999999888777677666444 45666788889999999999999999899999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|++++.++..+..|+..+....     ....|+++|+||+|+.+..+....+...++...+++++++||++|.|++
T Consensus        98 i~v~d~~~~~s~~~~~~~l~~i~~~~-----~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (191)
T 2a5j_A           98 LLVYDITRRETFNHLTSWLEDARQHS-----SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE  172 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999988887765     3568999999999998777777777888888899999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q psy8700         163 ELFAELLNLEKNR  175 (200)
Q Consensus       163 ~~~~~i~~~~~~~  175 (200)
                      ++|++|.+.+.++
T Consensus       173 ~l~~~l~~~i~~~  185 (191)
T 2a5j_A          173 EAFINTAKEIYRK  185 (191)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=5.3e-33  Score=195.58  Aligned_cols=164  Identities=20%  Similarity=0.320  Sum_probs=139.5

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      ++...+||+++|++|||||||+++++++.+...+.++ ...+...+.+++..+.+++|||+|++.+.     ++.++|++
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence            4567899999999999999999999999887777777 44455677788888999999999998766     77789999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC--cccccCHHHHHHHHHHhC-CcEEEecccCCC
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET--ENREVSAAEGEAEAKMWG-CHFMETSAKTNH  159 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~  159 (200)
                      ++|||++++.++..+..|+..+.....    ....|+++|+||+|+.  ....+...+...++...+ ++|+++||++|.
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  165 (184)
T 3ihw_A           90 VFVFSLEDEISFQTVYNYFLRLCSFRN----ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL  165 (184)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTTSC----GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence            999999999999999998888776542    3568999999999994  455667777888888886 799999999999


Q ss_pred             cHHHHHHHHHHHHhccc
Q psy8700         160 NVKELFAELLNLEKNRN  176 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~~~  176 (200)
                      |++++|+++.+.+.+++
T Consensus       166 gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          166 NVERVFQDVAQKVVALR  182 (184)
T ss_dssp             THHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999876543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=5.8e-33  Score=192.42  Aligned_cols=165  Identities=32%  Similarity=0.443  Sum_probs=131.5

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCc-ccceeEEEEeCCcEEEEEEEeCCCCCCChh-hHhhccccCCEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSHQFPA-MQRLSISKGHAFIL   84 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~   84 (200)
                      .+||+++|++|||||||+++|.+......+.++. ...+...+..++..+.+.+|||||++.+.. +...++.++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            5899999999999999999998766544433333 345556677788889999999999988765 77778889999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|+++++++..+..|+..+.....    ..+.|+++|+||+|+.+.......+...++...+++++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  157 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRP----HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  157 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHST----TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhccc----CCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHH
Confidence            9999999999999999998887662    347899999999999888888888888899999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q psy8700         165 FAELLNLEKNR  175 (200)
Q Consensus       165 ~~~i~~~~~~~  175 (200)
                      |+++.+.+..+
T Consensus       158 ~~~l~~~i~~~  168 (169)
T 3q85_A          158 FEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999987543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=8.5e-33  Score=193.64  Aligned_cols=167  Identities=33%  Similarity=0.462  Sum_probs=144.4

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      +...+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999888777767766444 45666777788999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|++++.++..+..|+..+....     .+..|+++|+||+|+.+..+....+...+....+++++++||++|.|++
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQG-----NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVK  163 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHS-----CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence            99999999999999999998888765     2568999999999998777777777888888889999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q psy8700         163 ELFAELLNLEKNR  175 (200)
Q Consensus       163 ~~~~~i~~~~~~~  175 (200)
                      ++|++|.+.+...
T Consensus       164 ~l~~~l~~~~~~~  176 (181)
T 2efe_B          164 EIFYEIARRLPRV  176 (181)
T ss_dssp             HHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999977543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=5.1e-33  Score=195.64  Aligned_cols=168  Identities=30%  Similarity=0.369  Sum_probs=146.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .+..+||+++|++|||||||+++|.+..+...+.++.+.. ....+..++..+.+.+|||||++.+..++..++.++|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            3557999999999999999999999988877777776633 345666777778999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|++++.++..+..|+..+....     ....|+++|+||+|+.+.......+...++...+++++++||++|.|++
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  161 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARMLA-----SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVE  161 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence            99999999999999999988877765     2568999999999998777777777788888889999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q psy8700         163 ELFAELLNLEKNRN  176 (200)
Q Consensus       163 ~~~~~i~~~~~~~~  176 (200)
                      ++|+++.+.+.++.
T Consensus       162 ~l~~~l~~~~~~~~  175 (186)
T 2bme_A          162 EAFVQCARKILNKI  175 (186)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999886543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=5.6e-33  Score=192.20  Aligned_cols=164  Identities=32%  Similarity=0.457  Sum_probs=143.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..+...++..+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            4679999999999999999999999888777777776433 456667777889999999999998888999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++++.++..+..|+..+....      .+.|+++|+||+|+.+..+....+...+....+++++++||+++.|+++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  156 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV------GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSE  156 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH------CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC------CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Confidence            9999999999999999888887765      4589999999999987777677777888888899999999999999999


Q ss_pred             HHHHHHHHHhc
Q psy8700         164 LFAELLNLEKN  174 (200)
Q Consensus       164 ~~~~i~~~~~~  174 (200)
                      +|++|.+.+.+
T Consensus       157 l~~~l~~~~~~  167 (168)
T 1z2a_A          157 VFKYLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999987754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=6.8e-33  Score=197.46  Aligned_cols=166  Identities=28%  Similarity=0.462  Sum_probs=135.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ....+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++.+..++..++.++|+++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   96 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL   96 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence            45679999999999999999999999888777888887666667777888899999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-c
Q psy8700          84 LVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-H  149 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~  149 (200)
                      +|+|++++.++..+. .|+..+....      +..|+++|+||+|+.+.            ......+...++...++ +
T Consensus        97 ~v~d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (201)
T 2q3h_A           97 LCFSVVSPSSFQNVSEKWVPEIRCHC------PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAAS  170 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC------SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcE
Confidence            999999999999987 6776666643      46899999999999753            34556667778888887 9


Q ss_pred             EEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         150 FMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       150 ~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ++++||++|.|++++|+++.+.+.+.
T Consensus       171 ~~~~Sa~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          171 YIECSALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999987544

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=5.4e-33  Score=192.53  Aligned_cols=164  Identities=32%  Similarity=0.462  Sum_probs=142.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+|||||++.+..++..++..+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            4579999999999999999999999888777777766444 445666777899999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++++.++..+..|+..+....     .+..|+++|+||+|+.+.......+...+....+++++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  158 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQA-----SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            9999999999999999988887765     35789999999999987766667777788888899999999999999999


Q ss_pred             HHHHHHHHHh
Q psy8700         164 LFAELLNLEK  173 (200)
Q Consensus       164 ~~~~i~~~~~  173 (200)
                      +|++|.+.+.
T Consensus       159 l~~~i~~~~~  168 (170)
T 1r2q_A          159 IFMAIAKKLP  168 (170)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=6.5e-33  Score=192.11  Aligned_cols=162  Identities=35%  Similarity=0.500  Sum_probs=141.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|++|||||||++++.+..+...+.++.+..+ ......++..+.+.+|||||++.+..++..++.++|++++|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence            58999999999999999999999888777777776444 45566677888999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc---cccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN---REVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      +|++++.++..+..|+..+....     ..+.|+++|+||+|+.+.   .+....+...++...+++++++||++|.|++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (170)
T 1ek0_A           83 YDVTKPQSFIKARHWVKELHEQA-----SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVN  157 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred             EecCChHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999988887765     256899999999999765   5566677778888889999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy8700         163 ELFAELLNLEK  173 (200)
Q Consensus       163 ~~~~~i~~~~~  173 (200)
                      ++|++|.+.+.
T Consensus       158 ~l~~~l~~~i~  168 (170)
T 1ek0_A          158 DVFLGIGEKIP  168 (170)
T ss_dssp             HHHHHHHTTSC
T ss_pred             HHHHHHHHHHh
Confidence            99999988664

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=2e-32  Score=191.37  Aligned_cols=165  Identities=22%  Similarity=0.325  Sum_probs=138.1

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||+++|.++.+.. +.++.+..+...+..++..+.+++|||||++.     ..++.++|++++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            467999999999999999999999988866 67777766677777888889999999999887     457788999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC--cccccCHHHHHHHHHHh-CCcEEEecccCCCcH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET--ENREVSAAEGEAEAKMW-GCHFMETSAKTNHNV  161 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i  161 (200)
                      |+|++++.++..+..|+..+......  ..+..|+++|+||+|+.  ..+.....+...++... +++++++||++|.|+
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~--~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  156 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGE--GRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV  156 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCS--SSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence            99999999999999988777776531  12568999999999994  34556666777777765 689999999999999


Q ss_pred             HHHHHHHHHHHhccch
Q psy8700         162 KELFAELLNLEKNRNI  177 (200)
Q Consensus       162 ~~~~~~i~~~~~~~~~  177 (200)
                      +++|+++.+.+.+...
T Consensus       157 ~~lf~~l~~~~~~~~~  172 (178)
T 2iwr_A          157 DRVFQEVAQKVVTLRK  172 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998865433

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=5.3e-33  Score=194.21  Aligned_cols=171  Identities=29%  Similarity=0.319  Sum_probs=143.1

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCC-cEEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNK-NICTLQITDTTGSHQFPAMQRLSISKGH   80 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~   80 (200)
                      ++...+||+++|++|||||||+++|.+..+...+.++.+ +.....+..++ ..+.+.+|||||++.+..++..++.++|
T Consensus         2 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   81 (178)
T 2hxs_A            2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQ   81 (178)
T ss_dssp             CCCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCS
T ss_pred             CCCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCC
Confidence            356789999999999999999999999887666677775 34445566665 5689999999999999999999999999


Q ss_pred             EEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC
Q psy8700          81 AFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH  159 (200)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  159 (200)
                      ++++|+|++++.++..+..|+..+.....   .....| +++|+||+|+.+.......+...+....+++++++||++|.
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (178)
T 2hxs_A           82 GVLLVYDITNYQSFENLEDWYTVVKKVSE---ESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGD  158 (178)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHH---HHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhc---ccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            99999999999999999888887776431   011345 89999999998777777777788888889999999999999


Q ss_pred             cHHHHHHHHHHHHhccc
Q psy8700         160 NVKELFAELLNLEKNRN  176 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~~~  176 (200)
                      |++++|++|.+.+.+..
T Consensus       159 gi~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          159 SVFLCFQKVAAEILGIK  175 (178)
T ss_dssp             THHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHhhh
Confidence            99999999999886543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2e-32  Score=193.97  Aligned_cols=162  Identities=25%  Similarity=0.477  Sum_probs=142.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      ..+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++++..++..++.++|++++|
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   96 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC   96 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence            56899999999999999999999998888888888777766777788889999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cEE
Q psy8700          86 YSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HFM  151 (200)
Q Consensus        86 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~  151 (200)
                      +|++++.++..+. .|+..+....      ++.|+++|+||+|+.+.            +.+...+...++...++ +++
T Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (194)
T 2atx_A           97 FSVVNPASFQNVKEEWVPELKEYA------PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV  170 (194)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHS------TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence            9999999999987 6767676653      46899999999999764            34566677788888887 999


Q ss_pred             EecccCCCcHHHHHHHHHHHHh
Q psy8700         152 ETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       152 ~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      ++||++|.|++++|++|.+.+.
T Consensus       171 ~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          171 ECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EeeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=1.3e-32  Score=190.72  Aligned_cols=164  Identities=31%  Similarity=0.482  Sum_probs=143.8

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ...+||+++|++|||||||+++|.+..+...+.++.+..+ ......++....+.+|||||++.+..+...++..+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            4579999999999999999999999888777777776444 445667778899999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++++.++..+..|+..+....     .+..|+++|+||+|+.+..+....+...+....+++++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  158 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHG-----PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-----CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence            9999999999999988888887764     36789999999999988777777777888888899999999999999999


Q ss_pred             HHHHHHHHHh
Q psy8700         164 LFAELLNLEK  173 (200)
Q Consensus       164 ~~~~i~~~~~  173 (200)
                      +|++|.+.+.
T Consensus       159 l~~~i~~~i~  168 (170)
T 1z0j_A          159 LFIEISRRIP  168 (170)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHHh
Confidence            9999998763

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=1.1e-32  Score=197.07  Aligned_cols=175  Identities=23%  Similarity=0.377  Sum_probs=142.9

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccc-ceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      ....+||+++|++|||||||+++|.+..+...+.++.+. .....+..++..+.+.+|||||++.+..++..++..+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            567899999999999999999999998887777777653 3345666677788999999999999888889999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-HhCCcEEEecccCCCcH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNV  161 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i  161 (200)
                      ++|+|++++.++..+..|+..+....... .....|+++|+||+|+. .......+...+.. ..+++++++||++|.|+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPR-DPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCS-SGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccc-cCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            99999999999999999888877765210 12458999999999997 34445555666665 56789999999999999


Q ss_pred             HHHHHHHHHHHhccchhHH
Q psy8700         162 KELFAELLNLEKNRNISLQ  180 (200)
Q Consensus       162 ~~~~~~i~~~~~~~~~~~~  180 (200)
                      +++|++|.+.+.++....+
T Consensus       163 ~~l~~~l~~~~~~~~~~~~  181 (207)
T 1vg8_A          163 EQAFQTIARNALKQETEVE  181 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccc
Confidence            9999999998876655443

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=7.6e-33  Score=193.41  Aligned_cols=165  Identities=33%  Similarity=0.511  Sum_probs=144.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ...+||+++|++|||||||+++|++..+...+.++.+ ......+..++..+.+.+|||||++.+...+..++.++|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            3569999999999999999999999888777777776 344556667888889999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++++.++..+..|+..+.....     ...|+++|+||+|+.+..+....+...+....+++++++||++|.|+++
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  166 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERG-----SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  166 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHT-----TSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-----CCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            99999999999999999988877652     5689999999999988777777777888888899999999999999999


Q ss_pred             HHHHHHHHHhc
Q psy8700         164 LFAELLNLEKN  174 (200)
Q Consensus       164 ~~~~i~~~~~~  174 (200)
                      +|++|.+.+.+
T Consensus       167 l~~~l~~~~~~  177 (179)
T 2y8e_A          167 LFRRVAAALPG  177 (179)
T ss_dssp             HHHHHHHTCC-
T ss_pred             HHHHHHHHHhh
Confidence            99999987643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=2e-32  Score=195.32  Aligned_cols=166  Identities=28%  Similarity=0.501  Sum_probs=145.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +..+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++.++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            4569999999999999999999999888777777776444 345666778899999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++++.++..+..|+..+....     ....|+++|+||+|+.+.......+...++...+++++++||++|.|+++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
T 1zbd_A           86 LMYDITNEESFNAVQDWSTQIKTYS-----WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQ  160 (203)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-----CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHH
Confidence            9999999999999999888887655     35689999999999988777777778888888899999999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy8700         164 LFAELLNLEKNR  175 (200)
Q Consensus       164 ~~~~i~~~~~~~  175 (200)
                      +|++|.+.+.++
T Consensus       161 l~~~l~~~i~~~  172 (203)
T 1zbd_A          161 TFERLVDVICEK  172 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=194.53  Aligned_cols=167  Identities=28%  Similarity=0.378  Sum_probs=143.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .+..+||+++|++|||||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+..++..++.++|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            34569999999999999999999999888777777765433 34556677889999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|++++.++..+..|+..+....     ....|+++|+||+|+.+.......+...+....+++++++||++|.|++
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDHA-----EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVE  176 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTTS-----CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-----CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999888887776543     3568999999999998776667777788888889999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q psy8700         163 ELFAELLNLEKNR  175 (200)
Q Consensus       163 ~~~~~i~~~~~~~  175 (200)
                      ++|++|.+.+.++
T Consensus       177 ~l~~~l~~~i~~~  189 (193)
T 2oil_A          177 LAFETVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=6.8e-33  Score=194.93  Aligned_cols=165  Identities=26%  Similarity=0.420  Sum_probs=140.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +...+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            56789999999999999999999999888777888887666666677888899999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhC-Cc
Q psy8700          84 LVYSCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWG-CH  149 (200)
Q Consensus        84 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~  149 (200)
                      +|+|++++.++..+ ..|...+....      +..|+++|+||+|+.+.            +.+...+...++...+ ++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFC------PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  157 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC------TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC------CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence            99999999999998 56766666543      56899999999999752            3456667777887777 69


Q ss_pred             EEEeccc-CCCcHHHHHHHHHHHHhc
Q psy8700         150 FMETSAK-TNHNVKELFAELLNLEKN  174 (200)
Q Consensus       150 ~~~vSa~-~~~~i~~~~~~i~~~~~~  174 (200)
                      |+++||+ ++.|++++|+.+.+.+..
T Consensus       158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          158 YIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            9999999 689999999999987753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=195.49  Aligned_cols=166  Identities=31%  Similarity=0.492  Sum_probs=133.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      ....+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            34579999999999999999999999887777777766433 45667788889999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc------ccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE------NREVSAAEGEAEAKMWGCHFMETSAK  156 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~vSa~  156 (200)
                      ++|+|++++.++..+..|+..+....     ....|++||+||+|+.+      ...+...+...++...+++++++||+
T Consensus       105 ilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~  179 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIREWVDMIEDAA-----HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAK  179 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHC--------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTT
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCC
Confidence            99999999999999999888877655     25689999999999963      34556667778888889999999999


Q ss_pred             CCCcHHHHHHHHHHHHhc
Q psy8700         157 TNHNVKELFAELLNLEKN  174 (200)
Q Consensus       157 ~~~~i~~~~~~i~~~~~~  174 (200)
                      +|.|++++|++|.+.+.+
T Consensus       180 ~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          180 DGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TCTTHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999998754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=3.2e-32  Score=192.62  Aligned_cols=168  Identities=26%  Similarity=0.423  Sum_probs=144.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee--EEEEeCCc---------EEEEEEEeCCCCCCChhhH
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKN---------ICTLQITDTTGSHQFPAMQ   72 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~D~~G~~~~~~~~   72 (200)
                      .+..+||+++|++|||||||+++|.+..+...+.++.+..+.  .....++.         .+.+.+|||||++.+..+.
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            455799999999999999999999998887777777764443  34445554         7899999999999999999


Q ss_pred             hhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEE
Q psy8700          73 RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFME  152 (200)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (200)
                      ..++.++|++++|+|++++.++..+..|+..+.....    ....|+++|+||+|+.+.......+...+....++++++
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY----SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFE  163 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS----SSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEE
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEE
Confidence            9999999999999999999999999999888877652    356899999999999877777777778888888999999


Q ss_pred             ecccCCCcHHHHHHHHHHHHhcc
Q psy8700         153 TSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       153 vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      +||+++.|++++|++|.+.+.++
T Consensus       164 ~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          164 TSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988544

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=6.9e-32  Score=186.06  Aligned_cols=163  Identities=34%  Similarity=0.644  Sum_probs=143.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      .+||+++|++|||||||++++.+..+...+.++....+......++..+.+.+|||||++.+...+..++..+|++++|+
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   82 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   82 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence            58999999999999999999999888777777777666666777888899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |++++.++..+..|+..+.....    ..+.|+++|+||+|+.+ ..........+....+++++++||++|.|++++++
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~----~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  157 (166)
T 2ce2_X           83 AINNTKSFEDIHQYREQIKRVKD----SDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY  157 (166)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHHT----CSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC----CCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999988887763    34689999999999976 44456677778888899999999999999999999


Q ss_pred             HHHHHHhc
Q psy8700         167 ELLNLEKN  174 (200)
Q Consensus       167 ~i~~~~~~  174 (200)
                      +|.+.+.+
T Consensus       158 ~l~~~~~~  165 (166)
T 2ce2_X          158 TLVREIRQ  165 (166)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.5e-33  Score=196.04  Aligned_cols=166  Identities=31%  Similarity=0.462  Sum_probs=136.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .+..+||+++|++|||||||+++|.+..+...+.++.+.. ....+..++..+.+.+|||||++.+..++..++.++|++
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i  102 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI  102 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            4557999999999999999999999988776777776533 345566777788999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHh-CCcEEEecccCCCcH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNV  161 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~~i  161 (200)
                      ++|+|++++.++..+..|+..+....     ....|++||+||+|+.+..+....+...+.... +++++++||++|.|+
T Consensus       103 ilV~D~~~~~s~~~~~~~~~~i~~~~-----~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  177 (192)
T 2il1_A          103 ILVYDITKKETFDDLPKWMKMIDKYA-----SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV  177 (192)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence            99999999999999998888777665     356899999999999877777767777777663 789999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy8700         162 KELFAELLNLEKN  174 (200)
Q Consensus       162 ~~~~~~i~~~~~~  174 (200)
                      +++|++|.+.+.+
T Consensus       178 ~~l~~~l~~~i~~  190 (192)
T 2il1_A          178 DEIFLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1e-32  Score=191.19  Aligned_cols=164  Identities=34%  Similarity=0.553  Sum_probs=136.4

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            568999999999999999999999888777777776444 4556667778899999999999988888999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|++++.++..+..|+..+....     ....|+++|+||+|+ ........+...+.+..+++++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  155 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHA-----NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEI  155 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            999999999999999988887765     256899999999999 44445566677788888999999999999999999


Q ss_pred             HHHHHHHHhcc
Q psy8700         165 FAELLNLEKNR  175 (200)
Q Consensus       165 ~~~i~~~~~~~  175 (200)
                      |++|.+.+.++
T Consensus       156 ~~~l~~~~~~~  166 (170)
T 1g16_A          156 FFTLAKLIQEK  166 (170)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.8e-33  Score=195.66  Aligned_cols=166  Identities=30%  Similarity=0.492  Sum_probs=144.0

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .+..+||+++|++|||||||+++|++..+...+.++.+..+ ......++..+.+.+|||||++.+..++..++..+|++
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            35579999999999999999999999887777777776544 34566677889999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|++++.++..+..|+..+....     ....|+++|+||+|+.+.......+...+....+++++++||++|.|++
T Consensus       100 ilV~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  174 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKKWVKELKEHG-----PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE  174 (192)
T ss_dssp             EEEEETTCTHHHHHHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-----CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence            99999999999999999988887765     3568999999999998766677777888888889999999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy8700         163 ELFAELLNLEKN  174 (200)
Q Consensus       163 ~~~~~i~~~~~~  174 (200)
                      ++|++|.+.+.+
T Consensus       175 ~l~~~l~~~i~~  186 (192)
T 2fg5_A          175 ELFQGISRQIPP  186 (192)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999997754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-32  Score=195.99  Aligned_cols=166  Identities=35%  Similarity=0.510  Sum_probs=134.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCC--CCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC-ChhhHhhccccCCE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ-FPAMQRLSISKGHA   81 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~   81 (200)
                      ...+||+++|++|||||||+++|.+..  +...+.++..+.+...+.+++..+.+.+|||+|++. +..+...+++.+++
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            456999999999999999999998643  333333333344556677788889999999999876 55677788889999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      +++|||++++.++..+..|+..+.....    ....|+++|+||+|+.+.+.+...+...++...++++++|||++|.||
T Consensus       115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~----~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v  190 (211)
T 2g3y_A          115 YLIVYSITDRASFEKASELRIQLRRARQ----TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV  190 (211)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGG----GTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            9999999999999999988877765331    246899999999999877777767777778888999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy8700         162 KELFAELLNLEKN  174 (200)
Q Consensus       162 ~~~~~~i~~~~~~  174 (200)
                      +++|+++.+.+..
T Consensus       191 ~elf~~l~~~i~~  203 (211)
T 2g3y_A          191 KELFEGIVRQVRL  203 (211)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999997743

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-32  Score=198.50  Aligned_cols=171  Identities=27%  Similarity=0.358  Sum_probs=138.8

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +..+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            4569999999999999999999999888777777776444 345667787889999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++++.++..+..|+..+....     ....|++||+||+|+.+..++...+...+....+++++++||+++.|+++
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~-----~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  165 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENA-----DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDK  165 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHC-----C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-----CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999988887764     25689999999999987777777777888888899999999999999999


Q ss_pred             HHHHHHHHHhccchhHH
Q psy8700         164 LFAELLNLEKNRNISLQ  180 (200)
Q Consensus       164 ~~~~i~~~~~~~~~~~~  180 (200)
                      +|++|.+.+.++....+
T Consensus       166 l~~~l~~~i~~~~~~~~  182 (223)
T 3cpj_B          166 AFEELINTIYQKVSKHQ  182 (223)
T ss_dssp             HHHHHHHHHTTCC----
T ss_pred             HHHHHHHHHHHHhhhcc
Confidence            99999998876654443

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.6e-32  Score=193.76  Aligned_cols=165  Identities=28%  Similarity=0.422  Sum_probs=140.8

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCCh-hhHhhccccCCEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFP-AMQRLSISKGHAF   82 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~~   82 (200)
                      ...+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+. .++..++.++|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            4569999999999999999999999888777777776443 4566677888999999999998887 7888899999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCC---C
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTN---H  159 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~---~  159 (200)
                      ++|+|++++.++..+..|+..+.....    ..+.|+++|+||+|+.+..+....+...++...+++++++||+++   .
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~  173 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQHLL----ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND  173 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCC----CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence            999999999999999999888887652    466899999999999877777777788888888999999999999   9


Q ss_pred             cHHHHHHHHHHHHh
Q psy8700         160 NVKELFAELLNLEK  173 (200)
Q Consensus       160 ~i~~~~~~i~~~~~  173 (200)
                      |+.++|++|.+.+.
T Consensus       174 ~i~~l~~~l~~~i~  187 (189)
T 1z06_A          174 HVEAIFMTLAHKLK  187 (189)
T ss_dssp             CHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-33  Score=198.71  Aligned_cols=166  Identities=27%  Similarity=0.491  Sum_probs=146.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +..+||+++|++|||||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+..+...++..+|+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            4569999999999999999999999887777777776444 456666777889999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++++.++..+..|+..+....     ....|+++|+||+|+.+.+.....+...+....+++++++||++|.|+++
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  175 (191)
T 3dz8_A          101 LMYDITNEESFNAVQDWATQIKTYS-----WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQ  175 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            9999999999999999988887755     36789999999999988877788888888999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy8700         164 LFAELLNLEKNR  175 (200)
Q Consensus       164 ~~~~i~~~~~~~  175 (200)
                      +|++|.+.+.++
T Consensus       176 l~~~l~~~i~~~  187 (191)
T 3dz8_A          176 AFERLVDAICDK  187 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=2e-32  Score=192.47  Aligned_cols=165  Identities=28%  Similarity=0.478  Sum_probs=141.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||+++|.++.+...+.++....+......++..+.+++|||||++.+..++..++..+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            45799999999999999999999998887788888877776677778888999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cE
Q psy8700          85 VYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HF  150 (200)
Q Consensus        85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~  150 (200)
                      |+|++++.++..+. .|+..+....      +..|+++|+||+|+.+.            ..+...+...++...++ ++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  156 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHC------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  156 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS------TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhC------CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence            99999999999987 5666666543      46899999999999754            34455666777788887 99


Q ss_pred             EEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         151 METSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      +++||++|.|++++|+++.+.+.+.
T Consensus       157 ~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          157 LECSALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             EEecCCCccCHHHHHHHHHHHHhcc
Confidence            9999999999999999999987543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=197.71  Aligned_cols=165  Identities=27%  Similarity=0.493  Sum_probs=122.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+|||||++.+..++..++.++|++++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            45699999999999999999999998887777787776666667778888999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhCC-cE
Q psy8700          85 VYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWGC-HF  150 (200)
Q Consensus        85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~  150 (200)
                      |+|++++.++..+. .|...+....      +..|+++|+||+|+....            .+...+...+++..++ ++
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  185 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFC------KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY  185 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC------SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence            99999999999987 5666665543      568999999999997653            4455666777888887 99


Q ss_pred             EEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         151 METSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      +++||++|.|++++|++|.+.+.+.
T Consensus       186 ~~~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          186 LECSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999988654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.3e-33  Score=198.49  Aligned_cols=167  Identities=30%  Similarity=0.400  Sum_probs=135.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +..+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            4569999999999999999999999887777777766433 456667777889999999998888888888999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++++.++..+..|+..+.....     ...|+++|+||+|+.+.......+...++...+++++++||++|.|+++
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  177 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLAS-----PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  177 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTC-----TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-----CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999888877652     5689999999999987777777777888888899999999999999999


Q ss_pred             HHHHHHHHHhccc
Q psy8700         164 LFAELLNLEKNRN  176 (200)
Q Consensus       164 ~~~~i~~~~~~~~  176 (200)
                      +|++|.+.+.++.
T Consensus       178 l~~~l~~~i~~~~  190 (200)
T 2o52_A          178 AFLKCARTILNKI  190 (200)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999886543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1.2e-31  Score=189.41  Aligned_cols=164  Identities=36%  Similarity=0.670  Sum_probs=133.5

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      ..+||+++|.+|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++.+..++..++..+|++++|
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   99 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   99 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence            45899999999999999999999988877777777766666777788889999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|++++.++..+..|+..+.....    ....|+++|+||+|+.+ ......+...+....+++++++||+++.|++++|
T Consensus       100 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  174 (190)
T 3con_A          100 FAINNSKSFADINLYREQIKRVKD----SDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF  174 (190)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHT----CSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999888877663    35689999999999976 4455667777888889999999999999999999


Q ss_pred             HHHHHHHhc
Q psy8700         166 AELLNLEKN  174 (200)
Q Consensus       166 ~~i~~~~~~  174 (200)
                      ++|.+.+.+
T Consensus       175 ~~l~~~~~~  183 (190)
T 3con_A          175 YTLVREIRQ  183 (190)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=2e-32  Score=195.81  Aligned_cols=165  Identities=26%  Similarity=0.420  Sum_probs=139.8

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ....+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+.+|||||++.+..++..++.++|+++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            35679999999999999999999999988877888877666666677788899999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhC-Cc
Q psy8700          84 LVYSCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWG-CH  149 (200)
Q Consensus        84 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~  149 (200)
                      +|+|++++.++..+ ..|...+....      +..|+++|+||+|+.+.            +.+...+...+++..+ ++
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  178 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEFC------PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  178 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC------TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC------CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence            99999999999998 56777676543      56899999999999752            3455666777887877 69


Q ss_pred             EEEeccc-CCCcHHHHHHHHHHHHhc
Q psy8700         150 FMETSAK-TNHNVKELFAELLNLEKN  174 (200)
Q Consensus       150 ~~~vSa~-~~~~i~~~~~~i~~~~~~  174 (200)
                      |+++||+ ++.|++++|+.+.+.+..
T Consensus       179 ~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          179 YIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            9999999 689999999999987753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=7.4e-32  Score=192.23  Aligned_cols=163  Identities=28%  Similarity=0.465  Sum_probs=139.4

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||++++.+..+...+.++....+...+..++..+.+.+|||||++.+..++..++.++|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            45689999999999999999999999888788888876666667778888999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cE
Q psy8700          85 VYSCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HF  150 (200)
Q Consensus        85 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~  150 (200)
                      |+|++++.++..+ ..|...+....      +..|+++|+||+|+.+.            ......+...++...++ ++
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  176 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFC------PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY  176 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS------TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence            9999999999998 45666555543      46899999999999765            33455667777778887 89


Q ss_pred             EEecccCCCcHHHHHHHHHHHHh
Q psy8700         151 METSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      +++||++|.|++++|++|.+.+.
T Consensus       177 ~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          177 LECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999998764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=7.1e-32  Score=188.93  Aligned_cols=172  Identities=26%  Similarity=0.427  Sum_probs=128.3

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeC-CcEEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCN-KNICTLQITDTTGSHQFPAMQRLSISKGH   80 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   80 (200)
                      .+...+||+++|++|||||||+++|++..+...+.++.+ ......+..+ +..+.+.+|||||++.+...+..++..+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            456789999999999999999999999888777777765 3334455555 55689999999999999999999999999


Q ss_pred             EEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc-cccCHHHHHHHHH-HhCCcEEEecccCC
Q psy8700          81 AFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN-REVSAAEGEAEAK-MWGCHFMETSAKTN  158 (200)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~-~~~~~~~~vSa~~~  158 (200)
                      ++++|+|++++.++..+..|+..+....... .....|+++|+||+|+... ......+...+.. ..+.+++++||++|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVN-SPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNA  162 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCS-CTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTT
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhccc-CcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCC
Confidence            9999999999999999999988887765311 1356899999999999643 3445566666666 46679999999999


Q ss_pred             CcHHHHHHHHHHHHhcc
Q psy8700         159 HNVKELFAELLNLEKNR  175 (200)
Q Consensus       159 ~~i~~~~~~i~~~~~~~  175 (200)
                      .|++++|++|.+.+.++
T Consensus       163 ~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          163 INVDTAFEEIARSALQQ  179 (182)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999987544

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=6e-33  Score=194.58  Aligned_cols=163  Identities=28%  Similarity=0.520  Sum_probs=124.4

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|+|||||++++..+.+...+.++....+......++..+.+++|||||++.+..++..++.++|++++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            56799999999999999999999998887777777765554444456677889999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc----------cCHHHHHHHHHHhCC-cEEE
Q psy8700          85 VYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENRE----------VSAAEGEAEAKMWGC-HFME  152 (200)
Q Consensus        85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~  152 (200)
                      |+|++++.++..+. .|...+....      +..|+++|+||+|+.+...          ....+...+....++ ++++
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  159 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHYA------PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE  159 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC------TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence            99999999999987 5666666543      4689999999999976544          255667778888887 9999


Q ss_pred             ecccCCCcHHHHHHHHHHHHh
Q psy8700         153 TSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       153 vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      +||++|.|++++|+++.+.+.
T Consensus       160 ~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          160 CSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHS
T ss_pred             EECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1.7e-31  Score=190.40  Aligned_cols=164  Identities=28%  Similarity=0.400  Sum_probs=138.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcE----------------------------
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNI----------------------------   54 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~----------------------------   54 (200)
                      ++..+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            46789999999999999999999999888777777776433 3344444433                            


Q ss_pred             ---------EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700          55 ---------CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK  125 (200)
Q Consensus        55 ---------~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  125 (200)
                               ..+.+|||||++.+..+...++..+|++++|+|++++.++..+..|+..+.....       .|+++|+||
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-------~piilv~NK  156 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-------YIIILVANK  156 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-------CEEEEEEEC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-------CcEEEEEEC
Confidence                     7899999999999999999999999999999999999999999888888776552       899999999


Q ss_pred             CCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      +| .........+...+....+++++++||++|.|+.++|++|.+.+.++
T Consensus       157 ~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          157 ID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             TT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            99 55556666777888888899999999999999999999999987543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-31  Score=191.30  Aligned_cols=164  Identities=28%  Similarity=0.460  Sum_probs=134.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      ..+||+++|++|||||||+++|.+..+...+.++....+......++..+.+.+|||||++.+..++..++.++|++++|
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  103 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC  103 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEE
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEE
Confidence            46899999999999999999999988877777777766666667788889999999999999999999999999999999


Q ss_pred             eeCCChhHHHHH-HHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cEE
Q psy8700          86 YSCTSRQSLEEL-RPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HFM  151 (200)
Q Consensus        86 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~  151 (200)
                      +|++++.++..+ ..|...+....      +..|+++|+||+|+.+.            ..+...+...++...++ +++
T Consensus       104 ~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  177 (207)
T 2fv8_A          104 FSVDSPDSLENIPEKWVPEVKHFC------PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYL  177 (207)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHS------TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEE
Confidence            999999999998 55666665543      56899999999999764            23455566777777887 899


Q ss_pred             EecccCCCcHHHHHHHHHHHHhcc
Q psy8700         152 ETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       152 ~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ++||++|.|++++|++|.+.+..+
T Consensus       178 ~~SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          178 ECSAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999987644

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=1.2e-31  Score=189.84  Aligned_cols=168  Identities=35%  Similarity=0.498  Sum_probs=132.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCC--CCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC-ChhhHhhccccCCE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ-FPAMQRLSISKGHA   81 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~   81 (200)
                      ...+||+++|++|||||||++++.+..  +...+.++..+.+...+.+++..+.+.+|||+|.+. +..+...+++.+++
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            457999999999999999999998632  333333323344456677788888999999999776 45567778888999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      +++|||++++.++.....|+..+.....    ....|+++|+||+|+...+.....+...++...+++|+++||++|.||
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~----~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v  159 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQ----TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNV  159 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTT----TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhC----CCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCH
Confidence            9999999999999999999887776542    356899999999999876666666667777788889999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q psy8700         162 KELFAELLNLEKNRN  176 (200)
Q Consensus       162 ~~~~~~i~~~~~~~~  176 (200)
                      +++|+++.+.+..+.
T Consensus       160 ~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          160 KELFEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999875443

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=3.4e-32  Score=194.43  Aligned_cols=164  Identities=29%  Similarity=0.516  Sum_probs=137.6

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .+.+.+||+++|++|||||||+++++.+.+...+.++....+...+..++..+.+.+|||||++.+..+...++.++|++
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            35668999999999999999999999988887888888777777777888889999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc------------cCHHHHHHHHHHhCC-
Q psy8700          83 ILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENRE------------VSAAEGEAEAKMWGC-  148 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~-  148 (200)
                      ++|+|++++.++..+. .|...+....      +..|+++|+||+|+.+...            ....+...++...++ 
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  179 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV  179 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC------SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCc
Confidence            9999999999999987 5666665543      5689999999999976543            556667777888886 


Q ss_pred             cEEEecccCCCcHHHHHHHHHHHH
Q psy8700         149 HFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       149 ~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      +++++||++|.|++++|+++.+.+
T Consensus       180 ~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          180 KYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHh
Confidence            699999999999999999998754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-31  Score=191.82  Aligned_cols=167  Identities=33%  Similarity=0.535  Sum_probs=141.5

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .+..++|+++|++|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            34579999999999999999999999888777777776444 45666778788999999999999888889999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|++++.++..+..|+..+....     ....|+++|+||+|+ ........+...+....+++++++||++|.|++
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  170 (213)
T 3cph_A           97 ILVYDVTDERTFTNIKQWFKTVNEHA-----NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVN  170 (213)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHT-----TTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-----CCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999888887765     256899999999999 444555666777788889999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q psy8700         163 ELFAELLNLEKNRN  176 (200)
Q Consensus       163 ~~~~~i~~~~~~~~  176 (200)
                      ++|++|.+.+.++.
T Consensus       171 ~l~~~l~~~~~~~~  184 (213)
T 3cph_A          171 EIFFTLAKLIQEKI  184 (213)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999886543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-31  Score=190.07  Aligned_cols=166  Identities=33%  Similarity=0.446  Sum_probs=141.4

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|++++
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            468999999999999999999999888777777766444 4556677888999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|++++.++..+..|+..+....    .....|+++|+||+|+.+ .+....+...+....+++++++||+++.|++++
T Consensus        94 v~d~~~~~s~~~~~~~~~~i~~~~----~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  168 (195)
T 1x3s_A           94 VYDVTRRDTFVKLDNWLNELETYC----TRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCA  168 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCC----SCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhc----CcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            999999999999988877766543    235689999999999943 445566777788888999999999999999999


Q ss_pred             HHHHHHHHhccc
Q psy8700         165 FAELLNLEKNRN  176 (200)
Q Consensus       165 ~~~i~~~~~~~~  176 (200)
                      |++|.+.+.+..
T Consensus       169 ~~~l~~~~~~~~  180 (195)
T 1x3s_A          169 FEELVEKIIQTP  180 (195)
T ss_dssp             HHHHHHHHHTSG
T ss_pred             HHHHHHHHHhhh
Confidence            999999886543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.7e-32  Score=197.83  Aligned_cols=173  Identities=23%  Similarity=0.341  Sum_probs=141.4

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE-EEEe-CCcEEEEEEEeCCCCCCChhhHhhccccC
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISC-NKNICTLQITDTTGSHQFPAMQRLSISKG   79 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   79 (200)
                      +.+...+||+++|++|||||||+++|++..+...+.++.+..... .... ++..+.+.+|||||++.+..+...++..+
T Consensus         6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (218)
T 4djt_A            6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA   85 (218)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence            456678999999999999999999999888777777776654433 2222 33448999999999999888999999999


Q ss_pred             CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC
Q psy8700          80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH  159 (200)
Q Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  159 (200)
                      |++++|+|++++.++..+..|+..+.....     ...|+++|+||+|+.+..+........+....+++++++||++|.
T Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  160 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLARWVKEFQAVVG-----NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAH  160 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHC-----SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTB
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-----CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCC
Confidence            999999999999999999999988888773     558999999999998877777777777778888999999999999


Q ss_pred             cHHHHHHHHHHHHhccchhH
Q psy8700         160 NVKELFAELLNLEKNRNISL  179 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~~~~~~  179 (200)
                      |++++|++|.+.+.++....
T Consensus       161 gv~~l~~~l~~~~~~~~~~~  180 (218)
T 4djt_A          161 NFGLPFLHLARIFTGRPDLI  180 (218)
T ss_dssp             TTTHHHHHHHHHHHCCTTCC
T ss_pred             CHHHHHHHHHHHHhcccccc
Confidence            99999999999987765443

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=3.1e-32  Score=194.76  Aligned_cols=170  Identities=21%  Similarity=0.246  Sum_probs=108.8

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhC--CCCCCcCCCcc-cceeEEEEeCCc--EEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKG--TFRESYIPTIE-DTYRQVISCNKN--ICTLQITDTTGSHQFPAMQRLSISKGH   80 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~--~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~   80 (200)
                      ..+||+++|++|||||||+++|.+.  .+...+.++.+ +.....+..++.  .+.+.+|||||++.+..++..++.++|
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   98 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY   98 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence            4589999999999999999999988  66666777765 444556666776  889999999999999999999999999


Q ss_pred             EEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc-ccccCHHHHHHHHHHhCCcEEEecccC-C
Q psy8700          81 AFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE-NREVSAAEGEAEAKMWGCHFMETSAKT-N  158 (200)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSa~~-~  158 (200)
                      ++++|+|++++.++..+..|+..+......  .....|+++|+||+|+.+ .......+...+....+++++++||++ |
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  176 (208)
T 2yc2_C           99 YAILVFDVSSMESFESCKAWFELLKSARPD--RERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG  176 (208)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHCSC--TTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC----
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhcc--cccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCC
Confidence            999999999999999999998888776520  014689999999999987 667777778888888899999999999 9


Q ss_pred             CcHHHHHHHHHHHHhccch
Q psy8700         159 HNVKELFAELLNLEKNRNI  177 (200)
Q Consensus       159 ~~i~~~~~~i~~~~~~~~~  177 (200)
                      .|++++|++|.+.+.+...
T Consensus       177 ~gi~~l~~~i~~~~~~~~~  195 (208)
T 2yc2_C          177 KDADAPFLSIATTFYRNYE  195 (208)
T ss_dssp             ---CHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHH
Confidence            9999999999998865543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=2.5e-32  Score=196.76  Aligned_cols=167  Identities=27%  Similarity=0.461  Sum_probs=138.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCc----------EEEEEEEeCCCCCCChhhHh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKN----------ICTLQITDTTGSHQFPAMQR   73 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~~~D~~G~~~~~~~~~   73 (200)
                      +..+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++.          .+.+.+|||||++.+..++.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            4569999999999999999999999887666666665333 334445554          68999999999999999999


Q ss_pred             hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEe
Q psy8700          74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMET  153 (200)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v  153 (200)
                      .++..+|++++|+|++++.++..+..|+..+....    .....|++||+||+|+.+.......+...+....+++++++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~----~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  178 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA----YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET  178 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC----TTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence            99999999999999999999998887765544322    12568999999999998777777777888888889999999


Q ss_pred             cccCCCcHHHHHHHHHHHHhcc
Q psy8700         154 SAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ||+++.|++++|++|.+.+.++
T Consensus       179 Sa~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          179 SAATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999988654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.98  E-value=1.8e-31  Score=189.65  Aligned_cols=172  Identities=13%  Similarity=0.166  Sum_probs=128.2

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGH   80 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   80 (200)
                      ++....+||+|+|++|||||||+++|++..+.. .+.++.+.... .+  +...+.+.+|||||++.+..++..++.++|
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   88 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNID   88 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence            345677999999999999999999999988877 66777663322 22  345579999999999999999999999999


Q ss_pred             EEEEEeeCCChhHHHHHHHHHHHHHHHhCC---CCCCCCCcEEEEeeCCCCCcccccCHHH---HHHH-HHHhCCcEEEe
Q psy8700          81 AFILVYSCTSRQSLEELRPIWEVIRETKGG---ANELASIPIMLVGNKCDETENREVSAAE---GEAE-AKMWGCHFMET  153 (200)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~-~~~~~~~~~~v  153 (200)
                      ++++|+|++++.++..+..|+..+......   .......|++||+||+|+.+........   .... ....+++++++
T Consensus        89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (199)
T 4bas_A           89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFAS  168 (199)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEEC
T ss_pred             EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEe
Confidence            999999999999999998888777654210   0001268999999999997653221111   1111 13356789999


Q ss_pred             cccCCCcHHHHHHHHHHHHhccc
Q psy8700         154 SAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      ||++|.|++++|++|.+.+.++.
T Consensus       169 Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          169 NGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             eCCCccCHHHHHHHHHHHHHHHh
Confidence            99999999999999999886543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=2e-33  Score=200.03  Aligned_cols=167  Identities=32%  Similarity=0.499  Sum_probs=133.5

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      .+..+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++.++|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            35579999999999999999999999887766666666444 45666788888999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|+|++++.++..+..|+..+....     ....|+++|+||+|+.+.......+...++...+++++++||++|.|++
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~  184 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVKQWLQEIDRYA-----SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE  184 (199)
T ss_dssp             EECC-CCCSHHHHHHHHHHHHHHSCC------CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-----cCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence            99999999999999998887776544     3568999999999998776666666777888889999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q psy8700         163 ELFAELLNLEKNR  175 (200)
Q Consensus       163 ~~~~~i~~~~~~~  175 (200)
                      ++|++|.+.+.++
T Consensus       185 ~l~~~l~~~l~~~  197 (199)
T 3l0i_B          185 QSFMTMAAEIKKR  197 (199)
T ss_dssp             HHHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999877543

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=2e-31  Score=192.62  Aligned_cols=166  Identities=23%  Similarity=0.371  Sum_probs=140.4

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA   81 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   81 (200)
                      .....+||+++|++|||||||+++++.+.+...+.++.+.+. ......++..+.+.+|||||++.+..++..++.++|+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            355679999999999999999999887776666677776333 4556678888999999999999999999999999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      +++|+|++++.++..+..|+..+....      .+.|+++|+||+|+.+....  .+...+....+++++++||++|.|+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi  162 (221)
T 3gj0_A           91 AIIMFDVTSRVTYKNVPNWHRDLVRVC------ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNF  162 (221)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS------TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC------CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999999988888765      46899999999999765432  2445567778899999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q psy8700         162 KELFAELLNLEKNRN  176 (200)
Q Consensus       162 ~~~~~~i~~~~~~~~  176 (200)
                      .++|++|.+.+....
T Consensus       163 ~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          163 EKPFLWLARKLIGDP  177 (221)
T ss_dssp             THHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHhCc
Confidence            999999999886554

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=4e-31  Score=187.47  Aligned_cols=165  Identities=18%  Similarity=0.200  Sum_probs=126.9

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCC-----------Cccccee-EEE-EeCCcEEEEEEEeCCCCCCCh
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIP-----------TIEDTYR-QVI-SCNKNICTLQITDTTGSHQFP   69 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~-----------~~~~~~~-~~~-~~~~~~~~~~~~D~~G~~~~~   69 (200)
                      .++..+||+++|++|||||||++.+.+. +...+.+           +.+..+. ... ..++..+.+++|||||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            4566899999999999999999766653 3333322           2221111 112 445677899999999999999


Q ss_pred             hhHhhccccCCEEEEEeeCCC------hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH
Q psy8700          70 AMQRLSISKGHAFILVYSCTS------RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA  143 (200)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  143 (200)
                      .++..++.++|++++|+|+++      ..++..+..|+..+.      ......|+++|+||+|+.+.  ....+...+.
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~------~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~  160 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG------LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVV  160 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT------CCTTSSCEEEEEECTTSTTC--CCHHHHHHHH
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc------cccCCCCEEEEEEchhcccc--cCHHHHHHHH
Confidence            999999999999999999994      455555555554441      13477999999999999764  4566777778


Q ss_pred             HHhCC-cEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         144 KMWGC-HFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       144 ~~~~~-~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      ...++ +++++||++|.|++++|++|.+.+.++.
T Consensus       161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          161 DPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence            88888 9999999999999999999999886554

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=2.3e-31  Score=183.46  Aligned_cols=157  Identities=20%  Similarity=0.261  Sum_probs=120.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|++|||||||++++.++.+.. +.|+.+.. ...+.  ...+.+.+|||||++.+..++..++.++|++++|+|
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999877643 45555522 22232  344689999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCCCcHH
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~  162 (200)
                      +++++++.....|+..+....    ..++.|+++|+||+|+.+...  ..+.....     ...+++++++||++|.|++
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  150 (164)
T 1r8s_A           77 SNDRERVNEAREELMRMLAED----ELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY  150 (164)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             CCCHHHHHHHHHHHHHHHhch----hhcCCeEEEEEECcCCcCCCC--HHHHHHHhCcccccCccEEEEEcccCCCcCHH
Confidence            999999999888887766533    135689999999999976432  11111111     1123479999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy8700         163 ELFAELLNLEKN  174 (200)
Q Consensus       163 ~~~~~i~~~~~~  174 (200)
                      ++|++|.+.+.+
T Consensus       151 ~l~~~l~~~i~~  162 (164)
T 1r8s_A          151 EGLDWLSNQLRN  162 (164)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHHhh
Confidence            999999987643

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=8.7e-31  Score=181.70  Aligned_cols=162  Identities=22%  Similarity=0.280  Sum_probs=125.5

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||++++.++.+. .+.++.+.. ...+..+  ...+.+|||||++.+..++..++.++|++++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            45799999999999999999999987764 345555422 2333333  4689999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH----HHHhCCcEEEecccCCCc
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE----AKMWGCHFMETSAKTNHN  160 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSa~~~~~  160 (200)
                      |+|++++.++.....|+..+....    ...+.|+++|+||+|+.+....... ...+    ....+++++++||++|.|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~g  155 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEE----ELRKAILVVFANKQDMEQAMTSSEM-ANSLGLPALKDRKWQIFKTSATKGTG  155 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCCHHHH-HHHHTGGGCTTSCEEEEECCTTTCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHhch----hhCCCEEEEEEECCCCcCCCCHHHH-HHHhCchhccCCceEEEECcCCCCcC
Confidence            999999999998888887665543    1356899999999999765321111 1111    122345899999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q psy8700         161 VKELFAELLNLEKNR  175 (200)
Q Consensus       161 i~~~~~~i~~~~~~~  175 (200)
                      ++++|+++.+.+.++
T Consensus       156 i~~l~~~l~~~i~~~  170 (171)
T 1upt_A          156 LDEAMEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999988654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=3.1e-31  Score=187.09  Aligned_cols=162  Identities=20%  Similarity=0.289  Sum_probs=126.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||+++|.+..+...+.++.+..+..   ++...+.+.+|||||++.+..++..++.++|++++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   96 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE---EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE---EEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence            346999999999999999999999988876777776654432   23345789999999999988999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccCCC
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKTNH  159 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~  159 (200)
                      |+|++++.++..+..|+..+....    ...+.|+++|+||+|+.+...  ..+......     ..+++++++||++|.
T Consensus        97 v~D~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  170 (188)
T 1zd9_A           97 MVDAADQEKIEASKNELHNLLDKP----QLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKD  170 (188)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCG----GGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCc----ccCCCCEEEEEECCCCccCCC--HHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence            999999999999988887766532    135689999999999976432  111111111     134579999999999


Q ss_pred             cHHHHHHHHHHHHhcc
Q psy8700         160 NVKELFAELLNLEKNR  175 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~~  175 (200)
                      |++++|++|.+.+.++
T Consensus       171 gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          171 NIDITLQWLIQHSKSR  186 (188)
T ss_dssp             THHHHHHHHHHTCC--
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999977543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=5.3e-30  Score=182.25  Aligned_cols=158  Identities=17%  Similarity=0.257  Sum_probs=118.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||++++.++.+. .+.++.+.. ...+..++  +.+.+|||||++.+..++..++..+|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            45789999999999999999999987763 345555443 34444555  689999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-----------------hC
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-----------------WG  147 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~  147 (200)
                      |+|++++.++.....|+..+.....    ..+.|+++|+||+|+.+  .....+.......                 .+
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~----~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDET----IANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARP  172 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGG----GTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcc----cCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCce
Confidence            9999999999999988877765431    35689999999999975  3344444443331                 23


Q ss_pred             CcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         148 CHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       148 ~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      ++++++||++|.|++++|++|.+.+
T Consensus       173 ~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          173 LEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHhc
Confidence            5799999999999999999998643

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=4.8e-30  Score=180.75  Aligned_cols=163  Identities=18%  Similarity=0.192  Sum_probs=123.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.. ...+..++  ..+++|||||++++..++..++.++|++++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            56899999999999999999999987765 555655533 23333443  689999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccCCC
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKTNH  159 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~  159 (200)
                      |+|+++++++.....|+..+....    .....|+++|+||+|+.+...  ..+......     ..+++++++||++|.
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  163 (187)
T 1zj6_A           90 VVDSTDRERISVTREELYKMLAHE----DLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGE  163 (187)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSG----GGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhch----hhCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence            999999999999988887776543    135689999999999976332  222222221     234589999999999


Q ss_pred             cHHHHHHHHHHHHhccch
Q psy8700         160 NVKELFAELLNLEKNRNI  177 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~~~~  177 (200)
                      |++++|++|.+.+.....
T Consensus       164 gi~~l~~~l~~~~~~~~~  181 (187)
T 1zj6_A          164 GLCQGLEWMMSRLKIRLE  181 (187)
T ss_dssp             THHHHHHHHHHHHCC---
T ss_pred             CHHHHHHHHHHHHHHHhh
Confidence            999999999998865443

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=2e-29  Score=178.02  Aligned_cols=163  Identities=15%  Similarity=0.218  Sum_probs=125.9

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCC-CCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT-FRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      ....+||+++|++|||||||+++|.+.. +...+.++.+ .....+..++  ..+.+|||||++.+..++..++.++|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            3457999999999999999999999877 4455566655 3334444443  6899999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccC
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKT  157 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~  157 (200)
                      ++|+|++++.++..+..|+..+......  .....|+++|+||+|+.+..  ...+......     ..+++++++||++
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  170 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPDI--KHRRIPILFFANKMDLRDAV--TSVKVSQLLCLENIKDKPWHICASDAIK  170 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTTT--TTSCCCEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhh--ccCCCeEEEEEeCcCcccCC--CHHHHHHHhChhhccCCceEEEEccCCC
Confidence            9999999999999998888877765420  01568999999999997643  2233333322     1356899999999


Q ss_pred             CCcHHHHHHHHHHHHh
Q psy8700         158 NHNVKELFAELLNLEK  173 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~~  173 (200)
                      |.|++++|++|.+.+.
T Consensus       171 ~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          171 GEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             TBTHHHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999998764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=5.4e-31  Score=186.52  Aligned_cols=161  Identities=16%  Similarity=0.215  Sum_probs=118.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +...+||+++|++|||||||++++.++.+. .+.|+.+. ....+..  ..+.+.+|||||++.+..++..++.++|+++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~-~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF-NVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE-EEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce-eEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            356799999999999999999999987764 33444442 2222333  3478999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCC
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTN  158 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~  158 (200)
                      +|+|++++.++.....|+..+....    ...+.|+++|+||+|+.+...  ..+.....     ...+++++++||++|
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~----~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g  175 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQED----ELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQG  175 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHhccc----ccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCc
Confidence            9999999999999888887766533    135689999999999976432  11111111     112347999999999


Q ss_pred             CcHHHHHHHHHHHHhc
Q psy8700         159 HNVKELFAELLNLEKN  174 (200)
Q Consensus       159 ~~i~~~~~~i~~~~~~  174 (200)
                      .|++++|++|.+.+.+
T Consensus       176 ~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          176 TGLYDGLDWLSHELSK  191 (192)
T ss_dssp             BTHHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999987743

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.4e-29  Score=179.01  Aligned_cols=157  Identities=17%  Similarity=0.255  Sum_probs=122.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      .+.+||+++|++|||||||++++.++.+. .+.++.+.. ...+..++  +.+.+|||||++.+..++..+++++|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            45789999999999999999999987764 345555443 34455555  789999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH------------hCCcEEE
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM------------WGCHFME  152 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~  152 (200)
                      |+|++++.++.....|+..+....    ...+.|+++|+||+|+.+  .....+.......            .++++++
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIA----ELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFM  170 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCG----GGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEE
T ss_pred             EEECCChHHHHHHHHHHHHHHcch----hhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEE
Confidence            999999999999998887776543    135689999999999976  2333333333221            3457999


Q ss_pred             ecccCCCcHHHHHHHHHHH
Q psy8700         153 TSAKTNHNVKELFAELLNL  171 (200)
Q Consensus       153 vSa~~~~~i~~~~~~i~~~  171 (200)
                      +||++|.|++++|++|.+.
T Consensus       171 ~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          171 CSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CBTTTTBSHHHHHHHHHTT
T ss_pred             eECCcCCCHHHHHHHHHhh
Confidence            9999999999999999764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=7.4e-30  Score=179.56  Aligned_cols=161  Identities=17%  Similarity=0.212  Sum_probs=126.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      .+.+||+++|++|||||||++++.+.. ...+.|+.+.. ...+..+  ...+++|||||++.+...+..++.++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            578999999999999999999999877 55666666533 2333343  4689999999999988999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccCCC
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKTNH  159 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~  159 (200)
                      |+|++++.++..+..|+..+....    ...+.|+++|+||+|+.+....  .+......     ..+++++++||++|.
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (186)
T 1ksh_A           92 VVDSADRQRMQDCQRELQSLLVEE----RLAGATLLIFANKQDLPGALSC--NAIQEALELDSIRSHHWRIQGCSAVTGE  165 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EEECcCHHHHHHHHHHHHHHHhCh----hcCCCcEEEEEeCccCCCCCCH--HHHHHHhChhhccCCceEEEEeeCCCCC
Confidence            999999999999888887776543    1356899999999999765322  22111111     234589999999999


Q ss_pred             cHHHHHHHHHHHHhcc
Q psy8700         160 NVKELFAELLNLEKNR  175 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~~  175 (200)
                      |++++|+++.+.+.++
T Consensus       166 gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          166 DLLPGIDWLLDDISSR  181 (186)
T ss_dssp             THHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999988654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=3.5e-29  Score=191.00  Aligned_cols=164  Identities=28%  Similarity=0.483  Sum_probs=141.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...++|+++|++|+|||||++++.++.+...+.++....+...+..++..+.+.+|||||++.+..+...++..+|++++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            34689999999999999999999998887788888877777777778888999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cE
Q psy8700          85 VYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HF  150 (200)
Q Consensus        85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~  150 (200)
                      |+|++++.++..+. .|...+....      +..|+++|+||+|+.+.            ......+...++...++ ++
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  306 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  306 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC------TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC------CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEE
Confidence            99999999999987 5656665543      36899999999999653            34566677778888887 99


Q ss_pred             EEecccCCCcHHHHHHHHHHHHhc
Q psy8700         151 METSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      +++||++|.|++++|+.|.+.+..
T Consensus       307 ~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          307 LECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEecCCCCcCHHHHHHHHHHHHhc
Confidence            999999999999999999987754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=1e-29  Score=180.49  Aligned_cols=162  Identities=19%  Similarity=0.181  Sum_probs=116.5

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEe-CCcEEEEEEEeCCCCCCChhhH---hhccc
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISC-NKNICTLQITDTTGSHQFPAMQ---RLSIS   77 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~D~~G~~~~~~~~---~~~~~   77 (200)
                      ++...+||+++|++|||||||++++.+... ............ ..... ++..+.+++|||||++.+....   ..++.
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   94 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR   94 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence            466789999999999999999998877433 222111221111 22223 3566899999999999987777   78999


Q ss_pred             cCCEEEEEeeCCCh--hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc-------cccCHHHHHHHHH----
Q psy8700          78 KGHAFILVYSCTSR--QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN-------REVSAAEGEAEAK----  144 (200)
Q Consensus        78 ~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~----  144 (200)
                      ++|++++|+|++++  +++..+..|+..+...      .++.|+++|+||+|+.+.       +.+.......++.    
T Consensus        95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~------~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~  168 (196)
T 3llu_A           95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV------NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE  168 (196)
T ss_dssp             TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH------CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc------CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence            99999999999997  5566666555554332      257899999999998653       2333334455555    


Q ss_pred             HhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         145 MWGCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       145 ~~~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      ..+++|+++||++ .|+.++|+.+.+.+
T Consensus       169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            5577999999999 99999999998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=6.5e-30  Score=179.32  Aligned_cols=160  Identities=17%  Similarity=0.218  Sum_probs=122.1

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||++++.+..+ ..+.++.+. ....+..+  .+.+.+|||||++.+...+..++.++|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~-~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF-NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE-EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe-EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            5789999999999999999999998754 234444442 23334444  4689999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCCC
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTNH  159 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~  159 (200)
                      |+|++++.++.....|+..+....    .....|+++|+||+|+.+....  .+.....     ...+++++++||++|.
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  163 (181)
T 1fzq_A           90 VIDSADRKRFEETGQELTELLEEE----KLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (181)
T ss_dssp             EEETTCGGGHHHHHHHHHHHTTCG----GGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EEECcCHHHHHHHHHHHHHHHhCh----hhcCCCEEEEEECcCcccCCCH--HHHHHHhCchhccCCceEEEEccCCCCC
Confidence            999999999999888876665432    1356899999999999765432  1111111     1124579999999999


Q ss_pred             cHHHHHHHHHHHHhc
Q psy8700         160 NVKELFAELLNLEKN  174 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~  174 (200)
                      |++++|+++.+.+.+
T Consensus       164 gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          164 GVQDGMNWVCKNVNA  178 (181)
T ss_dssp             THHHHHHHHHHTC--
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999987644

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=1.5e-30  Score=182.47  Aligned_cols=158  Identities=18%  Similarity=0.210  Sum_probs=121.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ....+||+++|++|||||||+++|.+..+ ..+.++.+... ..+..++  ..+.+|||||++.+..++..++.++|+++
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   93 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   93 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            45679999999999999999999999877 44555555333 3334443  68999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCC
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTN  158 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~  158 (200)
                      +|+|++++.++..+..|+..+....    .....|+++|+||+|+.+...  ..+.....     ...+++++++||++|
T Consensus        94 ~v~D~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  167 (181)
T 2h17_A           94 VVVDSTDRERISVTREELYKMLAHE----DLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTG  167 (181)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCh----hhCCCeEEEEEECCCcccCCC--HHHHHHHhCcccccCCceEEEEccCCCC
Confidence            9999999999999888887776542    135689999999999976422  22222211     123458999999999


Q ss_pred             CcHHHHHHHHHHH
Q psy8700         159 HNVKELFAELLNL  171 (200)
Q Consensus       159 ~~i~~~~~~i~~~  171 (200)
                      .|++++|++|.+.
T Consensus       168 ~gi~~l~~~l~~~  180 (181)
T 2h17_A          168 EGLCQGLEWMMSR  180 (181)
T ss_dssp             BTHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhh
Confidence            9999999999764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=2.6e-30  Score=182.37  Aligned_cols=162  Identities=19%  Similarity=0.244  Sum_probs=125.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      .+.+||+++|++|||||||++++..+.+.. +.|+.+.. ...+..+  ...+.+|||||++.+..++..+++++|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            568999999999999999999998877643 45555432 2333333  4689999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH-----HHHhCCcEEEecccCCC
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE-----AKMWGCHFMETSAKTNH  159 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~vSa~~~~  159 (200)
                      |+|+++++++.....|+..+....    ...+.|+++|+||+|+.+....  .+....     ....+++++++||++|.
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  169 (189)
T 2x77_A           96 VVDSTDRDRMGVAKHELYALLDED----ELRKSLLLIFANKQDLPDAASE--AEIAEQLGVSSIMNRTWTIVKSSSKTGD  169 (189)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCS----TTTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh----hcCCCeEEEEEECCCCcCCCCH--HHHHHHhChhhccCCceEEEEccCCCcc
Confidence            999999999998888876665533    2357899999999999765321  111111     11234579999999999


Q ss_pred             cHHHHHHHHHHHHhccc
Q psy8700         160 NVKELFAELLNLEKNRN  176 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~~~  176 (200)
                      |++++++++.+.+.++.
T Consensus       170 gi~~l~~~l~~~i~~~~  186 (189)
T 2x77_A          170 GLVEGMDWLVERLREQG  186 (189)
T ss_dssp             THHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence            99999999999886543

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.94  E-value=3.2e-32  Score=194.50  Aligned_cols=162  Identities=29%  Similarity=0.523  Sum_probs=134.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||+++|.+..+...+.++....+...+..++..+.+++|||||++.+..++..++.++|++++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  107 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI  107 (204)
Confidence            56799999999999999999999988887777777776666666667777889999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhCC-cE
Q psy8700          85 VYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWGC-HF  150 (200)
Q Consensus        85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~  150 (200)
                      |+|++++.++..+. .|+..+....      ++.|+++|+||+|+.+..            .....+...++...++ ++
T Consensus       108 v~D~~~~~s~~~~~~~~~~~l~~~~------~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  181 (204)
T 3th5_A          108 CFSLVSPASFENVRAKWYPEVRHHC------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  181 (204)
Confidence            99999999999887 5555555432      368999999999997543            3333445556666777 89


Q ss_pred             EEecccCCCcHHHHHHHHHHHH
Q psy8700         151 METSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      +++||++|.|++++|++|.+.+
T Consensus       182 ~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          182 LECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999999998754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.96  E-value=2e-28  Score=174.18  Aligned_cols=164  Identities=30%  Similarity=0.383  Sum_probs=138.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ..+||+++|++|||||||++++.+..+...+.++.+.. ....+.+++..+.+.+||++|++.+..+...++..++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            46899999999999999999999988776677766533 34567778888999999999999888888888999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|+++..++..+..|+..+....     ....|+++++||+|+.+.......++..++...++.++++||+++.|+.++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l  158 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHA-----DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEA  158 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhc-----CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            999999999998888877665543     245799999999999877666667778888888999999999999999999


Q ss_pred             HHHHHHHHhc
Q psy8700         165 FAELLNLEKN  174 (200)
Q Consensus       165 ~~~i~~~~~~  174 (200)
                      |++|.+.+.+
T Consensus       159 ~~~l~~~~~~  168 (199)
T 2f9l_A          159 FKNILTEIYR  168 (199)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998854

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=3.6e-30  Score=180.61  Aligned_cols=161  Identities=20%  Similarity=0.301  Sum_probs=121.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||++++.++.+ ..+.++.+.. ...+..++  ..+.+|||||++.+...+..++.++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            5789999999999999999999998776 4455555533 23333443  689999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----HhCCcEEEecccCCC
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----MWGCHFMETSAKTNH  159 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~  159 (200)
                      |+|++++.++..+..|+..+....    .....|+++|+||+|+.+...  ..+......     ..+++++++||++|.
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (183)
T 1moz_A           92 VVDSTDKDRMSTASKELHLMLQEE----ELQDAALLVFANKQDQPGALS--ASEVSKELNLVELKDRSWSIVASSAIKGE  165 (183)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTTSS----TTSSCEEEEEEECTTSTTCCC--HHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred             EEECCCHHHHHHHHHHHHHHHcCh----hhCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEEccCCCCc
Confidence            999999999999888877665433    136689999999999976432  222222211     123479999999999


Q ss_pred             cHHHHHHHHHHHHhcc
Q psy8700         160 NVKELFAELLNLEKNR  175 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~~  175 (200)
                      |+++++++|.+.+.++
T Consensus       166 gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          166 GITEGLDWLIDVIKEE  181 (183)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999987543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=1.2e-28  Score=177.11  Aligned_cols=167  Identities=19%  Similarity=0.239  Sum_probs=114.7

Q ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCc-EEEEEEEeCCCCCCChh-hHhhcccc
Q psy8700           1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKN-ICTLQITDTTGSHQFPA-MQRLSISK   78 (200)
Q Consensus         1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~-~~~~~~~~   78 (200)
                      |..+...+||+++|++|||||||+++|++..+...+.++......  +..++. .+.+.+|||||++.+.. ++..++..
T Consensus         1 m~~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   78 (214)
T 2fh5_B            1 MARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSS   78 (214)
T ss_dssp             -------CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGG
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhh
Confidence            445677899999999999999999999998877666554433322  444543 57899999999998887 78889999


Q ss_pred             CCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHH--H-HHH-----------
Q psy8700          79 GHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG--E-AEA-----------  143 (200)
Q Consensus        79 ~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~--~-~~~-----------  143 (200)
                      +|++++|+|+++.. ++.....+|..+......  .....|+++|+||+|+.+.........  . .+.           
T Consensus        79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s  156 (214)
T 2fh5_B           79 ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA--LKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPS  156 (214)
T ss_dssp             EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT--STTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----
T ss_pred             CCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhh--cccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccc
Confidence            99999999999854 455555555544333100  135689999999999976543211110  0 000           


Q ss_pred             --------H-------------Hh--CCcEEEecccCC------CcHHHHHHHHHHH
Q psy8700         144 --------K-------------MW--GCHFMETSAKTN------HNVKELFAELLNL  171 (200)
Q Consensus       144 --------~-------------~~--~~~~~~vSa~~~------~~i~~~~~~i~~~  171 (200)
                              .             ..  +++|++|||++|      .||+++|++|.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          157 TLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             --------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                    0             01  557999999999      9999999999874

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=5.7e-30  Score=180.02  Aligned_cols=164  Identities=17%  Similarity=0.270  Sum_probs=116.8

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhC--CCCCCcCCCccccee-EEEEe---CCcEEEEEEEeCCCCCCChhhHhhccccCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKG--TFRESYIPTIEDTYR-QVISC---NKNICTLQITDTTGSHQFPAMQRLSISKGH   80 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   80 (200)
                      .+||+++|++|||||||++++.+.  .+...+.++.+..+. .....   ++..+.+.+|||+|++.+..+...++.+++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999984  344445566553332 22222   235678999999999888888888999999


Q ss_pred             EEEEEeeCCCh-hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC---HHHHHHHHHHhCCc----EEE
Q psy8700          81 AFILVYSCTSR-QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS---AAEGEAEAKMWGCH----FME  152 (200)
Q Consensus        81 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~  152 (200)
                      ++++|+|++++ .++..+..|+..+....      ++.|+++|+||+|+.+.....   ......++...+++    +++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA------SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHF  155 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC------TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEE
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC------CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEE
Confidence            99999999997 57888888888776543      458999999999997654322   12223344445666    999


Q ss_pred             ecccCCC-cHHHHHHHHHHHHhccc
Q psy8700         153 TSAKTNH-NVKELFAELLNLEKNRN  176 (200)
Q Consensus       153 vSa~~~~-~i~~~~~~i~~~~~~~~  176 (200)
                      +||+++. ++.++++.|.+.+.+..
T Consensus       156 ~Sa~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          156 VNATEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred             EecccCchhHHHHHHHHHHHHhccc
Confidence            9999996 99999999998876543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=9.4e-28  Score=169.69  Aligned_cols=163  Identities=31%  Similarity=0.410  Sum_probs=139.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +..++|+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+++||++|.+++..+...+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            3458999999999999999999999887777777776443 556777888888999999999998888888999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|.++..++..+..|+..+....     ....|+++++||+|+.+........+..++...++.++++|++++.|+.+
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~  181 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDHA-----DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA  181 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-----CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999988888877665543     24579999999999987666667778888888999999999999999999


Q ss_pred             HHHHHHHHH
Q psy8700         164 LFAELLNLE  172 (200)
Q Consensus       164 ~~~~i~~~~  172 (200)
                      +|+.+.+.+
T Consensus       182 l~~~l~~~i  190 (191)
T 1oix_A          182 AFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=1.3e-27  Score=165.18  Aligned_cols=152  Identities=16%  Similarity=0.190  Sum_probs=110.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCCh------hhHhhccc--
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFP------AMQRLSIS--   77 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~--   77 (200)
                      .++|+++|++|||||||+++|.+..+.....++.. ......+..++  ..+.+|||||+..+.      .+...++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            58999999999999999999998765444344332 22233344443  589999999988764      44556664  


Q ss_pred             cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC
Q psy8700          78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT  157 (200)
Q Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  157 (200)
                      +++++++|+|.++.+.   ...|+..+..        ...|+++|+||+|+........ +...++...+++++++||++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~--------~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~  148 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME--------MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAK  148 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH--------TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGG
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh--------cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCC
Confidence            7999999999998643   3345544443        2379999999999875544332 35666777889999999999


Q ss_pred             CCcHHHHHHHHHHHH
Q psy8700         158 NHNVKELFAELLNLE  172 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~  172 (200)
                      |.|++++|+++.+.+
T Consensus       149 ~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          149 KMGIEELKKAISIAV  163 (165)
T ss_dssp             TBSHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998865

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=4.2e-27  Score=170.76  Aligned_cols=170  Identities=16%  Similarity=0.109  Sum_probs=114.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCC------CC---hhhHh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH------QF---PAMQR   73 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~------~~---~~~~~   73 (200)
                      .+..++|+++|++|||||||+++|++..+.....+... ..........  ...+.+|||||+.      ..   .....
T Consensus        26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  103 (228)
T 2qu8_A           26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTIT  103 (228)
T ss_dssp             CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHH
Confidence            35789999999999999999999998776422222111 1111122222  3689999999983      31   12233


Q ss_pred             hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH---HHHHHHHHhC--C
Q psy8700          74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA---EGEAEAKMWG--C  148 (200)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~  148 (200)
                      .++..+|++++|+|++++.++.. ..+...+.....   ..+..|+++|+||+|+.+..+....   ....+....+  +
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~l~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTI-KEQINLFYSIKS---VFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPI  179 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCH-HHHHHHHHHHHT---CC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCE
T ss_pred             HhhccccEEEEEEecccccCcch-HHHHHHHHHHHH---hhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCc
Confidence            45678899999999999877642 223333333332   1246899999999999876665543   3344555555  7


Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHhccchhH
Q psy8700         149 HFMETSAKTNHNVKELFAELLNLEKNRNISL  179 (200)
Q Consensus       149 ~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~  179 (200)
                      +++++||++|.|+.++|++|.+.+.+.....
T Consensus       180 ~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~  210 (228)
T 2qu8_A          180 KFSSFSTLTGVGVEQAKITACELLKNDQAES  210 (228)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEecccCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887665443

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=8.6e-28  Score=181.46  Aligned_cols=165  Identities=15%  Similarity=0.159  Sum_probs=126.7

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC--C-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC-----hhhHhhccc
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTF--R-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF-----PAMQRLSIS   77 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~~~~   77 (200)
                      ..+||+++|++|||||||++++.++..  . ..+.+|.+..+. ...+++ .+.+.+|||||++.+     ..++..++.
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            468999999999999999999988632  2 234444443332 233333 578999999999877     678888899


Q ss_pred             cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc--ccc----cCHHHHHHHHHHhC---C
Q psy8700          78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE--NRE----VSAAEGEAEAKMWG---C  148 (200)
Q Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~  148 (200)
                      ++|++++|+|++++.++..+..|...+.....   ..++.|+++|+||+|+.+  .+.    ....+...++...|   +
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~---~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~  156 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRK---YSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNL  156 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHH---HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHHHH---hCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCe
Confidence            99999999999999999999887666655432   135689999999999976  332    33455667777776   6


Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         149 HFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       149 ~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      +++++||++ .++.++|..+.+.+....
T Consensus       157 ~~~~tSa~~-~~i~e~~~~iv~~li~~~  183 (307)
T 3r7w_A          157 IGFPTSIWD-ESLYKAWSQIVCSLIPNM  183 (307)
T ss_dssp             EEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred             EEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence            999999999 899999999988765443

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=6.5e-27  Score=163.19  Aligned_cols=159  Identities=22%  Similarity=0.284  Sum_probs=115.8

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA   81 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   81 (200)
                      .....++|+++|++|||||||+++|.+..+...+.++.... ....+..++.  .+.+|||||++.+..++..++..+|+
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~   81 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDI   81 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCE
Confidence            35678999999999999999999999988766665555422 2334455554  67899999999999888899999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-------hC--CcEEE
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-------WG--CHFME  152 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~~~  152 (200)
                      +++|+|++++.......    .+....     ....|+++|+||+|+.+..   ..........       ++  +++++
T Consensus        82 ~i~v~d~~~~~~~~~~~----~l~~~~-----~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (178)
T 2lkc_A           82 VILVVAADDGVMPQTVE----AINHAK-----AANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCK  149 (178)
T ss_dssp             EEEEEETTCCCCHHHHH----HHHHHG-----GGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred             EEEEEECCCCCcHHHHH----HHHHHH-----hCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEE
Confidence            99999998843222211    122222     2458999999999997632   1111111111       12  47999


Q ss_pred             ecccCCCcHHHHHHHHHHHHhcc
Q psy8700         153 TSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       153 vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      +||++|.|++++|++|.+.+...
T Consensus       150 ~Sa~~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          150 LSAKTKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             CCSSSSHHHHHHHHHHHHHHHHT
T ss_pred             EecCCCCCHHHHHHHHHHhhhhh
Confidence            99999999999999999977544

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=5.1e-27  Score=177.25  Aligned_cols=166  Identities=17%  Similarity=0.138  Sum_probs=122.2

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCC--cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh----------
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP----------   69 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------   69 (200)
                      |++++...|+++|.+|||||||+|+|++..+...  ...++.......... +...++.+|||||+....          
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccccchhHHHHHH
Confidence            5678889999999999999999999999876421  111222222222222 225689999999986644          


Q ss_pred             hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC--
Q psy8700          70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG--  147 (200)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--  147 (200)
                      .....++..+|++++|+|++++.+......|+..+..        ...|+++|+||+|+.............+....+  
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--------~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~  155 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--------LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPEL  155 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--------GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--------cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCC
Confidence            5666788899999999999998877776665555544        347999999999997444434444555666654  


Q ss_pred             CcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         148 CHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       148 ~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      .+++++||++|.|++++++.+.+.+.+..
T Consensus       156 ~~i~~vSA~~g~gv~~L~~~l~~~l~~~~  184 (308)
T 3iev_A          156 TEIVPISALKGANLDELVKTILKYLPEGE  184 (308)
T ss_dssp             CCEEECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCccCC
Confidence            68999999999999999999999886543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=4.1e-28  Score=184.72  Aligned_cols=160  Identities=18%  Similarity=0.249  Sum_probs=117.7

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      ..+||+|+|.+|+|||||+++|.+..+...+ |+.+..+   ..++...+.+.+|||||++.+..+...++..+|++++|
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~---~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV  239 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV  239 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE---EEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE---EEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            4679999999999999999999987764332 3333222   22233457899999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-----HHhCCcEEEecccCCCc
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-----KMWGCHFMETSAKTNHN  160 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~~  160 (200)
                      +|++++.++..+..++..+....    ..+..|++||+||+|+.+....  .+.....     ...+++++++||++|.|
T Consensus       240 ~D~~~~~s~~~~~~~~~~~~~~~----~~~~~piilV~NK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~vSAk~g~g  313 (329)
T 3o47_A          240 VDSNDRERVNEAREELMRMLAED----ELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRHRNWYIQATCATSGDG  313 (329)
T ss_dssp             EETTCSSSHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCCH--HHHHHHHTCTTCCSSCEEEEECBTTTTBT
T ss_pred             EECCchHHHHHHHHHHHHHHhhh----ccCCCeEEEEEECccCCcccCH--HHHHHHhchhhhhcCCCEEEEEECCCCcC
Confidence            99999999999888887766544    2357899999999999765432  1111111     11234699999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q psy8700         161 VKELFAELLNLEKNR  175 (200)
Q Consensus       161 i~~~~~~i~~~~~~~  175 (200)
                      |+++|++|.+.+.++
T Consensus       314 i~el~~~l~~~l~~~  328 (329)
T 3o47_A          314 LYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.6e-28  Score=179.11  Aligned_cols=164  Identities=23%  Similarity=0.324  Sum_probs=118.5

Q ss_pred             CCCceEEEEECCC---------CCCHHHHHHHHhh---CCCCCCcCCCc-c-cceeE--------------EEEeCCcEE
Q psy8700           4 QSNDYRVVVFGAG---------GVGKSSLVLRFVK---GTFRESYIPTI-E-DTYRQ--------------VISCNKNIC   55 (200)
Q Consensus         4 ~~~~~ki~~~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~-~~~~~--------------~~~~~~~~~   55 (200)
                      .+..+||+++|++         |||||||+++|++   ..+...+.++. + +....              ....++..+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            4567999999999         9999999999998   45555555554 1 11111              111356778


Q ss_pred             EEEEEe-----------------------CCCCCCChhhHhhccc---------------------cCCEEEEEeeCCCh
Q psy8700          56 TLQITD-----------------------TTGSHQFPAMQRLSIS---------------------KGHAFILVYSCTSR   91 (200)
Q Consensus        56 ~~~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~   91 (200)
                      .+++||                       ++|++++..++..++.                     ++|++++|+|++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            999999                       5566666666666776                     79999999999998


Q ss_pred             --hHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-hCCcEEEecccCCCcHHHHHHHH
Q psy8700          92 --QSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-WGCHFMETSAKTNHNVKELFAEL  168 (200)
Q Consensus        92 --~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~~i~~~~~~i  168 (200)
                        .++..+..|+..+.....    ..+.|++||+||+|+.+...+  .+...++.. .+++++++||++|.|++++|++|
T Consensus       176 ~~~s~~~~~~~l~~i~~~~~----~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          176 MNRNFDDQLKFVSNLYNQLA----KTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             ---CHHHHHHHHHHHHHHHH----HTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhc----cCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence              899999999888876521    245899999999999765443  344555554 47899999999999999999999


Q ss_pred             HHHHh
Q psy8700         169 LNLEK  173 (200)
Q Consensus       169 ~~~~~  173 (200)
                      .+.+.
T Consensus       250 ~~~l~  254 (255)
T 3c5h_A          250 VQLID  254 (255)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            88763

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=2.1e-26  Score=162.06  Aligned_cols=159  Identities=17%  Similarity=0.207  Sum_probs=117.5

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCCh------hhHhhcc
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFP------AMQRLSI   76 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~   76 (200)
                      +-..++|+++|++|||||||+++|.+..+.....++.. ......+..++  ..+.+|||||+..+.      .+...++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence            34679999999999999999999998665433344333 22233444443  689999999988764      4556666


Q ss_pred             c--cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700          77 S--KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS  154 (200)
Q Consensus        77 ~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  154 (200)
                      .  .++++++|+|.++.   .....|+..+..        ...|+++|+||+|+....... .....+....+++++++|
T Consensus        82 ~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~--------~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~S  149 (188)
T 2wjg_A           82 INEKPDLVVNIVDATAL---ERNLYLTLQLME--------MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLS  149 (188)
T ss_dssp             HHHCCSEEEEEEEGGGH---HHHHHHHHHHHT--------TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECB
T ss_pred             hccCCCEEEEEecchhH---HHHHHHHHHHHh--------cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEE
Confidence            4  48999999998763   444455544443        347999999999987654433 345667777889999999


Q ss_pred             ccCCCcHHHHHHHHHHHHhccc
Q psy8700         155 AKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      |+++.|+.++|+++.+.+.++.
T Consensus       150 a~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          150 AAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             GGGTBSHHHHHHHHHHHHTTC-
T ss_pred             ecCCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999887655

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=1.7e-27  Score=178.71  Aligned_cols=161  Identities=16%  Similarity=0.152  Sum_probs=114.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCC---CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChh---hHhhccccCCEE
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRE---SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPA---MQRLSISKGHAF   82 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~~~~   82 (200)
                      ||+++|+.|||||||++++.++....   .+.+|.+..+..   + +..+.+++|||+|++++..   ....++++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---E-ccEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            78999999999999999887654322   245565544332   2 2347899999999999864   578899999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc-------ccCHHHHHHHHHH----hCCcEE
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR-------EVSAAEGEAEAKM----WGCHFM  151 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~~~~----~~~~~~  151 (200)
                      |+|+|++++ .......|...+.....   ..++.|+++++||+|+.+..       ++...+...+++.    .+++||
T Consensus        77 IlV~Ditd~-~~~~~~~l~~~l~~~~~---~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~  152 (331)
T 3r7w_B           77 VYVIDSQDE-YINAITNLAMIIEYAYK---VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFY  152 (331)
T ss_dssp             EEECCCSSC-TTHHHHHHHHHHHHHHH---HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEE
T ss_pred             EEEEECCch-HHHHHHHHHHHHHHHhh---cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEE
Confidence            999999997 33333333222222211   13678999999999997642       2333344445553    467999


Q ss_pred             EecccCCCcHHHHHHHHHHHHhccchh
Q psy8700         152 ETSAKTNHNVKELFAELLNLEKNRNIS  178 (200)
Q Consensus       152 ~vSa~~~~~i~~~~~~i~~~~~~~~~~  178 (200)
                      +|||++ .+|.++|..+.+.+.+....
T Consensus       153 eTSAkd-~nV~eAFs~iv~~li~~~~~  178 (331)
T 3r7w_B          153 LTSIFD-HSIYEAFSRIVQKLIPELSF  178 (331)
T ss_dssp             CCCSSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred             EeccCC-CcHHHHHHHHHHHHHhhHHH
Confidence            999997 58999999999988655443

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=8.1e-27  Score=165.09  Aligned_cols=157  Identities=15%  Similarity=0.216  Sum_probs=105.9

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCC----------CCCChhhH
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTG----------SHQFPAMQ   72 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G----------~~~~~~~~   72 (200)
                      .+..++|+++|++|||||||+++|++..+...+.++.+.+.. .....++   .+.+|||||          ++.+..+.
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            456899999999999999999999987754444444443332 2223333   589999999          44555667


Q ss_pred             hhccccC---CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH----H
Q psy8700          73 RLSISKG---HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK----M  145 (200)
Q Consensus        73 ~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~  145 (200)
                      ..++..+   |++++|+|++++.+..... ++..+..        ...|+++|+||+|+.+..+..... .....    .
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--------~~~p~i~v~nK~Dl~~~~~~~~~~-~~~~~~~~~~  166 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--------YGIPVIVIATKADKIPKGKWDKHA-KVVRQTLNID  166 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--------TTCCEEEEEECGGGSCGGGHHHHH-HHHHHHHTCC
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--------cCCCEEEEEECcccCChHHHHHHH-HHHHHHHccc
Confidence            7777776   9999999999876665532 2233332        347999999999998765433211 12222    2


Q ss_pred             hCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         146 WGCHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       146 ~~~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      .+++++++||++|.|++++|++|.+.+.
T Consensus       167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          167 PEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            3568999999999999999999998764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=6.6e-26  Score=155.51  Aligned_cols=149  Identities=19%  Similarity=0.252  Sum_probs=104.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC-------ChhhHhhcccc
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ-------FPAMQRLSISK   78 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~   78 (200)
                      .||+++|++|+|||||++++.+....  ..+.++...........++.  .+.+|||||...       +......++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999987642  22222222333444444544  789999999876       34556678899


Q ss_pred             CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecccC
Q psy8700          79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSAKT  157 (200)
Q Consensus        79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~  157 (200)
                      +|++++|+|.+++.+... ..+...+..        ...|+++|+||+|+.+..+.    ...+. ..++ +++++||++
T Consensus        80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~--------~~~p~ilv~nK~Dl~~~~~~----~~~~~-~~~~~~~~~~Sa~~  145 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD-YEVAEYLRR--------KGKPVILVATKVDDPKHELY----LGPLY-GLGFGDPIPTSSEH  145 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH-HHHHHHHHH--------HTCCEEEEEECCCSGGGGGG----CGGGG-GGSSCSCEECBTTT
T ss_pred             CCEEEEEEECCCcccHhH-HHHHHHHHh--------cCCCEEEEEECcccccchHh----HHHHH-hCCCCCeEEEeccc
Confidence            999999999998644322 122222332        23799999999999765321    22223 4566 899999999


Q ss_pred             CCcHHHHHHHHHHHH
Q psy8700         158 NHNVKELFAELLNLE  172 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~  172 (200)
                      |.|++++|+++.+.+
T Consensus       146 ~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          146 ARGLEELLEAIWERL  160 (161)
T ss_dssp             TBSHHHHHHHHHHHC
T ss_pred             CCChHHHHHHHHHhC
Confidence            999999999998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=2.2e-26  Score=160.08  Aligned_cols=153  Identities=24%  Similarity=0.281  Sum_probs=110.0

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh--------Hhhc
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM--------QRLS   75 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~   75 (200)
                      ..+||+++|++|||||||+++|.+....  ..+.++........+..++.  .+.+|||||+..+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            5689999999999999999999986532  22233333444555566654  5899999998754211        1235


Q ss_pred             cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700          76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSA  155 (200)
Q Consensus        76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  155 (200)
                      +..+|++++|+|++++.++.. ..|+..+....     ....|+++|+||+|+.+....       +....+.+++++||
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-----~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~SA  147 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-----PAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSA  147 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-----CTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCT
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-----ccCCCEEEEEECccCCcchhh-------hhhccCCceEEEeC
Confidence            789999999999998877653 46666666544     246899999999998543210       01124568999999


Q ss_pred             cCCCcHHHHHHHHHHHHh
Q psy8700         156 KTNHNVKELFAELLNLEK  173 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~~~  173 (200)
                      ++|.|++++|++|.+.+.
T Consensus       148 ~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          148 RTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             TTCTTHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHhh
Confidence            999999999999998764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=2.1e-26  Score=185.91  Aligned_cols=164  Identities=16%  Similarity=0.216  Sum_probs=121.5

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEE---------EeCCcEEEEEEEeCCCCCCChhhHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVI---------SCNKNICTLQITDTTGSHQFPAMQRL   74 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~D~~G~~~~~~~~~~   74 (200)
                      ....+||+++|.+|||||||++++++..+...+.++.+..+....         ..++..+.+.+|||||++.+..+...
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            456799999999999999999999998887777777765544321         11234578999999999999999999


Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS  154 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  154 (200)
                      ++..+|++++|+|+++.   .....|+..+....      ++.|+++|+||+|+.+................+++++++|
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~------~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS  188 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG------GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRIS  188 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS------SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECC
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC------CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEe
Confidence            99999999999998765   45567777777665      4589999999999987777666667777777888999999


Q ss_pred             ccCCCcHHHHHHHHHHHHhccc
Q psy8700         155 AKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      |++|.|++++++.+.+.+.+..
T Consensus       189 A~~g~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          189 CKNGDGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             C-----CTTHHHHHHHHHTCTT
T ss_pred             cCcccCHHHHHHHHHHHHhccc
Confidence            9999999999999999886543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=4.7e-26  Score=167.84  Aligned_cols=156  Identities=17%  Similarity=0.162  Sum_probs=114.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChh------hHhhcc--
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPA------MQRLSI--   76 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--   76 (200)
                      .+.++|+++|++|||||||+|+|++..+.....|..... .....+......+.+|||||+..+..      +...++  
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVE-KKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCE-EEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEE-EEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            457899999999999999999999877543333332211 12222222346899999999887653      335555  


Q ss_pred             ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700          77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK  156 (200)
Q Consensus        77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  156 (200)
                      ..+|++++|+|+++.++..   .|+..+..        ...|+++|+||+|+.+..... .....+....+++++++||+
T Consensus        82 ~~~d~ii~V~D~t~~~~~~---~~~~~l~~--------~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~  149 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSL---YLLLEILE--------MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSV  149 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHH---HHHHHHHT--------TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTT
T ss_pred             cCCCEEEEEeCCCchhhHH---HHHHHHHh--------cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEee
Confidence            5899999999999875432   34444432        348999999999987655443 23567778889999999999


Q ss_pred             CCCcHHHHHHHHHHHHh
Q psy8700         157 TNHNVKELFAELLNLEK  173 (200)
Q Consensus       157 ~~~~i~~~~~~i~~~~~  173 (200)
                      +|.|+.++|+.+.+.+.
T Consensus       150 ~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          150 TGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHhh
Confidence            99999999999999775

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=1.5e-26  Score=162.98  Aligned_cols=157  Identities=18%  Similarity=0.225  Sum_probs=110.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCC-----------CCCChhhHhhcc
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG-----------SHQFPAMQRLSI   76 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~~   76 (200)
                      +||+++|++|||||||++++.+..+...+.++..... ......    .+.+|||||           ++.+......++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~-~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI-IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC-EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee-EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            6999999999999999999999887666666544222 222222    589999999           344556666677


Q ss_pred             cc-CCEEEEEeeCCChhHHHHH-HHHHHH--------HHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHh
Q psy8700          77 SK-GHAFILVYSCTSRQSLEEL-RPIWEV--------IRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW  146 (200)
Q Consensus        77 ~~-~~~~i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  146 (200)
                      .. ++++++++++.+..++..+ ..|...        +.....    ....|+++|+||+|+....   ......+....
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~  149 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR----ELDIPTIVAVNKLDKIKNV---QEVINFLAEKF  149 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH----HTTCCEEEEEECGGGCSCH---HHHHHHHHHHH
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHH----hcCCceEEEeehHhccCcH---HHHHHHHHHHh
Confidence            66 6666666666666677665 333321        112110    2458999999999997654   34456666777


Q ss_pred             CCc-------EEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         147 GCH-------FMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       147 ~~~-------~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      +.+       ++++||++|.|++++|+++.+.+.+..
T Consensus       150 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          150 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             hhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            764       799999999999999999999875543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=6e-26  Score=168.22  Aligned_cols=154  Identities=17%  Similarity=0.160  Sum_probs=113.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh------hhHhhccc--
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP------AMQRLSIS--   77 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~--   77 (200)
                      ..++|+++|++|||||||+|+|++........|..... .....++. ...+.+|||||+..+.      .+...++.  
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~-~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE-RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS-CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE-EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            46899999999999999999999865332222322211 22333444 5579999999988765      45566665  


Q ss_pred             cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC
Q psy8700          78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT  157 (200)
Q Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  157 (200)
                      .+|++++|+|+++.++.   ..|...+.+        ...|+++++||+|+....... .....+....+++++++||++
T Consensus        80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--------~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~  147 (272)
T 3b1v_A           80 RADSILNVVDATNLERN---LYLTTQLIE--------TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALK  147 (272)
T ss_dssp             CCSEEEEEEEGGGHHHH---HHHHHHHHH--------TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTT
T ss_pred             CCCEEEEEecCCchHhH---HHHHHHHHh--------cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccC
Confidence            59999999999886543   344444443        248999999999987654433 345667778899999999999


Q ss_pred             CCcHHHHHHHHHHHHh
Q psy8700         158 NHNVKELFAELLNLEK  173 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~~  173 (200)
                      |.|++++|+++.+.+.
T Consensus       148 g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          148 QTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             TBSHHHHHHHHHHSCT
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.93  E-value=1.5e-25  Score=158.37  Aligned_cols=158  Identities=19%  Similarity=0.157  Sum_probs=107.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEE-EEeCCcEEEEEEEeCCC----------CCCChhhH
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV-ISCNKNICTLQITDTTG----------SHQFPAMQ   72 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~G----------~~~~~~~~   72 (200)
                      ++..+||+++|++|||||||+++|++... ..+.++.+.+.... ...+.   .+.+|||||          .+.+..+.
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence            46679999999999999999999998763 23333333332222 22232   478999999          44455666


Q ss_pred             hhccccC---CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH--HHHHHHHHH-h
Q psy8700          73 RLSISKG---HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA--AEGEAEAKM-W  146 (200)
Q Consensus        73 ~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~-~  146 (200)
                      ..++..+   +++++|+|.++..+.... .++..+...        ..|+++|+||+|+.+..+...  .....+... .
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~--------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  166 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKSL--------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG  166 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT--------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHHc--------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence            6677665   999999998875433332 222223322        379999999999976443222  223333333 3


Q ss_pred             CCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         147 GCHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       147 ~~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      +++++++||++|.|++++|++|.+.+.+
T Consensus       167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          167 EYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            3699999999999999999999998754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=2.8e-25  Score=163.47  Aligned_cols=150  Identities=19%  Similarity=0.250  Sum_probs=110.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChh----------hHhhcc
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPA----------MQRLSI   76 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~   76 (200)
                      .+|+++|.+|||||||+|+|.+........|+.. +.....+..++.  .+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999998765433334333 222334444444  899999999877653          556666


Q ss_pred             --ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700          77 --SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS  154 (200)
Q Consensus        77 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  154 (200)
                        .++|++++|+|+++.++...+..+   +.        ....|+++|+||+|+....... .....+....+++++++|
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~--------~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~S  147 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LF--------ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQ  147 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HT--------TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HH--------HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEE
Confidence              889999999999986554332222   22        1358999999999987654332 224456777899999999


Q ss_pred             ccCCCcHHHHHHHHHHH
Q psy8700         155 AKTNHNVKELFAELLNL  171 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~  171 (200)
                      |++|.|++++++++.+.
T Consensus       148 A~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          148 AHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             GGGTBSHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHhh
Confidence            99999999999999886

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=3.5e-25  Score=166.47  Aligned_cols=160  Identities=24%  Similarity=0.286  Sum_probs=110.2

Q ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCC-CcccceeEEEEeCCcEEEEEEEeCCCCCC--------Chh
Q psy8700           1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIP-TIEDTYRQVISCNKNICTLQITDTTGSHQ--------FPA   70 (200)
Q Consensus         1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~   70 (200)
                      ||+.-...+|+++|.+|||||||+|+|++..+.. ...+ ++.........  ....++.+|||||+..        +..
T Consensus         1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~~   78 (301)
T 1wf3_A            1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQ   78 (301)
T ss_dssp             --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHH
T ss_pred             CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE--eCCcEEEEecCccccchhhHHHHHHHH
Confidence            6777778899999999999999999999877632 1222 22222222222  2346899999999876        345


Q ss_pred             hHhhccccCCEEEEEeeCCChhHHHHHHHHH-HHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-hC-
Q psy8700          71 MQRLSISKGHAFILVYSCTSRQSLEELRPIW-EVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-WG-  147 (200)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~-  147 (200)
                      ....++..+|++++|+|++++.+...  .|+ ..+...      .+..|+++|+||+|+.+....    ....... .+ 
T Consensus        79 ~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~------~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~  146 (301)
T 1wf3_A           79 EVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPL------VGKVPILLVGNKLDAAKYPEE----AMKAYHELLPE  146 (301)
T ss_dssp             HHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG------TTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTT
T ss_pred             HHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhh------cCCCCEEEEEECcccCCchHH----HHHHHHHhcCc
Confidence            56678899999999999988654332  333 333322      135899999999999754330    1111122 23 


Q ss_pred             CcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         148 CHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       148 ~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      .+++++||++|.|++++++.+.+.+.+
T Consensus       147 ~~~~~iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          147 AEPRMLSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             SEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence            478999999999999999999987643

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=2.8e-25  Score=165.19  Aligned_cols=155  Identities=15%  Similarity=0.188  Sum_probs=112.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCCh----------hhHhhc
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFP----------AMQRLS   75 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~~   75 (200)
                      .++|+++|.+|||||||+|+|++..+.....++.. ......+...+  ..+.+|||||+..+.          .....+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            68999999999999999999998765333333332 22233344444  468899999987765          223333


Q ss_pred             c--ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEe
Q psy8700          76 I--SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMET  153 (200)
Q Consensus        76 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v  153 (200)
                      +  ..+|++++|+|+++.++..   .+...+.+..        .|+++|+||+|+.+..... .....+....+++++++
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~~~--------~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~  148 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNL---YLTLQLLELG--------IPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPL  148 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHH---HHHHHHHHHT--------CCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEEC
T ss_pred             HhhcCCCEEEEEecCCChHHHH---HHHHHHHhcC--------CCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEE
Confidence            3  6899999999999865433   3333444433        7999999999986544322 23456677789999999


Q ss_pred             cccCCCcHHHHHHHHHHHHhcc
Q psy8700         154 SAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ||++|.|++++++.|.+.+...
T Consensus       149 SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          149 VSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             CCGGGHHHHHHHHHHHTCCCCC
T ss_pred             EcCCCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999877543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=1.1e-24  Score=161.91  Aligned_cols=156  Identities=17%  Similarity=0.164  Sum_probs=115.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccc-ceeEEEEeCCcEEEEEEEeCCCCCCChh------hHhhcc--c
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISCNKNICTLQITDTTGSHQFPA------MQRLSI--S   77 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~   77 (200)
                      .++|+++|++|||||||+|+|++..+.....++... .........+.  .+.+|||||+..+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            589999999999999999999987664344444332 22333444443  699999999887655      555566  6


Q ss_pred             cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC
Q psy8700          78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT  157 (200)
Q Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  157 (200)
                      ++|++++|+|.++..   ....++..+...       ...|+++|+||+|+.+...... ....+.+..+++++++||++
T Consensus        81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~-------~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~  149 (271)
T 3k53_A           81 NADVIVDIVDSTCLM---RNLFLTLELFEM-------EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKK  149 (271)
T ss_dssp             CCSEEEEEEEGGGHH---HHHHHHHHHHHT-------TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGG
T ss_pred             CCcEEEEEecCCcch---hhHHHHHHHHhc-------CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCC
Confidence            799999999998863   233444444332       2279999999999865443332 25667778899999999999


Q ss_pred             CCcHHHHHHHHHHHHhcc
Q psy8700         158 NHNVKELFAELLNLEKNR  175 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~~~~  175 (200)
                      |.|+.++++.+.+.+...
T Consensus       150 g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          150 GEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             TBTHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHhcc
Confidence            999999999999987544

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=5.3e-25  Score=158.97  Aligned_cols=164  Identities=14%  Similarity=0.075  Sum_probs=106.3

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeC-CcEEEEEEEeCCCCCC----------Chhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCN-KNICTLQITDTTGSHQ----------FPAM   71 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~D~~G~~~----------~~~~   71 (200)
                      .+..++|+++|.+|||||||+|+|++........+..+.+.. ...... .....+.+|||||...          +..+
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            456799999999999999999999987621111111111111 122223 3345799999999543          2455


Q ss_pred             Hhhcccc---CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH---HHHHHHH
Q psy8700          72 QRLSISK---GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE---GEAEAKM  145 (200)
Q Consensus        72 ~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~  145 (200)
                      ...++..   +|++++|+|.+++.+... ..++..+..        ...|+++|+||+|+.+..+.....   ...+...
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~--------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~  176 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP--------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY  176 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG--------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh--------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence            5566665   788999999987543222 233333332        347999999999997654422111   1122222


Q ss_pred             ------hCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         146 ------WGCHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       146 ------~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                            .+.+++++||++|.|+.+++++|.+.+....
T Consensus       177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence                  4468999999999999999999999886543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=2e-24  Score=170.37  Aligned_cols=161  Identities=20%  Similarity=0.232  Sum_probs=111.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCC----------CCChhhH
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGS----------HQFPAMQ   72 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~   72 (200)
                      +..+||+++|.+|||||||+|+|++....  ..+..++.+.....+..++.  .+.+|||||+          +.+..+.
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            46799999999999999999999987642  22222332333344455554  5899999996          3333333


Q ss_pred             h-hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH-HH----HHHh
Q psy8700          73 R-LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE-AE----AKMW  146 (200)
Q Consensus        73 ~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~----~~~~  146 (200)
                      . .++..+|++++|+|++++.+.++. .|+..+..        ...|+++|+||+|+.+.......+.. ..    ....
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~  321 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD  321 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGT
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCC
Confidence            3 478889999999999998887774 45544443        34899999999999865543222221 11    2223


Q ss_pred             CCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         147 GCHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       147 ~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      +++++++||++|.|+.++|+.+.+.+..+.
T Consensus       322 ~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          322 YAPILFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             TSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             CCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence            679999999999999999999999886543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=5e-24  Score=168.81  Aligned_cols=155  Identities=20%  Similarity=0.223  Sum_probs=98.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhH--------hhcc
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQ--------RLSI   76 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~~   76 (200)
                      .++|+++|++|||||||+|+|++...  ...+..++.+.....+..++  ..+.+|||||+..+....        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            58999999999999999999998642  22222333333344455554  479999999987655333        4478


Q ss_pred             ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700          77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK  156 (200)
Q Consensus        77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  156 (200)
                      ..+|++++|+|++++.++.....+...+...       .+.|+++|+||+|+.+.....   ...+......+++++||+
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-------~~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAk  380 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAH-------PAAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISAL  380 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-------TTSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTT
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhc-------CCCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEEC
Confidence            8999999999999988775443433333322       248999999999997655431   122333334789999999


Q ss_pred             CCCcHHHHHHHHHHHHh
Q psy8700         157 TNHNVKELFAELLNLEK  173 (200)
Q Consensus       157 ~~~~i~~~~~~i~~~~~  173 (200)
                      +|.|+++++++|.+.+.
T Consensus       381 tg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          381 NGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TTBSHHHHHHHHTHHHH
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999999886

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=5.4e-25  Score=158.44  Aligned_cols=148  Identities=16%  Similarity=0.153  Sum_probs=104.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCC---cCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhcccc--
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES---YIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISK--   78 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~--   78 (200)
                      +...++|+++|++|+|||||+++|.+..+...   +.++...        +.....+.+|||||++.+...+..++..  
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET--------TGGGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE--------EeeCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            45679999999999999999999998775432   2222221        1134579999999999998888888877  


Q ss_pred             --CCEEEEEeeCC-ChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC------HHHHHHHHHHhCCc
Q psy8700          79 --GHAFILVYSCT-SRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS------AAEGEAEAKMWGCH  149 (200)
Q Consensus        79 --~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~  149 (200)
                        ++++++|+|++ ++.++.....|+..+...... ......|+++|+||+|+.+.....      ..+...+....+++
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES-SCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHH-HSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccc-cccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence              89999999999 888888888888777654310 002568999999999998765433      23344555566778


Q ss_pred             EEEecccCCCc
Q psy8700         150 FMETSAKTNHN  160 (200)
Q Consensus       150 ~~~vSa~~~~~  160 (200)
                      ++++||++|.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            99999998874

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=4.6e-24  Score=169.16  Aligned_cols=163  Identities=20%  Similarity=0.268  Sum_probs=114.8

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCC----------CCCChhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTG----------SHQFPAM   71 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~   71 (200)
                      ....++|+++|.+|+|||||+++|++...  ...+..++.+.....+..++.  .+.+|||||          ++.+..+
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            35679999999999999999999997542  223333333333444555554  799999999          4555555


Q ss_pred             Hh-hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHh----
Q psy8700          72 QR-LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW----  146 (200)
Q Consensus        72 ~~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----  146 (200)
                      .. .++..+|++++|+|++++..... ..++..+..        ...|+++|+||+|+.+..+....+........    
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~--------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  340 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE--------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL  340 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH--------TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH--------cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC
Confidence            44 37789999999999988654332 344444443        33899999999999876554444444444433    


Q ss_pred             -CCcEEEecccCCCcHHHHHHHHHHHHhccch
Q psy8700         147 -GCHFMETSAKTNHNVKELFAELLNLEKNRNI  177 (200)
Q Consensus       147 -~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~  177 (200)
                       +++++++||++|.|+.++|+.+.+.+..+..
T Consensus       341 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          341 DYAPILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             TTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence             5799999999999999999999998865543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=5.4e-23  Score=158.30  Aligned_cols=163  Identities=20%  Similarity=0.180  Sum_probs=116.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCCh---------hhHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFP---------AMQRL   74 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~~   74 (200)
                      ...++|+++|++|||||||+++|.+........+... ..........  ...+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            5678999999999999999999998664222112111 1111222222  3579999999975421         12224


Q ss_pred             ccccCCEEEEEeeCCChh--HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEE
Q psy8700          75 SISKGHAFILVYSCTSRQ--SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFME  152 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (200)
                      +...+|++++|+|++++.  ++.....|+..+....      ...|+++|+||+|+.+....  .....+....++++++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~------~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~  314 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF------KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIK  314 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT------TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEE
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc------CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEE
Confidence            455689999999998876  6677777777776654      25899999999999765432  2334445567889999


Q ss_pred             ecccCCCcHHHHHHHHHHHHhccch
Q psy8700         153 TSAKTNHNVKELFAELLNLEKNRNI  177 (200)
Q Consensus       153 vSa~~~~~i~~~~~~i~~~~~~~~~  177 (200)
                      +||++|.|+++++++|.+.+.....
T Consensus       315 iSA~~g~gi~~l~~~i~~~l~~~~~  339 (357)
T 2e87_A          315 ISALKGTGIDLVKEEIIKTLRPLAE  339 (357)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998865443

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.90  E-value=1e-22  Score=159.09  Aligned_cols=165  Identities=16%  Similarity=0.108  Sum_probs=116.0

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCc--CCCc---------ccceeE--------EEEeCCcEEEEEEEeCC
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESY--IPTI---------EDTYRQ--------VISCNKNICTLQITDTT   63 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~--~~~~---------~~~~~~--------~~~~~~~~~~~~~~D~~   63 (200)
                      .+.+.++|+++|.+++|||||+++|++.......  ..+.         ...+..        ..........+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            4567899999999999999999999874322110  0000         000000        00001123689999999


Q ss_pred             CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH
Q psy8700          64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA  143 (200)
Q Consensus        64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  143 (200)
                      |++.+.......+..+|++++|+|++++.++.+...++..+.....       .|+++++||+|+.+..+.... .....
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~-------~~iivviNK~Dl~~~~~~~~~-~~~i~  155 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-------KNLIIVQNKVDVVSKEEALSQ-YRQIK  155 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-------CCEEEEEECGGGSCHHHHHHH-HHHHH
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC-------CCEEEEEECccccchHHHHHH-HHHHH
Confidence            9999999999999999999999999988766676777766555442       589999999999765432111 11121


Q ss_pred             HHh------CCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         144 KMW------GCHFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       144 ~~~------~~~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ...      +++++++||++|.|+.++++.|.+.+...
T Consensus       156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence            221      56899999999999999999999877543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.90  E-value=1.1e-23  Score=160.55  Aligned_cols=161  Identities=21%  Similarity=0.208  Sum_probs=115.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCC----CCChhhHhhccc---cC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGS----HQFPAMQRLSIS---KG   79 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----~~~~~~~~~~~~---~~   79 (200)
                      .+|+|+|.+|||||||+++|++.... ..+..++.......+..++ ...+.+|||||+    ..+..+...+++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            36899999999999999999876532 1222122222222333333 247999999994    344445555544   59


Q ss_pred             CEEEEEeeCCC---hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC--CcEEEec
Q psy8700          80 HAFILVYSCTS---RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG--CHFMETS  154 (200)
Q Consensus        80 ~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~vS  154 (200)
                      +++++|+|+++   ++++..+..|+..+.....   .....|+++|+||+|+....    .....+....+  .+++++|
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~---~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iS  310 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL---RLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPIS  310 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS---STTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCS
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhh---hhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEE
Confidence            99999999998   7888888888888877542   23568999999999987543    22344445555  6899999


Q ss_pred             ccCCCcHHHHHHHHHHHHhccc
Q psy8700         155 AKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      |+++.|+++++++|.+.+.+..
T Consensus       311 A~tg~gi~eL~~~l~~~l~~~~  332 (342)
T 1lnz_A          311 AVTREGLRELLFEVANQLENTP  332 (342)
T ss_dssp             SCCSSTTHHHHHHHHHHHTSCC
T ss_pred             CCCCcCHHHHHHHHHHHHhhCc
Confidence            9999999999999999886543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.90  E-value=5.7e-24  Score=162.58  Aligned_cols=119  Identities=18%  Similarity=0.127  Sum_probs=96.7

Q ss_pred             EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC----------hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEe
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS----------RQSLEELRPIWEVIRETKGGANELASIPIMLVG  123 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  123 (200)
                      .+.+++|||+|++.++.++..++.+++++|||+|+++          .+++.....|+..+.....    ..+.|++|++
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~----~~~~piiLv~  267 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW----FTDTSIILFL  267 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG----GTTSEEEEEE
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc----ccCCcEEEEE
Confidence            5789999999999999999999999999999999999          5678888888877766432    3568999999


Q ss_pred             eCCCCCccc---------------ccCHHHHHHHHH-----------HhCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         124 NKCDETENR---------------EVSAAEGEAEAK-----------MWGCHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       124 nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      ||.|+...+               .....++..+..           ..++.+++|||+++.||.++|+++.+.+...+
T Consensus       268 NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          268 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             ECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             ECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence            999985432               234455556554           24568999999999999999999999886543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=3.7e-24  Score=167.05  Aligned_cols=158  Identities=18%  Similarity=0.195  Sum_probs=111.5

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh-------Hhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM-------QRL   74 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-------~~~   74 (200)
                      ++..++|+++|..|+|||||+++|++..+.  ..+..++.......+...+. ..+.+|||||++.+..+       ...
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence            456799999999999999999999987652  22222222333344444433 37999999998876543       455


Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS  154 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  154 (200)
                      ++..+|++++|+|+...   .....|+..+...        +.|+++|+||+|+.+....  .....+....+++++++|
T Consensus       110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~--------~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vS  176 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM--------EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVS  176 (423)
T ss_dssp             HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT--------TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCS
T ss_pred             HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc--------CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEE
Confidence            78899999999998332   3335566555553        3899999999999876543  344555556788999999


Q ss_pred             ccCCCcHHHHHHHHHHHHhcc
Q psy8700         155 AKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~~~~  175 (200)
                      |++|.|++++|+.|.+.+.+.
T Consensus       177 Aktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          177 ALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             SCCTTSTTTHHHHHHHHSCCC
T ss_pred             CCCCCCHHHHHHHHHHhhhhh
Confidence            999999999999999988543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=1.7e-22  Score=159.45  Aligned_cols=152  Identities=19%  Similarity=0.260  Sum_probs=101.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC---------hhhHhhcc
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF---------PAMQRLSI   76 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~   76 (200)
                      .+|+++|.||||||||+|+|++....  ..+..++.+.....+..++.  .+++|||||++..         ..+...++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999986632  22222222333344455554  6899999997752         34567789


Q ss_pred             ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHH-HHHHHHhCC-cEEEec
Q psy8700          77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG-EAEAKMWGC-HFMETS  154 (200)
Q Consensus        77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~vS  154 (200)
                      +.+|++++|+|+.++.+..+ ..+...+...        ..|+++|+||+|+....   .... ..+. ..++ +++++|
T Consensus        80 ~~ad~il~V~D~~~~~~~~d-~~i~~~l~~~--------~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iS  146 (439)
T 1mky_A           80 READLVLFVVDGKRGITKED-ESLADFLRKS--------TVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVS  146 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHH-HHHHHHHHHH--------TCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECB
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHHc--------CCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEe
Confidence            99999999999987654333 1222223322        37999999999985421   1111 2222 4566 789999


Q ss_pred             ccCCCcHHHHHHHHHHHHhc
Q psy8700         155 AKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~~~  174 (200)
                      |++|.|+.++++.+.+.+.+
T Consensus       147 A~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          147 AEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHhccc
Confidence            99999999999999998854

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.89  E-value=1.2e-22  Score=161.07  Aligned_cols=151  Identities=22%  Similarity=0.242  Sum_probs=109.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCC-CCh--------hhHhhc
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSH-QFP--------AMQRLS   75 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~~~--------~~~~~~   75 (200)
                      .++|+++|.||||||||+|+|++...  ...+..++.+.....+..++.  .+.+|||||+. .+.        .....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            48999999999999999999998653  233333444444555666554  78999999987 543        234567


Q ss_pred             cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700          76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSA  155 (200)
Q Consensus        76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  155 (200)
                      +..+|++++|+|++++.++.... ++..    .      ...|+++|+||+|+.+.  ....+...+. ..+++++++||
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~----l------~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSA  386 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILER----I------KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISA  386 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHH----H------TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEG
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHH----h------cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEEC
Confidence            88999999999999887765532 2222    1      24799999999999653  2222222221 23368999999


Q ss_pred             cCCCcHHHHHHHHHHHHh
Q psy8700         156 KTNHNVKELFAELLNLEK  173 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~~~  173 (200)
                      ++|.|+++++++|.+.+.
T Consensus       387 ktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          387 LKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             GGTCCHHHHHHHHHHHTH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999999765

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.89  E-value=1.8e-23  Score=159.72  Aligned_cols=119  Identities=16%  Similarity=0.111  Sum_probs=91.7

Q ss_pred             cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCC----------ChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700          53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCT----------SRQSLEELRPIWEVIRETKGGANELASIPIMLV  122 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  122 (200)
                      ..+.+++|||+|+++++.++..++++++++|+|+|++          +.+++.....|+..+.....    .++.|++|+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~----~~~~piiLv  256 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC----FEKTSFMLF  256 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGG----GSSCEEEEE
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccc----cCCCeEEEE
Confidence            5689999999999999999999999999999999998          78889998888887776432    356899999


Q ss_pred             eeCCCCCcccc--c-------------------CHHHHHHHHHH----------------hCCcEEEecccCCCcHHHHH
Q psy8700         123 GNKCDETENRE--V-------------------SAAEGEAEAKM----------------WGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus       123 ~nK~Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +||+|+.+.+.  .                   ...++..+...                ..+.+++|||+++.||+++|
T Consensus       257 gNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF  336 (354)
T 2xtz_A          257 LNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTF  336 (354)
T ss_dssp             EECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred             EECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHH
Confidence            99999854321  1                   12333444221                12346899999999999999


Q ss_pred             HHHHHHHhcc
Q psy8700         166 AELLNLEKNR  175 (200)
Q Consensus       166 ~~i~~~~~~~  175 (200)
                      +++.+.+...
T Consensus       337 ~~v~~~I~~~  346 (354)
T 2xtz_A          337 KLVDETLRRR  346 (354)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987544

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.89  E-value=1.7e-23  Score=157.82  Aligned_cols=120  Identities=14%  Similarity=0.105  Sum_probs=95.3

Q ss_pred             cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCC----------ChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700          53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCT----------SRQSLEELRPIWEVIRETKGGANELASIPIMLV  122 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  122 (200)
                      ..+.+++|||+|+++++.++..++++++++|+|+|++          +.+++.....|+..+.....    ..+.|++++
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~----~~~~~iiL~  240 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW----FQNSSVILF  240 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG----GTTCEEEEE
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc----cCCceEEEE
Confidence            4478999999999999999999999999999999664          66778877777777765442    467899999


Q ss_pred             eeCCCCCccc----------------ccCHHHHHHHHH----------HhCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         123 GNKCDETENR----------------EVSAAEGEAEAK----------MWGCHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       123 ~nK~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      +||.|+.+.+                .....++..+..          ..++.+++|||+++.||+.+|+.+.+.+.+.+
T Consensus       241 ~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          241 LNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             EECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             EECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            9999986543                334455555532          23457889999999999999999999886554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=3.6e-22  Score=157.59  Aligned_cols=161  Identities=17%  Similarity=0.131  Sum_probs=105.8

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh-----------
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM-----------   71 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----------   71 (200)
                      ...++|+++|++|||||||+|+|++...  ...+..++.+.....+..++.  .+.+|||+|+.+....           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            4568999999999999999999998653  122222222333345556665  6889999997433221           


Q ss_pred             -HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH-HH----HHH
Q psy8700          72 -QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE-AE----AKM  145 (200)
Q Consensus        72 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~----~~~  145 (200)
                       ...++..+|++++++|++++.+.... .+...+..        ...|+++|+||+|+.+.......+.. ..    ...
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  326 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--------RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFI  326 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--------TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGG
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--------cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccC
Confidence             13456678999999999876655442 22232322        33799999999999765443222221 11    222


Q ss_pred             hCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         146 WGCHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       146 ~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      .+++++++||++|.|+.++|+.+.+.+.+..
T Consensus       327 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          327 DYSPLIFTSADKGWNIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             TTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence            3568999999999999999999998876543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.88  E-value=7.7e-23  Score=156.83  Aligned_cols=119  Identities=16%  Similarity=0.152  Sum_probs=88.9

Q ss_pred             EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC----------hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEe
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS----------RQSLEELRPIWEVIRETKGGANELASIPIMLVG  123 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  123 (200)
                      .+.+++|||+|++.++..+..++.+++++|||+|+++          .+++.....|+..+.....    ..+.|+++++
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~----~~~~piILv~  275 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV----FSNVSIILFL  275 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG----GTTSEEEEEE
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh----hCCCCEEEEE
Confidence            4689999999999999999999999999999999999          7789998888888776432    3568999999


Q ss_pred             eCCCCCccc----------------ccCHHHHHHHHH-----------HhCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         124 NKCDETENR----------------EVSAAEGEAEAK-----------MWGCHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       124 nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      ||.|+.+.+                .....++..+..           ..++.+++|||+++.||.++|+++.+.+...+
T Consensus       276 NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~  355 (362)
T 1zcb_A          276 NKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  355 (362)
T ss_dssp             ECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence            999986432                134444544431           23567899999999999999999999885443

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=2.9e-22  Score=158.17  Aligned_cols=152  Identities=20%  Similarity=0.272  Sum_probs=100.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhh--------Hhhcc
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAM--------QRLSI   76 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~   76 (200)
                      .++|+++|++|||||||+|+|++...  ...+..++.+.....+..++.  .+.+|||||+..+...        ...++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            57999999999999999999998643  222222322333344555554  7899999997654432        23367


Q ss_pred             ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700          77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK  156 (200)
Q Consensus        77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  156 (200)
                      ..+|++++|+|.+++.+... ..++..+          ...|+++|+||+|+.+........  .+  ..+.+++++||+
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l----------~~~piivV~NK~Dl~~~~~~~~~~--~~--~~~~~~i~iSAk  366 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQV----------KHRPLILVMNKIDLVEKQLITSLE--YP--ENITQIVHTAAA  366 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHH----------TTSCEEEEEECTTSSCGGGSTTCC--CC--TTCCCEEEEBTT
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhc----------cCCcEEEEEECCCCCcchhhHHHH--Hh--ccCCcEEEEECC
Confidence            88999999999998765544 2333222          226999999999997765433110  00  135689999999


Q ss_pred             CCCcHHHHHHHHHHHHhcc
Q psy8700         157 TNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       157 ~~~~i~~~~~~i~~~~~~~  175 (200)
                      +|.|+++++++|.+.+...
T Consensus       367 tg~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          367 QKQGIDSLETAILEIVQTG  385 (462)
T ss_dssp             TTBSHHHHHHHHHHHHTTS
T ss_pred             CCCCHHHHHHHHHHHHhcc
Confidence            9999999999999988654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=4.6e-21  Score=139.88  Aligned_cols=165  Identities=19%  Similarity=0.230  Sum_probs=103.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCC--cc-cceeEEEEeCCcEEEEEEEeCCCCCC-----------Ch
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT--IE-DTYRQVISCNKNICTLQITDTTGSHQ-----------FP   69 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~D~~G~~~-----------~~   69 (200)
                      ++..++|+++|++|||||||+|+|++........+.  .. .........++  ..+.+|||||...           +.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence            456799999999999999999999997764443331  22 22233444444  3789999999543           22


Q ss_pred             hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC------HHHHHHHH
Q psy8700          70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS------AAEGEAEA  143 (200)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~  143 (200)
                      .....++..+|++++|+|+++... .. ..++..+....+   .....|++||+||+|+.......      ......+.
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~-~~-~~~l~~~~~~~~---~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~  178 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTE-EE-HKATEKILKMFG---ERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLM  178 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSS-HH-HHHHHHHHHHHH---HHHGGGEEEEEECGGGC------------CHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCH-HH-HHHHHHHHHHhh---hhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHH
Confidence            334445567899999999875433 11 222323322211   01225999999999987654433      12456667


Q ss_pred             HHhCCcEEEecccCC-----CcHHHHHHHHHHHHhcc
Q psy8700         144 KMWGCHFMETSAKTN-----HNVKELFAELLNLEKNR  175 (200)
Q Consensus       144 ~~~~~~~~~vSa~~~-----~~i~~~~~~i~~~~~~~  175 (200)
                      ..++..++.+++..+     .++.++|+.+.+.+.+.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          179 DIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             HHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            778888888876643     68999999998888653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.88  E-value=2.3e-22  Score=151.25  Aligned_cols=157  Identities=18%  Similarity=0.130  Sum_probs=103.0

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCC-CcccceeEEEEeCCcEEEEEEEeCCCCC-CC--------hhhHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIP-TIEDTYRQVISCNKNICTLQITDTTGSH-QF--------PAMQRL   74 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~~--------~~~~~~   74 (200)
                      ...+|+++|++|||||||+|+|++..... ...+ ++.......+.  ....++.+|||||.. ..        ......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~--~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT--EGAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEE--ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEE--ECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            34689999999999999999999876531 1112 21111122222  234589999999987 22        223345


Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEe
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMET  153 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v  153 (200)
                      ++..+|++++|+|.++ -+  ....+...  ...     ....|+++++||+|+.+...........+....+. .++++
T Consensus        85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~--~l~-----~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~i  154 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR-WT--PDDEMVLN--KLR-----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPI  154 (301)
T ss_dssp             CCCCEEEEEEEEETTC-CC--HHHHHHHH--HHH-----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred             HHhcCCEEEEEEeCCC-CC--HHHHHHHH--HHH-----hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEE
Confidence            6778999999999976 22  22222211  112     13589999999999876222112223334444565 79999


Q ss_pred             cccCCCcHHHHHHHHHHHHhc
Q psy8700         154 SAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~~~  174 (200)
                      ||+++.|+.++++.+.+.+.+
T Consensus       155 SA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          155 SAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             CTTTTTTHHHHHHHHHTTCCB
T ss_pred             ECCCCCCHHHHHHHHHHhCCc
Confidence            999999999999999987654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.87  E-value=9.2e-22  Score=145.29  Aligned_cols=164  Identities=18%  Similarity=0.191  Sum_probs=104.3

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCC-CCCCcCCC-cc-cceeEEEEeCCcEEEEEEEeCCCCCCCh-----------
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT-FRESYIPT-IE-DTYRQVISCNKNICTLQITDTTGSHQFP-----------   69 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----------   69 (200)
                      ....++|+++|.+|||||||+++|++.. +...+.++ .. .........++  ..+.+|||||+..+.           
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            4467999999999999999999999876 33333333 22 22233333343  479999999965432           


Q ss_pred             hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEee-CCCCCcccccCH-------HHHHH
Q psy8700          70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN-KCDETENREVSA-------AEGEA  141 (200)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~  141 (200)
                      .....++..+|++++|+|+++...  ....++..+....+   .....|+++++| |+|+.+.. ...       .....
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~---~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~  170 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTS--QDQQAAQRVKEIFG---EDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSK  170 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCH--HHHHHHHHHHHHHC---GGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCH--HHHHHHHHHHHHhC---chhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHH
Confidence            222336788999999999986221  22234444555432   011356777776 99997432 111       11223


Q ss_pred             HHHHhCCc---E--EEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         142 EAKMWGCH---F--METSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       142 ~~~~~~~~---~--~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      .....+..   +  +++||+++.|+.++|+.|.+.+...
T Consensus       171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            44444432   2  7899999999999999999988653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=8.6e-21  Score=148.43  Aligned_cols=164  Identities=16%  Similarity=0.119  Sum_probs=100.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCC---CCCCcCC--CcccceeE-EEEe-------------C--C----cEEEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT---FRESYIP--TIEDTYRQ-VISC-------------N--K----NICTLQ   58 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~~   58 (200)
                      +...++|+++|..++|||||+++|.+..   +.....+  |....+.. ....             +  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999998543   2222222  22211111 1110             1  1    137899


Q ss_pred             EEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--H
Q psy8700          59 ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS--A  136 (200)
Q Consensus        59 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~  136 (200)
                      +|||||++.+.......+..+|++++|+|++++....+....+..+.. .      ...|+++++||+|+.+.....  .
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l------~~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-L------GIDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-T------TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-c------CCCeEEEEEEccCCCCHHHHHHHH
Confidence            999999988888777788889999999999964311121222222222 2      225899999999997654321  1


Q ss_pred             HHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         137 AEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       137 ~~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      .+...+...   .+++++++||++|.|++++++.|.+.+..
T Consensus       158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            222333332   35689999999999999999999987653

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.86  E-value=5.3e-22  Score=150.21  Aligned_cols=119  Identities=18%  Similarity=0.126  Sum_probs=94.7

Q ss_pred             CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCC----------ChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEE
Q psy8700          52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCT----------SRQSLEELRPIWEVIRETKGGANELASIPIML  121 (200)
Q Consensus        52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  121 (200)
                      ...+.+++|||+|+++++.++..++++++++|+|+|++          +.+++.....|+..+.....    ..+.|+++
T Consensus       158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~----~~~~piiL  233 (340)
T 4fid_A          158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF----LKGAVKLI  233 (340)
T ss_dssp             SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG----GTTSEEEE
T ss_pred             eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc----cCCCeEEE
Confidence            34568999999999999999999999999999999998          77889998888888876542    46789999


Q ss_pred             EeeCCCCCcccc---------------cCHHHHHHHHH-Hh--------------------------CCcEEEecccCCC
Q psy8700         122 VGNKCDETENRE---------------VSAAEGEAEAK-MW--------------------------GCHFMETSAKTNH  159 (200)
Q Consensus       122 v~nK~Dl~~~~~---------------~~~~~~~~~~~-~~--------------------------~~~~~~vSa~~~~  159 (200)
                      ++||.|+.+.+.               ....++..+.. ..                          .+.+++|||++..
T Consensus       234 v~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~  313 (340)
T 4fid_A          234 FLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGS  313 (340)
T ss_dssp             EEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHH
T ss_pred             EEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcH
Confidence            999999854211               12233333221 12                          3578899999999


Q ss_pred             cHHHHHHHHHHHHhc
Q psy8700         160 NVKELFAELLNLEKN  174 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~  174 (200)
                      ||+.+|+.+.+.+..
T Consensus       314 nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          314 NIKRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998876

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.86  E-value=2.7e-22  Score=158.16  Aligned_cols=152  Identities=18%  Similarity=0.166  Sum_probs=97.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee--EEEEeCCcEEEEEEEeCCCCC--------CChhhHhhcc
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGSH--------QFPAMQRLSI   76 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~   76 (200)
                      ..+|+++|.+|||||||+|+|++....  .....++.++  ...........+.+|||||++        .+..+...++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~--~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERIS--IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCce--eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            368999999999999999999986542  1112222221  122223233479999999986        4556677788


Q ss_pred             ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecc
Q psy8700          77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSA  155 (200)
Q Consensus        77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa  155 (200)
                      ..+|++++|+|+.++.+..+  .++..+..       ....|+++|+||+|+.......    ..+. ..++ +++++||
T Consensus        81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~-------~~~~pvilv~NK~D~~~~~~~~----~~~~-~lg~~~~~~iSA  146 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAAD--EEVAKILY-------RTKKPVVLAVNKLDNTEMRANI----YDFY-SLGFGEPYPISG  146 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHH--HHHHHHHT-------TCCSCEEEEEECCCC-----CC----CSSG-GGSSCCCEECBT
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHH-------HcCCCEEEEEECccCccchhhH----HHHH-HcCCCCeEEEeC
Confidence            99999999999988765443  22322221       2458999999999986542111    1111 3455 7899999


Q ss_pred             cCCCcHHHHHHHHHHHHhc
Q psy8700         156 KTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~~~~  174 (200)
                      ++|.|+.++++++.+.+.+
T Consensus       147 ~~g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          147 THGLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             TTTBTHHHHHHHHHHTGGG
T ss_pred             cCCCChHHHHHHHHHhcCc
Confidence            9999999999999998864

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.86  E-value=2.7e-20  Score=143.09  Aligned_cols=161  Identities=22%  Similarity=0.218  Sum_probs=106.7

Q ss_pred             eE-EEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcccceeEEEEeCCcEEEEEEEeCCCCCC---------ChhhHhhcc
Q psy8700           8 YR-VVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCNKNICTLQITDTTGSHQ---------FPAMQRLSI   76 (200)
Q Consensus         8 ~k-i~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~   76 (200)
                      ++ |+++|++|||||||+|+|.+...... +..++-+.....+.+++  ..+.+|||+|...         +... ...+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHH
Confidence            44 99999999999999999998664221 11222233344555666  4689999999632         1222 2357


Q ss_pred             ccCCEEEEEeeCCChh--HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC-HHHHHHHHHHh---CCcE
Q psy8700          77 SKGHAFILVYSCTSRQ--SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS-AAEGEAEAKMW---GCHF  150 (200)
Q Consensus        77 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~---~~~~  150 (200)
                      ..+|++++|+|++++.  .......+...+....     ..+.|+++|+||+|+.+..... ......+....   +.++
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~-----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~  330 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQSSFEILREIG-----VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV  330 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT-----CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred             HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC-----cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence            7899999999999876  5555555555555543     3568999999999987543110 01111222333   2378


Q ss_pred             EEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         151 METSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      +++||+++.|++++++.|.+.+....
T Consensus       331 ~~~SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          331 IPISALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHHHhcccC
Confidence            99999999999999999998775443

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=7.6e-22  Score=146.78  Aligned_cols=161  Identities=14%  Similarity=0.139  Sum_probs=89.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCC-CCc-------CCCcccce-eEEEEeCCcEEEEEEEeCCCCC-------C
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESY-------IPTIEDTY-RQVISCNKNICTLQITDTTGSH-------Q   67 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~-------~   67 (200)
                      +...++|+++|.+|+|||||+|+|++.... ..+       .++..... ......++..+.+.+|||||..       .
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            345799999999999999999998775532 222       33333222 2333334555799999999973       3


Q ss_pred             ChhhH-------hhcccc-------------CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          68 FPAMQ-------RLSISK-------------GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        68 ~~~~~-------~~~~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      +..+.       ..++..             +|+++++++.+.......-..++..+   .      ...|+++|+||+|
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l---~------~~~pvi~V~nK~D  155 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL---H------EKVNIIPLIAKAD  155 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH---T------TTSCEEEEESSGG
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH---h------ccCCEEEEEeccC
Confidence            34433       333332             67888888766522111112222222   2      1589999999999


Q ss_pred             CCcccccCHH--HHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         128 ETENREVSAA--EGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       128 l~~~~~~~~~--~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      +....+....  .........+++++.+|+.++.|+.+++++|.+.+.
T Consensus       156 ~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          156 TLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence            8755433221  223334456889999999999999999999988763

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.86  E-value=2.3e-23  Score=166.49  Aligned_cols=158  Identities=22%  Similarity=0.228  Sum_probs=110.4

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      +.++|+++|.+++|||||+++|.+..+.....++.+... ...+..+ ....+.||||||++.+..+...++..+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            468899999999999999999987665444444433222 1222221 12368999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH-HHHHHH---HHHh--CCcEEEecccCC
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA-AEGEAE---AKMW--GCHFMETSAKTN  158 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~vSa~~~  158 (200)
                      |+|++++...+.... +..+.        ....|+++++||+|+.+...... ......   ...+  .++++++||++|
T Consensus        82 VVDa~dg~~~qt~e~-l~~~~--------~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG  152 (537)
T 3izy_P           82 VVAADDGVMKQTVES-IQHAK--------DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTG  152 (537)
T ss_dssp             ECBSSSCCCHHHHHH-HHHHH--------TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred             EEECCCCccHHHHHH-HHHHH--------HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence            999998665444332 22222        23479999999999975332111 111111   1111  247999999999


Q ss_pred             CcHHHHHHHHHHHHh
Q psy8700         159 HNVKELFAELLNLEK  173 (200)
Q Consensus       159 ~~i~~~~~~i~~~~~  173 (200)
                      .|++++++.+...+.
T Consensus       153 ~GI~eLle~I~~l~~  167 (537)
T 3izy_P          153 ENMMALAEATIALAE  167 (537)
T ss_dssp             CSSHHHHHHHHHHHT
T ss_pred             CCchhHHHHHHHhhh
Confidence            999999999998764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.86  E-value=6.2e-21  Score=149.37  Aligned_cols=164  Identities=13%  Similarity=0.088  Sum_probs=107.4

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCC---CCCCcCC--CcccceeE-EEEe-------------C--C----cEEEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT---FRESYIP--TIEDTYRQ-VISC-------------N--K----NICTLQ   58 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~~   58 (200)
                      +...++|+++|.+++|||||+++|++..   +.....+  |....+.. ....             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999998532   2222222  22211111 1100             0  1    136899


Q ss_pred             EEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--H
Q psy8700          59 ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS--A  136 (200)
Q Consensus        59 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~  136 (200)
                      +|||||++.+.......+..+|++++|+|++++....+....+..+....       ..|+++++||+|+.+.....  .
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~-------~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-------QKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-------CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-------CCcEEEEEECccCCCHHHHHHHH
Confidence            99999998888877788888999999999996431112222222232222       25899999999997644211  1


Q ss_pred             HHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         137 AEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       137 ~~~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      .+...+...   .+++++++||++|.|++++++.|.+.+..
T Consensus       160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            122222222   35699999999999999999999987653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.86  E-value=1e-20  Score=153.31  Aligned_cols=160  Identities=18%  Similarity=0.192  Sum_probs=110.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC--CC-----CCcCCCc------cccee---EEEEe---CCcEEEEEEEeCCCCC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGT--FR-----ESYIPTI------EDTYR---QVISC---NKNICTLQITDTTGSH   66 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~--~~-----~~~~~~~------~~~~~---~~~~~---~~~~~~~~~~D~~G~~   66 (200)
                      +..+|+++|.+++|||||+++|+...  ..     ..+..+.      +-+..   ..+..   ++..+.+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            46799999999999999999998632  11     1111110      10110   11111   4556899999999999


Q ss_pred             CChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHh
Q psy8700          67 QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMW  146 (200)
Q Consensus        67 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  146 (200)
                      .+.......+..+|++++|+|++++...+....|.....         .+.|+++++||+|+.+..  .......+....
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---------~~ipiIvViNKiDl~~a~--~~~v~~ei~~~l  151 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---------MDLEVVPVLNKIDLPAAD--PERVAEEIEDIV  151 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---------TTCEEEEEEECTTSTTCC--HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---------CCCCEEEeeeccCccccc--HHHHHHHHHHHh
Confidence            999999999999999999999998877777666554332         337999999999997643  122234445555


Q ss_pred             CC---cEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         147 GC---HFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       147 ~~---~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      ++   .++++||++|.|++++++.|.+.+....
T Consensus       152 g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          152 GIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             CCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             CCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence            65   4999999999999999999999886543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.1e-21  Score=138.35  Aligned_cols=124  Identities=15%  Similarity=0.153  Sum_probs=88.9

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhcccc----C
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISK----G   79 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~----~   79 (200)
                      ....++|+++|++|||||||+++|.+..+........+.     ...+.....+.+|||||++.+...+..++..    +
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  119 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL-----SAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV  119 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCc-----eeeeecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence            456789999999999999999999997753311111111     1111134578999999999887777777765    8


Q ss_pred             CEEEEEeeCC-ChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700          80 HAFILVYSCT-SRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE  133 (200)
Q Consensus        80 ~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  133 (200)
                      |++++|+|++ +..++.....|+..+...... ......|+++|+||+|+.+...
T Consensus       120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITES-SCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHH-HSTTCCCEEEEEECTTSTTCCC
T ss_pred             CEEEEEEECCCCchhHHHHHHHHHHHHhhhhh-ccccCCCEEEEEEchHhcCCCC
Confidence            9999999999 899999988888776654310 0024689999999999977554

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.85  E-value=1.8e-20  Score=151.58  Aligned_cols=160  Identities=18%  Similarity=0.253  Sum_probs=112.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCC--CCC-----CcCCC----------cc-cceeEEEEe-CCcEEEEEEEeCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE-----SYIPT----------IE-DTYRQVISC-NKNICTLQITDTTGS   65 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~-----~~~~~----------~~-~~~~~~~~~-~~~~~~~~~~D~~G~   65 (200)
                      .+..+|+++|..++|||||+++|+...  ...     .+..+          .. ......+.. ++..+.+.+|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            456799999999999999999997621  111     11111          00 001111111 455689999999999


Q ss_pred             CCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH
Q psy8700          66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM  145 (200)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  145 (200)
                      .++.......+..+|++++|+|++++...+....|.....         .+.|+++++||+|+.+...  ......+...
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---------~~ipiIvviNKiDl~~a~~--~~v~~el~~~  152 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---------QDLVIIPVINKIDLPSADV--DRVKKQIEEV  152 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---------TTCEEEEEEECTTSTTCCH--HHHHHHHHHT
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---------CCCCEEEEEeccCccccCH--HHHHHHHHHh
Confidence            9999888889999999999999999877777666554332         3479999999999976431  2223344455


Q ss_pred             hCC---cEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         146 WGC---HFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       146 ~~~---~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      .++   +++++||++|.|+.++++.|.+.+...
T Consensus       153 lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          153 LGLDPEEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             SCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             hCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence            565   489999999999999999999988654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.85  E-value=8.2e-21  Score=151.43  Aligned_cols=151  Identities=17%  Similarity=0.155  Sum_probs=95.4

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC--CCCCcC---------------------------CCcccce-eEEEEeCCcEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGT--FRESYI---------------------------PTIEDTY-RQVISCNKNIC   55 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~---------------------------~~~~~~~-~~~~~~~~~~~   55 (200)
                      ..+||+++|.+++|||||+++|+...  +...+.                           ...+.+. .....++....
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            45899999999999999999997641  110000                           0000011 11222344456


Q ss_pred             EEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHH------HHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          56 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEE------LRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        56 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      .+.||||||++++......++..+|++++|+|++++.....      ....+. +....      ...|++||+||+|+.
T Consensus       112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~~------~~~~iIvviNK~Dl~  184 (483)
T 3p26_A          112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL------GIHNLIIAMNKMDNV  184 (483)
T ss_dssp             EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHHT------TCCCEEEEEECGGGG
T ss_pred             eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHHc------CCCcEEEEEECcCcc
Confidence            89999999999999999999999999999999998754322      122222 22212      225799999999997


Q ss_pred             cccccCHHH----HHHHHHHh-----CCcEEEecccCCCcHHH
Q psy8700         130 ENREVSAAE----GEAEAKMW-----GCHFMETSAKTNHNVKE  163 (200)
Q Consensus       130 ~~~~~~~~~----~~~~~~~~-----~~~~~~vSa~~~~~i~~  163 (200)
                      +..+....+    ...+....     +++++++||++|.|+.+
T Consensus       185 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          185 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             cchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            633211111    12222222     35799999999999875

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.85  E-value=1.3e-20  Score=150.02  Aligned_cols=156  Identities=17%  Similarity=0.181  Sum_probs=105.3

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC----C---CCCcCC--CcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhcc
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGT----F---RESYIP--TIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSI   76 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~----~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~   76 (200)
                      ..++|+++|.+++|||||+++|.+..    .   .....+  |....+ ..+..++  ..+.+|||||++.+.......+
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~-~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGF-SAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CC-CEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecce-EEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            35899999999999999999998765    1   111111  111111 1222233  5899999999998888888899


Q ss_pred             ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--HHHHHHHHHHh----CCcE
Q psy8700          77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS--AAEGEAEAKMW----GCHF  150 (200)
Q Consensus        77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~----~~~~  150 (200)
                      ..+|++++|+|++++..-+. ...+..+..        ...|+++++||+|+.+.....  ..+...+....    +.++
T Consensus        95 ~~aD~~ilVvda~~g~~~qt-~e~l~~~~~--------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQT-GEHMLILDH--------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHH-HHHHHHHHH--------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             hhCCEEEEEEecCCCccHHH-HHHHHHHHH--------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            99999999999987322222 222222222        237889999999997643221  12222333333    5689


Q ss_pred             EEecccCCCcHHHHHHHHHHHHh
Q psy8700         151 METSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      +++||++|.|+.++++.|.+.+.
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999999999774

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.85  E-value=4.2e-21  Score=148.34  Aligned_cols=118  Identities=18%  Similarity=0.217  Sum_probs=94.1

Q ss_pred             EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCC----------hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEee
Q psy8700          55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTS----------RQSLEELRPIWEVIRETKGGANELASIPIMLVGN  124 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  124 (200)
                      +.+++|||+|+++++.++..++++++++|+|+|+++          .+++.....|+..+.....    ..+.|++||+|
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~----~~~~piiLvgN  292 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW----LRTISVILFLN  292 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT----CSSCCEEEEEE
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc----CCCCeEEEEEE
Confidence            689999999999999999999999999999999999          8899999999988776432    46789999999


Q ss_pred             CCCCCcccc---cC---------------------------HHHHHHHH-----HH--------hCCcEEEecccCCCcH
Q psy8700         125 KCDETENRE---VS---------------------------AAEGEAEA-----KM--------WGCHFMETSAKTNHNV  161 (200)
Q Consensus       125 K~Dl~~~~~---~~---------------------------~~~~~~~~-----~~--------~~~~~~~vSa~~~~~i  161 (200)
                      |.|+.+.+.   ..                           ..++..++     ..        .++.+++|||+++.||
T Consensus       293 K~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV  372 (402)
T 1azs_C          293 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI  372 (402)
T ss_dssp             CHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHH
T ss_pred             ChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCH
Confidence            999854322   10                           12333332     22        1346789999999999


Q ss_pred             HHHHHHHHHHHhccc
Q psy8700         162 KELFAELLNLEKNRN  176 (200)
Q Consensus       162 ~~~~~~i~~~~~~~~  176 (200)
                      +++|+.+.+.+...+
T Consensus       373 ~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          373 RRVFNDCRDIIQRMH  387 (402)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998876544

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.84  E-value=7.6e-21  Score=152.41  Aligned_cols=116  Identities=16%  Similarity=0.193  Sum_probs=81.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC--------------C---Cc-----CCCcccceeEEEEeCCcEEEEEEEeCC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFR--------------E---SY-----IPTIEDTYRQVISCNKNICTLQITDTT   63 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~--------------~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~   63 (200)
                      +..+|+++|.+|+|||||+++|+...-.              .   .+     .+... .......+....+.+.+||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiT-i~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGIS-VTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCS-SSSSEEEEEETTEEEEEECCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCee-EEEeEEEEEeCCEEEEEEECC
Confidence            4579999999999999999999621100              0   00     00001 011122223335689999999


Q ss_pred             CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700          64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN  131 (200)
Q Consensus        64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  131 (200)
                      |+.++......++..+|++++|+|++++....... +|..+..        ...|+++|+||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~--------~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL--------RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT--------TTCCEEEEEECTTSCCS
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH--------cCCCEEEEEeCCCCccc
Confidence            99999999999999999999999999876666543 4433332        34899999999998643

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.84  E-value=3.1e-20  Score=146.35  Aligned_cols=154  Identities=20%  Similarity=0.138  Sum_probs=99.0

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCC--CCCCc-----------------------------CCCcccceeEEEEeCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRESY-----------------------------IPTIEDTYRQVISCNK   52 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~   52 (200)
                      +...++|+++|.+++|||||+++|+...  .....                             .+... .......+..
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiT-id~~~~~~~~   92 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKT-VEVGRAYFET   92 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCce-EEEeEEEEec
Confidence            3456899999999999999999996532  11000                             00011 0011222333


Q ss_pred             cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHH------HHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeC
Q psy8700          53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSL------EELRPIWEVIRETKGGANELASIP-IMLVGNK  125 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK  125 (200)
                      ....+.||||||+++|.......+..+|++++|+|++++...      .+....+..+..        ...| +++++||
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--------~~v~~iIvviNK  164 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--------AGVKHLIVLINK  164 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--------cCCCeEEEEeec
Confidence            446899999999999999999999999999999999986421      122222222222        2255 8999999


Q ss_pred             CCCCccc------ccCHHHHHHHHHHhC------CcEEEecccCCCcHHHHHH
Q psy8700         126 CDETENR------EVSAAEGEAEAKMWG------CHFMETSAKTNHNVKELFA  166 (200)
Q Consensus       126 ~Dl~~~~------~~~~~~~~~~~~~~~------~~~~~vSa~~~~~i~~~~~  166 (200)
                      +|+....      +....+...+....+      ++++++||++|.|+.++++
T Consensus       165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            9985421      011112222333333      4799999999999999655

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.83  E-value=1.2e-21  Score=150.78  Aligned_cols=161  Identities=19%  Similarity=0.210  Sum_probs=83.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCC-CCCCcC--------CCcccce-eEEEEeCCcEEEEEEEeCCCC-------CC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGT-FRESYI--------PTIEDTY-RQVISCNKNICTLQITDTTGS-------HQ   67 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~D~~G~-------~~   67 (200)
                      +..++|+++|++|+|||||+++|.+.. +...+.        ++..... ......++....+.+|||||+       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            346899999999999999999987643 222222        2221111 112223455578999999998       55


Q ss_pred             ChhhHh-------hccccC-------------CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          68 FPAMQR-------LSISKG-------------HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        68 ~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      +..+..       .++..+             ++++++++.. ..++..+...+  +.. .     ....|+++|+||+|
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~--~~~-l-----~~~~piIlV~NK~D  185 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAF--MKA-I-----HNKVNIVPVIAKAD  185 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHH--HHH-T-----CS-SCEEEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHH--HHH-h-----ccCCCEEEEEECCC
Confidence            655554       455443             3455555431 33444444322  222 2     15589999999999


Q ss_pred             CCcccccCH--HHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         128 ETENREVSA--AEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       128 l~~~~~~~~--~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      +....+...  .....+....++++|++||+++.+ .+.|..+.+.+.+.
T Consensus       186 l~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          186 TLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            987654433  234444555678999999999998 88887777766543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.83  E-value=1.4e-20  Score=145.04  Aligned_cols=147  Identities=11%  Similarity=0.041  Sum_probs=103.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      +|+++|.+++|||||+++|+..      ..|....   ...+......+.+|||||+.++.......+..+|++++|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~------giTi~~~---~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK------GTSSDIT---MYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE------EEESSSE---EEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC------CEEEEee---EEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            8999999999999999999821      1111111   12233334579999999999998888888899999999999 


Q ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCCCCCcE-EEEee-CCCCCcccccCH--HHHHHHHHHh---CCcEEE--ecccC--
Q psy8700          89 TSRQSLEELRPIWEVIRETKGGANELASIPI-MLVGN-KCDETENREVSA--AEGEAEAKMW---GCHFME--TSAKT--  157 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~--vSa~~--  157 (200)
                      ++. ...+...++..+....        .|. ++++| |+|+ +......  .+...+....   .+++++  +||++  
T Consensus        93 ~~g-~~~qt~e~~~~~~~~~--------i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~  162 (370)
T 2elf_A           93 PQG-LDAHTGECIIALDLLG--------FKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKN  162 (370)
T ss_dssp             TTC-CCHHHHHHHHHHHHTT--------CCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSS
T ss_pred             CCC-CcHHHHHHHHHHHHcC--------CCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCc
Confidence            543 3444555555544332        576 88999 9998 4332111  1222222222   358999  99999  


Q ss_pred             -CCcHHHHHHHHHHHHhcc
Q psy8700         158 -NHNVKELFAELLNLEKNR  175 (200)
Q Consensus       158 -~~~i~~~~~~i~~~~~~~  175 (200)
                       +.|++++++.|.+.+...
T Consensus       163 ~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          163 PFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             TTTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhhcccc
Confidence             999999999999887543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.83  E-value=3.6e-20  Score=144.82  Aligned_cols=161  Identities=16%  Similarity=0.128  Sum_probs=109.0

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhC--------CCCCC-cCC------Ccccce-eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKG--------TFRES-YIP------TIEDTY-RQVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~--------~~~~~-~~~------~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      +...++|+++|.+++|||||+++|++.        .+... ...      ..+.+. .....++.....+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            456799999999999999999999873        11000 000      001111 12233344456899999999999


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccC---HHHHHHHH
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVS---AAEGEAEA  143 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~  143 (200)
                      +.......+..+|++++|+|++++... +...++..+...        ..| +++++||+|+.+..+..   ..+...+.
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~--------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l  158 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL  158 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT--------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc--------CCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence            988888899999999999999886543 335555544432        267 88999999997522111   11233344


Q ss_pred             HHhC-----CcEEEecccCCCc------------------HHHHHHHHHHHHh
Q psy8700         144 KMWG-----CHFMETSAKTNHN------------------VKELFAELLNLEK  173 (200)
Q Consensus       144 ~~~~-----~~~~~vSa~~~~~------------------i~~~~~~i~~~~~  173 (200)
                      ...+     .+++++||++|.|                  +.++++.+.+.+.
T Consensus       159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            4444     6899999999987                  7788888877664

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.83  E-value=1.2e-19  Score=147.19  Aligned_cols=156  Identities=22%  Similarity=0.250  Sum_probs=104.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCC----cCCCcccceeEEE-------------EeCCcEEEEEEEeCCCCCCC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRES----YIPTIEDTYRQVI-------------SCNKNICTLQITDTTGSHQF   68 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~~~D~~G~~~~   68 (200)
                      +.++|+++|.+++|||||+++|.+..+...    ..++.+..+....             ..+.....+.||||||++.+
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            468999999999999999999987544221    1112211111000             00011125999999999999


Q ss_pred             hhhHhhccccCCEEEEEeeCCC---hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC----------
Q psy8700          69 PAMQRLSISKGHAFILVYSCTS---RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS----------  135 (200)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----------  135 (200)
                      ..+....+..+|++++|+|+++   +.++..+.    .+..        ...|+++++||+|+.......          
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~--------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa  151 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--------YRTPFVVAANKIDRIHGWRVHEGRPFMETFS  151 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH--------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH--------cCCeEEEEecccccccccccccCCchHHHHH
Confidence            9988888999999999999998   54444332    2222        347999999999996422100          


Q ss_pred             ---HH----------HHHHHHHHhC---------------CcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         136 ---AA----------EGEAEAKMWG---------------CHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       136 ---~~----------~~~~~~~~~~---------------~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                         ..          +........+               .+++++||++|.|+.+++++|...+.
T Consensus       152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence               00          0001111111               27999999999999999999998775

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.82  E-value=3.6e-21  Score=152.55  Aligned_cols=152  Identities=18%  Similarity=0.153  Sum_probs=97.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce--eEEEEeCCcEEEEEEEeCCC--------CCCChhhHhhcc
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY--RQVISCNKNICTLQITDTTG--------SHQFPAMQRLSI   76 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~G--------~~~~~~~~~~~~   76 (200)
                      ..+|+++|.+|||||||+|+|.+.....  ....++..  ............+.+|||||        ++.+..+...++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~--v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISI--VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcc--cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            5799999999999999999999865421  11112222  12233333445899999999        344556777888


Q ss_pred             ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC-cEEEecc
Q psy8700          77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC-HFMETSA  155 (200)
Q Consensus        77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa  155 (200)
                      ..+|++++|+|..++.....  .++..+..       ....|+++|+||+|+.+....    ...+ ...+. .++++||
T Consensus       101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~-------~~~~pvilV~NK~D~~~~~~~----~~e~-~~lg~~~~~~iSA  166 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTAAD--EEVAKILY-------RTKKPVVLAVNKLDNTEMRAN----IYDF-YSLGFGEPYPISG  166 (456)
T ss_dssp             HHCSEEEEEEESSSCSCHHH--HHHHHHHT-------TCCSCEEEEEECC-------------CCS-GGGSSSSEEECCT
T ss_pred             hhCCEEEEEEeCCCCCChHH--HHHHHHHH-------HcCCCEEEEEECccchhhhhh----HHHH-HHcCCCceEEeec
Confidence            99999999999876443322  23322221       245899999999998643210    1111 12343 6789999


Q ss_pred             cCCCcHHHHHHHHHHHHhc
Q psy8700         156 KTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~~~~  174 (200)
                      ++|.|+.++++.+.+.+..
T Consensus       167 ~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          167 THGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             TTCTTHHHHHHHHHTTGGG
T ss_pred             ccccchHHHHHHHHhhccc
Confidence            9999999999999887643

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.82  E-value=2.2e-21  Score=152.90  Aligned_cols=151  Identities=21%  Similarity=0.191  Sum_probs=100.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhC--CCCCCc-------------------------------CCCcccceeEEEEeC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKG--TFRESY-------------------------------IPTIEDTYRQVISCN   51 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~--~~~~~~-------------------------------~~~~~~~~~~~~~~~   51 (200)
                      ...++|+++|.+++|||||+++|+..  .+....                               ..+...   ....++
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~---~~~~~~   80 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINL---TFMRFE   80 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC--------------CEEE
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEe---eEEEEe
Confidence            35689999999999999999999864  222110                               001110   111233


Q ss_pred             CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHH-------HHHHHHHHHhCCCCCCCCCcEEEEee
Q psy8700          52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELR-------PIWEVIRETKGGANELASIPIMLVGN  124 (200)
Q Consensus        52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~ivv~n  124 (200)
                      .....+.+|||||+.+|......++..+|++++|+|+++ .+++...       ..+..+.. .      .-.|+++++|
T Consensus        81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~-~------~~~~iivviN  152 (435)
T 1jny_A           81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT-M------GLDQLIVAVN  152 (435)
T ss_dssp             CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH-T------TCTTCEEEEE
T ss_pred             cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH-c------CCCeEEEEEE
Confidence            445689999999999999999999999999999999998 4555332       22222222 1      2246899999


Q ss_pred             CCCCCccc--c----cCHHHHHHHHHHhC-----CcEEEecccCCCcHHHHHH
Q psy8700         125 KCDETENR--E----VSAAEGEAEAKMWG-----CHFMETSAKTNHNVKELFA  166 (200)
Q Consensus       125 K~Dl~~~~--~----~~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~~~~  166 (200)
                      |+|+.+..  +    ....+...+....+     ++++++||++|.|+.++++
T Consensus       153 K~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          153 KMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            99997621  1    11223344444444     5799999999999975543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.82  E-value=6.9e-20  Score=144.34  Aligned_cols=152  Identities=20%  Similarity=0.109  Sum_probs=100.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCC--CCCC----------cCCCccc-------------------ce-eEEEEeCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRES----------YIPTIED-------------------TY-RQVISCNK   52 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~----------~~~~~~~-------------------~~-~~~~~~~~   52 (200)
                      ...++|+++|.+++|||||+++|++..  +...          ..++...                   +. .....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            345899999999999999999998643  1110          0111100                   00 01112333


Q ss_pred             cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700          53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR  132 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  132 (200)
                      ....+.+|||||++.|......++..+|++++|+|++++...+ ...++..+.. .      ...|+++|+||+|+.+..
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~-~------~~~~iIvviNK~Dl~~~~  173 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASL-L------GIKHIVVAINKMDLNGFD  173 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHH-T------TCCEEEEEEECTTTTTSC
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH-c------CCCeEEEEEEcCcCCccc
Confidence            4568999999999999888888999999999999999865333 2334433332 2      123699999999997632


Q ss_pred             c--c--CHHHHHHHHHHhC-----CcEEEecccCCCcHHHH
Q psy8700         133 E--V--SAAEGEAEAKMWG-----CHFMETSAKTNHNVKEL  164 (200)
Q Consensus       133 ~--~--~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~~  164 (200)
                      +  .  ...+...+....+     ++++++||++|.|+.++
T Consensus       174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            1  1  1122334445556     58999999999999874

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.82  E-value=3.8e-20  Score=144.28  Aligned_cols=160  Identities=16%  Similarity=0.131  Sum_probs=106.8

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCC---Cc-----CC------Ccccce-eEEEEeCCcEEEEEEEeCCCCCCChh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRE---SY-----IP------TIEDTY-RQVISCNKNICTLQITDTTGSHQFPA   70 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~---~~-----~~------~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~   70 (200)
                      +.++|+++|.+++|||||+++|++.....   ..     ..      ..+.+. .....++.....+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            36899999999999999999998731100   00     00      000011 11223334446899999999998888


Q ss_pred             hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCccccc---CHHHHHHHHHHh
Q psy8700          71 MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREV---SAAEGEAEAKMW  146 (200)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~  146 (200)
                      .....+..+|++++|+|+++....+. ...+..+..        ...| +++++||+|+.+..+.   ...+...+....
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~--------~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~  152 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ--------IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEF  152 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH--------TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH--------cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHc
Confidence            88889999999999999998654333 333333332        2367 6899999999752211   112333444444


Q ss_pred             C-----CcEEEecccCCCc----------HHHHHHHHHHHHhc
Q psy8700         147 G-----CHFMETSAKTNHN----------VKELFAELLNLEKN  174 (200)
Q Consensus       147 ~-----~~~~~vSa~~~~~----------i~~~~~~i~~~~~~  174 (200)
                      +     ++++++||++|.|          +.++++.|.+.+..
T Consensus       153 ~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             CCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence            4     5899999999764          88999999887653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.82  E-value=6.9e-21  Score=143.22  Aligned_cols=159  Identities=19%  Similarity=0.145  Sum_probs=99.0

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCc------CCCcc----------------c---cee-------------
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESY------IPTIE----------------D---TYR-------------   45 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~------~~~~~----------------~---~~~-------------   45 (200)
                      ....++|+++|.+|||||||+|+|++..+.+..      .|+..                +   +..             
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            346789999999999999999999987753211      12100                0   000             


Q ss_pred             ------------EEEEeC-CcEEEEEEEeCCCCCC-------------ChhhHhhccccCCEEE-EEeeCCChhHHHHHH
Q psy8700          46 ------------QVISCN-KNICTLQITDTTGSHQ-------------FPAMQRLSISKGHAFI-LVYSCTSRQSLEELR   98 (200)
Q Consensus        46 ------------~~~~~~-~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~   98 (200)
                                  ..+... .....+.+|||||...             +..+...++..++.++ +|+|+++........
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                        000000 0125799999999642             3456667888888776 799988754433322


Q ss_pred             HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH--hC-CcEEEecccCCCcHHHHHHHHHH
Q psy8700          99 PIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM--WG-CHFMETSAKTNHNVKELFAELLN  170 (200)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~vSa~~~~~i~~~~~~i~~  170 (200)
                      .++..+   .     ....|+++|+||+|+.+...............  .+ .+++++||++|.|+.++++.+.+
T Consensus       183 ~~~~~~---~-----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          183 KIAKEV---D-----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             HHHHHH---C-----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             HHHHHh---C-----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            222222   2     24589999999999976543221111100001  12 36788999999999999999877

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.82  E-value=9.4e-20  Score=148.50  Aligned_cols=156  Identities=15%  Similarity=0.126  Sum_probs=98.8

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCc-------------------------------CCCcccceeEEEEeCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESY-------------------------------IPTIEDTYRQVISCNK   52 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~   52 (200)
                      ....++|+++|.+++|||||+++|++....-..                               .+..... .....+..
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid-~~~~~~~~  242 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVS-ICTSHFST  242 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCS-CSCCEEEC
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEe-eeeEEEec
Confidence            345799999999999999999999865321000                               0011100 01112233


Q ss_pred             cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHH---HHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSL---EELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      ....+.||||||+..+......++..+|++++|+|++++...   .....+...+.....    ....|++||+||+|+.
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~----lgi~~iIVVvNKiDl~  318 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS----LGIHNLIIAMNKMDNV  318 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT----TTCCEEEEEEECTTTT
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH----cCCCeEEEEEeccccc
Confidence            445899999999999999999999999999999999875311   001112222222221    1224699999999997


Q ss_pred             cccccC----HHHHHHHHHHh-----CCcEEEecccCCCcHHHH
Q psy8700         130 ENREVS----AAEGEAEAKMW-----GCHFMETSAKTNHNVKEL  164 (200)
Q Consensus       130 ~~~~~~----~~~~~~~~~~~-----~~~~~~vSa~~~~~i~~~  164 (200)
                      +..+..    ......+....     +++++++||++|.|+.++
T Consensus       319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            632211    11122222333     358999999999999876

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.81  E-value=2.1e-21  Score=154.00  Aligned_cols=156  Identities=19%  Similarity=0.265  Sum_probs=104.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ++..+|+++|.+++|||||+++|....+.....+...... ...+..++  ..+.||||||++.|...+...+..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            4578999999999999999999987554333222221111 11122233  36899999999999998888999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc--ccCHHH--HHHHHHHhC--CcEEEecccC
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR--EVSAAE--GEAEAKMWG--CHFMETSAKT  157 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~--~~~~~~~~~--~~~~~vSa~~  157 (200)
                      +|+|++++...+.. ..+..+..        ...|+++++||+|+.+..  ......  ...+...++  ++++++||++
T Consensus        80 LVVda~~g~~~qT~-e~l~~~~~--------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAkt  150 (501)
T 1zo1_I           80 LVVAADDGVMPQTI-EAIQHAKA--------AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKA  150 (501)
T ss_dssp             EEEETTTBSCTTTH-HHHHHHHH--------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTT
T ss_pred             EEeecccCccHHHH-HHHHHHHh--------cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeee
Confidence            99999884332222 22222222        347999999999997532  111100  000111222  6899999999


Q ss_pred             CCcHHHHHHHHHHH
Q psy8700         158 NHNVKELFAELLNL  171 (200)
Q Consensus       158 ~~~i~~~~~~i~~~  171 (200)
                      |.|+.++|+++...
T Consensus       151 G~gI~eLle~I~~~  164 (501)
T 1zo1_I          151 GTGIDELLDAILLQ  164 (501)
T ss_dssp             CTTCTTHHHHTTTT
T ss_pred             ccCcchhhhhhhhh
Confidence            99999999998753

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.81  E-value=4.1e-20  Score=146.33  Aligned_cols=153  Identities=18%  Similarity=0.163  Sum_probs=100.7

Q ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhC--CCCCC-------------------------------cCCCcccceeEE
Q psy8700           1 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKG--TFRES-------------------------------YIPTIEDTYRQV   47 (200)
Q Consensus         1 ~~~~~~~~ki~~~G~~~~GKSsli~~l~~~--~~~~~-------------------------------~~~~~~~~~~~~   47 (200)
                      |..+...++|+++|.+++|||||+++|++.  .+...                               ...+....   .
T Consensus         1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~---~   77 (458)
T 1f60_A            1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIA---L   77 (458)
T ss_dssp             -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCS---C
T ss_pred             CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEE---E
Confidence            455566799999999999999999999864  11110                               00111111   1


Q ss_pred             EEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhH---HH---HHHHHHHHHHHHhCCCCCCCCCc-EE
Q psy8700          48 ISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQS---LE---ELRPIWEVIRETKGGANELASIP-IM  120 (200)
Q Consensus        48 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~p-~i  120 (200)
                      ..++.....+.+|||||+..|.......+..+|++++|+|++++..   |.   +....+..+.. .       ..| ++
T Consensus        78 ~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~-------~v~~ii  149 (458)
T 1f60_A           78 WKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-L-------GVRQLI  149 (458)
T ss_dssp             EEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-T-------TCCEEE
T ss_pred             EEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-c-------CCCeEE
Confidence            1233445689999999999999999999999999999999987632   21   22223322222 2       244 89


Q ss_pred             EEeeCCCCCcccc--c--CHHHHHHHHHHhC-----CcEEEecccCCCcHHHH
Q psy8700         121 LVGNKCDETENRE--V--SAAEGEAEAKMWG-----CHFMETSAKTNHNVKEL  164 (200)
Q Consensus       121 vv~nK~Dl~~~~~--~--~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~~  164 (200)
                      +++||+|+.+..+  .  ...+...+....+     ++++++||++|.|+.++
T Consensus       150 vviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          150 VAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             EEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             EEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            9999999974211  1  1122333334444     68999999999998744

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.81  E-value=3e-19  Score=147.66  Aligned_cols=167  Identities=15%  Similarity=0.209  Sum_probs=109.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccce--------eEEEEe-CCc----------------------
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTY--------RQVISC-NKN----------------------   53 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--------~~~~~~-~~~----------------------   53 (200)
                      ..++|+|+|.+|+|||||+|+|++....+ ...|++....        ..+... ++.                      
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            57899999999999999999999876422 2233331100        001111 000                      


Q ss_pred             -----------------------E--EEEEEEeCCCCCC---ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHH
Q psy8700          54 -----------------------I--CTLQITDTTGSHQ---FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIR  105 (200)
Q Consensus        54 -----------------------~--~~~~~~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~  105 (200)
                                             .  ..+.+|||||...   .......++..+|++++|+|++++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                                   0  2589999999543   45667778899999999999998877666554433322


Q ss_pred             HHhCCCCCCCCCcEEEEeeCCCCCcccccCHH---H-------HH-----HHHHH--------hCCcEEEeccc------
Q psy8700         106 ETKGGANELASIPIMLVGNKCDETENREVSAA---E-------GE-----AEAKM--------WGCHFMETSAK------  156 (200)
Q Consensus       106 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~-------~~-----~~~~~--------~~~~~~~vSa~------  156 (200)
                              ....|+++|+||+|+.........   .       ..     .+...        ...+++++||+      
T Consensus       228 --------~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~  299 (695)
T 2j69_A          228 --------GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR  299 (695)
T ss_dssp             --------TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred             --------hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence                    124689999999998754311110   0       10     01111        12479999999      


Q ss_pred             --------CCCcHHHHHHHHHHHHhccchhHH
Q psy8700         157 --------TNHNVKELFAELLNLEKNRNISLQ  180 (200)
Q Consensus       157 --------~~~~i~~~~~~i~~~~~~~~~~~~  180 (200)
                              ++.|+.++++.+.+.+........
T Consensus       300 ~~~~~~~~~~~Gi~~L~~~L~~~l~~~~~~~~  331 (695)
T 2j69_A          300 LKNPQADLDGTGFPKFMDSLNTFLTRERAIAE  331 (695)
T ss_dssp             HHCTTCCCTTSSHHHHHHHHHHHHHHTHHHHH
T ss_pred             ccCchhhhhccCHHHHHHHHHHHHHHhHHHHH
Confidence                    999999999999998865544333

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.80  E-value=3.4e-19  Score=127.28  Aligned_cols=158  Identities=11%  Similarity=0.074  Sum_probs=96.5

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCC----------ChhhHh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ----------FPAMQR   73 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~   73 (200)
                      ....+|+++|++|||||||++++.+..+...+.++.+.+.. .....++   .+.+|||||...          +.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            35689999999999999999999886643333344333221 2222333   478999999743          122233


Q ss_pred             hcc---ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC--HHHHHHHHHHhC-
Q psy8700          74 LSI---SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS--AAEGEAEAKMWG-  147 (200)
Q Consensus        74 ~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~-  147 (200)
                      .++   ..++++++++|++++.+.... .....+..        ...|+++++||+|+.+..+..  ......+....+ 
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~--------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~  171 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD--------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG  171 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH--------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH--------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence            344   467999999999876543321 12222222        337899999999987643211  122333334443 


Q ss_pred             -CcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         148 -CHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       148 -~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                       +.++++|++++.|+.++++.|.+.+.+
T Consensus       172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          172 DVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence             478899999999999999999887643

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.79  E-value=2.3e-18  Score=134.10  Aligned_cols=163  Identities=18%  Similarity=0.178  Sum_probs=108.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC----hhhH---hhccccC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF----PAMQ---RLSISKG   79 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~~---~~~~~~~   79 (200)
                      ..|+++|++|||||||++++++.... ..+..++.......+..++ ...+.+||+||....    ..+.   ......+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            35899999999999999999876421 1111111111222333333 246899999997432    1111   2234579


Q ss_pred             CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC
Q psy8700          80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH  159 (200)
Q Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  159 (200)
                      +.+++++|++ ...+.++..++..+.....   .....|.++++||+|+... . ............+.+++.+||+++.
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~---aL~~~P~ILVlNKlDl~~~-~-~~~~l~~~l~~~g~~vi~iSA~~g~  310 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDP---ALLRRPSLVALNKVDLLEE-E-AVKALADALAREGLAVLPVSALTGA  310 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCH---HHHHSCEEEEEECCTTSCH-H-HHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhH---HhhcCCEEEEEECCChhhH-H-HHHHHHHHHHhcCCeEEEEECCCcc
Confidence            9999999998 5567777777766665431   1124799999999998764 2 1122233334457799999999999


Q ss_pred             cHHHHHHHHHHHHhccch
Q psy8700         160 NVKELFAELLNLEKNRNI  177 (200)
Q Consensus       160 ~i~~~~~~i~~~~~~~~~  177 (200)
                      |+++++++|.+.+.+...
T Consensus       311 gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          311 GLPALKEALHALVRSTPP  328 (416)
T ss_dssp             THHHHHHHHHHHHHTSCC
T ss_pred             CHHHHHHHHHHHHHhccc
Confidence            999999999999876543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.79  E-value=1.7e-18  Score=127.95  Aligned_cols=122  Identities=20%  Similarity=0.153  Sum_probs=81.8

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccc-----
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSIS-----   77 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~-----   77 (200)
                      ...++|+++|.+|+|||||+|+|++...  ...+.++...........++  ..+.+|||||+..+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            4679999999999999999999998764  22233333333333444444  48999999998766443333332     


Q ss_pred             ----cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700          78 ----KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN  131 (200)
Q Consensus        78 ----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  131 (200)
                          .+|++++|++++..........++..+....+   .....|+++|+||+|+...
T Consensus       112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~---~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFG---KEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHC---GGGGGGEEEEEECTTCCCS
T ss_pred             HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhc---hhhhcCEEEEEeCcccCCC
Confidence                68999999998765422223466666666653   1112499999999998644

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.78  E-value=7.6e-19  Score=149.19  Aligned_cols=162  Identities=17%  Similarity=0.162  Sum_probs=108.6

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCC------CCc--C------CCcccce-eEEEEeCCcEEEEEEEeCCCCCCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR------ESY--I------PTIEDTY-RQVISCNKNICTLQITDTTGSHQF   68 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~------~~~--~------~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~   68 (200)
                      +...++|+++|.+++|||||+++|++....      ..+  .      .+.+.+. .....++.....+.+|||||++++
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            445699999999999999999999863100      000  0      0111111 011233444568999999999999


Q ss_pred             hhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCccccc---CHHHHHHHHH
Q psy8700          69 PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREV---SAAEGEAEAK  144 (200)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~  144 (200)
                      .......+..+|++|+|+|++++...+ ...++..+....        .| ++|++||+|+.+..+.   ...+...+..
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~lg--------IP~IIVVINKiDLv~d~e~le~i~eEi~elLk  443 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQVG--------VPYIIVFLNKCDMVDDEELLELVEMEVRELLS  443 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHHT--------CSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHcC--------CCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence            888888999999999999999864333 344444444322        67 7899999999753221   1123334444


Q ss_pred             HhC-----CcEEEecccCC--------CcHHHHHHHHHHHHhc
Q psy8700         145 MWG-----CHFMETSAKTN--------HNVKELFAELLNLEKN  174 (200)
Q Consensus       145 ~~~-----~~~~~vSa~~~--------~~i~~~~~~i~~~~~~  174 (200)
                      ..+     ++++++||++|        .|+.++++.|.+.+..
T Consensus       444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~  486 (1289)
T 3avx_A          444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE  486 (1289)
T ss_dssp             HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred             hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence            444     58999999999        4689999999886643

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.78  E-value=8e-20  Score=145.02  Aligned_cols=153  Identities=20%  Similarity=0.147  Sum_probs=86.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhC--CCCCC-------------------------------cCCCcccceeEEEEeC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKG--TFRES-------------------------------YIPTIEDTYRQVISCN   51 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~--~~~~~-------------------------------~~~~~~~~~~~~~~~~   51 (200)
                      ...++|+++|.+++|||||+++|+..  .+...                               ...|....+ ..  +.
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~-~~--~~  117 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR-AY--FE  117 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C-CE--EE
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee-EE--Ee
Confidence            34589999999999999999999752  11100                               000111000 11  22


Q ss_pred             CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChh---HHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCC
Q psy8700          52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQ---SLEELRPIWEVIRETKGGANELASIP-IMLVGNKCD  127 (200)
Q Consensus        52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D  127 (200)
                      .....+.||||||++.|.......+..+|++++|+|++++.   +|.....+...+....     ....| ++|++||+|
T Consensus       118 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-----~~~vp~iivviNK~D  192 (467)
T 1r5b_A          118 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-----TQGINHLVVVINKMD  192 (467)
T ss_dssp             CSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-----HTTCSSEEEEEECTT
T ss_pred             cCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-----HcCCCEEEEEEECcc
Confidence            22458999999999999988888999999999999999863   2221111222222111     12356 999999999


Q ss_pred             CCccc---c---cCHHHHHHHHHHh-------CCcEEEecccCCCcHHHHH
Q psy8700         128 ETENR---E---VSAAEGEAEAKMW-------GCHFMETSAKTNHNVKELF  165 (200)
Q Consensus       128 l~~~~---~---~~~~~~~~~~~~~-------~~~~~~vSa~~~~~i~~~~  165 (200)
                      +.+..   +   ....+...+....       +++++++||++|.|+.+++
T Consensus       193 l~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          193 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            96421   1   1111233334443       3569999999999998755

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.78  E-value=3.3e-19  Score=137.43  Aligned_cols=155  Identities=17%  Similarity=0.164  Sum_probs=99.9

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-c--------------ceeE------------------------
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-D--------------TYRQ------------------------   46 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~--------------~~~~------------------------   46 (200)
                      ...+|+|+|++|||||||+|+|++..+.+....... .              .+..                        
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            445999999999999999999999765222211110 0              0000                        


Q ss_pred             --------------EEEe-CCcEEEEEEEeCCCCCCC-------------hhhHhhccccCCEEEEEeeCCChhHHHHHH
Q psy8700          47 --------------VISC-NKNICTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSCTSRQSLEELR   98 (200)
Q Consensus        47 --------------~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~   98 (200)
                                    ...+ ......+.+|||||...+             ..+...++.+++++++|++..+.+...  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                          0000 111236899999998775             677888999999999999875433221  2


Q ss_pred             HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy8700          99 PIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE  167 (200)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~  167 (200)
                      .++..+....     ....|+++|+||+|+.+................+.+|+.+++..+.++.+.+..
T Consensus       191 ~~~~l~~~~~-----~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          191 DAIKISREVD-----PSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHHHSC-----TTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHHHhc-----ccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            3333343333     345799999999999865543332222233345678999999999888766544

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.78  E-value=9.9e-19  Score=132.40  Aligned_cols=113  Identities=14%  Similarity=0.099  Sum_probs=69.5

Q ss_pred             EEEEEEeCCCCCC-------------ChhhHhhccccCCEEEEEeeCCChhHH-HHHHHHHHHHHHHhCCCCCCCCCcEE
Q psy8700          55 CTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVYSCTSRQSL-EELRPIWEVIRETKGGANELASIPIM  120 (200)
Q Consensus        55 ~~~~~~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~i  120 (200)
                      ..+.+|||||...             +......++..+|++++|+|..+.... .....++   ....     ....|++
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~---~~~~-----~~~~~~i  202 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLA---KEVD-----PEGKRTI  202 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHH---HHHC-----SSCSSEE
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHH---HHhC-----CCCCcEE
Confidence            4799999999754             345666788899999999997433211 1111222   2222     2458999


Q ss_pred             EEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec---ccC---CCcHHHHHHHHHHHHhcc
Q psy8700         121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETS---AKT---NHNVKELFAELLNLEKNR  175 (200)
Q Consensus       121 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS---a~~---~~~i~~~~~~i~~~~~~~  175 (200)
                      +|+||+|+.+................+..++++|   +.+   +.|+.++++.+.+.+...
T Consensus       203 ~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          203 GVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             EEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred             EEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence            9999999976543211111100011124566665   444   788999999998888654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.77  E-value=7.1e-18  Score=138.94  Aligned_cols=116  Identities=18%  Similarity=0.192  Sum_probs=81.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCc----------------c-cceeEEEEeCCcEEEEEEEeCCCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI----------------E-DTYRQVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      ....+|+++|+.|+|||||+++|++.........+.                . ........+....+.+.+|||||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            346789999999999999999998532210000000                0 11112223333457899999999999


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      +......++..+|++++|+|.++...... ..++..+..        ...|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~--------~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER--------LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH--------TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH--------ccCCEEEEecCCchh
Confidence            99999999999999999999887654333 344544443        237999999999986

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.76  E-value=5.6e-18  Score=125.62  Aligned_cols=122  Identities=16%  Similarity=0.139  Sum_probs=78.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhH-------hhc
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQ-------RLS   75 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~~~   75 (200)
                      ...++|+++|.+|+|||||+|+|++..+.  ..+.++........  .+.....+.+|||||+..+....       ..+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVS--RSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEE--EEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEE--EeeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            35799999999999999999999987642  12222222222222  23344689999999986543211       111


Q ss_pred             --cccCCEEEEEeeCCChhHHHH-HHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700          76 --ISKGHAFILVYSCTSRQSLEE-LRPIWEVIRETKGGANELASIPIMLVGNKCDETENR  132 (200)
Q Consensus        76 --~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  132 (200)
                        ...+|++++|+|++... +.. ...|+..+....+   .....|+++|+||+|+....
T Consensus       115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~---~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFG---KGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHC---GGGGGGEEEEEECCSCCCGG
T ss_pred             hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhC---cccccCEEEEEECcccCCcC
Confidence              34689999999886532 332 2356666665542   01125999999999997554

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.76  E-value=5.6e-19  Score=132.74  Aligned_cols=162  Identities=19%  Similarity=0.198  Sum_probs=85.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhC-CCCCCcC--------CCcccc-eeEEEEeCCcEEEEEEEeCCCC-------CC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKG-TFRESYI--------PTIEDT-YRQVISCNKNICTLQITDTTGS-------HQ   67 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~-~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~D~~G~-------~~   67 (200)
                      +-.++|+++|++|||||||+++|.+. .+.....        ++.... ........+....+.+||++|+       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            44689999999999999999998875 3322221        111111 1111222344578999999997       55


Q ss_pred             ChhhHh-------hcccc-------------CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          68 FPAMQR-------LSISK-------------GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        68 ~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      +..+..       .++..             +++++++.+.+.. +++....  ..+....      ...|+++|+||.|
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~l~~l~------~~~~iilV~~K~D  166 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFMKAIH------NKVNIVPVIAKAD  166 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HHHHHHT------TTSCEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HHHHHHH------hcCCEEEEEEeCC
Confidence            555544       34333             2345555543221 2222221  2233332      3479999999999


Q ss_pred             CCcccccC--HHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         128 ETENREVS--AAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       128 l~~~~~~~--~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      +....+..  ..+...++...++++|++||+++ |++++|..+.+.+.+..
T Consensus       167 l~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          167 TLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            97654432  23456667778899999999999 99999999998886543

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.76  E-value=2e-17  Score=132.80  Aligned_cols=116  Identities=16%  Similarity=0.196  Sum_probs=78.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCc----------CCCc----------ccce-eEEEEeCCcEEEEEEEeCCC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESY----------IPTI----------EDTY-RQVISCNKNICTLQITDTTG   64 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~----------~~~~----------~~~~-~~~~~~~~~~~~~~~~D~~G   64 (200)
                      ...+|+++|.+|+|||||+++|+...-....          ..+.          +.+. .....+....+.+.+|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            4689999999999999999999863210000          0000          0000 11122233446899999999


Q ss_pred             CCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          65 SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      +..+......++..+|++++|+|++++..... ..++..+.        ....|+++++||+|+..
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~--------~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR--------LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT--------TTTCCEEEEEECTTSCC
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH--------HcCCCEEEEEcCcCCcc
Confidence            99999888899999999999999988643222 23332222        24589999999999864

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.75  E-value=2e-17  Score=136.73  Aligned_cols=115  Identities=18%  Similarity=0.150  Sum_probs=81.5

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCC--CCC------------------CcCCCcccceeEEEEeCCcEEEEEEEeCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE------------------SYIPTIEDTYRQVISCNKNICTLQITDTT   63 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   63 (200)
                      .....+|+++|.+|+|||||+++|+...  +..                  ....+...   ....+....+.+.+||||
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~---~~~~~~~~~~~i~liDTP   85 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA---AVTTCFWKDHRINIIDTP   85 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------C---CEEEEEETTEEEEEECCC
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhccccccc---ceEEEEECCeEEEEEECc
Confidence            3557899999999999999999998421  100                  00111111   111122234689999999


Q ss_pred             CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      |+..+......++..+|++++|+|+++.........|. .+..        .+.|+++++||+|+..
T Consensus        86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~--------~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK--------YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH--------TTCCEEEEEECTTSTT
T ss_pred             CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH--------cCCCEEEEEECCCccc
Confidence            99999999999999999999999999887766654443 3333        2489999999999864

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.74  E-value=7e-18  Score=131.03  Aligned_cols=84  Identities=19%  Similarity=0.166  Sum_probs=46.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEE--E-------------------EeCC-cEEEEEEEeCCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQV--I-------------------SCNK-NICTLQITDTTG   64 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~~~D~~G   64 (200)
                      ++|+++|.||||||||+|+|++..... .+..++.......  +                   ..++ ..+.+++|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            589999999999999999999866321 2211111111111  1                   0122 246899999999


Q ss_pred             CCC----ChhhHh---hccccCCEEEEEeeCCCh
Q psy8700          65 SHQ----FPAMQR---LSISKGHAFILVYSCTSR   91 (200)
Q Consensus        65 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~   91 (200)
                      +..    ...+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    233333   346789999999999875

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.74  E-value=1.9e-19  Score=146.30  Aligned_cols=161  Identities=21%  Similarity=0.181  Sum_probs=86.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCC--CCCCc---------------------CCC-----cccce--eEEEEeCCc
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRESY---------------------IPT-----IEDTY--RQVISCNKN   53 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~---------------------~~~-----~~~~~--~~~~~~~~~   53 (200)
                      ....++|+++|.+++|||||+++|+...  .....                     ...     ..+.+  .....+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            3456899999999999999999996421  00000                     000     00001  011122233


Q ss_pred             EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChh---HH---HHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCC
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQ---SL---EELRPIWEVIRETKGGANELASIP-IMLVGNKC  126 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~  126 (200)
                      ...+.||||||+..+.......+..+|++++|+|++++.   .+   ......+..+.. .       ..| ++||+||+
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-l-------gip~iIvviNKi  325 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-L-------GISEIVVSVNKL  325 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-S-------SCCCEEEEEECG
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-c-------CCCeEEEEEecc
Confidence            468899999999998888888889999999999998642   11   111222222222 2       244 89999999


Q ss_pred             CCCcccc-cCH---HHHHHHH-HHhCC-----cEEEecccCCCcHH--------------HHHHHHHHHH
Q psy8700         127 DETENRE-VSA---AEGEAEA-KMWGC-----HFMETSAKTNHNVK--------------ELFAELLNLE  172 (200)
Q Consensus       127 Dl~~~~~-~~~---~~~~~~~-~~~~~-----~~~~vSa~~~~~i~--------------~~~~~i~~~~  172 (200)
                      |+.+..+ ...   .+...+. ...++     +++++||++|.|+.              .+++.|.+..
T Consensus       326 Dl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            9875221 111   1112222 22343     69999999999998              6777776644

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.74  E-value=1.6e-18  Score=130.41  Aligned_cols=133  Identities=17%  Similarity=0.197  Sum_probs=105.9

Q ss_pred             HHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChh-HHHHHHH
Q psy8700          22 SLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQ-SLEELRP   99 (200)
Q Consensus        22 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~   99 (200)
                      +++.+++.+.+. ..+.||.++.+......++   .+++||+  +++++.+++.+++++|++++|+|++++. ++..+..
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~  106 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK  106 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence            577788888887 7888998866654332222   6899999  8999999999999999999999999987 6888888


Q ss_pred             HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC--CcEEEecccCCCcHHHHHHHHH
Q psy8700         100 IWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG--CHFMETSAKTNHNVKELFAELL  169 (200)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~~~~~i~  169 (200)
                      |+..+..        .+.|++||+||+|+.+..+.  .+...+...++  ++++++||++|.|++++|..+.
T Consensus       107 ~l~~~~~--------~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          107 FLVLAEK--------NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHH--------TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHH--------CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            8776544        24899999999999765432  23455556666  8999999999999999998764

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.72  E-value=5.2e-17  Score=134.32  Aligned_cols=117  Identities=15%  Similarity=0.151  Sum_probs=80.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh--CCCCCC--------cCCC------cccce-eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK--GTFRES--------YIPT------IEDTY-RQVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~--~~~~~~--------~~~~------~~~~~-~~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      .+..+|+++|.+|+|||||+++|+.  +.+...        ....      ...+. .....+......+.+|||||+..
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   87 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD   87 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence            5578999999999999999999985  222100        0000      00000 00111112246899999999999


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      +......++..+|++++|+|++++........ |..+..        .+.|+++|+||+|+..
T Consensus        88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~~~~--------~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQATT--------YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHHH--------TTCCEEEEEECTTSTT
T ss_pred             hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHHHHH--------cCCCEEEEEECCCccc
Confidence            99999999999999999999998776666444 433433        2379999999999864

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.72  E-value=3.1e-16  Score=129.88  Aligned_cols=117  Identities=16%  Similarity=0.137  Sum_probs=81.3

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCC--CCCC--------c----------CCCcccceeEEEEe-----CCcEEEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRES--------Y----------IPTIEDTYRQVISC-----NKNICTLQ   58 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~--------~----------~~~~~~~~~~~~~~-----~~~~~~~~   58 (200)
                      ..+..+|+++|..|+|||||+++|+...  +...        +          ..+..... .....     ++..+.+.
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA-TTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece-EEEEECCccccCCceeEE
Confidence            3567899999999999999999997531  1110        0          00110000 11111     22347899


Q ss_pred             EEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          59 ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        59 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      ||||||+.++......++..+|++++|+|+++....... ..|..+..        .+.|+++++||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~--------~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK--------YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH--------cCCCEEEEEeCCCccc
Confidence            999999999999999999999999999999987655443 33433332        3489999999999864

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.72  E-value=1.5e-17  Score=129.54  Aligned_cols=159  Identities=16%  Similarity=0.206  Sum_probs=77.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCC-C--cccce-eEEE----EeCCcEEEEEEEeCCCCCCC-------
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIP-T--IEDTY-RQVI----SCNKNICTLQITDTTGSHQF-------   68 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~-~--~~~~~-~~~~----~~~~~~~~~~~~D~~G~~~~-------   68 (200)
                      +-.++|+++|++|||||||++.|++.... ..+.. .  ...+. ...+    ...+....+.+||++|....       
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            34589999999999999999999986542 11100 0  00111 1111    11233357899999997643       


Q ss_pred             hhh------------------HhhccccCC--EEEEEeeCCChhHHHHHH-HHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          69 PAM------------------QRLSISKGH--AFILVYSCTSRQSLEELR-PIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        69 ~~~------------------~~~~~~~~~--~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      ..+                  ...++.+++  +++++.+.+. .++.... .|+..+   .      ...|+|+|+||+|
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L---~------~~v~iIlVinK~D  178 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL---H------EKVNIIPLIAKAD  178 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH---T------TTSEEEEEEESTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH---h------ccCcEEEEEEccc
Confidence            121                  123344444  3444443321 2233333 233222   2      3589999999999


Q ss_pred             CCcccccCH--HHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         128 ETENREVSA--AEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       128 l~~~~~~~~--~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      +....++..  ..........++++|++|++++.++.++|..+.+.++
T Consensus       179 ll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          179 TLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred             CccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            987655443  3455566778999999999999999999888887654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.72  E-value=4.1e-18  Score=130.95  Aligned_cols=104  Identities=15%  Similarity=0.224  Sum_probs=70.9

Q ss_pred             EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE  133 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  133 (200)
                      .+.+.||||||...   .....+..+|++++|+|....+....+..             ...+.|+++|+||+|+.+...
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~-------------~~~~~p~ivVlNK~Dl~~~~~  234 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK-------------GVLELADIVVVNKADGEHHKE  234 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT-------------TSGGGCSEEEEECCCGGGHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH-------------hHhhcCCEEEEECCCCcChhH
Confidence            35799999999543   23334588999999999876543322110             123468999999999865432


Q ss_pred             cCHHHHHHHHHH----------hCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         134 VSAAEGEAEAKM----------WGCHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       134 ~~~~~~~~~~~~----------~~~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      ... ....+...          ++.+++.+||++|.|+++++++|.+.+..
T Consensus       235 ~~~-~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          235 ARL-AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHH-HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            211 11122211          25789999999999999999999998765

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.71  E-value=3.4e-17  Score=117.80  Aligned_cols=154  Identities=18%  Similarity=0.138  Sum_probs=92.5

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCC---cccc----------eeEEEEeC------------------CcE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPT---IEDT----------YRQVISCN------------------KNI   54 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~---~~~~----------~~~~~~~~------------------~~~   54 (200)
                      ...+|+++|.+|||||||+++|+...........   .+..          -......+                  ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            4578999999999999999999864211100000   0000          00001111                  123


Q ss_pred             EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc
Q psy8700          55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV  134 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  134 (200)
                      ..+.+|||+|+....   ..+....+.+++|+|+.+....     .+.......        .|+++|+||+|+.+....
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~-----~~~~~~~~~--------~~~iiv~NK~Dl~~~~~~  172 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV-----VEKHPEIFR--------VADLIVINKVALAEAVGA  172 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH-----HHHCHHHHH--------TCSEEEEECGGGHHHHTC
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh-----hhhhhhhhh--------cCCEEEEecccCCcchhh
Confidence            578899999952111   0111256889999998765321     111112222        688999999998654322


Q ss_pred             CHHHHHHHHHHh--CCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         135 SAAEGEAEAKMW--GCHFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       135 ~~~~~~~~~~~~--~~~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ............  +++++++||++|.|+.++++++.+.+...
T Consensus       173 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          173 DVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             CHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            333334444433  46899999999999999999999877544

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.69  E-value=2.4e-18  Score=132.17  Aligned_cols=158  Identities=19%  Similarity=0.176  Sum_probs=92.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCc------CCCc----------------------c-c-------------
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESY------IPTI----------------------E-D-------------   42 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~------~~~~----------------------~-~-------------   42 (200)
                      ....+|+|+|.+|||||||+|+|++..+.+..      .|+.                      . .             
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            34679999999999999999999987753221      1110                      0 0             


Q ss_pred             ------ce--eEEEEeC-CcEEEEEEEeCCCCCC-------------ChhhHhhccccCCEEE-EEeeCCChhHHHHHHH
Q psy8700          43 ------TY--RQVISCN-KNICTLQITDTTGSHQ-------------FPAMQRLSISKGHAFI-LVYSCTSRQSLEELRP   99 (200)
Q Consensus        43 ------~~--~~~~~~~-~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~~   99 (200)
                            ..  ...+.+. .....+.||||||...             +..+...++..++.++ +|++.+....  .. .
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~--~~-~  185 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA--NS-D  185 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG--GC-H
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc--hh-H
Confidence                  00  0000011 1135799999999532             2345666776665554 5566554222  11 1


Q ss_pred             HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHH--HHHHhCC-cEEEecccCCCcHHHHHHHHHH
Q psy8700         100 IWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEA--EAKMWGC-HFMETSAKTNHNVKELFAELLN  170 (200)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~~-~~~~vSa~~~~~i~~~~~~i~~  170 (200)
                      +...+....     ....|+++|+||+|+.+...........  .....++ +++.+||+++.|+.++++.+.+
T Consensus       186 ~~~i~~~~~-----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          186 ALKVAKEVD-----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHHC-----TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHhC-----cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            222233332     2458999999999997654311111100  0001232 5778999999999999998876

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.69  E-value=2.6e-17  Score=132.75  Aligned_cols=119  Identities=22%  Similarity=0.267  Sum_probs=79.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCC---CCcCCCcccceeEEEEeCCc-------E--------------------
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR---ESYIPTIEDTYRQVISCNKN-------I--------------------   54 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~--------------------   54 (200)
                      ...++|+|+|.+|+|||||+|+|++..+.   ....+++....  .+..+..       .                    
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~--~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV--AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE--EEECCSSSEEECCC------------------CCC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE--EEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            46789999999999999999999997753   22222221110  0000000       0                    


Q ss_pred             -------------EEEEEEeCCCCCC-----------ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCC
Q psy8700          55 -------------CTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGG  110 (200)
Q Consensus        55 -------------~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  110 (200)
                                   ..+.||||||...           +......++..+|++++|+|+++.........++..+..    
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----  216 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----  216 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence                         2589999999764           346667788899999999999875433444444433322    


Q ss_pred             CCCCCCCcEEEEeeCCCCCcccc
Q psy8700         111 ANELASIPIMLVGNKCDETENRE  133 (200)
Q Consensus       111 ~~~~~~~p~ivv~nK~Dl~~~~~  133 (200)
                          ...|+++|+||+|+....+
T Consensus       217 ----~~~pvilVlNK~Dl~~~~e  235 (550)
T 2qpt_A          217 ----HEDKIRVVLNKADMVETQQ  235 (550)
T ss_dssp             ----CGGGEEEEEECGGGSCHHH
T ss_pred             ----cCCCEEEEEECCCccCHHH
Confidence                3479999999999976543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.68  E-value=4.2e-15  Score=113.55  Aligned_cols=84  Identities=19%  Similarity=0.246  Sum_probs=55.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcccceeEEEEeCCc---------------EEEEEEEeCCCCCCChh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCNKN---------------ICTLQITDTTGSHQFPA   70 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~~   70 (200)
                      .++|+++|.||||||||+|+|++..... .+..++-......+.+.+.               ...+++|||||+....+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            4799999999999999999999866322 2221111111122333332               14799999999887532


Q ss_pred             ----hHh---hccccCCEEEEEeeCCC
Q psy8700          71 ----MQR---LSISKGHAFILVYSCTS   90 (200)
Q Consensus        71 ----~~~---~~~~~~~~~i~v~d~~~   90 (200)
                          +..   .+++.+|++++|+|+++
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                222   24678999999999986

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.66  E-value=8e-17  Score=123.37  Aligned_cols=102  Identities=12%  Similarity=0.214  Sum_probs=62.6

Q ss_pred             EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc
Q psy8700          55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV  134 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  134 (200)
                      +.+.++||+|.....   ......+|.+++|+|..++.....+..      .       ....|.++|+||+|+.+....
T Consensus       167 ~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~------~-------il~~~~ivVlNK~Dl~~~~~~  230 (349)
T 2www_A          167 YDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR------G-------IIEMADLVAVTKSDGDLIVPA  230 (349)
T ss_dssp             CSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-------------------------CCSCSEEEECCCSGGGHHHH
T ss_pred             CCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH------H-------HHhcCCEEEEeeecCCCchhH
Confidence            478999999964222   334678999999999887543221111      0       123578999999998643211


Q ss_pred             CHHHHHHHHH----------HhCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         135 SAAEGEAEAK----------MWGCHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       135 ~~~~~~~~~~----------~~~~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      . .....+..          .+..+++.+||++|.|+++++++|.+.+.
T Consensus       231 ~-~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          231 R-RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             H-HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            0 11111111          12457899999999999999999998764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.64  E-value=5.7e-15  Score=113.36  Aligned_cols=118  Identities=16%  Similarity=0.097  Sum_probs=76.5

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC-------hhhHhhc
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF-------PAMQRLS   75 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~   75 (200)
                      ++...+|+++|.||||||||+|+|++.... ..|..++-......+...+.  +++++||||....       .......
T Consensus        69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~  146 (376)
T 4a9a_A           69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAV  146 (376)
T ss_dssp             BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHH
T ss_pred             ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHH
Confidence            455679999999999999999999986532 22222222333334445544  7999999995432       1223345


Q ss_pred             cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                      ++.+|++++|+|++++.  .....+...+.....   ...+.|.++++||.|.
T Consensus       147 i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~---~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          147 ARTCNLLFIILDVNKPL--HHKQIIEKELEGVGI---RLNKTPPDILIKKKEK  194 (376)
T ss_dssp             HHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTE---EETCCCCCEEEEECSS
T ss_pred             HHhcCccccccccCccH--HHHHHHHHHHHHhhH---hhccCChhhhhhHhhh
Confidence            66899999999999874  344444444444322   2345677778888875

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.64  E-value=8.3e-16  Score=110.90  Aligned_cols=154  Identities=19%  Similarity=0.124  Sum_probs=87.5

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-------------EEEEeC-Cc-----------------
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-------------QVISCN-KN-----------------   53 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~-----------------   53 (200)
                      ...++|+++|++|||||||+++|+...+...+.++....+.             ..+.++ +.                 
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  115 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN  115 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence            35689999999999999999999876443333333221110             111111 10                 


Q ss_pred             --EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700          54 --ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN  131 (200)
Q Consensus        54 --~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  131 (200)
                        ...+.++|++|.-...   ..+-...+..+.+++.........  ..   ... .       ..|.++|+||+|+.+.
T Consensus       116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~---~~~-~-------~~~~iiv~NK~Dl~~~  179 (226)
T 2hf9_A          116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KH---PGI-M-------KTADLIVINKIDLADA  179 (226)
T ss_dssp             GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TC---HHH-H-------TTCSEEEEECGGGHHH
T ss_pred             cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hh---hhH-h-------hcCCEEEEeccccCch
Confidence              1145556666531110   011112344455666432111100  00   001 1       1578999999998764


Q ss_pred             cccCHHHHHHHHHHh--CCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         132 REVSAAEGEAEAKMW--GCHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       132 ~~~~~~~~~~~~~~~--~~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      ...............  +++++++||++|.|+.++|+++.+.+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          180 VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            333444444444443  5689999999999999999999987654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.61  E-value=1.3e-14  Score=111.32  Aligned_cols=82  Identities=21%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCC-CcccceeEEEEeCC-------------------cEEEEEEEeCCCCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIP-TIEDTYRQVISCNK-------------------NICTLQITDTTGSH   66 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~-~~~~~~~~~~~~~~-------------------~~~~~~~~D~~G~~   66 (200)
                      ++|+++|.||||||||+|+|.+.... ..+.. |...... ...+.+                   ....+++|||||+.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~   80 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV   80 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence            68999999999999999999875421 12211 1111111 112211                   23579999999976


Q ss_pred             CCh-------hhHhhccccCCEEEEEeeCCC
Q psy8700          67 QFP-------AMQRLSISKGHAFILVYSCTS   90 (200)
Q Consensus        67 ~~~-------~~~~~~~~~~~~~i~v~d~~~   90 (200)
                      ...       ......++.+|++++|+|+++
T Consensus        81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            532       222345788999999999985

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.60  E-value=2.3e-15  Score=126.91  Aligned_cols=118  Identities=17%  Similarity=0.147  Sum_probs=84.3

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCC--CCC------Cc----------CCCccccee-EEEE------------eCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGT--FRE------SY----------IPTIEDTYR-QVIS------------CNK   52 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~------~~----------~~~~~~~~~-~~~~------------~~~   52 (200)
                      .....+|+++|.+++|||||+++|+...  ...      .+          ..+...... ..+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            3456899999999999999999998641  100      00          011111111 1111            234


Q ss_pred             cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      ..+.+.+|||||+.++......+++.+|++++|+|++++.+.+....|. .+..        ...|+++++||+|+..
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~--------~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG--------ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH--------TTCEEEEEEECHHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH--------cCCCeEEEEECCCcch
Confidence            5789999999999999999999999999999999999988777755444 2222        3479999999999863

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.59  E-value=1.8e-14  Score=116.23  Aligned_cols=115  Identities=16%  Similarity=0.185  Sum_probs=79.5

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC--------------CCCcCCCcc-------cceeEEEEeCCcEEEEEEEeCCCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTF--------------RESYIPTIE-------DTYRQVISCNKNICTLQITDTTGS   65 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~--------------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~D~~G~   65 (200)
                      .=+|+|+|..++|||||..+|+...-              ...+.-+.+       ......+.+.-..+.+.|+||||+
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH  110 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH  110 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence            35799999999999999999963110              000000000       000111222223468999999999


Q ss_pred             CCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          66 HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      .+|..-....++-+|++|+|+|+.++-..+. ...|..+.+..        .|.++++||+|...
T Consensus       111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~~~--------lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRMRA--------TPVMTFVNKMDREA  166 (548)
T ss_dssp             GGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHHTT--------CCEEEEEECTTSCC
T ss_pred             HHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHHhC--------CceEEEEecccchh
Confidence            9999999999999999999999998766555 44555555533        89999999999754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.58  E-value=2.3e-15  Score=114.99  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=64.8

Q ss_pred             EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc
Q psy8700          55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV  134 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  134 (200)
                      +.+.+|||||......   .....+|++++|+|....+....+..     ..        ...|.++|+||+|+.+....
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~-----~~--------~~~p~ivv~NK~Dl~~~~~~  212 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK-----GL--------MEVADLIVINKDDGDNHTNV  212 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH-----HH--------HHHCSEEEECCCCTTCHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH-----hh--------hcccCEEEEECCCCCChHHH
Confidence            5799999999765333   24578999999999876543221110     00        12578999999998654222


Q ss_pred             CHH--HHHHHHHHh-------CCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         135 SAA--EGEAEAKMW-------GCHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       135 ~~~--~~~~~~~~~-------~~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      ...  .........       ..+++++||++|.|++++++.|.+.+.
T Consensus       213 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          213 AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            111  111111111       357899999999999999999998764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.57  E-value=9.3e-15  Score=107.69  Aligned_cols=114  Identities=11%  Similarity=-0.048  Sum_probs=68.1

Q ss_pred             EEEEEEeCCCCCCChhhH------hhccccCCEEEEEeeCCChhHHHHHHHHHHHH-HHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          55 CTLQITDTTGSHQFPAMQ------RLSISKGHAFILVYSCTSRQSLEELRPIWEVI-RETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      +.+.+|||||........      ...+.. +++++++|.............+... ....     ..+.|+++|+||+|
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~-----~~~~p~~iv~NK~D  182 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL-----RLGATTIPALNKVD  182 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH-----HHTSCEEEEECCGG
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc-----ccCCCeEEEEeccc
Confidence            579999999976543221      124456 8888888875432222222111111 1111     12379999999999


Q ss_pred             CCcccccCHHHH---------HH-----------------HHHHhC--CcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         128 ETENREVSAAEG---------EA-----------------EAKMWG--CHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       128 l~~~~~~~~~~~---------~~-----------------~~~~~~--~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      +....+......         ..                 .....+  .+++++||+++.|+++++++|.+.+..
T Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          183 LLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             GCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            875432110000         00                 012333  489999999999999999999987743

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.56  E-value=4.8e-15  Score=122.42  Aligned_cols=155  Identities=17%  Similarity=0.154  Sum_probs=93.7

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCccccee---------------------------------------
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYR---------------------------------------   45 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~---------------------------------------   45 (200)
                      ...+|+|+|.+++|||||+|+|++..+-+ ...+.+.....                                       
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            45799999999999999999999876511 11111100000                                       


Q ss_pred             ----------EEEEe-CCcEEEEEEEeCCCCCC-------------ChhhHhhcc-ccCCEEEEEeeCCChhHHHHHHHH
Q psy8700          46 ----------QVISC-NKNICTLQITDTTGSHQ-------------FPAMQRLSI-SKGHAFILVYSCTSRQSLEELRPI  100 (200)
Q Consensus        46 ----------~~~~~-~~~~~~~~~~D~~G~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~  100 (200)
                                ....+ ......+.|+||||...             ...+...++ ..+|++++|+|++......+...+
T Consensus       130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l  209 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  209 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred             CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence                      00000 00112578999999654             122334444 468999999999864332222122


Q ss_pred             HHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH----hC-CcEEEecccCCCcHHHHHHHHHH
Q psy8700         101 WEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM----WG-CHFMETSAKTNHNVKELFAELLN  170 (200)
Q Consensus       101 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~-~~~~~vSa~~~~~i~~~~~~i~~  170 (200)
                         +....     ....|+++|+||+|+.+........ .. ...    .+ .+++.+||++|.|++++++.+.+
T Consensus       210 ---l~~L~-----~~g~pvIlVlNKiDlv~~~~~~~~i-l~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          210 ---AKEVD-----PQGQRTIGVITKLDLMDEGTDARDV-LE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             ---HHHHC-----TTCSSEEEEEECTTSSCTTCCSHHH-HT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             ---HHHHH-----hcCCCEEEEEeCcccCCcchhhHHH-HH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence               22222     2458999999999998654432211 11 111    12 25778999999999999999887

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.54  E-value=2.4e-14  Score=109.11  Aligned_cols=104  Identities=13%  Similarity=0.190  Sum_probs=64.3

Q ss_pred             EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE  133 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  133 (200)
                      ...+.|+||+|......   .....+|.+++++|....+..+.+..   .+.          ..|.++++||+|+.....
T Consensus       147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~---~i~----------~~~~ivvlNK~Dl~~~~~  210 (337)
T 2qm8_A          147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKK---GIF----------ELADMIAVNKADDGDGER  210 (337)
T ss_dssp             TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCT---THH----------HHCSEEEEECCSTTCCHH
T ss_pred             CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHH---HHh----------ccccEEEEEchhccCchh
Confidence            35799999999754322   23468999999999865432211110   011          135588889999754322


Q ss_pred             cCHHHHHHHHHH----------hCCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         134 VSAAEGEAEAKM----------WGCHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       134 ~~~~~~~~~~~~----------~~~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      ........+...          +..+++.+||+++.|++++++.|.+.+.
T Consensus       211 ~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          211 RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            111112222221          1457899999999999999999998764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.46  E-value=4.8e-14  Score=115.77  Aligned_cols=114  Identities=22%  Similarity=0.263  Sum_probs=79.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh--CCCCC--------CcCCCc------c-cceeEEEEeCCcEEEEEEEeCCCCCCChh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK--GTFRE--------SYIPTI------E-DTYRQVISCNKNICTLQITDTTGSHQFPA   70 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~--~~~~~--------~~~~~~------~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~   70 (200)
                      -+|+++|..++|||||+.+|+.  +....        .+..+.      + ........+.-..+.+.|+||||+.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            4689999999999999999973  11111        000000      0 00011122233345799999999999999


Q ss_pred             hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          71 MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      .....++-+|++++|+|+.++-..+. ...|..+....        .|.++++||+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~~--------lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKMG--------IPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHHT--------CSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHcC--------CCeEEEEecccccc
Confidence            99999999999999999998765554 45565566555        78899999999754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.43  E-value=1.6e-12  Score=97.70  Aligned_cols=97  Identities=19%  Similarity=0.111  Sum_probs=77.2

Q ss_pred             CCCChhhHhhccccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC-HHHHHHH
Q psy8700          65 SHQFPAMQRLSISKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS-AAEGEAE  142 (200)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~  142 (200)
                      +++++.+.+.++.++|++++|+|++++. ++..+..|+..+..        .+.|+++|+||+|+.+..+.. ......+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--------~~~~~ilV~NK~DL~~~~~v~~~~~~~~~  137 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--------FKVEPVIVFNKIDLLNEEEKKELERWISI  137 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--------TTCEEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--------CCCCEEEEEEcccCCCccccHHHHHHHHH
Confidence            7778888889999999999999999986 78888888876554        338999999999997654222 2233444


Q ss_pred             HHHhCCcEEEecccCCCcHHHHHHHHH
Q psy8700         143 AKMWGCHFMETSAKTNHNVKELFAELL  169 (200)
Q Consensus       143 ~~~~~~~~~~vSa~~~~~i~~~~~~i~  169 (200)
                      ....+++++++||++|.|++++++.+.
T Consensus       138 ~~~~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          138 YRDAGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             HHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence            556688999999999999999998654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.42  E-value=9.9e-12  Score=103.34  Aligned_cols=115  Identities=16%  Similarity=0.174  Sum_probs=79.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC--------CC--CCcCCCcc-c-----ce---eEEEEeC-----CcEEEEEEEe
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGT--------FR--ESYIPTIE-D-----TY---RQVISCN-----KNICTLQITD   61 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~--------~~--~~~~~~~~-~-----~~---~~~~~~~-----~~~~~~~~~D   61 (200)
                      +.-+|+++|..++|||||+.+|+...        ..  ..+.-+.. +     +.   .......     ...+.+.++|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            34579999999999999999996311        10  01111110 0     00   0111111     2357899999


Q ss_pred             CCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        62 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      |||+.+|..-....++-+|++++|+|+.++-..+. ...|..+....        .|.++++||+|..
T Consensus        92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~~~--------lp~i~~iNKiDr~  150 (709)
T 4fn5_A           92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANKYG--------VPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHHT--------CCEEEEEECSSST
T ss_pred             CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHHcC--------CCeEEEEcccccc
Confidence            99999999999999999999999999998765555 44555555544        7999999999974

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.38  E-value=4.7e-13  Score=93.67  Aligned_cols=111  Identities=11%  Similarity=0.025  Sum_probs=69.6

Q ss_pred             CCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC-CCCcccccCHHHHH
Q psy8700          62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC-DETENREVSAAEGE  140 (200)
Q Consensus        62 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~  140 (200)
                      .+|++..+.+|..|+.++|++|||+|.+|.+.+. ....+..+.............|++|++||. |+++..  ...+..
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Am--s~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM--PCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBC--CHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCC--CHHHHH
Confidence            3478899999999999999999999999986544 233222233332211123678999999995 775543  222222


Q ss_pred             HHHH----HhCCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         141 AEAK----MWGCHFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       141 ~~~~----~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ....    .....++.|||.+|+|+.+-++|+.+.+..+
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            1111    1234689999999999999999999877544

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.36  E-value=1.3e-12  Score=100.79  Aligned_cols=88  Identities=14%  Similarity=0.147  Sum_probs=50.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCc---------------EEEEEEEeCCCCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKN---------------ICTLQITDTTGSHQF   68 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~   68 (200)
                      ....+|+++|.+|||||||+|+|.+........|..+ ......+.+.+.               ...+++|||||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            4568999999999999999999998754222222221 222223333332               235999999997754


Q ss_pred             hh-------hHhhccccCCEEEEEeeCCChh
Q psy8700          69 PA-------MQRLSISKGHAFILVYSCTSRQ   92 (200)
Q Consensus        69 ~~-------~~~~~~~~~~~~i~v~d~~~~~   92 (200)
                      .+       ....+++.+|++++|+|+.+..
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            33       4456778999999999987643

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.35  E-value=9.4e-11  Score=90.60  Aligned_cols=86  Identities=16%  Similarity=0.188  Sum_probs=58.1

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCC-CCCcCCC-cccceeEEEEeCCc---------------EEEEEEEeCCCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF-RESYIPT-IEDTYRQVISCNKN---------------ICTLQITDTTGSHQ   67 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~   67 (200)
                      ....+++++|++|||||||+|+|++... .....|. +-......+.+.+.               ...+.+||+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            3457999999999999999999998654 2222222 22333334444431               13689999999443


Q ss_pred             -------ChhhHhhccccCCEEEEEeeCCC
Q psy8700          68 -------FPAMQRLSISKGHAFILVYSCTS   90 (200)
Q Consensus        68 -------~~~~~~~~~~~~~~~i~v~d~~~   90 (200)
                             ........+..+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   23344556678999999999863

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.24  E-value=3.9e-12  Score=93.24  Aligned_cols=108  Identities=10%  Similarity=-0.000  Sum_probs=72.3

Q ss_pred             CCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHH---HHHHHHHHhCCCCCCCCCcEEEEeeC-CCCCcccccCHH
Q psy8700          62 TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRP---IWEVIRETKGGANELASIPIMLVGNK-CDETENREVSAA  137 (200)
Q Consensus        62 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~ivv~nK-~Dl~~~~~~~~~  137 (200)
                      .+|++..+.++..|+.++|++|||+|.+|.+.+.....   +...+.+..    ...+.|++|++|| .|+++...  ..
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~----~l~~apLLVfANKkQDlp~Ams--~~  267 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAF----GSSGRPLLVLSCISQGDVKRMP--CF  267 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHH----HCTTCCEEEEEEESSTTSCBCC--HH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchh----hcCCCeEEEEeCCcccccCCCC--HH
Confidence            46789999999999999999999999999876542221   112222211    1255899999996 58865432  22


Q ss_pred             HHHHHHH----HhCCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         138 EGEAEAK----MWGCHFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       138 ~~~~~~~----~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      +..+...    .....++.|||.+|+|+.+-++|+.+.+..+
T Consensus       268 EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          268 YLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             HHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             HHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            2221111    1233689999999999999999999877544

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.04  E-value=9.5e-10  Score=85.63  Aligned_cols=138  Identities=14%  Similarity=0.151  Sum_probs=68.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCccccee--EEEEe--CCcEEEEEEEeCCCCCCCh-------------
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYR--QVISC--NKNICTLQITDTTGSHQFP-------------   69 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~~~~D~~G~~~~~-------------   69 (200)
                      ++++++|++|||||||+|.|.+..+... .....+....  ..+..  .+....+.++|++|.....             
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            5799999999999999999988643211 1110111111  11111  2222478999999864320             


Q ss_pred             -hhH----hhc---------ccc--CCE-EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700          70 -AMQ----RLS---------ISK--GHA-FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR  132 (200)
Q Consensus        70 -~~~----~~~---------~~~--~~~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  132 (200)
                       ...    ..+         ..+  +|+ ++|+.|...+-+..+    ...+....      ...|+++|.||+|...+.
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~------~~~~vI~Vi~KtD~Lt~~  192 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLD------SKVNIIPIIAKADAISKS  192 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTC------SCSEEEEEESCGGGSCHH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHh------hCCCEEEEEcchhccchH
Confidence             111    111         111  233 555666543322222    12222222      458999999999987655


Q ss_pred             ccCHHHHHHH--HHHhCCcEEEecc
Q psy8700         133 EVSAAEGEAE--AKMWGCHFMETSA  155 (200)
Q Consensus       133 ~~~~~~~~~~--~~~~~~~~~~vSa  155 (200)
                      +.........  ....|+++|.+|.
T Consensus       193 E~~~l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          193 ELTKFKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHHHHHHcCCcEEecCC
Confidence            4322211111  2234566666664

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.02  E-value=1.2e-09  Score=87.05  Aligned_cols=151  Identities=13%  Similarity=0.147  Sum_probs=84.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHh------hCCC----CCCcCCCccc-------ce-eEEEE-----------------
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFV------KGTF----RESYIPTIED-------TY-RQVIS-----------------   49 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~------~~~~----~~~~~~~~~~-------~~-~~~~~-----------------   49 (200)
                      .....|+++|.+||||||++++|.      +...    ...+.+....       .. ...+.                 
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345689999999999999999998      3221    0111111100       00 00000                 


Q ss_pred             eCCcEEEEEEEeCCCCCCCh-hhHhh---c--cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcE-EEE
Q psy8700          50 CNKNICTLQITDTTGSHQFP-AMQRL---S--ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI-MLV  122 (200)
Q Consensus        50 ~~~~~~~~~~~D~~G~~~~~-~~~~~---~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv  122 (200)
                      .....+.+.|+||||..... .+...   .  +..+|.+++|+|........   .....+...         .|+ .||
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~---------~~i~gvV  246 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK---------VDVASVI  246 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH---------HCCCCEE
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh---------cCceEEE
Confidence            00033589999999976432 11111   1  22689999999998753311   112222221         354 899


Q ss_pred             eeCCCCCcccccCHHHHHHHHHHhCCcE------------------EEecccCCCc-HHHHHHHHHHH
Q psy8700         123 GNKCDETENREVSAAEGEAEAKMWGCHF------------------METSAKTNHN-VKELFAELLNL  171 (200)
Q Consensus       123 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~------------------~~vSa~~~~~-i~~~~~~i~~~  171 (200)
                      +||+|.....  ...  .......+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       247 lNK~D~~~~~--g~~--l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          247 VTKLDGHAKG--GGA--LSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             EECTTSCCCC--THH--HHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             EeCCccccch--HHH--HHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            9999976322  111  11223444443                  3368889988 99999988776

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.02  E-value=1.3e-10  Score=89.54  Aligned_cols=139  Identities=16%  Similarity=0.123  Sum_probs=80.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhC------CCCCCcCCCccccee--EEEEeCCcEEEEEEEeCCCCCCChh--------
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKG------TFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGSHQFPA--------   70 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~--------   70 (200)
                      ..+|+++|.+|+|||||+|+|.+.      .......+   +++.  .....+..   +.++||||......        
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~---gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~  235 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP---GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDAR  235 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT---TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC---CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHH
Confidence            357999999999999999999875      11111111   2222  22233333   79999999653321        


Q ss_pred             hHhhcc--ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCC
Q psy8700          71 MQRLSI--SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGC  148 (200)
Q Consensus        71 ~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  148 (200)
                      ....++  ...+.++++++......+..+..    +....     ..+.|+++++||.|..+..+.. .....+.+..|.
T Consensus       236 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~-----~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~  305 (369)
T 3ec1_A          236 DLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIK-----GGRRSFVCYMANELTVHRTKLE-KADSLYANQLGE  305 (369)
T ss_dssp             THHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEE-----SSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTT
T ss_pred             HHHHHhcccccCceEEEEcCCceEEECCEEE----EEEcc-----CCCceEEEEecCCcccccccHH-HHHHHHHHhcCC
Confidence            111122  45788899887632211111000    11111     2457999999999988765543 334556666777


Q ss_pred             cEEEecccCCCcH
Q psy8700         149 HFMETSAKTNHNV  161 (200)
Q Consensus       149 ~~~~vSa~~~~~i  161 (200)
                      .+...++....++
T Consensus       306 ~l~p~~~~~~~~~  318 (369)
T 3ec1_A          306 LLSPPSKRYAAEF  318 (369)
T ss_dssp             TBCSSCGGGTTTC
T ss_pred             ccCCCCchhhhhc
Confidence            7776666554443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.00  E-value=1.6e-08  Score=78.73  Aligned_cols=162  Identities=17%  Similarity=0.079  Sum_probs=86.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcc-cce-eEEEEeCCcEEEEEEEeCCCCCCC----hh-hHhhcccc
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIE-DTY-RQVISCNKNICTLQITDTTGSHQF----PA-MQRLSISK   78 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~D~~G~~~~----~~-~~~~~~~~   78 (200)
                      ...++++|++|||||||+|.+.+-..... ...... ... ...+........+.+||++|....    .. +...-+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            45799999999999999999988332111 000000 000 011111111125789999995321    11 11112333


Q ss_pred             CCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc-------ccccCHHH----HHHHH----
Q psy8700          79 GHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE-------NREVSAAE----GEAEA----  143 (200)
Q Consensus        79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~----~~~~~----  143 (200)
                      .+..++ ++.....  +.-..+...+..        ...|+++|.||.|+.-       -+......    ...+.    
T Consensus       149 ~~~~~~-lS~G~~~--kqrv~la~aL~~--------~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l  217 (413)
T 1tq4_A          149 YDFFII-ISATRFK--KNDIDIAKAISM--------MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF  217 (413)
T ss_dssp             CSEEEE-EESSCCC--HHHHHHHHHHHH--------TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCeEE-eCCCCcc--HHHHHHHHHHHh--------cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            455554 6665211  111122222332        2379999999999741       11111111    11221    


Q ss_pred             HHhC---CcEEEecc--cCCCcHHHHHHHHHHHHhccchhH
Q psy8700         144 KMWG---CHFMETSA--KTNHNVKELFAELLNLEKNRNISL  179 (200)
Q Consensus       144 ~~~~---~~~~~vSa--~~~~~i~~~~~~i~~~~~~~~~~~  179 (200)
                      ...+   ..++.+|+  ..+.|++++.+.+.+.+.+.....
T Consensus       218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~  258 (413)
T 1tq4_A          218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN  258 (413)
T ss_dssp             HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred             HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence            1222   36788999  666779999999999887666544

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.94  E-value=1.6e-09  Score=83.50  Aligned_cols=97  Identities=14%  Similarity=0.091  Sum_probs=71.4

Q ss_pred             CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHH----
Q psy8700          64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG----  139 (200)
Q Consensus        64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----  139 (200)
                      ..+.|.++...+.+.++++++|+|+.++.     ..|...+.+..      .+.|+++|+||+|+..... .....    
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~------~~~p~ilV~NK~DL~~~~~-~~~~~~~~l  122 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV------GNNKVLLVGNKADLIPKSV-KHDKVKHWM  122 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS------SSSCEEEEEECGGGSCTTS-CHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh------CCCcEEEEEEChhcCCccc-CHHHHHHHH
Confidence            34678889999999999999999999864     34444455543      3589999999999975432 12222    


Q ss_pred             HHHHHHhCC---cEEEecccCCCcHHHHHHHHHHHH
Q psy8700         140 EAEAKMWGC---HFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       140 ~~~~~~~~~---~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      .......++   +++.+||++|.|++++++.+.+..
T Consensus       123 ~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          123 RYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            223445666   799999999999999999998755

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.91  E-value=1.8e-10  Score=88.73  Aligned_cols=137  Identities=14%  Similarity=0.069  Sum_probs=75.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCC----CcCCCccccee--EEEEeCCcEEEEEEEeCCCCCCChh--------hH
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRE----SYIPTIEDTYR--QVISCNKNICTLQITDTTGSHQFPA--------MQ   72 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~--------~~   72 (200)
                      ..+|+++|.+|+|||||+|+|.+.....    ......+.++.  ....+...   +.++||||......        ..
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            3589999999999999999998753211    11112222222  12233333   88999999654321        11


Q ss_pred             hhc--cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcE
Q psy8700          73 RLS--ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHF  150 (200)
Q Consensus        73 ~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  150 (200)
                      ..+  ....+.++++++.........+..    +....     ....|+++++||.|..+..+. ......+.+..|..+
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~-----~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l  306 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVS-----GGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLL  306 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEE-----SSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTB
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceEE----EEEec-----CCCceEEEEecCccccccccH-HHHHHHHHHHhCCcc
Confidence            111  245677888887632111111000    11111     245799999999998876543 333445566667666


Q ss_pred             EEeccc
Q psy8700         151 METSAK  156 (200)
Q Consensus       151 ~~vSa~  156 (200)
                      +..++.
T Consensus       307 ~p~~~~  312 (368)
T 3h2y_A          307 SPPTPE  312 (368)
T ss_dssp             CSSCHH
T ss_pred             CCCchh
Confidence            655543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.85  E-value=1.1e-08  Score=75.55  Aligned_cols=136  Identities=22%  Similarity=0.277  Sum_probs=69.5

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCC--------cCCCcccceeEEEEeCCc--EEEEEEEeCCCCCCC-------h
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRES--------YIPTIEDTYRQVISCNKN--ICTLQITDTTGSHQF-------P   69 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~--~~~~~~~D~~G~~~~-------~   69 (200)
                      .++++++|+.|||||||+|.|.+......        ..+.........+.....  ...+.++|++|....       .
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            47899999999999999999987332110        001000001111111111  136789999984321       1


Q ss_pred             hhH---------------------hhccccCCEEEEEeeCC-ChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          70 AMQ---------------------RLSISKGHAFILVYSCT-SRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        70 ~~~---------------------~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      .+.                     ...+..+.+.++++|-. .+-.-.+    ...+.....     . .++++|++|+|
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~-----~-~~vI~Vi~K~D  151 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSK-----V-VNIIPVIAKAD  151 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHT-----T-SEEEEEETTGG
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHh-----c-CcEEEEEeccc
Confidence            100                     01122357788888743 2211111    233444442     2 79999999999


Q ss_pred             CCcccccCHHH--HHHHHHHhCCcEEE
Q psy8700         128 ETENREVSAAE--GEAEAKMWGCHFME  152 (200)
Q Consensus       128 l~~~~~~~~~~--~~~~~~~~~~~~~~  152 (200)
                      .....+.....  ........++.+|.
T Consensus       152 ~lt~~e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          152 TMTLEEKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCccccC
Confidence            87655433221  22223445666554

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.84  E-value=2.8e-09  Score=82.17  Aligned_cols=98  Identities=15%  Similarity=0.105  Sum_probs=70.8

Q ss_pred             CCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH---
Q psy8700          64 GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE---  140 (200)
Q Consensus        64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---  140 (200)
                      .++.|.++...++.+++++++|+|+.++.+     .|...+.+..      .+.|+++|+||+|+..... ......   
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l------~~~piilV~NK~DLl~~~~-~~~~~~~~l  124 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA------ADNPILLVGNKADLLPRSV-KYPKLLRWM  124 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC------TTSCEEEEEECGGGSCTTC-CHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh------CCCCEEEEEEChhcCCCcc-CHHHHHHHH
Confidence            477889999999999999999999999763     2333334333      3579999999999975432 112222   


Q ss_pred             -HHHHHhCC---cEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         141 -AEAKMWGC---HFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       141 -~~~~~~~~---~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                       ......|.   .++.+||++|.|++++++.+.+...
T Consensus       125 ~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          125 RRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence             22344565   6899999999999999999987653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.72  E-value=1.9e-08  Score=74.71  Aligned_cols=58  Identities=26%  Similarity=0.351  Sum_probs=36.5

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee--EEEEeCCcEEEEEEEeCCCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      ...++++++|.||+|||||+|+|.+.....  ....+++++  ..+....   .+.++||||...
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~--~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  177 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK--TGDRPGITTSQQWVKVGK---ELELLDTPGILW  177 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceee--cCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence            457899999999999999999999865311  111111111  1222222   489999999653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.72  E-value=8.6e-08  Score=75.06  Aligned_cols=135  Identities=18%  Similarity=0.196  Sum_probs=73.9

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh------CCC----CCCcCCCc-------ccceeE-EEEe-----------------
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK------GTF----RESYIPTI-------EDTYRQ-VISC-----------------   50 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~------~~~----~~~~~~~~-------~~~~~~-~~~~-----------------   50 (200)
                      ++..|+++|++|+||||++..|..      ...    ...+.+..       ...... .+..                 
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            467899999999999999998863      110    01111100       000000 0000                 


Q ss_pred             CCcEEEEEEEeCCCCCCChh-hHh-----hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEee
Q psy8700          51 NKNICTLQITDTTGSHQFPA-MQR-----LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN  124 (200)
Q Consensus        51 ~~~~~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  124 (200)
                      ....+.+.++||+|...... +..     .....+|.+++|+|+.......   .....+....        .+..||+|
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~~--------~i~gVIlT  247 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEAT--------PIGSIIVT  247 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHSC--------TTEEEEEE
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhhC--------CCeEEEEE
Confidence            01226799999999553221 111     1122578999999987653322   2222232222        35679999


Q ss_pred             CCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700         125 KCDETENREVSAAEGEAEAKMWGCHFMETSA  155 (200)
Q Consensus       125 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  155 (200)
                      |.|.....    -.........+.|+..++.
T Consensus       248 KlD~~~~g----G~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          248 KLDGSAKG----GGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             CCSSCSSH----HHHHHHHHTTCCCEEEEEC
T ss_pred             CCCCcccc----cHHHHHHHHHCCCEEEEEc
Confidence            99975322    1223334457888877765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.71  E-value=2.2e-08  Score=74.33  Aligned_cols=103  Identities=9%  Similarity=0.059  Sum_probs=69.5

Q ss_pred             EEeCCCCC-CChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH
Q psy8700          59 ITDTTGSH-QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA  137 (200)
Q Consensus        59 ~~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  137 (200)
                      +-..||+. .........+..+|+++.|+|+.++.+....     .+.+..      ...|.++|+||+|+.+...  ..
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-----~l~~~l------~~kp~ilVlNK~DL~~~~~--~~   69 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDIL------KNKPRIMLLNKADKADAAV--TQ   69 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHC------SSSCEEEEEECGGGSCHHH--HH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-----HHHHHH------CCCCEEEEEECcccCCHHH--HH
Confidence            34567865 3456667788999999999999998765431     112222      3489999999999976321  11


Q ss_pred             HHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         138 EGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       138 ~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      ....+....+++++.+||+++.|+.++++.+.+.+.+
T Consensus        70 ~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           70 QWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            2223333457799999999999999999998887754

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.64  E-value=2e-08  Score=78.83  Aligned_cols=103  Identities=16%  Similarity=0.103  Sum_probs=56.7

Q ss_pred             EEEEEEEeCCCCCCChh-hHh-----hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCC-c-EEEEeeC
Q psy8700          54 ICTLQITDTTGSHQFPA-MQR-----LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI-P-IMLVGNK  125 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK  125 (200)
                      .+.+.++||||...... +..     ..+..+|.+++|+|......   .   +..+....      ... | ..+|+||
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~---~~~~~~~~------~~~~~i~gvVlnK  247 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---A---GIQAKAFK------EAVGEIGSIIVTK  247 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---H---HHHHHHHH------TTSCSCEEEEEEC
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---H---HHHHHHHh------hcccCCeEEEEeC
Confidence            35789999999765322 111     12236899999999875532   1   11222222      224 5 7899999


Q ss_pred             CCCCcccccCHHHHHHHHHHhCCcEEEe------------------cccCCCc-HHHHHHHHHHHH
Q psy8700         126 CDETENREVSAAEGEAEAKMWGCHFMET------------------SAKTNHN-VKELFAELLNLE  172 (200)
Q Consensus       126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v------------------Sa~~~~~-i~~~~~~i~~~~  172 (200)
                      +|.....   . .........+.++..+                  |+..|.| +..+++.+.+.+
T Consensus       248 ~D~~~~~---g-~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~  309 (432)
T 2v3c_C          248 LDGSAKG---G-GALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV  309 (432)
T ss_dssp             SSSCSTT---H-HHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred             CCCccch---H-HHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            9974321   1 1222444555554443                  5555555 555555554443

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.63  E-value=2.1e-08  Score=73.62  Aligned_cols=56  Identities=23%  Similarity=0.201  Sum_probs=34.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      ++++++|.+|+|||||+|+|.+..... ..+..+.+. ...+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            599999999999999999999866421 111111111 11222222   589999999654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.57  E-value=7.4e-08  Score=78.09  Aligned_cols=63  Identities=21%  Similarity=0.158  Sum_probs=40.1

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEE-E---Ee-CCcEEEEEEEeCCCCCC
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV-I---SC-NKNICTLQITDTTGSHQ   67 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~D~~G~~~   67 (200)
                      .+.++|+|+|.||+|||||+|+|++....-....+....+... .   .. ......+.++||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            4568899999999999999999998653212222221222111 1   11 12334799999999654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.40  E-value=4.3e-07  Score=68.00  Aligned_cols=93  Identities=15%  Similarity=0.196  Sum_probs=61.7

Q ss_pred             CCChhhHhhccccCCEEEEEeeCCChhH-HHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc--CHHHHHHH
Q psy8700          66 HQFPAMQRLSISKGHAFILVYSCTSRQS-LEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV--SAAEGEAE  142 (200)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~  142 (200)
                      ++.+.+.+..+.++|.+++|+|+.+|.. ...+..++.....        ...|.+||+||+|+.+..+.  ........
T Consensus        74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--------~~~~~vivlnK~DL~~~~~~~~~~~~~~~~  145 (307)
T 1t9h_A           74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--------NDIQPIICITKMDLIEDQDTEDTIQAYAED  145 (307)
T ss_dssp             CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--------TTCEEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred             chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--------CCCCEEEEEECCccCchhhhHHHHHHHHHH
Confidence            3445566668899999999999997764 3333333322222        34789999999999765321  11222333


Q ss_pred             HHHhCCcEEEecccCCCcHHHHHH
Q psy8700         143 AKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus       143 ~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      ....|++++.+||.++.|++++++
T Consensus       146 y~~~g~~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          146 YRNIGYDVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             HHHHTCCEEECCHHHHTTCTTTGG
T ss_pred             HHhCCCeEEEEecCCCCCHHHHHh
Confidence            445688999999999888776654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.40  E-value=6.2e-07  Score=70.17  Aligned_cols=87  Identities=16%  Similarity=0.097  Sum_probs=50.9

Q ss_pred             EEEEEEEeCCCCCC--Ch-hhHhh-----ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeC
Q psy8700          54 ICTLQITDTTGSHQ--FP-AMQRL-----SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK  125 (200)
Q Consensus        54 ~~~~~~~D~~G~~~--~~-~~~~~-----~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  125 (200)
                      .+.+.++||||...  .. .+...     .....+.+++|+|.......   ......+.+..        .+..||+||
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~~--------~~~gVIlTK  247 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQAS--------PIGSVIITK  247 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHHC--------SSEEEEEEC
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhccc--------CCcEEEEec
Confidence            45788999999543  11 11111     11245899999998765332   22233333333        467899999


Q ss_pred             CCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700         126 CDETENREVSAAEGEAEAKMWGCHFMETSA  155 (200)
Q Consensus       126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  155 (200)
                      .|....    .-.........+.|+..++.
T Consensus       248 lD~~a~----~G~als~~~~~g~Pi~fig~  273 (433)
T 3kl4_A          248 MDGTAK----GGGALSAVVATGATIKFIGT  273 (433)
T ss_dssp             GGGCSC----HHHHHHHHHHHTCEEEEEEC
T ss_pred             cccccc----chHHHHHHHHHCCCEEEEEC
Confidence            996432    11233344457888887775

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.32  E-value=2.8e-06  Score=63.47  Aligned_cols=91  Identities=16%  Similarity=0.135  Sum_probs=53.0

Q ss_pred             EEEEEEEeCCCCCC--Chh-hHh-----hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEee
Q psy8700          54 ICTLQITDTTGSHQ--FPA-MQR-----LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGN  124 (200)
Q Consensus        54 ~~~~~~~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~n  124 (200)
                      .+.+.++||||...  ... +..     .....+|.+++|+|.....   +...   .+....      +..| ..+|+|
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~---~~~~~~------~~~~i~gvVln  247 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYD---LASKFN------QASKIGTIIIT  247 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHH---HHHHHH------HTCTTEEEEEE
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHH---HHHHHH------hhCCCCEEEEe
Confidence            45799999999776  322 221     1234689999999986432   2111   122222      1144 678999


Q ss_pred             CCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700         125 KCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus       125 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      |.|....    .-.........+.|+..++  .|++++
T Consensus       248 k~D~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~  279 (297)
T 1j8m_F          248 KMDGTAK----GGGALSAVAATGATIKFIG--TGEKID  279 (297)
T ss_dssp             CGGGCTT----HHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred             CCCCCcc----hHHHHHHHHHHCcCEEEEe--CCCChh
Confidence            9996432    1123345556778888776  455553

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.22  E-value=1.1e-06  Score=64.52  Aligned_cols=94  Identities=11%  Similarity=-0.020  Sum_probs=62.2

Q ss_pred             CCCCCC-ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH
Q psy8700          62 TTGSHQ-FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE  140 (200)
Q Consensus        62 ~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  140 (200)
                      .||+.. ........+.++|+++.|+|+.++.+.....  +. +         . ..|.++|+||+|+.+...  .....
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---------l-~k~~iivlNK~DL~~~~~--~~~~~   68 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---------S-RKETIILLNKVDIADEKT--TKKWV   68 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---------T-TSEEEEEEECGGGSCHHH--HHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---------c-CCCcEEEEECccCCCHHH--HHHHH
Confidence            366543 3456677888999999999999887654311  00 0         1 479999999999976422  11223


Q ss_pred             HHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy8700         141 AEAKMWGCHFMETSAKTNHNVKELFAELLNL  171 (200)
Q Consensus       141 ~~~~~~~~~~~~vSa~~~~~i~~~~~~i~~~  171 (200)
                      .+....+.++ .+||+++.|+.++++.+...
T Consensus        69 ~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           69 EFFKKQGKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             HHHHHTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             HHHHHcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence            3334457788 99999999999998877553

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.20  E-value=8.1e-06  Score=61.78  Aligned_cols=89  Identities=10%  Similarity=0.043  Sum_probs=49.3

Q ss_pred             EEEEEeCCCCCCChhh-Hhh-----ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          56 TLQITDTTGSHQFPAM-QRL-----SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        56 ~~~~~D~~G~~~~~~~-~~~-----~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      .+.++|++|....... ...     ..-..|-.++++|.....   +.......+....        ...+|++||.|..
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--------~it~iilTKlD~~  281 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--------KIDGIILTKLDAD  281 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--------CCCEEEEECGGGC
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--------CCCEEEEeCcCCc
Confidence            5678999996432211 110     111368888999976543   2223333333333        2448899999952


Q ss_pred             cccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700         130 ENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      ..   . -.........+.|+..++  .|+++
T Consensus       282 a~---~-G~~l~~~~~~~~pi~~i~--~Ge~v  307 (328)
T 3e70_C          282 AR---G-GAALSISYVIDAPILFVG--VGQGY  307 (328)
T ss_dssp             SC---C-HHHHHHHHHHTCCEEEEE--CSSST
T ss_pred             cc---h-hHHHHHHHHHCCCEEEEe--CCCCc
Confidence            21   1 123345556788888877  55544

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.14  E-value=1.1e-05  Score=61.62  Aligned_cols=84  Identities=15%  Similarity=0.132  Sum_probs=54.8

Q ss_pred             ccccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccC-HHHHHHHHHHhCCcEEE
Q psy8700          75 SISKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVS-AAEGEAEAKMWGCHFME  152 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~  152 (200)
                      ...++|.+++|.+. +|. +...+..++.......        .|.+||+||+|+.+..... ...........|++++.
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~~--------~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~  197 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETLQ--------VEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLM  197 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHHT--------CEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhcC--------CCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEE
Confidence            46789999988765 454 3334444443333333        6889999999997643210 11122233456789999


Q ss_pred             ecccCCCcHHHHHHH
Q psy8700         153 TSAKTNHNVKELFAE  167 (200)
Q Consensus       153 vSa~~~~~i~~~~~~  167 (200)
                      +|+.++.|++++...
T Consensus       198 ~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          198 VSSHTQDGLKPLEEA  212 (358)
T ss_dssp             CBTTTTBTHHHHHHH
T ss_pred             EecCCCcCHHHHHHh
Confidence            999999999988764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.11  E-value=4e-06  Score=68.67  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      ..|+|+|+.|||||||++.+.+-
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSC
T ss_pred             CeEEEECCCCChHHHHHHHHhCC
Confidence            35999999999999999999875

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.03  E-value=8.5e-05  Score=58.41  Aligned_cols=24  Identities=33%  Similarity=0.205  Sum_probs=21.3

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +-.-|+|+|++++|||||+|+|++
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhh
Confidence            446689999999999999999986

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.86  E-value=7.7e-07  Score=70.74  Aligned_cols=100  Identities=14%  Similarity=0.077  Sum_probs=55.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCC--ChhhH--------h
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQ--FPAMQ--------R   73 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~--~~~~~--------~   73 (200)
                      .....|+++|.+||||||+.++|...-. ....++...... ......+......+||..|...  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999875321 011111100000 0000011112346788888622  22222        4


Q ss_pred             hccccCCEEEEEeeCCChhHHHHHHHHHHHHHH
Q psy8700          74 LSISKGHAFILVYSCTSRQSLEELRPIWEVIRE  106 (200)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~  106 (200)
                      .++...++.++|+|.++. +......|+..+..
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~  147 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ  147 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence            455567888999999987 34444555554444

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.69  E-value=2.5e-05  Score=53.83  Aligned_cols=21  Identities=38%  Similarity=0.812  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +++++|++|||||||++.+.+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999876

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.69  E-value=3.3e-05  Score=54.19  Aligned_cols=88  Identities=10%  Similarity=0.012  Sum_probs=54.9

Q ss_pred             EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE  133 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  133 (200)
                      .+.+.++|+|+..  .......+..+|.+++++..+...  ......+..+.....   ..+..++.+|+|+.|....  
T Consensus        75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~---~~~~~~~~vv~N~~~~~~~--  145 (206)
T 4dzz_A           75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQA---YSRKVEARFLITRKIEMAT--  145 (206)
T ss_dssp             TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSC---GGGCCEEEEEECSBCTTEE--
T ss_pred             CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHH---hCCCCcEEEEEeccCCCch--
Confidence            3688999999866  345556677799999998876543  555666655554331   1245677999999995322  


Q ss_pred             cCHHHHHHHHHHhCCcEE
Q psy8700         134 VSAAEGEAEAKMWGCHFM  151 (200)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~  151 (200)
                      .. .+........+.+++
T Consensus       146 ~~-~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          146 ML-NVLKESIKDTGVKAF  162 (206)
T ss_dssp             EE-HHHHHHHHHHTCCBC
T ss_pred             HH-HHHHHHHHHcCCcee
Confidence            11 222333344565554

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.66  E-value=0.00012  Score=57.39  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.0

Q ss_pred             CceEEEEECCCCCCHHHHHHHHh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~   28 (200)
                      +...|+++|.+|+||||++..|.
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45678899999999999988886

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.64  E-value=3.1e-05  Score=53.41  Aligned_cols=21  Identities=29%  Similarity=0.610  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|++|||||||++.|.+
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999986

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.58  E-value=4e-05  Score=53.69  Aligned_cols=22  Identities=36%  Similarity=0.616  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.++|+|++|||||||++.|.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999876

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.52  E-value=5.2e-05  Score=53.11  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -++++|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999873

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.49  E-value=5.4e-05  Score=52.46  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -.|+++|++||||||+++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            46899999999999999999874

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.48  E-value=8.7e-05  Score=52.33  Aligned_cols=25  Identities=32%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .....|+|+|++|||||||++.|.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999998876

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.47  E-value=0.00018  Score=56.18  Aligned_cols=86  Identities=17%  Similarity=0.116  Sum_probs=47.1

Q ss_pred             EEEEEEEeCCCCCCChh-hHh-----hccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          54 ICTLQITDTTGSHQFPA-MQR-----LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      .+.+.++||||...... +..     ......+.+++|+|.....   +.......+....        ...-||+||.|
T Consensus       180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~l--------~i~GVIlTKlD  248 (425)
T 2ffh_A          180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEKV--------GVTGLVLTKLD  248 (425)
T ss_dssp             TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHT--------CCCEEEEESGG
T ss_pred             CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhcC--------CceEEEEeCcC
Confidence            35789999999654321 111     1122578899999976432   2122222222222        13568899999


Q ss_pred             CCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700         128 ETENREVSAAEGEAEAKMWGCHFMETS  154 (200)
Q Consensus       128 l~~~~~~~~~~~~~~~~~~~~~~~~vS  154 (200)
                      ....   .. .........+.|+.++.
T Consensus       249 ~~~~---~g-~alsi~~~~g~PI~flg  271 (425)
T 2ffh_A          249 GDAR---GG-AALSARHVTGKPIYFAG  271 (425)
T ss_dssp             GCSS---CH-HHHHHHHHHCCCEEEEE
T ss_pred             Cccc---HH-HHHHHHHHHCCCEEEEe
Confidence            5321   11 22334556788877665

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.44  E-value=7.6e-05  Score=52.59  Aligned_cols=22  Identities=36%  Similarity=0.448  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -++++|+.|||||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999873

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.44  E-value=8.2e-05  Score=52.01  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      --|+|+||+|||||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            45889999999999999999863

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.43  E-value=8e-05  Score=52.98  Aligned_cols=21  Identities=33%  Similarity=0.760  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.|.+
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            579999999999999999987

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.43  E-value=8.2e-05  Score=53.00  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      --++++||.|||||||++.|.+.
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            45889999999999999999863

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.42  E-value=6.7e-05  Score=51.26  Aligned_cols=20  Identities=35%  Similarity=0.622  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~   28 (200)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.40  E-value=9.2e-05  Score=52.23  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      --|+++||+||||||+++.|...
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            45899999999999999999864

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.38  E-value=0.00011  Score=50.11  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..|+++|++||||||+.+.|.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999876

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.37  E-value=0.00011  Score=50.93  Aligned_cols=21  Identities=33%  Similarity=0.659  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~   30 (200)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.36  E-value=0.00011  Score=51.60  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-|+|+|++||||||+++.|..
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999975

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.35  E-value=0.00016  Score=49.50  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.35  E-value=0.00012  Score=51.38  Aligned_cols=24  Identities=29%  Similarity=0.517  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      -.|+++|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999997743

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.34  E-value=0.00013  Score=49.25  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++++|+.|||||||++.+.+.
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999999874

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.34  E-value=0.00012  Score=50.62  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|++||||||+++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.33  E-value=0.00012  Score=49.73  Aligned_cols=19  Identities=26%  Similarity=0.452  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHH
Q psy8700           9 RVVVFGAGGVGKSSLVLRF   27 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l   27 (200)
                      -|++.|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999999

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.33  E-value=0.00013  Score=49.57  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|++.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.30  E-value=0.00014  Score=50.89  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=20.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .--|+++|++||||||+++.|.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999865

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.30  E-value=0.00024  Score=48.46  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-.|+++|++||||||+.+.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.30  E-value=0.00013  Score=52.54  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            479999999999999999887

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.29  E-value=0.00015  Score=55.39  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      .++++|++|||||||+|.|.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            68999999999999999998744

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.28  E-value=0.00016  Score=50.88  Aligned_cols=24  Identities=17%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ....|+++|+.|||||||++.|.+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998876

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.27  E-value=0.00021  Score=50.88  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999998864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.27  E-value=0.0081  Score=42.18  Aligned_cols=66  Identities=8%  Similarity=-0.037  Sum_probs=46.2

Q ss_pred             EEEEEEEeCCCC-CCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          54 ICTLQITDTTGS-HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        54 ~~~~~~~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      .+.+.++|+|+. ...  .....+..+|.+++++.. +..++..+...+..+....       ..++.+|+|+.|..
T Consensus        67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~-------~~~~~vv~N~~~~~  133 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG-------NNRFRILLTIIPPY  133 (209)
T ss_dssp             GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC-------SSSEEEEECSBCCT
T ss_pred             cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc-------CCCEEEEEEecCCc
Confidence            367899999986 432  344566788998888875 4456666666666665532       25688999999864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.27  E-value=0.00025  Score=49.55  Aligned_cols=26  Identities=23%  Similarity=0.599  Sum_probs=22.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +.....|+|+|++||||||+.+.|..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34557899999999999999998864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.25  E-value=0.00018  Score=52.01  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=20.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~   28 (200)
                      .-.|+++|++||||||+++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999998

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.25  E-value=0.00024  Score=49.88  Aligned_cols=28  Identities=21%  Similarity=0.330  Sum_probs=23.3

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .-.....|+++|++||||||+.+.|...
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3345578999999999999999998763

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.24  E-value=0.00017  Score=50.14  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            589999999999999999876

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.23  E-value=0.00021  Score=50.52  Aligned_cols=21  Identities=24%  Similarity=0.555  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999854

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.22  E-value=0.0002  Score=51.75  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++++|+.|||||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999873

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.21  E-value=0.00023  Score=49.81  Aligned_cols=23  Identities=35%  Similarity=0.449  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|+|+|++||||||+.+.|..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999999865

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.21  E-value=0.00016  Score=51.62  Aligned_cols=21  Identities=38%  Similarity=0.506  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999877

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.20  E-value=0.00022  Score=48.75  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-|++.|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999876

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.20  E-value=0.00023  Score=50.33  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999854

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.20  E-value=0.00024  Score=49.65  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.19  E-value=0.00034  Score=48.24  Aligned_cols=25  Identities=20%  Similarity=0.405  Sum_probs=21.4

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      ....|+++|++||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999988654

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.19  E-value=0.00031  Score=50.81  Aligned_cols=25  Identities=36%  Similarity=0.515  Sum_probs=21.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .....|+++|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.19  E-value=0.0002  Score=52.39  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        34 ~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999987

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.19  E-value=0.0002  Score=52.76  Aligned_cols=21  Identities=38%  Similarity=0.646  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999987

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.18  E-value=0.00022  Score=49.95  Aligned_cols=22  Identities=32%  Similarity=0.436  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+|+++|++||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.18  E-value=0.00022  Score=50.92  Aligned_cols=25  Identities=32%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .....|+|.|++||||||+.+.|..
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998863

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.18  E-value=0.00024  Score=48.70  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=20.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-++++|++|||||||+++|..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHH
Confidence            45689999999999999999986

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.18  E-value=0.00026  Score=49.64  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.18  E-value=0.00022  Score=50.60  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999987

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.17  E-value=0.00019  Score=49.25  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.++++|++|+|||||++.+.+
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.17  E-value=0.00022  Score=52.14  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.++++|+.|||||||++.+.+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            3689999999999999999876

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.17  E-value=0.00024  Score=51.22  Aligned_cols=21  Identities=43%  Similarity=0.559  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            579999999999999999977

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.17  E-value=0.00024  Score=53.06  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      =.++|+|++|||||||++.|.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            3689999999999999999876

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.17  E-value=0.00038  Score=52.44  Aligned_cols=26  Identities=23%  Similarity=0.235  Sum_probs=22.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ....+-|+++|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988854

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.16  E-value=0.00038  Score=51.72  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=22.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ......|+|.|++|||||||++.|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45668899999999999999988754

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.16  E-value=0.00027  Score=49.80  Aligned_cols=21  Identities=33%  Similarity=0.556  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|+++|+|||||+|...+|..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.16  E-value=0.00028  Score=49.23  Aligned_cols=21  Identities=33%  Similarity=0.703  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|++.|++||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999875

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.15  E-value=0.00022  Score=52.31  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        39 ~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999987

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.14  E-value=0.00022  Score=50.34  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++++|+.|||||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.14  E-value=0.00037  Score=51.70  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=21.6

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ....-|++.|++||||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.14  E-value=0.00027  Score=51.31  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            579999999999999999977

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.14  E-value=0.00033  Score=49.72  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.14  E-value=0.00024  Score=51.87  Aligned_cols=21  Identities=29%  Similarity=0.514  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        35 ~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999987

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.14  E-value=0.00027  Score=51.10  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            579999999999999999987

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.13  E-value=0.00025  Score=50.80  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999987

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.13  E-value=0.00031  Score=48.56  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-|++.|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999865

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.13  E-value=0.00033  Score=48.20  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.13  E-value=0.00024  Score=49.10  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.13  E-value=0.00025  Score=51.89  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        52 i~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHc
Confidence            478999999999999999987

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.13  E-value=0.00037  Score=48.71  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .--|+++|++||||||+.+.|.+
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998865

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.13  E-value=0.00015  Score=51.88  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=14.9

Q ss_pred             EEEEECCCCCCHHHHHHHHh-hC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFV-KG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~-~~   30 (200)
                      -++++|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998 53

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.12  E-value=0.00024  Score=53.13  Aligned_cols=23  Identities=39%  Similarity=0.459  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      .++++|++|||||||+|.+.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            57899999999999999998743

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.12  E-value=0.00038  Score=50.34  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|+++|+.|||||||++.|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998876

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.12  E-value=0.0004  Score=52.15  Aligned_cols=25  Identities=24%  Similarity=0.236  Sum_probs=21.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ....-|+|+|++|||||||++.|.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            4556899999999999999999876

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.11  E-value=0.00044  Score=48.32  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=21.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .....|+|.|++||||||+.+.|..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.11  E-value=0.00043  Score=51.79  Aligned_cols=84  Identities=14%  Similarity=0.038  Sum_probs=47.0

Q ss_pred             EEEEEeCCCCCCChh------------hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEe
Q psy8700          56 TLQITDTTGSHQFPA------------MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG  123 (200)
Q Consensus        56 ~~~~~D~~G~~~~~~------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  123 (200)
                      .+.+.||+|......            +.+......+.+++++|........   .....+....+        ..+|++
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~~~--------~t~iiv  254 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEAVG--------LTGVIV  254 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHHHC--------CSEEEE
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHHcC--------CcEEEE
Confidence            467899999643221            1122344567788899977654322   22233333332        358899


Q ss_pred             eCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700         124 NKCDETENREVSAAEGEAEAKMWGCHFMETS  154 (200)
Q Consensus       124 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  154 (200)
                      ||.|....  ..  .........+.|+.+++
T Consensus       255 Th~d~~a~--gg--~~l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          255 TKLDGTAK--GG--VLIPIVRTLKVPIKFVG  281 (304)
T ss_dssp             ECTTSSCC--CT--THHHHHHHHCCCEEEEE
T ss_pred             ECCccccc--cc--HHHHHHHHHCCCeEEEe
Confidence            99985422  11  22344556788877776

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.11  E-value=0.00035  Score=48.18  Aligned_cols=22  Identities=32%  Similarity=0.329  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.11  E-value=0.00027  Score=51.52  Aligned_cols=21  Identities=19%  Similarity=0.319  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        43 i~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999999987

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.11  E-value=0.00027  Score=51.03  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~G   54 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999987

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.11  E-value=7.7e-05  Score=55.84  Aligned_cols=23  Identities=39%  Similarity=0.446  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -.++++|++|||||||+|.|.+.
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CEEEEECCCCCCHHHHHHHhccc
Confidence            36899999999999999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.11  E-value=0.00029  Score=51.19  Aligned_cols=22  Identities=27%  Similarity=0.370  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++++|+.|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999884

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.10  E-value=0.00028  Score=51.21  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        28 ~~~liG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999999987

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.10  E-value=0.00039  Score=48.09  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|++.|++||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.09  E-value=0.00042  Score=48.63  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|++.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.08  E-value=0.00037  Score=47.94  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.08  E-value=0.00032  Score=51.48  Aligned_cols=22  Identities=27%  Similarity=0.438  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999884

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.08  E-value=0.00033  Score=51.24  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            579999999999999999987

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.07  E-value=0.00031  Score=52.50  Aligned_cols=21  Identities=38%  Similarity=0.730  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~   28 (200)
                      -.++++|++|||||||+|.|.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            357999999999999999998

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.06  E-value=0.00046  Score=47.60  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.8

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ....|++.|++||||||+.+.|..
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.06  E-value=0.00031  Score=51.67  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~G   67 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQN   67 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            579999999999999999987

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.06  E-value=0.0008  Score=52.83  Aligned_cols=62  Identities=21%  Similarity=0.136  Sum_probs=37.6

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh------------------CCCC--CCcCCCcccceeEE----EE-eCCcEEEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK------------------GTFR--ESYIPTIEDTYRQV----IS-CNKNICTLQIT   60 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~------------------~~~~--~~~~~~~~~~~~~~----~~-~~~~~~~~~~~   60 (200)
                      +-.=|+|+|+.++|||+|+|.|+.                  ..|.  ....+.+.+.+-+.    +. .++..+.+.+.
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll  145 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM  145 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred             ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence            345667999999999999996641                  1221  12222233333221    11 15667899999


Q ss_pred             eCCCCCC
Q psy8700          61 DTTGSHQ   67 (200)
Q Consensus        61 D~~G~~~   67 (200)
                      ||.|...
T Consensus       146 DTEG~~d  152 (457)
T 4ido_A          146 DTQGTFD  152 (457)
T ss_dssp             EECCBTC
T ss_pred             eccCCCC
Confidence            9999543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.05  E-value=0.00036  Score=50.71  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=22.0

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ......|+++|++||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999998864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.05  E-value=0.00036  Score=51.53  Aligned_cols=21  Identities=24%  Similarity=0.559  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        49 ~~~liG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            579999999999999999987

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.05  E-value=0.00033  Score=51.02  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~G   53 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLG   53 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999987

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.05  E-value=0.00033  Score=49.77  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=20.8

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ....|+|+|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.04  E-value=0.00046  Score=51.71  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=21.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .....|+++|++|||||||++.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4456899999999999999999876

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.04  E-value=0.00031  Score=49.97  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|++|||||||++.+.+
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.04  E-value=0.0005  Score=47.97  Aligned_cols=24  Identities=17%  Similarity=0.284  Sum_probs=21.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      ...|++.|++||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999999763

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.04  E-value=0.00035  Score=49.35  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.03  E-value=0.00033  Score=52.39  Aligned_cols=21  Identities=24%  Similarity=0.574  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        82 ~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTT
T ss_pred             EEEEECCCCchHHHHHHHHHc
Confidence            689999999999999998876

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.03  E-value=0.00038  Score=47.52  Aligned_cols=21  Identities=38%  Similarity=0.547  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.02  E-value=0.00036  Score=51.21  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        35 ~~~liG~nGsGKSTLl~~i~G   55 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999999877

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.02  E-value=0.00018  Score=49.23  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|++|||||||++.|.+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999877

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.02  E-value=0.00034  Score=53.73  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -+++++|+.|||||||++.|.+
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~g  192 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAA  192 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999987

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.01  E-value=0.0004  Score=51.18  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      ++++|++|+|||||++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999976

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.00  E-value=0.00034  Score=46.66  Aligned_cols=21  Identities=38%  Similarity=0.640  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|++|+|||||++.+.+
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999877

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.99  E-value=0.00059  Score=47.74  Aligned_cols=25  Identities=16%  Similarity=0.242  Sum_probs=21.4

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .....|+++|++||||||+++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.99  E-value=0.00052  Score=47.84  Aligned_cols=27  Identities=19%  Similarity=0.169  Sum_probs=22.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      +.....|+++|++||||||+.+.|...
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            345678999999999999999998764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.99  E-value=0.00052  Score=46.36  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.99  E-value=0.00045  Score=50.57  Aligned_cols=21  Identities=29%  Similarity=0.665  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~G   52 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISG   52 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            579999999999999999987

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.99  E-value=0.00058  Score=46.49  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...++++|++|||||||+.+|..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999875

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.98  E-value=0.00052  Score=47.55  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|++.|++||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.97  E-value=0.00053  Score=48.17  Aligned_cols=24  Identities=25%  Similarity=0.210  Sum_probs=21.0

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ....|++.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            356799999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.96  E-value=0.00063  Score=48.75  Aligned_cols=24  Identities=29%  Similarity=0.552  Sum_probs=20.9

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ....|+|+|++||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999998864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.96  E-value=0.0006  Score=46.69  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|+++|++||||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34699999999999999999864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.96  E-value=0.00037  Score=47.76  Aligned_cols=23  Identities=22%  Similarity=0.236  Sum_probs=16.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.96  E-value=0.00045  Score=52.83  Aligned_cols=21  Identities=33%  Similarity=0.504  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999999876

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.95  E-value=0.0005  Score=50.01  Aligned_cols=21  Identities=14%  Similarity=0.480  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -|+++|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.94  E-value=0.00053  Score=48.68  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=19.0

Q ss_pred             CceE-EEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYR-VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~k-i~~~G~~~~GKSsli~~l~~   29 (200)
                      ...| |+++|+|||||+|...+|..
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3445 45789999999999988864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.92  E-value=0.00062  Score=48.48  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.91  E-value=0.00057  Score=47.23  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.91  E-value=0.0007  Score=49.12  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=21.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..+.|+|.|++||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998865

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.90  E-value=0.00056  Score=52.35  Aligned_cols=21  Identities=38%  Similarity=0.409  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        56 i~~IiGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEcCCCchHHHHHHHHhc
Confidence            478999999999999999887

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.90  E-value=0.00058  Score=49.50  Aligned_cols=20  Identities=35%  Similarity=0.566  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      ++++|++|+|||||++.+.+
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999986

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.89  E-value=0.00066  Score=47.74  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|++.|++||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.89  E-value=0.0009  Score=46.07  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...-|+++|.+||||||+.+.|..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999998865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.89  E-value=0.00048  Score=52.63  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        32 ~~~llGpsGsGKSTLLr~iaG   52 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAG   52 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCchHHHHHHHHhc
Confidence            468999999999999999987

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.88  E-value=0.00076  Score=49.84  Aligned_cols=25  Identities=36%  Similarity=0.462  Sum_probs=21.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .....|+|.|++||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4467899999999999999998863

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.87  E-value=0.00068  Score=45.95  Aligned_cols=21  Identities=19%  Similarity=0.450  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|++.|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.87  E-value=0.00066  Score=47.11  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|++.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.87  E-value=0.0006  Score=52.04  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -++++|+.|||||||++.+.+-
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999873

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.86  E-value=0.00054  Score=48.52  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998854

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.86  E-value=0.00063  Score=50.85  Aligned_cols=23  Identities=17%  Similarity=0.391  Sum_probs=20.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .--++++|+.||||||+++.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999999864

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.86  E-value=0.00062  Score=52.40  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        31 ~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEcCCCchHHHHHHHHHc
Confidence            468999999999999999987

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.86  E-value=0.00085  Score=47.44  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.8

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999865

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.85  E-value=0.00063  Score=52.04  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEcCCCchHHHHHHHHHC
Confidence            478999999999999999987

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.85  E-value=0.00057  Score=50.76  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~G   86 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMG   86 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            579999999999999999877

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.85  E-value=0.00085  Score=48.95  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-|++.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.85  E-value=0.00022  Score=50.19  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999865

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.85  E-value=0.0009  Score=46.57  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=22.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +-+.+.|+++|.+||||||+.+.|..
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHH
Confidence            45678899999999999999998865

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.85  E-value=0.00066  Score=52.00  Aligned_cols=21  Identities=29%  Similarity=0.545  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaG   51 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAG   51 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCchHHHHHHHHhc
Confidence            468999999999999999987

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.84  E-value=0.00087  Score=48.67  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~   28 (200)
                      ..|+++|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999987

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.84  E-value=0.00071  Score=46.45  Aligned_cols=21  Identities=38%  Similarity=0.608  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988854

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.84  E-value=0.00063  Score=52.40  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.++++|++||||||+++.+.+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999876

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.80  E-value=0.00074  Score=51.92  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        39 ~~~llGpnGsGKSTLLr~iaG   59 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAG   59 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            468999999999999999987

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.80  E-value=0.00073  Score=51.97  Aligned_cols=22  Identities=18%  Similarity=0.368  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -++++|+.|||||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCcHHHHHHHHHHcC
Confidence            3789999999999999999873

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.79  E-value=0.00082  Score=45.99  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999999988763

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.79  E-value=0.0011  Score=45.31  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|+++|.+||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998865

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.78  E-value=0.00064  Score=51.48  Aligned_cols=21  Identities=29%  Similarity=0.610  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g  193 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIME  193 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999987

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.77  E-value=0.0008  Score=50.99  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|++|+|||||++.+.+
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999876

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.77  E-value=0.00066  Score=52.07  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.++++|+.|||||||++.+.+
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~  197 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQ  197 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999987

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.77  E-value=0.00078  Score=52.64  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++|+|+.|||||||++.+++
T Consensus       169 ii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999987

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.76  E-value=0.0016  Score=46.65  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=21.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...-|++.|++||||||+++.|..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            456799999999999999999875

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.75  E-value=0.001  Score=47.78  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=20.6

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..+.|++.|++||||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998863

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.75  E-value=0.00089  Score=47.55  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|++|+|||||++.+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999875

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.74  E-value=0.001  Score=47.52  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=21.6

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      ...-|+|.|+.||||||+++.|.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            3457999999999999999998774

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.74  E-value=0.0009  Score=49.24  Aligned_cols=20  Identities=35%  Similarity=0.566  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      ++++|++|+|||||++.+.+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHH
Confidence            89999999999999999986

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.72  E-value=0.0012  Score=44.64  Aligned_cols=24  Identities=33%  Similarity=0.351  Sum_probs=19.6

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +.-.|++.|.+||||||+.+.|..
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998854

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.71  E-value=0.00061  Score=51.91  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        28 ~~~llGpnGsGKSTLLr~iaG   48 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAG   48 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCccHHHHHHHHHc
Confidence            478999999999999999987

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.66  E-value=0.0011  Score=46.60  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=19.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-|+++|++||||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.66  E-value=0.00089  Score=53.68  Aligned_cols=21  Identities=19%  Similarity=0.357  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|++||||||+++.+++
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~  282 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMM  282 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999987

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.66  E-value=0.0011  Score=50.74  Aligned_cols=23  Identities=17%  Similarity=0.391  Sum_probs=20.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .--++++|+.||||||+++.|.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34689999999999999999864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.63  E-value=0.0011  Score=48.13  Aligned_cols=22  Identities=18%  Similarity=0.298  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.|+++|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998854

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.63  E-value=0.00097  Score=51.58  Aligned_cols=21  Identities=43%  Similarity=0.749  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            479999999999999999876

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.62  E-value=0.00084  Score=50.55  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      --++++|+.|||||||++.+.+.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            35789999999999999999864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.61  E-value=0.0013  Score=47.80  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.+++.|++|+|||++++.+.+
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            3599999999999999999876

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.60  E-value=0.00059  Score=52.11  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        33 ~~~llGpnGsGKSTLLr~iaG   53 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAG   53 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999999987

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.60  E-value=0.0012  Score=52.41  Aligned_cols=23  Identities=22%  Similarity=0.635  Sum_probs=20.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .--|+|+|+.|||||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            34689999999999999999864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.59  E-value=0.0013  Score=46.25  Aligned_cols=21  Identities=29%  Similarity=0.351  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999987

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.59  E-value=0.0017  Score=48.30  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.58  E-value=0.0011  Score=49.16  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -++++|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3789999999999999998763

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.57  E-value=0.0019  Score=48.13  Aligned_cols=26  Identities=19%  Similarity=0.446  Sum_probs=21.3

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ......+++.|++|+|||++++.+..
T Consensus        64 ~~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           64 ETPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHH
Confidence            34456799999999999999987654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.56  E-value=0.0019  Score=47.98  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=20.3

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+.-+++.|+||+|||+|++.+..
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345678889999999999999875

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.56  E-value=0.0015  Score=46.84  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.56  E-value=0.0021  Score=47.99  Aligned_cols=27  Identities=22%  Similarity=0.391  Sum_probs=21.7

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ......-|+|+||+|||||+|...|..
T Consensus         6 ~~~~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            6 KASLPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             -CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCCcEEEEECCCccCHHHHHHHHHH
Confidence            344455688999999999999999865

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.55  E-value=0.0015  Score=46.58  Aligned_cols=24  Identities=13%  Similarity=0.232  Sum_probs=20.8

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-.+++.|++|+|||+|++.+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999998865

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.53  E-value=0.0011  Score=45.15  Aligned_cols=24  Identities=25%  Similarity=0.458  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            446899999999999999988653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.53  E-value=0.002  Score=46.19  Aligned_cols=25  Identities=20%  Similarity=0.321  Sum_probs=21.5

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .....|+++|++||||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999998864

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.53  E-value=0.0014  Score=50.40  Aligned_cols=22  Identities=18%  Similarity=0.214  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      --++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999876

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.53  E-value=0.0018  Score=46.27  Aligned_cols=26  Identities=23%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +-+..+++++|+|||||||+..+|..
T Consensus         5 ~~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            5 HHHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ----CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccccceeeECCCCCCHHHHHHHHHH
Confidence            44568999999999999999998854

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.51  E-value=0.0023  Score=51.66  Aligned_cols=29  Identities=28%  Similarity=0.480  Sum_probs=22.9

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      |.....=-++++|+.|||||||++.+.+-
T Consensus        20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           20 PTPKNNTILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             CCCCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            33334445799999999999999999873

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.50  E-value=0.0017  Score=45.25  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.+++.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998876

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.48  E-value=0.0016  Score=44.60  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.+|+|+.|||||||+.++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999854

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.47  E-value=0.0016  Score=49.61  Aligned_cols=23  Identities=39%  Similarity=0.665  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -+++++|+.|+|||||++.+.+.
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999999884

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.47  E-value=0.0013  Score=46.08  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+++.||||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888865

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.46  E-value=0.0013  Score=52.06  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -.++++|+.|||||||++.|.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            36899999999999999998763

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.37  E-value=0.0026  Score=51.90  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTR  391 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999999877

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.37  E-value=0.0023  Score=52.21  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g  391 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITR  391 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            689999999999999999877

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.37  E-value=0.0021  Score=47.65  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-.+++.|++|+|||++++.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            45799999999999999999876

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.35  E-value=0.0024  Score=42.16  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=20.8

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      ...|++.|++|+|||++++.+...
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHh
Confidence            356899999999999999998764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.35  E-value=0.0021  Score=51.01  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999865

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.34  E-value=0.0025  Score=52.23  Aligned_cols=22  Identities=27%  Similarity=0.575  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      =.++++|+.|||||||++.+.+
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            3689999999999999998876

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.33  E-value=0.0024  Score=44.53  Aligned_cols=21  Identities=33%  Similarity=0.395  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|++.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.32  E-value=0.0016  Score=48.30  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=17.5

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..+-|++.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999988754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.30  E-value=0.0029  Score=44.10  Aligned_cols=24  Identities=38%  Similarity=0.584  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      ..|+++|++|+|||+|...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.30  E-value=0.0025  Score=45.20  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -+++.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.29  E-value=0.0026  Score=44.54  Aligned_cols=20  Identities=20%  Similarity=0.517  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      +++.|++|+|||++++.+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.29  E-value=0.0026  Score=42.32  Aligned_cols=19  Identities=37%  Similarity=0.602  Sum_probs=17.2

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy8700          10 VVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~   28 (200)
                      .+++|+.|+||||++.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4899999999999999975

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.29  E-value=0.0026  Score=51.43  Aligned_cols=22  Identities=32%  Similarity=0.401  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++++|+.|||||||++.+.+-
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999999874

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.29  E-value=0.0024  Score=47.56  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .--+++.|++|+|||++++.+..
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHH
Confidence            34589999999999999999876

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.27  E-value=0.0033  Score=46.25  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-.+++.|++|+|||++++.+..
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            44699999999999999999976

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.27  E-value=0.0036  Score=48.93  Aligned_cols=24  Identities=33%  Similarity=0.448  Sum_probs=20.7

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...-|+++|++||||||+.++|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999999875

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.26  E-value=0.0036  Score=45.32  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .--+++.|++|+|||++++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999999876

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.25  E-value=0.0025  Score=50.16  Aligned_cols=23  Identities=35%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      =+++++|+.|||||||++.+.+.
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc
Confidence            36899999999999999999873

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.24  E-value=0.0023  Score=47.05  Aligned_cols=21  Identities=33%  Similarity=0.518  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.23  E-value=0.0035  Score=47.45  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-|+|.|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5689999999999999998864

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.23  E-value=0.0021  Score=52.43  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            689999999999999998876

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.21  E-value=0.003  Score=47.27  Aligned_cols=86  Identities=20%  Similarity=0.131  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCCCCChhhH-------hhcc-----ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700          55 CTLQITDTTGSHQFPAMQ-------RLSI-----SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV  122 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~-------~~~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  122 (200)
                      +.+.++||||........       ...+     ...+.+++|+|.....  +.+... ..+.+..        ...-+|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a-~~~~~~~--------~i~gvV  255 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQA-KIFKEAV--------NVTGII  255 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHH-HHHHHHS--------CCCEEE
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHH-HHHHhcC--------CCCEEE
Confidence            468999999964332211       1111     2478889999886332  222221 2222222        234678


Q ss_pred             eeCCCCCcccccCHHHHHHHHHHhCCcEEEecc
Q psy8700         123 GNKCDETENREVSAAEGEAEAKMWGCHFMETSA  155 (200)
Q Consensus       123 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa  155 (200)
                      +||.|...  ..-  .........+.|+.+++.
T Consensus       256 lTk~D~~~--~gG--~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          256 LTKLDGTA--KGG--ITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             EECGGGCS--CTT--HHHHHHHHHCCCEEEEEC
T ss_pred             EeCCCCcc--chH--HHHHHHHHHCCCEEEEeC
Confidence            89999532  222  245556677888877764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.21  E-value=0.0025  Score=47.43  Aligned_cols=22  Identities=27%  Similarity=0.638  Sum_probs=19.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~   28 (200)
                      .-.|+++|++|+||||++..|.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999999875

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.0029  Score=49.49  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      --|++.||||+|||+|++++.+
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4599999999999999999976

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.18  E-value=0.0029  Score=51.84  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++++|+.|||||||++.+.+-
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5899999999999999999873

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.18  E-value=0.0043  Score=46.68  Aligned_cols=23  Identities=17%  Similarity=0.426  Sum_probs=20.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|+++|++|||||||...|..
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.16  E-value=0.003  Score=47.43  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      --+++.|++|+|||+|++.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4589999999999999999876

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.16  E-value=0.005  Score=45.78  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.+++.|++|+|||++++.+..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4699999999999999998875

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.15  E-value=0.0048  Score=45.11  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=21.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .....+++.|++|+|||++++.+..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            4456799999999999999999876

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.14  E-value=0.0051  Score=46.81  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=20.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ....|+++|++|+||||+.+.|..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            345799999999999999987643

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.14  E-value=0.005  Score=43.83  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHH
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRF   27 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l   27 (200)
                      ++...++|.+.|++|+||||++-.+
T Consensus         2 ~~~g~l~I~~~~kgGvGKTt~a~~l   26 (228)
T 2r8r_A            2 NARGRLKVFLGAAPGVGKTYAMLQA   26 (228)
T ss_dssp             -CCCCEEEEEESSTTSSHHHHHHHH
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHH
Confidence            4567899999999999999996655

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.13  E-value=0.0043  Score=48.62  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.8

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +-.|++.||||+|||+|++++.+
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHH
Confidence            45799999999999999999976

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.11  E-value=0.0031  Score=51.50  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999998876

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.07  E-value=0.0043  Score=47.08  Aligned_cols=20  Identities=20%  Similarity=0.680  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998876

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.04  E-value=0.0035  Score=44.91  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -+++.|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999877754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.04  E-value=0.003  Score=46.07  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=21.0

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +...|+|.|.+||||||+++.|..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.04  E-value=0.0038  Score=51.14  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++++|+.|||||||++.+.+-
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5799999999999999999873

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.04  E-value=0.0038  Score=47.00  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .--|++.|+||+|||+|++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHH
Confidence            35699999999999999999976

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.04  E-value=0.0038  Score=47.29  Aligned_cols=21  Identities=24%  Similarity=0.654  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~   30 (200)
                      +++.|++|+||||+++.+...
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998763

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.0039  Score=48.28  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.5

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +--|++.||||+|||+|++++.+
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHH
Confidence            34689999999999999999976

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.03  E-value=0.0036  Score=50.56  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++++|+.|||||||++.+.+-
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999873

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.02  E-value=0.0039  Score=42.78  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~   30 (200)
                      |+|+|.++||||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.01  E-value=0.0043  Score=50.12  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++++|+.|||||||++.+.+-
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999999874

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.01  E-value=0.0053  Score=48.14  Aligned_cols=23  Identities=26%  Similarity=0.445  Sum_probs=20.8

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +--|++.||||+|||+|++++.+
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999999976

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.01  E-value=0.0048  Score=44.30  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-|++.|.+||||||+++.|..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999999875

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.01  E-value=0.0042  Score=46.07  Aligned_cols=23  Identities=30%  Similarity=0.624  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-.+++.|++|+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            44689999999999999999865

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.99  E-value=0.0048  Score=42.02  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      .-|++.|++|+||||+.-.|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999998754

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.98  E-value=0.0047  Score=43.67  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=19.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-|++.|++||||||+++.|..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999998854

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.96  E-value=0.0044  Score=47.55  Aligned_cols=19  Identities=47%  Similarity=0.559  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy8700          10 VVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~   28 (200)
                      .+++|+.|||||||++.++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999999986

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.95  E-value=0.0047  Score=50.59  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++++|+.|||||||++.+.+-
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999873

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.93  E-value=0.004  Score=47.60  Aligned_cols=23  Identities=22%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .--+++.|++|+|||||++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999876

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.92  E-value=0.0047  Score=47.34  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998763

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.91  E-value=0.0051  Score=43.35  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=19.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...|+++|++||||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988754

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=95.89  E-value=0.0085  Score=42.19  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=22.9

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +-+.+-|+++|..||||||+.+.|..
T Consensus         6 ~~~~~~iglTGgigsGKStv~~~l~~   31 (210)
T 4i1u_A            6 HHHMYAIGLTGGIGSGKTTVADLFAA   31 (210)
T ss_dssp             CCSCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHH
Confidence            45679999999999999999998865

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.89  E-value=0.0042  Score=47.35  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -+.++|++|+|||||+..+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999874

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.88  E-value=0.0039  Score=44.50  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=17.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-|+|.|++||||||+++.|..
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999998864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.86  E-value=0.0058  Score=45.74  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-|+|+||+|||||||...|..
T Consensus         4 ~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCcCCHHHHHHHHHH
Confidence            3578999999999999999975

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.85  E-value=0.0051  Score=50.39  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .++++|+.|||||||++.+.+-
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl  401 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGA  401 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            3799999999999999999874

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.85  E-value=0.0071  Score=45.46  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-.+++.|+||+|||++++.+..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45699999999999999999876

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.84  E-value=0.0024  Score=42.00  Aligned_cols=22  Identities=23%  Similarity=0.243  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..|++.|++|+|||++++.+..
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCC
T ss_pred             CcEEEECCCCccHHHHHHHHHH
Confidence            4589999999999999988755

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.0054  Score=47.87  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .--|++.||||+|||+|++++.+
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHH
T ss_pred             CCCCceECCCCchHHHHHHHHHH
Confidence            35699999999999999999976

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.80  E-value=0.0056  Score=46.34  Aligned_cols=20  Identities=35%  Similarity=0.740  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      +++.|++|+|||++++.+..
T Consensus        61 ~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998875

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.80  E-value=0.0024  Score=46.55  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -+++.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999999875

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.73  E-value=0.0059  Score=49.40  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=19.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .--++++|++|+|||||++.+.+
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998865

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.72  E-value=0.0063  Score=46.48  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.|++.|++|+|||+|++.+..
T Consensus        85 ~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999999876

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.72  E-value=0.0051  Score=54.91  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      =+|+++|+.|||||||++.|.+
T Consensus      1106 e~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1106 QTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             CEEEEECSTTSSTTSHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            3799999999999999998876

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.71  E-value=0.0066  Score=45.43  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998865

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.0055  Score=48.24  Aligned_cols=23  Identities=17%  Similarity=0.377  Sum_probs=20.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .--|++.||||+|||+|++++.+
T Consensus       243 prGILLyGPPGTGKTlLAkAiA~  265 (467)
T 4b4t_H          243 PKGILLYGPPGTGKTLCARAVAN  265 (467)
T ss_dssp             CSEEEECSCTTSSHHHHHHHHHH
T ss_pred             CCceEeeCCCCCcHHHHHHHHHh
Confidence            45799999999999999999976

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.68  E-value=0.0057  Score=46.68  Aligned_cols=22  Identities=23%  Similarity=0.536  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      --+++.|+||+|||++++.+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.68  E-value=0.01  Score=44.91  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-|+|+|++|||||||...|..
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999875

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.68  E-value=0.0055  Score=46.85  Aligned_cols=24  Identities=17%  Similarity=0.455  Sum_probs=20.7

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-.+++.|++|+|||++++.+..
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            344789999999999999999875

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.67  E-value=0.0064  Score=48.59  Aligned_cols=20  Identities=35%  Similarity=0.566  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      ++++|++|+|||+|++.+.+
T Consensus        67 vLL~GppGtGKTtLaraIa~   86 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAG   86 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999876

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.67  E-value=0.0062  Score=43.76  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=19.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-|++.|++||||||+++.|..
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-42
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-41
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-39
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-37
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-37
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-37
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	3e-37
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-36
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-35
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-35
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	6e-35
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-34
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-34
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-34
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-34
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	6e-34
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	9e-34
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-33
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-32
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-31
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-31
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	7e-31
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-30
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-30
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-30
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	9e-30
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	3e-29
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	5e-29
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-28
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	9e-28
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	4e-27
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	5e-27
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	5e-27
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	6e-27
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	7e-26
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-25
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-25
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-25
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-25
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-24
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-24
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-24
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-24
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-22
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	6e-21
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	9e-21
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-20
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-19
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-18
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	6e-16
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	5e-15
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	5e-15
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	6e-13
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-12
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	6e-11
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	7e-11
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-10
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	8e-09
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	8e-07
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-06
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	1e-06
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	1e-06
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	2e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	4e-06
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	2e-05
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	2e-04
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	3e-04
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	3e-04
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	4e-04
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	5e-04

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  137 bits (346), Expect = 4e-42
 Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 11/177 (6%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G  GVGK+ ++ RF +  F  ++I TI   ++ + I  +     LQI DT G  
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F  +           +LVY  T+ +S + +R     I E     +  A +  M++GNKC
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-----HASADVEKMILGNKC 121

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEK 183
           D  + R+VS   GE  A  +G  FMETSAK N NV+  F  L      R+I  +++K
Sbjct: 122 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA-----RDIKAKMDK 173

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 2e-41
 Identities = 140/174 (80%), Positives = 151/174 (86%), Gaps = 3/174 (1%)

Query: 6   NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGS 65
           NDYRV VFGAGGVGKSSLVLRFVKGTFRESYIPT+EDTYRQVISC+K+ICTLQITDTTGS
Sbjct: 1   NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 60

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
           HQFPAMQRLSISKGHAFILVYS TSRQSLEEL+PI+E I E KG       IPIMLVGNK
Sbjct: 61  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES---IPIMLVGNK 117

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISL 179
           CDE+ +REV ++E EA A+ W C FMETSAK NHNVKELF ELLNLEK R +SL
Sbjct: 118 CDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSL 171

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 2e-39
 Identities = 80/163 (49%), Positives = 110/163 (67%), Gaps = 4/163 (2%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y+VVV G+GGVGKS+L ++FV GTF E Y PTIED YR+ I  + +   L+I DT G+ 
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF +M+ L I  G  FILVYS  ++QS ++++P+ + I   K        +P++LVGNK 
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK----VPVILVGNKV 118

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    REVS++EG A A+ WGC FMETSAK+   V ELFAE++
Sbjct: 119 DLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 1e-37
 Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 12/181 (6%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISCNKNICTLQITDTTGSH 66
           ++VV+ G  GVGKS+L+ RF +  F      TI   +    I  +      QI DT G  
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++  +           +LVY      + E +    + +R+        ++I IMLVGNK 
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-----SNIVIMLVGNKS 119

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKGQ 186
           D    R V   E  A A+     F+ETSA  + NV+E F  +L       I  ++  + Q
Sbjct: 120 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL-----TEI-YRIVSQKQ 173

Query: 187 L 187
           +
Sbjct: 174 I 174

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  125 bits (315), Expect = 2e-37
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 7/169 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
            ++++ G  GVGKS L++RFV+  F  S+I TI   ++ + +  N     LQI DT G  
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F  +           ILVY  T  ++   ++  ++ + E            ++LVGNK 
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND-----EAQLLLVGNKS 117

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
           D    R V+A +GEA AK  G  F+E+SAK + NV E+F  L  L + +
Sbjct: 118 DME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  126 bits (316), Expect = 3e-37
 Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 11/193 (5%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G  GVGKS L+LRF   T+   YI TI   ++ + +  +     LQI DT G  
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F  +        H  I+VY  T ++S   ++   + I           ++  +LVGNKC
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS-----TVLKLLVGNKC 121

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKGQ 186
           D  + R V     +  A      F+ETSA  + NV++ F  +      R I   + ++  
Sbjct: 122 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA-----RQIKESMSQQNL 176

Query: 187 LKGTRKLKEKCSV 199
            + T+K ++K +V
Sbjct: 177 NETTQKKEDKGNV 189

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (313), Expect = 3e-37
 Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 6/163 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSH 66
           ++ ++ G  GVGKS L+ +F +  F      TI      ++I  +     LQI DT G  
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F A+ R         ++VY  T R +   L       R             I+L+GNK 
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT-----VIILIGNKA 119

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    R+V+  E +  A+  G  F+E SAKT  NV++ F E  
Sbjct: 120 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 162

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  122 bits (306), Expect = 4e-36
 Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 4/168 (2%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           ++V++ G+GGVGKS+L L+F+   F E Y PT  D+YR+ +  +     + I DT G   
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           + A++      G  F+ V+S T  +S        E I   K   N    +P +LVGNK D
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN----VPFLLVGNKSD 120

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
             + R+VS  E +  A  W  +++ETSAKT  NV ++F +L+   + R
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 1e-35
 Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 6/162 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSH 66
           +++V+ G  GVGK+ LV RF +G F      TI  D   + +  N     LQI DT G  
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++ +      +A IL Y  T  +S   L      I +          +  +LVGNK 
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN-----KVITVLVGNKI 120

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           D  E REVS    E  ++    +++ETSAK + NV++LF +L
Sbjct: 121 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 162

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 1e-35
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 6/163 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGSH 66
           ++ ++ G  GVGKS L+L+F    F+  +  TI  +   ++++ +     LQI DT G  
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
            F ++ R         +LVY  T R++   L    E  R+        +++ IML+GNK 
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-----SNMVIMLIGNKS 118

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D    R+V   EGEA A+  G  FMETSAKT  NV+E F    
Sbjct: 119 DLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA 161

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 6e-35
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYR-QVISCNKNICTLQITDTTGS 65
           ++V++ G  GVGK+ L++RF  G F   ++I T+   +R +V+  +     LQ+ DT G 
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +F ++        HA +L+Y  T++ S + ++     I E          + +ML+GNK
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH-----DVALMLLGNK 121

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
            D    R V   +GE  AK +G  FMETSAKT  NV   F  + 
Sbjct: 122 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 165

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 1e-34
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 15/179 (8%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-----------VISCNKNICT 56
            +++  G  GVGK++ + R+    F   +I T+   +R+             S       
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 57  LQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS 116
           LQ+ DT G  +F ++          F+L++  TS+QS   +R     ++          +
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN----AYCEN 121

Query: 117 IPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
             I+L+GNK D  + REV+  +    A  +G  + ETSA T  NV++    LL+L   R
Sbjct: 122 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 2e-34
 Identities = 58/169 (34%), Positives = 96/169 (56%), Gaps = 9/169 (5%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           M E    Y++VV GAGGVGKS+L ++ ++  F + Y PTIED+YR+ +  +   C L I 
Sbjct: 1   MTE----YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDIL 56

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DT G  ++ AM+   +  G  F+ V++  + +S E++    E I+  K   +    +P++
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD----VPMV 112

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           LVGNKCD        + + +  A+ +G  ++ETSAKT   V++ F  L+
Sbjct: 113 LVGNKCDLAARTV-ESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 3e-34
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           ++ +V G  G GKS L+ +F++  F++    TI   +  ++I+       LQI DT G  
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++ R         +LVY  TSR++   L       R          +I I+L GNK 
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-----QNIVIILCGNKK 120

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
           D   +REV+  E    A+     F+ETSA T  NV+E F +      N+
Sbjct: 121 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 169

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  117 bits (293), Expect = 3e-34
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSH 66
           +++++ G   VGK+S + R+   +F  +++ T+   ++ + I  N     LQI DT G  
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++  +          FIL+Y  T+ +S   ++     I+          +  ++LVGNKC
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT-----YSWDNAQVLLVGNKC 120

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN--LEK 173
           D  + R VS+  G   A   G  F E SAK N NVK+ F  L++   EK
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 6e-34
 Identities = 70/164 (42%), Positives = 106/164 (64%), Gaps = 5/164 (3%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +Y++VV G+GGVGKS+L ++FV+G F E Y PTIED+YR+ +  +   C L+I DT G+ 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           QF AM+ L +  G  F LVYS T++ +  +L+ + E I   K   +    +P++LVGNKC
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED----VPMILVGNKC 118

Query: 127 DETENREVSAAEGEAEAKMW-GCHFMETSAKTNHNVKELFAELL 169
           D  + R V   +G+  A+ W  C F+E+SAK+  NV E+F +L+
Sbjct: 119 DLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 9e-34
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 6/162 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNI-CTLQITDTTGSH 66
           +++V  G   VGK+SL+ RF+  +F  +Y  TI   +       ++    LQ+ DT G  
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++    I    A ++VY  T+  S ++     + +R  +G     + + IMLVGNK 
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-----SDVIIMLVGNKT 115

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           D  + R+VS  EGE +AK     F+ETSAK  +NVK+LF  +
Sbjct: 116 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 157

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 2e-33
 Identities = 50/164 (30%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSH 66
            ++++ G  GVGKSSL+LRF   TF      TI  D   + IS + N   L I DT G  
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F  +           ILVY  T R +  +L      +       +      + ++    
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND-----IVNMLVGNK 122

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
            + ENREV   EG   A+     F+E SAKT   V+  F EL+ 
Sbjct: 123 IDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVE 166

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 2e-32
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKN-ICTLQITDTTGSH 66
           ++VV+ G G VGK+SLVLR+ +  F + +I T+  ++             L I DT G  
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F A+  +     +  ILVY  T   S ++++   + +R+  G         + +VGNK 
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI-----CLCIVGNKI 118

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           D  + R VS  E E+ A+  G     TSAK N  ++ELF +L 
Sbjct: 119 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 161

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-31
 Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 4/168 (2%)

Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITD 61
           P  S  +++VV G GGVGKS+L ++F++  F   Y PTIED+Y ++ S +     L I D
Sbjct: 1   PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILD 60

Query: 62  TTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIML 121
           T G  +F AM+   +  GH F+LV++   RQS  E+  ++  I   K   +     P++L
Sbjct: 61  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD----FPVVL 116

Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           VGNK D    R+V  +E  A        + E SAK   NV E F +L+
Sbjct: 117 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 164

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 6e-31
 Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 18/178 (10%)

Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
                + VV G G VGK+ L++ +    F   YIPT+ D Y   +  +     L + DT 
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
           G   +  ++ LS  +    ++ +S  S  S E +R  W              + PI+LVG
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVG 116

Query: 124 NKCDETENREVS------------AAEGEAEAKMWG-CHFMETSAKTNHNVKELFAEL 168
            K D  ++++                +G A AK  G   ++E SA T   +K +F E 
Sbjct: 117 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 7e-31
 Identities = 62/168 (36%), Positives = 88/168 (52%), Gaps = 4/168 (2%)

Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
               YR+VV G GGVGKS+L ++F++  F   Y PTIED+Y +    +     L I DT 
Sbjct: 2   MQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTA 61

Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
           G  +F AM+   +  G  F+LV+S T R S EE+      I   K         P++L+G
Sbjct: 62  GQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDE----FPMILIG 117

Query: 124 NKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
           NK D    R+V+  EG+  A+     +ME SAK   NV + F EL+ +
Sbjct: 118 NKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRV 165

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 1e-30
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 4/168 (2%)

Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKN-ICTLQITDT 62
           +S+ ++V++ G GGVGKSSL+ R+V   F      TI   +            T+QI DT
Sbjct: 3   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 62

Query: 63  TGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV 122
            G  +F +++          +L +S    QS + L    +          E  S P +++
Sbjct: 63  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY-YADVKEPESFPFVIL 121

Query: 123 GNKCDETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELL 169
           GNK D +E R+VS  E +A  +      + ETSAK   NV   F E +
Sbjct: 122 GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 168

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 2e-30
 Identities = 56/169 (33%), Positives = 81/169 (47%), Gaps = 7/169 (4%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISC-NKNICTLQITDTTGSH 66
           +++V+ G   VGKSSLVLRFVKG F E    TI   +     C +      +I DT G  
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           ++ ++  +      A I+VY  T+ +S    +   + ++          +I I L GNK 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-----PNIVIALSGNKA 121

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL-NLEKN 174
           D    R V   E ++ A      FMETSAKT+ NV E+F  +   L KN
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 3e-30
 Identities = 46/206 (22%), Positives = 76/206 (36%), Gaps = 31/206 (15%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
            + VV G G VGK+ L++ +    F   Y+PT+ D Y   +       TL + DT G   
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           +  ++ LS  +   F++ +S  S  S E ++  W                P +LVG + D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-----KTPFLLVGTQID 118

Query: 128 ETENREVSA------------AEGEAEAKM-WGCHFMETSAKTNHNVKELFAELLNLEKN 174
             ++                    E  A+      ++E SA T   +K +F E       
Sbjct: 119 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA------ 172

Query: 175 RNISLQLEKKGQLKGTRKLKEKCSVM 200
             I   LE     K       +C ++
Sbjct: 173 --ILAALEPPEPKK-----SRRCVLL 191

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 9e-30
 Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 9/176 (5%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT 60
           +P     Y++VV G GGVGKS+L ++F +  F   Y PTIED+Y +    +     L + 
Sbjct: 2   LPT----YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVL 57

Query: 61  DTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM 120
           DT G  +F AM+   +  G  F++VYS T + S E +    ++I   K   +     P++
Sbjct: 58  DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES----FPMI 113

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT-NHNVKELFAELLNLEKNR 175
           LV NK D    R+V+  +G+  A  +   ++ETSAK    NV + F +L+ + + +
Sbjct: 114 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 3e-29
 Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 6/172 (3%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           + ++ +FG  GVGKS+LV+RF+   F   Y PT+E TYR   + +  + +++I DT G  
Sbjct: 2   EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
                +   +  G  F+LVY  T R S EE+ P+  ++ E K   N    + ++LVGNK 
Sbjct: 62  DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN----VTLILVGNKA 116

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELFAELLNLEKNRNI 177
           D   +R+VS  EGE  A    C F E SA T   N+ E+F EL    + R +
Sbjct: 117 DLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRM 168

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (258), Expect = 5e-29
 Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 9/166 (5%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISC-NKNICTLQITDTTGSH 66
           ++++V G   VGK+ L  RF  G F +    TI   +R+     +     +Q+ DT G  
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 67  QFPAMQR-LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
           +F            HA + VY  T+  S   L    E  ++     +    IP +LVGNK
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND----IPRILVGNK 118

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKT---NHNVKELFAEL 168
           CD     +V     +  A        ETSAK    N +V+ +F  L
Sbjct: 119 CDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 5e-28
 Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
            + VV G G VGK+ L++ +    F E Y+PT+ D Y   ++       L + DT G   
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           +  ++ LS      F++ +S  +  S + ++  W    +         ++P +L+G + D
Sbjct: 70  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-----NVPFLLIGTQID 124

Query: 128 ETENRE------------VSAAEGEAEAKMWG-CHFMETSAKTNHNVKELFAELL 169
             ++ +            +   +G+  AK  G C ++E SA T   +K +F E +
Sbjct: 125 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (250), Expect = 9e-28
 Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 6/163 (3%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGS 65
           + +V + G  GVGKSS++ RFV+ +F  +  PTI      + +     +    I DT G 
Sbjct: 4   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 63

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +F A+  +      A I+VY  T  ++   L+     +R+    +       + + GNK
Sbjct: 64  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSI-----VVAIAGNK 118

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
           CD T+ REV   + +  A      F+ETSAK   N+ ELF E+
Sbjct: 119 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 161

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 4e-27
 Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 18/174 (10%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
            ++V+ G G  GK+ L++   K  F E Y+PT+ + Y   I  +     L + DT G   
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           +  ++ LS       ++ +S  S  SLE +   W    +     +   ++PI+LVGNK D
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-----HFCPNVPIILVGNKKD 117

Query: 128 ETENREV------------SAAEGEAEAKMWGC-HFMETSAKTNHNVKELFAEL 168
              +                  EG   A   G   +ME SAKT   V+E+F   
Sbjct: 118 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 99.4 bits (246), Expect = 5e-27
 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 2/178 (1%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKN-ICTLQITDTTGSH 66
            +V++ G  GVGK+SL+ ++V   F   Y  TI   +        + + T+QI DT G  
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F ++           +LV+  T+  + + L    +     +    +  + P +++GNK 
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI-QASPRDPENFPFVVLGNKI 121

Query: 127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184
           D    +  +              + ETSAK   NV++ F  +      +   ++L  +
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 179

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.0 bits (245), Expect = 5e-27
 Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 9/165 (5%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNK-NICTLQITDTTGSHQ 67
           ++V+ G   VGKSS+VLRFV   F E+  PTI   +         +    +I DT G  +
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F ++  +      A ++VY  T  QS  + R   + + E          I I LVGNK D
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHE-----QASKDIIIALVGNKID 119

Query: 128 ---ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
              E   R+V+  EGE  A+  G  F ETSAKT  NV ++F  + 
Sbjct: 120 MLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (244), Expect = 6e-27
 Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 4/166 (2%)

Query: 4   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
           QS   ++ + G   VGKSSL ++FV+G F +SY PTIE+T+ ++I+ N     LQ+ DT 
Sbjct: 1   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTA 60

Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
           G  ++    +      + +ILVYS TS +S E ++ I   + +  G       IPIMLVG
Sbjct: 61  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----IPIMLVG 116

Query: 124 NKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
           NK D    R +S  EG+A A+ W   F+E+SAK N    ++F  ++
Sbjct: 117 NKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 162

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (238), Expect = 7e-26
 Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 13/182 (7%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           + R+ V G    GKSSL+ RF+ G++ +    T  + Y++ +  +     + I       
Sbjct: 5   ELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIR-----E 58

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +  A          A I V+S     S + +  +   +   +G      ++ ++   ++ 
Sbjct: 59  EAGAPDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 118

Query: 127 DETENREVSAAEGEAEAK-MWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKKG 185
             +  R V  A   A    M  C + ET A    NV  +F E+      + + + L K+ 
Sbjct: 119 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVA-----QKV-VTLRKQQ 172

Query: 186 QL 187
           QL
Sbjct: 173 QL 174

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.2 bits (235), Expect = 1e-25
 Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 7/161 (4%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKN-ICTLQITDTTGSHQ 67
           ++VV G G VGKSS++ R+ KG F + Y  TI   + +      +    L + DT G  +
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F A+ +       A +LV+S T R+S E +    E +    G       IP  LV NK D
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD------IPTALVQNKID 117

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
             ++  +   E E  AK     F  TS K + NV E+F  L
Sbjct: 118 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 158

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.5 bits (236), Expect = 1e-25
 Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 19/174 (10%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           ++VV G    GK++L+  F K  F E+Y+PT+ + Y      +     L + DT+GS  +
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 63

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             ++ LS     A ++ +  +  ++L+ +   W+   +         +  ++LVG K D 
Sbjct: 64  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDL 118

Query: 129 TEN------------REVSAAEGEAEAKMWG-CHFMETSAKTNHN-VKELFAEL 168
             +              VS  +G   AK  G   ++E SA  + N V+++F   
Sbjct: 119 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 172

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.1 bits (235), Expect = 2e-25
 Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 7/176 (3%)

Query: 6   NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKNICTLQITDTT 63
           N  +V++ G  GVGK+SL+ R+V   + + Y  TI   +   +V      + T+Q+ DT 
Sbjct: 1   NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTA 60

Query: 64  GSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
           G  +F ++           +LVY  T+  S E     W          N   + P +++G
Sbjct: 61  GQERFQSLGVAFYRGADCCVLVYDVTNASSFEN-IKSWRDEFLVHANVNSPETFPFVILG 119

Query: 124 NKCDETENREVSAAEGEAE--AKMWGCHFMETSAKTNHNVKELFAELLN--LEKNR 175
           NK D  E++++ + +   E    +       TSAK   NV   F E+    L++N+
Sbjct: 120 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 175

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (232), Expect = 3e-25
 Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 10/177 (5%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           Y+V++ GA GVGKS+L   F               TY + I  +    +L + D      
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
              +    ++ G A+++VYS T + S E+   +   +R  +   +    +PI+LVGNK D
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD----VPIILVGNKSD 116

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184
              +REVS  EG A A ++ C F+ETSA  +HNV+ LF  ++     R I L+ + K
Sbjct: 117 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV-----RQIRLRRDSK 168

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (228), Expect = 2e-24
 Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 10/175 (5%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCNKNICTLQITDTTGS 65
            +++V+ G GG GK++ V R + G F + Y+ T+  + +  V   N+      + DT G 
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62

Query: 66  HQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNK 125
            +F  ++     +    I+++  TSR + + +      +           +IPI+L GNK
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE------NIPIVLCGNK 116

Query: 126 CDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL-NLEKNRNISL 179
            D  + +    A+     +     + + SAK+N+N ++ F  L   L  + N+  
Sbjct: 117 VDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 169

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.1 bits (227), Expect = 2e-24
 Identities = 47/168 (27%), Positives = 65/168 (38%), Gaps = 1/168 (0%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           YRVV+ G  GVGKS+L   F            +        +   +  +  I        
Sbjct: 4   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 63

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
               +             Y      +          +R     A +   IPI+LVGNK D
Sbjct: 64  KGENEW-LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 122

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
               REVS +EG A A ++ C F+ETSA   HNVKELF  ++   + R
Sbjct: 123 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 91.3 bits (225), Expect = 4e-24
 Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 11/165 (6%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           R+++ G    GK++++ +   G      + TI      V +      +  + D  G  + 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 57

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC-- 126
             + R         I V     R+ + E R     +       +      +++  NK   
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRD----AVLLVFANKQDL 113

Query: 127 -DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
            +     E++   G    +    +   T A +   + E    L N
Sbjct: 114 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 91.2 bits (225), Expect = 5e-24
 Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 11/169 (6%)

Query: 5   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
           + + R+++ G    GK++++ +   G      + TI      V +         + D  G
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQS----VTTIPTVGFNVETVTYKNVKFNVWDVGG 65

Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
             +   + R   +     I V  C  R  ++E R     I   +   +      I++  N
Sbjct: 66  QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD----AIILIFAN 121

Query: 125 KCDETENR---EVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
           K D  +     E+    G    +    +   + A +   + E    L +
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 170

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 86.2 bits (212), Expect = 5e-22
 Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 11/169 (6%)

Query: 5   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
             + R+++ G    GK++L+ +                    + S       L + D  G
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQ----GFNIKSVQSQGFKLNVWDIGG 69

Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
             +     R         I V     R+  EE       + E +  +     +P+++  N
Sbjct: 70  QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC----VPVLIFAN 125

Query: 125 KCD---ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
           K D        E++        +         SA T   V++    +  
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK 174

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 83.5 bits (205), Expect = 6e-21
 Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 11/167 (6%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +++V++ G    GK++++ +F       +      +          N     + D  G  
Sbjct: 15  EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQE 70

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
              +      +     I+V   T R+ +   R     +        +L    +++  NK 
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH----EDLRKAGLLIFANKQ 126

Query: 127 DETEN---REVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
           D  E     E+S        K    H     A T   + +    +++
Sbjct: 127 DVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 173

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 82.4 bits (202), Expect = 9e-21
 Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 10/170 (5%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           +  + + G    GK++ V     G F E  IPT+    R++   N  I   ++ D  G  
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTI---KLWDIGGQP 58

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
           +F +M         A + +     ++ +E  +     + +          IP++++GNK 
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG----IPVLVLGNKR 114

Query: 127 D---ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK 173
           D     + +E+      +  +         S K   N+      L+   K
Sbjct: 115 DLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 81.6 bits (200), Expect = 2e-20
 Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 11/172 (6%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           + R+++ G    GK++++ +F      ++  PT+    +           L I D  G  
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKT---LEHRGFKLNIWDVGGQK 57

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
              +  R         I V     RQ +++ +   + +   +  A       +++  NK 
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG----ATLLIFANKQ 113

Query: 127 DETENREVS---AAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
           D       +    A      +         SA T  ++      LL+   +R
Sbjct: 114 DLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 80.0 bits (196), Expect = 1e-19
 Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 11/174 (6%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           + R+++ G  G GK++++ R   G    +  PTI      +    KN+  L + D  G  
Sbjct: 17  ELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVETL--SYKNL-KLNVWDLGGQT 72

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
                 R   +   A I V   T +  +        ++ +      EL    +++  NK 
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE----EELQDAALLVFANKQ 128

Query: 127 DETEN---REVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNI 177
           D+       EVS      E K      + +SA     + E    L+++ K   +
Sbjct: 129 DQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQL 182

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 76.7 bits (187), Expect = 2e-18
 Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 11/174 (6%)

Query: 5   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
           + + R+++ G  G GK++++ R   G      + TI      V +        Q+ D  G
Sbjct: 3   TREMRILILGLDGAGKTTILYRLQVGEV----VTTIPTIGFNVETVTYKNLKFQVWDLGG 58

Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
                   R   S   A I V     R  +   +     + E      EL    +++  N
Sbjct: 59  LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE----EELRKAILVVFAN 114

Query: 125 KCDETENR---EVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNR 175
           K D  +     E++ + G    K       +TSA     + E    L+   K+R
Sbjct: 115 KQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.1 bits (170), Expect = 6e-16
 Identities = 23/170 (13%), Positives = 47/170 (27%), Gaps = 18/170 (10%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF 68
           +++  G    GK++L+          +  PT   T                 D  G  Q 
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-ATLQPTWHPTS---EELAIGNIKFTTFDLGGHIQA 57

Query: 69  PAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE 128
             + +    + +  + +      +  +E R   + +        EL  +P +++GNK D 
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA----ELKDVPFVILGNKIDA 113

Query: 129 TENREVS----------AAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
                 +              +             S    +   E F  L
Sbjct: 114 PNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 163

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.1 bits (165), Expect = 5e-15
 Identities = 25/192 (13%), Positives = 48/192 (25%), Gaps = 40/192 (20%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           + ++++ GAG  GKS++V +        + I                    ++ D  G  
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETH--------FTFKDLHFKMFDVGGQR 53

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKG------GANELASIPIM 120
                         A I   + +    +         + E+                 I+
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWG--------------------------CHFMETS 154
           L  NK D  E +   +       +  G                           +   T 
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 155 AKTNHNVKELFA 166
           A    NV+ +F 
Sbjct: 174 ATDTKNVQFVFD 185

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 67.8 bits (164), Expect = 5e-15
 Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 23/178 (12%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
            ++V  G    GK++L+         +   PT+  T  ++        T  +       Q
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTSEELTIAGMTFTTFDLGGH---IQ 69

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
              + +  +   +  + +  C   + L E +   + +         +A++PI+++GNK D
Sbjct: 70  ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD----ETIANVPILILGNKID 125

Query: 128 ETENREVS---------------AAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
             E                     +    E           S        E F  +  
Sbjct: 126 RPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 183

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.7 bits (151), Expect = 6e-13
 Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 5/177 (2%)

Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCNKNICTLQITDTTGSHQ 67
           V+  G    GK+ L +R + G +R++   +I D+    +V +   N  TL       S +
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
           F  + R   S      +V S   ++ ++++      +           S  +++  NK D
Sbjct: 62  FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKN--SPSLLIACNKQD 119

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184
               +     + + E ++       ++A +  +        L  +       QL  K
Sbjct: 120 IAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLK 176

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.3 bits (145), Expect = 3e-12
 Identities = 23/194 (11%), Positives = 56/194 (28%), Gaps = 37/194 (19%)

Query: 7   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
           + ++++ G G  GKS+ + +        S +PT           +       + D  G  
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDLQSVIFR---MVDVGGQR 56

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS------IPIM 120
                         + + + + +    +         + E+K     + +        ++
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 121 LVGNKCDETENREVSAAEGEAEAKMWG--------------------------CHFMETS 154
           L  NK D  E + + +   +   +  G                           +   T 
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 155 AKTNHNVKELFAEL 168
           A    N++ +FA +
Sbjct: 177 ATDTENIRFVFAAV 190

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.8 bits (136), Expect = 6e-11
 Identities = 23/176 (13%), Positives = 49/176 (27%), Gaps = 14/176 (7%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
            ++++ GAG  GKS+ + +           PT                  ++ D  G   
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIH---EYDFEIKNVPFKMVDVGGQRS 56

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELR------PIWEVIRETKGGANELASIPIML 121
                        + + + S +    +               I ET       +++ I+L
Sbjct: 57  ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIIL 116

Query: 122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNI 177
             NK D  E +    +  +   +                + E F      ++ R +
Sbjct: 117 FLNKTDLLEEKVQVVSIKDYFLE--FEGDPHCLRDVQKFLVECFRGKRRDQQQRPL 170

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.1 bits (137), Expect = 7e-11
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 8   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           +R+++ GAG  GKS++V +          + T             +     + D  G   
Sbjct: 7   HRLLLLGAGESGKSTIVKQMRILHV----VLTS---GIFETKFQVDKVNFHMFDVGGQRD 59

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSL----EELRPIWEVIRETKGGANE--LASIPIML 121
                    +   A I V + +S   +     +   + E +   K   N   L +I ++L
Sbjct: 60  ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVIL 119

Query: 122 VGNKCDETENREVS 135
             NK D    + ++
Sbjct: 120 FLNKQDLLAEKVLA 133

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.0 bits (131), Expect = 3e-10
 Identities = 22/196 (11%), Positives = 53/196 (27%), Gaps = 10/196 (5%)

Query: 5   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTG 64
           S    +++ G    GK+SL+      + R + +     +          +          
Sbjct: 1   SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLR 60

Query: 65  SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGN 124
                 ++  +        +V S    + L         I      + E   I I++  N
Sbjct: 61  YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCE-NGIDILIACN 119

Query: 125 KCDETENREVSAAEGEAEAKM--------WGCHFMETSAKTNHNVKELFAELLNLEKNRN 176
           K +    R  S  +   E+++           + +E         +    ++L       
Sbjct: 120 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL-DVLQSTDGFK 178

Query: 177 ISLQLEKKGQLKGTRK 192
            +         +G+  
Sbjct: 179 FANLEASVVAFEGSIN 194

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.9 bits (120), Expect = 8e-09
 Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 16/182 (8%)

Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTL----------QI 59
           ++  G   VGKS+L+ R      R    P +     ++   N  I  +          + 
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 60  TDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANEL--ASI 117
                  +       +       +LV    +   + +       I         L    I
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122

Query: 118 PIMLVGNKCDETENREVS----AAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEK 173
           P ++  NK D+ +N +      A + E         F+  SAK   N++ L   +  + +
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 182

Query: 174 NR 175
            R
Sbjct: 183 ER 184

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.1 bits (105), Expect = 8e-07
 Identities = 22/168 (13%), Positives = 45/168 (26%), Gaps = 5/168 (2%)

Query: 9   RVVVFGAGGVGKSSLV--LRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSH 66
            + + G   VGKSS +  L   K   R S  P    T    I  ++              
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 67  QFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC 126
                +                 +   + +LR              +   IP++++  K 
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 127 DETENREVSAAEGEAEAKM---WGCHFMETSAKTNHNVKELFAELLNL 171
           D+    +           +        +  S++T     E +  +  +
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKM 192

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (103), Expect = 1e-06
 Identities = 22/163 (13%), Positives = 41/163 (25%), Gaps = 7/163 (4%)

Query: 9   RVVVFGAGGVGKSSLVLRFV-KGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ 67
           +VV+ G    GKSSL+     +     + I        +       +    I        
Sbjct: 3   KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62

Query: 68  FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD 127
              ++R+ I +    I                  +                 +       
Sbjct: 63  SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIA------RLPAKLPIT 116

Query: 128 ETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLN 170
              N+     E    +++ G   +  SA+T   V  L   L  
Sbjct: 117 VVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQ 159

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 25/187 (13%), Positives = 51/187 (27%), Gaps = 16/187 (8%)

Query: 2   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGT------------FRESYIPTIEDTYRQVIS 49
           PE ++  +V + G   VGKS+L    +                       I+      + 
Sbjct: 3   PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVD 62

Query: 50  CNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKG 109
                   ++   T           SI K    ++V   T   + ++ R    + R  + 
Sbjct: 63  TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA 122

Query: 110 GANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELL 169
                    ++       E    E +    E    +     + TSA    N+  +   + 
Sbjct: 123 SVVVFNKWDLV----VHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMN 178

Query: 170 NLEKNRN 176
               +  
Sbjct: 179 LAYASYT 185

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 44.3 bits (103), Expect = 1e-06
 Identities = 26/162 (16%), Positives = 43/162 (26%), Gaps = 1/162 (0%)

Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
           V + G   VGKS+L+   +                R      +    +   DT G H+  
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67

Query: 70  AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129
                 + +     L         ++   P              L     +L+     + 
Sbjct: 68  DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127

Query: 130 ENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
                 A +      +        SA     V EL A+LL L
Sbjct: 128 AKYPEEAMK-AYHELLPEAEPRMLSALDERQVAELKADLLAL 168

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 25/162 (15%), Positives = 48/162 (29%)

Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
           + + G   VGKS+L+ + +      +        +R V    +        DT G H   
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67

Query: 70  AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129
                 +    A   +        + E                E  +  I+ V    +  
Sbjct: 68  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127

Query: 130 ENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
           E  ++        ++M     +  SA+T  NV  + A +   
Sbjct: 128 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKH 169

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (101), Expect = 4e-06
 Identities = 21/169 (12%), Positives = 37/169 (21%), Gaps = 6/169 (3%)

Query: 6   NDYRVVVFGAGGVGKSSLV--LRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT 63
               V   G    GKSS +  L   K   R S  P            +            
Sbjct: 15  TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 74

Query: 64  GSHQFPA----MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI 119
                       + L         L            L+ + + + E    +N    + +
Sbjct: 75  AEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 134

Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAEL 168
                        +++       A          S+     V +L  +L
Sbjct: 135 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 183

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.3 bits (95), Expect = 2e-05
 Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 2/171 (1%)

Query: 10  VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP 69
           V++ G   VGKS+L  + VK                   +      T ++ DT G    P
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62

Query: 70  AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET 129
                   K     ++        + + +       E+       +++  +LV NK +  
Sbjct: 63  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122

Query: 130 ENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQ 180
              E           +     +  SA+ N N+  +   ++   + + + L+
Sbjct: 123 REFEREV--KPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLE 171

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 32/175 (18%), Positives = 54/175 (30%), Gaps = 13/175 (7%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTT----- 63
            V + G   VGKS+L+        + +       T    +   +                
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFT--TLVPNLGMVETDDGRSFVMADLPGLI 60

Query: 64  -GSHQFPAMQR---LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI 119
            G+HQ   +       I +    + V   +  +  +       + +E       L   P 
Sbjct: 61  EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQ 120

Query: 120 MLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNLEKN 174
           ++V NK D  E  E    E   E           SA T   ++EL  E+ N  +N
Sbjct: 121 IIVANKMDMPEAAEN--LEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 173

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 9/168 (5%)

Query: 9   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQIT--DTTGSH 66
            V + G    GKSSL+    +   + +  P    T    +   +     + T  D  G  
Sbjct: 3   DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPF--TTLSPNLGVVEVSEEERFTLADIPGII 60

Query: 67  QFPAMQR---LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
           +  +  +   L   +  A   V       + E L+ +  + +E       L   P ++  
Sbjct: 61  EGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 120

Query: 124 NKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAELLNL 171
           NK D  E   V            G   +  SA T   +  L   L  L
Sbjct: 121 NKVDLLEEEAV--KALADALAREGLAVLPVSALTGAGLPALKEALHAL 166

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 17/144 (11%), Positives = 39/144 (27%), Gaps = 16/144 (11%)

Query: 3   EQSNDYRVVVFGAGGVGKSSLVLRFVK----------GTFRESYIPTIEDTYRQVISCNK 52
           E  N   ++V G GGVGKSS V   +                  + +       +   + 
Sbjct: 28  EDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDT 87

Query: 53  NICTLQITDTTGSHQFPAMQR-LSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGA 111
               L             ++  L        + V    + +     + + + I ++ G  
Sbjct: 88  --PGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFG-- 143

Query: 112 NELASIPIMLVGNKCDETENREVS 135
            +      ++       +    + 
Sbjct: 144 -KGIWNKAIVALTHAQFSPPDGLP 166

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 13/125 (10%)

Query: 9   RVVVFGAGGVGKSSLV--LRFVKGTFRESYIPTIEDTYRQVISC-NKNICTLQITDTTG- 64
            V V G  G GKSS +  LR +      +    + +   +     + NI  +   D  G 
Sbjct: 58  NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117

Query: 65  -SHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVG 123
            S  FP    L   K + +      ++ +  +    I + I   K             V 
Sbjct: 118 GSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMK--------KEFYFVR 169

Query: 124 NKCDE 128
            K D 
Sbjct: 170 TKVDS 174

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 33/222 (14%), Positives = 71/222 (31%), Gaps = 38/222 (17%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVK----------------GTFRESYIPTIEDTY 44
           MP   N  R+ V G  G GKS+ +  F                   +         + T 
Sbjct: 48  MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTR 107

Query: 45  RQVISCNKNICTLQITDTTGSHQFPAMQR----LSISKGHAFILVYSCTSRQS---LEEL 97
              ++  +      +  +          R    L  + G+  ++V +    QS   +  +
Sbjct: 108 MNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARM 167

Query: 98  RPIWEVIRETKGGANELASIPIML------VGNKCDETENREVSAAEGEAEAKM------ 145
              +  ++   GG +       ++      V NK D   +  V+ A    E+ +      
Sbjct: 168 VDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRK 227

Query: 146 ---WGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184
              W    +  SA     + E++  +++ +     S +L++ 
Sbjct: 228 YDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASGRLQQV 269

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 36/226 (15%), Positives = 69/226 (30%), Gaps = 45/226 (19%)

Query: 1   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKG---------------TFRESYIPTIEDTYR 45
           +P+     RV + G  GVGKS+ +                     +   +    + D  R
Sbjct: 45  LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 104

Query: 46  QV-ISCNKNICTLQITDTTGSHQFPAMQR----LSISKGHAFILVYSCTSRQS------- 93
              ++ ++N        +       A  R    L  + G   ILV +    QS       
Sbjct: 105 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADL 164

Query: 94  -----LEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM--- 145
                +  L    + ++  K G  ELA    M+  NK D+ +    ++A           
Sbjct: 165 TDFFLVLMLPGAGDELQGIKKGIFELAD---MIAVNKADDGDGERRASAAASEYRAALHI 221

Query: 146 -------WGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEKK 184
                  W    +  S      +  L++ + +       + ++  K
Sbjct: 222 LTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAGK 267

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.93
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.91
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.9
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.9
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.89
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.86
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.86
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.84
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.82
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.8
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.76
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.75
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.72
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.69
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.64
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.62
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.62
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.62
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.59
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.59
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.58
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.58
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.45
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.44
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.25
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.12
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.08
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.02
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.99
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.76
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.73
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.61
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.42
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.41
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.4
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.35
d1okkd2	207	GTPase domain of the signal recognition particle r	98.33
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.31
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.28
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.27
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.2
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.04
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.02
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.95
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.87
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.85
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.82
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.82
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.8
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.78
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.76
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.75
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.67
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.65
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.65
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.64
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.63
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.63
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.6
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.58
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.58
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.56
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.52
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.5
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.5
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.46
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.45
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.44
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.44
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.43
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.42
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.4
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.39
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.39
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.38
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.37
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.36
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.36
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.35
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.34
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.33
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.33
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.31
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.31
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.28
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.28
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.27
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.26
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.26
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.25
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.25
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.25
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.23
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.22
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.2
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.19
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.19
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.19
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.18
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.13
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.12
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.11
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.11
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.1
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.1
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.09
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.08
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.08
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.07
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.04
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.03
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.02
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.97
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.9
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.86
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.85
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.85
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.84
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.76
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.75
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.75
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.74
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.72
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.67
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.66
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.65
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.64
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.63
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.62
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.61
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.59
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.59
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.54
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.52
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.5
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.5
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.39
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.39
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.3
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.28
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.27
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.16
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.16
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.06
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.05
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.98
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.98
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.97
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.96
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.91
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.84
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.78
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.71
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.69
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.61
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.59
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.56
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.55
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.54
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.53
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.53
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.53
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.51
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.44
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.43
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.33
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.33
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.28
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.25
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.18
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.11
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.05
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.04
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.02
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.02
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.94
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.93
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.76
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.71
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.6
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.58
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.56
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.1
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.97
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.73
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.72
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.1
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.75
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	92.23
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.26
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.25
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.72
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	90.63
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.48
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	90.29
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	90.28
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.06
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.84
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.45
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.19
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	87.16
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.96
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	86.77
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	85.82
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	85.75
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.9
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	84.04
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.06
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.66
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	81.24
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	80.54
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	80.16

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-38  Score=218.30  Aligned_cols=171  Identities=36%  Similarity=0.589  Sum_probs=157.0

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA   81 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   81 (200)
                      |++...+||+++|++|||||||+++++.+.+...+.++........+..++..+.+.+||++|.+++...+..++.++++
T Consensus         1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            67788899999999999999999999999998888888877777888889999999999999999999999999999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      +++|||++++.++..+..|+..+.+...    ..+.|++||+||+|+.+.+.....+...++...+++|++|||++|.||
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv  156 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKD----RDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNV  156 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHT----SSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhc----cCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCH
Confidence            9999999999999999999998887663    467899999999999888888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q psy8700         162 KELFAELLNLEKNRN  176 (200)
Q Consensus       162 ~~~~~~i~~~~~~~~  176 (200)
                      +++|+.+++.+.++.
T Consensus       157 ~e~f~~l~~~i~k~~  171 (173)
T d2fn4a1         157 DEAFEQLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999875543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-38  Score=217.40  Aligned_cols=168  Identities=83%  Similarity=1.245  Sum_probs=152.7

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +++||+++|++|||||||+++++.+.+.+.+.|+.+..+......++..+.+.+||++|++.+......++..++++++|
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            47999999999999999999999999988899999888777788899999999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      ||+++++++..+..|+..+.+...   .....|+++|+||+|+...+++...+...+++..+++|++|||++|.||+++|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f  157 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKG---DVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF  157 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC------CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhc---cCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999998887664   24678999999999998888888888899999999999999999999999999


Q ss_pred             HHHHHHHhccc
Q psy8700         166 AELLNLEKNRN  176 (200)
Q Consensus       166 ~~i~~~~~~~~  176 (200)
                      +.|++.+.++.
T Consensus       158 ~~l~~~~~~~~  168 (171)
T d2erxa1         158 QELLNLEKRRT  168 (171)
T ss_dssp             HHHHHTCCSSC
T ss_pred             HHHHHHHHHhh
Confidence            99998775554

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=4.1e-37  Score=211.91  Aligned_cols=166  Identities=34%  Similarity=0.576  Sum_probs=150.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +.+||+++|++|||||||+++++.+.+...+.||.+..+...+..++..+.+.+||++|++.+..+...++++++++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            46899999999999999999999999988899998887777788899999999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|++++.++..+..|+..+.+...    .++.|+++|+||.|+.+.+++...+...+++..+++|++|||++|.||+++|
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  158 (168)
T d1u8za_          83 FSITEMESFAATADFREQILRVKE----DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVF  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHC----CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             eeccchhhhhhHHHHHHHHHHhhC----CCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999999888763    4678999999999998888888888999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q psy8700         166 AELLNLEKNR  175 (200)
Q Consensus       166 ~~i~~~~~~~  175 (200)
                      ++|++.+..|
T Consensus       159 ~~l~~~i~~r  168 (168)
T d1u8za_         159 FDLMREIRAR  168 (168)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHCc
Confidence            9999887653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-37  Score=211.20  Aligned_cols=165  Identities=37%  Similarity=0.591  Sum_probs=151.9

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ++.+||+++|++|||||||+++|+++.+...+.|+.+..+...+..++..+.+.+||++|...+..+...++..+|++++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            56789999999999999999999999998888999887777778889999999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |||+++++++..+..|+..+.+...    .++.|+++|+||+|+...++++..+...+++.++++|++|||++|.||+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~  157 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVG----KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDV  157 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHC----SSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhccc----ccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHH
Confidence            9999999999999999999887763    467899999999999888888888889999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy8700         165 FAELLNLEK  173 (200)
Q Consensus       165 ~~~i~~~~~  173 (200)
                      |+.|++.+.
T Consensus       158 f~~li~~~~  166 (167)
T d1xtqa1         158 FRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999988663

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.3e-37  Score=210.54  Aligned_cols=165  Identities=35%  Similarity=0.598  Sum_probs=151.8

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +++||+++|++|||||||++++.++.+.+.+.|+.+..+......++..+.+.+||++|.+.+..+...++++++++++|
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            46999999999999999999999999888888888877777778899999999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC-cHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKEL  164 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~-~i~~~  164 (200)
                      ||++++.++..+..|+..+.+...    ....|+++++||+|+.+.+.++..++..+++..+++|+++||+++. ||+++
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~----~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~  158 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKD----RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT  158 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHT----SSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred             cccccchhhhccchhhHHHHhhcc----ccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHH
Confidence            999999999999999999887763    4678999999999999888888888999999999999999999886 99999


Q ss_pred             HHHHHHHHhc
Q psy8700         165 FAELLNLEKN  174 (200)
Q Consensus       165 ~~~i~~~~~~  174 (200)
                      |..|.+.+.+
T Consensus       159 F~~l~~~i~~  168 (169)
T d1x1ra1         159 FHDLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-37  Score=211.17  Aligned_cols=164  Identities=32%  Similarity=0.477  Sum_probs=134.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|++|||||||++++.+..+. .+.++....+...+..++..+.+.+||++|++.+..++..++.++|++++|||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d   80 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   80 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccC-CcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence            79999999999999999999987653 34455556666677888999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFAE  167 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~~  167 (200)
                      ++++.++..+..|+..+.....    ....|+++|+||+|+.+.+++...+...+++..+++|++|||++|.||.++|+.
T Consensus        81 ~t~~~s~~~~~~~~~~i~~~~~----~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~  156 (168)
T d2gjsa1          81 VTDKGSFEKASELRVQLRRARQ----TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG  156 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred             ccccccccccccccchhhcccc----cccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHH
Confidence            9999999999999998887763    467899999999999888888888899999999999999999999999999999


Q ss_pred             HHHHHhccc
Q psy8700         168 LLNLEKNRN  176 (200)
Q Consensus       168 i~~~~~~~~  176 (200)
                      |.+.+..+.
T Consensus       157 l~~~i~~~~  165 (168)
T d2gjsa1         157 VVRQIRLRR  165 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998776543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=213.84  Aligned_cols=162  Identities=25%  Similarity=0.475  Sum_probs=144.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      .+||+++|++|||||||++++..+.+...+.|+.+.........++..+.+.+||++|++++..++..++.++|++++||
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   82 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   82 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeeccc
Confidence            58999999999999999999999999899999998777777778888999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHh-CCcEEEe
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMW-GCHFMET  153 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~-~~~~~~v  153 (200)
                      |++++++++.+..||.......     .++.|+++|+||+|+.+.            ..+...++..+++.. +++|++|
T Consensus        83 d~~~~~Sf~~~~~~~~~~~~~~-----~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  157 (191)
T d2ngra_          83 SVVSPSSFENVKEKWVPEITHH-----CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVEC  157 (191)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH-----CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEEC
T ss_pred             ccchHHHHHHHHHHHHHHHhhc-----CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEE
Confidence            9999999999988887766666     367999999999998643            346667778888775 4699999


Q ss_pred             cccCCCcHHHHHHHHHHHHh
Q psy8700         154 SAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~~  173 (200)
                      ||++|.||+++|+.+.+.+.
T Consensus       158 SAk~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         158 SALTQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             CTTTCTTHHHHHHHHHHHHT
T ss_pred             eCCCCcCHHHHHHHHHHHHh
Confidence            99999999999999998664

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-36  Score=208.82  Aligned_cols=165  Identities=38%  Similarity=0.631  Sum_probs=148.3

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      ..+||+++|++|||||||++++..+.+...+.|+.+......+..++..+.+.+||++|...+......++..+|++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            36999999999999999999999999888889998888888888899999999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|.++++++..+..|+..+.....    ....|++||+||+|+.+.......+...+++..+++|++|||++|.||+++|
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f  159 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKD----RDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF  159 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHT----SSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcc----cCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHH
Confidence            999999999999999988877663    4678999999999998888888888999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy8700         166 AELLNLEKN  174 (200)
Q Consensus       166 ~~i~~~~~~  174 (200)
                      +.|++.+.+
T Consensus       160 ~~l~~~i~k  168 (171)
T d2erya1         160 HELVRVIRK  168 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-36  Score=207.93  Aligned_cols=164  Identities=49%  Similarity=0.827  Sum_probs=151.5

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +++||+++|++|||||||+++++++.+.+.+.++.+..+......++..+.+.+||++|++.+......++..++++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            46999999999999999999999999988999998888788888899999999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|++++.++..+..|+..+.....    .++.|++||+||+|+.+.+.....+...+++..+++|++|||++|.||+++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f  157 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRVKR----YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF  157 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTT----TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHH
T ss_pred             eeecchhhhhhhhchhhhhhhhcc----CCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHH
Confidence            999999999999999998887663    4678999999999998888888888889999999999999999999999999


Q ss_pred             HHHHHHHh
Q psy8700         166 AELLNLEK  173 (200)
Q Consensus       166 ~~i~~~~~  173 (200)
                      +.|++.+.
T Consensus       158 ~~i~~~i~  165 (167)
T d1kaoa_         158 AEIVRQMN  165 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99988663

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.3e-36  Score=207.57  Aligned_cols=164  Identities=29%  Similarity=0.511  Sum_probs=147.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|++|||||||+++|..+.+.+.+.++.+ ......+...+..+.+++|||||++.+..++..+++++|++|+|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999988888888776 44455667778889999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|+++++++.....|+..+....     ....|+++++||.|+.+...+...+...+++..+++|++|||++|.||.++|
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  159 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKTYS-----WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  159 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHC-----CSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EECccchhhhhhhhhhhhhhccc-----CCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHH
Confidence            99999999999999998776655     4678999999999998888888888888999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q psy8700         166 AELLNLEKNR  175 (200)
Q Consensus       166 ~~i~~~~~~~  175 (200)
                      ++|.+.+.++
T Consensus       160 ~~l~~~i~ek  169 (169)
T d3raba_         160 ERLVDVICEK  169 (169)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhhC
Confidence            9999987653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-36  Score=206.56  Aligned_cols=164  Identities=37%  Similarity=0.613  Sum_probs=147.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      ++||+++|++|||||||+++++.+.+.+.+.||.+..+......++..+.+++||++|.+.+. ....++.+++++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            689999999999999999999999998999999887777777788999999999999998764 5567888999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCC-cHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNH-NVKELF  165 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~-~i~~~~  165 (200)
                      |+++++++..+..|+........    .++.|+++|+||+|+.+.+.++..++..+++..+++|++|||++|. ||+++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F  156 (168)
T d2atva1          81 DITDRGSFEEVLPLKNILDEIKK----PKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  156 (168)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHT----TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             ccCCccchhhhhhhccccccccc----ccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHH
Confidence            99999999999998877766653    5678999999999998888888889999999999999999999998 599999


Q ss_pred             HHHHHHHhcc
Q psy8700         166 AELLNLEKNR  175 (200)
Q Consensus       166 ~~i~~~~~~~  175 (200)
                      ..|.+.+..+
T Consensus       157 ~~l~~~i~~~  166 (168)
T d2atva1         157 YELCREVRRR  166 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999977544

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-36  Score=207.19  Aligned_cols=161  Identities=34%  Similarity=0.468  Sum_probs=146.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|++|||||||+++|..+.+...+.|+.+ .........++..+.+.+||++|+..+..+...++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999998888888887 44456777788889999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|++++++++.+..|+..+....      ++.|+++|+||+|+.+.+++...+...+++..+++|+++||++|.||+++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~------~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f  155 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV------GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF  155 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH------CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             EeccchhhhhhcccccccccccC------CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHH
Confidence            99999999999999998887766      568999999999998888888888899999999999999999999999999


Q ss_pred             HHHHHHHh
Q psy8700         166 AELLNLEK  173 (200)
Q Consensus       166 ~~i~~~~~  173 (200)
                      +.|.+.+.
T Consensus       156 ~~l~~~~l  163 (164)
T d1z2aa1         156 KYLAEKHL  163 (164)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-36  Score=206.32  Aligned_cols=163  Identities=31%  Similarity=0.482  Sum_probs=142.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|++|||||||++++..+.+.+.+.|+..... ......++..+.+.+||++|+..+..++..++.++|++++|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            47999999999999999999999999988999887555 45667788889999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      ||+++++++..+..|+..+....     ....|+++++||.|+.+.++++..+...+++..+++|++|||++|.||+++|
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~-----~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F  157 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRKML-----GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF  157 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHH-----GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred             EeCCchhHHHhhhhhhhhccccc-----ccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHH
Confidence            99999999999999998877766     3668999999999999888888899999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy8700         166 AELLNLEKN  174 (200)
Q Consensus       166 ~~i~~~~~~  174 (200)
                      ++|.+.+.+
T Consensus       158 ~~l~~~i~~  166 (167)
T d1z08a1         158 LDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999998754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-36  Score=206.89  Aligned_cols=163  Identities=32%  Similarity=0.418  Sum_probs=147.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccc-ceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|++|||||||+++|+.+.+...+.++.+. .....+..++..+.+.+|||||++.+..++..++++++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            589999999999999999999999988888877764 4456777888899999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|++++.++.....|+..+.+..     ....|+++|+||+|+.+..++...+...+++..++++++|||++|.||+++|
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~~-----~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f  159 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQYA-----SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF  159 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             eecccchhhhhhhhhhhhhcccc-----cccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHH
Confidence            99999999999999999887766     3678999999999998888888888899999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy8700         166 AELLNLEKN  174 (200)
Q Consensus       166 ~~i~~~~~~  174 (200)
                      .+|.+.+.+
T Consensus       160 ~~l~~~l~~  168 (171)
T d2ew1a1         160 LDLACRLIS  168 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999876643

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=204.49  Aligned_cols=164  Identities=42%  Similarity=0.773  Sum_probs=149.3

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .++||+++|++|||||||++++..+.+.+.+.++.+..+...+..++..+.+.+||++|+..+..++..++.+++++++|
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            36899999999999999999999999998999998877777778889999999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH-hCCcEEEecccCCCcHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM-WGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~~i~~~  164 (200)
                      ||++++.+++.+..|+..+.+...    .++.|+++|+||+|+.........+...+++. .+++|++|||++|.||+++
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~~~~----~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  157 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILRVKD----TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI  157 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC----CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred             eeccchhhhHhHHHHHHHHHHhcC----CCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHH
Confidence            999999999999999999888763    46789999999999988887777777777766 4689999999999999999


Q ss_pred             HHHHHHHHh
Q psy8700         165 FAELLNLEK  173 (200)
Q Consensus       165 ~~~i~~~~~  173 (200)
                      |++|.+.+.
T Consensus       158 F~~l~~~i~  166 (167)
T d1c1ya_         158 FYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998763

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=206.71  Aligned_cols=164  Identities=25%  Similarity=0.495  Sum_probs=145.8

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ...+||+++|++|||||||+++++.+.+...+.|+........+..++..+.+.+||++|++.+..++..++.++|++++
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~il   86 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   86 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeee
Confidence            55799999999999999999999999998999999887777777888889999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc------------ccccCHHHHHHHHHHhC-CcEE
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE------------NREVSAAEGEAEAKMWG-CHFM  151 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~  151 (200)
                      |||+++++++.....||....+..     .++.|+++|+||+|+.+            .+.+...+...+++..+ ++|+
T Consensus        87 v~d~t~~~Sf~~~~~~~~~~~~~~-----~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~  161 (185)
T d2atxa1          87 CFSVVNPASFQNVKEEWVPELKEY-----APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV  161 (185)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH-----STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred             ccccchHHHHHHHHHHHHHHHHhc-----CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEE
Confidence            999999999999888887776665     36789999999999865            24556677788888887 6999


Q ss_pred             EecccCCCcHHHHHHHHHHHHh
Q psy8700         152 ETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       152 ~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                      +|||++|.||+++|+.+++.+.
T Consensus       162 E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         162 ECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EecCCCCcCHHHHHHHHHHHHc
Confidence            9999999999999999988763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-35  Score=206.24  Aligned_cols=173  Identities=28%  Similarity=0.449  Sum_probs=154.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +=.+||+|+|++|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+|||||++++..++..+++++++++
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            34589999999999999999999999988888888876554 46677888999999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|.++++++.....++..+....     ....|+++|+||.|+.+.......+...++...+++|+++||++|.||.+
T Consensus        84 ~v~d~t~~~s~~~~~~~~~~~~~~~-----~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e  158 (194)
T d2bcgy1          84 IVYDVTDQESFNGVKMWLQEIDRYA-----TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVED  158 (194)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-----CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHH
T ss_pred             EEEeCcchhhhhhHhhhhhhhhhcc-----cCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHH
Confidence            9999999999999999999887766     47789999999999998888888888888999999999999999999999


Q ss_pred             HHHHHHHHHhccchhHHHh
Q psy8700         164 LFAELLNLEKNRNISLQLE  182 (200)
Q Consensus       164 ~~~~i~~~~~~~~~~~~~~  182 (200)
                      +|+.+.+.+.+......+.
T Consensus       159 ~f~~l~~~i~~~~~~~~~~  177 (194)
T d2bcgy1         159 AFLTMARQIKESMSQQNLN  177 (194)
T ss_dssp             HHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHhhhcccC
Confidence            9999999887666544444

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=203.62  Aligned_cols=161  Identities=34%  Similarity=0.519  Sum_probs=146.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      +||+++|++|||||||++++.++.+.+.+.++.+... ......++..+.+.+||++|++.+...+..++..++++++|+
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6999999999999999999999999888888876444 456667788899999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |++++.++..+..|+..+.....     +..|+++|+||.|+.+.......+...+++..+++|++|||++|.||+++|+
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~-----~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~  155 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERG-----SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR  155 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHT-----TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcC-----CCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888773     6789999999999988888888889999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy8700         167 ELLNLEK  173 (200)
Q Consensus       167 ~i~~~~~  173 (200)
                      +|.+.+.
T Consensus       156 ~i~~~l~  162 (164)
T d1yzqa1         156 RVAAALP  162 (164)
T ss_dssp             HHHHHSC
T ss_pred             HHHHhhC
Confidence            9998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-35  Score=202.51  Aligned_cols=161  Identities=30%  Similarity=0.412  Sum_probs=146.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|++|||||||+++++++.+...+.++....+ ......++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            48999999999999999999999998888887776444 46677888899999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|+++.+++.....|+..+.+..     ....|+++++||.|+.........++..+++..+++|++|||++|.||+++|
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f  158 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNLT-----NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF  158 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhhc-----cccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999888766     3678999999999998888878888899999999999999999999999999


Q ss_pred             HHHHHHH
Q psy8700         166 AELLNLE  172 (200)
Q Consensus       166 ~~i~~~~  172 (200)
                      +.|.+.+
T Consensus       159 ~~i~~~i  165 (166)
T d1z0fa1         159 LEAAKKI  165 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998865

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-35  Score=202.53  Aligned_cols=163  Identities=31%  Similarity=0.487  Sum_probs=147.8

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      +++||+++|.+|||||||+++|..+.+.+.+.++...... .....++....+.+||++|++.+..++..++..++++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            4689999999999999999999999998888888875554 455667777899999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |||+++++++..+..|+..+....     .+..|+++|+||.|+.+.+.....+...+++..+++|++|||++|.||+++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~  157 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHG-----PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININEL  157 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-----CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhcc-----CCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHH
Confidence            999999999999999998877766     477899999999999888888888899999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy8700         165 FAELLNLEK  173 (200)
Q Consensus       165 ~~~i~~~~~  173 (200)
                      |.+|.+.++
T Consensus       158 f~~l~~~i~  166 (167)
T d1z0ja1         158 FIEISRRIP  166 (167)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhCC
Confidence            999998763

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-35  Score=201.30  Aligned_cols=163  Identities=36%  Similarity=0.684  Sum_probs=148.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      ++||+++|++|||||||+++|+++.+...+.++.+..+.......+..+.+.+||++|.+.+...+..++..++++++|+
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~   82 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   82 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccceee
Confidence            59999999999999999999999999888888988777777778888999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELFA  166 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~~  166 (200)
                      |++++.++..+..|+..+.+...    .+..|+++|+||+|+.. +.....+...+++..+++|++|||++|.||+++|+
T Consensus        83 d~~~~~s~~~~~~~~~~i~~~~~----~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  157 (166)
T d1ctqa_          83 AINNTKSFEDIHQYREQIKRVKD----SDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY  157 (166)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHT----CSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHhcC----CCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHH
Confidence            99999999999999999888874    46789999999999854 45567778889999999999999999999999999


Q ss_pred             HHHHHHhc
Q psy8700         167 ELLNLEKN  174 (200)
Q Consensus       167 ~i~~~~~~  174 (200)
                      +|++.+.+
T Consensus       158 ~i~~~i~~  165 (166)
T d1ctqa_         158 TLVREIRQ  165 (166)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99988754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-35  Score=202.47  Aligned_cols=162  Identities=30%  Similarity=0.476  Sum_probs=143.8

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      ..||+++|++|||||||++++..+.+.+.+.|+.+.........++..+.+.+||++|++.+...+..++.++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            36999999999999999999999999888999988777777778889999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc------------cccCHHHHHHHHHHhCC-cEEEe
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN------------REVSAAEGEAEAKMWGC-HFMET  153 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~v  153 (200)
                      |+++++++..+..||.......     .++.|++||+||+|+.+.            ..+...+...+++..+. +|++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~-----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~  156 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC  156 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH-----STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             ccchhHHHHHHHHHHHHHHHHh-----CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEe
Confidence            9999999999988887777666     367899999999999643            34566677888888885 89999


Q ss_pred             cccCCCcHHHHHHHHHHHHh
Q psy8700         154 SAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~~  173 (200)
                      ||++|.||+++|+.+.+.+.
T Consensus       157 SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         157 SAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHh
Confidence            99999999999999998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=200.15  Aligned_cols=163  Identities=33%  Similarity=0.464  Sum_probs=147.9

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ..+||+++|++|||||||+++|..+.+.+.+.++.+..+. ......+..+.+.+||++|++.+..++..++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            3589999999999999999999999998888888876554 455667778999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      ++|.++++++..+..|+..+.+..     .++.|+++|+||+|+.+.+.++..+...++...+++|++|||++|.||+++
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~  159 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQA-----SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI  159 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhcc-----CCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHH
Confidence            999999999999999999887766     367999999999999988888888899999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy8700         165 FAELLNLEK  173 (200)
Q Consensus       165 ~~~i~~~~~  173 (200)
                      |+.|.+.+.
T Consensus       160 f~~l~~~i~  168 (170)
T d1r2qa_         160 FMAIAKKLP  168 (170)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHHHHh
Confidence            999998764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-35  Score=201.10  Aligned_cols=164  Identities=31%  Similarity=0.411  Sum_probs=148.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|.+|||||||++++..+.+.+.+.++..... ...+..++....+.+||+||++++..++..++..++++++|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            58999999999999999999999998888888877554 45566778889999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|.++++++..+..|+..+....     .+..|+++|+||+|+....+........+++..+++|++|||++|.||+++|
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f  159 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLA-----SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAF  159 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EecccchhHHHHhhhhccccccc-----CCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHH
Confidence            99999999999999999988776     3679999999999998888888888888999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q psy8700         166 AELLNLEKNR  175 (200)
Q Consensus       166 ~~i~~~~~~~  175 (200)
                      +++.+.+.++
T Consensus       160 ~~l~~~i~~~  169 (174)
T d2bmea1         160 VQCARKILNK  169 (174)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=200.79  Aligned_cols=163  Identities=34%  Similarity=0.467  Sum_probs=142.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+|+|++|||||||++++.++.+.+.+.++..... .......+..+.+.+||++|++.+..++..++..+|++++|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            37999999999999999999999998888777766444 45566677889999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|++++.++..+..|+..+....     ..+.|++||+||+|+...+.....+...+++..+++|++|||++|.||+++|
T Consensus        83 ~d~~~~~sf~~~~~~~~~~~~~~-----~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f  157 (173)
T d2a5ja1          83 YDITRRETFNHLTSWLEDARQHS-----SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF  157 (173)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EeecChHHHHhHHHHHHHHHHhC-----CCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence            99999999999999999888766     3678999999999998888888888999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy8700         166 AELLNLEKN  174 (200)
Q Consensus       166 ~~i~~~~~~  174 (200)
                      .+|.+.+.+
T Consensus       158 ~~i~~~i~~  166 (173)
T d2a5ja1         158 INTAKEIYR  166 (173)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999997754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=200.55  Aligned_cols=163  Identities=30%  Similarity=0.393  Sum_probs=142.6

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ..+||+++|++|||||||++++.++.+...+.++.... ....+..++..+.+.+||++|.+.+...+..++..++++++
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            45899999999999999999999999887777766633 35566778888999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |||.++++++.....|+..+.....     +..|+++|+||+|+.+...........+....+.+|++|||++|.|++++
T Consensus        83 v~d~~~~~S~~~~~~~~~~i~~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~  157 (175)
T d2f9la1          83 VYDIAKHLTYENVERWLKELRDHAD-----SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEA  157 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSC-----TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEECCCcccchhHHHHHHHHHHhcC-----CCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHH
Confidence            9999999999999999999887763     67899999999999887776777777888888999999999999999999


Q ss_pred             HHHHHHHHh
Q psy8700         165 FAELLNLEK  173 (200)
Q Consensus       165 ~~~i~~~~~  173 (200)
                      |+++.+.+.
T Consensus       158 f~~l~~~i~  166 (175)
T d2f9la1         158 FKNILTEIY  166 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998763

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=201.35  Aligned_cols=166  Identities=28%  Similarity=0.478  Sum_probs=144.9

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ++..+||+++|++|||||||+++|+.+.+...+.++........+..++..+.+.+||++|++.+..++..++.++++++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            46789999999999999999999999999899999988777777888999999999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc------------ccCHHHHHHHHHHhC-CcE
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR------------EVSAAEGEAEAKMWG-CHF  150 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~  150 (200)
                      +|||+++++++..+..||....+..     ..+.|++||+||+|+.+++            .....+...+++..+ ++|
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~-----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  156 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  156 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH-----STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHh-----CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceE
Confidence            9999999999999988777666655     3678999999999986432            234456667777776 699


Q ss_pred             EEecccCCCcHHHHHHHHHHHHhc
Q psy8700         151 METSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       151 ~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      ++|||++|.||+++|+.+.+.+..
T Consensus       157 ~E~SAk~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         157 LECSALTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             EEcCCCCCcCHHHHHHHHHHHHcC
Confidence            999999999999999999987754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.5e-35  Score=201.17  Aligned_cols=165  Identities=33%  Similarity=0.509  Sum_probs=119.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ..+||+++|.+|||||||+++|+++.+...+.++.+.. ....+..++..+.+.+|||||++.+..++..+++.++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            35899999999999999999999988877777777643 45677788888999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|++++.++..+..|+..+....     ..+.|+++|+||.|+.........++...+...+++|++|||++|.||.++
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  159 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIEEHA-----SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENA  159 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-----CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred             EEECCChhhHHHHHHHHHHhhhhc-----cCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999998887666     477999999999999887777777788888899999999999999999999


Q ss_pred             HHHHHHHHhcc
Q psy8700         165 FAELLNLEKNR  175 (200)
Q Consensus       165 ~~~i~~~~~~~  175 (200)
                      |++|.+.+.++
T Consensus       160 f~~l~~~i~~k  170 (173)
T d2fu5c1         160 FFTLARDIKAK  170 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988554

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=194.82  Aligned_cols=163  Identities=32%  Similarity=0.507  Sum_probs=136.2

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCC-Ccccc-eeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIP-TIEDT-YRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ..+||+++|++|||||||+++++.+.+...+.+ +.+.. ....+..++..+.+.+|||+|++.+..++..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            468999999999999999999999887555444 34433 3456777888899999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      +|+|++++.++..+..|+..+.....     ...|+++|+||.|+.+.......++..+++..+++|+++||++|.||++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e  159 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQ-----HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL  159 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-----TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             EEecCCcccchhhhhhhhhhhhhccC-----CCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence            99999999999999999988877763     6689999999999998888888888899999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy8700         164 LFAELLNLEK  173 (200)
Q Consensus       164 ~~~~i~~~~~  173 (200)
                      +|++|.+.+.
T Consensus       160 ~f~~l~~~i~  169 (170)
T d2g6ba1         160 AFTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHcC
Confidence            9999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-34  Score=195.52  Aligned_cols=162  Identities=35%  Similarity=0.504  Sum_probs=145.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ..+||+++|++|||||||++++.++.+.+.+.++.+..+ ...+..++..+.+.+||++|++.+..++..++.++|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            368999999999999999999999999888888887544 4577788889999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc---cccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN---REVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      |||++++.++..+..|+.......     ....|+++++||.|+.+.   +++...+...+++..+++|+++||++|.||
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV  156 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQA-----SKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENV  156 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-----CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred             EEeCCcccchhhhhhhhhhhcccc-----ccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCH
Confidence            999999999999999998777766     367899999999998643   566778889999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy8700         162 KELFAELLNLE  172 (200)
Q Consensus       162 ~~~~~~i~~~~  172 (200)
                      +++|+.|.+.+
T Consensus       157 ~e~F~~i~~~i  167 (170)
T d1ek0a_         157 NDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.5e-34  Score=196.78  Aligned_cols=163  Identities=26%  Similarity=0.421  Sum_probs=143.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      .+||+++|++|||||||+++++.+.+.+.+.|+...........++..+.+.+||++|++.+...+..++.++|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            47999999999999999999999999989999988777777788899999999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc------------ccccCHHHHHHHHHHhCC-cEEEe
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE------------NREVSAAEGEAEAKMWGC-HFMET  153 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~v  153 (200)
                      |++++++++.+..||........     ++.|+++|+||.|+..            ...++..+...+++..+. +|++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~-----~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~  156 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  156 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHC-----TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             ecccCCCHHHHHHHHHHHHhccC-----CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEE
Confidence            99999999999988877766663     6789999999999864            244667778888888775 89999


Q ss_pred             cccCCCc-HHHHHHHHHHHHhc
Q psy8700         154 SAKTNHN-VKELFAELLNLEKN  174 (200)
Q Consensus       154 Sa~~~~~-i~~~~~~i~~~~~~  174 (200)
                      ||++|.| ++++|+.+.+.+..
T Consensus       157 SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         157 SALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eCCCCCcCHHHHHHHHHHHHhc
Confidence            9999985 99999999987754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-35  Score=203.45  Aligned_cols=160  Identities=24%  Similarity=0.394  Sum_probs=135.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+++|++|||||||+++++.+.+...+.||.+ .........++..+.+.+||++|+..+..++..++.+++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            48999999999999999999999998888888887 44456667788889999999999999889999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      ||+++++++..+..|+..+....      ++.|+++|+||+|+......  .+...++...+++|++|||++|.||+++|
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~------~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  154 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC------ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPF  154 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH------CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHH
T ss_pred             cccccccccchhHHHHHHHhhcc------CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999998887765      56899999999999765533  34456677788999999999999999999


Q ss_pred             HHHHHHHhc
Q psy8700         166 AELLNLEKN  174 (200)
Q Consensus       166 ~~i~~~~~~  174 (200)
                      ++|.+.+..
T Consensus       155 ~~l~~~l~~  163 (170)
T d1i2ma_         155 LWLARKLIG  163 (170)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcc
Confidence            999987753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-33  Score=193.90  Aligned_cols=170  Identities=27%  Similarity=0.431  Sum_probs=130.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEE-E-eCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVI-S-CNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +-+||+++|++|||||||++++.++.+.+.+.++.+....... . .+.....+.+||++|++.+...+..+++.+++++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            3589999999999999999999999988888887765544333 2 3344578999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc-cCHHHHHHHHHHhC-CcEEEecccCCCcH
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENRE-VSAAEGEAEAKMWG-CHFMETSAKTNHNV  161 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~-~~~~~vSa~~~~~i  161 (200)
                      +++|++++.++..+..|+..+....... .....|++|++||+|+.+... ....+...+++..+ ++|++|||++|.||
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv  159 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVN-SPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINV  159 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCS-CTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSH
T ss_pred             EEeecccccccchhhhcchhhhhhhhhc-ccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCH
Confidence            9999999999999999998887765421 345789999999999986543 56667778887776 69999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q psy8700         162 KELFAELLNLEKNRN  176 (200)
Q Consensus       162 ~~~~~~i~~~~~~~~  176 (200)
                      +++|++|.+.+.+++
T Consensus       160 ~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         160 DTAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999776543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-33  Score=192.99  Aligned_cols=167  Identities=35%  Similarity=0.512  Sum_probs=138.8

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCC-ChhhHhhccccCCEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQ-FPAMQRLSISKGHAF   82 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~~   82 (200)
                      +.+||+++|++|+|||||++++.+..+.. ...++.. ..+...+.+++..+.+.+||+++... ...+...++.++|++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~   81 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence            56999999999999999999999876532 2333333 55667788889999999999876432 123667789999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++|||++++.++..+..|+..+.....    .++.|++||+||+|+.+.+++...++..++...+++|++|||++|.||+
T Consensus        82 ilvfd~t~~~s~~~~~~~~~~i~~~~~----~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~  157 (172)
T d2g3ya1          82 LIVYSITDRASFEKASELRIQLRRARQ----TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK  157 (172)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTSGG----GTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             eeeecccccchhhhhhhhhhhhhhccc----cCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHH
Confidence            999999999999999999988876552    4679999999999998888888888889999999999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q psy8700         163 ELFAELLNLEKNRN  176 (200)
Q Consensus       163 ~~~~~i~~~~~~~~  176 (200)
                      ++|+.|++.+..++
T Consensus       158 ~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         158 ELFEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcc
Confidence            99999999876543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=202.11  Aligned_cols=166  Identities=27%  Similarity=0.456  Sum_probs=141.6

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeC----------CcEEEEEEEeCCCCCCChhhHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCN----------KNICTLQITDTTGSHQFPAMQRL   74 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~D~~G~~~~~~~~~~   74 (200)
                      ..+||+++|++|||||||+++|+++.+...+.++....+ ...+..+          +..+.+.+|||+|++.+..++..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            358999999999999999999999888777777766443 2333222          23468999999999999999999


Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEec
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETS  154 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS  154 (200)
                      ++.+++++++|||++++.++..+..|+..+....    .....|++||+||.|+.+.+++...+...+++..+++|+++|
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~S  159 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA----YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS  159 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC----TTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred             HHhcCCEEEEEEeccccccceeeeeccchhhhhc----cCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEe
Confidence            9999999999999999999999988886554433    356789999999999998888888889999999999999999


Q ss_pred             ccCCCcHHHHHHHHHHHHhcc
Q psy8700         155 AKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~~~~  175 (200)
                      |++|.||+++|++|.+.+.++
T Consensus       160 ak~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         160 AATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999987544

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-33  Score=193.50  Aligned_cols=163  Identities=34%  Similarity=0.546  Sum_probs=139.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      -+||+++|++|||||||+++++.+.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999888888888555 46777888899999999999999999999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKELF  165 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~~  165 (200)
                      +|.++++++..+..|+.......     ....|++++++|.|+.. ......+...++...+++|++|||++|.||+++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f  155 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHA-----NDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF  155 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-----CTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccc-----cCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHH
Confidence            99999999999999998888777     36789999999999854 4445677888889999999999999999999999


Q ss_pred             HHHHHHHhcc
Q psy8700         166 AELLNLEKNR  175 (200)
Q Consensus       166 ~~i~~~~~~~  175 (200)
                      ++|.+.+.++
T Consensus       156 ~~l~~~i~~k  165 (166)
T d1g16a_         156 FTLAKLIQEK  165 (166)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999987543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-32  Score=188.70  Aligned_cols=169  Identities=30%  Similarity=0.435  Sum_probs=142.3

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAF   82 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   82 (200)
                      +++.+||+|+|++|||||||++++..+.+.+.+.++.+... ......++..+.+.+||++|..........++..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            45678999999999999999999999998888888877554 45666678889999999999999999999999999999


Q ss_pred             EEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC-CcEEEecccCCCcH
Q psy8700          83 ILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG-CHFMETSAKTNHNV  161 (200)
Q Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~~i  161 (200)
                      ++++|.+++.++..+..|...+....... .....|+++|+||.|+.+ +++...+...+++..+ ++|++|||++|.||
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI  160 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVK-EPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNV  160 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCS-CTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccc-cCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCH
Confidence            99999999999999999998887765422 245689999999999854 5667778888888764 79999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy8700         162 KELFAELLNLEKN  174 (200)
Q Consensus       162 ~~~~~~i~~~~~~  174 (200)
                      +++|+++.+.+..
T Consensus       161 ~e~f~~l~~~il~  173 (174)
T d1wmsa_         161 AAAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-33  Score=192.62  Aligned_cols=166  Identities=34%  Similarity=0.450  Sum_probs=145.5

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      +.+||+++|++|||||||+++|.++.+...+.++..... ...+..++..+.+.+|||||++++..++..++..++++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999998888777776444 4566778888999999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      |+|++++.++.....|+..+.....    ....|+++++||.|.. .+.+...+...+++..+++|+++||++|.||+++
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~  160 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETYCT----RNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCA  160 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCS----CSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEECCCccccccchhhhhhhccccc----ccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999988766542    4668999999999974 4566778888899999999999999999999999


Q ss_pred             HHHHHHHHhccc
Q psy8700         165 FAELLNLEKNRN  176 (200)
Q Consensus       165 ~~~i~~~~~~~~  176 (200)
                      |+++.+.+.++.
T Consensus       161 f~~l~~~l~~~p  172 (177)
T d1x3sa1         161 FEELVEKIIQTP  172 (177)
T ss_dssp             HHHHHHHHHTSG
T ss_pred             HHHHHHHHccCc
Confidence            999999887653

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.2e-33  Score=192.94  Aligned_cols=173  Identities=23%  Similarity=0.394  Sum_probs=143.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      .+||+|+|.+|||||||+++++++.+...+.++.+..+ .......+..+.+.+||++|...+...+..++..+++++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            37999999999999999999999999888888886444 45667788889999999999999889999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH-HHhCCcEEEecccCCCcHHHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA-KMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      +|.+++.++..+..|+..+....... .....|+++|+||+|+.+.. ....+...+. ...++++++|||++|.||.++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ip~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPR-DPENFPFVVLGNKIDLENRQ-VATKRAQAWCYSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCS-SGGGSCEEEEEECTTSSCCC-SCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccc-cccCCCEEEEEEeecccccc-hhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHH
Confidence            99999999999999998887765321 23457999999999986644 4455555554 456789999999999999999


Q ss_pred             HHHHHHHHhccchhHHH
Q psy8700         165 FAELLNLEKNRNISLQL  181 (200)
Q Consensus       165 ~~~i~~~~~~~~~~~~~  181 (200)
                      |+++.+.+.++....+.
T Consensus       160 f~~l~~~i~~~~~~~~~  176 (184)
T d1vg8a_         160 FQTIARNALKQETEVEL  176 (184)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccc
Confidence            99999987666554443

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-32  Score=187.14  Aligned_cols=158  Identities=29%  Similarity=0.445  Sum_probs=138.8

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccce-eEEEEeCCcEEEEEEEeCCCCCCChh-hHhhccccCCEEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCNKNICTLQITDTTGSHQFPA-MQRLSISKGHAFIL   84 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~   84 (200)
                      .+||+++|++|||||||++++..+.+...+.++.+... ............+.+||++|...+.. .+..++.++|++++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            58999999999999999999999999888888887555 45666788889999999999776544 46678999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC---CCcH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT---NHNV  161 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~---~~~i  161 (200)
                      |||+++++++..+..|+..+.....    .++.|++||+||+|+.+.++++..+...+++.++++|++|||++   +.||
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V  157 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLL----ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV  157 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCC----CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhcc----CCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCH
Confidence            9999999999999999998887663    46789999999999998888888889999999999999999987   4599


Q ss_pred             HHHHHHH
Q psy8700         162 KELFAEL  168 (200)
Q Consensus       162 ~~~~~~i  168 (200)
                      +++|++|
T Consensus       158 ~e~F~~l  164 (165)
T d1z06a1         158 EAIFMTL  164 (165)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999876

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-32  Score=186.56  Aligned_cols=167  Identities=23%  Similarity=0.334  Sum_probs=136.3

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +.+||+++|++|||||||++++.++.+.. +.++....+...+.+++..+.+.+|||+|+..+     .+++.+|++++|
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            47999999999999999999999988744 456666666777788999999999999998764     367889999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc--ccccCHHHHHHHHH-HhCCcEEEecccCCCcHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETE--NREVSAAEGEAEAK-MWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~~i~  162 (200)
                      ||++++.++..+..|...+......  .....|+++|+||.|+..  .+.+...+...++. ..+++|++|||++|.|++
T Consensus        78 fd~~~~~Sf~~~~~~~~~i~~~~~~--~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~  155 (175)
T d2bmja1          78 FSLEDENSFQAVSRLHGQLSSLRGE--GRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVD  155 (175)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC----CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHH
T ss_pred             eecccchhhhhhHHHHHHHHHHhhc--ccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHH
Confidence            9999999999999999888776532  236679999999888743  45566667777754 456799999999999999


Q ss_pred             HHHHHHHHHHhccchhHH
Q psy8700         163 ELFAELLNLEKNRNISLQ  180 (200)
Q Consensus       163 ~~~~~i~~~~~~~~~~~~  180 (200)
                      ++|..+.+.+.......+
T Consensus       156 ~~F~~l~~~i~~~~~~~~  173 (175)
T d2bmja1         156 RVFQEVAQKVVTLRKQQQ  173 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcc
Confidence            999999998866655443

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=2.3e-32  Score=187.26  Aligned_cols=159  Identities=19%  Similarity=0.272  Sum_probs=127.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      ++||+++|++|||||||+++|..+.+.+.+.||.+..+.. +  +...+.+.+||+||+..+...+..++..++++++|+
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~-~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   78 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-I--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV   78 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-E--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee-e--eeeeEEEEEeeccccccccccccccccccchhhccc
Confidence            6899999999999999999999999888888877654432 2  234568999999999999999999999999999999


Q ss_pred             eCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH---HHHHHHHhCCcEEEecccCCCcHHH
Q psy8700          87 SCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE---GEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      |+++++++.....++..+.....    .++.|++||+||.|+.+........   ........+++++++||++|.|+.+
T Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~----~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1          79 DAADQEKIEASKNELHNLLDKPQ----LQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGG----GTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             ccccccccchhhhhhhhhhhhhc----ccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            99999999999988887766542    5779999999999987544321111   1111122345799999999999999


Q ss_pred             HHHHHHHHH
Q psy8700         164 LFAELLNLE  172 (200)
Q Consensus       164 ~~~~i~~~~  172 (200)
                      +|++|++.+
T Consensus       155 ~~~~l~~~~  163 (164)
T d1zd9a1         155 TLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHcc
Confidence            999998854

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=4.5e-31  Score=182.75  Aligned_cols=162  Identities=17%  Similarity=0.219  Sum_probs=123.7

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCE
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHA   81 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   81 (200)
                      ++++.++||+++|++|||||||+++|.++.+...+ ++.+ .....+.  ...+.+.+||++|.+.+...+..++..+|+
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~-~~~~~i~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG-FNIKSVQ--SQGFKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETT-EEEEEEE--ETTEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeee-eeEEEec--cCCeeEeEeeccccccchhHHHHHhhccce
Confidence            45678899999999999999999999987764322 2222 2222332  334689999999999999999999999999


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHH---HHHHHhCCcEEEecccCC
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGE---AEAKMWGCHFMETSAKTN  158 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~vSa~~~  158 (200)
                      +++|+|++++.++.....++..+....    .....|++|++||+|+.+..+.......   .......+++++|||++|
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~~~~----~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  162 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELLEEE----KLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG  162 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCG----GGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             eEEeeccccccchhhhhhhhhhhhhhh----ccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            999999999999999888887665544    2467899999999999765432111110   111223457999999999


Q ss_pred             CcHHHHHHHHHHH
Q psy8700         159 HNVKELFAELLNL  171 (200)
Q Consensus       159 ~~i~~~~~~i~~~  171 (200)
                      .|++++|++|.+.
T Consensus       163 ~gv~e~~~~l~~~  175 (176)
T d1fzqa_         163 EGVQDGMNWVCKN  175 (176)
T ss_dssp             TTHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=1.9e-30  Score=177.78  Aligned_cols=161  Identities=17%  Similarity=0.233  Sum_probs=123.3

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +++||+++|++|||||||+++|.+..+ ..+.|+.+.. ...+  +...+.+.+||+||++.++..+..++..+++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~-~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFN-IKTL--EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEE-EEEE--EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeee-eeec--cccccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            468999999999999999999988765 3445554422 2223  33457899999999998888999999999999999


Q ss_pred             eeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH---HHhCCcEEEecccCCCcHH
Q psy8700          86 YSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA---KMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus        86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~vSa~~~~~i~  162 (200)
                      +|+++..++.....+|.......    ...+.|++||+||.|+.+.............   ...++++++|||++|.|+.
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  152 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEE----RLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  152 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             eecccchhHHHHHHhhhhhhhhc----ccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHH
Confidence            99999999988888886655433    2467899999999999765543222111111   1223478999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy8700         163 ELFAELLNLEKN  174 (200)
Q Consensus       163 ~~~~~i~~~~~~  174 (200)
                      ++|++|.+.+..
T Consensus       153 e~~~~l~~~i~~  164 (165)
T d1ksha_         153 PGIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            999999998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=2.4e-31  Score=185.16  Aligned_cols=164  Identities=19%  Similarity=0.276  Sum_probs=121.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      +.+++||+++|++|||||||++++....+.. ..|+.+.... ..  ....+.+.+||+||++.+...+..++..+++++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~-~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   89 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVE-TL--SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVI   89 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEE-EE--EETTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEE-EE--eeCCEEEEEEecccccccchhHHhhhccceeEE
Confidence            5678999999999999999999998776533 3344443322 22  234578999999999999999999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH---HHHHHHHhCCcEEEecccCCCc
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE---GEAEAKMWGCHFMETSAKTNHN  160 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~vSa~~~~~  160 (200)
                      +|+|++++.++.....|+.......    ...+.|++||+||+|+.+........   ........++++++|||++|.|
T Consensus        90 ~v~d~~d~~s~~~~~~~l~~~~~~~----~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          90 FVVDSTDKDRMSTASKELHLMLQEE----ELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSS----TTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEeeecccccchhHHHHHHHHHHhh----ccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            9999999999999888876654433    25678999999999996543211111   1111122345799999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q psy8700         161 VKELFAELLNLEKNR  175 (200)
Q Consensus       161 i~~~~~~i~~~~~~~  175 (200)
                      ++++|++|.+.+.++
T Consensus       166 v~e~~~~l~~~i~~~  180 (182)
T d1moza_         166 ITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999988654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=7.2e-31  Score=181.27  Aligned_cols=160  Identities=17%  Similarity=0.270  Sum_probs=121.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      ..++||+++|++|||||||++++..+.+... .++.+.. .  .......+.+.+||+||...+...+..++..++++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~-~--~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN-V--ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEE-E--EEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeee-E--EEeeccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            5679999999999999999999988765332 2222221 1  2223345789999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH---HHHHHHHhCCcEEEecccCCCcH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE---GEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      |+|+++.+++..+..|+.......    ...+.|++|++||+|+.+........   ........++++++|||++|+||
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~----~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv  161 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDR----EMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL  161 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSG----GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEecccchhHHHHHHHHHHHhhhc----ccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCH
Confidence            999999999999998887766544    24678999999999997543221111   11112223457999999999999


Q ss_pred             HHHHHHHHHHH
Q psy8700         162 KELFAELLNLE  172 (200)
Q Consensus       162 ~~~~~~i~~~~  172 (200)
                      .++|++|.+.+
T Consensus       162 ~e~~~~l~~~~  172 (173)
T d1e0sa_         162 YEGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=9.4e-29  Score=168.13  Aligned_cols=156  Identities=16%  Similarity=0.210  Sum_probs=123.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEee
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   87 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   87 (200)
                      +||+++|++|||||||++++.++.+...+......    ....+...+.+.+||++|...+......++..++++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            58999999999999999999988775544333322    22334566799999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH---HHHHHHHhCCcEEEecccCCCcHHHH
Q psy8700          88 CTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE---GEAEAKMWGCHFMETSAKTNHNVKEL  164 (200)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~vSa~~~~~i~~~  164 (200)
                      ..++.++.....++..+....    .....|+++++||.|+.+........   ...+.+..+++++++||++|.||+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~  152 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAED----ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG  152 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred             ecChHHHHHHHHHHHHHHHhh----cccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHH
Confidence            999999999888887776555    25678999999999987644322111   11122334568999999999999999


Q ss_pred             HHHHHHH
Q psy8700         165 FAELLNL  171 (200)
Q Consensus       165 ~~~i~~~  171 (200)
                      |++|.+.
T Consensus       153 ~~~l~~~  159 (160)
T d1r8sa_         153 LDWLSNQ  159 (160)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9999875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=160.17  Aligned_cols=159  Identities=17%  Similarity=0.204  Sum_probs=116.4

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      .+++||+|+|.+|||||||++++.++.+.... ++.. ........  ....+.+||+++.+........++..++++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~-~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG-SNVEEIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSC-SSCEEEEE--TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccc-eeEEEEee--cceEEEEeccccccccccchhhhhccceeeee
Confidence            56799999999999999999999998774332 2222 12222222  34689999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHH----HHHhCCcEEEecccCCCc
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAE----AKMWGCHFMETSAKTNHN  160 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSa~~~~~  160 (200)
                      ++|.++..++.....++.......    .....|+++|+||.|+......... ...+    ....+++++++||++|.|
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~----~~~~~p~iiv~nK~Dl~~~~~~~~i-~~~~~~~~~~~~~~~~~~~Sa~tg~G  163 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHE----DLRKAGLLIFANKQDVKECMTVAEI-SQFLKLTSIKDHQWHIQACCALTGEG  163 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSG----GGTTCEEEEEEECTTSTTCCCHHHH-HHHHTGGGCCSSCEEEEECBTTTTBT
T ss_pred             ecccccccchhhhhhhhhhhhhcc----cccceEEEEEEEcccccccCcHHHH-HHHHHHHhhHhcCCEEEEEeCCCCCC
Confidence            999999998888776665555444    2467899999999998765432111 1111    122345799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy8700         161 VKELFAELLNLE  172 (200)
Q Consensus       161 i~~~~~~i~~~~  172 (200)
                      ++++|++|.+.+
T Consensus       164 i~e~~~~L~~~l  175 (177)
T d1zj6a1         164 LCQGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.94  E-value=4.4e-26  Score=155.92  Aligned_cols=163  Identities=22%  Similarity=0.282  Sum_probs=122.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEE
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL   84 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   84 (200)
                      +.++||+++|++|||||||+++++++.+... .++... .....  ......+.+||.+|...+.......+...+++++
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGF-NVETV--TYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSE-EEEEE--EETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccce-eeeee--ccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            3579999999999999999999999877443 222221 12222  2334689999999999999999999999999999


Q ss_pred             EeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH---HHHHHHHhCCcEEEecccCCCcH
Q psy8700          85 VYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE---GEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      ++|+.+..+......++.......    .....|+++++||.|+.+........   ...++...+++|+++||++|.||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv  154 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEE----ELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGL  154 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCG----GGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTH
T ss_pred             hhhhhhcchhhhccchhhhhhhhh----ccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999998888777777665554443    25678999999999997644321111   11122334568999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q psy8700         162 KELFAELLNLEKNR  175 (200)
Q Consensus       162 ~~~~~~i~~~~~~~  175 (200)
                      +++|++|.+.+.++
T Consensus       155 ~e~~~~l~~~l~~k  168 (169)
T d1upta_         155 DEAMEWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999988654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.3e-25  Score=155.25  Aligned_cols=159  Identities=22%  Similarity=0.235  Sum_probs=107.0

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCC--CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh--------hhHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP--------AMQRL   74 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~   74 (200)
                      ...-+|+|+|.+|||||||+|+|++.....  ....+............  ...+.+|||||.....        .....
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeee--eeeeeecccccccccccccchhccccccc
Confidence            344579999999999999999999875421  12222222222333333  3479999999976532        22334


Q ss_pred             ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC-CcEEEe
Q psy8700          75 SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG-CHFMET  153 (200)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~v  153 (200)
                      ++.++|++++|+|++++..... ..+...+.. .     ..+.|+++|+||+|+....+   .....+....+ ..++++
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~-~-----~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~i  150 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED-ELVARALKP-L-----VGKVPILLVGNKLDAAKYPE---EAMKAYHELLPEAEPRML  150 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGG-G-----TTTSCEEEEEECGGGCSSHH---HHHHHHHHTSTTSEEEEC
T ss_pred             ccccccceeeeechhhhhcccc-cchhhheec-c-----ccchhhhhhhcccccccCHH---HHHHHHHhhcccCceEEE
Confidence            5778999999999988654332 333333332 2     25689999999999865432   22233334444 478999


Q ss_pred             cccCCCcHHHHHHHHHHHHhcc
Q psy8700         154 SAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ||++|.|+++++++|.+.+.+.
T Consensus       151 SA~~~~gi~~L~~~i~~~lpe~  172 (178)
T d1wf3a1         151 SALDERQVAELKADLLALMPEG  172 (178)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCBC
T ss_pred             ecCCCCCHHHHHHHHHHhCCCC
Confidence            9999999999999999988653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.4e-24  Score=147.75  Aligned_cols=154  Identities=15%  Similarity=0.204  Sum_probs=116.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSC   88 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   88 (200)
                      ||+++|++|||||||+++|.++.+. .+.|+...... ..  ........+||++|...+......++..++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE-EL--AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE-EE--CCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE-Ee--ccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            8999999999999999999998764 34444443322 22  33345789999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHH----------HHHHhCCcEEEecccCC
Q psy8700          89 TSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEA----------EAKMWGCHFMETSAKTN  158 (200)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------~~~~~~~~~~~vSa~~~  158 (200)
                      ++...+.....++.......    ...+.|+++++||.|+.............          ......+++++|||++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  153 (166)
T d2qtvb1          78 ADPERFDEARVELDALFNIA----ELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR  153 (166)
T ss_dssp             TCGGGHHHHHHHHHHHHTCT----TTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTT
T ss_pred             cchhhhhhhhHHHHhhhhhh----ccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCC
Confidence            99999888888876665544    35778999999999986643221111000          01122346999999999


Q ss_pred             CcHHHHHHHHHH
Q psy8700         159 HNVKELFAELLN  170 (200)
Q Consensus       159 ~~i~~~~~~i~~  170 (200)
                      +|++++|+||.+
T Consensus       154 ~Gv~e~~~~l~~  165 (166)
T d2qtvb1         154 NGYLEAFQWLSQ  165 (166)
T ss_dssp             BSHHHHHHHHTT
T ss_pred             CCHHHHHHHHhC
Confidence            999999999865

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.8e-25  Score=152.04  Aligned_cols=149  Identities=24%  Similarity=0.259  Sum_probs=106.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCC-CcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCCh--------hhHhhccc
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFP--------AMQRLSIS   77 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~   77 (200)
                      +||+++|++|||||||+|+|++..... ...+... ..........  ...+.+||+||.....        .....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID--GMPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET--TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeecc--CceeeeccccccccccccchhHHHHHHHHHHH
Confidence            799999999999999999999866432 2222222 2222333333  3578899999965432        22344567


Q ss_pred             cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC
Q psy8700          78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT  157 (200)
Q Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  157 (200)
                      .+|++++++|..+.........|...+....      ...|+++|+||+|+.+.....       ....+.+++++||++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~------~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~  146 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLP------AKLPITVVRNKADITGETLGM-------SEVNGHALIRLSART  146 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSC------TTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTT
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcc------cccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCC
Confidence            8999999999998877766665555554433      468999999999986543211       113456899999999


Q ss_pred             CCcHHHHHHHHHHH
Q psy8700         158 NHNVKELFAELLNL  171 (200)
Q Consensus       158 ~~~i~~~~~~i~~~  171 (200)
                      |.||++++++|.+.
T Consensus       147 ~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         147 GEGVDVLRNHLKQS  160 (161)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=2.9e-24  Score=148.69  Aligned_cols=161  Identities=17%  Similarity=0.130  Sum_probs=103.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC-------hhhHhhccccCCE
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF-------PAMQRLSISKGHA   81 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~~~   81 (200)
                      .|+++|.+|||||||+|+|++........+..................+++|||||....       .......+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            499999999999999999987654222222221111222223333447899999995432       1233345678899


Q ss_pred             EEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700          82 FILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                      +++++|..... ......+...+.....   .....|+++|+||+|+.+..+.  ..........+.+++.+||++|.|+
T Consensus        83 ~~~~~d~~~~~-~~~~~~~~~~~~~~~~---~~~~~p~iiv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~iSA~tg~gi  156 (180)
T d1udxa2          83 LLYVLDAADEP-LKTLETLRKEVGAYDP---ALLRRPSLVALNKVDLLEEEAV--KALADALAREGLAVLPVSALTGAGL  156 (180)
T ss_dssp             EEEEEETTSCH-HHHHHHHHHHHHHHCH---HHHHSCEEEEEECCTTSCHHHH--HHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred             hhhhccccccc-ccchhhhhhhhhcccc---ccchhhhhhhhhhhhhhhHHHH--HHHHHHHHhcCCeEEEEEcCCCCCH
Confidence            99999986532 2333333322222110   0134799999999999775432  2233444456789999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q psy8700         162 KELFAELLNLEKNR  175 (200)
Q Consensus       162 ~~~~~~i~~~~~~~  175 (200)
                      +++++.|.+.+...
T Consensus       157 d~L~~~i~~~l~~~  170 (180)
T d1udxa2         157 PALKEALHALVRST  170 (180)
T ss_dssp             HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999988543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.7e-25  Score=155.44  Aligned_cols=161  Identities=15%  Similarity=0.109  Sum_probs=118.1

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +++||+++|..|||||||++++..+.+  .+.||.+....   .+....+.+++||++|++.+...+..++..+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEY---PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEE---EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEE---EEeccceeeeeccccccccccccccccccccceeeEe
Confidence            478999999999999999999988776  46788764432   2334557899999999999999999999999999999


Q ss_pred             eeCCChh-----------HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc----------------CHHH
Q psy8700          86 YSCTSRQ-----------SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV----------------SAAE  138 (200)
Q Consensus        86 ~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----------------~~~~  138 (200)
                      +|.++..           ..+....|...+....     ..+.|+++++||.|+...+..                ....
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~-----~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPW-----FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQA  150 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG-----GSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhh-----ccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHH
Confidence            9998753           2334444444444333     477899999999998532211                1111


Q ss_pred             HHHHHH--H--------hCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         139 GEAEAK--M--------WGCHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       139 ~~~~~~--~--------~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      ...+..  .        ..+.++++||++|.||.++|+.+.+.+.+.+
T Consensus       151 ~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         151 AREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            122111  1        1234789999999999999999998886544

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=5.4e-25  Score=153.99  Aligned_cols=158  Identities=18%  Similarity=0.136  Sum_probs=111.5

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +++||+++|..|||||||+++|..+.++..+.        .+..++.....+++||++|++.+..++..++..++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~--------~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGI--------VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSE--------EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccE--------EEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            47899999999999999999998765532221        1233344567899999999999999999999999999999


Q ss_pred             eeCCChhHHH----------HHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc---------------ccCHHHHH
Q psy8700          86 YSCTSRQSLE----------ELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR---------------EVSAAEGE  140 (200)
Q Consensus        86 ~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---------------~~~~~~~~  140 (200)
                      +|+++..++.          ....+|..+....    .....|+++++||.|+....               .....+..
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~----~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNK----WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAA  148 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCG----GGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhccc----ccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHH
Confidence            9998876552          2233333333222    24678999999999963211               11111111


Q ss_pred             HHH--HH---------hCCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         141 AEA--KM---------WGCHFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       141 ~~~--~~---------~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ...  ..         ..+.+++|||+++.||+++|+.+.+.+.++
T Consensus       149 ~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         149 AYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            111  11         123577899999999999999999877544

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=2.5e-24  Score=147.83  Aligned_cols=157  Identities=18%  Similarity=0.217  Sum_probs=101.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC---------hhhHhhccc
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF---------PAMQRLSIS   77 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~~   77 (200)
                      .|+++|++|||||||+|+|++....  .....++.......  .......+.+||++|....         ......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDT--VEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEE--EEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccccc--ccccccccccccccceeeeeccccccccccccccccc
Confidence            6999999999999999999975532  11122222222222  2334457999999995321         233444567


Q ss_pred             cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccC
Q psy8700          78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKT  157 (200)
Q Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  157 (200)
                      .+|+++++.+.+....... ..++..+....        .|+++|+||+|+.+..+  .....++.+....+++++||++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~~--------~pviiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~i~iSAk~  148 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKST--------VDTILVANKAENLREFE--REVKPELYSLGFGEPIPVSAEH  148 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHHT--------CCEEEEEESCCSHHHHH--HHTHHHHGGGSSCSCEECBTTT
T ss_pred             cCcEEEEeecccccccccc-ccccccccccc--------ccccccchhhhhhhhhh--hHHHHHHHhcCCCCeEEEecCC
Confidence            8999999999877654433 44444444433        69999999999865332  1222222223334789999999


Q ss_pred             CCcHHHHHHHHHHHHhccchh
Q psy8700         158 NHNVKELFAELLNLEKNRNIS  178 (200)
Q Consensus       158 ~~~i~~~~~~i~~~~~~~~~~  178 (200)
                      |.|+++++++|.+.+.++..+
T Consensus       149 g~gid~L~~~i~~~l~e~~~~  169 (171)
T d1mkya1         149 NINLDTMLETIIKKLEEKGLD  169 (171)
T ss_dssp             TBSHHHHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHhCCCCCCC
Confidence            999999999999988776543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=7.8e-23  Score=142.04  Aligned_cols=163  Identities=18%  Similarity=0.158  Sum_probs=106.0

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCC--CCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCC------------
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQ------------   67 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~------------   67 (200)
                      |+-+..+||+++|.+|||||||+|+|++....  ..+..+...........++.  .+.++|+||...            
T Consensus         3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~   80 (186)
T d1mkya2           3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKY   80 (186)
T ss_dssp             CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCS
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccc
Confidence            34456799999999999999999999986531  22222222222233444444  688899999532            


Q ss_pred             ChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH--
Q psy8700          68 FPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM--  145 (200)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--  145 (200)
                      ........+..+|++++|+|+..+..... ..+...+..        ...|+++|+||+|+....+....+.......  
T Consensus        81 ~~~~~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~--------~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~  151 (186)
T d1mkya2          81 SNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER--------RGRASVVVFNKWDLVVHREKRYDEFTKLFREKL  151 (186)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH--------TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC
T ss_pred             hhHHHHHHHhcCCEEEEeecccccchhhH-HHHHHHHHH--------cCCceeeeccchhhhcchhhhhhhHHHHHHHHh
Confidence            23445556678999999999986543222 333333433        3379999999999876554333322222221  


Q ss_pred             --h-CCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         146 --W-GCHFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       146 --~-~~~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                        . ..+++++||++|.|++++++.|.+.+.++
T Consensus       152 ~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         152 YFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             GGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cccCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence              2 34899999999999999999998877654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.91  E-value=7.7e-24  Score=146.80  Aligned_cols=159  Identities=16%  Similarity=0.230  Sum_probs=111.9

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   83 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   83 (200)
                      ..+..||+++|++|||||||+++|.++.+... .++..... ..+..++  ..+.+||+.+...+......++...++++
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTS-EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC-EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccce-eEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            45789999999999999999999998876543 33333222 2233333  46889999999998889999999999999


Q ss_pred             EEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHH-----------------Hh
Q psy8700          84 LVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAK-----------------MW  146 (200)
Q Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~  146 (200)
                      +++|..+.........++.......    ...+.|+++++||.|++.....  ........                 ..
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~----~~~~~~~li~~~K~D~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~  159 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDE----TIANVPILILGNKIDRPEAISE--ERLREMFGLYGQTTGKGSVSLKELNAR  159 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCG----GGTTSCEEEEEECTTSTTCCCH--HHHHHHHTCTTTCCCSSCCCTTTCCSC
T ss_pred             eeeeccCccchHHHHHHHHHhhccc----ccCCCceEEEEeccCccccCCH--HHHHHHHhhcccchhhhhhhHHHhhcC
Confidence            9999999988887776665555433    2577999999999998654322  22121111                 11


Q ss_pred             CCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         147 GCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       147 ~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      ++++++|||++|+|++++|+||.+.+
T Consensus       160 ~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         160 PLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            23589999999999999999998754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=4.8e-24  Score=147.43  Aligned_cols=161  Identities=16%  Similarity=0.139  Sum_probs=106.4

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee------EEEEeCCcEEEEEEEeCCCCCCChhhHhhccccC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR------QVISCNKNICTLQITDTTGSHQFPAMQRLSISKG   79 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   79 (200)
                      +.++|+++|.++||||||+|+|++...............+      ...........+.++|+||+..+.......+..+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~   83 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII   83 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence            4679999999999999999999864322111111101000      0111112335788999999888888888889999


Q ss_pred             CEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH--HHHHH-HHH---hCCcEEEe
Q psy8700          80 HAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA--EGEAE-AKM---WGCHFMET  153 (200)
Q Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~~~~~-~~~---~~~~~~~v  153 (200)
                      |++++++|+.++...+. ...+..+..        .+.|+++|+||+|+.+..+....  ..... ...   .+.+++++
T Consensus        84 d~~ilv~d~~~g~~~~~-~~~~~~~~~--------~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~i  154 (179)
T d1wb1a4          84 DLALIVVDAKEGPKTQT-GEHMLILDH--------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI  154 (179)
T ss_dssp             CEEEEEEETTTCSCHHH-HHHHHHHHH--------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred             cccccccccccccchhh-hhhhhhhhh--------cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEE
Confidence            99999999998654333 333433333        33799999999999765432211  11111 111   23589999


Q ss_pred             cccCCCcHHHHHHHHHHHHhcc
Q psy8700         154 SAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       154 Sa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ||++|.|++++++.|.+.+.+.
T Consensus       155 SA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         155 SAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHS
T ss_pred             EccCCcCHHHHHHHHHhcCCcc
Confidence            9999999999999999988653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.7e-23  Score=141.98  Aligned_cols=147  Identities=22%  Similarity=0.258  Sum_probs=98.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCC--------C-hhhHhhcc
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQ--------F-PAMQRLSI   76 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~--------~-~~~~~~~~   76 (200)
                      +||+++|.+|||||||+|+|++.... ....+... ..........+  ..+.+|||||...        . .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            69999999999999999999976532 12222222 22233333343  4788999999432        1 12233346


Q ss_pred             ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEeccc
Q psy8700          77 SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAK  156 (200)
Q Consensus        77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~  156 (200)
                      ..+|++++|+|.+++........+     ...      ...++++++||.|+.+....  .+ .......+.+++++||+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-----~~~------~~~~~i~~~~k~d~~~~~~~--~~-~~~~~~~~~~~~~vSA~  144 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-----ERI------KNKRYLVVINKVDVVEKINE--EE-IKNKLGTDRHMVKISAL  144 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-----HHH------TTSSEEEEEEECSSCCCCCH--HH-HHHHHTCSTTEEEEEGG
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-----hhc------ccccceeeeeeccccchhhh--HH-HHHHhCCCCcEEEEECC
Confidence            789999999999988765443222     112      33689999999999765432  11 22222344689999999


Q ss_pred             CCCcHHHHHHHHHH
Q psy8700         157 TNHNVKELFAELLN  170 (200)
Q Consensus       157 ~~~~i~~~~~~i~~  170 (200)
                      +|.||+++++.|.+
T Consensus       145 ~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         145 KGEGLEKLEESIYR  158 (160)
T ss_dssp             GTCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999999875

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=3.4e-24  Score=148.92  Aligned_cols=160  Identities=21%  Similarity=0.151  Sum_probs=97.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcccceeEEEEeCCcEEEEEEEeCCCC----CCChh---hHhhccccC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCNKNICTLQITDTTGS----HQFPA---MQRLSISKG   79 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----~~~~~---~~~~~~~~~   79 (200)
                      ..|+++|++|||||||+|+|++...... +.+++........... ....+++|||||.    .....   .....+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEec-CCcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            3699999999999999999987654222 2222222112222222 1236889999994    22111   222334568


Q ss_pred             CEEEEEeeCCChhHHHHHHH--HHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH--hCCcEEEecc
Q psy8700          80 HAFILVYSCTSRQSLEELRP--IWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM--WGCHFMETSA  155 (200)
Q Consensus        80 ~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~vSa  155 (200)
                      +.++++++....+.......  ++.......  .....+.|+++|+||+|+.+..+    ....+...  .+.+++.+||
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~kp~ivv~NK~Dl~~~~~----~~~~~~~~~~~~~~v~~iSA  154 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEY--NLRLTERPQIIVANKMDMPEAAE----NLEAFKEKLTDDYPVFPISA  154 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHS--CSSTTTSCBCBEEECTTSTTHHH----HHHHHHHHCCSCCCBCCCSS
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchh--hhhccCCcchhhccccchHhHHH----HHHHHHHHhccCCcEEEEEC
Confidence            88888887664432222222  222222222  11345689999999999976432    11222222  3568999999


Q ss_pred             cCCCcHHHHHHHHHHHHhc
Q psy8700         156 KTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       156 ~~~~~i~~~~~~i~~~~~~  174 (200)
                      ++|.|++++++.|.+.+.+
T Consensus       155 ~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         155 VTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             CCSSTTHHHHHHHHHHHTS
T ss_pred             CCCCCHHHHHHHHHHhhhh
Confidence            9999999999999998754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.8e-23  Score=146.89  Aligned_cols=161  Identities=17%  Similarity=0.169  Sum_probs=108.3

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEE
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   85 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   85 (200)
                      +.+||+++|++|||||||++++.   +.+.+.||.+...   ..++.....+++||++|++.+...+..+++.+++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~---~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE---EEEEETTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE---EEEeeeeeeeeeecccceeeecccccccccccceeEEE
Confidence            36899999999999999999993   4456777776332   22344567899999999999999999999999999999


Q ss_pred             eeCCChh----------HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccc----------------ccCHHHH
Q psy8700          86 YSCTSRQ----------SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENR----------------EVSAAEG  139 (200)
Q Consensus        86 ~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------------~~~~~~~  139 (200)
                      ++.++..          .+.....++..+....    ...+.|+++++||.|+.+..                .......
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~  150 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR----VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDV  150 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG----GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhCh----hhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHH
Confidence            9998743          2344444444444333    24678999999999985321                0111222


Q ss_pred             HHHHHH-----------hCCcEEEecccCCCcHHHHHHHHHHHHhccc
Q psy8700         140 EAEAKM-----------WGCHFMETSAKTNHNVKELFAELLNLEKNRN  176 (200)
Q Consensus       140 ~~~~~~-----------~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~  176 (200)
                      ..+...           ..+.+++|||+++.||+++|+.+.+.+.+++
T Consensus       151 ~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         151 QKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            222111           1234667999999999999999988775543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=1.1e-22  Score=141.02  Aligned_cols=151  Identities=21%  Similarity=0.297  Sum_probs=95.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC---------------hhhHh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF---------------PAMQR   73 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---------------~~~~~   73 (200)
                      .|+++|.+|||||||+|+|++........|...   +........  .+.+|||||....               .....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T---~~~~~~~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT---RKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT---TSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEe---ecccccccc--cceecccCCceeccccccccccccchhhhhhhh
Confidence            699999999999999999998765332222221   111112222  3678999995311               11223


Q ss_pred             hccccCCEEEEEeeCCChhHHHHHH----------HHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHH
Q psy8700          74 LSISKGHAFILVYSCTSRQSLEELR----------PIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEA  143 (200)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  143 (200)
                      ..++.+|++++++|...+.......          ..+..+..        ...|+++|+||+|+.+..+..   ...+.
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--------~~~p~iiv~NK~D~~~~~~~~---~~~~~  145 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--------LDIPTIVAVNKLDKIKNVQEV---INFLA  145 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--------TTCCEEEEEECGGGCSCHHHH---HHHHH
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--------cCCCEEEEEeeeehhhhHHHH---HHHHH
Confidence            3456789999999987543322211          11222222        348999999999986543211   11111


Q ss_pred             HHhC-------CcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         144 KMWG-------CHFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       144 ~~~~-------~~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ....       ..++++||++|.|++++++.|.+.+.++
T Consensus       146 ~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         146 EKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             HHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             HHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence            1211       2488999999999999999999988764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.87  E-value=3.5e-22  Score=139.74  Aligned_cols=162  Identities=12%  Similarity=0.069  Sum_probs=106.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcC-----CCcccceeE--EE------------------EeCCcEEEEE
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYI-----PTIEDTYRQ--VI------------------SCNKNICTLQ   58 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~-----~~~~~~~~~--~~------------------~~~~~~~~~~   58 (200)
                      +.+.++|+++|..++|||||+++|++........     .+....+..  ..                  ........+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            4567899999999999999999998632211100     000000000  00                  0111235789


Q ss_pred             EEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHH
Q psy8700          59 ITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAE  138 (200)
Q Consensus        59 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  138 (200)
                      ++||||+..|.......+..+|++++++|+.++.........+..+....       ..++++++||+|+.+........
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~-------~~~iiv~inK~D~~d~~~~~~~~  154 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-------QKNIIIAQNKIELVDKEKALENY  154 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-------CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc-------CccceeeeecccchhhHHHHHHH
Confidence            99999999988888888889999999999988643333444444444433       24688899999987654322111


Q ss_pred             --HHHHHHHh---CCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         139 --GEAEAKMW---GCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       139 --~~~~~~~~---~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                        ...+....   .++++++||++|.|++++++.|.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         155 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence              11222211   25899999999999999999998865

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.86  E-value=1.2e-21  Score=138.07  Aligned_cols=166  Identities=17%  Similarity=0.084  Sum_probs=106.2

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCC-----cCCC-cccceeEEE------------------------EeC
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRES-----YIPT-IEDTYRQVI------------------------SCN   51 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-----~~~~-~~~~~~~~~------------------------~~~   51 (200)
                      |...+.++|+++|..++|||||+++|++......     ...+ .........                        ...
T Consensus         3 ~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (205)
T d2qn6a3           3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP   82 (205)
T ss_dssp             CCCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCC
T ss_pred             CCCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccc
Confidence            3445568999999999999999999986321100     0000 000000000                        001


Q ss_pred             CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700          52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN  131 (200)
Q Consensus        52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  131 (200)
                      .....+.++|+||+..|.......+..+|++++|+|+.++-.....+..+..+....       ..|++|++||+|+.+.
T Consensus        83 ~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~-------i~~iIV~vNK~Dl~~~  155 (205)
T d2qn6a3          83 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-------VKNLIIVQNKVDVVSK  155 (205)
T ss_dssp             EEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT-------CCCEEEEEECGGGSCH
T ss_pred             cceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC-------CceeeeccccCCCccc
Confidence            122478999999999988888888889999999999988632223333333333322       2588999999999765


Q ss_pred             cccCHHH--HHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHhc
Q psy8700         132 REVSAAE--GEAEAKM---WGCHFMETSAKTNHNVKELFAELLNLEKN  174 (200)
Q Consensus       132 ~~~~~~~--~~~~~~~---~~~~~~~vSa~~~~~i~~~~~~i~~~~~~  174 (200)
                      .+.....  ...+...   .+++++++||++|.||+++++.|.+++++
T Consensus       156 ~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         156 EEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             hHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            4322211  1111111   13589999999999999999999887653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=1.8e-21  Score=139.08  Aligned_cols=155  Identities=18%  Similarity=0.207  Sum_probs=101.4

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCCcCCCccc--ceeE---------------EEEeCCcEEEEEEEeCCCCCCChhhH
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED--TYRQ---------------VISCNKNICTLQITDTTGSHQFPAMQ   72 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~---------------~~~~~~~~~~~~~~D~~G~~~~~~~~   72 (200)
                      |+++|.+++|||||+++|++.............  ....               ...++.....+.++||||+..+....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            999999999999999999874321111100000  0000               00112334578999999999988888


Q ss_pred             hhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH---------------
Q psy8700          73 RLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA---------------  137 (200)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---------------  137 (200)
                      ...+..+|++++|+|+.++-.... ...+..+...        +.|++|++||+|+.+.......               
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~--------~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~  158 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRMY--------RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ  158 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT--------TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhcC--------CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHH
Confidence            888889999999999987654433 3444444443        3799999999998754321100               


Q ss_pred             -----HHHHHHH---H--------------h-CCcEEEecccCCCcHHHHHHHHHHHHh
Q psy8700         138 -----EGEAEAK---M--------------W-GCHFMETSAKTNHNVKELFAELLNLEK  173 (200)
Q Consensus       138 -----~~~~~~~---~--------------~-~~~~~~vSa~~~~~i~~~~~~i~~~~~  173 (200)
                           .......   .              . ..+++++||.+|.|++++++.|.....
T Consensus       159 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                 0000000   0              0 136899999999999999999988664

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=3e-21  Score=134.94  Aligned_cols=155  Identities=14%  Similarity=0.142  Sum_probs=92.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCccccee-EEEEeCCcEEEEEEEeCCCCCCC---h----------h
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCNKNICTLQITDTTGSHQF---P----------A   70 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~~---~----------~   70 (200)
                      ++-.+|+++|.+|||||||+|+|++........+....+.. .......   ...+.|++|....   .          .
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~   97 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHh
Confidence            33459999999999999999999975431111111111111 1122222   2445666663221   1          1


Q ss_pred             hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHH----h
Q psy8700          71 MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKM----W  146 (200)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~  146 (200)
                      .....+..++++++++|+..+.... ...+++.+...        ..|+++|+||+|+.+..+.... .......    .
T Consensus        98 ~~~~~~~~~~~vi~viD~~~~~~~~-~~~~~~~l~~~--------~~piivv~NK~D~~~~~~~~~~-~~~~~~~l~~~~  167 (195)
T d1svia_          98 TYITTREELKAVVQIVDLRHAPSND-DVQMYEFLKYY--------GIPVIVIATKADKIPKGKWDKH-AKVVRQTLNIDP  167 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHHT--------TCCEEEEEECGGGSCGGGHHHH-HHHHHHHHTCCT
T ss_pred             hhhccccchhhhhhhhhcccccccc-ccccccccccc--------cCcceechhhccccCHHHHHHH-HHHHHHHhcccC
Confidence            2223444679999999987654322 23444444432        3799999999998765443222 2222222    3


Q ss_pred             CCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         147 GCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       147 ~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      ..+++.+||++|.|+++++++|.+.+
T Consensus       168 ~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         168 EDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            45799999999999999999999876

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=8.6e-21  Score=133.81  Aligned_cols=120  Identities=18%  Similarity=0.259  Sum_probs=86.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCCh-hhHhhccccCCEEEEEee
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFP-AMQRLSISKGHAFILVYS   87 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~~i~v~d   87 (200)
                      +|+++|++|||||||+++|+++.+...+ ++...........+...+.+.+||++|++.++ ..+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            6999999999999999999998875543 44443333333334556789999999988764 566778899999999999


Q ss_pred             CCChhH-HHHHHHHHHH-HHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700          88 CTSRQS-LEELRPIWEV-IRETKGGANELASIPIMLVGNKCDETENR  132 (200)
Q Consensus        88 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  132 (200)
                      +++..+ +.....++.. +.....   .....|++|++||+|+++..
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~---~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMA---LKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHT---STTCCEEEEEEECTTSTTCC
T ss_pred             cccccccHHHHHHHHHHHHHhHHH---hhcCCcEEEEEECcccCCCC
Confidence            998765 3444444433 333332   23557999999999997644

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=3.7e-21  Score=136.95  Aligned_cols=158  Identities=18%  Similarity=0.217  Sum_probs=110.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEe
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   86 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   86 (200)
                      .+||+++|+.|||||||++++..+.+    .||.+.. ...+..+  .+.+++||++|+..++..+..++..++++++++
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~-~~~~~~~--~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~   78 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF-ETKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV   78 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE-EEEEEET--TEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEE
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE-EEEEEEC--cEEEEEEecCccceeccchhhhcccccceEEEE
Confidence            58999999999999999999976443    4566532 2233333  468999999999999999999999999999999


Q ss_pred             eCCChh----------HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc----C-----------------
Q psy8700          87 SCTSRQ----------SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV----S-----------------  135 (200)
Q Consensus        87 d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~-----------------  135 (200)
                      |.++.+          .+.+...+|..+....    ...+.|++|++||+|+.+.+..    .                 
T Consensus        79 d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~----~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~  154 (221)
T d1azta2          79 ASSSYNMVIREDNQTNRLQEALNLFKSIWNNR----WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDA  154 (221)
T ss_dssp             ETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCG----GGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTC
T ss_pred             EccccccccccccchHHHHHHHHHHHHHhcCh----hhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccc
Confidence            988532          2333334444444333    2467999999999998543210    0                 


Q ss_pred             ---------HHHHHH-----HHHHh--------CCcEEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         136 ---------AAEGEA-----EAKMW--------GCHFMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       136 ---------~~~~~~-----~~~~~--------~~~~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                               ...+..     +....        .+..+++||.++.||+.+|+.+.+.+...
T Consensus       155 ~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         155 TPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             cccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                     111111     11111        12356799999999999999988777544

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=3.7e-20  Score=127.53  Aligned_cols=159  Identities=18%  Similarity=0.142  Sum_probs=99.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCCcccc-eeEEEEeCCcEEEEEEEeCCCCCCChh---------hHhhc
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDT-YRQVISCNKNICTLQITDTTGSHQFPA---------MQRLS   75 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~---------~~~~~   75 (200)
                      --.|+++|.+|||||||+|+|++...... ..+..... .......+  ...+..+|++|......         .....
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecC--CceeEeecCCCceecchhhhhhhhhhccccc
Confidence            35689999999999999999998764322 22222222 22222222  23667788888543211         11112


Q ss_pred             cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhC-CcEEEec
Q psy8700          76 ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWG-CHFMETS  154 (200)
Q Consensus        76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vS  154 (200)
                      ...+++++++.|..+..  .....++..+..        ...|.++++||+|...................+ .+++++|
T Consensus        83 ~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~--------~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vS  152 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWT--PDDEMVLNKLRE--------GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPIS  152 (179)
T ss_dssp             CCCEEEEEEEEETTCCC--HHHHHHHHHHHS--------SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred             hhhcceeEEEEecCccc--hhHHHHHHHhhh--------ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEe
Confidence            33567777888866533  222233333332        346899999999987654433333333444444 4899999


Q ss_pred             ccCCCcHHHHHHHHHHHHhccch
Q psy8700         155 AKTNHNVKELFAELLNLEKNRNI  177 (200)
Q Consensus       155 a~~~~~i~~~~~~i~~~~~~~~~  177 (200)
                      |++|.|++++++.|.+.+++...
T Consensus       153 A~~g~gi~~L~~~i~~~lpe~~~  175 (179)
T d1egaa1         153 AETGLNVDTIAAIVRKHLPEATH  175 (179)
T ss_dssp             TTTTTTHHHHHHHHHTTCCBCCC
T ss_pred             CcCCCCHHHHHHHHHHhCCCCCC
Confidence            99999999999999998866543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.80  E-value=5.6e-20  Score=127.95  Aligned_cols=158  Identities=16%  Similarity=0.120  Sum_probs=104.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC-----CCCC------cCC-Ccc-cc--eeEEEEeCCcEEEEEEEeCCCCCCChhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGT-----FRES------YIP-TIE-DT--YRQVISCNKNICTLQITDTTGSHQFPAM   71 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~-----~~~~------~~~-~~~-~~--~~~~~~~~~~~~~~~~~D~~G~~~~~~~   71 (200)
                      .++|+++|..++|||||+++|+...     ....      ..+ ... +.  ......+......+.++||||+..|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            5899999999999999999997411     0000      000 000 11  1123344455568999999999988888


Q ss_pred             HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCH---HHHHHHHHHhC-
Q psy8700          72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSA---AEGEAEAKMWG-  147 (200)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~-  147 (200)
                      ....+..+|++++|+|+.++..-+. ...+..+....       ..|++|++||+|+....+...   .+...+....+ 
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~~-------~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~  154 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMPQT-REHLLLARQIG-------VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY  154 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHTT-------CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHhc-------CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCC
Confidence            8888899999999999998755443 33343343322       258899999999875432211   11222222222 


Q ss_pred             ----CcEEEecccCC----------CcHHHHHHHHHHHH
Q psy8700         148 ----CHFMETSAKTN----------HNVKELFAELLNLE  172 (200)
Q Consensus       148 ----~~~~~vSa~~~----------~~i~~~~~~i~~~~  172 (200)
                          ++++.+||+.|          .++.++++.|.+.+
T Consensus       155 ~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         155 KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence                57999999998          58899988887654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=1.4e-18  Score=121.73  Aligned_cols=143  Identities=17%  Similarity=0.148  Sum_probs=90.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC--------CCC----CcCCCc---ccce-eEEEEeCCcEEEEEEEeCCCCCCChh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGT--------FRE----SYIPTI---EDTY-RQVISCNKNICTLQITDTTGSHQFPA   70 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~--------~~~----~~~~~~---~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~   70 (200)
                      .++|+++|.+++|||||+++|+...        ...    .+.+..   +-+. .....+......+.|+||||+..|..
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~   82 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK   82 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHH
Confidence            5899999999999999999996310        000    000000   0000 12223333445889999999999999


Q ss_pred             hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCcccccCH---HHHHHHHHHh
Q psy8700          71 MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENREVSA---AEGEAEAKMW  146 (200)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~  146 (200)
                      .....+..+|++++|+|+.++...+. ...|..+....        .| ++|++||+|+.+..+...   .+...+....
T Consensus        83 ~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~~g--------i~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~  153 (204)
T d2c78a3          83 NMITGAAQMDGAILVVSAADGPMPQT-REHILLARQVG--------VPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY  153 (204)
T ss_dssp             HHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHTT--------CCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHcC--------CCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhc
Confidence            88889999999999999998766655 34444444433        44 778899999866332111   1112222222


Q ss_pred             C-----CcEEEecccCC
Q psy8700         147 G-----CHFMETSAKTN  158 (200)
Q Consensus       147 ~-----~~~~~vSa~~~  158 (200)
                      +     ++++.+|+..+
T Consensus       154 ~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         154 EFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             TSCTTTSCEEECCHHHH
T ss_pred             CCCcccceeeeeechhh
Confidence            2     46888887644

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2.9e-18  Score=118.48  Aligned_cols=161  Identities=10%  Similarity=0.037  Sum_probs=85.2

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcc-cceeEEEEeCCcEEEEEEEeCCCCCCCh-------hh---
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCNKNICTLQITDTTGSHQFP-------AM---   71 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~---   71 (200)
                      +.+..++|+++|.+|||||||+|+|++............ ...............+..++.++.....       ..   
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE   91 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhh
Confidence            467789999999999999999999988664322211111 1112222223332333333333322111       11   


Q ss_pred             HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHH--HHHHHHh--C
Q psy8700          72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEG--EAEAKMW--G  147 (200)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~--~~~~~~~--~  147 (200)
                      ..........++.+.+......... ..++..+..        ...++++++||+|+.+.........  .+.....  .
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~  162 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD--------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD  162 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH--------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred             hhhhhhheeEEEEeecccccchhHH-HHHHHHhhh--------ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCC
Confidence            1112223445555666555433222 233333333        3378999999999876543322111  1111112  2


Q ss_pred             CcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         148 CHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       148 ~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      .+++.+||++|.||+++++.|.+.+
T Consensus       163 ~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         163 VQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999998764

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.73  E-value=2.6e-17  Score=116.40  Aligned_cols=152  Identities=18%  Similarity=0.087  Sum_probs=96.7

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhC--CCCCC-----------------cCC-------------CcccceeEEEEeC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKG--TFRES-----------------YIP-------------TIEDTYRQVISCN   51 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~--~~~~~-----------------~~~-------------~~~~~~~~~~~~~   51 (200)
                      +...++|+++|..++|||||+.+|+..  .....                 ...             ...........+.
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            455689999999999999999999631  11100                 000             0000001122233


Q ss_pred             CcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc
Q psy8700          52 KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN  131 (200)
Q Consensus        52 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  131 (200)
                      .....+.++|+||+..+......-+..+|++++|+|+.++..-+.... +..+.. .+      -..+++++||+|+.+.
T Consensus        86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~-~~~~~~-~g------v~~iiv~vNK~D~~~~  157 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH-SYIASL-LG------IKHIVVAINKMDLNGF  157 (222)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH-HHHHHH-TT------CCEEEEEEECTTTTTS
T ss_pred             ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH-HHHHHH-cC------CCEEEEEEEccccccc
Confidence            344689999999999999888888999999999999998755544333 322332 21      1358899999999764


Q ss_pred             cccCHH----HHHHHHHHhC-----CcEEEecccCCCcHHH
Q psy8700         132 REVSAA----EGEAEAKMWG-----CHFMETSAKTNHNVKE  163 (200)
Q Consensus       132 ~~~~~~----~~~~~~~~~~-----~~~~~vSa~~~~~i~~  163 (200)
                      .+....    +...+....+     ++++++||++|+|+.+
T Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         158 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             cceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            321111    1222333333     3689999999998843

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.6e-17  Score=116.85  Aligned_cols=116  Identities=14%  Similarity=0.198  Sum_probs=77.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCChhhHhhcc----ccCCEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSI----SKGHAF   82 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~----~~~~~~   82 (200)
                      ..+|+++|++|||||||+|+|++..+.+.    .+.. .....+......+.+||+||+..+......++    ..++.+
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQ-EPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL   77 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCS-SCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEec-ceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence            45899999999999999999998765322    2111 11222333445789999999887665555443    345788


Q ss_pred             EEEeeCCC-hhHHHHHHHHH----HHHHHHhCCCCCCCCCcEEEEeeCCCCCccc
Q psy8700          83 ILVYSCTS-RQSLEELRPIW----EVIRETKGGANELASIPIMLVGNKCDETENR  132 (200)
Q Consensus        83 i~v~d~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  132 (200)
                      ++++|..+ ..++.....|+    ..+....     ....|+++|+||+|+.+..
T Consensus        78 i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          78 IFMVDSTVDPKKLTTTAEFLVDILSITESSC-----ENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEETTSCTTCCHHHHHHHHHHHHHHHHHS-----TTCCCEEEEEECTTSTTCC
T ss_pred             ceEEEEecccccHHHHHHHHHHHHHHHHHHH-----hccCCeEEEEEeecccccC
Confidence            88888664 44455544443    2333333     4678999999999997643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=1.4e-16  Score=115.50  Aligned_cols=112  Identities=17%  Similarity=0.221  Sum_probs=78.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC--CCCC----cCCCc----------c-cceeEEEEeCCcEEEEEEEeCCCCCCChhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGT--FRES----YIPTI----------E-DTYRQVISCNKNICTLQITDTTGSHQFPAM   71 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~--~~~~----~~~~~----------~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   71 (200)
                      +|+++|..++|||||+.+|+...  ....    ...+.          . ........+.-....+.++||||+..|...
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e   87 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIE   87 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHH
Confidence            59999999999999999996411  1100    00000          0 000111222233458999999999999999


Q ss_pred             HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      ....+.-+|++|+|+|+.++-..+. ...|....+.        +.|.++++||+|..
T Consensus        88 ~~~~l~~~D~avlVvda~~Gv~~~T-~~~w~~a~~~--------~lP~i~fINKmDr~  136 (276)
T d2bv3a2          88 VERSMRVLDGAIVVFDSSQGVEPQS-ETVWRQAEKY--------KVPRIAFANKMDKT  136 (276)
T ss_dssp             HHHHHHHCCEEEEEEETTTSSCHHH-HHHHHHHHTT--------TCCEEEEEECTTST
T ss_pred             HHHHHHhhhheEEeccccCCcchhH-HHHHHHHHHc--------CCCEEEEEeccccc
Confidence            9999999999999999998766555 4555555543        48999999999974

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.64  E-value=1.5e-15  Score=109.68  Aligned_cols=112  Identities=21%  Similarity=0.221  Sum_probs=77.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC--CCCC----cCCCc----------ccce-eEEEEeCCcEEEEEEEeCCCCCCChhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGT--FRES----YIPTI----------EDTY-RQVISCNKNICTLQITDTTGSHQFPAM   71 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~--~~~~----~~~~~----------~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~   71 (200)
                      +|+++|..++|||||+.+|+...  ....    ...+.          ..+. .....+.-...++.++||||+..+...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            59999999999999999996321  1000    00000          0011 111222223347899999999999999


Q ss_pred             HhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          72 QRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      ....+.-+|++++|+|+.++-..+. ...|..+.+..        .|.++++||+|..
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t-~~~~~~~~~~~--------~p~~i~iNk~D~~  132 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERLG--------LPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHTT--------CCEEEEEECGGGC
T ss_pred             hhhhhcccCceEEEeeccCCccchh-HHHHHhhhhcc--------ccccccccccccc
Confidence            9999999999999999998766555 44455555433        7999999999963

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.62  E-value=6.1e-16  Score=115.00  Aligned_cols=165  Identities=15%  Similarity=0.172  Sum_probs=97.1

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhC----CC----------CC-------------CcCCCcccceeEEEEe-----
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVKG----TF----------RE-------------SYIPTIEDTYRQVISC-----   50 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~~----~~----------~~-------------~~~~~~~~~~~~~~~~-----   50 (200)
                      ...+.++|++.|+||||||||+++|...    ..          ++             ......+..+......     
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~g  126 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG  126 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeecccccccccc
Confidence            4557899999999999999999998631    00          00             0000001111000000     


Q ss_pred             -------------CCcEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy8700          51 -------------NKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASI  117 (200)
Q Consensus        51 -------------~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (200)
                                   +-..+.+.|++|.|.-.-.   .....-+|..++|.....++..+.   ....+.+..+        
T Consensus       127 g~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~---~k~gilE~aD--------  192 (323)
T d2qm8a1         127 GVAAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQG---IKKGIFELAD--------  192 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC---------CCTTHHHHCS--------
T ss_pred             chhHHHHHHHHhhccCCCCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhh---hhhhHhhhhh--------
Confidence                         0022477888888843322   223345899999998887754443   3333344333        


Q ss_pred             cEEEEeeCCCCCcccccCHHHHHHHHHH----------hCCcEEEecccCCCcHHHHHHHHHHHHhccchhHHHhh
Q psy8700         118 PIMLVGNKCDETENREVSAAEGEAEAKM----------WGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEK  183 (200)
Q Consensus       118 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~~~~~  183 (200)
                        ++|+||+|+.+...........+...          +..+++.+||++|.|++++++.|.+...........+.
T Consensus       193 --i~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~G~l~~  266 (323)
T d2qm8a1         193 --MIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAG  266 (323)
T ss_dssp             --EEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             --eeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHCChHHH
Confidence              99999999876544332222222222          44689999999999999999999888765554444433

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=3.6e-15  Score=114.23  Aligned_cols=165  Identities=16%  Similarity=0.097  Sum_probs=94.0

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCC-cCCC-cccceeE-EEEeCCcEEEEEEEeCCCCCCCh-----hhHhhccc
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPT-IEDTYRQ-VISCNKNICTLQITDTTGSHQFP-----AMQRLSIS   77 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~~~-~~~~~~~-~~~~~~~~~~~~~~D~~G~~~~~-----~~~~~~~~   77 (200)
                      .+++|+++|.+|||||||+|+|.+...... ..++ ...++.. ..........+.+|||||.....     .+....+.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            579999999999999999999998543221 1111 1111111 11111122257899999954322     22333455


Q ss_pred             cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcc-------cccCHHHH--------HHH
Q psy8700          78 KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETEN-------REVSAAEG--------EAE  142 (200)
Q Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~--------~~~  142 (200)
                      .+|.++++.|..-.  -.+ ..++..+...        +.|+++|.||+|....       ........        ...
T Consensus       135 ~~d~~l~~~~~~~~--~~d-~~l~~~l~~~--------~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~  203 (400)
T d1tq4a_         135 EYDFFIIISATRFK--KND-IDIAKAISMM--------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT  203 (400)
T ss_dssp             GCSEEEEEESSCCC--HHH-HHHHHHHHHT--------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             cceEEEEecCCCCC--HHH-HHHHHHHHHc--------CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHH
Confidence            68888888764322  122 2334444443        3799999999996311       00111110        111


Q ss_pred             HHHhC---CcEEEecccC--CCcHHHHHHHHHHHHhccchhHHH
Q psy8700         143 AKMWG---CHFMETSAKT--NHNVKELFAELLNLEKNRNISLQL  181 (200)
Q Consensus       143 ~~~~~---~~~~~vSa~~--~~~i~~~~~~i~~~~~~~~~~~~~  181 (200)
                      ....+   .++|.+|...  ..++.++.+.+.+.+.+......+
T Consensus       204 l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~~~~~~  247 (400)
T d1tq4a_         204 FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFM  247 (400)
T ss_dssp             HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHHH
T ss_pred             HHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHHHHHHH
Confidence            12222   3688888754  358999999999988766554433

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=4e-16  Score=116.12  Aligned_cols=166  Identities=20%  Similarity=0.264  Sum_probs=92.5

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhh------CCC-----CCCc----------------CCCcccceeEEEE----e
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVK------GTF-----RESY----------------IPTIEDTYRQVIS----C   50 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~------~~~-----~~~~----------------~~~~~~~~~~~~~----~   50 (200)
                      ++..+.++|++.|+||||||||+++|..      .+.     ++..                ....+..+-....    .
T Consensus        49 ~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~l  128 (327)
T d2p67a1          49 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHL  128 (327)
T ss_dssp             GGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC----
T ss_pred             hccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccccc
Confidence            3456789999999999999999999963      111     0000                0001111100000    0


Q ss_pred             CC--------------cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCC
Q psy8700          51 NK--------------NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELAS  116 (200)
Q Consensus        51 ~~--------------~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (200)
                      .+              ..+.+.+++|.|.-.   .-..+...+|.+++|.+....+   .++.....+.+..+       
T Consensus       129 gg~~~~~~~~~~~~~~~g~d~iliEtvG~gq---~e~~i~~~aD~~l~v~~P~~Gd---~iq~~k~gi~e~aD-------  195 (327)
T d2p67a1         129 GGASQRARELMLLCEAAGYDVVIVETVGVGQ---SETEVARMVDCFISLQIAGGGD---DLQGIKKGLMEVAD-------  195 (327)
T ss_dssp             -CHHHHHHHHHHHHHHTTCSEEEEEEECCTT---HHHHHHTTCSEEEEEECC---------CCCCHHHHHHCS-------
T ss_pred             ccchhhhhHHHHHHHhcCCCeEEEeeccccc---cchhhhhccceEEEEecCCCch---hhhhhchhhhcccc-------
Confidence            00              112466777766322   1123555689999988665554   33333334444443       


Q ss_pred             CcEEEEeeCCCCCcccccCHHHH--HHHH-------HHhCCcEEEecccCCCcHHHHHHHHHHHHhccchhHHHhh
Q psy8700         117 IPIMLVGNKCDETENREVSAAEG--EAEA-------KMWGCHFMETSAKTNHNVKELFAELLNLEKNRNISLQLEK  183 (200)
Q Consensus       117 ~p~ivv~nK~Dl~~~~~~~~~~~--~~~~-------~~~~~~~~~vSa~~~~~i~~~~~~i~~~~~~~~~~~~~~~  183 (200)
                         ++|+||+|+...........  ....       ..+..+++.|||.+|.|++++++.|.++......+...+.
T Consensus       196 ---i~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~~sG~l~~  268 (327)
T d2p67a1         196 ---LIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASGRLQQ  268 (327)
T ss_dssp             ---EEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             ---EEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence               89999999876432211111  1111       1234579999999999999999999887765554444443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.59  E-value=6.3e-15  Score=106.54  Aligned_cols=126  Identities=17%  Similarity=0.108  Sum_probs=77.0

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCC--CcCCCcccceeEEEEeCCcEEEEEEEeCCCCCCC----h---hhHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCNKNICTLQITDTTGSHQF----P---AMQRL   74 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~---~~~~~   74 (200)
                      ...+++|+++|.+|+|||||+|++++.....  ...+++..........++  ..+.++||||....    .   .....
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHH
Confidence            3467999999999999999999999876432  122233333334444444  47999999995421    1   11111


Q ss_pred             --ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc
Q psy8700          75 --SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV  134 (200)
Q Consensus        75 --~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  134 (200)
                        .....++++||++++...--......+..+....+   ..--.+++||+||+|...+...
T Consensus       107 ~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg---~~~~~~~ivv~t~~D~~~~~~~  165 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFG---KGIWNKAIVALTHAQFSPPDGL  165 (257)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHC---GGGGGGEEEEEECCSCCCGGGC
T ss_pred             HHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcc---hhhhhCEEEEEECcccCCcCCC
Confidence              22346888899888754322222333444444442   1112589999999998765443

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.59  E-value=9.2e-15  Score=104.76  Aligned_cols=154  Identities=19%  Similarity=0.144  Sum_probs=82.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC--CCCC---------------------cCCC-ccccee------EEEEeCCcEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGT--FRES---------------------YIPT-IEDTYR------QVISCNKNICT   56 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~---------------------~~~~-~~~~~~------~~~~~~~~~~~   56 (200)
                      .++|+++|..++|||||+.+|+...  ....                     .... .....+      ....+......
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~  103 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR  103 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred             ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccce
Confidence            4689999999999999999995311  1000                     0000 000000      01112223457


Q ss_pred             EEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHH------HHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLE------ELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        57 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      +.+.||||+..+......-..-+|++++|+|+.++..-.      +....+..+....       -.++++++||+|+..
T Consensus       104 i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~-------i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         104 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG-------INHLVVVINKMDEPS  176 (245)
T ss_dssp             EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT-------CSSEEEEEECTTSTT
T ss_pred             eeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcC-------CCeEEEEEEcCCCCc
Confidence            999999999999988888889999999999998753221      2223332233222       235789999999864


Q ss_pred             ccccC----H--HHHH-HHHHHhC------CcEEEecccCCCcHHHHHHH
Q psy8700         131 NREVS----A--AEGE-AEAKMWG------CHFMETSAKTNHNVKELFAE  167 (200)
Q Consensus       131 ~~~~~----~--~~~~-~~~~~~~------~~~~~vSa~~~~~i~~~~~~  167 (200)
                      .....    .  .+.. .+....+      ++++++||++|+||.++++.
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence            32110    0  1111 1122222      47999999999999876543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.58  E-value=2.7e-15  Score=106.37  Aligned_cols=150  Identities=21%  Similarity=0.212  Sum_probs=92.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC--CCCC---------------------cCC------Ccccce-eEEEEeCCcEEE
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGT--FRES---------------------YIP------TIEDTY-RQVISCNKNICT   56 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~---------------------~~~------~~~~~~-~~~~~~~~~~~~   56 (200)
                      .++|+++|..++|||||+.+|+...  ....                     ...      ..+.+. .....++.....
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            5899999999999999999986311  0000                     000      000000 111223344568


Q ss_pred             EEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHH------HHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCc
Q psy8700          57 LQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLE------ELRPIWEVIRETKGGANELASIPIMLVGNKCDETE  130 (200)
Q Consensus        57 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  130 (200)
                      +.++||||+..|.......+.-+|++++|+|+.++....      +....+.... ..      ...++++++||+|+..
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~-~~------~~~~iIv~iNK~D~~~  155 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TM------GLDQLIVAVNKMDLTE  155 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HT------TCTTCEEEEECGGGSS
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHH-Hh------CCCceEEEEEcccCCC
Confidence            999999999999999999999999999999999864322      1222221122 12      2357889999999865


Q ss_pred             ccccCH------HHHHHHHHHhC-----CcEEEecccCCCcHHH
Q psy8700         131 NREVSA------AEGEAEAKMWG-----CHFMETSAKTNHNVKE  163 (200)
Q Consensus       131 ~~~~~~------~~~~~~~~~~~-----~~~~~vSa~~~~~i~~  163 (200)
                      ......      .....+....+     .+++++||..|.|+.+
T Consensus       156 ~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         156 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             ccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            321111      11122222222     3688999999998854

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.3e-14  Score=103.45  Aligned_cols=147  Identities=18%  Similarity=0.131  Sum_probs=93.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhC--CCCC-------------------------------CcCCCcccceeEEEEeCCc
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKG--TFRE-------------------------------SYIPTIEDTYRQVISCNKN   53 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~--~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   53 (200)
                      .++|+++|..++|||||+.+|+..  ...+                               ...-+..   .....+.-.
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~---~~~~~~~~~   82 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID---IALWKFETP   82 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCS---CSCEEEECS
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccc---cceeEeccC
Confidence            489999999999999999999631  1100                               0000111   111222334


Q ss_pred             EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHH------HHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSL------EELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      ..++.|+||||+..|......-+..+|++++|+|+.+....      .+....+.......       -.+++|++||+|
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~g-------v~~iiv~iNKmD  155 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLG-------VRQLIVAVNKMD  155 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTT-------CCEEEEEEECGG
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcC-------CCeEEEEEECCC
Confidence            46899999999999999999999999999999999876321      12233332233222       135788999999


Q ss_pred             CCcccccC----HHHHHHHHHHhC-----CcEEEecccCCCcHHH
Q psy8700         128 ETENREVS----AAEGEAEAKMWG-----CHFMETSAKTNHNVKE  163 (200)
Q Consensus       128 l~~~~~~~----~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~  163 (200)
                      +.+..+..    ..+...+....+     ++++.+|+..|.|+-+
T Consensus       156 ~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         156 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            87643211    112222333333     4689999999988644

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=4.1e-13  Score=99.94  Aligned_cols=116  Identities=18%  Similarity=0.216  Sum_probs=79.6

Q ss_pred             CCceE-EEEECCCCCCHHHHHHHHhhC--CCCC------CcCC----------CcccceeEEEE-------------eCC
Q psy8700           5 SNDYR-VVVFGAGGVGKSSLVLRFVKG--TFRE------SYIP----------TIEDTYRQVIS-------------CNK   52 (200)
Q Consensus         5 ~~~~k-i~~~G~~~~GKSsli~~l~~~--~~~~------~~~~----------~~~~~~~~~~~-------------~~~   52 (200)
                      ...+| |+++|..++|||||+.+|+..  ....      .+.-          +..........             .++
T Consensus        14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~   93 (341)
T d1n0ua2          14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   93 (341)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence            34564 999999999999999999731  1100      0000          00000000000             134


Q ss_pred             cEEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCC
Q psy8700          53 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDET  129 (200)
Q Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  129 (200)
                      ..+.+.++||||+..+.......++-+|++++|+|+.++-..+....| .....        .+.|+++++||+|..
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~-~~a~~--------~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALG--------ERIKPVVVINKVDRA  161 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHH--------TTCEEEEEEECHHHH
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHH-HHHHH--------cCCCeEEEEECcccc
Confidence            567899999999999999999999999999999999998766664443 33443        337999999999964

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.44  E-value=1.5e-13  Score=98.22  Aligned_cols=111  Identities=13%  Similarity=-0.055  Sum_probs=65.0

Q ss_pred             EEEEEEeCCCCCCChhhH---hhc--cccCCEEEEEeeCCC---hhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700          55 CTLQITDTTGSHQFPAMQ---RLS--ISKGHAFILVYSCTS---RQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC  126 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~---~~~--~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  126 (200)
                      ..+.+.|+||+..+....   ...  ....+.+++++|...   +.................       ..|.++++||+
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~ivvinK~  167 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL-------GATTIPALNKV  167 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH-------TSCEEEEECCG
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh-------CCCceeeeecc
Confidence            468899999976532211   111  223568888888753   333222221111122222       37899999999


Q ss_pred             CCCcccccCHHH---------H-----------------HHHHHH--hCCcEEEecccCCCcHHHHHHHHHHHH
Q psy8700         127 DETENREVSAAE---------G-----------------EAEAKM--WGCHFMETSAKTNHNVKELFAELLNLE  172 (200)
Q Consensus       127 Dl~~~~~~~~~~---------~-----------------~~~~~~--~~~~~~~vSa~~~~~i~~~~~~i~~~~  172 (200)
                      |+....+.....         .                 ......  ..++++++||++|+|+++++..|.+.+
T Consensus       168 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         168 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            987643211100         0                 000011  235899999999999999999988864

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.25  E-value=9.9e-11  Score=85.15  Aligned_cols=83  Identities=19%  Similarity=0.232  Sum_probs=52.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCCcccceeEEEEeCCc---------------EEEEEEEeCCCCCCChh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCNKN---------------ICTLQITDTTGSHQFPA   70 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~~   70 (200)
                      .+||+++|.|+||||||++++++.... .+|.-++-..-...+.+.+.               ...++++|+||.-.--+
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            579999999999999999999986543 22322322222223333221               13689999999654222


Q ss_pred             ----h---HhhccccCCEEEEEeeCC
Q psy8700          71 ----M---QRLSISKGHAFILVYSCT   89 (200)
Q Consensus        71 ----~---~~~~~~~~~~~i~v~d~~   89 (200)
                          +   -...++++|++++|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence                2   234566899999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=9.2e-10  Score=80.72  Aligned_cols=120  Identities=18%  Similarity=0.163  Sum_probs=71.4

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC-CCCcCCCcccceeEEEEe-----------CC---------------------
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTF-RESYIPTIEDTYRQVISC-----------NK---------------------   52 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~-----------~~---------------------   52 (200)
                      ...+|+|+|..++|||||+|+|++..+ +....+++.......+.-           .+                     
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            456899999999999999999998775 333333332221111100           00                     


Q ss_pred             ------------------cEEEEEEEeCCCCCCC-------------hhhHhhccccCCEEE-EEeeCCChhHHHHHHHH
Q psy8700          53 ------------------NICTLQITDTTGSHQF-------------PAMQRLSISKGHAFI-LVYSCTSRQSLEELRPI  100 (200)
Q Consensus        53 ------------------~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~~~  100 (200)
                                        ....+.++|+||....             ..+...|+...+.++ +|.+............+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                              0114789999994321             244566777776554 56666554443333333


Q ss_pred             HHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccc
Q psy8700         101 WEVIRETKGGANELASIPIMLVGNKCDETENRE  133 (200)
Q Consensus       101 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  133 (200)
                      ..   ...     ....++++|+||+|.....+
T Consensus       185 ~~---~~~-----~~~~r~i~Vltk~D~~~~~~  209 (299)
T d2akab1         185 AK---EVD-----PQGQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             HH---HHC-----TTCSSEEEEEECGGGSCTTC
T ss_pred             HH---HhC-----cCCCceeeEEeccccccchh
Confidence            22   222     34468999999999876543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.08  E-value=6.9e-10  Score=81.32  Aligned_cols=86  Identities=16%  Similarity=0.147  Sum_probs=57.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCC--CCCcCCCcccceeEEEEeCCc---------------EEEEEEEeCCCCC-
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCNKN---------------ICTLQITDTTGSH-   66 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~-   66 (200)
                      ++.+||+++|.|+||||||+|++++...  ..+|.-++-+.....+.+.+.               ...+++.|+||.. 
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            5678999999999999999999997543  233433332222233333321               2478999999832 


Q ss_pred             ---CC---hhhHhhccccCCEEEEEeeCCC
Q psy8700          67 ---QF---PAMQRLSISKGHAFILVYSCTS   90 (200)
Q Consensus        67 ---~~---~~~~~~~~~~~~~~i~v~d~~~   90 (200)
                         +-   .......++.+|++++|+++.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence               21   2344556678999999998854

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.02  E-value=8e-10  Score=81.35  Aligned_cols=26  Identities=35%  Similarity=0.451  Sum_probs=23.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKGTF   32 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~~~   32 (200)
                      ..+|+|+|..++|||||+|+|++..+
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            35899999999999999999998664

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.99  E-value=5.4e-10  Score=82.75  Aligned_cols=82  Identities=20%  Similarity=0.188  Sum_probs=43.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCcCC-Cc-----cccee-EE----------------EEeCCcEEEEEEEeCCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIP-TI-----EDTYR-QV----------------ISCNKNICTLQITDTTG   64 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~-~~-----~~~~~-~~----------------~~~~~~~~~~~~~D~~G   64 (200)
                      .||+++|.|+||||||+|+|++........| ++     +.... ..                .........++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            3799999999999999999998654322222 11     11100 00                00011236799999999


Q ss_pred             CCC----ChhhHhh---ccccCCEEEEEeeCC
Q psy8700          65 SHQ----FPAMQRL---SISKGHAFILVYSCT   89 (200)
Q Consensus        65 ~~~----~~~~~~~---~~~~~~~~i~v~d~~   89 (200)
                      .-.    -..+...   .++++|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            532    1223333   445789999999986

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.76  E-value=6e-09  Score=75.33  Aligned_cols=59  Identities=24%  Similarity=0.330  Sum_probs=37.3

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCCcCCCcccceeE--EEEeCCcEEEEEEEeCCCCCC
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      ....++|+++|.||||||||+|+|.+...  ......++.++.  .+..+.   .+.++||||...
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~--~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi~~  169 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNI--AKTGDRPGITTSQQWVKVGK---ELELLDTPGILW  169 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCC--C------------CCEEETT---TEEEEECCCCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccce--EEECCcccccccceEEECCC---CeEEecCCCccc
Confidence            45679999999999999999999998654  222333333332  222222   489999999543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.73  E-value=1.4e-08  Score=70.63  Aligned_cols=87  Identities=20%  Similarity=0.161  Sum_probs=61.5

Q ss_pred             hccccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEE
Q psy8700          74 LSISKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFME  152 (200)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (200)
                      ....+.|.+++|+++.+|+ +...+..++.......        .|.+||+||+||.+..+.............+++++.
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~--------i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~   77 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNE--------LETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVK   77 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTT--------CEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEE
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcC--------CCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEE
Confidence            4567899999999998865 4566666665555433        899999999999775432222111112233468999


Q ss_pred             ecccCCCcHHHHHHHH
Q psy8700         153 TSAKTNHNVKELFAEL  168 (200)
Q Consensus       153 vSa~~~~~i~~~~~~i  168 (200)
                      +|++++.|++++.+.+
T Consensus        78 vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          78 TSAKTGMGIEELKEYL   93 (225)
T ss_dssp             CCTTTCTTHHHHHHHH
T ss_pred             eccccchhHhhHHHHh
Confidence            9999999999988765

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=5.3e-07  Score=62.84  Aligned_cols=85  Identities=8%  Similarity=-0.063  Sum_probs=46.3

Q ss_pred             EEEEEeCCCCCCChhhHhhcc--------ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCC
Q psy8700          56 TLQITDTTGSHQFPAMQRLSI--------SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCD  127 (200)
Q Consensus        56 ~~~~~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  127 (200)
                      ...++++.|......+...+.        ...++++.++|.............+....+..          =+|++||+|
T Consensus        91 d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~A----------D~ivlNK~D  160 (222)
T d1nija1          91 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA----------DRILLTKTD  160 (222)
T ss_dssp             SEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTC----------SEEEEECTT
T ss_pred             ceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhC----------Ccccccccc
Confidence            346778878665444433221        13578899999887653322222221111222          289999999


Q ss_pred             CCcccccCHHHHHHHHHHh--CCcEEEec
Q psy8700         128 ETENREVSAAEGEAEAKMW--GCHFMETS  154 (200)
Q Consensus       128 l~~~~~~~~~~~~~~~~~~--~~~~~~vS  154 (200)
                      +.+..+    ......+..  ..++++++
T Consensus       161 l~~~~~----~~~~~l~~lNP~a~Ii~~~  185 (222)
T d1nija1         161 VAGEAE----KLHERLARINARAPVYTVT  185 (222)
T ss_dssp             TCSCTH----HHHHHHHHHCSSSCEEECC
T ss_pred             cccHHH----HHHHHHHHHhCCCeEEEee
Confidence            976322    223333444  45787665

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.42  E-value=1.9e-07  Score=64.45  Aligned_cols=91  Identities=18%  Similarity=0.052  Sum_probs=52.0

Q ss_pred             EEEEEEeCCCCCCChhhHhhcc-------c-----cCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEE
Q psy8700          55 CTLQITDTTGSHQFPAMQRLSI-------S-----KGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLV  122 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~~~-------~-----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  122 (200)
                      +.+.++||+|...+.......+       .     ..+-.++|++.+...  ..+......... .        .+-=++
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~-~--------~~~~lI  162 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEA-V--------NVTGII  162 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHH-S--------CCCEEE
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhccc-c--------CCceEE
Confidence            4689999999665543222111       1     136788999987542  222222222222 1        244789


Q ss_pred             eeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700         123 GNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus       123 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      +||.|...  ..-  .........+.|+..++  .|++++
T Consensus       163 ~TKlDe~~--~~G--~~l~~~~~~~~Pi~~i~--~Gq~v~  196 (213)
T d1vmaa2         163 LTKLDGTA--KGG--ITLAIARELGIPIKFIG--VGEKAE  196 (213)
T ss_dssp             EECGGGCS--CTT--HHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             EecccCCC--ccc--HHHHHHHHHCCCEEEEe--CCCCcc
Confidence            99999532  222  23445667788888887  465553

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.41  E-value=1.4e-07  Score=65.52  Aligned_cols=57  Identities=26%  Similarity=0.218  Sum_probs=33.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC-CCcCCC-----cc-cceeEEEEeCCcEEEEEEEeCCCCCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPT-----IE-DTYRQVISCNKNICTLQITDTTGSHQ   67 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~D~~G~~~   67 (200)
                      -..+++|.+|||||||+|+|.+.... ....+.     .. .+.+..+.+++.   ..++||||...
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~  159 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFAN  159 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTT
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccc
Confidence            35789999999999999999875321 111111     11 111223344433   57899999654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.40  E-value=5e-08  Score=67.97  Aligned_cols=88  Identities=17%  Similarity=0.236  Sum_probs=62.4

Q ss_pred             hhccccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHH--HHHHHHHHhCCc
Q psy8700          73 RLSISKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAA--EGEAEAKMWGCH  149 (200)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~  149 (200)
                      +....+.|.+++|+++.+|+ +...+..++.....        ...+.+||+||+||.+..+....  .........|++
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~--------~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~   76 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--------NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD   76 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--------TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH--------cCCCEEEEEecccccccHHHHHHHHHHHHHHhhcccc
Confidence            34567899999999988765 56666666655443        34789999999999765432211  122334556899


Q ss_pred             EEEecccCCCcHHHHHHHH
Q psy8700         150 FMETSAKTNHNVKELFAEL  168 (200)
Q Consensus       150 ~~~vSa~~~~~i~~~~~~i  168 (200)
                      ++.+|+.++.|++++.+.+
T Consensus        77 v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          77 VYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             EEECCHHHHTTCTTTGGGG
T ss_pred             ceeeecCChhHHHHHHHhh
Confidence            9999999999988876644

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.35  E-value=2.3e-07  Score=63.91  Aligned_cols=92  Identities=16%  Similarity=0.143  Sum_probs=51.6

Q ss_pred             EEEEEEeCCCCCCChh--h----Hhhcc--ccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCC
Q psy8700          55 CTLQITDTTGSHQFPA--M----QRLSI--SKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKC  126 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~--~----~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  126 (200)
                      ..+.++||+|...+..  .    ...+.  ...+-+++|++++....  .+..... .....        .+--+++||.
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~-~~~~~--------~~~~lI~TKl  163 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASK-FNQAS--------KIGTIIITKM  163 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHH-HHHHC--------TTEEEEEECT
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhh-hhccc--------CcceEEEecc
Confidence            4799999999654321  1    11111  13567888998876532  2222222 22222        2335779999


Q ss_pred             CCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHHH
Q psy8700         127 DETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVKE  163 (200)
Q Consensus       127 Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~~  163 (200)
                      |....    .=.........+.|+..++  .|+++++
T Consensus       164 Det~~----~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         164 DGTAK----GGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             TSCSC----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             cCCCc----ccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence            96332    1223445567788888887  5666643

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.33  E-value=6.6e-07  Score=61.44  Aligned_cols=142  Identities=14%  Similarity=0.088  Sum_probs=75.7

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCC----------CCCcCCCcccce-------eEEEE-eC------------
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTF----------RESYIPTIEDTY-------RQVIS-CN------------   51 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~----------~~~~~~~~~~~~-------~~~~~-~~------------   51 (200)
                      |-++...-|+++|++||||||.+-+|...-.          ...|.....+..       ...+. ..            
T Consensus         1 P~~~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~   80 (207)
T d1okkd2           1 PVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDA   80 (207)
T ss_dssp             CCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHH
Confidence            3455667789999999999999888743110          011111110000       00000 00            


Q ss_pred             -----CcEEEEEEEeCCCCCCChhhHhh----cc--------ccCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCC
Q psy8700          52 -----KNICTLQITDTTGSHQFPAMQRL----SI--------SKGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANE  113 (200)
Q Consensus        52 -----~~~~~~~~~D~~G~~~~~~~~~~----~~--------~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~  113 (200)
                           .....+.++||+|...+......    +.        ...+-.++|+|.+... ........   .....     
T Consensus        81 ~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~---~~~~~-----  152 (207)
T d1okkd2          81 VQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKF---HEAVG-----  152 (207)
T ss_dssp             HHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHH---HHHHC-----
T ss_pred             HHHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHh---hhccC-----
Confidence                 01247899999996654322111    11        1346788999987543 33332222   22222     


Q ss_pred             CCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcH
Q psy8700         114 LASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNV  161 (200)
Q Consensus       114 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i  161 (200)
                          +--+++||.|....  .-  .........+.|+..++  .|+++
T Consensus       153 ----~~~lI~TKlDet~~--~G--~~l~~~~~~~~Pi~~i~--~Gq~p  190 (207)
T d1okkd2         153 ----LTGVIVTKLDGTAK--GG--VLIPIVRTLKVPIKFVG--VGEGP  190 (207)
T ss_dssp             ----CSEEEEECTTSSCC--CT--THHHHHHHHCCCEEEEE--CSSST
T ss_pred             ----CceEEEeccCCCCC--cc--HHHHHHHHHCCCEEEEe--CCCCh
Confidence                33689999995332  11  13444667888887777  34443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.31  E-value=4.4e-07  Score=62.37  Aligned_cols=85  Identities=19%  Similarity=0.129  Sum_probs=48.6

Q ss_pred             EEEEEEeCCCCCCChhhHhhc------cccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCC
Q psy8700          55 CTLQITDTTGSHQFPAMQRLS------ISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDE  128 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~~------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  128 (200)
                      ..+.++||+|...+.......      ..+.+-+++|.+...+..  .+. ......+..+        +-=+++||.|.
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~--~~~-~~~~f~~~~~--------~~~~I~TKlDe  161 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE--ALS-VARAFDEKVG--------VTGLVLTKLDG  161 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH--HHH-HHHHHHHHTC--------CCEEEEECGGG
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchh--HHH-HHHHHHhhCC--------CCeeEEeecCc
Confidence            478999999966543322221      224578899999876542  221 2222222221        33588999995


Q ss_pred             CcccccCHHHHHHHHHHhCCcEEEec
Q psy8700         129 TENREVSAAEGEAEAKMWGCHFMETS  154 (200)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~vS  154 (200)
                      ..  ..  =.........+.|+..++
T Consensus       162 ~~--~~--G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         162 DA--RG--GAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             CS--SC--HHHHHHHHHHCCCEEEEC
T ss_pred             cc--cc--hHHHHHHHHHCCCEEEEe
Confidence            32  11  223445567788887776

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.28  E-value=1.1e-06  Score=63.05  Aligned_cols=93  Identities=8%  Similarity=0.078  Sum_probs=66.1

Q ss_pred             hhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCcccccCHHHHHHHHHHhCCc
Q psy8700          70 AMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREVSAAEGEAEAKMWGCH  149 (200)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  149 (200)
                      ......+..+|++++|+|+.+|.+..+-  .   +.+..      ...|.++|+||+|+.+...  ......+....+..
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~~--~---l~~~~------~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~   73 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRNP--M---IEDIL------KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIR   73 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSCH--H---HHHHC------SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCC
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCCH--H---HHHHH------cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCc
Confidence            3455678899999999999988765541  1   22222      3479999999999976542  12223333445678


Q ss_pred             EEEecccCCCcHHHHHHHHHHHHhcc
Q psy8700         150 FMETSAKTNHNVKELFAELLNLEKNR  175 (200)
Q Consensus       150 ~~~vSa~~~~~i~~~~~~i~~~~~~~  175 (200)
                      ++.+|+.++.++.++.+.+.+.+.+.
T Consensus        74 ~i~isa~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          74 SLSINSVNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             cceeecccCCCccccchhhhhhhhhh
Confidence            99999999999998888888776543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=3e-07  Score=63.28  Aligned_cols=90  Identities=14%  Similarity=0.086  Sum_probs=50.9

Q ss_pred             EEEEEEeCCCCCCChhhHh-------hccc-----cCCEEEEEeeCCChh-HHHHHHHHHHHHHHHhCCCCCCCCCcEEE
Q psy8700          55 CTLQITDTTGSHQFPAMQR-------LSIS-----KGHAFILVYSCTSRQ-SLEELRPIWEVIRETKGGANELASIPIML  121 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~-------~~~~-----~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  121 (200)
                      +.+.++||+|.........       ...+     ..+-.++|+|..... .......   ... ..        .+--+
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~---~~~-~~--------~~~~l  159 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL---FHE-AV--------GLTGI  159 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHH---HHH-HS--------CCCEE
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhh---hhh-cc--------CCceE
Confidence            4689999999654332111       1121     246788899887543 2222222   122 12        24478


Q ss_pred             EeeCCCCCcccccCHHHHHHHHHHhCCcEEEecccCCCcHH
Q psy8700         122 VGNKCDETENREVSAAEGEAEAKMWGCHFMETSAKTNHNVK  162 (200)
Q Consensus       122 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~~i~  162 (200)
                      ++||.|...  ..-  .........+.|+..++  .|++++
T Consensus       160 IlTKlDe~~--~~G--~~l~~~~~~~~Pi~~i~--~Gq~v~  194 (211)
T d2qy9a2         160 TLTKLDGTA--KGG--VIFSVADQFGIPIRYIG--VGERIE  194 (211)
T ss_dssp             EEECCTTCT--TTT--HHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             EEeecCCCC--Ccc--HHHHHHHHHCCCEEEEe--CCCCcc
Confidence            999999532  222  23444667888888887  566553

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=1.9e-07  Score=65.06  Aligned_cols=23  Identities=39%  Similarity=0.446  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -..+++|++|||||||+|+|.+.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            35689999999999999999875

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.04  E-value=1.8e-06  Score=57.27  Aligned_cols=26  Identities=23%  Similarity=0.440  Sum_probs=23.8

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +++..+|+++|+|||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            67889999999999999999999865

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.02  E-value=1.5e-06  Score=58.03  Aligned_cols=22  Identities=36%  Similarity=0.773  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .||+++|++|+|||||++.+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            3899999999999999999976

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.95  E-value=2e-06  Score=57.62  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -+|+|+|++|||||||+++|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.87  E-value=4.9e-06  Score=56.23  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=22.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ++.++|+++|+|||||||....|..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999998864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=4.2e-06  Score=55.22  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -|+|+|++|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999975

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.82  E-value=4.4e-06  Score=55.22  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+|+++|+|||||||+.++|..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.82  E-value=6.4e-06  Score=55.79  Aligned_cols=26  Identities=31%  Similarity=0.472  Sum_probs=22.5

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ++.+..|+++|+|||||||+.++|..
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45667889999999999999999865

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.80  E-value=5.1e-06  Score=56.12  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=21.3

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ++.+|+|+|+|||||||+.+.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999988854

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=2.2e-05  Score=56.20  Aligned_cols=101  Identities=15%  Similarity=0.145  Sum_probs=57.3

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC----CCcCCCcccceeEEEEe-CCcEEEEEEEeCCCCCCChh------hHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTFR----ESYIPTIEDTYRQVISC-NKNICTLQITDTTGSHQFPA------MQRL   74 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~------~~~~   74 (200)
                      +-.=|+++|+.++|||+|+|.|.+....    ....+.+.+.+...... ++....+.++||.|......      ....
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~~~~~~~~~i~  110 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIF  110 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHH
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccccccchhHHHHH
Confidence            3456899999999999999999986532    22233344444333333 44556899999999543211      1111


Q ss_pred             ccc--cCCEEEEEee-CCChhHHHHHHHHHHHHHH
Q psy8700          75 SIS--KGHAFILVYS-CTSRQSLEELRPIWEVIRE  106 (200)
Q Consensus        75 ~~~--~~~~~i~v~d-~~~~~~~~~~~~~~~~~~~  106 (200)
                      .+.  =++.+|+=.. ..+...++.+.........
T Consensus       111 ~l~~llSs~~i~N~~~~~~~~~l~~L~~~~~~~~~  145 (277)
T d1f5na2         111 ALAVLLSSTFVYNSIGTINQQAMDQLYYVTELTHR  145 (277)
T ss_dssp             HHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHHHH
T ss_pred             HHHHHHhCEEEEeccccCcHHHHHHHHHHHHHHHH
Confidence            111  2465555433 3345555555554444433

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.76  E-value=9.8e-06  Score=54.78  Aligned_cols=26  Identities=31%  Similarity=0.507  Sum_probs=23.0

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +....+|+++|+|||||||+...|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999999876

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.75  E-value=8.1e-06  Score=52.85  Aligned_cols=20  Identities=30%  Similarity=0.630  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      |++.|+|||||||++++|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999865

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.67  E-value=1.3e-05  Score=53.59  Aligned_cols=21  Identities=29%  Similarity=0.533  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +|+++|+|||||||+.+.|..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988854

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.65  E-value=1.3e-05  Score=52.87  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -|++.|+|||||||++++|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999975

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.65  E-value=1.4e-05  Score=52.68  Aligned_cols=20  Identities=30%  Similarity=0.421  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      |.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            47999999999999999864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.64  E-value=1.5e-05  Score=53.38  Aligned_cols=21  Identities=33%  Similarity=0.591  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +|+++|+|||||||+.+.|..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988875

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.63  E-value=2.3e-05  Score=51.89  Aligned_cols=28  Identities=14%  Similarity=0.339  Sum_probs=22.6

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      |.....+-|.++|.|||||||+.+.|..
T Consensus         1 ~~~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           1 PRATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CTTTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3445567889999999999999888764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=1.9e-05  Score=52.81  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=20.8

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..+|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999998865

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.60  E-value=1.9e-05  Score=52.71  Aligned_cols=22  Identities=27%  Similarity=0.659  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+|+++|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999865

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.58  E-value=6.2e-05  Score=48.91  Aligned_cols=24  Identities=29%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      ..-|++-|+-|||||||++.++..
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEecCCCccHHHHHHHHHhh
Confidence            445889999999999999998753

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2.3e-05  Score=52.92  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +..|+++|+|||||||...+|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=2e-05  Score=52.59  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+|+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988854

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=3.8e-05  Score=50.98  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=21.5

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +.+.=|+++|.|||||||+++++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4566789999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.8e-05  Score=50.61  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.50  E-value=2.7e-05  Score=53.06  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999874

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=5.2e-05  Score=51.23  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=21.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ++.--|+++|+|||||||+...|..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4455689999999999999999865

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=5e-05  Score=53.11  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      =+++++|+.|||||||++.+.+
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999887

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.44  E-value=3.2e-05  Score=50.88  Aligned_cols=22  Identities=36%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+|+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999888753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.44  E-value=3.7e-05  Score=51.13  Aligned_cols=20  Identities=35%  Similarity=0.429  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999998853

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=3.9e-05  Score=50.90  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|.+.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.42  E-value=6.5e-05  Score=52.59  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      =.++++|+.|||||||++.+.+
T Consensus        29 e~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999876

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=4.4e-05  Score=50.14  Aligned_cols=20  Identities=30%  Similarity=0.542  Sum_probs=17.6

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      ++++|++||||||+.+.|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56699999999999999865

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.39  E-value=0.0001  Score=53.84  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      ..|++.|++|||||||+++|+..-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            358999999999999999998733

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=4.7e-05  Score=51.14  Aligned_cols=21  Identities=33%  Similarity=0.659  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~   30 (200)
                      |+|+||+|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.38  E-value=6e-05  Score=50.63  Aligned_cols=25  Identities=16%  Similarity=0.242  Sum_probs=21.5

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+.+=|+|.|++|||||||.++|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567799999999999999999864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.37  E-value=6.8e-05  Score=50.94  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        29 i~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            468999999999999999987

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.36  E-value=5e-05  Score=49.74  Aligned_cols=21  Identities=38%  Similarity=0.547  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888854

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.36  E-value=6.3e-05  Score=53.00  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +++++|+.|||||||++.+.+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            689999999999999998876

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.35  E-value=5.4e-05  Score=50.56  Aligned_cols=21  Identities=38%  Similarity=0.501  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~   30 (200)
                      |+++||+||||||+++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999999753

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.34  E-value=5.3e-05  Score=49.94  Aligned_cols=20  Identities=25%  Similarity=0.473  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      |++.|++||||||+.+.|..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999988865

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=8.2e-05  Score=52.34  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            689999999999999999877

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.33  E-value=6.1e-05  Score=49.58  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      |++.|++||||||+.+.|..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            55669999999999999876

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.31  E-value=5.6e-05  Score=50.99  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -|+++|+|||||||+..+|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999865

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.31  E-value=8.6e-05  Score=51.43  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCcchhhHhccC
Confidence            478999999999999998776

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.28  E-value=0.00011  Score=51.93  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +--|++.||||+|||||+.++..
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34489999999999999999876

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=5.9e-05  Score=51.49  Aligned_cols=21  Identities=38%  Similarity=0.564  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~   30 (200)
                      |+++||+|||||||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            688999999999999999764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=7.9e-05  Score=50.17  Aligned_cols=20  Identities=40%  Similarity=0.722  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      |+|+||+|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.26  E-value=0.00011  Score=51.09  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        34 ~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            479999999999999999887

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=8.1e-05  Score=51.61  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        28 i~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            478999999999999998876

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.25  E-value=0.00012  Score=50.95  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        26 ~~~liGpnGaGKSTll~~i~G   46 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            467999999999999999987

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.25  E-value=8.8e-05  Score=48.91  Aligned_cols=21  Identities=19%  Similarity=0.450  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999888853

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=8.7e-05  Score=49.44  Aligned_cols=20  Identities=30%  Similarity=0.644  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      |+++||+||||+||+++|..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999985

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.23  E-value=0.00013  Score=51.22  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=22.1

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..+.-.|++.||||+|||++++.+..
T Consensus        37 ~~p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          37 RTPLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHhh
Confidence            34456799999999999999999975

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00011  Score=50.25  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ++-|++.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999998854

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.20  E-value=0.00014  Score=50.68  Aligned_cols=21  Identities=19%  Similarity=0.455  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        31 ~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            479999999999999999887

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=9.3e-05  Score=52.93  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        64 ~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            589999999999999999987

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.19  E-value=0.00013  Score=50.16  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+.|++-|||||||||....|..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57889999999999999998864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.0013  Score=45.66  Aligned_cols=22  Identities=18%  Similarity=0.581  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..+++.||+|+||||++..+..
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998875

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=6e-05  Score=50.57  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=19.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-|.++|.|||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999998854

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00013  Score=50.73  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..+++.||||+||||+++.+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            3589999999999999998875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.12  E-value=8.5e-05  Score=51.38  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        28 ~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            378999999999999999988

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.11  E-value=0.00011  Score=51.79  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +++++|+.|||||||++-+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            789999999999999997766

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.00019  Score=50.05  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -++++|+.|||||||++.+.+-
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999999873

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.10  E-value=0.00016  Score=50.34  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-.+++.||||+||||+++.+..
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.10  E-value=0.00013  Score=50.86  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        34 i~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            368999999999999999987

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.09  E-value=0.00013  Score=48.64  Aligned_cols=19  Identities=37%  Similarity=0.566  Sum_probs=16.4

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy8700          10 VVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~   28 (200)
                      |+|.|.+||||||+++.|.
T Consensus         4 ivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3567999999999999885

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.0001  Score=51.16  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            378999999999999999987

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00012  Score=50.95  Aligned_cols=21  Identities=38%  Similarity=0.409  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++|+.|||||||++.+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            468999999999999999977

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.07  E-value=0.00018  Score=48.44  Aligned_cols=27  Identities=30%  Similarity=0.511  Sum_probs=23.5

Q ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           3 EQSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         3 ~~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +...++-|+|-|..||||||+++.|..
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            455677899999999999999999875

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.04  E-value=0.00023  Score=50.13  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~   30 (200)
                      ++++|+.|||||||++.+.+-
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHHCC
Confidence            689999999999999999883

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.03  E-value=0.00012  Score=51.04  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        33 ~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            579999999999999999988

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.00025  Score=47.44  Aligned_cols=26  Identities=19%  Similarity=0.162  Sum_probs=22.0

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      .++-|++.|.+||||||+.+.|....
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            46789999999999999999886543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.97  E-value=0.00021  Score=50.39  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++++|+.|||||||++.+.+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            479999999999999999977

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.90  E-value=0.00027  Score=51.27  Aligned_cols=23  Identities=30%  Similarity=0.624  Sum_probs=20.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .--++++||||+|||.|++++..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhh
Confidence            35689999999999999999875

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00031  Score=47.94  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      =|++.|||||||||....|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            577889999999999888864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.85  E-value=0.00032  Score=48.39  Aligned_cols=21  Identities=29%  Similarity=0.591  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+++.||+|+||||+++.+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998875

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00052  Score=46.65  Aligned_cols=27  Identities=30%  Similarity=0.351  Sum_probs=22.4

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKGTF   32 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~~~   32 (200)
                      ..+-|+++|.+||||||+.+.|....+
T Consensus         2 mk~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHCCC
Confidence            456799999999999999998865443

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00032  Score=49.02  Aligned_cols=22  Identities=18%  Similarity=0.463  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.+++.||||+||||+++.+..
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.76  E-value=0.00041  Score=48.58  Aligned_cols=21  Identities=33%  Similarity=0.523  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|++.||||+|||++++++..
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            589999999999999999986

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.75  E-value=0.0015  Score=46.02  Aligned_cols=89  Identities=15%  Similarity=0.060  Sum_probs=53.1

Q ss_pred             EEEEEEeCCCCCCChh-hHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCc-EEEEeeCCCCCccc
Q psy8700          55 CTLQITDTTGSHQFPA-MQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIP-IMLVGNKCDETENR  132 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~  132 (200)
                      +.+.++|+|+.-.... ........+|.++++.+. +..++.........+.....    ....+ .-++.|+.+.... 
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~----~~~~~~~~vv~N~~~~~~~-  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAK----SGGVRLGGIICNSRKVANE-  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBT----TBBCEEEEEEEECCSSSCC-
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhcc----ccceeccceEEeeecCCCc-
Confidence            5788999987443322 222333457877777655 56677776676666666542    22222 3478899886442 


Q ss_pred             ccCHHHHHHHHHHhCCcEEE
Q psy8700         133 EVSAAEGEAEAKMWGCHFME  152 (200)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~  152 (200)
                         ......+.+..+.+++.
T Consensus       190 ---~~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         190 ---YELLDAFAKELGSQLIH  206 (269)
T ss_dssp             ---HHHHHHHHHHHTCCEEE
T ss_pred             ---cchhhhhHhhcCCeEEE
Confidence               23345566677776654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.75  E-value=0.016  Score=39.31  Aligned_cols=66  Identities=15%  Similarity=0.203  Sum_probs=44.9

Q ss_pred             EEEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEE-EEeeCCCCCc
Q psy8700          54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIM-LVGNKCDETE  130 (200)
Q Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~  130 (200)
                      .+.+.++|+++...  ......+..+|.++++... +..++.........+.+.        +.|++ +|+|+.+..+
T Consensus       111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~--------~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKA--------GLAILGFVLNRYGRSD  177 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHT--------TCEEEEEEEEEETSCT
T ss_pred             cCCEEEEccccccc--ccchhhhhhhhcccccccc-cceecchhhHHHHHHhhh--------hhhhhhhhhccccccc
Confidence            35789999998653  3444456679999998875 455666666666555542        25665 8999998643

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00064  Score=45.60  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=21.0

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      ..-.++++|+||+|||+++..|...
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHH
Confidence            3457899999999999999888753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.72  E-value=0.00065  Score=47.63  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=20.9

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-.+++.|+||+|||++++.+..
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998875

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00052  Score=48.27  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.+++.||||+|||++++.+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            3589999999999999999975

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.66  E-value=0.00077  Score=45.85  Aligned_cols=25  Identities=20%  Similarity=0.352  Sum_probs=21.2

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ....-|.|.|.|||||||+.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.65  E-value=0.00086  Score=45.41  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .+-|+++|..||||||+.+.|...
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHC
Confidence            467999999999999999988643

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00056  Score=46.92  Aligned_cols=21  Identities=24%  Similarity=0.513  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+++.||+|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            589999999999999988764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00077  Score=47.63  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=20.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      .-.++++|+||+|||+++..|...
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHH
Confidence            457899999999999999988753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.62  E-value=0.00048  Score=48.40  Aligned_cols=21  Identities=29%  Similarity=0.358  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478999999999999999864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.0006  Score=47.03  Aligned_cols=21  Identities=33%  Similarity=0.714  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+++.||+|+||||+++.+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            489999999999999998875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.59  E-value=0.00063  Score=45.95  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.00078  Score=48.60  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=22.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ...++=|+|.|++|||||||.+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            45678999999999999999888753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.54  E-value=0.00093  Score=47.00  Aligned_cols=22  Identities=18%  Similarity=0.474  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.|++.||||+|||++++++..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            4599999999999999999987

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.52  E-value=0.00049  Score=48.57  Aligned_cols=20  Identities=35%  Similarity=0.401  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      +.+.|+||+|||++++.+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            34569999999999999875

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.00076  Score=46.28  Aligned_cols=21  Identities=24%  Similarity=0.676  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+++.||+|+||||++..+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            489999999999999999876

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.50  E-value=0.0024  Score=45.39  Aligned_cols=89  Identities=13%  Similarity=0.076  Sum_probs=49.5

Q ss_pred             EEEEEEeCCCCCCChhhHhh-ccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcE-EEEeeCCCCCccc
Q psy8700          55 CTLQITDTTGSHQFPAMQRL-SISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI-MLVGNKCDETENR  132 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~-~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~  132 (200)
                      +.+.++|+|+.......... ....++.++++. ..+..++..+......+.....    ....++ .+|.|+.+.... 
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~-~~~~~s~~~~~~~~~~i~~~~~----~~~~~~~gvv~n~~~~~~~-  192 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVC-SGEMMAMYAANNISKGIVKYAN----SGSVRLGGLICNSRNTDRE-  192 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEE-CSSHHHHHHHHHHHHHHHHHHT----TSCCEEEEEEEECCCCTTH-
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeeccc-chhHHHHHHHHHHHHHHHhhhh----cccccccceeehhhcchhh-
Confidence            57789999875433222222 223456665554 4456666666666666665542    233444 378898874322 


Q ss_pred             ccCHHHHHHHHHHhCCcEEE
Q psy8700         133 EVSAAEGEAEAKMWGCHFME  152 (200)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~  152 (200)
                         ......+....+.+++.
T Consensus       193 ---~~~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         193 ---DELIIALANKLGTQMIH  209 (289)
T ss_dssp             ---HHHHHHHHHHHTSCEEE
T ss_pred             ---HHHHHHHHHHcCCeEEE
Confidence               22344556667776654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.00085  Score=47.39  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -.|++.|++|+|||+|++++..
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHH
Confidence            4599999999999999999976

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.00086  Score=45.49  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=17.8

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998764

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.30  E-value=0.059  Score=36.31  Aligned_cols=84  Identities=10%  Similarity=0.052  Sum_probs=50.1

Q ss_pred             EEEEEEeCCCCCCChhhHhhccccCCEEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcEEEEeeCCCCCccccc
Q psy8700          55 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPIMLVGNKCDETENREV  134 (200)
Q Consensus        55 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  134 (200)
                      +.+.++|+|+...  ......+..+|.+++|... +..+................       .++-+|+|+.+....   
T Consensus       110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~iv~N~~~~~~~---  176 (232)
T d1hyqa_         110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNP-EISSITDGLKTKIVAERLGT-------KVLGVVVNRITTLGI---  176 (232)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECS-SHHHHHHHHHHHHHHHHHTC-------EEEEEEEEEECTTTH---
T ss_pred             cceeeeccccccc--chhHHHhhhhheeeeeccc-cccchhhhhhhhhhhhhccc-------ccccccccccccccc---
Confidence            4678999988653  3444556679999888875 44555555555544444331       234578999864221   


Q ss_pred             CHHHHHHHHHHhCCcEEE
Q psy8700         135 SAAEGEAEAKMWGCHFME  152 (200)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~  152 (200)
                       ........+..+.+++.
T Consensus       177 -~~~~~~i~~~~~~~~~~  193 (232)
T d1hyqa_         177 -EMAKNEIEAILEAKVIG  193 (232)
T ss_dssp             -HHHHHHHHHHTTSCEEE
T ss_pred             -cchhhhHHhhcCCeEEE
Confidence             22234455666776553

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0019  Score=45.92  Aligned_cols=24  Identities=21%  Similarity=0.245  Sum_probs=20.1

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~   28 (200)
                      ..++=|+|-|++|||||||...+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHH
Confidence            346889999999999999987663

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.27  E-value=0.0017  Score=42.80  Aligned_cols=25  Identities=36%  Similarity=0.559  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTF   32 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~   32 (200)
                      .-|++.|++|+||||++-.|.....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999999987553

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0014  Score=44.59  Aligned_cols=20  Identities=30%  Similarity=0.473  Sum_probs=16.8

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      |+|-|+.||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77779999999998887644

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.16  E-value=0.0019  Score=48.92  Aligned_cols=22  Identities=32%  Similarity=0.662  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      =+|+++||+|||||-|+++|..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999854

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.06  E-value=0.002  Score=42.42  Aligned_cols=25  Identities=28%  Similarity=0.514  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTF   32 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~   32 (200)
                      .-|++.|++|+||||+.-.|.....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            3489999999999999999987553

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0012  Score=45.50  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0022  Score=43.22  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhhCC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~~   31 (200)
                      +.+.|+||+|||+|...+....
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6899999999999999887644

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.97  E-value=0.0011  Score=47.26  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=15.1

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~   28 (200)
                      =|+|.|++||||||+.++|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            49999999999999998874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.96  E-value=0.0021  Score=47.44  Aligned_cols=23  Identities=17%  Similarity=0.212  Sum_probs=20.0

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .--+++.||||+|||+|...+..
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999865

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.91  E-value=0.0014  Score=47.83  Aligned_cols=21  Identities=43%  Similarity=0.653  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .+++.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999853

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.004  Score=45.01  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=19.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-.++++||+|+|||.|++.|..
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHh
Confidence            33689999999999999999864

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.78  E-value=0.0032  Score=41.13  Aligned_cols=25  Identities=32%  Similarity=0.559  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKGTF   32 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~~~   32 (200)
                      .-|++.|++|+||||+.-.|.....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999887654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.71  E-value=0.0027  Score=46.05  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.4

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..++|.|=|+-||||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            367899999999999999999864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.69  E-value=0.0036  Score=46.16  Aligned_cols=25  Identities=20%  Similarity=0.433  Sum_probs=21.3

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -+.-.++++||+|||||-+.++|..
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHh
Confidence            3456799999999999999999854

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.61  E-value=0.0027  Score=47.27  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=18.7

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .=.++++|+||+|||+++..|..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            34569999999999999876654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.59  E-value=0.0029  Score=45.98  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=21.2

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .++|+|=|..||||||+++.|..
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999976

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0044  Score=42.63  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=20.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +--|+|-|..||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34689999999999999999875

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.55  E-value=0.0038  Score=43.01  Aligned_cols=21  Identities=14%  Similarity=0.156  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -|++.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.54  E-value=0.0045  Score=45.02  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=21.9

Q ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Q psy8700           6 NDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         6 ~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..++|.|=|..|+||||+++.|..
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             ceEEEEEECCccCCHHHHHHHHHH
Confidence            468999999999999999999876

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.53  E-value=0.0038  Score=46.70  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -=|+|.|+.||||||.+..++..
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHhhh
Confidence            45899999999999999999873

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.53  E-value=0.0032  Score=43.21  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      -+.|.|+||+|||+|...+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            36899999999999999887644

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.53  E-value=0.0061  Score=43.11  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=19.9

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ..-|++.|.+|+|||||+..+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999999875

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.51  E-value=0.0035  Score=43.28  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      -++|.|+||+|||+|.-.++...
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            36899999999999998887644

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.44  E-value=0.0037  Score=42.47  Aligned_cols=20  Identities=20%  Similarity=0.310  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      |++-|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            88999999999999988864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.43  E-value=0.0044  Score=44.75  Aligned_cols=20  Identities=40%  Similarity=0.607  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      +++.|+||+|||.+++.+..
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            45679999999999999876

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.33  E-value=0.0045  Score=42.54  Aligned_cols=22  Identities=45%  Similarity=0.699  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      -+++.|+||+|||+|...+...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999888654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.00091  Score=44.67  Aligned_cols=18  Identities=39%  Similarity=0.660  Sum_probs=16.1

Q ss_pred             EEECCCCCCHHHHHHHHh
Q psy8700          11 VVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus        11 ~~~G~~~~GKSsli~~l~   28 (200)
                      +|+|+.||||||++.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            568999999999999984

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.25  E-value=0.0058  Score=41.46  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~   30 (200)
                      +.+.|++|+|||.|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998763

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.0066  Score=40.96  Aligned_cols=20  Identities=15%  Similarity=0.483  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      +++.|++|+||||++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999997764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.0067  Score=41.80  Aligned_cols=20  Identities=35%  Similarity=0.526  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      +++.|++|+||||+++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78899999999999988754

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.04  E-value=0.0046  Score=44.13  Aligned_cols=18  Identities=28%  Similarity=0.551  Sum_probs=16.3

Q ss_pred             EEECCCCCCHHHHHHHHh
Q psy8700          11 VVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus        11 ~~~G~~~~GKSsli~~l~   28 (200)
                      +++|+.||||||++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            789999999999998873

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.02  E-value=0.0056  Score=40.96  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      ++.=-+++.||++.|||.|+.+++.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            3445689999999999999988765

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.02  E-value=0.0062  Score=41.74  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhhCC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~~   31 (200)
                      ++|.|+||+|||+|...+....
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6889999999999999987644

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0078  Score=41.41  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~~   31 (200)
                      -+.|.|+||+|||+|...++...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46899999999999999987643

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.0089  Score=36.43  Aligned_cols=28  Identities=14%  Similarity=0.343  Sum_probs=23.8

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      |.+..-+.|.+.|..|+|||++.+.|..
T Consensus         1 Pr~kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           1 PRPKQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CGGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             CCCccceEEEEeCCCCCCHHHHHHHHHH
Confidence            3445678999999999999999999865

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.76  E-value=0.013  Score=42.28  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -++++||+|+|||.+++.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578889999999999888754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.71  E-value=0.0096  Score=41.78  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      +++.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999888764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.0071  Score=45.35  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=19.3

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      .-.++|+|.+|+|||+++..++.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            34589999999999999887754

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.58  E-value=0.0094  Score=40.47  Aligned_cols=20  Identities=30%  Similarity=0.662  Sum_probs=16.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~   28 (200)
                      -+.|.|+||+|||+|...++
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46788999999999987664

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.56  E-value=0.0093  Score=44.30  Aligned_cols=21  Identities=24%  Similarity=0.569  Sum_probs=17.6

Q ss_pred             ceEEEEECCCCCCHHHHHHHHh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~   28 (200)
                      .+. +++|+.|||||+++.++.
T Consensus        26 ~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEE-EEECSTTSSHHHHHHHHH
T ss_pred             CEE-EEECCCCCCHHHHHHHHH
Confidence            343 688999999999999974

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.10  E-value=0.01  Score=42.10  Aligned_cols=17  Identities=24%  Similarity=0.528  Sum_probs=13.9

Q ss_pred             EEEECCCCCCHHHH-HHH
Q psy8700          10 VVVFGAGGVGKSSL-VLR   26 (200)
Q Consensus        10 i~~~G~~~~GKSsl-i~~   26 (200)
                      ++|+|+||+||||. +.+
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            68999999999975 444

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.015  Score=40.64  Aligned_cols=20  Identities=35%  Similarity=0.577  Sum_probs=17.0

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q psy8700          10 VVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~   29 (200)
                      .++.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999877653

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.73  E-value=0.013  Score=41.84  Aligned_cols=17  Identities=24%  Similarity=0.610  Sum_probs=13.9

Q ss_pred             EEEECCCCCCHHHH-HHH
Q psy8700          10 VVVFGAGGVGKSSL-VLR   26 (200)
Q Consensus        10 i~~~G~~~~GKSsl-i~~   26 (200)
                      ++|.|++|+||||. +++
T Consensus        27 ~lV~g~aGSGKTt~l~~r   44 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHR   44 (318)
T ss_dssp             EEEEECTTSCHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHH
Confidence            78999999999965 444

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.72  E-value=0.021  Score=40.00  Aligned_cols=25  Identities=16%  Similarity=0.379  Sum_probs=20.7

Q ss_pred             CCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           5 SNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         5 ~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +..--+.+.|+++.|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            3455678899999999999998865

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.029  Score=39.66  Aligned_cols=23  Identities=17%  Similarity=0.291  Sum_probs=20.1

Q ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Q psy8700           7 DYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         7 ~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      --|++++|++|+|||+|+..+..
T Consensus        43 GQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          43 GQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             TCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCeeeEeCCCCCCHHHHHHHHHH
Confidence            35899999999999999888765

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.75  E-value=0.035  Score=40.64  Aligned_cols=19  Identities=32%  Similarity=0.541  Sum_probs=15.6

Q ss_pred             EEEEECCCCCCHHHHHHHH
Q psy8700           9 RVVVFGAGGVGKSSLVLRF   27 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l   27 (200)
                      -.++.|+||+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            3678999999999987554

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.23  E-value=0.037  Score=36.25  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhhCC
Q psy8700          10 VVVFGAGGVGKSSLVLRFVKGT   31 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~~~~   31 (200)
                      |+|+|...||||.+..++....
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSC
T ss_pred             EEEECCCCccHHHHHHHHHhcC
Confidence            6899999999999999987543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.26  E-value=0.069  Score=37.20  Aligned_cols=22  Identities=27%  Similarity=0.582  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVKG   30 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~~   30 (200)
                      =+.+.|++|+|||+|.-.+...
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            3578999999999998777653

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.25  E-value=0.066  Score=36.90  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -|++.|++|+||+.+.+.+-.
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHHH
Confidence            479999999999998888754

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.72  E-value=0.081  Score=37.05  Aligned_cols=22  Identities=32%  Similarity=0.779  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -|++++|++|+|||+|+..+..
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHH
Confidence            5899999999999999888865

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.63  E-value=0.085  Score=36.03  Aligned_cols=19  Identities=21%  Similarity=0.328  Sum_probs=17.2

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy8700          10 VVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~   28 (200)
                      +++.||..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6899999999999999874

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.48  E-value=0.089  Score=35.68  Aligned_cols=19  Identities=26%  Similarity=0.431  Sum_probs=17.2

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy8700          10 VVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus        10 i~~~G~~~~GKSsli~~l~   28 (200)
                      +++.||..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999999864

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=90.29  E-value=0.091  Score=32.75  Aligned_cols=17  Identities=29%  Similarity=0.458  Sum_probs=13.6

Q ss_pred             EEECCCCCCHHH-HHHHH
Q psy8700          11 VVFGAGGVGKSS-LVLRF   27 (200)
Q Consensus        11 ~~~G~~~~GKSs-li~~l   27 (200)
                      +++||-.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            578999999999 55554

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.28  E-value=0.089  Score=36.57  Aligned_cols=20  Identities=30%  Similarity=0.689  Sum_probs=14.7

Q ss_pred             eEE-EEECCCCCCHHHHHHHH
Q psy8700           8 YRV-VVFGAGGVGKSSLVLRF   27 (200)
Q Consensus         8 ~ki-~~~G~~~~GKSsli~~l   27 (200)
                      -+| ++.|..|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            344 45599999999985554

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.06  E-value=0.12  Score=36.04  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=23.9

Q ss_pred             EEEEEeeCCChhHHHHHHHHHHHHHHHhCCCCCCCCCcE-EEEeeCC
Q psy8700          81 AFILVYSCTSRQSLEELRPIWEVIRETKGGANELASIPI-MLVGNKC  126 (200)
Q Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~  126 (200)
                      .+++|.. -+..+.......+..+....        .|+ -+|+|+.
T Consensus       200 ~~~lVt~-pe~~~~~~~~r~~~~l~~~g--------i~~~~vVvN~v  237 (296)
T d1ihua1         200 RLVLVAR-LQKSTLQEVARTHLELAAIG--------LKNQYLVINGV  237 (296)
T ss_dssp             EEEEEEE-SCHHHHHHHHHHHHHHHHHT--------CCCEEEEEEEE
T ss_pred             eeeEecC-cchhHHHHHHHHHHHHHhcC--------CCceEEEEcCC
Confidence            4444443 45667778777777777655        444 5778986

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.84  E-value=0.14  Score=33.96  Aligned_cols=26  Identities=12%  Similarity=0.156  Sum_probs=22.2

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      +.....+++.|++|+|||+++..+..
T Consensus        12 ~~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          12 KSEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             TCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988875

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.45  E-value=0.15  Score=31.20  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=17.0

Q ss_pred             CceEE-EEECCCCCCHHHHHHHHh
Q psy8700           6 NDYRV-VVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus         6 ~~~ki-~~~G~~~~GKSsli~~l~   28 (200)
                      .++++ ++.++.|+|||+++-.+.
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHH
Confidence            34555 668999999998876544

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.19  E-value=0.12  Score=34.21  Aligned_cols=20  Identities=30%  Similarity=0.346  Sum_probs=16.5

Q ss_pred             eEEEEECCC-CCCHHHHHHHH
Q psy8700           8 YRVVVFGAG-GVGKSSLVLRF   27 (200)
Q Consensus         8 ~ki~~~G~~-~~GKSsli~~l   27 (200)
                      -|+.|.|.. ||||||+.-.|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHH
Confidence            378899995 99999986665

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.16  E-value=2.1  Score=26.27  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=16.9

Q ss_pred             CCCceEEEEECCCCCCHHHHHHHHh
Q psy8700           4 QSNDYRVVVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus         4 ~~~~~ki~~~G~~~~GKSsli~~l~   28 (200)
                      ..+.+. +++||-.|||||-+-+..
T Consensus         5 ~~G~l~-lI~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1           5 DHGWVE-VIVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             TCCEEE-EEECSTTSSHHHHHHHHH
T ss_pred             cceeEE-EEEeccccHHHHHHHHHH
Confidence            445565 458999999998655443

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.96  E-value=0.14  Score=36.02  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -|++++|++|+|||+|+..+..
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            5889999999999999877654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=85.82  E-value=0.23  Score=34.51  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      =+-+.|++++|||+|.-.+..
T Consensus        59 itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHH
Confidence            357899999999999887765

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.75  E-value=0.27  Score=34.17  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=17.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q psy8700           9 RVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         9 ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -+.+.|++++|||+|.-.+..
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            357899999999999877654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=84.90  E-value=0.2  Score=35.49  Aligned_cols=14  Identities=50%  Similarity=0.921  Sum_probs=12.7

Q ss_pred             EEECCCCCCHHHHH
Q psy8700          11 VVFGAGGVGKSSLV   24 (200)
Q Consensus        11 ~~~G~~~~GKSsli   24 (200)
                      +++|.+|.|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999964

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=84.04  E-value=0.25  Score=34.49  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=18.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q psy8700           8 YRVVVFGAGGVGKSSLVLRFVK   29 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsli~~l~~   29 (200)
                      -|++++|++|+|||+|+..+..
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHH
T ss_pred             ceEeeccCCCCChHHHHHHHHh
Confidence            5789999999999999876544

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=83.06  E-value=0.23  Score=35.30  Aligned_cols=15  Identities=47%  Similarity=0.862  Sum_probs=13.2

Q ss_pred             EEEECCCCCCHHHHH
Q psy8700          10 VVVFGAGGVGKSSLV   24 (200)
Q Consensus        10 i~~~G~~~~GKSsli   24 (200)
                      -+++|.+|.|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999964

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.66  E-value=0.29  Score=34.82  Aligned_cols=14  Identities=50%  Similarity=0.921  Sum_probs=12.8

Q ss_pred             EEECCCCCCHHHHH
Q psy8700          11 VVFGAGGVGKSSLV   24 (200)
Q Consensus        11 ~~~G~~~~GKSsli   24 (200)
                      +++|.+|.|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999975

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=81.24  E-value=1  Score=25.65  Aligned_cols=31  Identities=23%  Similarity=0.450  Sum_probs=26.0

Q ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCC
Q psy8700           2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTF   32 (200)
Q Consensus         2 ~~~~~~~ki~~~G~~~~GKSsli~~l~~~~~   32 (200)
                      |+-.+.-+|-|+|-.|+|-|.|...|....+
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~   33 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGY   33 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTC
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCC
Confidence            5566778999999999999999888877554

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=80.54  E-value=0.3  Score=29.47  Aligned_cols=16  Identities=25%  Similarity=0.175  Sum_probs=12.5

Q ss_pred             eEEEEECCCCCCHHHH
Q psy8700           8 YRVVVFGAGGVGKSSL   23 (200)
Q Consensus         8 ~ki~~~G~~~~GKSsl   23 (200)
                      -.+++.+++|+|||..
T Consensus         8 ~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             CEEEECCCTTSSTTTT
T ss_pred             CcEEEEcCCCCChhHH
Confidence            3567778999999943

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.16  E-value=0.67  Score=28.33  Aligned_cols=18  Identities=39%  Similarity=0.480  Sum_probs=14.1

Q ss_pred             EEECCCCCCHHHHHHHHh
Q psy8700          11 VVFGAGGVGKSSLVLRFV   28 (200)
Q Consensus        11 ~~~G~~~~GKSsli~~l~   28 (200)
                      +++||-.|||||-+-+..
T Consensus         6 li~GpMfsGKTt~Li~~~   23 (133)
T d1xbta1           6 VILGPMFSGKSTELMRRV   23 (133)
T ss_dssp             EEECCTTSCHHHHHHHHH
T ss_pred             EEEecccCHHHHHHHHHH
Confidence            568999999998755543