Psyllid ID: psy8729

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
GVKESDQLYNNLLKPGGSKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLVNVLSPRHCPKLYDSPALILFIVN
Secondary Structure (PSIPRED)
ccccHHHHHHHccccccccccccccccccccccccEEEEEEcccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHccccccEEcccccHHHHHHHHccccccccEEEEccccccccEEEccHHHHHHHcccccccccccccHHHHcccccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHccccHHHHHHccccccEEEcccccEEcHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEEEEccccHHHHHHHHHccccEEcccccHHHHHHHHHcccccccEEEEEcccccccccEEEccHHHHHHHccccccccccHHHHHHHHHHHHHHHccccEEEEEEEc
Coil and Loop (DISEMBL)
GVKESDQLYNNllkpggskgakktyniglaegtVTTKVLSYIESCQVIGLyfsahwcppckaftpQLIETYRKLKEDGYQFEIIFVSsdrsessyqsylsgmpwpaipyasETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEArhelsedpdgeffpwppklvnvlsprhcpklydspalILFIVN
Flexible Loop (DISEMBL)
GVKESDQLYNNLlkpggskgakktYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHelsedpdgeffpWPPKLVNVLSPRHCPKLYDSPALILFIVN
Low Complexity Region (SEG)
GVKESDQLYNNLLKPGGSKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVssdrsessyqsylsGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLVNVLSPRHCPKLYDSPALILFIVN
Disordered region (IsUnstruct)
**********************KTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS******YQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARH******DGEFFPWPPKLVNVLSPRHCPKLYDSPALILFIV*
Disordered Region (DISOPRED)
*****************************************IESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLVN*********LYDSPALILFIVN
Disordered Region (DISEMBL)
GVKESDQLYNNLLKPGGSKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD*********LSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLVNVLSPRHCPKLYDSPALILFIVN
Disordered Region (DISPRO)
GVKESDQLYNNLLKPGGSKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLVNVLSPRHCPKLYDSPALILFIVN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GVKESDQLYNNLLKPGGSKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLVNVLSPRHCPKLYDSPALILFIVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q503L9	418	Nucleoredoxin OS=Danio re	yes	N/A	0.721	0.327	0.507	8e-37
Q6DKJ4	435	Nucleoredoxin OS=Homo sap	yes	N/A	0.721	0.314	0.507	1e-35
P97346	435	Nucleoredoxin OS=Mus musc	yes	N/A	0.721	0.314	0.507	2e-35
A6QLU8	435	Nucleoredoxin OS=Bos taur	yes	N/A	0.721	0.314	0.507	2e-35
Q6GM16	414	Nucleoredoxin OS=Xenopus	N/A	N/A	0.721	0.330	0.478	1e-33
O80763	578	Probable nucleoredoxin 1	yes	N/A	0.752	0.247	0.388	1e-24
Q7Y0E8	569	Probable nucleoredoxin 1-	yes	N/A	0.668	0.223	0.406	2e-24
Q7Y0F2	581	Probable nucleoredoxin 1-	no	N/A	0.436	0.142	0.5	4e-24
Q7XPE8	471	Probable nucleoredoxin 3	no	N/A	0.547	0.220	0.458	1e-22
O77404	144	Tryparedoxin OS=Trypanoso	N/A	N/A	0.6	0.791	0.420	1e-21

>sp|Q503L9|NXN_DANRE Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1

 Score =  153 bits (386), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 98/142 (69%), Gaps = 5/142 (3%)

Query: 48  IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI 107
           +G+YFSAHWCPPC++ T  L+E+YRK+KE G +FEI+FVS+DRSE S+  Y S MPW A+
Sbjct: 179 VGVYFSAHWCPPCRSLTRVLVESYRKVKETGQKFEIVFVSADRSEESFTQYFSEMPWLAV 238

Query: 108 PYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKL 166
           PY+ E R+S L  LY + GIP+LILL  E      +IT + R E+  DPD   FPW P+ 
Sbjct: 239 PYSDEARRSRLNRLYGIQGIPTLILLDTEG----HMITRQGRVEILNDPDCGLFPWHPRP 294

Query: 167 VNVLSPRHCPKLYDSPALILFI 188
           V  LS  +  +L++ P L+LF+
Sbjct: 295 VLELSESNAVQLHEGPCLVLFV 316

Functions as a redox-dependent negative regulator of the Wnt signaling pathway.
Danio rerio (taxid: 7955)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 8

>sp|Q6DKJ4|NXN_HUMAN Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 96/142 (67%), Gaps = 5/142 (3%)

Query: 48  IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI 107
           +G+YFSAHWCPPC++ T  L+E+YRK+KE G  FEIIFVS+DRSE S++ Y S MPW A+
Sbjct: 196 VGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAV 255

Query: 108 PYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKL 166
           PY  E R+S L  LY + GIP+LI+L  +     +VIT + R E+  D D   FPW PK 
Sbjct: 256 PYTDEARRSRLNRLYGIQGIPTLIMLDPQG----EVITRQGRVEVLNDEDCREFPWHPKP 311

Query: 167 VNVLSPRHCPKLYDSPALILFI 188
           V  LS  +  +L + P L+LF+
Sbjct: 312 VLELSDSNAAQLNEGPCLVLFV 333

Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|P97346|NXN_MOUSE Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 97/142 (68%), Gaps = 5/142 (3%)

Query: 48  IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI 107
           +G+YFSAHWCPPC++ T  L+E+YRK+KE G +FEIIFVS+DRSE S++ Y S MPW A+
Sbjct: 196 VGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSADRSEESFKQYFSEMPWLAV 255

Query: 108 PYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKL 166
           PY  E R+S L  LY + GIP+LI+L  +     +VIT + R E+  D D   FPW PK 
Sbjct: 256 PYTDEARRSRLNRLYGIQGIPTLIVLDPQG----EVITRQGRVEVLNDEDCREFPWHPKP 311

Query: 167 VNVLSPRHCPKLYDSPALILFI 188
           V  LS  +  +L + P L+LF+
Sbjct: 312 VLELSDSNAVQLNEGPCLVLFV 333

Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|A6QLU8|NXN_BOVIN Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1

 Score =  148 bits (373), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 97/142 (68%), Gaps = 5/142 (3%)

Query: 48  IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI 107
           +G+YFSAHWCPPC++ T  L+E+YRK+KE G +FEIIFVS+DRSE S++ Y S MPW A+
Sbjct: 196 VGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDSFKQYFSEMPWLAV 255

Query: 108 PYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKL 166
           PY  E R+S L  LY + GIP+LI+L  +     +VIT + R E+  D D   FPW PK 
Sbjct: 256 PYTDEARRSRLNRLYGIQGIPTLIVLDPQG----EVITRQGRVEVLNDEDCRGFPWHPKP 311

Query: 167 VNVLSPRHCPKLYDSPALILFI 188
           V  LS  +  +L + P L+LF+
Sbjct: 312 VLELSDSNAVQLNEGPCLVLFV 333

Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q6GM16|NXN_XENLA Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 98/142 (69%), Gaps = 5/142 (3%)

Query: 48  IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI 107
           +G+YFSA+WCPPC++ T  L+E+YRK+KE G +FEI+ VS+DRSE S++ Y S MPW A+
Sbjct: 175 VGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSADRSEESFKQYFSEMPWLAV 234

Query: 108 PYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKL 166
           PY+ E R+S L  LY + GIP+LI+L  +     +VIT + R E+  D D + FPW PK 
Sbjct: 235 PYSDEARRSRLNRLYGIQGIPNLIILDPKG----EVITRQGRVEVLRDIDCKEFPWHPKP 290

Query: 167 VNVLSPRHCPKLYDSPALILFI 188
           V  L+  +  +L + P L+LF+
Sbjct: 291 VVELTELNAVQLNEGPCLVLFV 312

Functions as a redox-dependent negative regulator of the Wnt signaling pathway.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 80/157 (50%), Gaps = 14/157 (8%)

Query: 32  GTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRS 91
           G    KVL      + I +YFSAHWCPPC+AFTP+L+E Y+++KE    FE+IF+SSDR 
Sbjct: 350 GKDGAKVLVSDLVGKTILMYFSAHWCPPCRAFTPKLVEVYKQIKERNEAFELIFISSDRD 409

Query: 92  ESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLA--------------VEAG 137
           + S+  Y S MPW A+P+    + SLA  + V GIP L  L               V  G
Sbjct: 410 QESFDEYYSQMPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHG 469

Query: 138 GRLDVITTEARHELSEDPDGEFFPWPPKLVNVLSPRH 174
                 T E   E+    D     WP K+ +VL   H
Sbjct: 470 ADAYPFTEERLKEIEAKYDEIAKDWPKKVKHVLHEEH 506

Probable thiol-disulfide oxidoreductase required for pollen tube growth and pollen function in the pistil. Seems not to be required for in vitro pollen tube growth. May be involved in the generation of lipid signaling molecules in pistil.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica GN=Os03g0405500 PE=2 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 77/145 (53%), Gaps = 18/145 (12%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
           + + LYFSA WC PC+AF P+L++ Y K+KE    FEIIF+SSDR +SSY  + SGMPW 
Sbjct: 360 KTVLLYFSAKWCGPCRAFLPKLVDEYNKIKEKHNDFEIIFISSDRDQSSYDEFFSGMPWL 419

Query: 106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDV----------------ITTEARH 149
           A+P   E +Q L+  + V GIPSL+  A+ A GR                    T E   
Sbjct: 420 ALPLGDERKQHLSKTFRVRGIPSLV--AIGADGRTVARDAKTPLTAHGADAFPFTEERLL 477

Query: 150 ELSEDPDGEFFPWPPKLVNVLSPRH 174
           E+    D     WP KL + L   H
Sbjct: 478 EMERKIDEMAKGWPGKLKHELHDEH 502

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica GN=Os03g0405900 PE=2 SV=1

 Score =  111 bits (277), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 62/88 (70%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
           + + LYFSA WCPPC+AF P+L+  Y K+KE    FEI+F+SSDR +SSY  + SGMPW 
Sbjct: 367 KTVLLYFSAKWCPPCRAFLPKLVNEYNKIKEKHNDFEIVFISSDREQSSYDEFFSGMPWL 426

Query: 106 AIPYASETRQSLASLYNVHGIPSLILLA 133
           A+P   E +Q L+ ++ + GIPSL+ + 
Sbjct: 427 ALPLGDERKQQLSKIFKITGIPSLVAIG 454

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica GN=Os04g0608600 PE=2 SV=2

 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 71/109 (65%), Gaps = 5/109 (4%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKE-DGYQFEIIFVSSDRSESSYQSYLSGMPW 104
           + IGLYF AHWCPPC+AFT QL E Y +LK      F++IF+S DR+E  +Q+ LS MPW
Sbjct: 205 KTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEFQASLSAMPW 264

Query: 105 PAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSE 153
            AIPY+  T Q L+ ++ + GIP+L++L  +      V  T+ R  +S+
Sbjct: 265 FAIPYSDTTVQELSRIFTIKGIPTLLILGPDG----KVFKTDGRRIISK 309

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|O77404|TYPX_TRYBB Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 5/119 (4%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
           + + LYFSA WCPPC+ FTP L E Y K       FE++ +S D +ES +  Y   MPW 
Sbjct: 29  KTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENESDFHDYYGKMPWL 87

Query: 106 AIPYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWP 163
           A+P+   +  S L   + V  IP+LI +  + G    +I T+AR  + EDPDG  FPWP
Sbjct: 88  ALPFDQRSTVSELGKTFGVESIPTLITINADTGA---IIGTQARTRVIEDPDGANFPWP 143

Acts as a thiol-disulfide oxidoreductase. It is spontaneously reduced by trypanothione.

Trypanosoma brucei brucei (taxid: 5702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
242009811	420	nucleoredoxin, putative [Pediculus human	0.731	0.330	0.576	4e-45
156544401	495	PREDICTED: nucleoredoxin-like [Nasonia v	0.715	0.274	0.546	6e-40
350405655	506	PREDICTED: nucleoredoxin-like [Bombus im	0.715	0.268	0.531	1e-39
340711132	506	PREDICTED: nucleoredoxin-like [Bombus te	0.715	0.268	0.531	2e-39
332025012	494	Nucleoredoxin [Acromyrmex echinatior]	0.715	0.275	0.524	4e-39
380013781	502	PREDICTED: nucleoredoxin-like [Apis flor	0.715	0.270	0.524	5e-39
328789980	503	PREDICTED: nucleoredoxin-like [Apis mell	0.715	0.270	0.524	5e-39
307205669	502	Nucleoredoxin [Harpegnathos saltator]	0.715	0.270	0.524	5e-39
383852396	504	PREDICTED: nucleoredoxin-like [Megachile	0.715	0.269	0.524	7e-39
322787073	410	hypothetical protein SINV_15387 [Solenop	0.715	0.331	0.517	3e-38

>gi|242009811|ref|XP_002425676.1| nucleoredoxin, putative [Pediculus humanus corporis] gi|212509569|gb|EEB12938.1| nucleoredoxin, putative [Pediculus humanus corporis]

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 83/144 (57%), Positives = 110/144 (76%), Gaps = 5/144 (3%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
           Q+IG YFSAHWCPPC+ FTPQLIETY +LK+    FEIIFVSSDRS+ SY++YL  MPW 
Sbjct: 233 QIIGFYFSAHWCPPCRGFTPQLIETYNRLKKMRKNFEIIFVSSDRSQESYKTYLQTMPWL 292

Query: 106 AIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPP 164
           A+PY+ SE R+ LASL+ + GIP+L+++  +      VITT+ R E+++DP+G+ FPW P
Sbjct: 293 AVPYSESECRRELASLFGIQGIPTLVIVDTDGT----VITTDGRGEINDDPNGQMFPWRP 348

Query: 165 KLVNVLSPRHCPKLYDSPALILFI 188
           +LVN L+ RH  KL D PA+ILF+
Sbjct: 349 RLVNTLTERHSAKLQDIPAVILFV 372

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544401|ref|XP_001607483.1| PREDICTED: nucleoredoxin-like [Nasonia vitripennis]

 Score =  169 bits (427), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 105/141 (74%), Gaps = 5/141 (3%)

Query: 49  GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
           G+YFSAHWCPPCKAFTPQLI+TY++++E G+ FE+IFVSSDRSE SY++Y   MPW  IP
Sbjct: 242 GVYFSAHWCPPCKAFTPQLIDTYQRIRERGHDFEVIFVSSDRSEESYKTYTDTMPWLRIP 301

Query: 109 YAS-ETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLV 167
           +A  E RQ LA   +V  IP+L++L      R ++IT E R E+ EDP+G  FPW  +LV
Sbjct: 302 FAQEERRQKLARALDVQAIPTLVIL----DPRDNIITLEGRTEVLEDPEGLNFPWTSRLV 357

Query: 168 NVLSPRHCPKLYDSPALILFI 188
           N+L+ ++   L+D+PA+ILF+
Sbjct: 358 NILTEKYATSLHDAPAIILFV 378

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405655|ref|XP_003487507.1| PREDICTED: nucleoredoxin-like [Bombus impatiens]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/141 (53%), Positives = 105/141 (74%), Gaps = 5/141 (3%)

Query: 49  GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
           G+YFSAHWCPPCKAFTPQL++TY++++E G+ FE+IFVSSDRSE SY  Y+  MPW  IP
Sbjct: 249 GVYFSAHWCPPCKAFTPQLVDTYQRIRERGHDFEVIFVSSDRSEESYNVYIETMPWLRIP 308

Query: 109 YAS-ETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLV 167
           ++  E R+ LAS  +V  IP+L++L      R ++IT + R EL EDP+G  FPW  +LV
Sbjct: 309 FSQEERRRKLASALDVQAIPTLVIL----DPRDNIITLDGRAELIEDPEGLNFPWTSRLV 364

Query: 168 NVLSPRHCPKLYDSPALILFI 188
           N+L+ ++   L+D+PA+ILF+
Sbjct: 365 NILTEKYAASLHDAPAIILFV 385

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711132|ref|XP_003394134.1| PREDICTED: nucleoredoxin-like [Bombus terrestris]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/141 (53%), Positives = 105/141 (74%), Gaps = 5/141 (3%)

Query: 49  GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
           G+YFSAHWCPPCKAFTPQL++TY++++E G+ FE+IFVSSDRSE SY  Y+  MPW  IP
Sbjct: 249 GVYFSAHWCPPCKAFTPQLVDTYQRIRERGHDFEVIFVSSDRSEESYNVYIETMPWLRIP 308

Query: 109 YAS-ETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLV 167
           ++  E R+ LAS  +V  IP+L++L      R ++IT + R EL EDP+G  FPW  +LV
Sbjct: 309 FSQEERRRKLASALDVQAIPTLVIL----DPRDNIITLDGRAELIEDPEGLNFPWTSRLV 364

Query: 168 NVLSPRHCPKLYDSPALILFI 188
           N+L+ ++   L+D+PA+ILF+
Sbjct: 365 NILTEKYAASLHDAPAIILFV 385

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025012|gb|EGI65199.1| Nucleoredoxin [Acromyrmex echinatior]

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 104/141 (73%), Gaps = 5/141 (3%)

Query: 49  GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
           G+YFSAHWCPPCKAFTPQL++TY++++E G+ FE+IFVSSDRSE SY +Y   MPW  IP
Sbjct: 235 GIYFSAHWCPPCKAFTPQLVDTYQRIQERGHDFEVIFVSSDRSEDSYNAYTETMPWLRIP 294

Query: 109 Y-ASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLV 167
           +   E R+ LA  ++V  IP+L++L      R ++IT + R EL EDP+G  FPW  +LV
Sbjct: 295 FNQEERRRKLARAFDVQAIPTLVIL----DPRDNIITLDGRAELIEDPEGLNFPWSSRLV 350

Query: 168 NVLSPRHCPKLYDSPALILFI 188
           N+L+ ++   L+D+PA+ILF+
Sbjct: 351 NILTEKYATSLHDAPAIILFV 371

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013781|ref|XP_003690927.1| PREDICTED: nucleoredoxin-like [Apis florea]

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 104/141 (73%), Gaps = 5/141 (3%)

Query: 49  GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
           G+YFSAHWCPPCKAFTPQL++TY++++E G+ FE+IFVSSDRSE SY  Y+  MPW  IP
Sbjct: 245 GVYFSAHWCPPCKAFTPQLVDTYQRIRERGHDFEVIFVSSDRSEESYNVYIETMPWLRIP 304

Query: 109 YAS-ETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLV 167
           ++  E R+ LA   +V  IP+L++L      R ++IT + R EL EDP+G  FPW  +LV
Sbjct: 305 FSQEERRRKLARALDVQAIPTLVIL----DPRDNIITLDGRAELIEDPEGLNFPWTSRLV 360

Query: 168 NVLSPRHCPKLYDSPALILFI 188
           N+L+ ++   L+D+PA+ILF+
Sbjct: 361 NILTEKYATSLHDAPAIILFV 381

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789980|ref|XP_003251353.1| PREDICTED: nucleoredoxin-like [Apis mellifera]

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 104/141 (73%), Gaps = 5/141 (3%)

Query: 49  GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
           G+YFSAHWCPPCKAFTPQL++TY++++E G+ FE+IFVSSDRSE SY  Y+  MPW  IP
Sbjct: 246 GVYFSAHWCPPCKAFTPQLVDTYQRIRERGHDFEVIFVSSDRSEESYNVYIETMPWLRIP 305

Query: 109 YAS-ETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLV 167
           ++  E R+ LA   +V  IP+L++L      R ++IT + R EL EDP+G  FPW  +LV
Sbjct: 306 FSQEERRRKLARALDVQAIPTLVIL----DPRDNIITLDGRAELIEDPEGLNFPWTSRLV 361

Query: 168 NVLSPRHCPKLYDSPALILFI 188
           N+L+ ++   L+D+PA+ILF+
Sbjct: 362 NILTEKYATSLHDAPAIILFV 382

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205669|gb|EFN83931.1| Nucleoredoxin [Harpegnathos saltator]

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 104/141 (73%), Gaps = 5/141 (3%)

Query: 49  GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
           G+YFSAHWCPPCKAFTPQL++TY++++E G+ FE+IFVSSDRSE SY +Y   MPW  IP
Sbjct: 244 GVYFSAHWCPPCKAFTPQLVDTYQRIRERGHDFEVIFVSSDRSEDSYNAYTETMPWLRIP 303

Query: 109 YAS-ETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLV 167
           ++  E R+ LA   +V  IP+L++L      R ++IT + R EL EDP+G  FPW  +LV
Sbjct: 304 FSQEERRRKLARALDVQAIPTLVIL----DPRDNIITLDGRTELIEDPEGLNFPWTSRLV 359

Query: 168 NVLSPRHCPKLYDSPALILFI 188
           N+L+ ++   L+D+PA+ILF+
Sbjct: 360 NILTEKYATSLHDAPAIILFV 380

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852396|ref|XP_003701714.1| PREDICTED: nucleoredoxin-like [Megachile rotundata]

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 103/141 (73%), Gaps = 5/141 (3%)

Query: 49  GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
           G+YFSAHWCPPCKAFTPQL++TY++++E G+ FE+IFVSSDRSE SY  Y+  MPW  IP
Sbjct: 246 GVYFSAHWCPPCKAFTPQLVDTYQRIRERGHDFEVIFVSSDRSEESYNVYIETMPWLRIP 305

Query: 109 YAS-ETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLV 167
           +   E R+ LA   +V  IP+L++L      R ++IT + R EL EDP+G  FPW  +LV
Sbjct: 306 FTQEERRKKLARALDVQAIPTLVIL----DPRDNIITLDGRAELIEDPEGLNFPWTSRLV 361

Query: 168 NVLSPRHCPKLYDSPALILFI 188
           N+L+ ++   L+D+PA+ILF+
Sbjct: 362 NILTEKYATSLHDAPAIILFV 382

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787073|gb|EFZ13297.1| hypothetical protein SINV_15387 [Solenopsis invicta]

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/141 (51%), Positives = 103/141 (73%), Gaps = 5/141 (3%)

Query: 49  GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
           G+YFSAHWCPPCKAFTPQL++TY +++E G+ FE+IFVSSDRSE SY +Y   MPW  IP
Sbjct: 89  GVYFSAHWCPPCKAFTPQLVDTYERIRERGHDFEVIFVSSDRSEDSYNAYTETMPWLRIP 148

Query: 109 Y-ASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKLV 167
           +   E R+ LA  ++V  IP+L++L +    R ++IT + R EL EDP+G  FPW  + V
Sbjct: 149 FNQEERRRKLARAFDVQAIPTLVILDL----RDNIITLDGRSELIEDPEGLNFPWSNRPV 204

Query: 168 NVLSPRHCPKLYDSPALILFI 188
           N+L+ ++   L+D+PA+ILF+
Sbjct: 205 NILTEKYATSLHDAPAIILFV 225

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
ZFIN|ZDB-GENE-050522-75	418	nxn "nucleoredoxin" [Danio rer	0.721	0.327	0.457	2.3e-30
MGI|MGI:109331	435	Nxn "nucleoredoxin" [Mus muscu	0.721	0.314	0.450	7.1e-29
UNIPROTKB|Q6DKJ4	435	NXN "Nucleoredoxin" [Homo sapi	0.721	0.314	0.450	7.1e-29
RGD|1310489	435	Nxn "nucleoredoxin" [Rattus no	0.721	0.314	0.450	9.1e-29
UNIPROTKB|A6QLU8	435	NXN "Nucleoredoxin" [Bos tauru	0.721	0.314	0.450	9.1e-29
UNIPROTKB|I3LEF2	328	NXN "Uncharacterized protein"	0.721	0.417	0.450	9.1e-29
UNIPROTKB|F1NG23	328	NXN "Uncharacterized protein"	0.721	0.417	0.443	2.4e-28
UNIPROTKB|Q6GM16	414	nxn "Nucleoredoxin" [Xenopus l	0.721	0.330	0.429	2.2e-27
TAIR|locus:2195623	578	AT1G60420 [Arabidopsis thalian	0.736	0.242	0.324	1.4e-17
TAIR|locus:2128141	392	AT4G31240 [Arabidopsis thalian	0.542	0.262	0.398	3.6e-17

ZFIN|ZDB-GENE-050522-75 nxn "nucleoredoxin" [Danio rerio (taxid:7955)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 65/142 (45%), Positives = 89/142 (62%)

Query:    48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAI 107
             +G+YFSAHWCPPC++ T  L+E+YRK+KE G +FEI+FV               MPW A+
Sbjct:   179 VGVYFSAHWCPPCRSLTRVLVESYRKVKETGQKFEIVFVSADRSEESFTQYFSEMPWLAV 238

Query:   108 PYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKL 166
             PY+ E R+S L  LY + GIP+LILL  E  G +  IT + R E+  DPD   FPW P+ 
Sbjct:   239 PYSDEARRSRLNRLYGIQGIPTLILLDTE--GHM--ITRQGRVEILNDPDCGLFPWHPRP 294

Query:   167 VNVLSPRHCPKLYDSPALILFI 188
             V  LS  +  +L++ P L+LF+
Sbjct:   295 VLELSESNAVQLHEGPCLVLFV 316

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

MGI|MGI:109331 Nxn "nucleoredoxin" [Mus musculus (taxid:10090)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 64/142 (45%), Positives = 86/142 (60%)

Query:    48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAI 107
             +G+YFSAHWCPPC++ T  L+E+YRK+KE G +FEIIFV               MPW A+
Sbjct:   196 VGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSADRSEESFKQYFSEMPWLAV 255

Query:   108 PYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKL 166
             PY  E R+S L  LY + GIP+LI+L  +     +VIT + R E+  D D   FPW PK 
Sbjct:   256 PYTDEARRSRLNRLYGIQGIPTLIVLDPQG----EVITRQGRVEVLNDEDCREFPWHPKP 311

Query:   167 VNVLSPRHCPKLYDSPALILFI 188
             V  LS  +  +L + P L+LF+
Sbjct:   312 VLELSDSNAVQLNEGPCLVLFV 333

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IMP

GO:0031397 "negative regulation of protein ubiquitination" evidence=IMP

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0072358 "cardiovascular system development" evidence=IMP

UNIPROTKB|Q6DKJ4 NXN "Nucleoredoxin" [Homo sapiens (taxid:9606)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 64/142 (45%), Positives = 85/142 (59%)

Query:    48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAI 107
             +G+YFSAHWCPPC++ T  L+E+YRK+KE G  FEIIFV               MPW A+
Sbjct:   196 VGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAV 255

Query:   108 PYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKL 166
             PY  E R+S L  LY + GIP+LI+L  +     +VIT + R E+  D D   FPW PK 
Sbjct:   256 PYTDEARRSRLNRLYGIQGIPTLIMLDPQG----EVITRQGRVEVLNDEDCREFPWHPKP 311

Query:   167 VNVLSPRHCPKLYDSPALILFI 188
             V  LS  +  +L + P L+LF+
Sbjct:   312 VLELSDSNAAQLNEGPCLVLFV 333

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

RGD|1310489 Nxn "nucleoredoxin" [Rattus norvegicus (taxid:10116)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 64/142 (45%), Positives = 86/142 (60%)

Query:    48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAI 107
             +G+YFSAHWCPPC++ T  L+E+YRK+KE G +FEIIFV               MPW A+
Sbjct:   196 VGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEESFKQYFSEMPWLAV 255

Query:   108 PYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKL 166
             PY  E R+S L  LY + GIP+LI+L  +     +VIT + R E+  D D   FPW PK 
Sbjct:   256 PYTDEARRSRLNRLYGIQGIPTLIVLDPQG----EVITRQGRVEVLNDEDCREFPWHPKP 311

Query:   167 VNVLSPRHCPKLYDSPALILFI 188
             V  LS  +  +L + P L+LF+
Sbjct:   312 VLELSDSNAVQLNEGPCLVLFV 333

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISO

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0072358 "cardiovascular system development" evidence=ISO

UNIPROTKB|A6QLU8 NXN "Nucleoredoxin" [Bos taurus (taxid:9913)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 64/142 (45%), Positives = 86/142 (60%)

Query:    48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAI 107
             +G+YFSAHWCPPC++ T  L+E+YRK+KE G +FEIIFV               MPW A+
Sbjct:   196 VGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDSFKQYFSEMPWLAV 255

Query:   108 PYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKL 166
             PY  E R+S L  LY + GIP+LI+L  +     +VIT + R E+  D D   FPW PK 
Sbjct:   256 PYTDEARRSRLNRLYGIQGIPTLIVLDPQG----EVITRQGRVEVLNDEDCRGFPWHPKP 311

Query:   167 VNVLSPRHCPKLYDSPALILFI 188
             V  LS  +  +L + P L+LF+
Sbjct:   312 VLELSDSNAVQLNEGPCLVLFV 333

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|I3LEF2 NXN "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 64/142 (45%), Positives = 86/142 (60%)

Query:    48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAI 107
             +G+YFSAHWCPPC++ T  L+E+YRK+KE G +FEIIFV               MPW A+
Sbjct:    89 VGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDSFKQYFSEMPWLAV 148

Query:   108 PYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKL 166
             PY  E R+S L  LY + GIP+LI+L  +     +VIT + R E+  D D   FPW PK 
Sbjct:   149 PYTDEARRSRLNRLYGIQGIPTLIVLDPQG----EVITRQGRVEVLNDEDCRGFPWHPKP 204

Query:   167 VNVLSPRHCPKLYDSPALILFI 188
             V  LS  +  +L + P L+LF+
Sbjct:   205 VLELSDSNAVQLNEGPCLVLFV 226

GO:0072358 "cardiovascular system development" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

UNIPROTKB|F1NG23 NXN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 63/142 (44%), Positives = 89/142 (62%)

Query:    48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAI 107
             +G+YFSAHWCPPC++ T  L+E+YRK+KE G +FEI+FV               MPW A+
Sbjct:    89 VGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEILFVSADRSEDSFKQYFSEMPWVAV 148

Query:   108 PYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKL 166
             PYA E R+S L  LY + GIP+LI+L  ++ G  +VIT + R E+  D +   FPW PK 
Sbjct:   149 PYADEARRSRLNRLYGIQGIPTLIVL--DSQG--EVITRQGRVEVLNDIECREFPWHPKP 204

Query:   167 VNVLSPRHCPKLYDSPALILFI 188
             V  L+  +  +L + P L+LF+
Sbjct:   205 VLELTDSNAVQLNEGPCLVLFV 226

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=IEA

GO:0072358 "cardiovascular system development" evidence=IEA

UNIPROTKB|Q6GM16 nxn "Nucleoredoxin" [Xenopus laevis (taxid:8355)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 61/142 (42%), Positives = 88/142 (61%)

Query:    48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWPAI 107
             +G+YFSA+WCPPC++ T  L+E+YRK+KE G +FEI+ V               MPW A+
Sbjct:   175 VGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSADRSEESFKQYFSEMPWLAV 234

Query:   108 PYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPKL 166
             PY+ E R+S L  LY + GIP+LI+L  +  G  +VIT + R E+  D D + FPW PK 
Sbjct:   235 PYSDEARRSRLNRLYGIQGIPNLIIL--DPKG--EVITRQGRVEVLRDIDCKEFPWHPKP 290

Query:   167 VNVLSPRHCPKLYDSPALILFI 188
             V  L+  +  +L + P L+LF+
Sbjct:   291 VVELTELNAVQLNEGPCLVLFV 312

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

TAIR|locus:2195623 AT1G60420 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 47/145 (32%), Positives = 75/145 (51%)

Query:    46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWP 105
             + I +YFSAHWCPPC+AFTP+L+E Y+++KE    FE+IF+               MPW 
Sbjct:   364 KTILMYFSAHWCPPCRAFTPKLVEVYKQIKERNEAFELIFISSDRDQESFDEYYSQMPWL 423

Query:   106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPK 165
             A+P+    + SLA  + V GIP L  L    G     +T EAR +L      + +P+  +
Sbjct:   424 ALPFGDPRKASLAKTFKVGGIPMLAAL----GPTGQTVTKEAR-DLVVAHGADAYPFTEE 478

Query:   166 LVNVLSPRHCPKLYDSPALILFIVN 190
              +  +  ++     D P  +  +++
Sbjct:   479 RLKEIEAKYDEIAKDWPKKVKHVLH 503

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009860 "pollen tube growth" evidence=IMP

GO:0010183 "pollen tube guidance" evidence=IMP

GO:0080092 "regulation of pollen tube growth" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2128141 AT4G31240 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 3.6e-17, P = 3.6e-17
 Identities = 43/108 (39%), Positives = 59/108 (54%)

Query:    46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKE-DGYQFEIIFVXXXXXXXXXXXXXXGMPW 104
             + IGLYF AHWCPP ++FT QL++ Y +L   D   FE+I +               MPW
Sbjct:   204 KTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSFEVILISTDRDSREFNINMTNMPW 263

Query:   105 PAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELS 152
              AIPY   TRQ L  ++NV  IP+L+++  E       +TT AR  +S
Sbjct:   264 LAIPYEDRTRQDLCRIFNVKLIPALVIIGPEE----KTVTTNAREMVS 307

GO:0005634 "nucleus" evidence=ISM

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P97346	NXN_MOUSE	1, ., 8, ., 1, ., 8	0.5070	0.7210	0.3149	yes	N/A
Q503L9	NXN_DANRE	1, ., 8, ., 1, ., 8	0.5070	0.7210	0.3277	yes	N/A
A6QLU8	NXN_BOVIN	1, ., 8, ., 1, ., 8	0.5070	0.7210	0.3149	yes	N/A
Q6DKJ4	NXN_HUMAN	1, ., 8, ., 1, ., 8	0.5070	0.7210	0.3149	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.8.1.8	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	190
cd02964	132	cd02964, TryX_like_family, Tryparedoxin (TryX)-lik	8e-54
cd03009	131	cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l	5e-53
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	2e-26
cd03008	146	cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like	5e-13
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	1e-11
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	2e-08
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	2e-07
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	4e-05
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	7e-05
PRK03147	173	PRK03147, PRK03147, thiol-disulfide oxidoreductase	1e-04
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	8e-04
pfam08534	142	pfam08534, Redoxin, Redoxin	0.001
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	0.002
PRK14018	521	PRK14018, PRK14018, trifunctional thioredoxin/meth	0.004

>gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

 Score =  167 bits (425), Expect = 8e-54
 Identities = 63/118 (53%), Positives = 81/118 (68%), Gaps = 6/118 (5%)

Query: 47  VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM-PWP 105
            +GLYFSA WCPPC+AFTP+L+E Y KLKE+G  FEI+FVS DRSE S+  Y S M PW 
Sbjct: 19  TVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWL 78

Query: 106 AIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
           A+P+   E R+ L   + V GIP+L++  ++  G  DV+TT AR E+ EDP    FPW
Sbjct: 79  AVPFEDEELRELLEKQFKVEGIPTLVV--LKPDG--DVVTTNARDEVEEDPGACAFPW 132

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132

>gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

 Score =  165 bits (420), Expect = 5e-53
 Identities = 58/116 (50%), Positives = 79/116 (68%), Gaps = 6/116 (5%)

Query: 48  IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI 107
           +GLYFSA WCPPC+AFTP+L+E Y KLKE G  FEI+F+S DR E S+  Y S MPW A+
Sbjct: 21  VGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80

Query: 108 PYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
           P++  E R  L   + + GIP+LI+L  +A G  +V+TT+AR  + E    + FP+
Sbjct: 81  PFSDRERRSRLNRTFKIEGIPTLIIL--DADG--EVVTTDARELVLE-YGADAFPF 131

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 96.2 bits (240), Expect = 2e-26
 Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 4/89 (4%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP-- 103
           +V+ LYF A WCPPC+AFTP+L E Y KLK+   + EI++VS DR E  ++ YL  MP  
Sbjct: 2   KVVLLYFWASWCPPCRAFTPELKELYEKLKKP--KVEIVYVSLDRDEEEWKKYLKKMPKD 59

Query: 104 WPAIPYASETRQSLASLYNVHGIPSLILL 132
           W  +P+  + R  L  LY V  IP+L+LL
Sbjct: 60  WLNVPFGDKERNELLRLYGVKAIPTLVLL 88

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

 Score = 62.9 bits (153), Expect = 5e-13
 Identities = 33/113 (29%), Positives = 63/113 (55%), Gaps = 11/113 (9%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGY-----QFEIIFVSSDRSESSYQSYLS 100
           +V+ L+F A   P C+ F P+L + + +L ++ Y     Q  +++VS D+SE   +S+L 
Sbjct: 26  RVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLK 85

Query: 101 GMP--WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHEL 151
            MP  W  +P+  E R+ L + ++V  +P++++L  +     DV+   A  E+
Sbjct: 86  DMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDG----DVLAANAVDEI 134

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY-QSYLSGMPWPAIP 108
           + F A WCPPC+A  P+L    ++ K+DG   E++ V+ D  + +  +++L        P
Sbjct: 24  VNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVKAFLKKYGIT-FP 80

Query: 109 YASETRQSLASLYNVHGIPSLILL 132
              +    LA  Y V G+P+  L+
Sbjct: 81  VLLDPDGELAKAYGVRGLPTTFLI 104

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 27/93 (29%)

Query: 40  SYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99
             I+S + + + F A WC PCKA  P L     +L E+  + + + V  D +        
Sbjct: 5   ELIKSAKPVVVDFWAPWCGPCKAIAPVL----EELAEEYPKVKFVKVDVDEN-------- 52

Query: 100 SGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
                            LA  Y V  IP+ +  
Sbjct: 53  ---------------PELAEEYGVRSIPTFLFF 70

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 16/86 (18%)

Query: 50  LYFSAHWCPPCKAFTPQLI---ETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA 106
           + F+   CP CK    +L+   +    LK++   F +I+V+ D S+              
Sbjct: 10  VVFTDPDCPYCKKLHKELLKDPDVQEYLKDN---FVVIYVNVDDSK----------EVTD 56

Query: 107 IPYASETRQSLASLYNVHGIPSLILL 132
               + + + LA  Y V G P+++ L
Sbjct: 57  FDGETLSEKELARKYGVRGTPTIVFL 82

Length = 105

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 26/83 (31%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPY 109
           + F A WC PCKA  P     Y KL ++ Y+ ++ F   D  E+                
Sbjct: 23  VDFYAPWCGPCKALAP----EYEKLAQE-YKDDVKFAKVDADEN---------------- 61

Query: 110 ASETRQSLASLYNVHGIPSLILL 132
                  LAS Y V G P++   
Sbjct: 62  -----PDLASEYGVRGFPTIKFF 79

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 46  QVIGLYF-SAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPW 104
           + + L+F    + P C    P L + Y + K+ G   E++ VS D  ES  + +   +  
Sbjct: 26  KWVVLFFYPKDFTPVCTTELPALADLYEEFKKLGV--EVLGVSVDSPESH-KKFAEKLGL 82

Query: 105 PAIPYASETRQSLASLYNV 123
           P  P  S+    +A  Y V
Sbjct: 83  P-FPLLSDPDGEVAKAYGV 100

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWPAI 107
           L F   WC PC+   P + E Y K KE G   EII V+ D +E + +++++  G+     
Sbjct: 66  LNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNFVNRYGL---TF 120

Query: 108 PYASETRQSLASLYNVHGIPSLILL 132
           P A +  + +   Y V  +P+  L+
Sbjct: 121 PVAIDKGRQVIDAYGVGPLPTTFLI 145

Length = 173

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 37.6 bits (86), Expect = 8e-04
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL--SGMPWPAI 107
           + F A WCPPC+A  P L E   +   D    E++ V+ D       +    +    P +
Sbjct: 37  VDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVDDENPDLAAEFGVAVRSIPTL 93

Query: 108 PYA 110
              
Sbjct: 94  LLF 96

Length = 127

>gnl|CDD|219888 pfam08534, Redoxin, Redoxin

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 52  FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
           +   +CP C A  P L +  +  K  G   +++ V++        ++ +       P  +
Sbjct: 35  WPGAFCPTCSAEHPYLEKLSKLYKAKG--VDVVAVNASNDPFFVMNFWAKEG-LKYPVLA 91

Query: 112 ETRQSLASLYNV 123
           +   +    Y +
Sbjct: 92  DRDGAFTKAYGL 103

This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 52 FSAHWCPPCKAFTPQLIETYRKLKEDG 78
          F A WC  CKA  P+  +  ++LK DG
Sbjct: 22 FYAPWCGHCKALAPEYEKLAKELKGDG 48

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 20/121 (16%)

Query: 52  FSAHWCPPCKAFTPQLIETYRKLKEDGYQ-FEIIFVSS-----DRSESSYQSYLSGMPWP 105
           F A WCP C +   +L ET +  ++  +    +I V+S     ++ +  +Q + +G+ +P
Sbjct: 63  FWASWCPLCLS---ELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYP 119

Query: 106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDV-------ITTEARHELSEDPDGE 158
            +P  ++   +LA   N+   PS  ++    G   DV       I+      L  +P+ +
Sbjct: 120 KLPVLTDNGGTLAQSLNISVYPSWAII----GKDGDVQRIVKGSISEAQALALIRNPNAD 175

Query: 159 F 159
            
Sbjct: 176 L 176

Length = 521

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.91
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.91
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.9
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.88
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.85
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.83
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.82
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.82
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.8
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.8
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.79
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.78
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.78
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.78
KOG2501|consensus	157		99.77
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.77
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.76
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.74
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.74
PTZ00056	199	glutathione peroxidase; Provisional	99.74
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.73
PLN02412	167	probable glutathione peroxidase	99.73
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.73
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.73
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.71
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.71
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.7
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.7
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.69
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.69
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.68
PTZ00256	183	glutathione peroxidase; Provisional	99.68
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.68
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.66
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.66
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.66
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.65
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.64
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.63
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.63
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.62
PRK13190	202	putative peroxiredoxin; Provisional	99.62
PRK13599	215	putative peroxiredoxin; Provisional	99.62
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.61
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.61
PRK15000	200	peroxidase; Provisional	99.61
PRK13191	215	putative peroxiredoxin; Provisional	99.6
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.59
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.58
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.57
PRK13189	222	peroxiredoxin; Provisional	99.57
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.57
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.56
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.56
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.56
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.56
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.54
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.54
KOG0910|consensus	150		99.54
PHA02278	103	thioredoxin-like protein	99.54
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.53
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.52
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.52
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.51
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.51
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.5
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.5
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.5
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.48
KOG0907|consensus	106		99.48
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.48
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.46
PRK09381	109	trxA thioredoxin; Provisional	99.46
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.45
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.45
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.44
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.44
PRK10996	139	thioredoxin 2; Provisional	99.43
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.43
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.43
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.42
PTZ00051	98	thioredoxin; Provisional	99.41
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.41
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.4
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.39
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.39
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.38
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.38
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.37
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.37
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.36
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.36
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.35
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.35
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.34
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.32
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.31
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.31
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.31
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.28
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.28
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.27
KOG0190|consensus	493		99.26
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.26
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.26
PTZ00102	477	disulphide isomerase; Provisional	99.25
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.23
PTZ00102	477	disulphide isomerase; Provisional	99.21
KOG0908|consensus	288		99.19
PLN02309	457	5'-adenylylsulfate reductase	99.14
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.14
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.12
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.07
KOG0190|consensus	493		99.06
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.05
PTZ00062	204	glutaredoxin; Provisional	99.03
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.02
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.02
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	99.0
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.0
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.95
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.94
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	98.91
KOG1731|consensus	606		98.9
KOG4277|consensus	468		98.88
PHA02125	75	thioredoxin-like protein	98.87
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.85
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.83
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.83
KOG0912|consensus	375		98.76
KOG0191|consensus	383		98.76
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.75
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.75
smart00594	122	UAS UAS domain.	98.74
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.74
KOG2792|consensus	280		98.73
PF13728	215	TraF: F plasmid transfer operon protein	98.68
KOG0855|consensus	211		98.57
KOG0191|consensus	383		98.5
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.47
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.47
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.46
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.44
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.43
KOG0852|consensus	196		98.4
KOG3425|consensus	128		98.36
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.34
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.33
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.26
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.21
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.1
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	98.08
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.05
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	97.93
PRK11200	85	grxA glutaredoxin 1; Provisional	97.9
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.89
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.86
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.84
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.79
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.76
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.68
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.67
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.6
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	97.54
KOG0911|consensus	227		97.48
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	97.47
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	97.4
KOG0914|consensus	265		97.4
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.35
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	97.31
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.31
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	97.27
KOG0854|consensus	224		97.26
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	97.23
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	97.23
KOG1651|consensus	171		97.19
PHA03050	108	glutaredoxin; Provisional	97.18
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	97.15
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	97.11
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	97.04
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.04
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	96.94
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.86
PRK10638	83	glutaredoxin 3; Provisional	96.76
PRK10329	81	glutaredoxin-like protein; Provisional	96.63
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	96.6
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	96.59
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	96.59
KOG1752|consensus	104		96.54
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	96.53
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	96.52
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	96.51
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	96.48
KOG0913|consensus	248		96.45
KOG3414|consensus	142		96.37
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.34
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	96.24
KOG2603|consensus	331		96.08
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	96.05
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	95.79
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.75
COG1331	667	Highly conserved protein containing a thioredoxin	95.29
PRK10824	115	glutaredoxin-4; Provisional	95.27
PTZ00062	204	glutaredoxin; Provisional	95.17
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	94.94
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	94.9
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	94.86
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	94.14
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	94.06
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	93.73
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	93.44
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	93.09
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	92.41
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	92.33
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	92.28
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	92.04
KOG1672|consensus	211		91.93
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	91.69
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	91.33
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	90.05
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	89.63
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	87.94
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	87.78
PRK12559	131	transcriptional regulator Spx; Provisional	87.61
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	86.68
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	86.68
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	86.23
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	85.75
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	83.49
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	83.38
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	83.06
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	83.04
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	82.33
TIGR03759	200	conj_TIGR03759 integrating conjugative element pro	81.77
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	80.61
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	80.17

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.91  E-value=1.8e-24  Score=156.37  Aligned_cols=109  Identities=29%  Similarity=0.669  Sum_probs=94.3

Q ss_pred             eeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhc-----CCcEEEEEeeCCCCHHHHHHHHhCCC--CCcccCCch
Q psy8729          40 SYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKED-----GYQFEIIFVSSDRSESSYQSYLSGMP--WPAIPYASE  112 (190)
Q Consensus        40 ~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-----g~~~~ii~i~~d~~~~~~~~~~~~~~--~~~~~~~~~  112 (190)
                      +.+ ++++++|+|||+||++|+.++|.|+++++++.++     +.++.+++|+.|.+.+.++.|+++++  |..+|+..+
T Consensus        21 s~~-kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~   99 (146)
T cd03008          21 ARL-ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDE   99 (146)
T ss_pred             HHh-CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccch
Confidence            344 7999999999999999999999999999988763     23699999999998888999999997  666777766


Q ss_pred             hHHHHHHHcCCCCCCeeeeeeecCCCceEEEcccccccccc
Q psy8729         113 TRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSE  153 (190)
Q Consensus       113 ~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~~~~~~~~  153 (190)
                      ....+.++|++.++|++++  ||++|  +++..+++....+
T Consensus       100 ~~~~l~~~y~v~~iPt~vl--Id~~G--~Vv~~~~~~~i~~  136 (146)
T cd03008         100 FRRELEAQFSVEELPTVVV--LKPDG--DVLAANAVDEILR  136 (146)
T ss_pred             HHHHHHHHcCCCCCCEEEE--ECCCC--cEEeeChHHHHHH
Confidence            6678999999999999999  99999  8888888765543

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.91  E-value=1.6e-23  Score=149.92  Aligned_cols=127  Identities=51%  Similarity=1.023  Sum_probs=106.7

Q ss_pred             cCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC-CCCccc
Q psy8729          30 AEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM-PWPAIP  108 (190)
Q Consensus        30 ~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~-~~~~~~  108 (190)
                      .|++ +...++.+ +||+++|+||++||++|+.++|.|+++++++++++.++.+++|++|.+.+++++|++++ .|..++
T Consensus         4 ~~~~-~~v~l~~~-~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~   81 (132)
T cd02964           4 LDGE-GVVPVSAL-EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP   81 (132)
T ss_pred             ccCC-ccccHHHh-CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence            3444 34444454 78999999999999999999999999999998654469999999999999999999999 466666


Q ss_pred             CCc-hhHHHHHHHcCCCCCCeeeeeeecCCCceEEEccccccccccCCCCCcCCC
Q psy8729         109 YAS-ETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW  162 (190)
Q Consensus       109 ~~~-~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~~~~~~~~~~~~~~~~~  162 (190)
                      +.. .....+.+.|++.++|++++  ||++|  +++...+...+..++....|||
T Consensus        82 ~~d~~~~~~~~~~~~v~~iPt~~l--id~~G--~iv~~~~~~~~~~~~~~~~~~~  132 (132)
T cd02964          82 FEDEELRELLEKQFKVEGIPTLVV--LKPDG--DVVTTNARDEVEEDPGACAFPW  132 (132)
T ss_pred             cCcHHHHHHHHHHcCCCCCCEEEE--ECCCC--CEEchhHHHHHHhCcccccCCC
Confidence            544 23567888899999999999  99999  8899999888888999998887

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.90  E-value=2.4e-23  Score=148.63  Aligned_cols=126  Identities=46%  Similarity=0.928  Sum_probs=105.6

Q ss_pred             CCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCC
Q psy8729          31 EGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYA  110 (190)
Q Consensus        31 ~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~  110 (190)
                      +.+|....++.+ ++++++|+||++||++|+.++|.++++++++.+.+.++.+++|++|.+.+++++++++++|..+++.
T Consensus         5 ~~~G~~v~l~~~-~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~   83 (131)
T cd03009           5 RNDGGKVPVSSL-EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFS   83 (131)
T ss_pred             ccCCCCccHHHh-CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccC
Confidence            444555555555 7899999999999999999999999999999876557999999999999999999999988777765


Q ss_pred             c-hhHHHHHHHcCCCCCCeeeeeeecCCCceEEEccccccccccCCCCCcCCC
Q psy8729         111 S-ETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW  162 (190)
Q Consensus       111 ~-~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~~~~~~~~~~~~~~~~~  162 (190)
                      . +....+.+.|++.++|++++  ||++|  +++...+.+.... ++...|||
T Consensus        84 ~~~~~~~~~~~~~v~~~P~~~l--id~~G--~i~~~~~~~~~~~-~~~~~~~~  131 (131)
T cd03009          84 DRERRSRLNRTFKIEGIPTLII--LDADG--EVVTTDARELVLE-YGADAFPF  131 (131)
T ss_pred             CHHHHHHHHHHcCCCCCCEEEE--ECCCC--CEEcccHHHHHhh-cccccCCC
Confidence            4 45678999999999999999  99999  7888887665554 88777776

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.88  E-value=8e-22  Score=133.06  Aligned_cols=91  Identities=37%  Similarity=0.827  Sum_probs=82.3

Q ss_pred             CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC--CCCcccCCchhHHHHHHHcC
Q psy8729          45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM--PWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  122 (190)
                      ||+++|+||++||++|+.++|.|.++++++++ +.++++++|+.|.+.++++++++++  +|..+++..+....+.+.|+
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   79 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG   79 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence            68999999999999999999999999999995 3579999999999999999999988  67888888888899999999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      +.++|++++  +|++|
T Consensus        80 i~~iP~~~l--ld~~G   93 (95)
T PF13905_consen   80 INGIPTLVL--LDPDG   93 (95)
T ss_dssp             -TSSSEEEE--EETTS
T ss_pred             CCcCCEEEE--ECCCC
Confidence            999999999  99999

...

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.85  E-value=1.3e-20  Score=131.16  Aligned_cols=111  Identities=21%  Similarity=0.354  Sum_probs=88.8

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCC
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPW  104 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~  104 (190)
                      |+|.+.+.+|+...+....++++++|+||++||++|+.++|.++++++++.+   ++.++.++ +.+.++++.+++++++
T Consensus         1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~-~~~~~~~~~~~~~~~~   76 (114)
T cd02967           1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLAS-DGEKAEHQRFLKKHGL   76 (114)
T ss_pred             CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEe-CCCHHHHHHHHHHhCC
Confidence            3566666666666666553489999999999999999999999999888754   37777775 6678899999999987


Q ss_pred             CcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEcc
Q psy8729         105 PAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITT  145 (190)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~  145 (190)
                      ..+|...  +..+.+.|++.++|++++  ||++|  ++++.
T Consensus        77 ~~~p~~~--~~~~~~~~~~~~~P~~~v--id~~G--~v~~~  111 (114)
T cd02967          77 EAFPYVL--SAELGMAYQVSKLPYAVL--LDEAG--VIAAK  111 (114)
T ss_pred             CCCcEEe--cHHHHhhcCCCCcCeEEE--ECCCC--eEEec
Confidence            6666655  346889999999999999  99999  66654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.83  E-value=4.7e-20  Score=130.86  Aligned_cols=110  Identities=17%  Similarity=0.246  Sum_probs=89.7

Q ss_pred             cccceeccCCCc--cceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729          23 KTYNIGLAEGTV--TTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS  100 (190)
Q Consensus        23 ~~~~~~l~~~~~--~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~  100 (190)
                      ..|+|++++.++  .....+.+ ++++++|+||++||++|+.++|.++++++++     ++++++|+.+++.+.+++|++
T Consensus         2 ~~p~f~~~~~~g~~~~~~~~~~-~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~~~~~~~~   75 (127)
T cd03010           2 PAPAFSLPALPGPDKTLTSADL-KGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPENALAWLA   75 (127)
T ss_pred             CCCCcccccccCCCccccHHHc-CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHHHHHHHHH
Confidence            356777776665  33333343 6899999999999999999999999987764     388999999888999999999


Q ss_pred             CCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         101 GMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      +++....++..|....+.+.|++.++|++++  +|++|++
T Consensus        76 ~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~--ld~~G~v  113 (127)
T cd03010          76 RHGNPYAAVGFDPDGRVGIDLGVYGVPETFL--IDGDGII  113 (127)
T ss_pred             hcCCCCceEEECCcchHHHhcCCCCCCeEEE--ECCCceE
Confidence            8876544555677788999999999999999  9999944

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.82  E-value=7.8e-20  Score=132.68  Aligned_cols=116  Identities=27%  Similarity=0.434  Sum_probs=95.5

Q ss_pred             CCcccceeccC--CCccceeeeeccCCcEEEEEEEcC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          21 AKKTYNIGLAE--GTVTTKVLSYIESCQVIGLYFSAH-WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        21 ~~~~~~~~l~~--~~~~~~~~~~~~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      +...|++++.+  .+++...++.+ +||+++|.||++ |||+|+..+|.+.++++.+++.  ++.+++|+.+.+.. +++
T Consensus         3 G~~~P~~~~~~~~~~g~~~~l~~~-~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~--~v~~v~v~~~~~~~-~~~   78 (146)
T PF08534_consen    3 GDKAPDFSLKDLDLDGKPVSLSDF-KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK--GVDVVGVSSDDDPP-VRE   78 (146)
T ss_dssp             TSB--CCEEEEEETTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSSHH-HHH
T ss_pred             CCCCCCeEEEeecCCCCEecHHHh-CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC--ceEEEEecccCCHH-HHH
Confidence            44567777744  77777777775 899999999999 9999999999999999998876  48889999887776 889


Q ss_pred             HHhCCCCCcccCCchhHHHHHHHcCCC---------CCCeeeeeeecCCCceEEE
Q psy8729          98 YLSGMPWPAIPYASETRQSLASLYNVH---------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~P~~~l~~id~~g~~~i~  143 (190)
                      |+++++. .+++..|.+..+.+.|++.         ++|++++  ||++|+++..
T Consensus        79 ~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~l--Id~~G~V~~~  130 (146)
T PF08534_consen   79 FLKKYGI-NFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFL--IDKDGKVVYR  130 (146)
T ss_dssp             HHHHTTT-TSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEE--EETTSBEEEE
T ss_pred             HHHhhCC-CceEEechHHHHHHHhCCccccccccCCeecEEEE--EECCCEEEEE
Confidence            9988663 5777888889999999988         9999999  9999954333

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.82  E-value=5.9e-20  Score=138.68  Aligned_cols=114  Identities=17%  Similarity=0.197  Sum_probs=88.9

Q ss_pred             CCcccceeccCCCc--cceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          21 AKKTYNIGLAEGTV--TTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        21 ~~~~~~~~l~~~~~--~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      +...|+|++.+.++  ....++...++++++|+||++||++|+.++|.|+++++    +  ++++++|+.+++.+.+++|
T Consensus        42 g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~--~~~vi~v~~~~~~~~~~~~  115 (185)
T PRK15412         42 GKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q--GIRVVGMNYKDDRQKAISW  115 (185)
T ss_pred             CCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c--CCEEEEEECCCCHHHHHHH
Confidence            34567888877653  33333333379999999999999999999999988754    2  3789999998888889999


Q ss_pred             HhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEE
Q psy8729          99 LSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDV  142 (190)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i  142 (190)
                      +++++.....+..|....+.+.||+.++|++++  ||++|++..
T Consensus       116 ~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~v--id~~G~i~~  157 (185)
T PRK15412        116 LKELGNPYALSLFDGDGMLGLDLGVYGAPETFL--IDGNGIIRY  157 (185)
T ss_pred             HHHcCCCCceEEEcCCccHHHhcCCCcCCeEEE--ECCCceEEE
Confidence            998875433345566778889999999999999  999995433

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.80  E-value=3.7e-19  Score=126.22  Aligned_cols=98  Identities=23%  Similarity=0.293  Sum_probs=85.0

Q ss_pred             eeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-----CCHHHHHHHHhCCCCCcccCCc
Q psy8729          37 KVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-----RSESSYQSYLSGMPWPAIPYAS  111 (190)
Q Consensus        37 ~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-----~~~~~~~~~~~~~~~~~~~~~~  111 (190)
                      ..++.+ ++++++|+||++||++|+..+|.|++++++++++  ++.+++|+.+     .+.+.+++|++++++ .+|+..
T Consensus        16 v~l~~~-~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~   91 (126)
T cd03012          16 LSLAQL-RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYGI-TYPVAN   91 (126)
T ss_pred             cCHHHh-CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcCC-CCCEEE
Confidence            333444 7899999999999999999999999999999875  5999999763     467889999999986 578888


Q ss_pred             hhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         112 ETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       112 ~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      |....+.+.|++.++|++++  ||++|++
T Consensus        92 D~~~~~~~~~~v~~~P~~~v--id~~G~v  118 (126)
T cd03012          92 DNDYATWRAYGNQYWPALYL--IDPTGNV  118 (126)
T ss_pred             CCchHHHHHhCCCcCCeEEE--ECCCCcE
Confidence            88899999999999999999  9999954

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.80  E-value=5.4e-19  Score=150.49  Aligned_cols=115  Identities=19%  Similarity=0.345  Sum_probs=97.7

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-----CCHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-----RSES   93 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-----~~~~   93 (190)
                      ..+...|+|.+.+.++....++   +++++||+|||+||++|+.++|.|++++++++..  ++.+++|+.+     .+.+
T Consensus        33 ~~~~~lP~f~l~D~dG~~v~ls---kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~  107 (521)
T PRK14018         33 TVPHTLSTLKTADNRPASVYLK---KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDG  107 (521)
T ss_pred             cccCCCCCeEeecCCCceeecc---CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHH
Confidence            3344689999999988766654   7999999999999999999999999999998754  4889998863     3456


Q ss_pred             HHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          94 SYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      .+++|++..++..+++..|.+..+.+.|++.++|++++  ||++|++
T Consensus       108 ~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~I--IDkdGkI  152 (521)
T PRK14018        108 DFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAI--IGKDGDV  152 (521)
T ss_pred             HHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEE--EcCCCeE
Confidence            78888888887778888888899999999999999999  9999954

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.79  E-value=5.5e-19  Score=132.04  Aligned_cols=111  Identities=23%  Similarity=0.290  Sum_probs=88.4

Q ss_pred             CcccceeccCCCccce-e-eeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729          22 KKTYNIGLAEGTVTTK-V-LSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        22 ~~~~~~~l~~~~~~~~-~-~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      ...|+|++.+.++... + ++...++++++|+||++||++|+.+.|.+++++++      ++++++|+.+++.++.++|+
T Consensus        38 ~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~  111 (173)
T TIGR00385        38 KPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFL  111 (173)
T ss_pred             CCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHH
Confidence            4678888887666422 2 23434789999999999999999999999877542      38899999887788888999


Q ss_pred             hCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         100 SGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      +++++...++..|....+.+.|++.++|++++  ||++|++
T Consensus       112 ~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~--id~~G~i  150 (173)
T TIGR00385       112 KELGNPYQAILIDPNGKLGLDLGVYGAPETFL--VDGNGVI  150 (173)
T ss_pred             HHcCCCCceEEECCCCchHHhcCCeeCCeEEE--EcCCceE
Confidence            98876433345677788999999999999999  9999944

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.78  E-value=1.9e-18  Score=128.83  Aligned_cols=119  Identities=17%  Similarity=0.316  Sum_probs=101.0

Q ss_pred             CcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-------CHHH
Q psy8729          22 KKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-------SESS   94 (190)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-------~~~~   94 (190)
                      ...|+|.+.+.++....++.+.+++++||+||++|||.|...++.|.++++++.+.  ++.+++|+.|.       +.+.
T Consensus         2 ~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~   79 (171)
T cd02969           2 SPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPEN   79 (171)
T ss_pred             CcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHH
Confidence            34677888888777666666557899999999999999999999999999999865  59999999875       5789


Q ss_pred             HHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEcccc
Q psy8729          95 YQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEA  147 (190)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~~  147 (190)
                      +++|++++++. +++..|.+..+.+.|++..+|++++  +|++|  +++....
T Consensus        80 ~~~~~~~~~~~-~~~l~D~~~~~~~~~~v~~~P~~~l--id~~G--~v~~~~~  127 (171)
T cd02969          80 MKAKAKEHGYP-FPYLLDETQEVAKAYGAACTPDFFL--FDPDG--KLVYRGR  127 (171)
T ss_pred             HHHHHHHCCCC-ceEEECCchHHHHHcCCCcCCcEEE--ECCCC--eEEEeec
Confidence            99999988864 7788888889999999999999999  99999  6665443

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.78  E-value=3.4e-18  Score=127.33  Aligned_cols=115  Identities=25%  Similarity=0.427  Sum_probs=98.5

Q ss_pred             CCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      .+...|++++.+.+++...++.+ ++++++|.||++||++|+...+.++++++++.+.  ++.+++|+.|.+.++++.|+
T Consensus        37 ~g~~~p~~~~~~~~g~~~~l~~~-~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~  113 (173)
T PRK03147         37 VGKEAPNFVLTDLEGKKIELKDL-KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFV  113 (173)
T ss_pred             CCCCCCCcEeecCCCCEEeHHHc-CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHH
Confidence            34566788888877766555554 7899999999999999999999999999999875  48999999999999999999


Q ss_pred             hCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         100 SGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      ++++. .+++..|.+..+.+.|++..+|++++  +|++|++
T Consensus       114 ~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~g~i  151 (173)
T PRK03147        114 NRYGL-TFPVAIDKGRQVIDAYGVGPLPTTFL--IDKDGKV  151 (173)
T ss_pred             HHhCC-CceEEECCcchHHHHcCCCCcCeEEE--ECCCCcE
Confidence            98875 56666777889999999999999999  9999944

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.78  E-value=1.9e-18  Score=121.68  Aligned_cols=113  Identities=26%  Similarity=0.529  Sum_probs=99.8

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAH-WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      +.+.|+|.+++.++....++.+ .+++++|.||++ ||++|+..++.|++++++++..  ++.+++|+.| +.++.+.+.
T Consensus         2 G~~~P~f~l~~~~g~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~--~~~vi~is~d-~~~~~~~~~   77 (124)
T PF00578_consen    2 GDKAPDFTLTDSDGKTVSLSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK--GVQVIGISTD-DPEEIKQFL   77 (124)
T ss_dssp             TSBGGCEEEETTTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESS-SHHHHHHHH
T ss_pred             cCCCCCcEeECCCCCEEEHHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccc--eEEeeecccc-cccchhhhh
Confidence            5678999999988888888887 889999999999 9999999999999999999876  5999999996 555888888


Q ss_pred             hCCCCCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCce
Q psy8729         100 SGMPWPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRL  140 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~  140 (190)
                      ++++ ..+++..|....+.+.|++.      .+|++++  ||++|++
T Consensus        78 ~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~l--id~~g~I  121 (124)
T PF00578_consen   78 EEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFL--IDPDGKI  121 (124)
T ss_dssp             HHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEE--EETTSBE
T ss_pred             hhhc-cccccccCcchHHHHHcCCccccCCceEeEEEE--ECCCCEE
Confidence            8777 47788888889999999998      9999999  9999944

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>KOG2501|consensus

Probab=99.77  E-value=1.2e-18  Score=125.35  Aligned_cols=105  Identities=46%  Similarity=0.924  Sum_probs=98.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhC--CCCCcccCCchhHHHHHHHc
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG--MPWPAIPYASETRQSLASLY  121 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  121 (190)
                      .||++.++|.|.|||+|+.+.|.|.++|++..+.+..+.|++||.|.+.++...|+.+  ..|..+|+..+..+++.++|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            7999999999999999999999999999999998888999999999999999999996  45999999999999999999


Q ss_pred             CCCCCCeeeeeeecCCCceEEEccccccccc
Q psy8729         122 NVHGIPSLILLAVEAGGRLDVITTEARHELS  152 (190)
Q Consensus       122 ~v~~~P~~~l~~id~~g~~~i~~~~~~~~~~  152 (190)
                      ++.++|++.+  ++++|  ..+...++....
T Consensus       112 ~v~~iP~l~i--~~~dG--~~v~~d~r~~v~  138 (157)
T KOG2501|consen  112 EVKGIPALVI--LKPDG--TVVTEDARLLVQ  138 (157)
T ss_pred             ccCcCceeEE--ecCCC--CEehHhhHHHHH
Confidence            9999999999  99999  888888876554

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.77  E-value=9.5e-18  Score=127.05  Aligned_cols=114  Identities=16%  Similarity=0.264  Sum_probs=89.0

Q ss_pred             CCCcccceeccCCCccceeee-eccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLS-YIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~-~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      .+...|+|++.+.+|....+. ...++++++|+||++|||+|+.++|.++++++++     ++.+++|+. ++.+++++|
T Consensus        48 vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-----~~~vv~Is~-~~~~~~~~~  121 (189)
T TIGR02661        48 VGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-----ETDVVMISD-GTPAEHRRF  121 (189)
T ss_pred             CCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-----CCcEEEEeC-CCHHHHHHH
Confidence            455678999998887665553 2237899999999999999999999999987653     255788884 477889999


Q ss_pred             HhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEcc
Q psy8729          99 LSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITT  145 (190)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~  145 (190)
                      +++++....++.  ....+.+.|++..+|+.++  ||++|  +++..
T Consensus       122 ~~~~~~~~~~~~--~~~~i~~~y~v~~~P~~~l--ID~~G--~I~~~  162 (189)
T TIGR02661       122 LKDHELGGERYV--VSAEIGMAFQVGKIPYGVL--LDQDG--KIRAK  162 (189)
T ss_pred             HHhcCCCcceee--chhHHHHhccCCccceEEE--ECCCC--eEEEc
Confidence            998876433332  3568889999999999999  99999  55553

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.76  E-value=2.6e-18  Score=125.78  Aligned_cols=111  Identities=16%  Similarity=0.212  Sum_probs=84.4

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHHHHH
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSESSYQ   96 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~~~~   96 (190)
                      .++|++.+.++....++.+ +||+++|.||++||+ |+.++|.|++++++|.+.  ++.+++|+.+       ++.+.++
T Consensus         2 ~~~f~l~d~~G~~v~l~~~-~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~   77 (152)
T cd00340           2 IYDFSVKDIDGEPVSLSKY-KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCNQFGGQEPGSNEEIK   77 (152)
T ss_pred             cceeEEECCCCCEEeHHHh-CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccCccccCCCCCHHHHH
Confidence            3667788877777776766 689999999999999 999999999999999876  4999999875       3457899


Q ss_pred             HHHhC-CCCCcccCCchh--HHH-HHHHcC--CCCCC-----------eeeeeeecCCCceE
Q psy8729          97 SYLSG-MPWPAIPYASET--RQS-LASLYN--VHGIP-----------SLILLAVEAGGRLD  141 (190)
Q Consensus        97 ~~~~~-~~~~~~~~~~~~--~~~-~~~~~~--v~~~P-----------~~~l~~id~~g~~~  141 (190)
                      .|+++ +++ .+|+..|.  +.. ....|+  +.++|           ++++  ||++|++.
T Consensus        78 ~f~~~~~~~-~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttfl--Id~~G~i~  136 (152)
T cd00340          78 EFCETNYGV-TFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFL--VDRDGEVV  136 (152)
T ss_pred             HHHHHhcCC-CceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEE--ECCCCcEE
Confidence            99986 664 46666432  222 344455  35666           7899  99999553

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.74  E-value=2.6e-17  Score=113.23  Aligned_cols=108  Identities=27%  Similarity=0.507  Sum_probs=89.9

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCC-HHHHHHHHhCCCCC
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRS-ESSYQSYLSGMPWP  105 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~-~~~~~~~~~~~~~~  105 (190)
                      +.+.+.+++...+..+ .+++++|+||++||++|+...+.|.++.+++.+  .++.+++|+.|.+ .++++.++++++ .
T Consensus         2 ~~~~~~~g~~~~~~~~-~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~d~~~~~~~~~~~~~~~-~   77 (116)
T cd02966           2 FSLPDLDGKPVSLSDL-KGKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNVDDDDPAAVKAFLKKYG-I   77 (116)
T ss_pred             ccccCCCCCEeehHHc-CCCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHHHHHcC-C
Confidence            3444555555555554 589999999999999999999999999999874  3699999999987 999999999988 4


Q ss_pred             cccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      .+++..+....+.+.|++.++|++++  +|++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~P~~~l--~d~~g~v  110 (116)
T cd02966          78 TFPVLLDPDGELAKAYGVRGLPTTFL--IDRDGRI  110 (116)
T ss_pred             CcceEEcCcchHHHhcCcCccceEEE--ECCCCcE
Confidence            66666777789999999999999999  9999943

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.74  E-value=2.6e-17  Score=122.33  Aligned_cols=114  Identities=11%  Similarity=0.132  Sum_probs=95.1

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCC-ChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHW-CPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      ..+...|+|.+.+.++....++.+ +|++++|.||++| |++|+.+++.|+++++++.    ++++++|+.| +....++
T Consensus        19 ~~G~~~P~f~l~~~~g~~v~l~~~-~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D-~~~~~~~   92 (167)
T PRK00522         19 QVGDKAPDFTLVANDLSDVSLADF-AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISAD-LPFAQKR   92 (167)
T ss_pred             CCCCCCCCeEEEcCCCcEEehHHh-CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCC-CHHHHHH
Confidence            345677899988887776666666 7899999999999 9999999999999988872    4899999987 4567899


Q ss_pred             HHhCCCCCcccCCchh-HHHHHHHcCCCCCC---------eeeeeeecCCCce
Q psy8729          98 YLSGMPWPAIPYASET-RQSLASLYNVHGIP---------SLILLAVEAGGRL  140 (190)
Q Consensus        98 ~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~P---------~~~l~~id~~g~~  140 (190)
                      |.++++...+++..|. ...+++.||+...|         ++++  ||++|++
T Consensus        93 f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfv--Id~~G~I  143 (167)
T PRK00522         93 FCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFV--LDENNKV  143 (167)
T ss_pred             HHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEE--ECCCCeE
Confidence            9999987667888884 56999999998777         9999  9999944

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.74  E-value=1.7e-17  Score=126.51  Aligned_cols=114  Identities=17%  Similarity=0.168  Sum_probs=86.1

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSES   93 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~   93 (190)
                      ....|+|++.+.+|....++.+ +|+++||.||++||++|+.++|.|++++++|.++|  +++++|+++       ++.+
T Consensus        16 ~~~~pdf~l~d~~G~~vsL~~~-kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~e   92 (199)
T PTZ00056         16 RKSIYDYTVKTLEGTTVPMSSL-KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNTK   92 (199)
T ss_pred             CCCCCceEEECCCCCEEeHHHh-CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCHH
Confidence            4467889998888877777776 68999999999999999999999999999998764  999999874       4568


Q ss_pred             HHHHHHhCCCCCcccCCch------hHHH--------HHHHcCCC----CC---CeeeeeeecCCCce
Q psy8729          94 SYQSYLSGMPWPAIPYASE------TRQS--------LASLYNVH----GI---PSLILLAVEAGGRL  140 (190)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~------~~~~--------~~~~~~v~----~~---P~~~l~~id~~g~~  140 (190)
                      ++++|+++++. .+|+..+      ....        +...|+..    .+   |+.++  ||++|++
T Consensus        93 ~~~~f~~~~~~-~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tfl--ID~~G~i  157 (199)
T PTZ00056         93 DIRKFNDKNKI-KYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFL--VNKSGNV  157 (199)
T ss_pred             HHHHHHHHcCC-CceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEE--ECCCCcE
Confidence            89999998875 4555422      1111        22234332    23   37899  9999954

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.73  E-value=2.7e-17  Score=118.29  Aligned_cols=114  Identities=25%  Similarity=0.308  Sum_probs=96.6

Q ss_pred             cccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhC
Q psy8729          23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG  101 (190)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~  101 (190)
                      ..|+|.+.+.++....++.+ ++++++|.|| ++|||.|...++.|+++++++.+.  ++.+++|+.| +.+.+++|.++
T Consensus         2 ~~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d-~~~~~~~~~~~   77 (140)
T cd03017           2 KAPDFTLPDQDGETVSLSDL-RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL--GAVVIGVSPD-SVESHAKFAEK   77 (140)
T ss_pred             CCCCccccCCCCCEEeHHHh-CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCC-CHHHHHHHHHH
Confidence            46778888888777777776 5899999999 689999999999999999999875  4899999987 56789999998


Q ss_pred             CCCCcccCCchhHHHHHHHcCCCCC---------CeeeeeeecCCCceEEE
Q psy8729         102 MPWPAIPYASETRQSLASLYNVHGI---------PSLILLAVEAGGRLDVI  143 (190)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~v~~~---------P~~~l~~id~~g~~~i~  143 (190)
                      ++. .+++..|.+..+.+.||+...         |++++  ||++|+++..
T Consensus        78 ~~~-~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~l--id~~G~v~~~  125 (140)
T cd03017          78 YGL-PFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFL--IDPDGKIVKV  125 (140)
T ss_pred             hCC-CceEEECCccHHHHHhCCccccccccCCcceeEEE--ECCCCEEEEE
Confidence            875 577888888899999999988         99999  9999954333

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PLN02412 probable glutathione peroxidase

Probab=99.73  E-value=1.7e-17  Score=123.25  Aligned_cols=114  Identities=21%  Similarity=0.255  Sum_probs=85.3

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSES   93 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~   93 (190)
                      ....|+|++.+.++....++.+ +++++||.||++||++|+.++|.|++++++|++.|  +.+++|+.+       ++.+
T Consensus         6 ~~~~pdf~l~d~~G~~v~l~~~-~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~~~~   82 (167)
T PLN02412          6 PKSIYDFTVKDIGGNDVSLNQY-KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPGSNE   82 (167)
T ss_pred             CCCCCceEEECCCCCEEeHHHh-CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCCCHH
Confidence            3567889998888876666666 78999999999999999999999999999999874  999999975       2445


Q ss_pred             HHHHH-HhCCCCCcccCCch--hH-HHHHHHcC-------------CCCCCeeeeeeecCCCce
Q psy8729          94 SYQSY-LSGMPWPAIPYASE--TR-QSLASLYN-------------VHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        94 ~~~~~-~~~~~~~~~~~~~~--~~-~~~~~~~~-------------v~~~P~~~l~~id~~g~~  140 (190)
                      +++++ .++++. .+|+..+  .+ ......|+             +.+.|+.|+  ||++|++
T Consensus        83 ~~~~~~~~~~~~-~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tfl--Id~~G~v  143 (167)
T PLN02412         83 EIQQTVCTRFKA-EFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFL--VSKEGKV  143 (167)
T ss_pred             HHHHHHHHccCC-CCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEE--ECCCCcE
Confidence            55554 577664 4666542  12 12222222             566899999  9999954

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.73  E-value=4e-17  Score=118.07  Aligned_cols=113  Identities=15%  Similarity=0.202  Sum_probs=93.8

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCC-ChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHW-CPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      +...|+|.+.+.++....++.+ .||++||.||++| |++|+..++.|+++++++.    ++.+++|+.|. .+..+.|.
T Consensus         3 G~~aP~f~l~~~~g~~~~l~~~-~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~-~~~~~~~~   76 (143)
T cd03014           3 GDKAPDFTLVTSDLSEVSLADF-AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADL-PFAQKRWC   76 (143)
T ss_pred             CCCCCCcEEECCCCcEEeHHHh-CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCC-HHHHHHHH
Confidence            3457788888887776666666 6899999999998 6999999999999999873    48899999885 66789999


Q ss_pred             hCCCCCcccCCchhH-HHHHHHcCCCC------CCeeeeeeecCCCceE
Q psy8729         100 SGMPWPAIPYASETR-QSLASLYNVHG------IPSLILLAVEAGGRLD  141 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~-~~~~~~~~v~~------~P~~~l~~id~~g~~~  141 (190)
                      ++++...+++..|.. ..+.++||+..      .|++++  ||++|+++
T Consensus        77 ~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~i--id~~G~I~  123 (143)
T cd03014          77 GAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFV--IDENGKVI  123 (143)
T ss_pred             HhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEE--EcCCCeEE
Confidence            988866788888875 89999999863      699999  99999543

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.73  E-value=4e-17  Score=126.85  Aligned_cols=115  Identities=18%  Similarity=0.220  Sum_probs=86.7

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSES   93 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~   93 (190)
                      +...|+|++.+.+|....++.+ +|+++||.||++||++|+.++|.|++++++|.++|  +++++|+++       ++.+
T Consensus        76 g~~aPdF~l~d~~G~~vsLsd~-kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s~~  152 (236)
T PLN02399         76 EKSVHDFTVKDIDGKDVALSKF-KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNP  152 (236)
T ss_pred             CCCCCceEEECCCCCEEeHHHh-CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCCHH
Confidence            4567899999888877776666 68999999999999999999999999999998764  999999974       3567


Q ss_pred             HHHHHH-hCCCCCcccCCc--hhHH-HHHHH-------cC------CCCCCeeeeeeecCCCceE
Q psy8729          94 SYQSYL-SGMPWPAIPYAS--ETRQ-SLASL-------YN------VHGIPSLILLAVEAGGRLD  141 (190)
Q Consensus        94 ~~~~~~-~~~~~~~~~~~~--~~~~-~~~~~-------~~------v~~~P~~~l~~id~~g~~~  141 (190)
                      ++++|+ ++++. .+|+..  |.+. .....       ++      +...|+.++  ||++|++.
T Consensus       153 ei~~f~~~~~g~-~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfL--IDk~GkVv  214 (236)
T PLN02399        153 EIKQFACTRFKA-EFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFL--VDKNGKVV  214 (236)
T ss_pred             HHHHHHHHhcCC-CCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEE--ECCCCcEE
Confidence            889998 46654 455553  2211 22222       22      345799999  99999553

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.71  E-value=5.2e-17  Score=114.36  Aligned_cols=103  Identities=17%  Similarity=0.386  Sum_probs=83.4

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-CHHHHHHHHhCCC
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-SESSYQSYLSGMP  103 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-~~~~~~~~~~~~~  103 (190)
                      |.|.+.+.++........ ++++++|+||++||++|+..+|.|++++++       +.+++|+.+. +.+.++.|+++++
T Consensus         1 p~f~l~~~~g~~~~~~~~-~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~   72 (123)
T cd03011           1 PLFTATTLDGEQFDLESL-SGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG   72 (123)
T ss_pred             CCceeecCCCCEeeHHHh-CCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC
Confidence            345666666544444443 679999999999999999999999988776       3467787775 4788999999888


Q ss_pred             CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                      . .+++..|.+..+++.|++.++|++++  +|++|
T Consensus        73 ~-~~~~~~d~~~~~~~~~~i~~~P~~~v--id~~g  104 (123)
T cd03011          73 Y-GFPVINDPDGVISARWGVSVTPAIVI--VDPGG  104 (123)
T ss_pred             C-CccEEECCCcHHHHhCCCCcccEEEE--EcCCC
Confidence            4 57777777789999999999999999  99988

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.71  E-value=8.3e-17  Score=116.00  Aligned_cols=115  Identities=22%  Similarity=0.372  Sum_probs=90.0

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEEcCCChh-hhhhhHHHHHHHHHHhhcC-CcEEEEEeeCCC---CHHHHHHH
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPP-CKAFTPQLIETYRKLKEDG-YQFEIIFVSSDR---SESSYQSY   98 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~g-~~~~ii~i~~d~---~~~~~~~~   98 (190)
                      .|+|++.+.++....+..+ .+++++|.||++||++ |...++.|+++++++.+.+ .++++++|+.|.   +.+.+++|
T Consensus         2 ~p~f~l~~~~g~~~~l~~~-~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~   80 (142)
T cd02968           2 GPDFTLTDQDGRPVTLSDL-KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY   80 (142)
T ss_pred             CCceEEEcCCCCEEchHHh-CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence            4678888777766666665 7899999999999997 9999999999999998753 369999999874   46789999


Q ss_pred             HhCCCCCcccCCchh---HHHHHHHcCCCCC--------------CeeeeeeecCCCceEE
Q psy8729          99 LSGMPWPAIPYASET---RQSLASLYNVHGI--------------PSLILLAVEAGGRLDV  142 (190)
Q Consensus        99 ~~~~~~~~~~~~~~~---~~~~~~~~~v~~~--------------P~~~l~~id~~g~~~i  142 (190)
                      +++++ ..+++..+.   ...+.+.||+...              |.+++  ||++|++..
T Consensus        81 ~~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l--id~~G~i~~  138 (142)
T cd02968          81 AKAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYL--VDPDGKLVR  138 (142)
T ss_pred             HHHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEE--ECCCCCEEE
Confidence            99886 244444433   4788999997543              46899  999995543

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.70  E-value=1.6e-16  Score=116.38  Aligned_cols=116  Identities=16%  Similarity=0.263  Sum_probs=94.8

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAH-WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      +...|+|.+.+.++....++.+ +++++||.||++ ||+.|...++.|+++++++.+.  ++++++|+.| +.+.+++|.
T Consensus         7 g~~~p~f~l~~~~G~~~~l~~~-~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~--~v~vi~Is~d-~~~~~~~~~   82 (154)
T PRK09437          7 GDIAPKFSLPDQDGEQVSLTDF-QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA--GVVVLGISTD-KPEKLSRFA   82 (154)
T ss_pred             CCcCCCcEeeCCCCCEEeHHHh-CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCC-CHHHHHHHH
Confidence            4567888888887776666666 788999999976 6888999999999999999876  4899999988 568899999


Q ss_pred             hCCCCCcccCCchhHHHHHHHcCCCCC------------CeeeeeeecCCCceEEE
Q psy8729         100 SGMPWPAIPYASETRQSLASLYNVHGI------------PSLILLAVEAGGRLDVI  143 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~v~~~------------P~~~l~~id~~g~~~i~  143 (190)
                      ++++. .+++..|....+.+.||+...            |+.++  ||++|+++..
T Consensus        83 ~~~~~-~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~l--id~~G~i~~~  135 (154)
T PRK09437         83 EKELL-NFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFL--IDADGKIEHV  135 (154)
T ss_pred             HHhCC-CCeEEECCCchHHHHhCCCcccccccccccCcceEEEE--ECCCCEEEEE
Confidence            98875 577777878889999998654            67789  9999955333

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.70  E-value=1.6e-16  Score=115.24  Aligned_cols=111  Identities=15%  Similarity=0.322  Sum_probs=88.1

Q ss_pred             ccceeccCCCccceeeeeccCCc-EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQ-VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM  102 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k-~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~  102 (190)
                      .|++++.+.+++...++.+..++ ++|+.||++||++|+..++.|+++++++.+.  ++.+++|+.|.. +..+.|.+++
T Consensus         2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~~~-~~~~~~~~~~   78 (149)
T cd02970           2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPESP-EKLEAFDKGK   78 (149)
T ss_pred             CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCCCH-HHHHHHHHhc
Confidence            46777877777666555543444 4555557999999999999999999999876  499999998854 4456788877


Q ss_pred             CCCcccCCchhHHHHHHHcCCC-----------------------------CCCeeeeeeecCCCce
Q psy8729         103 PWPAIPYASETRQSLASLYNVH-----------------------------GIPSLILLAVEAGGRL  140 (190)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~v~-----------------------------~~P~~~l~~id~~g~~  140 (190)
                      ++ .+|+..|.+..+.++||+.                             .+|..++  ||++|++
T Consensus        79 ~~-~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fv--id~~g~i  142 (149)
T cd02970          79 FL-PFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFV--IGPDGTI  142 (149)
T ss_pred             CC-CCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEE--ECCCCeE
Confidence            65 6888899999999999984                             7999999  9999944

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.69  E-value=3.9e-16  Score=112.18  Aligned_cols=113  Identities=17%  Similarity=0.201  Sum_probs=93.8

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM  102 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~  102 (190)
                      .|+|.+.+.+++...++.+ .+++++|.|| ++||+.|...++.|+++++++...  ++.+++|+.| +.+.+++|.+++
T Consensus         2 ~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d-~~~~~~~~~~~~   77 (140)
T cd02971           2 APDFTLPATDGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVD-SPFSHKAWAEKE   77 (140)
T ss_pred             CCCceeccCCCcEEehHHh-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHHHHHHHhcc
Confidence            4677888877777777766 7899999999 789999999999999999999655  5899999987 567789999988


Q ss_pred             CCCcccCCchhHHHHHHHcCCCCCC---------eeeeeeecCCCceEE
Q psy8729         103 PWPAIPYASETRQSLASLYNVHGIP---------SLILLAVEAGGRLDV  142 (190)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~v~~~P---------~~~l~~id~~g~~~i  142 (190)
                      +-..+++..|....+.+.||+...|         ++++  ||++|++..
T Consensus        78 ~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~l--id~~g~i~~  124 (140)
T cd02971          78 GGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFI--IDPDGKIRY  124 (140)
T ss_pred             cCCCceEEECCChHHHHHcCCccccccccCceeEEEEE--ECCCCcEEE
Confidence            4346777888888999999988766         7899  999995433

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.69  E-value=4.4e-16  Score=113.14  Aligned_cols=114  Identities=18%  Similarity=0.249  Sum_probs=91.1

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      +...|.+.+.+.++....++.+...++++|.|| ++||+.|...+|.|+++++++.+.  ++++++|+.| ..+.+++|+
T Consensus         4 G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d-~~~~~~~~~   80 (149)
T cd03018           4 GDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVD-SPFSLRAWA   80 (149)
T ss_pred             CCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCC-CHHHHHHHH
Confidence            345677888887777666666633388888888 999999999999999999999875  4899999987 466789999


Q ss_pred             hCCCCCcccCCchhH--HHHHHHcCCCC----C--CeeeeeeecCCCce
Q psy8729         100 SGMPWPAIPYASETR--QSLASLYNVHG----I--PSLILLAVEAGGRL  140 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~--~~~~~~~~v~~----~--P~~~l~~id~~g~~  140 (190)
                      ++++. .+++..|..  ..+.+.||+..    +  |++++  ||++|++
T Consensus        81 ~~~~~-~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~l--id~~G~v  126 (149)
T cd03018          81 EENGL-TFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFV--IDRDGII  126 (149)
T ss_pred             HhcCC-CceEecCCCchhHHHHHhCCccccCCCccceEEE--ECCCCEE
Confidence            98875 567777765  88999999873    3  38899  9999944

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.68  E-value=2.2e-16  Score=115.65  Aligned_cols=115  Identities=17%  Similarity=0.148  Sum_probs=84.7

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHHHHH
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSESSYQ   96 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~~~~   96 (190)
                      ..+|++.+.+|+...++.+ +||++||.||++|||+|+..+|.|++++++|.++  ++.+++|+++       ++.+.++
T Consensus         2 ~~~f~l~~~~G~~~~l~~~-~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~~~~~~~~~d~~~~~~   78 (153)
T TIGR02540         2 FYSFEVKDARGRTVSLEKY-RGKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPCNQFGESEPDSSKEIE   78 (153)
T ss_pred             cccceeECCCCCEecHHHh-CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEeccccccCCCCCHHHHH
Confidence            3567788888777777776 7899999999999999999999999999999876  4999999852       4567899


Q ss_pred             HHHhC-CCCCcccCCch-----hHHHHHHHcC---CCCCCe----eeeeeecCCCceEEEc
Q psy8729          97 SYLSG-MPWPAIPYASE-----TRQSLASLYN---VHGIPS----LILLAVEAGGRLDVIT  144 (190)
Q Consensus        97 ~~~~~-~~~~~~~~~~~-----~~~~~~~~~~---v~~~P~----~~l~~id~~g~~~i~~  144 (190)
                      +|+++ ++. .+|+..+     ........|.   ..++|+    .|+  ||++|++....
T Consensus        79 ~f~~~~~~~-~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tfl--ID~~G~v~~~~  136 (153)
T TIGR02540        79 SFARRNYGV-TFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYL--VNPEGQVVKFW  136 (153)
T ss_pred             HHHHHhcCC-CCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEE--EcCCCcEEEEE
Confidence            99975 664 4566533     1111111222   246898    899  99999554443

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.68  E-value=7.4e-16  Score=116.12  Aligned_cols=114  Identities=17%  Similarity=0.236  Sum_probs=83.2

Q ss_pred             CcccceeccCCCccceeeeeccCCcEE-EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-------CHH
Q psy8729          22 KKTYNIGLAEGTVTTKVLSYIESCQVI-GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-------SES   93 (190)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~~~~~k~v-lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-------~~~   93 (190)
                      ...|+|++.+.++....++.+ +|+++ ++.+||+|||+|+.++|.|++++++|.++  ++.+++|+++.       +.+
T Consensus        18 ~~~p~f~l~d~~G~~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~~~~~~~~~~~~   94 (183)
T PTZ00256         18 KSFFEFEAIDIDGQLVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCNQFMEQEPWDEP   94 (183)
T ss_pred             CcccceEeEcCCCCEEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecccccccCCCCHH
Confidence            457889988888877777776 67754 56679999999999999999999999876  49999998642       347


Q ss_pred             HHHHHHh-CCCCCcccCCch--hH----HHHH------------HHcCCCCCCe---eeeeeecCCCceE
Q psy8729          94 SYQSYLS-GMPWPAIPYASE--TR----QSLA------------SLYNVHGIPS---LILLAVEAGGRLD  141 (190)
Q Consensus        94 ~~~~~~~-~~~~~~~~~~~~--~~----~~~~------------~~~~v~~~P~---~~l~~id~~g~~~  141 (190)
                      +++.|+. ++++ .+|+..+  .+    ..+.            ..+++.++|+   .|+  ||++|++.
T Consensus        95 ~~~~f~~~~~~~-~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tfl--ID~~G~Iv  161 (183)
T PTZ00256         95 EIKEYVQKKFNV-DFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFL--IDGQGKVV  161 (183)
T ss_pred             HHHHHHHHhcCC-CCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEE--ECCCCCEE
Confidence            7888875 6664 4565533  11    1222            1235778995   589  99999553

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.68  E-value=3.5e-16  Score=116.85  Aligned_cols=117  Identities=17%  Similarity=0.218  Sum_probs=89.2

Q ss_pred             CcccceeccCCCc----cceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          22 KKTYNIGLAEGTV----TTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        22 ~~~~~~~l~~~~~----~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      ..+|+|.+.+..+    ....++.+ +|+++||+|| ++||++|...++.|++++++|.+.  ++.+++|+.|.. +..+
T Consensus         3 ~~aP~f~~~~~~g~~~~~~~~l~~~-~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~--~v~vv~Is~d~~-~~~~   78 (173)
T cd03015           3 KKAPDFKATAVVPNGEFKEISLSDY-KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL--NAEVLGVSTDSH-FSHL   78 (173)
T ss_pred             CcCCCCEeecccCCCCceEEehHHh-CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEecCCH-HHHH
Confidence            4567777766544    34555555 6899999999 899999999999999999999876  489999998753 3344


Q ss_pred             HHHhCCC------CCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEEc
Q psy8729          97 SYLSGMP------WPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        97 ~~~~~~~------~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~~  144 (190)
                      .|.+..+      -..+++..|....+.+.||+.      .+|++++  ||++|+++...
T Consensus        79 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~l--ID~~G~I~~~~  136 (173)
T cd03015          79 AWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFI--IDPEGIIRHIT  136 (173)
T ss_pred             HHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEE--ECCCCeEEEEE
Confidence            5554421      135778888889999999986      6789999  99999554333

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.66  E-value=6.7e-16  Score=142.28  Aligned_cols=113  Identities=19%  Similarity=0.211  Sum_probs=89.1

Q ss_pred             CcccceeccC--CCccceee-eeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC---CC--CHH
Q psy8729          22 KKTYNIGLAE--GTVTTKVL-SYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS---DR--SES   93 (190)
Q Consensus        22 ~~~~~~~l~~--~~~~~~~~-~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~---d~--~~~   93 (190)
                      ...|+|...+  .++....+ +.+ +++++||+|||+||++|+.++|.|++++++|+++  ++.+++|+.   |.  +.+
T Consensus       395 ~~~p~f~~~~~~~~g~~~~l~~~l-kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~  471 (1057)
T PLN02919        395 TKVPEFPPKLDWLNTAPLQFRRDL-KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLE  471 (1057)
T ss_pred             CcCCCCcccccccCCccccchhhc-CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHH
Confidence            3556666543  33433333 344 7999999999999999999999999999999865  499999974   32  457


Q ss_pred             HHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          94 SYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      .+++++.++++ .+|...|....+.++|++.++|++++  ||++|++
T Consensus       472 ~~~~~~~~~~i-~~pvv~D~~~~~~~~~~V~~iPt~il--id~~G~i  515 (1057)
T PLN02919        472 AIRNAVLRYNI-SHPVVNDGDMYLWRELGVSSWPTFAV--VSPNGKL  515 (1057)
T ss_pred             HHHHHHHHhCC-CccEEECCchHHHHhcCCCccceEEE--ECCCCeE
Confidence            88999998875 45666777888999999999999999  9999954

>TIGR03137 AhpC peroxiredoxin

Probab=99.66  E-value=4.9e-16  Score=117.49  Aligned_cols=117  Identities=13%  Similarity=0.146  Sum_probs=88.5

Q ss_pred             CCcccceeccC-CCcc--ceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          21 AKKTYNIGLAE-GTVT--TKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        21 ~~~~~~~~l~~-~~~~--~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      +...|+|++.+ .++.  ...++.+ .|+++||+|| ++||+.|+.+++.|+++++++.+.  ++++++|+.|. .+..+
T Consensus         5 G~~aP~f~l~~~~~g~~~~~sl~d~-~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~D~-~~~~~   80 (187)
T TIGR03137         5 NTEIKPFKATAYHNGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVSTDT-HFVHK   80 (187)
T ss_pred             CCcCCCcEeeeccCCceeEecHHHH-CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeCCC-HHHHH
Confidence            34578888776 3443  2333444 6899999999 999999999999999999999876  48899999885 34455


Q ss_pred             HHHhCC---CCCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEE
Q psy8729          97 SYLSGM---PWPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        97 ~~~~~~---~~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~  143 (190)
                      .|.+..   .-..+|+..|.+..+++.||+.      ..|++|+  ||++|+++..
T Consensus        81 ~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfi--ID~~G~I~~~  134 (187)
T TIGR03137        81 AWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFV--IDPEGVIQAV  134 (187)
T ss_pred             HHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEE--ECCCCEEEEE
Confidence            555432   1235678888889999999986      4699999  9999955433

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.66  E-value=5.5e-16  Score=116.01  Aligned_cols=102  Identities=8%  Similarity=0.063  Sum_probs=75.3

Q ss_pred             ceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEE------EEeeCCCCHHHHHHHHh----CC--C
Q psy8729          36 TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEI------IFVSSDRSESSYQSYLS----GM--P  103 (190)
Q Consensus        36 ~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~i------i~i~~d~~~~~~~~~~~----~~--~  103 (190)
                      ...++.+ .||+.+|.|||+||++|+.+.|.|.++.++      ++.+      ++|+.|+.......|++    +.  +
T Consensus        51 ~~~~~~l-~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~  123 (184)
T TIGR01626        51 PWGSAEL-AGKVRVVHHIAGRTSAKEXNASLIDAIKAA------KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKE  123 (184)
T ss_pred             eccHHHc-CCCEEEEEEEecCCChhhccchHHHHHHHc------CCCcccccceEEEECccchhhHHHHHHHHHHHhccc
Confidence            3334444 699999999999999999999999988432      2556      88998876555555544    33  3


Q ss_pred             CCcccCCchhHHHHHHHcCCCCCCee-eeeeecCCCceEEEccc
Q psy8729         104 WPAIPYASETRQSLASLYNVHGIPSL-ILLAVEAGGRLDVITTE  146 (190)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~v~~~P~~-~l~~id~~g~~~i~~~~  146 (190)
                      ++..++..|.+..+...||+.++|++ |+  ||++|+++....+
T Consensus       124 ~P~~~vllD~~g~v~~~~gv~~~P~T~fV--IDk~GkVv~~~~G  165 (184)
T TIGR01626       124 NPWSQVVLDDKGAVKNAWQLNSEDSAIIV--LDKTGKVKFVKEG  165 (184)
T ss_pred             CCcceEEECCcchHHHhcCCCCCCceEEE--ECCCCcEEEEEeC
Confidence            33334667777888999999999988 89  9999965444433

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.65  E-value=9.9e-16  Score=104.94  Aligned_cols=70  Identities=16%  Similarity=0.329  Sum_probs=59.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+|||+||++|+.+.|.|+++++++ .   ++.++.|+.|.+.+                    ...++++|+|
T Consensus        14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~---~v~~~~vd~d~~~~--------------------~~~l~~~~~V   69 (103)
T cd02985          14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N---DVVFLLVNGDENDS--------------------TMELCRREKI   69 (103)
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C---CCEEEEEECCCChH--------------------HHHHHHHcCC
Confidence            5899999999999999999999999999988 2   37788888875432                    3578899999


Q ss_pred             CCCCeeeeeeecCCCce
Q psy8729         124 HGIPSLILLAVEAGGRL  140 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~~  140 (190)
                      .++||+++  + ++|++
T Consensus        70 ~~~Pt~~~--~-~~G~~   83 (103)
T cd02985          70 IEVPHFLF--Y-KDGEK   83 (103)
T ss_pred             CcCCEEEE--E-eCCeE
Confidence            99999888  7 78843

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.64  E-value=1.4e-15  Score=105.23  Aligned_cols=66  Identities=17%  Similarity=0.339  Sum_probs=58.1

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .++++||+|||+||++|+.+.|.|.++++++++.   +.++.|++|.                       .+.+.++|+|
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~-----------------------~~~la~~~~V   66 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDE-----------------------VPDFNKMYEL   66 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCC-----------------------CHHHHHHcCC
Confidence            5779999999999999999999999999998653   6788888875                       4688999999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++||+++  + ++|
T Consensus        67 ~~iPTf~~--f-k~G   78 (114)
T cd02954          67 YDPPTVMF--F-FRN   78 (114)
T ss_pred             CCCCEEEE--E-ECC
Confidence            99999999  7 467

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.63  E-value=1.5e-15  Score=109.98  Aligned_cols=72  Identities=19%  Similarity=0.490  Sum_probs=61.4

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.+.++++++.+.   +.++.|++|.+.                     ...+.+.|+
T Consensus        18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~---------------------~~~~~~~~~   73 (142)
T cd02950          18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPK---------------------WLPEIDRYR   73 (142)
T ss_pred             hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCcc---------------------cHHHHHHcC
Confidence            47899999999999999999999999999998643   778888887532                     246788999


Q ss_pred             CCCCCeeeeeeecCCCce
Q psy8729         123 VHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~~  140 (190)
                      |.++|++++  ++++|++
T Consensus        74 V~~iPt~v~--~~~~G~~   89 (142)
T cd02950          74 VDGIPHFVF--LDREGNE   89 (142)
T ss_pred             CCCCCEEEE--ECCCCCE
Confidence            999999999  9989943

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.63  E-value=2.3e-15  Score=112.15  Aligned_cols=94  Identities=19%  Similarity=0.296  Sum_probs=70.9

Q ss_pred             CcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhC
Q psy8729          22 KKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG  101 (190)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~  101 (190)
                      ..++.|.+.++  ....++.+   +  +|.||++|||+|++++|.|+++++++.     +.+++|++|...+        
T Consensus        53 ~~~~~f~l~dG--~~v~lsd~---~--lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~--------  112 (181)
T PRK13728         53 PAPRWFRLSNG--RQVNLADW---K--VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGD--------  112 (181)
T ss_pred             CCCCccCCCCC--CEeehhHc---e--EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCC--------
Confidence            35677777644  34444443   2  778999999999999999999999972     7899999885431        


Q ss_pred             CCCCcccCCch-hHHHHHHHcCC--CCCCeeeeeeecCCCce
Q psy8729         102 MPWPAIPYASE-TRQSLASLYNV--HGIPSLILLAVEAGGRL  140 (190)
Q Consensus       102 ~~~~~~~~~~~-~~~~~~~~~~v--~~~P~~~l~~id~~g~~  140 (190)
                         ..+|...+ ....+.+.||+  .++|++|+  ||++|++
T Consensus       113 ---~~fPv~~dd~~~~~~~~~g~~~~~iPttfL--Id~~G~i  149 (181)
T PRK13728        113 ---TAFPEALPAPPDVMQTFFPNIPVATPTTFL--VNVNTLE  149 (181)
T ss_pred             ---CCCceEecCchhHHHHHhCCCCCCCCeEEE--EeCCCcE
Confidence               35666664 45567788995  69999999  9999954

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=7.7e-15  Score=106.54  Aligned_cols=119  Identities=18%  Similarity=0.258  Sum_probs=103.3

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      ..+..+|+|+|++.++....++++ .|+++||+|| ..++|.|..++-.+++.+.++.+.  +..+++||.| +.+..++
T Consensus         5 ~~G~~aPdF~Lp~~~g~~v~Lsd~-~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~--~a~V~GIS~D-s~~~~~~   80 (157)
T COG1225           5 KVGDKAPDFELPDQDGETVSLSDL-RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL--GAVVLGISPD-SPKSHKK   80 (157)
T ss_pred             CCCCcCCCeEeecCCCCEEehHHh-cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC--CCEEEEEeCC-CHHHHHH
Confidence            456678999999999888777777 7889999999 899999999999999999999886  5999999998 7888999


Q ss_pred             HHhCCCCCcccCCchhHHHHHHHcCCC------------CCCeeeeeeecCCCceEEEc
Q psy8729          98 YLSGMPWPAIPYASETRQSLASLYNVH------------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~v~------------~~P~~~l~~id~~g~~~i~~  144 (190)
                      |.++++.. ++++.|.+..++++||+.            ..+++|+  ||++|+++.+.
T Consensus        81 F~~k~~L~-f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~Tfv--Id~dG~I~~~~  136 (157)
T COG1225          81 FAEKHGLT-FPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFV--IDPDGKIRYVW  136 (157)
T ss_pred             HHHHhCCC-ceeeECCcHHHHHHhCcccccccCccccccccceEEE--ECCCCeEEEEe
Confidence            99999975 999999999999999973            3578999  99999654444

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.62  E-value=2.2e-15  Score=115.21  Aligned_cols=116  Identities=16%  Similarity=0.184  Sum_probs=88.3

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEE-EEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHH--H-HH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGL-YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSES--S-YQ   96 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv-~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~--~-~~   96 (190)
                      +...|+|++.+..+. ..++.+ +|++++| .||++|||.|..+++.|+++++++.++  ++++++||+|....  + .+
T Consensus         5 G~~aP~F~~~~~~g~-v~l~d~-~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~   80 (202)
T PRK13190          5 GQKAPDFTVNTTKGP-IDLSKY-KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLR   80 (202)
T ss_pred             CCCCCCcEEecCCCc-EeHHHh-CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHH
Confidence            445677877766553 344444 6777665 689999999999999999999999876  48999999985422  2 23


Q ss_pred             HHHhCCCC-CcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEE
Q psy8729          97 SYLSGMPW-PAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDV  142 (190)
Q Consensus        97 ~~~~~~~~-~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i  142 (190)
                      .+.++.+. ..+|+..|.+..+.+.||+.      ++|++++  ||++|+++.
T Consensus        81 ~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fi--Id~~G~I~~  131 (202)
T PRK13190         81 DIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFI--IDPNQIVRW  131 (202)
T ss_pred             hHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEE--ECCCCEEEE
Confidence            44445553 46899999999999999984      5899999  999995543

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.62  E-value=2.7e-15  Score=115.61  Aligned_cols=118  Identities=12%  Similarity=0.183  Sum_probs=92.6

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEE-EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCC--HHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVI-GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRS--ESSYQS   97 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~v-lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~--~~~~~~   97 (190)
                      +...|+|.+.+..|....++.+ .|+++ |+.||++|||.|..+++.|++++++|.++|  +++++||+|..  ...|.+
T Consensus         5 Gd~aPdF~l~t~~G~~~~~~~~-~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~~   81 (215)
T PRK13599          5 GEKFPSMEVVTTQGVKRLPEDY-AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWVE   81 (215)
T ss_pred             CCCCCCCEeECCCCcEecHHHH-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHH
Confidence            4567888888777766555665 57765 678999999999999999999999998874  89999999853  334666


Q ss_pred             HHhCC-C-CCcccCCchhHHHHHHHcCCC-------CCCeeeeeeecCCCceEEE
Q psy8729          98 YLSGM-P-WPAIPYASETRQSLASLYNVH-------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        98 ~~~~~-~-~~~~~~~~~~~~~~~~~~~v~-------~~P~~~l~~id~~g~~~i~  143 (190)
                      ++++. + -..+|+..|.+..+++.||+.       .+|++|+  ||++|+++..
T Consensus        82 ~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfI--ID~dG~Ir~~  134 (215)
T PRK13599         82 WIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFI--VDDKGTIRLI  134 (215)
T ss_pred             hHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEE--ECCCCEEEEE
Confidence            66643 2 246888899889999999983       5899999  9999965443

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.61  E-value=4e-15  Score=103.44  Aligned_cols=85  Identities=13%  Similarity=0.126  Sum_probs=66.2

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCC
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPW  104 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~  104 (190)
                      ..+.|++.+++..+.- ..++++++|.|||+||++|+.+.|.+.++++++++.   +.+..|++|.+             
T Consensus        10 ~v~~l~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~-------------   72 (113)
T cd03006          10 PVLDFYKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWP-------------   72 (113)
T ss_pred             CeEEechhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC-------------
Confidence            4566777776654211 137889999999999999999999999999998653   77888887743             


Q ss_pred             CcccCCchhHHHHH-HHcCCCCCCeeeeeeecCCCc
Q psy8729         105 PAIPYASETRQSLA-SLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       105 ~~~~~~~~~~~~~~-~~~~v~~~P~~~l~~id~~g~  139 (190)
                                ..++ ++|+|.++||+.+  + ++|+
T Consensus        73 ----------~~l~~~~~~I~~~PTl~l--f-~~g~   95 (113)
T cd03006          73 ----------QGKCRKQKHFFYFPVIHL--Y-YRSR   95 (113)
T ss_pred             ----------hHHHHHhcCCcccCEEEE--E-ECCc
Confidence                      4567 5899999999999  7 5664

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.61  E-value=6e-15  Score=111.31  Aligned_cols=115  Identities=14%  Similarity=0.203  Sum_probs=88.5

Q ss_pred             cccceecc---CCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          23 KTYNIGLA---EGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        23 ~~~~~~l~---~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      ..|+|...   ++.+....++++ .||++||.|| ++||+.|..+++.|+++++++.+.  ++++++||.| +....+.|
T Consensus         7 ~~p~f~~~~~~~g~~~~v~L~d~-~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D-~~~~~~a~   82 (187)
T PRK10382          7 KIKPFKNQAFKNGEFIEVTEKDT-EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTD-THFTHKAW   82 (187)
T ss_pred             cCCCcEEEEEeCCcceEEEHHHh-CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCC-CHHHHHHH
Confidence            34444433   345444444555 6889999999 999999999999999999999876  4899999987 55667777


Q ss_pred             HhCC---CCCcccCCchhHHHHHHHcCC----CCC--CeeeeeeecCCCceEEE
Q psy8729          99 LSGM---PWPAIPYASETRQSLASLYNV----HGI--PSLILLAVEAGGRLDVI  143 (190)
Q Consensus        99 ~~~~---~~~~~~~~~~~~~~~~~~~~v----~~~--P~~~l~~id~~g~~~i~  143 (190)
                      .+..   .-..+|+..|.+..+++.||+    .++  |++++  ||++|+++..
T Consensus        83 ~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfI--ID~~G~I~~~  134 (187)
T PRK10382         83 HSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFV--VDPQGIIQAI  134 (187)
T ss_pred             HHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEE--ECCCCEEEEE
Confidence            7643   124678889999999999998    356  99999  9999955433

>PRK15000 peroxidase; Provisional

Probab=99.61  E-value=9.3e-15  Score=111.53  Aligned_cols=118  Identities=11%  Similarity=0.156  Sum_probs=87.9

Q ss_pred             CCcccceeccCC--Cccceeeeec---cCCcEEEEEEEc-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHH
Q psy8729          21 AKKTYNIGLAEG--TVTTKVLSYI---ESCQVIGLYFSA-HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESS   94 (190)
Q Consensus        21 ~~~~~~~~l~~~--~~~~~~~~~~---~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~   94 (190)
                      +...|+|++.+.  ++.......+   .++++++|.||+ .||+.|..+++.|++++++|.++  ++++++||.|.. +.
T Consensus         5 g~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~-~~   81 (200)
T PRK15000          5 TRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSE-FV   81 (200)
T ss_pred             CCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCH-HH
Confidence            345677777753  2332112222   268999999998 59999999999999999999886  499999999843 33


Q ss_pred             HHHH----HhCCCC--CcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEE
Q psy8729          95 YQSY----LSGMPW--PAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        95 ~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~  143 (190)
                      .+.|    .++.+.  ..+|+..|.+..+++.||+.      ++|..++  ||++|+++..
T Consensus        82 ~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfi--ID~~G~I~~~  140 (200)
T PRK15000         82 HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFL--IDANGIVRHQ  140 (200)
T ss_pred             HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEE--ECCCCEEEEE
Confidence            3333    333443  47888899999999999997      7999999  9999955443

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.60  E-value=5e-15  Score=114.15  Aligned_cols=119  Identities=14%  Similarity=0.193  Sum_probs=91.5

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEE-EEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHH--HHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGL-YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSES--SYQS   97 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv-~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~--~~~~   97 (190)
                      +...|+|.+.+..+.....+.+ +|++++| .||++||+.|..+++.|++++++|.++|  +++++||+|....  .|.+
T Consensus        10 G~~aPdF~l~~~~G~~~l~~~~-~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~~   86 (215)
T PRK13191         10 GEKFPEMEVITTHGKIKLPDDY-KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWVM   86 (215)
T ss_pred             CCcCCCCEeecCCCCEEcHHHh-CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHh
Confidence            4567888888776654444544 5776655 7889999999999999999999998874  8999999986433  4555


Q ss_pred             HHhCC-C-CCcccCCchhHHHHHHHcCCC-------CCCeeeeeeecCCCceEEEc
Q psy8729          98 YLSGM-P-WPAIPYASETRQSLASLYNVH-------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        98 ~~~~~-~-~~~~~~~~~~~~~~~~~~~v~-------~~P~~~l~~id~~g~~~i~~  144 (190)
                      ++++. + -..+|+..|.+..++++||+.       ..|..++  ||++|+++.+.
T Consensus        87 ~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfI--ID~~G~Ir~~~  140 (215)
T PRK13191         87 WIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFI--VDDKGTVRLIL  140 (215)
T ss_pred             hHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEE--ECCCCEEEEEE
Confidence            55532 2 246889999999999999973       4799999  99999665543

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.59  E-value=4e-15  Score=108.71  Aligned_cols=78  Identities=18%  Similarity=0.323  Sum_probs=57.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHH-HHHHc-
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQS-LASLY-  121 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-  121 (190)
                      .++..+|+||++||++|+.++|.|+++++++.     +.+++|+.|....           ..+|...+.+.. ..+.| 
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~-----------~~fp~~~~~~~~~~~~~~~  112 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGL-----------TGFPDPLPATPEVMQTFFP  112 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcc-----------cccccccCCchHHHHHHhc
Confidence            45566999999999999999999999998872     6788898875431           122322222222 33455 


Q ss_pred             --CCCCCCeeeeeeecCCCc
Q psy8729         122 --NVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       122 --~v~~~P~~~l~~id~~g~  139 (190)
                        ++.++|++++  ||++|+
T Consensus       113 ~~~v~~iPTt~L--ID~~G~  130 (153)
T TIGR02738       113 NPRPVVTPATFL--VNVNTR  130 (153)
T ss_pred             cCCCCCCCeEEE--EeCCCC
Confidence              8899999999  999984

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.58  E-value=7.9e-15  Score=99.91  Aligned_cols=78  Identities=22%  Similarity=0.327  Sum_probs=63.3

Q ss_pred             eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcc
Q psy8729          28 GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI  107 (190)
Q Consensus        28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~  107 (190)
                      .++..+++..+.    ++++++|.||++||++|+.+.|.+.++++++++   .+.+..|+++.                 
T Consensus         5 ~l~~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~~~-----------------   60 (101)
T cd03003           5 TLDRGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNCGD-----------------   60 (101)
T ss_pred             EcCHhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeCCc-----------------
Confidence            344455554442    568999999999999999999999999999864   37888888875                 


Q ss_pred             cCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         108 PYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                            ...++++|++.++||+++  + ++|
T Consensus        61 ------~~~~~~~~~v~~~Pt~~~--~-~~g   82 (101)
T cd03003          61 ------DRMLCRSQGVNSYPSLYV--F-PSG   82 (101)
T ss_pred             ------cHHHHHHcCCCccCEEEE--E-cCC
Confidence                  357899999999999999  7 567

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.57  E-value=2e-14  Score=113.27  Aligned_cols=119  Identities=14%  Similarity=0.107  Sum_probs=88.4

Q ss_pred             CCcccceeccC---CCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          21 AKKTYNIGLAE---GTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        21 ~~~~~~~~l~~---~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      +...|+|++.+   +.+....++.+.+++++|+.|| ++||+.|..+++.|+++++++.+.|  +++++||.|. ....+
T Consensus        71 Gd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds-~~~h~  147 (261)
T PTZ00137         71 GKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDS-PFSHK  147 (261)
T ss_pred             CCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHHH
Confidence            45678888765   3322334444435777777777 9999999999999999999998874  8999999986 44444


Q ss_pred             HHHh----CC--CCCcccCCchhHHHHHHHcCCC-----CCCeeeeeeecCCCceEEEc
Q psy8729          97 SYLS----GM--PWPAIPYASETRQSLASLYNVH-----GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        97 ~~~~----~~--~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~l~~id~~g~~~i~~  144 (190)
                      .|.+    +.  .-..+|+..|.+..+++.||+.     ..|+.++  ||++|+++...
T Consensus       148 aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFI--ID~dG~I~~~~  204 (261)
T PTZ00137        148 AWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVL--VDKAGVVKHVA  204 (261)
T ss_pred             HHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEE--ECCCCEEEEEE
Confidence            4443    22  1245888899899999999985     5899999  99999554433

>PRK13189 peroxiredoxin; Provisional

Probab=99.57  E-value=2.1e-14  Score=111.30  Aligned_cols=117  Identities=15%  Similarity=0.194  Sum_probs=87.8

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEE-EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVI-GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~v-lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      +...|+|++.+..+...+.+.+ +|+++ |+.||++||+.|..+++.|++++++|.++  ++++++||+|... ..+.|.
T Consensus        12 G~~aPdF~~~~~~g~~~l~d~~-~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~D~~~-~h~aw~   87 (222)
T PRK13189         12 GDKFPEFEVKTTHGPIKLPDDY-KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSIDQVF-SHIKWV   87 (222)
T ss_pred             CCcCCCcEeEcCCCCEeeHHHh-CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHH-HHHHHH
Confidence            4567788887766654444444 57755 55778999999999999999999999876  4899999998543 333443


Q ss_pred             h----CCCC-CcccCCchhHHHHHHHcCCC-------CCCeeeeeeecCCCceEEE
Q psy8729         100 S----GMPW-PAIPYASETRQSLASLYNVH-------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus       100 ~----~~~~-~~~~~~~~~~~~~~~~~~v~-------~~P~~~l~~id~~g~~~i~  143 (190)
                      +    ..+. ..+|+..|.+..+++.||+.       ++|++|+  ||++|+++.+
T Consensus        88 ~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfI--ID~~G~Ir~~  141 (222)
T PRK13189         88 EWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFI--IDPKGIIRAI  141 (222)
T ss_pred             HhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEE--ECCCCeEEEE
Confidence            3    2232 46888899999999999975       5799999  9999966444

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.57  E-value=2.3e-14  Score=109.65  Aligned_cols=116  Identities=12%  Similarity=0.175  Sum_probs=84.8

Q ss_pred             CcccceeccCCCccceeeeeccCCcEE-EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729          22 KKTYNIGLAEGTVTTKVLSYIESCQVI-GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS  100 (190)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~~~~~k~v-lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~  100 (190)
                      ...|+|++.+..+. ..++.+..++++ |+.||++|||.|..+++.|+++++++.++|  +++++|++|. .+..+.|.+
T Consensus         3 ~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~-~~~~~~~~~   78 (203)
T cd03016           3 DTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDS-VESHIKWIE   78 (203)
T ss_pred             CCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCC-HHHHHHHHh
Confidence            45678888766654 334444333554 557899999999999999999999998874  8999999985 333333433


Q ss_pred             C------CCCCcccCCchhHHHHHHHcCCC----C----CCeeeeeeecCCCceEEEc
Q psy8729         101 G------MPWPAIPYASETRQSLASLYNVH----G----IPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus       101 ~------~~~~~~~~~~~~~~~~~~~~~v~----~----~P~~~l~~id~~g~~~i~~  144 (190)
                      .      .+ ..+|+..|.+..+++.||+.    +    .|+.|+  ||++|+++...
T Consensus        79 ~i~~~~~~~-~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fi--ID~~G~I~~~~  133 (203)
T cd03016          79 DIEEYTGVE-IPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFI--IDPDKKIRLIL  133 (203)
T ss_pred             hHHHhcCCC-CceeEEECchHHHHHHcCCccccCCCCceeeEEEE--ECCCCeEEEEE
Confidence            2      23 46788899999999999985    2    356899  99999665443

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.56  E-value=1.8e-14  Score=98.57  Aligned_cols=80  Identities=26%  Similarity=0.436  Sum_probs=62.7

Q ss_pred             ccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCccc
Q psy8729          29 LAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP  108 (190)
Q Consensus        29 l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~  108 (190)
                      ++..+++..+.+   ++++++|.||++||++|+.+.|.+.++++++.+   .+.+..|+++.                  
T Consensus         6 l~~~~f~~~i~~---~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~------------------   61 (104)
T cd03004           6 LTPEDFPELVLN---RKEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDCQK------------------   61 (104)
T ss_pred             cCHHHHHHHHhc---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEECCc------------------
Confidence            444444444332   567999999999999999999999999999854   37777887764                  


Q ss_pred             CCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         109 YASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       109 ~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                           ...+++.|+|.++|++++  +.++|+
T Consensus        62 -----~~~~~~~~~i~~~Pt~~~--~~~g~~   85 (104)
T cd03004          62 -----YESLCQQANIRAYPTIRL--YPGNAS   85 (104)
T ss_pred             -----hHHHHHHcCCCcccEEEE--EcCCCC
Confidence                 457899999999999999  876643

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.56  E-value=1.7e-14  Score=97.20  Aligned_cols=66  Identities=24%  Similarity=0.400  Sum_probs=57.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+++++|+||++||++|+.+.|.++++++.+.+   .+.++.|+++.                       ...++++|++
T Consensus        11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~-----------------------~~~l~~~~~i   64 (96)
T cd02956          11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNCDA-----------------------QPQIAQQFGV   64 (96)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEeccC-----------------------CHHHHHHcCC
Confidence            478999999999999999999999999998864   37777777764                       3578999999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  ++ +|
T Consensus        65 ~~~Pt~~~--~~-~g   76 (96)
T cd02956          65 QALPTVYL--FA-AG   76 (96)
T ss_pred             CCCCEEEE--Ee-CC
Confidence            99999999  86 77

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.56  E-value=1.3e-14  Score=98.90  Aligned_cols=66  Identities=23%  Similarity=0.477  Sum_probs=55.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      +|++++|.|||+||++|+.+.|.+.++++++++    +.++.|+.+. .                     ...++++|++
T Consensus        17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~-~---------------------~~~l~~~~~V   70 (100)
T cd02999          17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESS-I---------------------KPSLLSRYGV   70 (100)
T ss_pred             CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCC-C---------------------CHHHHHhcCC
Confidence            799999999999999999999999999998853    5566665441 1                     3578899999


Q ss_pred             CCCCeeeeeeecCC
Q psy8729         124 HGIPSLILLAVEAG  137 (190)
Q Consensus       124 ~~~P~~~l~~id~~  137 (190)
                      .++||+++  ++++
T Consensus        71 ~~~PT~~l--f~~g   82 (100)
T cd02999          71 VGFPTILL--FNST   82 (100)
T ss_pred             eecCEEEE--EcCC
Confidence            99999999  8643

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.56  E-value=1.4e-14  Score=99.77  Aligned_cols=82  Identities=22%  Similarity=0.426  Sum_probs=65.2

Q ss_pred             eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcc
Q psy8729          28 GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI  107 (190)
Q Consensus        28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~  107 (190)
                      .+++.++...+.   ..+++++|.||++||++|+.+.|.+.++++++.+   .+.++.++++.+.               
T Consensus         4 ~l~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~~~~~---------------   62 (109)
T cd03002           4 ELTPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDCDEDK---------------   62 (109)
T ss_pred             EcchhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEecCccc---------------
Confidence            445555544443   2578899999999999999999999999999864   3778888887532               


Q ss_pred             cCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         108 PYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                            ...+++.|++.++|++++  +++++
T Consensus        63 ------~~~~~~~~~i~~~Pt~~~--~~~~~   85 (109)
T cd03002          63 ------NKPLCGKYGVQGFPTLKV--FRPPK   85 (109)
T ss_pred             ------cHHHHHHcCCCcCCEEEE--EeCCC
Confidence                  367899999999999999  87665

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.54  E-value=2.2e-14  Score=99.53  Aligned_cols=67  Identities=19%  Similarity=0.369  Sum_probs=58.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+++++|+||++||++|+.+.|.+.++++++.+.  ++.+..|+++.                       ...++++|+|
T Consensus        23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~-----------------------~~~l~~~~~V   77 (111)
T cd02963          23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGH-----------------------ERRLARKLGA   77 (111)
T ss_pred             CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccc-----------------------cHHHHHHcCC
Confidence            6899999999999999999999999999999753  47777777764                       3577899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  +. +|
T Consensus        78 ~~~Pt~~i--~~-~g   89 (111)
T cd02963          78 HSVPAIVG--II-NG   89 (111)
T ss_pred             ccCCEEEE--EE-CC
Confidence            99999999  84 77

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1.2e-14  Score=114.21  Aligned_cols=83  Identities=25%  Similarity=0.446  Sum_probs=69.4

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      .+.++..++...+.... ..++|+|+||+|||++|+.+.|.|.++...|+++   +.+..|++|.               
T Consensus        25 I~dvT~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~---------------   85 (304)
T COG3118          25 IKDVTEANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDA---------------   85 (304)
T ss_pred             ceechHhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCc---------------
Confidence            44456666766666553 5669999999999999999999999999999876   8888888886               


Q ss_pred             cccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                              .+.+..+|||.++|+.|.  + ++|
T Consensus        86 --------~p~vAaqfgiqsIPtV~a--f-~dG  107 (304)
T COG3118          86 --------EPMVAAQFGVQSIPTVYA--F-KDG  107 (304)
T ss_pred             --------chhHHHHhCcCcCCeEEE--e-eCC
Confidence                    368899999999999999  6 567

>KOG0910|consensus

Probab=99.54  E-value=1.8e-14  Score=103.00  Aligned_cols=67  Identities=28%  Similarity=0.591  Sum_probs=60.0

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      +++++|+|+|||+||.||+-+.|.|+++..+|.++   +++..|+.|.                       ..+++..|+
T Consensus        59 ~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~-----------------------~~ela~~Y~  112 (150)
T KOG0910|consen   59 NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDE-----------------------HPELAEDYE  112 (150)
T ss_pred             ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEcccc-----------------------ccchHhhcc
Confidence            47889999999999999999999999999999765   9999998886                       357899999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      |.++||+++  +. +|
T Consensus       113 I~avPtvlv--fk-nG  125 (150)
T KOG0910|consen  113 ISAVPTVLV--FK-NG  125 (150)
T ss_pred             eeeeeEEEE--EE-CC
Confidence            999999999  84 66

>PHA02278 thioredoxin-like protein

Probab=99.54  E-value=3.5e-14  Score=97.11  Aligned_cols=71  Identities=14%  Similarity=0.243  Sum_probs=56.8

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+|||+||++|+.+.|.+.++++++..   +..++.|++|.+..                  + ...+.++|+
T Consensus        12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~------------------d-~~~l~~~~~   69 (103)
T PHA02278         12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDV------------------D-REKAVKLFD   69 (103)
T ss_pred             hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCcccc------------------c-cHHHHHHCC
Confidence            3688999999999999999999999999877533   25677888775320                  0 246889999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      |.++||+++  + ++|
T Consensus        70 I~~iPT~i~--f-k~G   82 (103)
T PHA02278         70 IMSTPVLIG--Y-KDG   82 (103)
T ss_pred             CccccEEEE--E-ECC
Confidence            999999999  7 467

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.53  E-value=5.3e-14  Score=96.16  Aligned_cols=67  Identities=18%  Similarity=0.364  Sum_probs=56.4

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+|||+||++|+.+.|.+.++++++++.  .+.++.++.| +                       .++.++|+
T Consensus        15 ~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~--~~~~~~vd~d-~-----------------------~~~~~~~~   68 (102)
T cd02948          15 SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD--LLHFATAEAD-T-----------------------IDTLKRYR   68 (102)
T ss_pred             ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC--cEEEEEEeCC-C-----------------------HHHHHHcC
Confidence            36889999999999999999999999999988643  3677778777 2                       35689999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      +.++|++++  + ++|
T Consensus        69 v~~~Pt~~~--~-~~g   81 (102)
T cd02948          69 GKCEPTFLF--Y-KNG   81 (102)
T ss_pred             CCcCcEEEE--E-ECC
Confidence            999999988  7 477

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.52  E-value=1.6e-13  Score=104.79  Aligned_cols=117  Identities=19%  Similarity=0.256  Sum_probs=88.4

Q ss_pred             CCcccceecc----CCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          21 AKKTYNIGLA----EGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        21 ~~~~~~~~l~----~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      +...|+|.+.    ++++....++++ .|++++|+|| +.||+.|..+++.|+++++++.++  ++++++||.|.... .
T Consensus         9 G~~aPdF~~~~~~~~~~~~~v~l~d~-~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~-~   84 (199)
T PTZ00253          9 NHPAPSFEEVALMPNGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYA-H   84 (199)
T ss_pred             CCcCCCCEeeccccCCCCcEEeHHHH-CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHH-H
Confidence            4456777743    455555555665 6889999999 588999999999999999999987  49999999985433 3


Q ss_pred             HHHHh----C--CCCCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEE
Q psy8729          96 QSYLS----G--MPWPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        96 ~~~~~----~--~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~  143 (190)
                      ..+..    .  .+-..+|+..|.+..+++.||+.      .+|+.++  ||++|+++..
T Consensus        85 ~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fi--ID~~G~i~~~  142 (199)
T PTZ00253         85 LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFI--IDPKGMLRQI  142 (199)
T ss_pred             HHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEE--ECCCCEEEEE
Confidence            33322    1  12257899999999999999985      4689999  9999955443

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.52  E-value=9e-14  Score=95.70  Aligned_cols=67  Identities=22%  Similarity=0.281  Sum_probs=58.4

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      +++++||.|+++||++|+.+.|.|.++++++++.   +.++.|++|.                       .+.+.++|++
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDe-----------------------v~dva~~y~I   66 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDK-----------------------VPVYTQYFDI   66 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccc-----------------------cHHHHHhcCc
Confidence            6899999999999999999999999999999643   7788888875                       4689999999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .+.|++++  +.++.
T Consensus        67 ~amPtfvf--fkngk   79 (114)
T cd02986          67 SYIPSTIF--FFNGQ   79 (114)
T ss_pred             eeCcEEEE--EECCc
Confidence            99999999  85444

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.51  E-value=1.4e-13  Score=94.31  Aligned_cols=69  Identities=28%  Similarity=0.471  Sum_probs=57.5

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|.||++||++|+.+.|.++++++.++..+..+.+..++++.                       ...+++.|++
T Consensus        14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~I   70 (104)
T cd03000          14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-----------------------YSSIASEFGV   70 (104)
T ss_pred             cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc-----------------------CHhHHhhcCC
Confidence            56789999999999999999999999999997654457777777653                       2467889999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  ++ +|
T Consensus        71 ~~~Pt~~l--~~-~~   82 (104)
T cd03000          71 RGYPTIKL--LK-GD   82 (104)
T ss_pred             ccccEEEE--Ec-CC
Confidence            99999999  84 44

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.51  E-value=1.3e-13  Score=94.40  Aligned_cols=73  Identities=19%  Similarity=0.380  Sum_probs=58.9

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS  119 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (190)
                      .++++++|+||++||++|+.+.+.+   .++.+.+.+   ++.++.|+++.+..                   ....+.+
T Consensus         9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~-------------------~~~~~~~   66 (104)
T cd02953           9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDP-------------------EITALLK   66 (104)
T ss_pred             HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCH-------------------HHHHHHH
Confidence            4789999999999999999999887   567777754   48888887764321                   1467889


Q ss_pred             HcCCCCCCeeeeeeecC-CCc
Q psy8729         120 LYNVHGIPSLILLAVEA-GGR  139 (190)
Q Consensus       120 ~~~v~~~P~~~l~~id~-~g~  139 (190)
                      +|++.++|++++  +++ +|+
T Consensus        67 ~~~i~~~Pti~~--~~~~~g~   85 (104)
T cd02953          67 RFGVFGPPTYLF--YGPGGEP   85 (104)
T ss_pred             HcCCCCCCEEEE--ECCCCCC
Confidence            999999999999  987 774

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.50  E-value=1.3e-13  Score=95.05  Aligned_cols=82  Identities=24%  Similarity=0.419  Sum_probs=63.1

Q ss_pred             eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcC---CcEEEEEeeCCCCHHHHHHHHhCCCC
Q psy8729          28 GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDG---YQFEIIFVSSDRSESSYQSYLSGMPW  104 (190)
Q Consensus        28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g---~~~~ii~i~~d~~~~~~~~~~~~~~~  104 (190)
                      .+++.+++..+    ..+++++|.||++||++|+.+.|.++++++.+++..   ..+.+..|++|.              
T Consensus         5 ~l~~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~--------------   66 (108)
T cd02996           5 SLTSGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK--------------   66 (108)
T ss_pred             EcCHhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC--------------
Confidence            34444554432    367899999999999999999999999998876431   147777777765              


Q ss_pred             CcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         105 PAIPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                               ...++++|++.++|++++  + ++|+
T Consensus        67 ---------~~~l~~~~~v~~~Ptl~~--~-~~g~   89 (108)
T cd02996          67 ---------ESDIADRYRINKYPTLKL--F-RNGM   89 (108)
T ss_pred             ---------CHHHHHhCCCCcCCEEEE--E-eCCc
Confidence                     357899999999999999  7 5773

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.50  E-value=1.1e-13  Score=96.57  Aligned_cols=86  Identities=24%  Similarity=0.366  Sum_probs=64.1

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      +.++..++...+.+   .+++++|+||++||++|+.+.|.+.++++++++....+.+..++++.+.              
T Consensus         4 ~~l~~~~f~~~i~~---~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--------------   66 (114)
T cd02992           4 IVLDAASFNSALLG---SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--------------   66 (114)
T ss_pred             EECCHHhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--------------
Confidence            34444455444432   4579999999999999999999999999998754234677667655322              


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                             ...+++.|++.++|++++  +.+++
T Consensus        67 -------~~~~~~~~~i~~~Pt~~l--f~~~~   89 (114)
T cd02992          67 -------NVALCRDFGVTGYPTLRY--FPPFS   89 (114)
T ss_pred             -------hHHHHHhCCCCCCCEEEE--ECCCC
Confidence                   467899999999999999  85443

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.50  E-value=1e-13  Score=94.20  Aligned_cols=67  Identities=27%  Similarity=0.512  Sum_probs=55.9

Q ss_pred             EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCC
Q psy8729          47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGI  126 (190)
Q Consensus        47 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  126 (190)
                      .++|.||++||++|+.+.|.++++++++.+....+.+..++++.                       ...+++.|++.++
T Consensus        18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~v~~~   74 (102)
T cd03005          18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ-----------------------HRELCSEFQVRGY   74 (102)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC-----------------------ChhhHhhcCCCcC
Confidence            48999999999999999999999999997632357888777664                       3477889999999


Q ss_pred             CeeeeeeecCCCc
Q psy8729         127 PSLILLAVEAGGR  139 (190)
Q Consensus       127 P~~~l~~id~~g~  139 (190)
                      |++++  + ++|+
T Consensus        75 Pt~~~--~-~~g~   84 (102)
T cd03005          75 PTLLL--F-KDGE   84 (102)
T ss_pred             CEEEE--E-eCCC
Confidence            99999  8 4663

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.48  E-value=2.7e-13  Score=95.86  Aligned_cols=83  Identities=18%  Similarity=0.408  Sum_probs=61.2

Q ss_pred             cCC-cEEEEEEEcCCChhhhhhhHHHH---HHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHH
Q psy8729          43 ESC-QVIGLYFSAHWCPPCKAFTPQLI---ETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLA  118 (190)
Q Consensus        43 ~~~-k~vlv~F~a~wC~~C~~~~~~l~---~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (190)
                      .++ ++++|+||++||++|+.+.+.+.   .+.+.+.+   ++.++.|+++.+.... .|         .........+.
T Consensus        11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~-~~---------~~~~~~~~~l~   77 (125)
T cd02951          11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVT-DF---------DGEALSEKELA   77 (125)
T ss_pred             HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceee-cc---------CCCCccHHHHH
Confidence            467 89999999999999999999884   55566553   3788888887543211 11         11112357889


Q ss_pred             HHcCCCCCCeeeeeeecCC-Cce
Q psy8729         119 SLYNVHGIPSLILLAVEAG-GRL  140 (190)
Q Consensus       119 ~~~~v~~~P~~~l~~id~~-g~~  140 (190)
                      ++|++.++|++++  ++++ |++
T Consensus        78 ~~~~v~~~Pt~~~--~~~~gg~~   98 (125)
T cd02951          78 RKYRVRFTPTVIF--LDPEGGKE   98 (125)
T ss_pred             HHcCCccccEEEE--EcCCCCce
Confidence            9999999999999  9998 743

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>KOG0907|consensus

Probab=99.48  E-value=1.4e-13  Score=94.41  Aligned_cols=66  Identities=27%  Similarity=0.610  Sum_probs=58.2

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      +++.++|+|+|+||++|+.+.|.+.+++.+|++    +.++.+++|.                       ...+++.+++
T Consensus        20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde-----------------------~~~~~~~~~V   72 (106)
T KOG0907|consen   20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE-----------------------LEEVAKEFNV   72 (106)
T ss_pred             CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc-----------------------CHhHHHhcCc
Confidence            579999999999999999999999999999963    7788888875                       3688999999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++||+.+  + ++|+
T Consensus        73 ~~~PTf~f--~-k~g~   85 (106)
T KOG0907|consen   73 KAMPTFVF--Y-KGGE   85 (106)
T ss_pred             eEeeEEEE--E-ECCE
Confidence            99999999  7 5663

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.48  E-value=3e-13  Score=93.48  Aligned_cols=70  Identities=20%  Similarity=0.411  Sum_probs=58.1

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH-HcC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS-LYN  122 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  122 (190)
                      ++++++|.||++||++|+.+.|.+.++++.+++.  ++.+..|++|.+.                      ..++. .|+
T Consensus        20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~--~~~~~~vd~d~~~----------------------~~~~~~~~~   75 (109)
T cd02993          20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS--NVKVAKFNADGEQ----------------------REFAKEELQ   75 (109)
T ss_pred             cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECCccc----------------------hhhHHhhcC
Confidence            6789999999999999999999999999998743  5888888887522                      34555 599


Q ss_pred             CCCCCeeeeeeecCCCc
Q psy8729         123 VHGIPSLILLAVEAGGR  139 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~  139 (190)
                      +.++||+++  ++++++
T Consensus        76 v~~~Pti~~--f~~~~~   90 (109)
T cd02993          76 LKSFPTILF--FPKNSR   90 (109)
T ss_pred             CCcCCEEEE--EcCCCC
Confidence            999999999  877663

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.46  E-value=3e-13  Score=91.94  Aligned_cols=78  Identities=19%  Similarity=0.362  Sum_probs=59.6

Q ss_pred             eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcc
Q psy8729          28 GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI  107 (190)
Q Consensus        28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~  107 (190)
                      .++..+++..+     +++ ++|.||++||++|+.+.|.++++++.+...  ++.+..++++.                 
T Consensus         5 ~l~~~~f~~~~-----~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~-----------------   59 (101)
T cd02994           5 ELTDSNWTLVL-----EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL--GINVAKVDVTQ-----------------   59 (101)
T ss_pred             EcChhhHHHHh-----CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC--CeEEEEEEccC-----------------
Confidence            34445554332     344 679999999999999999999999876532  47777777764                 


Q ss_pred             cCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         108 PYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                            ...++++|++.++|++++  + ++|+
T Consensus        60 ------~~~~~~~~~i~~~Pt~~~--~-~~g~   82 (101)
T cd02994          60 ------EPGLSGRFFVTALPTIYH--A-KDGV   82 (101)
T ss_pred             ------CHhHHHHcCCcccCEEEE--e-CCCC
Confidence                  346789999999999999  7 6783

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.46  E-value=4e-13  Score=92.64  Aligned_cols=67  Identities=30%  Similarity=0.584  Sum_probs=57.5

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+++++|+||++||++|+.+.|.++++++++.+   ++.+..++++..                       ..+++.|++
T Consensus        20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~~~~-----------------------~~~~~~~~v   73 (109)
T PRK09381         20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQN-----------------------PGTAPKYGI   73 (109)
T ss_pred             CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEECCCC-----------------------hhHHHhCCC
Confidence            577899999999999999999999999999864   378888887753                       456789999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++|++++  + ++|+
T Consensus        74 ~~~Pt~~~--~-~~G~   86 (109)
T PRK09381         74 RGIPTLLL--F-KNGE   86 (109)
T ss_pred             CcCCEEEE--E-eCCe
Confidence            99999999  8 5783

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.45  E-value=4.1e-13  Score=91.43  Aligned_cols=71  Identities=28%  Similarity=0.543  Sum_probs=57.2

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|.||++||++|+.+.|.++++++.+.+. ..+.++.++++.+.                     ...+++.|++
T Consensus        16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~---------------------~~~~~~~~~i   73 (104)
T cd02997          16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED-GKGVLAAVDCTKPE---------------------HDALKEEYNV   73 (104)
T ss_pred             hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC-CceEEEEEECCCCc---------------------cHHHHHhCCC
Confidence            5679999999999999999999999999998754 24666666665422                     4678899999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++|++++  + ++|+
T Consensus        74 ~~~Pt~~~--~-~~g~   86 (104)
T cd02997          74 KGFPTFKY--F-ENGK   86 (104)
T ss_pred             ccccEEEE--E-eCCC
Confidence            99999888  6 4663

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.45  E-value=4.2e-13  Score=92.83  Aligned_cols=93  Identities=24%  Similarity=0.455  Sum_probs=63.1

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++++||++||++|+.+.+.+....+-...-..++.++.++++.+......+.+..+.   ........++.+.||
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~   79 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYG   79 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcC
Confidence            37899999999999999999999987643321111124788888887666555555553332   222233568999999


Q ss_pred             CCCCCeeeeeeecCCCce
Q psy8729         123 VHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~~  140 (190)
                      +.++|++++  +|++|++
T Consensus        80 v~gtPt~~~--~d~~G~~   95 (112)
T PF13098_consen   80 VNGTPTIVF--LDKDGKI   95 (112)
T ss_dssp             --SSSEEEE--CTTTSCE
T ss_pred             CCccCEEEE--EcCCCCE
Confidence            999999999  9999953

...

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.44  E-value=5.9e-13  Score=97.13  Aligned_cols=67  Identities=24%  Similarity=0.469  Sum_probs=56.7

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+++++|+||++||++|+.+.|.++++++++.+.  ++.++.|++|..                       ..++++|+|
T Consensus        46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~--~v~f~~VDvd~~-----------------------~~la~~~~V  100 (152)
T cd02962          46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN--NLKFGKIDIGRF-----------------------PNVAEKFRV  100 (152)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CeEEEEEECCCC-----------------------HHHHHHcCc
Confidence            4678999999999999999999999999998643  588999988863                       466778888


Q ss_pred             CC------CCeeeeeeecCCC
Q psy8729         124 HG------IPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~------~P~~~l~~id~~g  138 (190)
                      .+      +||+++  +. +|
T Consensus       101 ~~~~~v~~~PT~il--f~-~G  118 (152)
T cd02962         101 STSPLSKQLPTIIL--FQ-GG  118 (152)
T ss_pred             eecCCcCCCCEEEE--EE-CC
Confidence            77      999999  74 67

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.44  E-value=4.7e-13  Score=90.71  Aligned_cols=69  Identities=28%  Similarity=0.511  Sum_probs=58.7

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|.||++||++|+.+.+.++++++.+.+.+ ++.+..++++.                       ...++++|++
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~-----------------------~~~~~~~~~i   67 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATA-----------------------EKDLASRFGV   67 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccc-----------------------hHHHHHhCCC
Confidence            68899999999999999999999999999987642 47776666653                       4678899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  +++++
T Consensus        68 ~~~P~~~~--~~~~~   80 (102)
T TIGR01126        68 SGFPTIKF--FPKGK   80 (102)
T ss_pred             CcCCEEEE--ecCCC
Confidence            99999999  88777

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PRK10996 thioredoxin 2; Provisional

Probab=99.43  E-value=7.7e-13  Score=95.38  Aligned_cols=67  Identities=19%  Similarity=0.561  Sum_probs=57.1

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.+.++++++.+   ++.++.++.+.                       ...++++|+
T Consensus        50 ~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~-----------------------~~~l~~~~~  103 (139)
T PRK10996         50 QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNTEA-----------------------ERELSARFR  103 (139)
T ss_pred             hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeCCC-----------------------CHHHHHhcC
Confidence            4689999999999999999999999999988764   37777777654                       357899999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      |.++|++++  ++ +|
T Consensus       104 V~~~Ptlii--~~-~G  116 (139)
T PRK10996        104 IRSIPTIMI--FK-NG  116 (139)
T ss_pred             CCccCEEEE--EE-CC
Confidence            999999999  75 78

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.43  E-value=8.6e-13  Score=94.74  Aligned_cols=67  Identities=12%  Similarity=0.252  Sum_probs=57.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ..+++||+|||+||++|+.+.|.|.++++++++.   +.++.|++|.                       .+.+...|+|
T Consensus        22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe-----------------------~~dla~~y~I   75 (142)
T PLN00410         22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITE-----------------------VPDFNTMYEL   75 (142)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCC-----------------------CHHHHHHcCc
Confidence            6889999999999999999999999999998654   7778888885                       4688999999


Q ss_pred             CCCCeee-eeeecCCCc
Q psy8729         124 HGIPSLI-LLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~-l~~id~~g~  139 (190)
                      .+.|+++ +  + ++|.
T Consensus        76 ~~~~t~~~f--f-k~g~   89 (142)
T PLN00410         76 YDPCTVMFF--F-RNKH   89 (142)
T ss_pred             cCCCcEEEE--E-ECCe
Confidence            9777666 5  4 6773

>TIGR02740 TraF-like TraF-like protein

Probab=99.43  E-value=7.1e-13  Score=105.53  Aligned_cols=76  Identities=21%  Similarity=0.350  Sum_probs=61.7

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .++++||+||++||++|+.+.|.|+++++++.     +.+++|++|....           ..+|.. +.+..+.+.|||
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~-----------~~fp~~-~~d~~la~~~gV  227 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPL-----------PGFPNA-RPDAGQAQQLKI  227 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCcc-----------ccCCcc-cCCHHHHHHcCC
Confidence            68899999999999999999999999999873     7799999986542           123333 224567899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  ++++|
T Consensus       228 ~~vPtl~L--v~~~~  240 (271)
T TIGR02740       228 RTVPAVFL--ADPDP  240 (271)
T ss_pred             CcCCeEEE--EECCC
Confidence            99999999  99843

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.42  E-value=1e-12  Score=89.06  Aligned_cols=79  Identities=30%  Similarity=0.637  Sum_probs=63.4

Q ss_pred             ccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCccc
Q psy8729          29 LAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP  108 (190)
Q Consensus        29 l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~  108 (190)
                      +++.+++..+.+   ++++++|+||++||++|+.+.|.+.++++++.+   ++.++.|+.+.                  
T Consensus         4 lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~------------------   59 (103)
T PF00085_consen    4 LTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDE------------------   59 (103)
T ss_dssp             ESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTT------------------
T ss_pred             CCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhc------------------
Confidence            455555444442   378999999999999999999999999999875   37777777764                  


Q ss_pred             CCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         109 YASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       109 ~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                           ...++++|++.++|++++  +..++
T Consensus        60 -----~~~l~~~~~v~~~Pt~~~--~~~g~   82 (103)
T PF00085_consen   60 -----NKELCKKYGVKSVPTIIF--FKNGK   82 (103)
T ss_dssp             -----SHHHHHHTTCSSSSEEEE--EETTE
T ss_pred             -----cchhhhccCCCCCCEEEE--EECCc
Confidence                 368899999999999999  85443

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PTZ00051 thioredoxin; Provisional

Probab=99.41  E-value=1.3e-12  Score=88.30  Aligned_cols=68  Identities=22%  Similarity=0.486  Sum_probs=55.8

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      ..+++++|.||++||++|+.+.|.+.++++++.    ++.++.++.+.                       ...++++|+
T Consensus        16 ~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~-----------------------~~~~~~~~~   68 (98)
T PTZ00051         16 SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDE-----------------------LSEVAEKEN   68 (98)
T ss_pred             hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcc-----------------------hHHHHHHCC
Confidence            468899999999999999999999999988753    36677776653                       357899999


Q ss_pred             CCCCCeeeeeeecCCCce
Q psy8729         123 VHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~~  140 (190)
                      +.++|++++  + ++|+.
T Consensus        69 v~~~Pt~~~--~-~~g~~   83 (98)
T PTZ00051         69 ITSMPTFKV--F-KNGSV   83 (98)
T ss_pred             CceeeEEEE--E-eCCeE
Confidence            999999888  6 57743

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.41  E-value=1.4e-12  Score=88.75  Aligned_cols=70  Identities=26%  Similarity=0.477  Sum_probs=57.8

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+++++|.||++||++|+.+.|.+.++++.+... .++.+..++.+..                      ...++++|++
T Consensus        17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~----------------------~~~~~~~~~i   73 (105)
T cd02998          17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEA----------------------NKDLAKKYGV   73 (105)
T ss_pred             CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCc----------------------chhhHHhCCC
Confidence            4668999999999999999999999999998733 3577777776541                      2578999999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  ++++|
T Consensus        74 ~~~P~~~~--~~~~~   86 (105)
T cd02998          74 SGFPTLKF--FPKGS   86 (105)
T ss_pred             CCcCEEEE--EeCCC
Confidence            99999999  87765

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.40  E-value=2.8e-12  Score=87.24  Aligned_cols=66  Identities=35%  Similarity=0.552  Sum_probs=55.9

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+++++|.||++||++|+.+.|.+.++++++++.   +.+..++++.                       ...++++|++
T Consensus        17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~-----------------------~~~~~~~~~i   70 (103)
T cd03001          17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADV-----------------------HQSLAQQYGV   70 (103)
T ss_pred             CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcc-----------------------hHHHHHHCCC
Confidence            4667999999999999999999999999988653   7777777664                       4578899999


Q ss_pred             CCCCeeeeeeecCC
Q psy8729         124 HGIPSLILLAVEAG  137 (190)
Q Consensus       124 ~~~P~~~l~~id~~  137 (190)
                      .++|++++  ++++
T Consensus        71 ~~~P~~~~--~~~~   82 (103)
T cd03001          71 RGFPTIKV--FGAG   82 (103)
T ss_pred             CccCEEEE--ECCC
Confidence            99999999  8654

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.39  E-value=1.7e-12  Score=88.36  Aligned_cols=81  Identities=28%  Similarity=0.449  Sum_probs=60.6

Q ss_pred             eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcc
Q psy8729          28 GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI  107 (190)
Q Consensus        28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~  107 (190)
                      .+++.+++..+.   ..++.++|+||++||++|+.+.|.+.++++.+.+. .++.+..++++.                 
T Consensus         4 ~l~~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~-----------------   62 (104)
T cd02995           4 VVVGKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATA-----------------   62 (104)
T ss_pred             EEchhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcc-----------------
Confidence            344444433333   24688999999999999999999999999998763 357777777663                 


Q ss_pred             cCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         108 PYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                             ..++..+++.++|++++  +.+++
T Consensus        63 -------~~~~~~~~~~~~Pt~~~--~~~~~   84 (104)
T cd02995          63 -------NDVPSEFVVDGFPTILF--FPAGD   84 (104)
T ss_pred             -------hhhhhhccCCCCCEEEE--EcCCC
Confidence                   24567789999999999  75444

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.39  E-value=2.5e-12  Score=86.94  Aligned_cols=66  Identities=18%  Similarity=0.419  Sum_probs=56.8

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+++++|+||++||+.|+.+.|.+.++.+++.+   ++.++.++.+.                       ..++.+.+++
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~d~-----------------------~~~l~~~~~v   65 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDIDE-----------------------DQEIAEAAGI   65 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEECCC-----------------------CHHHHHHCCC
Confidence            688999999999999999999999999988864   37777777764                       3577889999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  ++ +|
T Consensus        66 ~~vPt~~i--~~-~g   77 (97)
T cd02949          66 MGTPTVQF--FK-DK   77 (97)
T ss_pred             eeccEEEE--EE-CC
Confidence            99999999  85 67

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.38  E-value=1.6e-12  Score=89.49  Aligned_cols=66  Identities=20%  Similarity=0.268  Sum_probs=57.5

Q ss_pred             CCcEEEEEEEcCC--ChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHc
Q psy8729          44 SCQVIGLYFSAHW--CPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLY  121 (190)
Q Consensus        44 ~~k~vlv~F~a~w--C~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (190)
                      .+.+++|.||++|  ||+|+.+.|.|.+++++|++.   +.++.++.|+                       .+.++.+|
T Consensus        26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~-----------------------~~~la~~f   79 (111)
T cd02965          26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRAD-----------------------EQALAARF   79 (111)
T ss_pred             CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCC-----------------------CHHHHHHc
Confidence            5678899999997  999999999999999999764   7777787775                       35889999


Q ss_pred             CCCCCCeeeeeeecCCC
Q psy8729         122 NVHGIPSLILLAVEAGG  138 (190)
Q Consensus       122 ~v~~~P~~~l~~id~~g  138 (190)
                      +|.++||+++  + ++|
T Consensus        80 ~V~sIPTli~--f-kdG   93 (111)
T cd02965          80 GVLRTPALLF--F-RDG   93 (111)
T ss_pred             CCCcCCEEEE--E-ECC
Confidence            9999999999  7 577

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.38  E-value=1.5e-12  Score=91.31  Aligned_cols=85  Identities=15%  Similarity=0.094  Sum_probs=65.7

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChh--hh--hhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPP--CK--AFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS  100 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~--C~--~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~  100 (190)
                      ..+.+++.+|+..+.+   +..++|++||++||++  |+  ...|.+.+++.++-+. .++.+..|++|.          
T Consensus        10 ~v~~lt~~nF~~~v~~---~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~-~~v~~~kVD~d~----------   75 (120)
T cd03065          10 RVIDLNEKNYKQVLKK---YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED-KGIGFGLVDSKK----------   75 (120)
T ss_pred             ceeeCChhhHHHHHHh---CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc-CCCEEEEEeCCC----------
Confidence            3455677777666553   5668999999999976  99  7788888888887433 248888888875          


Q ss_pred             CCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         101 GMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                                   +..++++|||.++||+++  + ++|+
T Consensus        76 -------------~~~La~~~~I~~iPTl~l--f-k~G~   98 (120)
T cd03065          76 -------------DAKVAKKLGLDEEDSIYV--F-KDDE   98 (120)
T ss_pred             -------------CHHHHHHcCCccccEEEE--E-ECCE
Confidence                         468999999999999999  7 5783

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.37  E-value=1.2e-12  Score=91.70  Aligned_cols=71  Identities=21%  Similarity=0.535  Sum_probs=52.0

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.+.+........   ..++.+.+|.+.                      ....+.|+
T Consensus        17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~----------------------~~~~~~~~   71 (117)
T cd02959          17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDE----------------------EPKDEEFS   71 (117)
T ss_pred             HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCC----------------------Cchhhhcc
Confidence            47899999999999999999999998876654322   234555655432                      12234677


Q ss_pred             CCC--CCeeeeeeecCCCce
Q psy8729         123 VHG--IPSLILLAVEAGGRL  140 (190)
Q Consensus       123 v~~--~P~~~l~~id~~g~~  140 (190)
                      +.+  +|++++  ++++|++
T Consensus        72 ~~g~~vPt~~f--~~~~Gk~   89 (117)
T cd02959          72 PDGGYIPRILF--LDPSGDV   89 (117)
T ss_pred             cCCCccceEEE--ECCCCCC
Confidence            765  999999  9999943

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.37  E-value=4.9e-12  Score=95.06  Aligned_cols=83  Identities=13%  Similarity=0.111  Sum_probs=66.3

Q ss_pred             cccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHHHH
Q psy8729          23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSESSY   95 (190)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~~~   95 (190)
                      ..+++++.+.+|....++.+ .||++||.|||+||+.|+ .++.|++++++|.++|  +.+++++++       .+.+++
T Consensus         4 ~~~~f~~~~~~G~~v~Ls~~-~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei   79 (183)
T PRK10606          4 SILTTVVTTIDGEVTTLEKY-AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEI   79 (183)
T ss_pred             CccCcEeECCCCCEEeHHHh-CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHH
Confidence            35667777777766666666 789999999999999996 6999999999998764  999999885       366889


Q ss_pred             HHHHh-CCCCCcccCC
Q psy8729          96 QSYLS-GMPWPAIPYA  110 (190)
Q Consensus        96 ~~~~~-~~~~~~~~~~  110 (190)
                      +.|.+ +++. .+|+.
T Consensus        80 ~~f~~~~~g~-~Fpv~   94 (183)
T PRK10606         80 KTYCRTTWGV-TFPMF   94 (183)
T ss_pred             HHHHHHccCC-CceeE
Confidence            99997 6664 35555

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.36  E-value=5.3e-12  Score=92.67  Aligned_cols=117  Identities=18%  Similarity=0.255  Sum_probs=88.3

Q ss_pred             CcccceeccCCC---ccceeeeeccCCcEEEEEE-EcCCChhhhhh-hHHHHHHHHHHhhcCCcE-EEEEeeCCCCHHHH
Q psy8729          22 KKTYNIGLAEGT---VTTKVLSYIESCQVIGLYF-SAHWCPPCKAF-TPQLIETYRKLKEDGYQF-EIIFVSSDRSESSY   95 (190)
Q Consensus        22 ~~~~~~~l~~~~---~~~~~~~~~~~~k~vlv~F-~a~wC~~C~~~-~~~l~~l~~~~~~~g~~~-~ii~i~~d~~~~~~   95 (190)
                      ...|+|.+.+..   +....++.+..+++++|+| .+.|||.|..+ ++.+++.++++.+.|  . .+++||.| +.+..
T Consensus         3 ~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D-~~~~~   79 (155)
T cd03013           3 DKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVN-DPFVM   79 (155)
T ss_pred             CcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECC-CHHHH
Confidence            457788887653   5555555522455555554 49999999999 999999999998774  6 59999988 56678


Q ss_pred             HHHHhCCCC-CcccCCchhHHHHHHHcCCCC-----------CCeeeeeeecCCCceEEEc
Q psy8729          96 QSYLSGMPW-PAIPYASETRQSLASLYNVHG-----------IPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~-----------~P~~~l~~id~~g~~~i~~  144 (190)
                      ++|.++++. ..++++.|.+..+++.||+..           ...+++  || +|+++.+.
T Consensus        80 ~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fi--Id-~g~I~~~~  137 (155)
T cd03013          80 KAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALI--VD-DGKVKYLF  137 (155)
T ss_pred             HHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEE--EC-CCEEEEEE
Confidence            889998887 478999999999999999831           245678  98 69554433

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.36  E-value=3.5e-12  Score=88.72  Aligned_cols=63  Identities=17%  Similarity=0.342  Sum_probs=53.3

Q ss_pred             CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729          45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH  124 (190)
Q Consensus        45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  124 (190)
                      +++++|+||++||++|+.+.|.+.+++++++    ++.++.|+.+.                       . .++++|++.
T Consensus        24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~----~v~f~~vd~~~-----------------------~-~l~~~~~i~   75 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP----ETKFVKINAEK-----------------------A-FLVNYLDIK   75 (113)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CcEEEEEEchh-----------------------h-HHHHhcCCC
Confidence            4899999999999999999999999999874    25666666552                       3 788999999


Q ss_pred             CCCeeeeeeecCCC
Q psy8729         125 GIPSLILLAVEAGG  138 (190)
Q Consensus       125 ~~P~~~l~~id~~g  138 (190)
                      ++|++++  + ++|
T Consensus        76 ~~Pt~~~--f-~~G   86 (113)
T cd02957          76 VLPTLLV--Y-KNG   86 (113)
T ss_pred             cCCEEEE--E-ECC
Confidence            9999999  7 467

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.35  E-value=3.1e-12  Score=89.43  Aligned_cols=74  Identities=19%  Similarity=0.413  Sum_probs=59.8

Q ss_pred             CCcEEEEEEEc-------CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHH
Q psy8729          44 SCQVIGLYFSA-------HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQS  116 (190)
Q Consensus        44 ~~k~vlv~F~a-------~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (190)
                      ++++++|+|||       +||++|+.+.|.+.++.+++++   ++.++.|++|...                ...+....
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~~~----------------~w~d~~~~   80 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGDRP----------------YWRDPNNP   80 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCCcc----------------cccCcchh
Confidence            47899999999       9999999999999999998863   3778888887432                22233578


Q ss_pred             HHHHcCCC-CCCeeeeeeecCCC
Q psy8729         117 LASLYNVH-GIPSLILLAVEAGG  138 (190)
Q Consensus       117 ~~~~~~v~-~~P~~~l~~id~~g  138 (190)
                      +.+.|++. ++||+++  ++..+
T Consensus        81 ~~~~~~I~~~iPT~~~--~~~~~  101 (119)
T cd02952          81 FRTDPKLTTGVPTLLR--WKTPQ  101 (119)
T ss_pred             hHhccCcccCCCEEEE--EcCCc
Confidence            89999998 9999999  86555

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.35  E-value=6.4e-12  Score=84.59  Aligned_cols=65  Identities=15%  Similarity=0.432  Sum_probs=54.5

Q ss_pred             CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729          45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH  124 (190)
Q Consensus        45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  124 (190)
                      +++++|.||++||++|+.+.|.|.++.+++.   .++.++.++.+.                       ...++++|++.
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~---~~i~~~~vd~~~-----------------------~~~~~~~~~i~   67 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF---PSVLFLSIEAEE-----------------------LPEISEKFEIT   67 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC---CceEEEEEcccc-----------------------CHHHHHhcCCc
Confidence            6899999999999999999999999998873   347777765543                       35788999999


Q ss_pred             CCCeeeeeeecCCC
Q psy8729         125 GIPSLILLAVEAGG  138 (190)
Q Consensus       125 ~~P~~~l~~id~~g  138 (190)
                      ++|++++  ++ +|
T Consensus        68 ~~Pt~~~--~~-~g   78 (97)
T cd02984          68 AVPTFVF--FR-NG   78 (97)
T ss_pred             cccEEEE--EE-CC
Confidence            9999999  85 67

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.34  E-value=5.2e-12  Score=97.65  Aligned_cols=85  Identities=20%  Similarity=0.376  Sum_probs=64.7

Q ss_pred             cceeccCCCccceeeeec-cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCC
Q psy8729          25 YNIGLAEGTVTTKVLSYI-ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP  103 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~-~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~  103 (190)
                      ..+.+++.+++..+.... ..+++++|+||++||++|+.+.|.++++++++++.   +.+..++++.             
T Consensus        31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~-------------   94 (224)
T PTZ00443         31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATR-------------   94 (224)
T ss_pred             CcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCcc-------------
Confidence            446667777765443221 13578999999999999999999999999998643   6666665543             


Q ss_pred             CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                                ...++++|+|.++||+++  ++ +|
T Consensus        95 ----------~~~l~~~~~I~~~PTl~~--f~-~G  116 (224)
T PTZ00443         95 ----------ALNLAKRFAIKGYPTLLL--FD-KG  116 (224)
T ss_pred             ----------cHHHHHHcCCCcCCEEEE--EE-CC
Confidence                      357899999999999999  86 67

>TIGR01068 thioredoxin thioredoxin

Probab=99.32  E-value=1.4e-11  Score=83.08  Aligned_cols=66  Identities=29%  Similarity=0.597  Sum_probs=56.2

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .++.++|+||++||++|+.+.+.++++.+++++   ++.++.++.+.                       +..++++|++
T Consensus        13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~-----------------------~~~~~~~~~v   66 (101)
T TIGR01068        13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNVDE-----------------------NPDIAAKYGI   66 (101)
T ss_pred             cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEECCC-----------------------CHHHHHHcCC
Confidence            456899999999999999999999999988864   38888887764                       3467889999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  + ++|
T Consensus        67 ~~~P~~~~--~-~~g   78 (101)
T TIGR01068        67 RSIPTLLL--F-KNG   78 (101)
T ss_pred             CcCCEEEE--E-eCC
Confidence            99999999  8 466

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.31  E-value=8.5e-12  Score=86.81  Aligned_cols=66  Identities=21%  Similarity=0.255  Sum_probs=56.4

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.|.+++++++    ++.++.|+.+.                       ...+.++|+
T Consensus        20 ~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~----~i~f~~Vd~~~-----------------------~~~l~~~~~   72 (113)
T cd02989          20 KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL----ETKFIKVNAEK-----------------------APFLVEKLN   72 (113)
T ss_pred             hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC----CCEEEEEEccc-----------------------CHHHHHHCC
Confidence            357889999999999999999999999998874    36788887765                       357899999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      +.++|++++  + ++|
T Consensus        73 v~~vPt~l~--f-k~G   85 (113)
T cd02989          73 IKVLPTVIL--F-KNG   85 (113)
T ss_pred             CccCCEEEE--E-ECC
Confidence            999999999  7 467

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.31  E-value=5.4e-12  Score=84.72  Aligned_cols=70  Identities=29%  Similarity=0.516  Sum_probs=58.4

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|.||++||++|+...+.+.++++.++.. ..+.++.++.+.                       ...+++.|+
T Consensus        13 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~-----------------------~~~~~~~~~   68 (101)
T cd02961          13 KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD-GKVVVAKVDCTA-----------------------NNDLCSEYG   68 (101)
T ss_pred             hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC-CceEEEEeeccc-----------------------hHHHHHhCC
Confidence            35668999999999999999999999999988521 247787777664                       368899999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      +.++|++++  ++++|
T Consensus        69 i~~~Pt~~~--~~~~~   82 (101)
T cd02961          69 VRGYPTIKL--FPNGS   82 (101)
T ss_pred             CCCCCEEEE--EcCCC
Confidence            999999999  98775

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.31  E-value=3e-11  Score=85.24  Aligned_cols=83  Identities=16%  Similarity=0.139  Sum_probs=57.1

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS  119 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (190)
                      .++|+++|+|+++||++|+.+.+..   .++.+.+.+   ++.++.++.+..++..+.+               ......
T Consensus        13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~~---------------~~~~~~   74 (124)
T cd02955          13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKIY---------------MNAAQA   74 (124)
T ss_pred             HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHHH---------------HHHHHH
Confidence            4799999999999999999998733   345555543   3666666665443322222               122333


Q ss_pred             HcCCCCCCeeeeeeecCCCceEEEcccc
Q psy8729         120 LYNVHGIPSLILLAVEAGGRLDVITTEA  147 (190)
Q Consensus       120 ~~~v~~~P~~~l~~id~~g~~~i~~~~~  147 (190)
                      .|++.++|++++  ++++|  +.+...+
T Consensus        75 ~~~~~G~Pt~vf--l~~~G--~~~~~~~   98 (124)
T cd02955          75 MTGQGGWPLNVF--LTPDL--KPFFGGT   98 (124)
T ss_pred             hcCCCCCCEEEE--ECCCC--CEEeeee
Confidence            679999999999  99999  6665443

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.28  E-value=1.8e-11  Score=85.22  Aligned_cols=67  Identities=19%  Similarity=0.328  Sum_probs=55.2

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .+.+.++|+||++||++|+.+.|.+.++.+.+ +   .+.+..++.|.                       ...+.++|+
T Consensus        20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~-----------------------~~~l~~~~~   72 (113)
T cd02975          20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDE-----------------------DKEKAEKYG   72 (113)
T ss_pred             CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCc-----------------------CHHHHHHcC
Confidence            35667889999999999999999999998775 2   37787787774                       357889999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      +.++|++++  ++.++
T Consensus        73 v~~vPt~~i--~~~g~   86 (113)
T cd02975          73 VERVPTTIF--LQDGG   86 (113)
T ss_pred             CCcCCEEEE--EeCCe
Confidence            999999999  86543

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.28  E-value=1.2e-11  Score=104.67  Aligned_cols=85  Identities=15%  Similarity=0.308  Sum_probs=63.0

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      +.|+..+++..+.. ...++++||+||++||++|+.+.|.+.++++++.+.  .+.++.|++|.+.              
T Consensus       354 v~L~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdvD~~~--------------  416 (463)
T TIGR00424       354 VSLSRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRADGDQ--------------  416 (463)
T ss_pred             EECCHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEECCCCc--------------
Confidence            33444444443321 127889999999999999999999999999998764  3778888887533              


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCC
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAG  137 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~  137 (190)
                             ....++.|+|.++||+++  +.++
T Consensus       417 -------~~~~~~~~~I~~~PTii~--Fk~g  438 (463)
T TIGR00424       417 -------KEFAKQELQLGSFPTILF--FPKH  438 (463)
T ss_pred             -------cHHHHHHcCCCccceEEE--EECC
Confidence                   123346899999999999  7544

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.27  E-value=2.6e-11  Score=85.48  Aligned_cols=76  Identities=17%  Similarity=0.443  Sum_probs=52.8

Q ss_pred             ccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCc-hhHHHHHHH
Q psy8729          42 IESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS-ETRQSLASL  120 (190)
Q Consensus        42 ~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  120 (190)
                      +.+++.++|+|+++|||+|+.+.|.|.++.++.     +..+..|++|.+..             ..... ..-.++.+.
T Consensus        20 i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~   81 (122)
T TIGR01295        20 LDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGS-------------FEMSSLNDLTAFRSR   81 (122)
T ss_pred             HHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccC-------------cCcccHHHHHHHHHH
Confidence            347888999999999999999999999998873     25588888874320             00000 002344555


Q ss_pred             c----CCCCCCeeeeeeecCCC
Q psy8729         121 Y----NVHGIPSLILLAVEAGG  138 (190)
Q Consensus       121 ~----~v~~~P~~~l~~id~~g  138 (190)
                      |    ++.++||+++  + ++|
T Consensus        82 ~~i~~~i~~~PT~v~--~-k~G  100 (122)
T TIGR01295        82 FGIPTSFMGTPTFVH--I-TDG  100 (122)
T ss_pred             cCCcccCCCCCEEEE--E-eCC
Confidence            5    4567999999  8 567

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>KOG0190|consensus

Probab=99.26  E-value=1.3e-11  Score=104.23  Aligned_cols=94  Identities=27%  Similarity=0.442  Sum_probs=73.9

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCC
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP  103 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~  103 (190)
                      ...+.|+..++.....    .+..++|.||||||.||+.+.|++++.++.+.+.|..+.+.-|...  .           
T Consensus        25 ~~Vl~Lt~dnf~~~i~----~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat--~-----------   87 (493)
T KOG0190|consen   25 EDVLVLTKDNFKETIN----GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT--E-----------   87 (493)
T ss_pred             cceEEEecccHHHHhc----cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc--h-----------
Confidence            4556777777766665    6788999999999999999999999999999988766777666544  3           


Q ss_pred             CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEcccc
Q psy8729         104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEA  147 (190)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~~  147 (190)
                                ...++.+|+|.++||+.+  + ++|+....+.++
T Consensus        88 ----------~~~~~~~y~v~gyPTlki--F-rnG~~~~~Y~G~  118 (493)
T KOG0190|consen   88 ----------ESDLASKYEVRGYPTLKI--F-RNGRSAQDYNGP  118 (493)
T ss_pred             ----------hhhhHhhhcCCCCCeEEE--E-ecCCcceeccCc
Confidence                      478999999999999999  6 677442334443

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.26  E-value=6.9e-12  Score=106.50  Aligned_cols=69  Identities=29%  Similarity=0.577  Sum_probs=59.4

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|.|||+||++|+.+.|.+.++++.+.+.+.++.+..|+++.                       ...+++.|++
T Consensus        17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~i   73 (462)
T TIGR01130        17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-----------------------EKDLAQKYGV   73 (462)
T ss_pred             cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-----------------------cHHHHHhCCC
Confidence            67889999999999999999999999999988765568888887764                       3578999999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  +. +|
T Consensus        74 ~~~Pt~~~--~~-~g   85 (462)
T TIGR01130        74 SGYPTLKI--FR-NG   85 (462)
T ss_pred             ccccEEEE--Ee-CC
Confidence            99999999  75 45

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.26  E-value=7.5e-11  Score=88.16  Aligned_cols=118  Identities=19%  Similarity=0.347  Sum_probs=90.2

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCCh-hhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC---CHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCP-PCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR---SESSYQ   96 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~---~~~~~~   96 (190)
                      ....+.|+|.+.+|+...++.+ +||+++|.|..+.|| .|...+..|.++.+++.+++.+++++.|++|.   +++.++
T Consensus        29 ~~~~~~f~L~d~~G~~~~~~~~-~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~  107 (174)
T PF02630_consen   29 PRIVPDFTLTDQDGKTVTLDDL-KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK  107 (174)
T ss_dssp             SCSSST-EEEETTSSEEEGGGG-TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH
T ss_pred             CccCCCcEEEcCCCCEecHHHh-CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH
Confidence            3456779999999887777776 899999999999998 79999999999999999876789999999994   468899


Q ss_pred             HHHhCCC--CCcccCCchhHHHHHHHcCCCC----------------CCeeeeeeecCCCceE
Q psy8729          97 SYLSGMP--WPAIPYASETRQSLASLYNVHG----------------IPSLILLAVEAGGRLD  141 (190)
Q Consensus        97 ~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~----------------~P~~~l~~id~~g~~~  141 (190)
                      +|.+.++  |..+....+....+.+.|++..                ...+++  +|++|+++
T Consensus       108 ~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~L--idp~G~i~  168 (174)
T PF02630_consen  108 KYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYL--IDPDGRIR  168 (174)
T ss_dssp             HHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEE--E-TTSEEE
T ss_pred             HHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEE--EcCCCcEE
Confidence            9999775  4444444455677888887542                135677  99999543

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>PTZ00102 disulphide isomerase; Provisional

Probab=99.25  E-value=2.3e-11  Score=104.00  Aligned_cols=82  Identities=22%  Similarity=0.379  Sum_probs=63.7

Q ss_pred             ccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCccc
Q psy8729          29 LAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP  108 (190)
Q Consensus        29 l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~  108 (190)
                      +.+.+++..+.   ..++.++|+|||+||++|+.+.|.++++++.+++. ..+.+..++++.+                 
T Consensus       362 l~~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~v~~~~id~~~~-----------------  420 (477)
T PTZ00102        362 VVGNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-DSIIVAKMNGTAN-----------------  420 (477)
T ss_pred             ecccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CcEEEEEEECCCC-----------------
Confidence            44455554433   36889999999999999999999999999988764 3577777776642                 


Q ss_pred             CCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         109 YASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       109 ~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                            ...++.|++.++|++++  ++++++
T Consensus       421 ------~~~~~~~~v~~~Pt~~~--~~~~~~  443 (477)
T PTZ00102        421 ------ETPLEEFSWSAFPTILF--VKAGER  443 (477)
T ss_pred             ------ccchhcCCCcccCeEEE--EECCCc
Confidence                  34577899999999999  887774

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.23  E-value=4.8e-11  Score=89.25  Aligned_cols=63  Identities=13%  Similarity=0.273  Sum_probs=53.8

Q ss_pred             CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729          45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH  124 (190)
Q Consensus        45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  124 (190)
                      +.++||+||++||++|+.+.|.|..++++|+    .+.++-|+.+.                       . .+...|++.
T Consensus        83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~-----------------------~-~l~~~f~v~  134 (175)
T cd02987          83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASA-----------------------T-GASDEFDTD  134 (175)
T ss_pred             CcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccc-----------------------h-hhHHhCCCC
Confidence            4589999999999999999999999999884    37777777663                       2 678899999


Q ss_pred             CCCeeeeeeecCCC
Q psy8729         125 GIPSLILLAVEAGG  138 (190)
Q Consensus       125 ~~P~~~l~~id~~g  138 (190)
                      ++||+++  + ++|
T Consensus       135 ~vPTlll--y-k~G  145 (175)
T cd02987         135 ALPALLV--Y-KGG  145 (175)
T ss_pred             CCCEEEE--E-ECC
Confidence            9999999  7 567

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.21  E-value=5.1e-11  Score=101.93  Aligned_cols=84  Identities=23%  Similarity=0.444  Sum_probs=65.7

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      ...+++.+++..+    .+++.++|.||++||++|+.+.|.+.++++.+.+.+.++.+..|+++.               
T Consensus        34 v~~l~~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~---------------   94 (477)
T PTZ00102         34 VTVLTDSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE---------------   94 (477)
T ss_pred             cEEcchhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC---------------
Confidence            3445544444433    367889999999999999999999999998887654567777776654               


Q ss_pred             cccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                              ...++++|++.++|++++  ++.++
T Consensus        95 --------~~~l~~~~~i~~~Pt~~~--~~~g~  117 (477)
T PTZ00102         95 --------EMELAQEFGVRGYPTIKF--FNKGN  117 (477)
T ss_pred             --------CHHHHHhcCCCcccEEEE--EECCc
Confidence                    357899999999999999  87655

>KOG0908|consensus

Probab=99.19  E-value=2.7e-11  Score=92.95  Aligned_cols=70  Identities=21%  Similarity=0.449  Sum_probs=57.0

Q ss_pred             CccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCch
Q psy8729          33 TVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASE  112 (190)
Q Consensus        33 ~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~  112 (190)
                      +++..++..  .+|.++|+|+|+||.||+...|.+..++.+|++    ..++-|++|.                      
T Consensus        11 df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~----------------------   62 (288)
T KOG0908|consen   11 DFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDE----------------------   62 (288)
T ss_pred             HHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHH----------------------
Confidence            344444433  788999999999999999999999999999964    5666666653                      


Q ss_pred             hHHHHHHHcCCCCCCeeee
Q psy8729         113 TRQSLASLYNVHGIPSLIL  131 (190)
Q Consensus       113 ~~~~~~~~~~v~~~P~~~l  131 (190)
                       ....+..+||.++||+++
T Consensus        63 -c~~taa~~gV~amPTFif   80 (288)
T KOG0908|consen   63 -CRGTAATNGVNAMPTFIF   80 (288)
T ss_pred             -hhchhhhcCcccCceEEE
Confidence             457788999999999999

>PLN02309 5'-adenylylsulfate reductase

Probab=99.14  E-value=2.3e-10  Score=96.76  Aligned_cols=70  Identities=19%  Similarity=0.361  Sum_probs=57.2

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH-Hc
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS-LY  121 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  121 (190)
                      ..+++++|+||++||++|+.+.|.+.++++++.+.  ++.+..+++|..                      ...++. .|
T Consensus       363 ~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~d~~----------------------~~~la~~~~  418 (457)
T PLN02309        363 NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRADGD----------------------QKEFAKQEL  418 (457)
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEECCCc----------------------chHHHHhhC
Confidence            37889999999999999999999999999998754  488888887722                      235565 69


Q ss_pred             CCCCCCeeeeeeecCCC
Q psy8729         122 NVHGIPSLILLAVEAGG  138 (190)
Q Consensus       122 ~v~~~P~~~l~~id~~g  138 (190)
                      +|.++||+++  +.++.
T Consensus       419 ~I~~~PTil~--f~~g~  433 (457)
T PLN02309        419 QLGSFPTILL--FPKNS  433 (457)
T ss_pred             CCceeeEEEE--EeCCC
Confidence            9999999999  75443

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.14  E-value=2e-10  Score=75.53  Aligned_cols=65  Identities=32%  Similarity=0.600  Sum_probs=54.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+++++|.||++||++|+...+.++++.+. .   .++.++.++.+.                       ...+++.|++
T Consensus         9 ~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~---~~~~~~~i~~~~-----------------------~~~~~~~~~v   61 (93)
T cd02947           9 SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y---PKVKFVKVDVDE-----------------------NPELAEEYGV   61 (93)
T ss_pred             cCCcEEEEEECCCChhHHHhhHHHHHHHHH-C---CCceEEEEECCC-----------------------ChhHHHhcCc
Confidence            458899999999999999999999998887 2   358888888774                       3577889999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  ++ +|
T Consensus        62 ~~~P~~~~--~~-~g   73 (93)
T cd02947          62 RSIPTFLF--FK-NG   73 (93)
T ss_pred             ccccEEEE--EE-CC
Confidence            99999999  75 45

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.12  E-value=2.8e-10  Score=74.15  Aligned_cols=58  Identities=17%  Similarity=0.383  Sum_probs=47.8

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729          48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP  127 (190)
Q Consensus        48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P  127 (190)
                      .+..||++||++|+...|.++++++.+..   .+.++.|+.+.+                       ..+.++||+.++|
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~~~~-----------------------~~~~~~~~v~~vP   55 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINVMEN-----------------------PQKAMEYGIMAVP   55 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeCccC-----------------------HHHHHHcCCccCC
Confidence            46789999999999999999999988854   377788877643                       4567789999999


Q ss_pred             eeee
Q psy8729         128 SLIL  131 (190)
Q Consensus       128 ~~~l  131 (190)
                      ++++
T Consensus        56 t~~~   59 (82)
T TIGR00411        56 AIVI   59 (82)
T ss_pred             EEEE
Confidence            9765

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.07  E-value=3.7e-10  Score=98.66  Aligned_cols=71  Identities=23%  Similarity=0.467  Sum_probs=56.5

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL  120 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (190)
                      ++|+++|+||++||++|+.+.+..   .++.+.++    ++.++.++++++.+                   .+.++.++
T Consensus       473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~-------------------~~~~l~~~  529 (571)
T PRK00293        473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNA-------------------EDVALLKH  529 (571)
T ss_pred             cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCCh-------------------hhHHHHHH
Confidence            589999999999999999998864   55666663    36777777764321                   14688999


Q ss_pred             cCCCCCCeeeeeeecCCCc
Q psy8729         121 YNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       121 ~~v~~~P~~~l~~id~~g~  139 (190)
                      |++.++|++++  +|++|+
T Consensus       530 ~~v~g~Pt~~~--~~~~G~  546 (571)
T PRK00293        530 YNVLGLPTILF--FDAQGQ  546 (571)
T ss_pred             cCCCCCCEEEE--ECCCCC
Confidence            99999999999  999994

>KOG0190|consensus

Probab=99.06  E-value=2.4e-10  Score=96.57  Aligned_cols=89  Identities=22%  Similarity=0.372  Sum_probs=65.7

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCC
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP  103 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~  103 (190)
                      .|...+.+.+++..+.+   .+|-++|.||||||+||+++.|.+++|+++|++. .++.|.-+....++           
T Consensus       366 ~pVkvvVgknfd~iv~d---e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~-~~vviAKmDaTaNd-----------  430 (493)
T KOG0190|consen  366 SPVKVVVGKNFDDIVLD---EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD-ENVVIAKMDATAND-----------  430 (493)
T ss_pred             CCeEEEeecCHHHHhhc---cccceEEEEcCcccchhhhhhhHHHHHHHHhcCC-CCcEEEEecccccc-----------
Confidence            35666777777777765   6788999999999999999999999999999985 45666555544322           


Q ss_pred             CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEE
Q psy8729         104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~  143 (190)
                                    .....+.++||+++  .-.+++.+.+
T Consensus       431 --------------~~~~~~~~fPTI~~--~pag~k~~pv  454 (493)
T KOG0190|consen  431 --------------VPSLKVDGFPTILF--FPAGHKSNPV  454 (493)
T ss_pred             --------------CccccccccceEEE--ecCCCCCCCc
Confidence                          23456777999999  6444433344

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.05  E-value=6.4e-10  Score=84.29  Aligned_cols=62  Identities=16%  Similarity=0.284  Sum_probs=51.4

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++.+|||+||++||++|+.+.|.|.+++++|+    .+.++-|+.+.                          ....|++
T Consensus       101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~----~vkFvkI~ad~--------------------------~~~~~~i  150 (192)
T cd02988         101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFP----DTKFVKIISTQ--------------------------CIPNYPD  150 (192)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHCC----CCEEEEEEhHH--------------------------hHhhCCC
Confidence            35689999999999999999999999999984    36677766541                          1468999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++||+++  + ++|
T Consensus       151 ~~lPTlli--y-k~G  162 (192)
T cd02988         151 KNLPTILV--Y-RNG  162 (192)
T ss_pred             CCCCEEEE--E-ECC
Confidence            99999999  7 577

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PTZ00062 glutaredoxin; Provisional

Probab=99.03  E-value=1.1e-10  Score=88.95  Aligned_cols=100  Identities=9%  Similarity=0.060  Sum_probs=62.9

Q ss_pred             cEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCC
Q psy8729          46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHG  125 (190)
Q Consensus        46 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  125 (190)
                      ..++++|||+||++|+.+.|.|.+++++|+    ++.++.|+.                         +      |+|.+
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~~F~~V~~-------------------------d------~~V~~   62 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SLEFYVVNL-------------------------A------DANNE   62 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHCC----CcEEEEEcc-------------------------c------cCccc
Confidence            567999999999999999999999999985    355655532                         1      89999


Q ss_pred             CCeeeeeeecCCCceEEEcc--ccccccccCCCCCcCCCCcccccccCCCCCCCCCCCCeEEEEE
Q psy8729         126 IPSLILLAVEAGGRLDVITT--EARHELSEDPDGEFFPWPPKLVNVLSPRHCPKLYDSPALILFI  188 (190)
Q Consensus       126 ~P~~~l~~id~~g~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~  188 (190)
                      +|++++  + ++|  +.+.+  ++....+.......+.  ....+.+.++ ++++.+...++|||
T Consensus        63 vPtfv~--~-~~g--~~i~r~~G~~~~~~~~~~~~~~~--~~~~~~~~~~-v~~li~~~~Vvvf~  119 (204)
T PTZ00062         63 YGVFEF--Y-QNS--QLINSLEGCNTSTLVSFIRGWAQ--KGSSEDTVEK-IERLIRNHKILLFM  119 (204)
T ss_pred             ceEEEE--E-ECC--EEEeeeeCCCHHHHHHHHHHHcC--CCCHHHHHHH-HHHHHhcCCEEEEE
Confidence            999999  7 467  33332  2222222211111111  1111223332 44567778888886

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.02  E-value=1.6e-09  Score=68.03  Aligned_cols=57  Identities=16%  Similarity=0.219  Sum_probs=45.9

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729          48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP  127 (190)
Q Consensus        48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P  127 (190)
                      -++.|+++||++|+...+.|+++.+.+    +++.+..++.+.                       ..++.+.||+.++|
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~-----------------------~~~l~~~~~i~~vP   54 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAE-----------------------FPDLADEYGVMSVP   54 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEccc-----------------------CHhHHHHcCCcccC
Confidence            467899999999999999999886653    247777777664                       24678899999999


Q ss_pred             eeee
Q psy8729         128 SLIL  131 (190)
Q Consensus       128 ~~~l  131 (190)
                      ++++
T Consensus        55 ti~i   58 (67)
T cd02973          55 AIVI   58 (67)
T ss_pred             EEEE
Confidence            9877

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.02  E-value=9.5e-10  Score=93.41  Aligned_cols=82  Identities=24%  Similarity=0.419  Sum_probs=61.6

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      ..+...++...+.+   .++.++|+||++||++|+.+.|.+.++++.+.+....+.+..++++.++              
T Consensus       349 ~~l~~~~f~~~v~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--------------  411 (462)
T TIGR01130       349 KVLVGKNFDEIVLD---ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--------------  411 (462)
T ss_pred             EEeeCcCHHHHhcc---CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--------------
Confidence            34455555544432   5889999999999999999999999999999862125888888776422              


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                                +.. +++.++|++++  +.+++
T Consensus       412 ----------~~~-~~i~~~Pt~~~--~~~~~  430 (462)
T TIGR01130       412 ----------VPP-FEVEGFPTIKF--VPAGK  430 (462)
T ss_pred             ----------cCC-CCccccCEEEE--EeCCC
Confidence                      223 89999999999  86655

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=99.00  E-value=7.4e-09  Score=79.43  Aligned_cols=112  Identities=20%  Similarity=0.420  Sum_probs=90.2

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCCh-hhhhhhHHHHHHHHHHh-hcCCcEEEEEeeCCC---CHHHHHHHHh
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCP-PCKAFTPQLIETYRKLK-EDGYQFEIIFVSSDR---SESSYQSYLS  100 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~-~~g~~~~ii~i~~d~---~~~~~~~~~~  100 (190)
                      +|.+.+..|+...+..+ +|++++|+|.-|.|| -|......|.++.+++. ..+.+++++.|++|.   .++.++.|..
T Consensus        49 ~f~l~d~~G~~~~~~~l-~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~  127 (207)
T COG1999          49 DFELTDQDGKPFTLKDL-KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE  127 (207)
T ss_pred             ceeeecCCCCEeecccc-CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence            68888988888888877 899999999999999 69999999999999998 667889999999984   4678888888


Q ss_pred             -CC--CCCcccCCchhHHHHHHHcCCCC--C-------------CeeeeeeecCCCce
Q psy8729         101 -GM--PWPAIPYASETRQSLASLYNVHG--I-------------PSLILLAVEAGGRL  140 (190)
Q Consensus       101 -~~--~~~~~~~~~~~~~~~~~~~~v~~--~-------------P~~~l~~id~~g~~  140 (190)
                       ..  .|.......+...++.++|++..  +             ..+++  +|++|++
T Consensus       128 ~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~l--id~~G~~  183 (207)
T COG1999         128 LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYL--IDADGRF  183 (207)
T ss_pred             ccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEE--ECCCCeE
Confidence             22  25555555666788899998763  2             24466  8888844

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.00  E-value=1.6e-09  Score=73.65  Aligned_cols=64  Identities=11%  Similarity=0.218  Sum_probs=55.6

Q ss_pred             CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729          45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH  124 (190)
Q Consensus        45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  124 (190)
                      ++++++.|+++||++|..+.|.+.+++++++++   +.++.|+.+.                       ...+++.||+.
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~-----------------------~~~~~~~~~i~   65 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADD-----------------------FGRHLEYFGLK   65 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHh-----------------------hHHHHHHcCCC
Confidence            678999999999999999999999999999854   7777777653                       35789999999


Q ss_pred             --CCCeeeeeeecC
Q psy8729         125 --GIPSLILLAVEA  136 (190)
Q Consensus       125 --~~P~~~l~~id~  136 (190)
                        ++|++++  ++.
T Consensus        66 ~~~~P~~~~--~~~   77 (103)
T cd02982          66 EEDLPVIAI--INL   77 (103)
T ss_pred             hhhCCEEEE--Eec
Confidence              9999999  766

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.95  E-value=3.9e-09  Score=68.15  Aligned_cols=54  Identities=13%  Similarity=0.139  Sum_probs=41.9

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      .|.||++||++|+...|.+.++.+++..   .+.++-|  |+                        .....+||+.++|+
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v--~~------------------------~~~a~~~~v~~vPt   52 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKV--TD------------------------MNEILEAGVTATPG   52 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEe--CC------------------------HHHHHHcCCCcCCE
Confidence            3789999999999999999999998753   3555444  32                        12256799999998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        53 i~i   55 (76)
T TIGR00412        53 VAV   55 (76)
T ss_pred             EEE
Confidence            877

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.94  E-value=3.7e-09  Score=73.46  Aligned_cols=81  Identities=15%  Similarity=0.192  Sum_probs=57.4

Q ss_pred             CccceeeeeccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccC
Q psy8729          33 TVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPY  109 (190)
Q Consensus        33 ~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~  109 (190)
                      +++.......+++|+++|+|+++||++|+.+....   .++.+.+.+.   +.++.++.+..+                 
T Consensus         5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~e-----------------   64 (114)
T cd02958           5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSSE-----------------   64 (114)
T ss_pred             CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCcc-----------------
Confidence            34444444555899999999999999999987643   3344445433   555555444212                 


Q ss_pred             CchhHHHHHHHcCCCCCCeeeeeeecC-CCc
Q psy8729         110 ASETRQSLASLYNVHGIPSLILLAVEA-GGR  139 (190)
Q Consensus       110 ~~~~~~~~~~~~~v~~~P~~~l~~id~-~g~  139 (190)
                          ...+...|++.++|++++  +|+ +|+
T Consensus        65 ----~~~~~~~~~~~~~P~~~~--i~~~~g~   89 (114)
T cd02958          65 ----GQRFLQSYKVDKYPHIAI--IDPRTGE   89 (114)
T ss_pred             ----HHHHHHHhCccCCCeEEE--EeCccCc
Confidence                467889999999999999  999 783

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.4e-08  Score=75.69  Aligned_cols=117  Identities=18%  Similarity=0.281  Sum_probs=86.4

Q ss_pred             CcccceeccCC-Cc---cceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCC--HHH
Q psy8729          22 KKTYNIGLAEG-TV---TTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRS--ESS   94 (190)
Q Consensus        22 ~~~~~~~l~~~-~~---~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~--~~~   94 (190)
                      ...|+|+.+.. .+   ....+.+. .++++++.|| +...+-|..++..+++.+.+|.++|  ++++++|+|..  -..
T Consensus         7 ~~aP~F~~~a~~~~~~~~~i~l~d~-~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~fsH~a   83 (194)
T COG0450           7 KKAPDFTANAVLGGEIFEEITLSDY-YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVFSHKA   83 (194)
T ss_pred             CcCCCcEEEEEecCceeeEEechhh-cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHHHHHH
Confidence            34556655443 32   24445444 3499999999 7888999999999999999999985  99999999942  234


Q ss_pred             HHHHHhCC-CC--CcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEE
Q psy8729          95 YQSYLSGM-PW--PAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        95 ~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~  143 (190)
                      |++...+. +.  ..+|+..|.+.++++.||+.      ++=.+++  ||++|+++.+
T Consensus        84 W~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FI--IDp~g~ir~~  139 (194)
T COG0450          84 WKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFI--IDPDGVIRHI  139 (194)
T ss_pred             HHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEE--ECCCCeEEEE
Confidence            55554434 33  67899999999999999985      3446788  9999976544

>KOG1731|consensus

Probab=98.90  E-value=5.9e-10  Score=94.53  Aligned_cols=88  Identities=23%  Similarity=0.347  Sum_probs=71.2

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCC
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP  103 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~  103 (190)
                      .+.+.|...+++..+..   +.+..+|.||++||++|+.+.|.+.++++...++.+-+.+.+|++-++.           
T Consensus        39 D~ii~Ld~~tf~~~v~~---~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-----------  104 (606)
T KOG1731|consen   39 DPIIELDVDTFNAAVFG---SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-----------  104 (606)
T ss_pred             CCeEEeehhhhHHHhcc---cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-----------
Confidence            55566666666655554   3356789999999999999999999999999999777888888775444           


Q ss_pred             CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCC
Q psy8729         104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAG  137 (190)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~  137 (190)
                                +..+|+.|+|..+|++..  +.++
T Consensus       105 ----------N~~lCRef~V~~~Ptlry--f~~~  126 (606)
T KOG1731|consen  105 ----------NVKLCREFSVSGYPTLRY--FPPD  126 (606)
T ss_pred             ----------hhhhHhhcCCCCCceeee--cCCc
Confidence                      789999999999999999  5444

>KOG4277|consensus

Probab=98.88  E-value=2.5e-09  Score=84.53  Aligned_cols=79  Identities=22%  Similarity=0.385  Sum_probs=59.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .....+|+||||||.+|+++.|.+.+..-.+++.|  ..+-.-.+|...                     -+.++..|||
T Consensus        42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig--~PikVGKlDaT~---------------------f~aiAnefgi   98 (468)
T KOG4277|consen   42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIG--LPIKVGKLDATR---------------------FPAIANEFGI   98 (468)
T ss_pred             cCCeEEEEeechhhhhcccccchhHHhCcchhhcC--Cceeeccccccc---------------------chhhHhhhcc
Confidence            45678999999999999999999999988888765  333333344332                     3688999999


Q ss_pred             CCCCeeeeeeecCCCceEEEcccccc
Q psy8729         124 HGIPSLILLAVEAGGRLDVITTEARH  149 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~~~i~~~~~~~  149 (190)
                      +++||+.+  +..+.  .+-+++|+.
T Consensus        99 qGYPTIk~--~kgd~--a~dYRG~R~  120 (468)
T KOG4277|consen   99 QGYPTIKF--FKGDH--AIDYRGGRE  120 (468)
T ss_pred             CCCceEEE--ecCCe--eeecCCCcc
Confidence            99999999  75444  455666553

>PHA02125 thioredoxin-like protein

Probab=98.87  E-value=6.8e-09  Score=66.79  Aligned_cols=51  Identities=25%  Similarity=0.568  Sum_probs=38.9

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.||++||++|+...|.|.++.         +.++-|+.+.                       ...+.++|++.++||
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~-----------------------~~~l~~~~~v~~~PT   49 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDE-----------------------GVELTAKHHIRSLPT   49 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCC-----------------------CHHHHHHcCCceeCe
Confidence            78999999999999999986431         2344444433                       467899999999998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      ++.
T Consensus        50 ~~~   52 (75)
T PHA02125         50 LVN   52 (75)
T ss_pred             EEC
Confidence            653

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.85  E-value=9.7e-09  Score=71.39  Aligned_cols=79  Identities=10%  Similarity=0.103  Sum_probs=53.1

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEc--CCCh---hhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhC
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSA--HWCP---PCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG  101 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a--~wC~---~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~  101 (190)
                      +.|++.+++..+.    +.+.++|.|+|  +||.   +|+.+.|++.+..       ..+.+.-|++++..         
T Consensus         4 v~L~~~nF~~~v~----~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa-------~~v~lakVd~~d~~---------   63 (116)
T cd03007           4 VDLDTVTFYKVIP----KFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT-------DDLLVAEVGIKDYG---------   63 (116)
T ss_pred             eECChhhHHHHHh----cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc-------CceEEEEEeccccc---------
Confidence            5577777776554    67889999999  7777   6666665554322       13556666654210         


Q ss_pred             CCCCcccCCchhHHHHHHHcCCC--CCCeeeeeeecC
Q psy8729         102 MPWPAIPYASETRQSLASLYNVH--GIPSLILLAVEA  136 (190)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~v~--~~P~~~l~~id~  136 (190)
                               ...+..++++|+|.  ++||+.+  +.+
T Consensus        64 ---------~~~~~~L~~~y~I~~~gyPTl~l--F~~   89 (116)
T cd03007          64 ---------EKLNMELGERYKLDKESYPVIYL--FHG   89 (116)
T ss_pred             ---------chhhHHHHHHhCCCcCCCCEEEE--EeC
Confidence                     00147899999999  9999999  643

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.83  E-value=1.8e-08  Score=77.76  Aligned_cols=67  Identities=24%  Similarity=0.330  Sum_probs=52.4

Q ss_pred             CCcEEEEEEEc---CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH
Q psy8729          44 SCQVIGLYFSA---HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL  120 (190)
Q Consensus        44 ~~k~vlv~F~a---~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (190)
                      ++...++.|++   +||++|+.+.|.+.++++++.    ++.+..+++|.+.                     ...+++.
T Consensus        18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~----~~~i~~v~vd~~~---------------------~~~l~~~   72 (215)
T TIGR02187        18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP----KLKLEIYDFDTPE---------------------DKEEAEK   72 (215)
T ss_pred             CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC----CceEEEEecCCcc---------------------cHHHHHH
Confidence            34455666877   999999999999999998873    2555566666433                     4789999


Q ss_pred             cCCCCCCeeeeeeecCCC
Q psy8729         121 YNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       121 ~~v~~~P~~~l~~id~~g  138 (190)
                      |+|.++||+++  ++ +|
T Consensus        73 ~~V~~~Pt~~~--f~-~g   87 (215)
T TIGR02187        73 YGVERVPTTII--LE-EG   87 (215)
T ss_pred             cCCCccCEEEE--Ee-CC
Confidence            99999999999  85 55

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.83  E-value=2.7e-09  Score=75.52  Aligned_cols=77  Identities=14%  Similarity=0.238  Sum_probs=48.4

Q ss_pred             cceeeeeccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCc
Q psy8729          35 TTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS  111 (190)
Q Consensus        35 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~  111 (190)
                      ++.+.....++|+++|+|++.||++|+.+...+   .++.+...+.   +.++.+..|..+.                  
T Consensus        13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~---Fv~V~l~~d~td~------------------   71 (130)
T cd02960          13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQED---FIMLNLVHETTDK------------------   71 (130)
T ss_pred             HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhC---eEEEEEEeccCCC------------------
Confidence            334444445899999999999999999998865   2333443332   5444444442210                  


Q ss_pred             hhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         112 ETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       112 ~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                        +..   ..| .++|++++  +|++|++
T Consensus        72 --~~~---~~g-~~vPtivF--ld~~g~v   92 (130)
T cd02960          72 --NLS---PDG-QYVPRIMF--VDPSLTV   92 (130)
T ss_pred             --CcC---ccC-cccCeEEE--ECCCCCC
Confidence              000   123 47999999  9999944

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>KOG0912|consensus

Probab=98.76  E-value=2.2e-08  Score=79.21  Aligned_cols=71  Identities=21%  Similarity=0.417  Sum_probs=62.5

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ....++|.|||.||+.++.+.|.+.+.+++++.+.++-+++...+|.+.                     ...++.+|.|
T Consensus        12 s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~---------------------e~~ia~ky~I   70 (375)
T KOG0912|consen   12 SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDK---------------------EDDIADKYHI   70 (375)
T ss_pred             cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccch---------------------hhHHhhhhcc
Confidence            5789999999999999999999999999999988777778888888665                     4688999999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      ..+||+-+  + ++|
T Consensus        71 ~KyPTlKv--f-rnG   82 (375)
T KOG0912|consen   71 NKYPTLKV--F-RNG   82 (375)
T ss_pred             ccCceeee--e-ecc
Confidence            99999999  6 566

>KOG0191|consensus

Probab=98.76  E-value=2.6e-08  Score=83.31  Aligned_cols=66  Identities=27%  Similarity=0.513  Sum_probs=55.4

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .++..+|.||++||.+|+.+.|.+.++.+.+++.   +.+  .++|.+.                     ...++++|++
T Consensus        46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~--~~vd~~~---------------------~~~~~~~y~i   99 (383)
T KOG0191|consen   46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKI--GAVDCDE---------------------HKDLCEKYGI   99 (383)
T ss_pred             cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEE--EEeCchh---------------------hHHHHHhcCC
Confidence            6778999999999999999999999999998763   444  4445433                     5799999999


Q ss_pred             CCCCeeeeeeecCC
Q psy8729         124 HGIPSLILLAVEAG  137 (190)
Q Consensus       124 ~~~P~~~l~~id~~  137 (190)
                      .++||+.+  +.++
T Consensus       100 ~gfPtl~~--f~~~  111 (383)
T KOG0191|consen  100 QGFPTLKV--FRPG  111 (383)
T ss_pred             ccCcEEEE--EcCC
Confidence            99999999  7666

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.75  E-value=3.7e-08  Score=76.06  Aligned_cols=65  Identities=17%  Similarity=0.172  Sum_probs=50.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++.++++.||++||++|+...+.++++..+.    +++.+..++.+.                       ...+.++|+|
T Consensus       132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~i~~~~vD~~~-----------------------~~~~~~~~~V  184 (215)
T TIGR02187       132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DKILGEMIEANE-----------------------NPDLAEKYGV  184 (215)
T ss_pred             CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----CceEEEEEeCCC-----------------------CHHHHHHhCC
Confidence            4555677799999999999999988887763    246666666554                       3578889999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  . .+|
T Consensus       185 ~~vPtl~i--~-~~~  196 (215)
T TIGR02187       185 MSVPKIVI--N-KGV  196 (215)
T ss_pred             ccCCEEEE--e-cCC
Confidence            99999988  5 456

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.75  E-value=5.8e-08  Score=64.56  Aligned_cols=61  Identities=11%  Similarity=0.086  Sum_probs=50.2

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+.+.+..|+++||++|....+.++++.+.++    ++.+..++.+.                       ..++++.|+|
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~-----------------------~~e~a~~~~V   63 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGAL-----------------------FQDEVEERGI   63 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHh-----------------------CHHHHHHcCC
Confidence            67777899999999999999999999887753    46777777663                       3567899999


Q ss_pred             CCCCeeee
Q psy8729         124 HGIPSLIL  131 (190)
Q Consensus       124 ~~~P~~~l  131 (190)
                      .++|++++
T Consensus        64 ~~vPt~vi   71 (89)
T cd03026          64 MSVPAIFL   71 (89)
T ss_pred             ccCCEEEE
Confidence            99999965

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>smart00594 UAS UAS domain

Probab=98.74  E-value=3.7e-08  Score=69.35  Aligned_cols=82  Identities=18%  Similarity=0.340  Sum_probs=59.7

Q ss_pred             CCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcc
Q psy8729          31 EGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI  107 (190)
Q Consensus        31 ~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~  107 (190)
                      .++++........++|.++|+|+++||+.|+.+...+   .++.+.+.+   ++.++.++++..+               
T Consensus        13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~e---------------   74 (122)
T smart00594       13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSE---------------   74 (122)
T ss_pred             eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChh---------------
Confidence            3455566555556899999999999999999987754   334444433   2555555544332               


Q ss_pred             cCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         108 PYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                            ...+..+|++.++|++.+  ++++|
T Consensus        75 ------g~~l~~~~~~~~~P~~~~--l~~~~   97 (122)
T smart00594       75 ------GQRVSQFYKLDSFPYVAI--VDPRT   97 (122)
T ss_pred             ------HHHHHHhcCcCCCCEEEE--EecCC
Confidence                  467899999999999999  99886

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.74  E-value=2.1e-08  Score=65.56  Aligned_cols=47  Identities=28%  Similarity=0.603  Sum_probs=34.6

Q ss_pred             eccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCC
Q psy8729          41 YIESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDR   90 (190)
Q Consensus        41 ~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~   90 (190)
                      ...++|+++|+|+++||++|+.+...+   .++.+.+.++   +..+.+..+.
T Consensus        13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~~   62 (82)
T PF13899_consen   13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVDD   62 (82)
T ss_dssp             HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETTT
T ss_pred             HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcCC
Confidence            334799999999999999999998877   3444445543   6666666653

...

>KOG2792|consensus

Probab=98.73  E-value=2.2e-07  Score=72.01  Aligned_cols=120  Identities=18%  Similarity=0.246  Sum_probs=95.2

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCCh-hhhhhhHHHHHHHHHHhhc-CCcEEEEEeeCCC---CHHHHHHHH
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCP-PCKAFTPQLIETYRKLKED-GYQFEIIFVSSDR---SESSYQSYL   99 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~-g~~~~ii~i~~d~---~~~~~~~~~   99 (190)
                      ..|+|.+..|......++ .|++++++|.-|.|| -|..++..|.++.+++.+. |....-++|++|.   +.+.+..|+
T Consensus       120 GpF~L~d~~Gk~~te~df-~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~  198 (280)
T KOG2792|consen  120 GPFSLVDHDGKRVTEKDF-LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYV  198 (280)
T ss_pred             CceEEEecCCCeeccccc-ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHH
Confidence            457788888888888887 899999999999999 6999999999998888765 4445578999986   678899999


Q ss_pred             hCCC--CCcccCCchhHHHHHHHcCCC--CCC-------------eeeeeeecCCCceEEEcccccc
Q psy8729         100 SGMP--WPAIPYASETRQSLASLYNVH--GIP-------------SLILLAVEAGGRLDVITTEARH  149 (190)
Q Consensus       100 ~~~~--~~~~~~~~~~~~~~~~~~~v~--~~P-------------~~~l~~id~~g~~~i~~~~~~~  149 (190)
                      ++..  ...++-+.+.-.++++.|-|.  .-|             .+|+  ||++|  +.+..-|+.
T Consensus       199 ~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYL--idPeg--~Fvd~~GrN  261 (280)
T KOG2792|consen  199 SEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYL--IDPEG--EFVDYYGRN  261 (280)
T ss_pred             HhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEE--ECCCc--ceehhhccc
Confidence            9885  466777777788999999874  213             3456  99999  777665543

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.68  E-value=6.5e-08  Score=74.63  Aligned_cols=76  Identities=26%  Similarity=0.359  Sum_probs=62.1

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ..++-+++|+.+.|+.|+...|.|+.++++|     ++.++.||+|...           ...+|.... +..+.+++|+
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-----g~~v~~vs~DG~~-----------~~~fp~~~~-~~g~~~~l~v  181 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-----GFSVIPVSLDGRP-----------IPSFPNPRP-DPGQAKRLGV  181 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-----CCEEEEEecCCCC-----------CcCCCCCCC-CHHHHHHcCC
Confidence            5778899999999999999999999999998     3889999998532           123333322 5778889999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      ..+|++++  +++++
T Consensus       182 ~~~Pal~L--v~~~~  194 (215)
T PF13728_consen  182 KVTPALFL--VNPNT  194 (215)
T ss_pred             CcCCEEEE--EECCC
Confidence            99999999  99977

>KOG0855|consensus

Probab=98.57  E-value=6.2e-07  Score=65.21  Aligned_cols=103  Identities=19%  Similarity=0.253  Sum_probs=83.6

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      +...|+|+|.|.++....+..+..++++|++|| +...|-|.+..=.+..-|++++..+  ..+++++.|. ....+.|.
T Consensus        66 Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~-s~sqKaF~  142 (211)
T KOG0855|consen   66 GDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDD-SASQKAFA  142 (211)
T ss_pred             CCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCc-hHHHHHhh
Confidence            557799999999988888888877888888888 5667889999888988899988753  8899999884 44577888


Q ss_pred             hCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729         100 SGMPWPAIPYASETRQSLASLYNVHGIP  127 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P  127 (190)
                      .++.+ .+.++.|...++.+.+|+...|
T Consensus       143 sKqnl-PYhLLSDpk~e~ik~lGa~k~p  169 (211)
T KOG0855|consen  143 SKQNL-PYHLLSDPKNEVIKDLGAPKDP  169 (211)
T ss_pred             hhccC-CeeeecCcchhHHHHhCCCCCC
Confidence            77764 4556688889999999998766

>KOG0191|consensus

Probab=98.50  E-value=6.6e-07  Score=74.89  Aligned_cols=107  Identities=25%  Similarity=0.310  Sum_probs=71.1

Q ss_pred             hhhHHHHHhhhCCCCCCCCCcc-c-ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCc
Q psy8729           3 KESDQLYNNLLKPGGSKGAKKT-Y-NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQ   80 (190)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~   80 (190)
                      .+++.+++...+.......... . .+.+...++...+.+   .....+|.||+|||++|+.++|.+.++.+.+.. +..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~---~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~  196 (383)
T KOG0191|consen  121 RNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKD---SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KEN  196 (383)
T ss_pred             ccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhc---cCcceEEEEeccccHHhhhcChHHHHHHHHhcc-Ccc
Confidence            3445555444333333322212 2 344555554444433   356688999999999999999999999998875 235


Q ss_pred             EEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729          81 FEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus        81 ~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                      +.+..++.+.                       ...++..+++..+|++.+  +.++.
T Consensus       197 v~~~~~d~~~-----------------------~~~~~~~~~v~~~Pt~~~--f~~~~  229 (383)
T KOG0191|consen  197 VELGKIDATV-----------------------HKSLASRLEVRGYPTLKL--FPPGE  229 (383)
T ss_pred             eEEEeeccch-----------------------HHHHhhhhcccCCceEEE--ecCCC
Confidence            7776665541                       468899999999999999  65555

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.47  E-value=6.7e-07  Score=60.48  Aligned_cols=62  Identities=34%  Similarity=0.630  Sum_probs=48.3

Q ss_pred             CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC--
Q psy8729          45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN--  122 (190)
Q Consensus        45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  122 (190)
                      ++++++.||++||++|+...|.+.++.+++..   .+.++.++..+.                      ...+...|+  
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~----------------------~~~~~~~~~~~   86 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDE----------------------NPDLAAEFGVA   86 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCC----------------------ChHHHHHHhhh
Confidence            78899999999999999999999999999865   366777776510                      245555666  


Q ss_pred             CCCCCeeee
Q psy8729         123 VHGIPSLIL  131 (190)
Q Consensus       123 v~~~P~~~l  131 (190)
                      +..+|++.+
T Consensus        87 ~~~~p~~~~   95 (127)
T COG0526          87 VRSIPTLLL   95 (127)
T ss_pred             hccCCeEEE
Confidence            777787776

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.47  E-value=6.3e-07  Score=62.52  Aligned_cols=74  Identities=26%  Similarity=0.588  Sum_probs=49.0

Q ss_pred             CCcEEEEEEEc-------CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHH
Q psy8729          44 SCQVIGLYFSA-------HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQS  116 (190)
Q Consensus        44 ~~k~vlv~F~a-------~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (190)
                      ++++++|.|++       +|||.|+...|.+++.....++   +..++.+.+.. ..+|+               +.++.
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~-r~~Wk---------------dp~n~   78 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGD-RPEWK---------------DPNNP   78 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE----HHHHC----------------TTSH
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCC-HHHhC---------------CCCCC
Confidence            66788888886       6999999999999987777544   37777777763 23332               22466


Q ss_pred             HHH--HcCCCCCCeeeeeeecCCC
Q psy8729         117 LAS--LYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       117 ~~~--~~~v~~~P~~~l~~id~~g  138 (190)
                      +.+  .+++.++||++-  ++..+
T Consensus        79 fR~~p~~~l~~IPTLi~--~~~~~  100 (119)
T PF06110_consen   79 FRTDPDLKLKGIPTLIR--WETGE  100 (119)
T ss_dssp             HHH--CC---SSSEEEE--CTSS-
T ss_pred             ceEcceeeeeecceEEE--ECCCC
Confidence            777  699999999999  87665

; PDB: 1V9W_A 1WOU_A.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.46  E-value=4.8e-07  Score=64.29  Aligned_cols=71  Identities=18%  Similarity=0.353  Sum_probs=43.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH---
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL---  120 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  120 (190)
                      ..+..++.|..+||+.|....|.|.++++..+    ++.+-.+..|.+.                       ++..+   
T Consensus        40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~-----------------------el~~~~lt   92 (129)
T PF14595_consen   40 QKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENK-----------------------ELMDQYLT   92 (129)
T ss_dssp             -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHH-----------------------HHTTTTTT
T ss_pred             CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCCh-----------------------hHHHHHHh
Confidence            46667889999999999999999999988753    3666666665433                       22222   


Q ss_pred             cCCCCCCeeeeeeecCCCceEEEcc
Q psy8729         121 YNVHGIPSLILLAVEAGGRLDVITT  145 (190)
Q Consensus       121 ~~v~~~P~~~l~~id~~g~~~i~~~  145 (190)
                      .|..++|++++  +|++|  +.+.+
T Consensus        93 ~g~~~IP~~I~--~d~~~--~~lg~  113 (129)
T PF14595_consen   93 NGGRSIPTFIF--LDKDG--KELGR  113 (129)
T ss_dssp             -SS--SSEEEE--E-TT----EEEE
T ss_pred             CCCeecCEEEE--EcCCC--CEeEE
Confidence            47889999999  99998  55543

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.44  E-value=8.2e-07  Score=69.96  Aligned_cols=76  Identities=20%  Similarity=0.260  Sum_probs=61.9

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ..+.-+++||.+.|+.|..+.|.++.++++|.     +.++.||+|...           ...+|.... +...++++|+
T Consensus       149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-----i~v~~VS~DG~~-----------~p~fp~~~~-d~gqa~~l~v  211 (256)
T TIGR02739       149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-----ISVIPISVDGTL-----------IPGLPNSRS-DSGQAQHLGV  211 (256)
T ss_pred             HhceeEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCC-----------CCCCCCccC-ChHHHHhcCC
Confidence            46688999999999999999999999999983     889999999532           123444322 5677889999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      ..+|++++  ++++.
T Consensus       212 ~~~Pal~L--v~~~t  224 (256)
T TIGR02739       212 KYFPALYL--VNPKS  224 (256)
T ss_pred             ccCceEEE--EECCC
Confidence            99999999  99984

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.43  E-value=1.4e-06  Score=52.35  Aligned_cols=63  Identities=30%  Similarity=0.559  Sum_probs=47.1

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.||++||++|+...+.+.++  ....  .++.+..++.+...+.                    ......+++..+|+
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~P~   56 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL--ALLN--KGVKFEAVDVDEDPAL--------------------EKELKRYGVGGVPT   56 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH--HhhC--CCcEEEEEEcCCChHH--------------------hhHHHhCCCccccE
Confidence            4789999999999999999988  2222  3588888888754421                    11135788999999


Q ss_pred             eeeeeecCC
Q psy8729         129 LILLAVEAG  137 (190)
Q Consensus       129 ~~l~~id~~  137 (190)
                      +++  ++.+
T Consensus        57 ~~~--~~~~   63 (69)
T cd01659          57 LVV--FGPG   63 (69)
T ss_pred             EEE--EeCC
Confidence            999  7654

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>KOG0852|consensus

Probab=98.40  E-value=4.9e-06  Score=61.04  Aligned_cols=112  Identities=20%  Similarity=0.285  Sum_probs=86.6

Q ss_pred             ccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh---CC--
Q psy8729          29 LAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS---GM--  102 (190)
Q Consensus        29 l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~---~~--  102 (190)
                      +-++.+.+..++++ .|+++++.|| ..+.--|..++-.+...+.++++.  +-+++++|+| +......|++   +.  
T Consensus        18 VVdG~f~e~~L~dy-~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~--n~eVig~S~D-S~fshlAW~ntprk~gG   93 (196)
T KOG0852|consen   18 VVDGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL--NTEVLGISTD-SVFSHLAWINTPRKQGG   93 (196)
T ss_pred             EEcCcceEEeehhh-cccEEEEEecCCceeeECchhhhhhhhhHHHHHhc--CCeEEEEecc-chhhhhhHhcCchhhCC
Confidence            34566777777776 7899999988 566668999999999999999986  5999999998 4555556665   22  


Q ss_pred             -CCCcccCCchhHHHHHHHcCCC----C--CCeeeeeeecCCCceEEEccc
Q psy8729         103 -PWPAIPYASETRQSLASLYNVH----G--IPSLILLAVEAGGRLDVITTE  146 (190)
Q Consensus       103 -~~~~~~~~~~~~~~~~~~~~v~----~--~P~~~l~~id~~g~~~i~~~~  146 (190)
                       +-..+|+..|.+.++++.||+-    +  +-.+++  ||++|.++.++.+
T Consensus        94 lg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfI--Id~~gi~R~it~N  142 (196)
T KOG0852|consen   94 LGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFI--IDPDGILRQITIN  142 (196)
T ss_pred             cCccccceeeccchhhHHhcCceecCCCcceeeeEE--EccccceEEeeec
Confidence             3456899999999999999983    3  446788  9999977665544

>KOG3425|consensus

Probab=98.36  E-value=5.1e-07  Score=62.03  Aligned_cols=74  Identities=22%  Similarity=0.442  Sum_probs=57.9

Q ss_pred             cCCcEEEEEEEc--------CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhH
Q psy8729          43 ESCQVIGLYFSA--------HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETR  114 (190)
Q Consensus        43 ~~~k~vlv~F~a--------~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~  114 (190)
                      .+++.++|+|.+        ||||.|....|.+.+..+..++   ++.++.+.+.                ..|+..+.+
T Consensus        23 ~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~VG----------------~rp~Wk~p~   83 (128)
T KOG3425|consen   23 ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYVG----------------NRPYWKDPA   83 (128)
T ss_pred             hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEec----------------CCCcccCCC
Confidence            366668888886        7999999999999887775554   4777777766                345666667


Q ss_pred             HHHHHHcCC-CCCCeeeeeeecCC
Q psy8729         115 QSLASLYNV-HGIPSLILLAVEAG  137 (190)
Q Consensus       115 ~~~~~~~~v-~~~P~~~l~~id~~  137 (190)
                      ..+.+..++ .++||+.-  .++.
T Consensus        84 n~FR~d~~~lt~vPTLlr--w~~~  105 (128)
T KOG3425|consen   84 NPFRKDPGILTAVPTLLR--WKRQ  105 (128)
T ss_pred             CccccCCCceeecceeeE--EcCc
Confidence            888888888 89999999  8743

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.34  E-value=1.8e-06  Score=67.65  Aligned_cols=76  Identities=20%  Similarity=0.188  Sum_probs=60.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ..++-|++||.+.|++|..+.|.|+.+.++|.     +.++.||+|...           .+.+|..-. +....+.+|+
T Consensus       142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-----~~v~~VS~DG~~-----------~p~fp~~~~-d~gqa~~l~v  204 (248)
T PRK13703        142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-----LSVIPVSVDGVI-----------NPLLPDSRT-DQGQAQRLGV  204 (248)
T ss_pred             HhcceEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCC-----------CCCCCCCcc-ChhHHHhcCC
Confidence            45678999999999999999999999999983     889999998532           123444322 4455689999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      ..+|++++  ++++.
T Consensus       205 ~~~PAl~L--v~~~t  217 (248)
T PRK13703        205 KYFPALML--VDPKS  217 (248)
T ss_pred             cccceEEE--EECCC
Confidence            99999999  99975

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.33  E-value=2.4e-06  Score=55.51  Aligned_cols=60  Identities=20%  Similarity=0.418  Sum_probs=42.0

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      |+.|+++|||+|+...+.|.++.  ++.   .+.++-|+.+.+..++                  ...+.+.+|+..+|+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~------------------~~~l~~~~g~~~vP~   57 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEI------------------QDYLEEITGQRTVPN   57 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHH------------------HHHHHHHhCCCCCCe
Confidence            47899999999999999998764  221   2667777665433221                  223566678999999


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        58 v~i   60 (84)
T TIGR02180        58 IFI   60 (84)
T ss_pred             EEE
Confidence            876

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.26  E-value=5.4e-06  Score=52.13  Aligned_cols=55  Identities=18%  Similarity=0.567  Sum_probs=40.2

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      +..|+++||++|+...+.|.+       .  ++.+..++++.+.+.                   ...+.+.+++.++|+
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-------~--~i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP~   53 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-------K--GIAFEEIDVEKDSAA-------------------REEVLKVLGQRGVPV   53 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------C--CCeEEEEeccCCHHH-------------------HHHHHHHhCCCcccE
Confidence            467999999999999887753       2  255666776654421                   245677889999998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        54 ~~~   56 (74)
T TIGR02196        54 IVI   56 (74)
T ss_pred             EEE
Confidence            887

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.21  E-value=3.7e-06  Score=61.71  Aligned_cols=80  Identities=19%  Similarity=0.310  Sum_probs=42.2

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCH-HHHHHHHhCCCCCcccCCchhHHHHH
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSE-SSYQSYLSGMPWPAIPYASETRQSLA  118 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (190)
                      .++|+++|.++.+||..|+.+..+.   .++++.+...     +|.|.+|.++ .++....              .....
T Consensus        35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-----FI~VkvDree~Pdid~~y--------------~~~~~   95 (163)
T PF03190_consen   35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-----FIPVKVDREERPDIDKIY--------------MNAVQ   95 (163)
T ss_dssp             HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH------EEEEEETTT-HHHHHHH--------------HHHHH
T ss_pred             hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-----EEEEEeccccCccHHHHH--------------HHHHH
Confidence            4799999999999999999987632   3344444443     5555555433 1111111              11112


Q ss_pred             HHcCCCCCCeeeeeeecCCCceEEEcc
Q psy8729         119 SLYNVHGIPSLILLAVEAGGRLDVITT  145 (190)
Q Consensus       119 ~~~~v~~~P~~~l~~id~~g~~~i~~~  145 (190)
                      ...|..+.|++++  ++++|  +.+..
T Consensus        96 ~~~~~gGwPl~vf--ltPdg--~p~~~  118 (163)
T PF03190_consen   96 AMSGSGGWPLTVF--LTPDG--KPFFG  118 (163)
T ss_dssp             HHHS---SSEEEE--E-TTS---EEEE
T ss_pred             HhcCCCCCCceEE--ECCCC--Ceeee
Confidence            2237889999999  99999  55543

; PDB: 3IRA_A.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.10  E-value=6.5e-06  Score=70.87  Aligned_cols=71  Identities=17%  Similarity=0.346  Sum_probs=51.9

Q ss_pred             CcEEEEEEEcCCChhhhhhhHHHH-HHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          45 CQVIGLYFSAHWCPPCKAFTPQLI-ETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        45 ~k~vlv~F~a~wC~~C~~~~~~l~-~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      +|+|+|+|||.||-.||...+..- +-....+-  .++.++-++...+..                   .+.++.++|++
T Consensus       474 ~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~--~~~vlLqaDvT~~~p-------------------~~~~lLk~~~~  532 (569)
T COG4232         474 AKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL--QDVVLLQADVTANDP-------------------AITALLKRLGV  532 (569)
T ss_pred             CCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc--CCeEEEEeeecCCCH-------------------HHHHHHHHcCC
Confidence            349999999999999999988552 33233322  246666666543321                   26788999999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      -+.|++++  ++++|
T Consensus       533 ~G~P~~~f--f~~~g  545 (569)
T COG4232         533 FGVPTYLF--FGPQG  545 (569)
T ss_pred             CCCCEEEE--ECCCC
Confidence            99999999  99888

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=9.3e-05  Score=53.17  Aligned_cols=122  Identities=15%  Similarity=0.173  Sum_probs=91.9

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      ..+..+|+|++.+.+.....+..+...+.++..|-+=..+-|......+++.+.++.    +..++.||.| -+....+|
T Consensus        19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~----~~~Vl~IS~D-LPFAq~Rf   93 (158)
T COG2077          19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG----NTVVLCISMD-LPFAQKRF   93 (158)
T ss_pred             ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC----CcEEEEEeCC-ChhHHhhh
Confidence            335678899999888888888776444445555668888999999999998888774    3789999988 67778889


Q ss_pred             HhCCCCCcccCCchh-HHHHHHHcCC--CCCC-------eeeeeeecCCCceEEEcccccc
Q psy8729          99 LSGMPWPAIPYASET-RQSLASLYNV--HGIP-------SLILLAVEAGGRLDVITTEARH  149 (190)
Q Consensus        99 ~~~~~~~~~~~~~~~-~~~~~~~~~v--~~~P-------~~~l~~id~~g~~~i~~~~~~~  149 (190)
                      -...+..++....|. +.++.+.||+  ..-|       ..++  +|.+|  ++.+..-..
T Consensus        94 C~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V--~De~g--~V~y~elv~  150 (158)
T COG2077          94 CGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFV--LDENG--KVTYSELVP  150 (158)
T ss_pred             hhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEE--EcCCC--cEEEEEccc
Confidence            988888776666666 6779999996  3445       5677  99999  666654433

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.05  E-value=2.8e-05  Score=49.46  Aligned_cols=22  Identities=18%  Similarity=0.477  Sum_probs=18.8

Q ss_pred             EEEEEcCCChhhhhhhHHHHHH
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIET   70 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l   70 (190)
                      ++.||++||++|+...+.|.++
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~   23 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL   23 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc
Confidence            5789999999999999988543

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=97.93  E-value=4.2e-05  Score=59.24  Aligned_cols=106  Identities=19%  Similarity=0.338  Sum_probs=73.9

Q ss_pred             ceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEee----CC--------------CCH----H
Q psy8729          36 TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVS----SD--------------RSE----S   93 (190)
Q Consensus        36 ~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~----~d--------------~~~----~   93 (190)
                      ..+.+..+.++++||.|.+-.||+=..-+++++++.++|.+. .++-+|+|.    .|              .+.    .
T Consensus        93 ~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~  171 (237)
T PF00837_consen   93 CRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLR  171 (237)
T ss_pred             eeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCCccCCCCceeecCCCCHHHHHH
Confidence            566777778999999999999999999999999999999875 345565552    11              011    2


Q ss_pred             HHHHHHhCCCCCcccCCchh-HHHHHHHcCCCCCCeeeeeeecCCCceEEEccccccc
Q psy8729          94 SYQSYLSGMPWPAIPYASET-RQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHE  150 (190)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~~~~~  150 (190)
                      .++.+.++.  ...|+..|. ++...++||..-- .+|+  | .+|  ++++.+|.+.
T Consensus       172 aA~~l~~~~--~~~pi~vD~mdN~~~~~YgA~Pe-RlyI--i-~~g--kv~Y~Gg~GP  221 (237)
T PF00837_consen  172 AAKLLKEEF--PQCPIVVDTMDNNFNKAYGALPE-RLYI--I-QDG--KVVYKGGPGP  221 (237)
T ss_pred             HHHHHHhhC--CCCCEEEEccCCHHHHHhCCCcc-eEEE--E-ECC--EEEEeCCCCC
Confidence            233333333  355666665 6788888886532 3455  5 589  8888888764

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.90  E-value=7.9e-05  Score=48.80  Aligned_cols=60  Identities=17%  Similarity=0.296  Sum_probs=41.3

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC--CCCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN--VHGI  126 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~  126 (190)
                      ++.|+.+|||+|++....|+++..++.    ++.+..++++.+..+                   ...+.+.++  +..+
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi~~~~~~-------------------~~el~~~~~~~~~~v   59 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDIHAEGIS-------------------KADLEKTVGKPVETV   59 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEECCCChHH-------------------HHHHHHHHCCCCCcC
Confidence            678899999999999999999887652    255556666543211                   233444444  4789


Q ss_pred             Ceeee
Q psy8729         127 PSLIL  131 (190)
Q Consensus       127 P~~~l  131 (190)
                      |++++
T Consensus        60 P~ifi   64 (85)
T PRK11200         60 PQIFV   64 (85)
T ss_pred             CEEEE
Confidence            99877

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.89  E-value=7.2e-05  Score=45.57  Aligned_cols=55  Identities=27%  Similarity=0.445  Sum_probs=38.2

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|+.+|||+|+.....|.+       .|  +..-.++++.+++.                   ...+.+..|..++|+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~-------~~--i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~~P~   52 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE-------KG--IPYEEVDVDEDEEA-------------------REELKELSGVRTVPQ   52 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-------TT--BEEEEEEGGGSHHH-------------------HHHHHHHHSSSSSSE
T ss_pred             cEEEEcCCCcCHHHHHHHHHH-------cC--CeeeEcccccchhH-------------------HHHHHHHcCCCccCE
Confidence            567899999999999988832       22  44455555543311                   355566669999999


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        53 v~i   55 (60)
T PF00462_consen   53 VFI   55 (60)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            988

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.00017  Score=52.20  Aligned_cols=92  Identities=18%  Similarity=0.367  Sum_probs=59.7

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS  119 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (190)
                      ..+|..++.|-++.|+.|.++-..+   .++++-+.+   ++.++.+....+...  .|...-.     ...-...++++
T Consensus        40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~---hf~~~~l~i~~skpv--~f~~g~k-----ee~~s~~ELa~  109 (182)
T COG2143          40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE---HFSAYYLNISYSKPV--LFKVGDK-----EEKMSTEELAQ  109 (182)
T ss_pred             ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh---CeEEEEEEeccCcce--EeecCce-----eeeecHHHHHH
Confidence            4799999999999999999987766   345555544   377777766543310  0000000     00011468999


Q ss_pred             HcCCCCCCeeeeeeecCCCceEEEcccc
Q psy8729         120 LYNVHGIPSLILLAVEAGGRLDVITTEA  147 (190)
Q Consensus       120 ~~~v~~~P~~~l~~id~~g~~~i~~~~~  147 (190)
                      .|+++++|++++  .|++|+. +....|
T Consensus       110 kf~vrstPtfvF--fdk~Gk~-Il~lPG  134 (182)
T COG2143         110 KFAVRSTPTFVF--FDKTGKT-ILELPG  134 (182)
T ss_pred             HhccccCceEEE--EcCCCCE-EEecCC
Confidence            999999999999  9999833 334444

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.84  E-value=0.00013  Score=46.83  Aligned_cols=50  Identities=26%  Similarity=0.497  Sum_probs=35.8

Q ss_pred             EcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeee
Q psy8729          53 SAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL  131 (190)
Q Consensus        53 ~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l  131 (190)
                      ++++|+.|......++++.+.+.   .+++++-+  .+                       .+.+ ..||+.++|++++
T Consensus         6 ~~~~C~~C~~~~~~~~~~~~~~~---i~~ei~~~--~~-----------------------~~~~-~~ygv~~vPalvI   55 (76)
T PF13192_consen    6 FSPGCPYCPELVQLLKEAAEELG---IEVEIIDI--ED-----------------------FEEI-EKYGVMSVPALVI   55 (76)
T ss_dssp             ECSSCTTHHHHHHHHHHHHHHTT---EEEEEEET--TT-----------------------HHHH-HHTT-SSSSEEEE
T ss_pred             eCCCCCCcHHHHHHHHHHHHhcC---CeEEEEEc--cC-----------------------HHHH-HHcCCCCCCEEEE
Confidence            67889999999999988877763   23444432  21                       2455 8999999999976

...

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.79  E-value=0.00031  Score=53.36  Aligned_cols=86  Identities=22%  Similarity=0.346  Sum_probs=53.2

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC---CH-------------HHHHHHHhCCCC---
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR---SE-------------SSYQSYLSGMPW---  104 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~---~~-------------~~~~~~~~~~~~---  104 (190)
                      .++..++.|..+.||+|+++.+.+.+    .. .+..+.++.+.+..   +.             +.|+++......   
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~-~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~  150 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP----NA-DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP  150 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh----cc-CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence            57889999999999999999999876    12 22345555554432   11             122222222111   


Q ss_pred             -CcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         105 -PAIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       105 -~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                       .......+.+..+++.+|+.++|++++    ++|
T Consensus       151 ~~~~~~~i~~~~~l~~~~gi~gtPtii~----~~G  181 (197)
T cd03020         151 AASCDNPVAANLALGRQLGVNGTPTIVL----ADG  181 (197)
T ss_pred             ccccCchHHHHHHHHHHcCCCcccEEEE----CCC
Confidence             011112334678899999999999987    457

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.76  E-value=9.7e-05  Score=51.50  Aligned_cols=75  Identities=12%  Similarity=0.139  Sum_probs=51.4

Q ss_pred             CccceeeeeccCCcEEEEEEEcC----CChhhhhhhH--HHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          33 TVTTKVLSYIESCQVIGLYFSAH----WCPPCKAFTP--QLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        33 ~~~~~~~~~~~~~k~vlv~F~a~----wC~~C~~~~~--~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      ++.+.+....+++|.++|+++++    ||..|+..+.  .+.++   +..   ++.+++.++...+              
T Consensus         5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~---ln~---~fv~w~~dv~~~e--------------   64 (116)
T cd02991           5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEY---INT---RMLFWACSVAKPE--------------   64 (116)
T ss_pred             cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHH---HHc---CEEEEEEecCChH--------------
Confidence            33344444445899999999999    8889977653  44333   322   3555555555333              


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecC
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEA  136 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~  136 (190)
                             ..+++..+++.++|++.+  ++.
T Consensus        65 -------g~~la~~l~~~~~P~~~~--l~~   85 (116)
T cd02991          65 -------GYRVSQALRERTYPFLAM--IML   85 (116)
T ss_pred             -------HHHHHHHhCCCCCCEEEE--EEe
Confidence                   478899999999999999  844

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.68  E-value=0.00037  Score=55.08  Aligned_cols=90  Identities=21%  Similarity=0.270  Sum_probs=52.7

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC-C-CCHH-------------HHHHHHhCCCCCcc-
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS-D-RSES-------------SYQSYLSGMPWPAI-  107 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~-d-~~~~-------------~~~~~~~~~~~~~~-  107 (190)
                      .++.+++.|.-+.||+|+++.+++..+.+.  ++ ..+.++.+.. . .+..             .+..+...+..... 
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~-V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~  192 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GK-VQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK  192 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc--Cc-eEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence            577889999999999999999998765443  11 2233333221 1 1111             11111111111000 


Q ss_pred             cC---C------chhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         108 PY---A------SETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       108 ~~---~------~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                      +.   .      -+.+.++.+.+|+.++|++++  .|.+|
T Consensus       193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~--~d~~G  230 (251)
T PRK11657        193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYY--MDKDG  230 (251)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEE--ECCCC
Confidence            10   1      122556888999999999999  88888

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.67  E-value=0.00071  Score=52.89  Aligned_cols=87  Identities=14%  Similarity=0.280  Sum_probs=52.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC---C-C------------H-HHHHHHHhCCCCCc
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD---R-S------------E-SSYQSYLSGMPWPA  106 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d---~-~------------~-~~~~~~~~~~~~~~  106 (190)
                      +++.+++.|..+.||+|++..+++.++.+    .|..+.++.....   . .            . +.+...........
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~  181 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP  181 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence            57888999999999999999999876533    3323333322221   1 0            1 11222222221111


Q ss_pred             --ccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         107 --IPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       107 --~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                        .....+.+..+++++|+.++|++++    ++|
T Consensus       182 ~~c~~~v~~~~~la~~lgi~gTPtiv~----~~G  211 (232)
T PRK10877        182 ASCDVDIADHYALGVQFGVQGTPAIVL----SNG  211 (232)
T ss_pred             ccccchHHHhHHHHHHcCCccccEEEE----cCC
Confidence              1112233678899999999999998    578

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.60  E-value=0.00086  Score=43.15  Aligned_cols=58  Identities=21%  Similarity=0.357  Sum_probs=40.2

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|.++|||+|+...+.|.++.-       .+..+-++.+.+.+++                  ...+.+.+|..++|.
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~------------------~~~~~~~~g~~~~P~   56 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEI------------------QDYLQELTGQRTVPN   56 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHH------------------HHHHHHHhCCCCCCe
Confidence            467889999999999999976433       2556666665432211                  234566678999999


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        57 v~~   59 (82)
T cd03419          57 VFI   59 (82)
T ss_pred             EEE
Confidence            866

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=97.54  E-value=0.00061  Score=44.69  Aligned_cols=78  Identities=17%  Similarity=0.240  Sum_probs=46.6

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEee--CCCC-----HHHHHHHHhCC--C--CCcccCCchhHHHH
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVS--SDRS-----ESSYQSYLSGM--P--WPAIPYASETRQSL  117 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~--~d~~-----~~~~~~~~~~~--~--~~~~~~~~~~~~~~  117 (190)
                      +..|+.+.||+|....+.+.++.....+   ++.+....  ....     ....+......  +  +......  .+...
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~   75 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL--ADTAL   75 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH--HHHHH
Confidence            4678999999999999999988744433   35555444  3322     11111111110  0  0000000  35677


Q ss_pred             HHHcCCCCCCeeee
Q psy8729         118 ASLYNVHGIPSLIL  131 (190)
Q Consensus       118 ~~~~~v~~~P~~~l  131 (190)
                      ...+|+.++|++++
T Consensus        76 ~~~~g~~g~Pt~v~   89 (98)
T cd02972          76 ARALGVTGTPTFVV   89 (98)
T ss_pred             HHHcCCCCCCEEEE
Confidence            88999999999999

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>KOG0911|consensus

Probab=97.48  E-value=6.7e-05  Score=57.34  Aligned_cols=61  Identities=15%  Similarity=0.273  Sum_probs=48.9

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      +.+.+++.||++||..|+++...+..+.+.. .   +++++.+..+  .                     ...++..+.+
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~---~~~~~k~~a~--~---------------------~~eis~~~~v   68 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-K---NAQFLKLEAE--E---------------------FPEISNLIAV   68 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-h---hheeeeehhh--h---------------------hhHHHHHHHH
Confidence            6788999999999999999999999988887 2   2455444333  2                     4688889999


Q ss_pred             CCCCeeee
Q psy8729         124 HGIPSLIL  131 (190)
Q Consensus       124 ~~~P~~~l  131 (190)
                      .+.|++.+
T Consensus        69 ~~vp~~~~   76 (227)
T KOG0911|consen   69 EAVPYFVF   76 (227)
T ss_pred             hcCceeee
Confidence            99998888

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=97.47  E-value=0.0011  Score=45.49  Aligned_cols=60  Identities=25%  Similarity=0.243  Sum_probs=50.7

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD   89 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d   89 (190)
                      ++++.+.+|....++.+ +|++++|.=-|+.|+.-. ....|++++++|.++|  +.|+++-++
T Consensus         3 df~~~~~~G~~v~l~~y-~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcn   62 (108)
T PF00255_consen    3 DFSAKDIDGKPVSLSKY-KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCN   62 (108)
T ss_dssp             GSEEEBTTSSEEEGGGG-TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBS
T ss_pred             ceeeeCCCCCEECHHHc-CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehH
Confidence            46667777767777776 899999999999999888 8889999999999875  999999875

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=97.40  E-value=0.00075  Score=41.99  Aligned_cols=55  Identities=24%  Similarity=0.363  Sum_probs=35.5

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|+++||++|......|.+       .+  +.+..++++.+...                   ...+.+..++..+|+
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP~   53 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPEA-------------------LEELKKLNGYRSVPV   53 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHHH-------------------HHHHHHHcCCcccCE
Confidence            567899999999998877754       12  33445555543321                   223444457889998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        54 i~~   56 (73)
T cd02976          54 VVI   56 (73)
T ss_pred             EEE
Confidence            876

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>KOG0914|consensus

Probab=97.40  E-value=0.00074  Score=51.56  Aligned_cols=67  Identities=24%  Similarity=0.399  Sum_probs=50.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      +....+|.||+.|.|.|++..|-+.++..+|...+  +.+=.|++..                       -...+.+|+|
T Consensus       143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGr-----------------------fpd~a~kfri  197 (265)
T KOG0914|consen  143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGR-----------------------FPDVAAKFRI  197 (265)
T ss_pred             CceEEEEEEEeecChhhcccccccHHHHHHhCCCC--Ccccceeecc-----------------------CcChHHheee
Confidence            56678999999999999999999999999998764  4444444432                       1234556655


Q ss_pred             ------CCCCeeeeeeecCCC
Q psy8729         124 ------HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ------~~~P~~~l~~id~~g  138 (190)
                            ..+||+++  + ++|
T Consensus       198 s~s~~srQLPT~il--F-q~g  215 (265)
T KOG0914|consen  198 SLSPGSRQLPTYIL--F-QKG  215 (265)
T ss_pred             ccCcccccCCeEEE--E-ccc
Confidence                  46899999  7 456

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.35  E-value=0.0014  Score=42.27  Aligned_cols=55  Identities=24%  Similarity=0.466  Sum_probs=37.6

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729          48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP  127 (190)
Q Consensus        48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P  127 (190)
                      -|+.|..+||++|++....|.+       .|..+..  ++++.+..                    ...+.+..|...+|
T Consensus         9 ~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~--idi~~~~~--------------------~~~~~~~~g~~~vP   59 (79)
T TIGR02190         9 SVVVFTKPGCPFCAKAKATLKE-------KGYDFEE--IPLGNDAR--------------------GRSLRAVTGATTVP   59 (79)
T ss_pred             CEEEEECCCCHhHHHHHHHHHH-------cCCCcEE--EECCCChH--------------------HHHHHHHHCCCCcC
Confidence            4668899999999999998853       2333444  55554322                    23455567889999


Q ss_pred             eeee
Q psy8729         128 SLIL  131 (190)
Q Consensus       128 ~~~l  131 (190)
                      .+++
T Consensus        60 ~i~i   63 (79)
T TIGR02190        60 QVFI   63 (79)
T ss_pred             eEEE
Confidence            9877

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.0027  Score=45.95  Aligned_cols=73  Identities=19%  Similarity=0.250  Sum_probs=58.1

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHHHHH
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSESSYQ   96 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~~~~   96 (190)
                      .-++++.+.+|....++.+ +|++++|.=.||.|..-. ....|+.|+++|+++|  +.|++.-++       .+.++++
T Consensus         5 ~yd~~~~~~~G~~~~l~~~-~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~   80 (162)
T COG0386           5 IYDFSVKDIDGEPVSLSDY-KGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIA   80 (162)
T ss_pred             cccceeeccCCCCccHHHh-CCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHH
Confidence            4556677777777777776 899999999999998766 5568899999999986  999998875       2567788


Q ss_pred             HHHh
Q psy8729          97 SYLS  100 (190)
Q Consensus        97 ~~~~  100 (190)
                      .|-.
T Consensus        81 ~fC~   84 (162)
T COG0386          81 KFCQ   84 (162)
T ss_pred             HHHH
Confidence            8776

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.31  E-value=0.001  Score=43.65  Aligned_cols=60  Identities=15%  Similarity=0.260  Sum_probs=38.4

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC--CCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV--HGI  126 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~  126 (190)
                      ++.|..+|||+|.+....|.++..++.    .+.+..++++.+...                   ...+.+.+|-  ..+
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~tV   58 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAEGIS-------------------KADLEKTVGKPVETV   58 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCCHHH-------------------HHHHHHHhCCCCCCc
Confidence            567889999999999999987654322    234444555432210                   2345555563  789


Q ss_pred             Ceeee
Q psy8729         127 PSLIL  131 (190)
Q Consensus       127 P~~~l  131 (190)
                      |.+++
T Consensus        59 P~ifi   63 (86)
T TIGR02183        59 PQIFV   63 (86)
T ss_pred             CeEEE
Confidence            99876

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=97.27  E-value=0.0014  Score=42.08  Aligned_cols=55  Identities=18%  Similarity=0.392  Sum_probs=36.2

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|+.+|||+|......|++.       |..+..+  +++.+++.                   ...+.+..|...+|+
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~--di~~~~~~-------------------~~~~~~~~g~~~vP~   52 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK-------GVTFTEI--RVDGDPAL-------------------RDEMMQRSGRRTVPQ   52 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc-------CCCcEEE--EecCCHHH-------------------HHHHHHHhCCCCcCE
Confidence            3568899999999999998642       2234444  44433321                   244555668889999


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        53 i~i   55 (79)
T TIGR02181        53 IFI   55 (79)
T ss_pred             EEE
Confidence            876

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>KOG0854|consensus

Probab=97.26  E-value=0.0039  Score=46.10  Aligned_cols=118  Identities=15%  Similarity=0.227  Sum_probs=79.1

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCC--HHHH--
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRS--ESSY--   95 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~--~~~~--   95 (190)
                      +...|+|......|...+.+.+ .+.+.+++-+ +...|-|..++-.+.+++-+|.++  ++++++.|+|+-  -+.|  
T Consensus         9 gd~~PNfea~Tt~g~i~fhd~~-gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR--nvKlialS~d~vesH~~Wi~   85 (224)
T KOG0854|consen    9 GDTVPNFEADTTVGKIKFHDYL-GDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR--NVKLIALSVDDVESHKDWIK   85 (224)
T ss_pred             cCcCCCccccccccceehhhhc-ccceEEEecCcccCCcchhHHHHHHHhhChhhhhc--CceEEEeehhhHHHHHHHHH
Confidence            4456777765555555555554 4555444322 677899999999999999999987  599999999842  2222  


Q ss_pred             --HHHHhCC-CCCcccCCchhHHHHHHHcCCC--------CCC----eeeeeeecCCCceEEE
Q psy8729          96 --QSYLSGM-PWPAIPYASETRQSLASLYNVH--------GIP----SLILLAVEAGGRLDVI  143 (190)
Q Consensus        96 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~--------~~P----~~~l~~id~~g~~~i~  143 (190)
                        +.|.... +-..+|+..|.+.+++-.|++-        +.|    .+++  ++++.+++..
T Consensus        86 DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfv--i~pdkKirLs  146 (224)
T KOG0854|consen   86 DIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFV--IDPDKKIRLS  146 (224)
T ss_pred             HHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEE--ECCCceEEEE
Confidence              2332221 2256788889888888888752        233    5567  9999976543

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.23  E-value=0.0025  Score=39.32  Aligned_cols=55  Identities=22%  Similarity=0.272  Sum_probs=37.0

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|.++|||+|+.....|.+..         +.+..++++.+.+.                   ...+.+..+...+|+
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P~   53 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGEL-------------------REELKELSGWPTVPQ   53 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence            46788999999999999986532         33445555543321                   245555667788998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        54 ~~~   56 (72)
T cd02066          54 IFI   56 (72)
T ss_pred             EEE
Confidence            866

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.23  E-value=0.0023  Score=40.38  Aligned_cols=55  Identities=15%  Similarity=0.276  Sum_probs=36.0

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC-CCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH-GIP  127 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~P  127 (190)
                      ++.|+.+|||+|......|++       .|  +.+-.++++.+.+.                   ...+.+..|.. .+|
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~~~-------------------~~~~~~~~~~~~~vP   53 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDPAL-------------------REEMINRSGGRRTVP   53 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCHHH-------------------HHHHHHHhCCCCccC
Confidence            467889999999999888864       22  33444555543321                   24455566766 899


Q ss_pred             eeee
Q psy8729         128 SLIL  131 (190)
Q Consensus       128 ~~~l  131 (190)
                      .+++
T Consensus        54 ~v~i   57 (75)
T cd03418          54 QIFI   57 (75)
T ss_pred             EEEE
Confidence            8877

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>KOG1651|consensus

Probab=97.19  E-value=0.0047  Score=45.20  Aligned_cols=75  Identities=20%  Similarity=0.259  Sum_probs=60.7

Q ss_pred             cccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHHHH
Q psy8729          23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSESSY   95 (190)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~~~   95 (190)
                      ...+|+..+.+|+...++.+ +|++++|.=-||.|..-...-..|+.|+++|+++|  +.|++.-+.       .+.+++
T Consensus        13 siydf~~~d~~G~~v~l~~y-rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCNQFg~QEp~~n~Ei   89 (171)
T KOG1651|consen   13 SIYDFSAKDLDGEYVSLSQY-RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCNQFGNQEPGSNEEI   89 (171)
T ss_pred             ceeeeEEecCCCCCccHHHh-CCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccccccCcCCCCcHHH
Confidence            34667777877766666665 89999998899999998878889999999999986  999998874       245777


Q ss_pred             HHHHh
Q psy8729          96 QSYLS  100 (190)
Q Consensus        96 ~~~~~  100 (190)
                      ..++.
T Consensus        90 ~~f~~   94 (171)
T KOG1651|consen   90 LNFVK   94 (171)
T ss_pred             HHHHH
Confidence            78876

>PHA03050 glutaredoxin; Provisional

Probab=97.18  E-value=0.0019  Score=44.36  Aligned_cols=61  Identities=18%  Similarity=0.264  Sum_probs=38.1

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      |+.|..+|||+|++....|.+..-..    ..+.++-|.-..+..+                  ....+.+..|...+|.
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~----~~~~~i~i~~~~~~~~------------------~~~~l~~~tG~~tVP~   72 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKR----GAYEIVDIKEFKPENE------------------LRDYFEQITGGRTVPR   72 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCc----CCcEEEECCCCCCCHH------------------HHHHHHHHcCCCCcCE
Confidence            56789999999999998886532111    1344544442111111                  1345666678889999


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        73 IfI   75 (108)
T PHA03050         73 IFF   75 (108)
T ss_pred             EEE
Confidence            977

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=97.15  E-value=0.0044  Score=41.86  Aligned_cols=58  Identities=17%  Similarity=0.337  Sum_probs=35.7

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|..+|||+|++....|.+.       |..+..  +.+|.+++. .               +....+.+..|...+|.
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~--vdid~~~~~-~---------------~~~~~l~~~tg~~tvP~   64 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAV--HEIDKEPAG-K---------------DIENALSRLGCSPAVPA   64 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-------CCCCEE--EEcCCCccH-H---------------HHHHHHHHhcCCCCcCe
Confidence            5678899999999998877542       223444  444432210 0               01234455557889999


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        65 Vfi   67 (99)
T TIGR02189        65 VFV   67 (99)
T ss_pred             EEE
Confidence            877

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=97.11  E-value=0.0036  Score=39.51  Aligned_cols=55  Identities=18%  Similarity=0.266  Sum_probs=37.6

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|..+|||+|++....|++       .|  +.+-.++++.+.+.                   ...+.+..+-..+|.
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~~-------------------~~el~~~~g~~~vP~   54 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPER-------------------KAELEERTGSSVVPQ   54 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence            456788999999999998864       22  33444555543321                   345666677788999


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        55 v~i   57 (73)
T cd03027          55 IFF   57 (73)
T ss_pred             EEE
Confidence            877

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=97.04  E-value=0.0054  Score=38.57  Aligned_cols=54  Identities=19%  Similarity=0.340  Sum_probs=35.8

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|..+|||+|.+....|++       .|  +.+..++++.+.+                    ...+.+..|...+|.
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP~   53 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDIT--------------------GRSLRAVTGAMTVPQ   53 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCChh--------------------HHHHHHHhCCCCcCe
Confidence            567889999999999888863       22  3334445443321                    234455568889999


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        54 ifi   56 (72)
T cd03029          54 VFI   56 (72)
T ss_pred             EEE
Confidence            866

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.04  E-value=0.0025  Score=45.30  Aligned_cols=55  Identities=13%  Similarity=0.347  Sum_probs=44.5

Q ss_pred             CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeec
Q psy8729          56 WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVE  135 (190)
Q Consensus        56 wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id  135 (190)
                      .+|.+....-.|.+++++|.+.  ++.+..|++|.                       +..++.+|||.++||+++  + 
T Consensus        47 r~~E~~D~avvleELa~e~~~~--~v~~akVDiD~-----------------------~~~LA~~fgV~siPTLl~--F-   98 (132)
T PRK11509         47 RTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQ-----------------------SEAIGDRFGVFRFPATLV--F-   98 (132)
T ss_pred             cCCccccHHHHHHHHHHHhcCC--ceEEEEEECCC-----------------------CHHHHHHcCCccCCEEEE--E-
Confidence            4577778888888899998632  47888888875                       468999999999999999  7 


Q ss_pred             CCC
Q psy8729         136 AGG  138 (190)
Q Consensus       136 ~~g  138 (190)
                      ++|
T Consensus        99 kdG  101 (132)
T PRK11509         99 TGG  101 (132)
T ss_pred             ECC
Confidence            577

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=96.94  E-value=0.002  Score=46.17  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=27.9

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHH
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKL   74 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~   74 (190)
                      .++++++.|+.++||+|+.+.+.+.++..++
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~   34 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED   34 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence            5788999999999999999999999887665

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.86  E-value=0.0045  Score=54.40  Aligned_cols=61  Identities=11%  Similarity=0.123  Sum_probs=45.7

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .++..+-.|.+++||+|......+++++...+    ++..-.|....                       .+++..+|+|
T Consensus       475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~----~i~~~~i~~~~-----------------------~~~~~~~~~v  527 (555)
T TIGR03143       475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP----NVEAEMIDVSH-----------------------FPDLKDEYGI  527 (555)
T ss_pred             CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC----CceEEEEECcc-----------------------cHHHHHhCCc
Confidence            34444566789999999999999988877753    34544454432                       3678889999


Q ss_pred             CCCCeeee
Q psy8729         124 HGIPSLIL  131 (190)
Q Consensus       124 ~~~P~~~l  131 (190)
                      .++|++++
T Consensus       528 ~~vP~~~i  535 (555)
T TIGR03143       528 MSVPAIVV  535 (555)
T ss_pred             eecCEEEE
Confidence            99999998

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK10638 glutaredoxin 3; Provisional

Probab=96.76  E-value=0.0093  Score=38.67  Aligned_cols=55  Identities=16%  Similarity=0.352  Sum_probs=35.9

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|..+|||+|++....|++.       |..+..  ++++.+.+.                   ...+.+..|...+|+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~-------gi~y~~--~dv~~~~~~-------------------~~~l~~~~g~~~vP~   55 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK-------GVSFQE--IPIDGDAAK-------------------REEMIKRSGRTTVPQ   55 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCCcEE--EECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence            4567789999999999988642       223444  455543311                   244556668889998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        56 i~~   58 (83)
T PRK10638         56 IFI   58 (83)
T ss_pred             EEE
Confidence            866

>PRK10329 glutaredoxin-like protein; Provisional

Probab=96.63  E-value=0.013  Score=38.01  Aligned_cols=54  Identities=17%  Similarity=0.330  Sum_probs=34.7

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      +..|..+|||+|......|.+       .|  +.+-.++++.+++.                    ....+..|...+|.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-------~g--I~~~~idi~~~~~~--------------------~~~~~~~g~~~vPv   53 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-------RG--FDFEMINVDRVPEA--------------------AETLRAQGFRQLPV   53 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-------CC--CceEEEECCCCHHH--------------------HHHHHHcCCCCcCE
Confidence            567889999999998888843       34  44444555544321                    12223358889998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        54 v~i   56 (81)
T PRK10329         54 VIA   56 (81)
T ss_pred             EEE
Confidence            866

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=96.60  E-value=0.0094  Score=45.50  Aligned_cols=101  Identities=16%  Similarity=0.291  Sum_probs=74.0

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEE------cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFS------AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS  100 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~------a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~  100 (190)
                      +.+.+..|...+.+.+...+.++|+.+      ..-|+.|.-....++.....+..+  ++.++.|+-. -.+.+..|.+
T Consensus        49 Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r--d~tfa~vSra-P~~~i~afk~  125 (211)
T PF05988_consen   49 YVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR--DTTFAVVSRA-PLEKIEAFKR  125 (211)
T ss_pred             eEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC--CceEEEEeCC-CHHHHHHHHH
Confidence            555666677777777754444555543      356999999999997777777765  5788888754 5678999999


Q ss_pred             CCCCCcccCCchhHHHHHHHcCC-----CCCCeeee
Q psy8729         101 GMPWPAIPYASETRQSLASLYNV-----HGIPSLIL  131 (190)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~v-----~~~P~~~l  131 (190)
                      .+||. +|..+.....+...|++     ...|.+-+
T Consensus       126 rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~sv  160 (211)
T PF05988_consen  126 RMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSV  160 (211)
T ss_pred             hcCCC-ceEEEcCCCcccccccceeccCCCceeEEE
Confidence            99997 77777667778888887     45676655

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=96.59  E-value=0.011  Score=37.13  Aligned_cols=53  Identities=17%  Similarity=0.295  Sum_probs=33.9

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCee
Q psy8729          50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSL  129 (190)
Q Consensus        50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~  129 (190)
                      ..|..++||+|+.....|++       .|  +.+-.++++.+.+.                   ... .+..|...+|.+
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~~~-------------------~~~-~~~~g~~~vP~v   52 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQPEA-------------------IDY-VKAQGFRQVPVI   52 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCHHH-------------------HHH-HHHcCCcccCEE
Confidence            46788999999999998863       23  33444555543321                   122 234588889987


Q ss_pred             ee
Q psy8729         130 IL  131 (190)
Q Consensus       130 ~l  131 (190)
                      ++
T Consensus        53 ~~   54 (72)
T TIGR02194        53 VA   54 (72)
T ss_pred             EE
Confidence            66

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=96.59  E-value=0.0045  Score=49.33  Aligned_cols=64  Identities=14%  Similarity=0.261  Sum_probs=47.7

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++.+|||.||-+.++.|..+-..|..|+++|+.    ++++-|.....                        .+...|..
T Consensus       145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~------------------------~~~~~f~~  196 (265)
T PF02114_consen  145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKC------------------------PASENFPD  196 (265)
T ss_dssp             TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGC------------------------CTTTTS-T
T ss_pred             CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhcc------------------------CcccCCcc
Confidence            466899999999999999999999999999964    67777765421                        13557889


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      ..+|++++  + ++|
T Consensus       197 ~~LPtllv--Y-k~G  208 (265)
T PF02114_consen  197 KNLPTLLV--Y-KNG  208 (265)
T ss_dssp             TC-SEEEE--E-ETT
T ss_pred             cCCCEEEE--E-ECC
Confidence            99999999  6 477

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>KOG1752|consensus

Probab=96.54  E-value=0.021  Score=38.95  Aligned_cols=58  Identities=24%  Similarity=0.442  Sum_probs=35.3

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      +|.|..+||++|......|..    +   +....++-+.-+.+-.+++                  ..+.+.-|...+|.
T Consensus        16 VVifSKs~C~~c~~~k~ll~~----~---~v~~~vvELD~~~~g~eiq------------------~~l~~~tg~~tvP~   70 (104)
T KOG1752|consen   16 VVIFSKSSCPYCHRAKELLSD----L---GVNPKVVELDEDEDGSEIQ------------------KALKKLTGQRTVPN   70 (104)
T ss_pred             EEEEECCcCchHHHHHHHHHh----C---CCCCEEEEccCCCCcHHHH------------------HHHHHhcCCCCCCE
Confidence            467889999999995555543    2   3345565554443332333                  33344446678999


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +|+
T Consensus        71 vFI   73 (104)
T KOG1752|consen   71 VFI   73 (104)
T ss_pred             EEE
Confidence            888

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.016  Score=37.48  Aligned_cols=57  Identities=19%  Similarity=0.321  Sum_probs=36.1

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|..++||+|+.....|.       ..|..++.+-+..+.. ++.+                  ..+.+..|...+|.
T Consensus         3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~-~~~~------------------~~~~~~~g~~tvP~   56 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEP-EEAR------------------EMVKRGKGQRTVPQ   56 (80)
T ss_pred             EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcH-HHHH------------------HHHHHhCCCCCcCE
Confidence            46678899999999988886       3344455555544431 1111                  22233338899999


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        57 I~i   59 (80)
T COG0695          57 IFI   59 (80)
T ss_pred             EEE
Confidence            888

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=96.52  E-value=0.017  Score=38.11  Aligned_cols=49  Identities=22%  Similarity=0.270  Sum_probs=31.3

Q ss_pred             CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeee
Q psy8729          55 HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL  131 (190)
Q Consensus        55 ~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l  131 (190)
                      +|||+|++....|.+.       |..+..  ++++.+.+                   ....+.+..|...+|.+++
T Consensus        21 ~~Cp~C~~ak~~L~~~-------~i~y~~--idv~~~~~-------------------~~~~l~~~~g~~tvP~vfi   69 (90)
T cd03028          21 PRCGFSRKVVQILNQL-------GVDFGT--FDILEDEE-------------------VRQGLKEYSNWPTFPQLYV   69 (90)
T ss_pred             CCCcHHHHHHHHHHHc-------CCCeEE--EEcCCCHH-------------------HHHHHHHHhCCCCCCEEEE
Confidence            6999999998888653       223344  44443321                   1345566668889999866

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=96.51  E-value=0.011  Score=42.91  Aligned_cols=44  Identities=20%  Similarity=0.445  Sum_probs=35.9

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~   88 (190)
                      .++++|+.|+...||+|..+.+.+.++.+++-+.| ++.++...+
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~   54 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV   54 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence            68899999999999999999999999999983332 577777765

...

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=96.48  E-value=0.018  Score=38.68  Aligned_cols=49  Identities=20%  Similarity=0.230  Sum_probs=32.1

Q ss_pred             CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeee
Q psy8729          55 HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL  131 (190)
Q Consensus        55 ~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l  131 (190)
                      +|||+|.+....|.+.       |  +.+..++++.+.+ .                  ...+.+..|...+|.+++
T Consensus        25 ~~Cp~C~~ak~lL~~~-------~--i~~~~~di~~~~~-~------------------~~~l~~~tg~~tvP~vfi   73 (97)
T TIGR00365        25 PQCGFSARAVQILKAC-------G--VPFAYVNVLEDPE-I------------------RQGIKEYSNWPTIPQLYV   73 (97)
T ss_pred             CCCchHHHHHHHHHHc-------C--CCEEEEECCCCHH-H------------------HHHHHHHhCCCCCCEEEE
Confidence            8999999999888652       2  2233455543332 1                  345555668889999887

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>KOG0913|consensus

Probab=96.45  E-value=0.00053  Score=52.82  Aligned_cols=67  Identities=21%  Similarity=0.439  Sum_probs=48.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .|. .++.|+++|||.|+...|.+..++.--.+  .++++-.|.+..                       +..+.-+|=+
T Consensus        39 ~ge-wmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDvt~-----------------------npgLsGRF~v   92 (248)
T KOG0913|consen   39 TGE-WMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDVTT-----------------------NPGLSGRFLV   92 (248)
T ss_pred             chH-HHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEEEe-----------------------ccccceeeEE
Confidence            455 46899999999999999999877654333  345555554432                       3566778889


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .+.|++|=  + ++|-
T Consensus        93 taLptIYH--v-kDGe  105 (248)
T KOG0913|consen   93 TALPTIYH--V-KDGE  105 (248)
T ss_pred             EecceEEE--e-eccc
Confidence            99999997  6 6783

>KOG3414|consensus

Probab=96.37  E-value=0.044  Score=38.38  Aligned_cols=63  Identities=16%  Similarity=0.372  Sum_probs=51.8

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ..+.+||-|.-.|-|.|.++-..|.++.++..+-   ..+..+.+|+                       -+.+.+.|++
T Consensus        22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~Iylvdide-----------------------V~~~~~~~~l   75 (142)
T KOG3414|consen   22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDE-----------------------VPDFVKMYEL   75 (142)
T ss_pred             cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecch-----------------------hhhhhhhhcc
Confidence            6889999999999999999999999999998764   4455555553                       3677889999


Q ss_pred             CCCCeeeee
Q psy8729         124 HGIPSLILL  132 (190)
Q Consensus       124 ~~~P~~~l~  132 (190)
                      ...|++.+|
T Consensus        76 ~~p~tvmfF   84 (142)
T KOG3414|consen   76 YDPPTVMFF   84 (142)
T ss_pred             cCCceEEEE
Confidence            999988773

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.34  E-value=0.013  Score=51.04  Aligned_cols=61  Identities=13%  Similarity=0.099  Sum_probs=46.4

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+..-+..|.+++||+|......+++++...    +++..-.|  |...                     .+++...|++
T Consensus       115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~----~~i~~~~i--d~~~---------------------~~~~~~~~~v  167 (517)
T PRK15317        115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLN----PNITHTMI--DGAL---------------------FQDEVEARNI  167 (517)
T ss_pred             CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC----CCceEEEE--Echh---------------------CHhHHHhcCC
Confidence            3555688899999999999999998887753    23555444  3322                     4788899999


Q ss_pred             CCCCeeee
Q psy8729         124 HGIPSLIL  131 (190)
Q Consensus       124 ~~~P~~~l  131 (190)
                      .++|++++
T Consensus       168 ~~VP~~~i  175 (517)
T PRK15317        168 MAVPTVFL  175 (517)
T ss_pred             cccCEEEE
Confidence            99999987

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=96.24  E-value=0.059  Score=36.72  Aligned_cols=76  Identities=12%  Similarity=0.277  Sum_probs=50.7

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ..++++|+=.++.||-+......+++......++   +.+..+.+-...                   +..+.+++.|||
T Consensus        18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R-------------------~vSn~IAe~~~V   75 (105)
T PF11009_consen   18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYR-------------------PVSNAIAEDFGV   75 (105)
T ss_dssp             --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGH-------------------HHHHHHHHHHT-
T ss_pred             ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCc-------------------hhHHHHHHHhCC
Confidence            5778888888999999999999999888876543   667777765333                   126789999998


Q ss_pred             C-CCCeeeeeeecCCCceEEEccc
Q psy8729         124 H-GIPSLILLAVEAGGRLDVITTE  146 (190)
Q Consensus       124 ~-~~P~~~l~~id~~g~~~i~~~~  146 (190)
                      . .-|.+++  + ++|  +++...
T Consensus        76 ~HeSPQ~il--i-~~g--~~v~~a   94 (105)
T PF11009_consen   76 KHESPQVIL--I-KNG--KVVWHA   94 (105)
T ss_dssp             ---SSEEEE--E-ETT--EEEEEE
T ss_pred             CcCCCcEEE--E-ECC--EEEEEC
Confidence            6 7899999  8 578  555443

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>KOG2603|consensus

Probab=96.08  E-value=0.071  Score=43.02  Aligned_cols=89  Identities=15%  Similarity=0.192  Sum_probs=63.6

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEEcC----CChhhhhhhHHHHHHHHHHhhcCC---cEEEEEeeCCCCHHHHH
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAH----WCPPCKAFTPQLIETYRKLKEDGY---QFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~----wC~~C~~~~~~l~~l~~~~~~~g~---~~~ii~i~~d~~~~~~~   96 (190)
                      ...+++++.++...+. .-.++.-++|.|.|.    .|+-|+....+++-+++.+...++   .-++.+..+|-++    
T Consensus        40 ~~VI~~n~d~~~~~v~-~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e----  114 (331)
T KOG2603|consen   40 SGVIRMNDDKFSKFVR-PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE----  114 (331)
T ss_pred             CCeEEecCcchhhhcc-CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc----
Confidence            3457788888765555 333666678888874    599999999999999888775532   2334444444333    


Q ss_pred             HHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecC
Q psy8729          97 SYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEA  136 (190)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~  136 (190)
                                       .+++.+++++.+.|++++  +.+
T Consensus       115 -----------------~p~~Fq~l~ln~~P~l~~--f~P  135 (331)
T KOG2603|consen  115 -----------------SPQVFQQLNLNNVPHLVL--FSP  135 (331)
T ss_pred             -----------------cHHHHHHhcccCCCeEEE--eCC
Confidence                             468899999999999999  655

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.05  E-value=0.014  Score=43.09  Aligned_cols=34  Identities=32%  Similarity=0.439  Sum_probs=30.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhc
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKED   77 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~   77 (190)
                      .++++++.|+...||+|+.+.+.+..+.++++++
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~   47 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD   47 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC
Confidence            6788999999999999999999999998887543

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=95.79  E-value=0.12  Score=40.12  Aligned_cols=94  Identities=19%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCC-cEEEEEeeCCCCHHHHH-HHHhCCCCCcccCCc--hhHHHHHH
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGY-QFEIIFVSSDRSESSYQ-SYLSGMPWPAIPYAS--ETRQSLAS  119 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~-~~~ii~i~~d~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~  119 (190)
                      .|+++||.+-..+|..|..-+..|..|..++..+|. ++.++.|+-......+. ..++..--..+|+..  .....+=.
T Consensus        25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~q~dvW~  104 (238)
T PF04592_consen   25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDENQPDVWE  104 (238)
T ss_pred             CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCccccCHHH
Confidence            799999999999999999999999999999998874 88888888654433332 233333222355542  22445555


Q ss_pred             HcCCCCCCeeeeeeecCCCce
Q psy8729         120 LYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       120 ~~~v~~~P~~~l~~id~~g~~  140 (190)
                      .++-..- .+++  +|+=||+
T Consensus       105 ~L~G~kd-D~~i--yDRCGrL  122 (238)
T PF04592_consen  105 LLNGSKD-DFLI--YDRCGRL  122 (238)
T ss_pred             HhCCCcC-cEEE--EeccCcE
Confidence            5554432 4777  8999954

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.75  E-value=0.037  Score=48.25  Aligned_cols=61  Identities=13%  Similarity=0.183  Sum_probs=45.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .++.-+-.|.++.||+|......+++++...+    ++..-.|  |...                     .+++..+|++
T Consensus       116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~i--d~~~---------------------~~~~~~~~~v  168 (515)
T TIGR03140       116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTMI--DGAL---------------------FQDEVEALGI  168 (515)
T ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEEE--Echh---------------------CHHHHHhcCC
Confidence            45556888999999999999999988877643    3444333  3322                     4678899999


Q ss_pred             CCCCeeee
Q psy8729         124 HGIPSLIL  131 (190)
Q Consensus       124 ~~~P~~~l  131 (190)
                      .++|++++
T Consensus       169 ~~VP~~~i  176 (515)
T TIGR03140       169 QGVPAVFL  176 (515)
T ss_pred             cccCEEEE
Confidence            99999987

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.29  E-value=0.03  Score=49.65  Aligned_cols=82  Identities=20%  Similarity=0.208  Sum_probs=53.6

Q ss_pred             ceeeeeccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCch
Q psy8729          36 TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASE  112 (190)
Q Consensus        36 ~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~  112 (190)
                      +.+.....++|+++|....+||.-|..+..+-   .++++-+++.     +|.|.+|.++              .|....
T Consensus        34 eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREE--------------RPDvD~   94 (667)
T COG1331          34 EAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREE--------------RPDVDS   94 (667)
T ss_pred             HHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhh--------------ccCHHH
Confidence            33333445899999999999999999987633   3344445443     7778888543              111111


Q ss_pred             hHHHHHHHc-CCCCCCeeeeeeecCCC
Q psy8729         113 TRQSLASLY-NVHGIPSLILLAVEAGG  138 (190)
Q Consensus       113 ~~~~~~~~~-~v~~~P~~~l~~id~~g  138 (190)
                      .-..+++.. |-.+.|-+++  +-++|
T Consensus        95 ~Ym~~~q~~tG~GGWPLtVf--LTPd~  119 (667)
T COG1331          95 LYMNASQAITGQGGWPLTVF--LTPDG  119 (667)
T ss_pred             HHHHHHHHhccCCCCceeEE--ECCCC
Confidence            123444443 5678999999  99999

>PRK10824 glutaredoxin-4; Provisional

Probab=95.27  E-value=0.11  Score=36.07  Aligned_cols=49  Identities=18%  Similarity=0.137  Sum_probs=31.1

Q ss_pred             CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeee
Q psy8729          55 HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL  131 (190)
Q Consensus        55 ~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l  131 (190)
                      ||||+|++....|+.+.       .++..  +.++.+.+ .                  ...+.+.-|-..+|.+|+
T Consensus        28 p~Cpyc~~ak~lL~~~~-------i~~~~--idi~~d~~-~------------------~~~l~~~sg~~TVPQIFI   76 (115)
T PRK10824         28 PSCGFSAQAVQALSACG-------ERFAY--VDILQNPD-I------------------RAELPKYANWPTFPQLWV   76 (115)
T ss_pred             CCCchHHHHHHHHHHcC-------CCceE--EEecCCHH-H------------------HHHHHHHhCCCCCCeEEE
Confidence            59999999998886542       22334  34443332 1                  234444457888999998

>PTZ00062 glutaredoxin; Provisional

Probab=95.17  E-value=0.11  Score=39.76  Aligned_cols=64  Identities=16%  Similarity=0.176  Sum_probs=37.3

Q ss_pred             eeccCCcEEEEEE---EcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHH
Q psy8729          40 SYIESCQVIGLYF---SAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQS  116 (190)
Q Consensus        40 ~~~~~~k~vlv~F---~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (190)
                      ..+.++++++..=   ++|||++|++....|++.       |  +.+..++++.+++ +                  ...
T Consensus       108 ~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-------~--i~y~~~DI~~d~~-~------------------~~~  159 (204)
T PTZ00062        108 RLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-------G--VKYETYNIFEDPD-L------------------REE  159 (204)
T ss_pred             HHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-------C--CCEEEEEcCCCHH-H------------------HHH
Confidence            3443454433333   337999999988888642       2  2333455554332 1                  244


Q ss_pred             HHHHcCCCCCCeeee
Q psy8729         117 LASLYNVHGIPSLIL  131 (190)
Q Consensus       117 ~~~~~~v~~~P~~~l  131 (190)
                      +.+..|...+|.+++
T Consensus       160 l~~~sg~~TvPqVfI  174 (204)
T PTZ00062        160 LKVYSNWPTYPQLYV  174 (204)
T ss_pred             HHHHhCCCCCCeEEE
Confidence            455557788999998

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=94.94  E-value=0.1  Score=44.27  Aligned_cols=63  Identities=13%  Similarity=0.268  Sum_probs=36.6

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      |+.|..+|||+|++....|.+       .|..++.  ++++.+++ ...+.++.+          ...+.+..|...+|+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~--idi~~~~~-~~~~~~~~~----------~~~~~~~~g~~tvP~   63 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQ--ISLDDDVK-RAEFYAEVN----------KNILLVEEHIRTVPQ   63 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-------CCCCeEE--EECCCChh-HHHHHHHHh----------hccccccCCCCccCe
Confidence            667899999999999888854       2334554  45553332 111211110          001233467888998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        64 ifi   66 (410)
T PRK12759         64 IFV   66 (410)
T ss_pred             EEE
Confidence            877

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=94.90  E-value=0.34  Score=34.30  Aligned_cols=61  Identities=21%  Similarity=0.387  Sum_probs=48.1

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ..|+++|-|...|-|.|.++-..|.+.+++.+.-   ..+..+..+.                       -+.+.+.|.+
T Consensus        19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~-----------------------Vpdfn~~yel   72 (133)
T PF02966_consen   19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDE-----------------------VPDFNQMYEL   72 (133)
T ss_dssp             SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTT-----------------------THCCHHHTTS
T ss_pred             CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEccc-----------------------chhhhccccc
Confidence            6899999999999999999999999999988764   6677777764                       2456788998


Q ss_pred             CCCCeeee
Q psy8729         124 HGIPSLIL  131 (190)
Q Consensus       124 ~~~P~~~l  131 (190)
                      . .|..++
T Consensus        73 ~-dP~tvm   79 (133)
T PF02966_consen   73 Y-DPCTVM   79 (133)
T ss_dssp             --SSEEEE
T ss_pred             C-CCeEEE
Confidence            8 776555

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.86  E-value=0.12  Score=32.82  Aligned_cols=69  Identities=20%  Similarity=0.335  Sum_probs=44.7

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCee
Q psy8729          50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSL  129 (190)
Q Consensus        50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~  129 (190)
                      +.|++..||.|.....+|.++.-       ++..  |.+-.+.+-+++|++-..-  .|     .-.-.+..|--++|.+
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl~v-------~yd~--VeIt~Sm~NlKrFl~lRDs--~~-----~Fd~vk~~gyiGIPal   68 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERLNV-------DYDF--VEITESMANLKRFLHLRDS--RP-----EFDEVKSNGYIGIPAL   68 (85)
T ss_pred             eeeccccCcchHHHHHHHHHcCC-------Ccee--eehhhhhhhHHHHHhhhcc--ch-----hHHhhhhcCcccceEE
Confidence            57899999999988888865322       2334  4445566778888874421  00     1122456788889998


Q ss_pred             eeeeecCCC
Q psy8729         130 ILLAVEAGG  138 (190)
Q Consensus       130 ~l~~id~~g  138 (190)
                      .+    .+|
T Consensus        69 l~----~d~   73 (85)
T COG4545          69 LT----DDG   73 (85)
T ss_pred             Ee----CCC
Confidence            88    567

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=94.14  E-value=0.057  Score=41.29  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=28.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhc
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKED   77 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~   77 (190)
                      .+++.||.|+...||+|..+.+.+   ..+.+.+++.
T Consensus        36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~   72 (207)
T PRK10954         36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG   72 (207)
T ss_pred             CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC
Confidence            467889999999999999999866   6777777643

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.06  E-value=0.13  Score=39.49  Aligned_cols=94  Identities=16%  Similarity=0.306  Sum_probs=65.8

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEE-E-EcC----CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLY-F-SAH----WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~-F-~a~----wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      ++.+...+|...+.+.+....-++|+ | ++|    -|+.|.-.+..+......+...  ++.+++|+-- -.+++..|-
T Consensus        54 ~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~--dv~lv~VsRA-Pl~~l~~~k  130 (247)
T COG4312          54 DYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH--DVTLVAVSRA-PLEELVAYK  130 (247)
T ss_pred             eeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc--CceEEEEecC-cHHHHHHHH
Confidence            34445556666666666433344444 2 244    5999999999997777776654  5888888754 467889999


Q ss_pred             hCCCCCcccCCchhHHHHHHHcCC
Q psy8729         100 SGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      +.+||. ++........+...|++
T Consensus       131 ~rmGW~-f~w~Ss~~s~Fn~Df~v  153 (247)
T COG4312         131 RRMGWQ-FPWVSSTDSDFNRDFQV  153 (247)
T ss_pred             HhcCCc-ceeEeccCccccccccc
Confidence            999997 77776666777777765

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=93.73  E-value=0.34  Score=38.38  Aligned_cols=121  Identities=7%  Similarity=-0.017  Sum_probs=61.5

Q ss_pred             cccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhc-CCcEEEEEeeCCCCH--HHHHHH
Q psy8729          23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKED-GYQFEIIFVSSDRSE--SSYQSY   98 (190)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~-g~~~~ii~i~~d~~~--~~~~~~   98 (190)
                      ..|++.-....++.......-.|++.||..+ ..|-..|...--  ....++|... +..++++-|++.++.  .-+..+
T Consensus       100 yFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~--~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~  177 (252)
T PF05176_consen  100 YFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWT--SPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKL  177 (252)
T ss_pred             cCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHh--hHHHHHHhhCCCCceEEEEEecchHHHHHHHHHH
Confidence            3455554444443333333337888777655 444433322211  1233444433 126999999986543  112222


Q ss_pred             Hh-CC-------CCCcccCCch--hHHHHHHHcCCCC--CCeeeeeeecCCCceEEEcccc
Q psy8729          99 LS-GM-------PWPAIPYASE--TRQSLASLYNVHG--IPSLILLAVEAGGRLDVITTEA  147 (190)
Q Consensus        99 ~~-~~-------~~~~~~~~~~--~~~~~~~~~~v~~--~P~~~l~~id~~g~~~i~~~~~  147 (190)
                      +. .+       .+..+-+..+  ....+.+.+|+..  +..+|+  +|.+|||+..+.+.
T Consensus       178 ~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyL--VD~~grIRWagsG~  236 (252)
T PF05176_consen  178 FMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYL--VDPNGRIRWAGSGP  236 (252)
T ss_pred             HhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEE--ECCCCeEEeCccCC
Confidence            21 11       1222212222  2568899999875  455666  99999665555443

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=93.44  E-value=0.68  Score=28.61  Aligned_cols=52  Identities=19%  Similarity=0.258  Sum_probs=33.5

Q ss_pred             EEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeee
Q psy8729          51 YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLI  130 (190)
Q Consensus        51 ~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~  130 (190)
                      .|+.+||+.|++..-.|..       .|..++++.++....                      ...+.+......+|++.
T Consensus         3 ly~~~~~p~~~rv~~~L~~-------~gl~~e~~~v~~~~~----------------------~~~~~~~np~~~vP~L~   53 (71)
T cd03060           3 LYSFRRCPYAMRARMALLL-------AGITVELREVELKNK----------------------PAEMLAASPKGTVPVLV   53 (71)
T ss_pred             EEecCCCcHHHHHHHHHHH-------cCCCcEEEEeCCCCC----------------------CHHHHHHCCCCCCCEEE
Confidence            5678999999998777743       234566766654321                      13455555667888775


Q ss_pred             e
Q psy8729         131 L  131 (190)
Q Consensus       131 l  131 (190)
                      .
T Consensus        54 ~   54 (71)
T cd03060          54 L   54 (71)
T ss_pred             E
Confidence            5

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=93.09  E-value=0.27  Score=35.64  Aligned_cols=81  Identities=16%  Similarity=0.300  Sum_probs=57.4

Q ss_pred             eeccCCcEEEEEEE--cCCChhhhh-hhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC-cccCCchhHH
Q psy8729          40 SYIESCQVIGLYFS--AHWCPPCKA-FTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP-AIPYASETRQ  115 (190)
Q Consensus        40 ~~~~~~k~vlv~F~--a~wC~~C~~-~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~  115 (190)
                      +++.++|.+ |.|.  +...|.|.. .+|...+++.++..+|.+ +|+.|+++ +..-+..|.+..+-. .+.+..|.+.
T Consensus        32 ~~lf~gKkV-vlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD-~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~Dg~g  108 (165)
T COG0678          32 DDLFKGKKV-VLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVD-EIYCVSVN-DAFVMNAWAKSQGGEGNIKFIPDGNG  108 (165)
T ss_pred             HHhcCCCEE-EEEeCCCccCCCcccccCccHHHHHHHHHHcCCc-eEEEEEeC-cHHHHHHHHHhcCCCccEEEecCCCc
Confidence            333456644 3344  455677776 899999999999988622 35566666 566777888877655 6777888889


Q ss_pred             HHHHHcCC
Q psy8729         116 SLASLYNV  123 (190)
Q Consensus       116 ~~~~~~~v  123 (190)
                      ++.+.+|.
T Consensus       109 eFTk~~Gm  116 (165)
T COG0678         109 EFTKAMGM  116 (165)
T ss_pred             hhhhhcCc
Confidence            99998875

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=92.41  E-value=0.74  Score=33.81  Aligned_cols=67  Identities=18%  Similarity=0.392  Sum_probs=49.8

Q ss_pred             CCcE-EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          44 SCQV-IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        44 ~~k~-vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .+++ +++.|..............++.++++++++   +.++.+..+.                       ...+.+.||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~-----------------------~~~~~~~~~  146 (184)
T PF13848_consen   93 SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADD-----------------------FPRLLKYFG  146 (184)
T ss_dssp             TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTT-----------------------THHHHHHTT
T ss_pred             CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHH-----------------------hHHHHHHcC
Confidence            4545 666676666778888888899999888765   6677776653                       246788999


Q ss_pred             CC--CCCeeeeeeecCCC
Q psy8729         123 VH--GIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~--~~P~~~l~~id~~g  138 (190)
                      +.  .+|.+++  ++...
T Consensus       147 i~~~~~P~~vi--~~~~~  162 (184)
T PF13848_consen  147 IDEDDLPALVI--FDSNK  162 (184)
T ss_dssp             TTTSSSSEEEE--EETTT
T ss_pred             CCCccCCEEEE--EECCC
Confidence            98  8999999  88543

...

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=92.33  E-value=0.72  Score=40.69  Aligned_cols=66  Identities=18%  Similarity=0.186  Sum_probs=49.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+.+.++.|+.+.|..|......|+++.. +.+   .+.+...+...                       +....+.|++
T Consensus       365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~---~i~~~~~~~~~-----------------------~~~~~~~~~v  417 (555)
T TIGR03143       365 ENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSE---KLNSEAVNRGE-----------------------EPESETLPKI  417 (555)
T ss_pred             CCCEEEEEEECCCchhhHHHHHHHHHHHh-cCC---cEEEEEecccc-----------------------chhhHhhcCC
Confidence            67778889999999999988888877763 333   36655444332                       3567889999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      ...|++.+  ++.+|
T Consensus       418 ~~~P~~~i--~~~~~  430 (555)
T TIGR03143       418 TKLPTVAL--LDDDG  430 (555)
T ss_pred             CcCCEEEE--EeCCC
Confidence            99999999  87655

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=92.28  E-value=0.85  Score=33.07  Aligned_cols=14  Identities=14%  Similarity=0.152  Sum_probs=11.9

Q ss_pred             CChhhhhhhHHHHH
Q psy8729          56 WCPPCKAFTPQLIE   69 (190)
Q Consensus        56 wC~~C~~~~~~l~~   69 (190)
                      +||+|+.....|+.
T Consensus        15 t~~~C~~ak~iL~~   28 (147)
T cd03031          15 TFEDCNNVRAILES   28 (147)
T ss_pred             cChhHHHHHHHHHH
Confidence            89999998888854

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=92.04  E-value=0.35  Score=31.13  Aligned_cols=54  Identities=24%  Similarity=0.315  Sum_probs=40.3

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|..+.|+-|......|..+....     .+.+-.|+++.                       +..+.++|+. .+|.
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI~~-----------------------d~~l~~~Y~~-~IPV   52 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDIDE-----------------------DPELFEKYGY-RIPV   52 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEETTT-----------------------THHHHHHSCT-STSE
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEECCC-----------------------CHHHHHHhcC-CCCE
Confidence            67888999999999999997644332     36777777774                       3467889996 6998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +.+
T Consensus        53 l~~   55 (81)
T PF05768_consen   53 LHI   55 (81)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            777

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>KOG1672|consensus

Probab=91.93  E-value=0.32  Score=36.76  Aligned_cols=67  Identities=18%  Similarity=0.244  Sum_probs=53.5

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++.-||+.||-+.-..|+-+-..|..+++.+-+    ..++-|+...                       .+-+...++
T Consensus        82 ~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~-----------------------~PFlv~kL~  134 (211)
T KOG1672|consen   82 KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEK-----------------------APFLVTKLN  134 (211)
T ss_pred             hcCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEeccc-----------------------Cceeeeeee
Confidence            3677789999999999999999999999988743    4576666553                       346688999


Q ss_pred             CCCCCeeeeeeecCCCc
Q psy8729         123 VHGIPSLILLAVEAGGR  139 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~  139 (190)
                      |..+|++.+  + ++|+
T Consensus       135 IkVLP~v~l--~-k~g~  148 (211)
T KOG1672|consen  135 IKVLPTVAL--F-KNGK  148 (211)
T ss_pred             eeEeeeEEE--E-EcCE
Confidence            999999999  7 4564

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=91.69  E-value=0.65  Score=31.31  Aligned_cols=46  Identities=15%  Similarity=0.286  Sum_probs=28.3

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCC
Q psy8729          50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGM  102 (190)
Q Consensus        50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~  102 (190)
                      ..|+.++|+.|++....|++       .|..+..+-+.-+ .+.++++.+....
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~~   48 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAKL   48 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence            46789999999999888854       2334555555432 2345555554433

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=91.33  E-value=0.71  Score=31.39  Aligned_cols=47  Identities=13%  Similarity=0.200  Sum_probs=31.7

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCC
Q psy8729          50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMP  103 (190)
Q Consensus        50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~  103 (190)
                      ..|+.++|+.|++....|.+       .|..++++-+.-+ .+.++++.+++..+
T Consensus         2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~s~~eL~~~l~~~g   49 (105)
T cd03035           2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGLDAATLERWLAKVG   49 (105)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCCHHHHHHHHHHhC
Confidence            46789999999998888743       2334556555433 36677777776554

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=90.05  E-value=0.94  Score=31.02  Aligned_cols=44  Identities=18%  Similarity=0.410  Sum_probs=27.1

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-CHHHHHHHHh
Q psy8729          50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-SESSYQSYLS  100 (190)
Q Consensus        50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-~~~~~~~~~~  100 (190)
                      ..|+.++|+.|++....|++       .|..++.+-+.-+. +.++++.++.
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~   46 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLE   46 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHH
Confidence            35789999999999988854       23345555444332 3444444444

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=89.63  E-value=0.88  Score=31.14  Aligned_cols=66  Identities=18%  Similarity=0.209  Sum_probs=40.3

Q ss_pred             EEEEEEcCCChhh---hhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729          48 IGLYFSAHWCPPC---KAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH  124 (190)
Q Consensus        48 vlv~F~a~wC~~C---~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  124 (190)
                      ..|.|++..|.-|   ....=.+-++.+.+.+.   +....+..+  .                     ...+...||+.
T Consensus        28 ~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~---~~~avv~~~--~---------------------e~~L~~r~gv~   81 (107)
T PF07449_consen   28 DAVLFFAGDPARFPETADVAVILPELVKAFPGR---FRGAVVARA--A---------------------ERALAARFGVR   81 (107)
T ss_dssp             CEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTS---EEEEEEEHH--H---------------------HHHHHHHHT-T
T ss_pred             cEEEEECCCCCcCcccccceeEcHHHHHhhhCc---cceEEECch--h---------------------HHHHHHHhCCc
Confidence            3456666666544   44333556666777665   544444411  1                     47899999999


Q ss_pred             CCCeeeeeeecCCCceEEEc
Q psy8729         125 GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus       125 ~~P~~~l~~id~~g~~~i~~  144 (190)
                      ..|++++  + ++|  +.+.
T Consensus        82 ~~PaLvf--~-R~g--~~lG   96 (107)
T PF07449_consen   82 RWPALVF--F-RDG--RYLG   96 (107)
T ss_dssp             SSSEEEE--E-ETT--EEEE
T ss_pred             cCCeEEE--E-ECC--EEEE
Confidence            9999999  7 567  4443

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=87.94  E-value=3.8  Score=25.68  Aligned_cols=20  Identities=20%  Similarity=0.308  Sum_probs=15.5

Q ss_pred             EEEEcCCChhhhhhhHHHHH
Q psy8729          50 LYFSAHWCPPCKAFTPQLIE   69 (190)
Q Consensus        50 v~F~a~wC~~C~~~~~~l~~   69 (190)
                      ..++.++||+|.+..-.|.+
T Consensus         3 ~Ly~~~~sp~~~kv~~~L~~   22 (77)
T cd03041           3 ELYEFEGSPFCRLVREVLTE   22 (77)
T ss_pred             eEecCCCCchHHHHHHHHHH
Confidence            35667899999988877743

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=87.78  E-value=1.8  Score=30.68  Aligned_cols=47  Identities=17%  Similarity=0.181  Sum_probs=30.2

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGM  102 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~  102 (190)
                      +..|+.++|+.|++....|.+       .|..+..+-+.-+ .+.++++.+++..
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~~~~~~~~eL~~~l~~~   49 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEE-------HDIPFTERNIFSSPLTIDEIKQILRMT   49 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------cCCCcEEeeccCChhhHHHHHHHHHHh
Confidence            456789999999998877743       2334555444333 2456777777654

>PRK12559 transcriptional regulator Spx; Provisional

Probab=87.61  E-value=2.4  Score=29.99  Aligned_cols=46  Identities=15%  Similarity=0.247  Sum_probs=31.8

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSG  101 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~  101 (190)
                      +..|..++|+.|+.....|.+       .|..++.+-+.-+ .+.++++.+++.
T Consensus         2 i~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~~~~~s~~el~~~l~~   48 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLEE-------NQIDYTEKNIVSNSMTVDELKSILRL   48 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------cCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence            456789999999998877743       2334555555443 466788888876

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=86.68  E-value=2.6  Score=28.98  Aligned_cols=47  Identities=17%  Similarity=0.190  Sum_probs=30.3

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGM  102 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~  102 (190)
                      +..|+.++|+.|++....|++       .|..++++-+.-+ .+.++++.+++..
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~~~~~~el~~~~~~~   49 (115)
T cd03032           2 IKLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQPLTKEELKEILSLT   49 (115)
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCCcchHHHHHHHHHHh
Confidence            346778999999998888854       2334555544333 3456677777644

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=86.68  E-value=5.2  Score=33.18  Aligned_cols=82  Identities=20%  Similarity=0.221  Sum_probs=44.5

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChh--hhhhh---HHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPP--CKAFT---PQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS  100 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~--C~~~~---~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~  100 (190)
                      .+.|+..++...+    ++...++|+|+.+--..  .++..   ..+-+++.+.-++ .++.+-.|+...          
T Consensus        36 Vi~LneKNfk~~l----Kkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~-~gigfg~VD~~K----------  100 (383)
T PF01216_consen   36 VIDLNEKNFKRAL----KKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED-KGIGFGMVDSKK----------  100 (383)
T ss_dssp             CEEE-TTTHHHHH----HH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG-CTEEEEEEETTT----------
T ss_pred             eEEcchhHHHHHH----HhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc-cCcceEEeccHH----------
Confidence            3445555544333    36778889998775321  21111   2233344444333 347777676654          


Q ss_pred             CCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         101 GMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                                   +..+++++|+...+++++  +. +|
T Consensus       101 -------------d~klAKKLgv~E~~SiyV--fk-d~  122 (383)
T PF01216_consen  101 -------------DAKLAKKLGVEEEGSIYV--FK-DG  122 (383)
T ss_dssp             -------------THHHHHHHT--STTEEEE--EE-TT
T ss_pred             -------------HHHHHHhcCccccCcEEE--EE-CC
Confidence                         468999999999999999  74 55

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=86.23  E-value=2.1  Score=29.53  Aligned_cols=46  Identities=20%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCC
Q psy8729          50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGM  102 (190)
Q Consensus        50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~  102 (190)
                      ..|+.++|+.|++....|.+       .|..+.++-+.-+ .+.+++..+++..
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~   48 (117)
T TIGR01617         2 KVYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLL   48 (117)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHc
Confidence            35789999999999988854       2323444433322 2345555555544

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=85.75  E-value=5.3  Score=27.35  Aligned_cols=52  Identities=6%  Similarity=0.167  Sum_probs=36.1

Q ss_pred             hhhhhhHHHHHHHHHHh-hcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCC----CCeeeeee
Q psy8729          59 PCKAFTPQLIETYRKLK-EDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHG----IPSLILLA  133 (190)
Q Consensus        59 ~C~~~~~~l~~l~~~~~-~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~P~~~l~~  133 (190)
                      .-......+.+++++++ ++   +.++.++.+  .                     .....+.||+..    .|.+.+  
T Consensus        32 ~~~~~~~~~~~vAk~fk~gk---i~Fv~~D~~--~---------------------~~~~l~~fgl~~~~~~~P~~~i--   83 (111)
T cd03073          32 GTNYWRNRVLKVAKDFPDRK---LNFAVADKE--D---------------------FSHELEEFGLDFSGGEKPVVAI--   83 (111)
T ss_pred             HHHHHHHHHHHHHHHCcCCe---EEEEEEcHH--H---------------------HHHHHHHcCCCcccCCCCEEEE--
Confidence            44567888899999998 44   555555433  2                     234678899974    999999  


Q ss_pred             ecCCC
Q psy8729         134 VEAGG  138 (190)
Q Consensus       134 id~~g  138 (190)
                      ++.++
T Consensus        84 ~~~~~   88 (111)
T cd03073          84 RTAKG   88 (111)
T ss_pred             EeCCC
Confidence            87654

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=83.49  E-value=4.9  Score=27.68  Aligned_cols=21  Identities=24%  Similarity=0.589  Sum_probs=18.7

Q ss_pred             HHHHHHHcCCCCCCeeeeeeecC
Q psy8729         114 RQSLASLYNVHGIPSLILLAVEA  136 (190)
Q Consensus       114 ~~~~~~~~~v~~~P~~~l~~id~  136 (190)
                      ++.+.++|+|..+|++++  ...
T Consensus        60 dP~~F~~y~I~~VPa~V~--~~~   80 (113)
T PF09673_consen   60 DPRLFRQYNITAVPAFVV--VKD   80 (113)
T ss_pred             ChhHHhhCCceEcCEEEE--EcC
Confidence            789999999999999999  654

The N-terminal portion of these proteins is heterogeneous.

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=83.38  E-value=2.3  Score=33.07  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=27.2

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhh
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKE   76 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~   76 (190)
                      .++++++.|....||+|+...+.+.+.+....+
T Consensus        83 ~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~  115 (244)
T COG1651          83 YAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGK  115 (244)
T ss_pred             CCCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence            348899999999999999999999886555543

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=83.06  E-value=5.7  Score=24.18  Aligned_cols=32  Identities=25%  Similarity=0.132  Sum_probs=21.3

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC
Q psy8729          50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS   88 (190)
Q Consensus        50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~   88 (190)
                      ..|+.++|+.|++..-.+..       .|..++.+.++.
T Consensus         2 ~ly~~~~~~~~~~v~~~l~~-------~gi~~~~~~v~~   33 (73)
T cd03059           2 TLYSGPDDVYSHRVRIVLAE-------KGVSVEIIDVDP   33 (73)
T ss_pred             EEEECCCChhHHHHHHHHHH-------cCCccEEEEcCC
Confidence            35678899999999877743       234455655544

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=83.04  E-value=5.5  Score=28.08  Aligned_cols=67  Identities=18%  Similarity=0.363  Sum_probs=45.4

Q ss_pred             CcEEEEEEEcC--CCh-hh-hhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH
Q psy8729          45 CQVIGLYFSAH--WCP-PC-KAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL  120 (190)
Q Consensus        45 ~k~vlv~F~a~--wC~-~C-~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (190)
                      +...+|.|.-+  .|. .+ ......+.+++++|+++  .+.++.++.+..                       ..+.+.
T Consensus        20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk--~i~Fv~vd~~~~-----------------------~~~~~~   74 (130)
T cd02983          20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK--PWGWLWTEAGAQ-----------------------LDLEEA   74 (130)
T ss_pred             CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC--cEEEEEEeCccc-----------------------HHHHHH
Confidence            45566666532  243 23 34567888899999765  377887777642                       347889


Q ss_pred             cCCC--CCCeeeeeeecCCC
Q psy8729         121 YNVH--GIPSLILLAVEAGG  138 (190)
Q Consensus       121 ~~v~--~~P~~~l~~id~~g  138 (190)
                      ||+.  .+|++++  ++.++
T Consensus        75 fgl~~~~~P~v~i--~~~~~   92 (130)
T cd02983          75 LNIGGFGYPAMVA--INFRK   92 (130)
T ss_pred             cCCCccCCCEEEE--Eeccc
Confidence            9985  5999999  77755

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=82.33  E-value=5.4  Score=28.25  Aligned_cols=47  Identities=11%  Similarity=0.170  Sum_probs=31.0

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGM  102 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~  102 (190)
                      +..|+.++|+.|+.....|.+       .|..++++-+.-+ .+.++++.+++..
T Consensus         2 i~iY~~~~C~~crkA~~~L~~-------~~i~~~~~d~~~~~~s~~eL~~~l~~~   49 (132)
T PRK13344          2 IKIYTISSCTSCKKAKTWLNA-------HQLSYKEQNLGKEPLTKEEILAILTKT   49 (132)
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-------cCCCeEEEECCCCCCCHHHHHHHHHHh
Confidence            346778999999998777643       2334555554433 4667788887754

>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family

Probab=81.77  E-value=9.6  Score=29.00  Aligned_cols=77  Identities=10%  Similarity=0.182  Sum_probs=52.0

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC-----cccCCchhHHHHHHHcC
Q psy8729          48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP-----AIPYASETRQSLASLYN  122 (190)
Q Consensus        48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  122 (190)
                      .+..|--..|+.|......+..     .+  -.+.+..|..+.+++.++.|...+++.     .-.++...+..--..||
T Consensus       111 rlalFvkd~C~~C~~~~~~l~a-----~~--~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~lg  183 (200)
T TIGR03759       111 RLALFVKDDCVACDARVQRLLA-----DN--APLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQLG  183 (200)
T ss_pred             eEEEEeCCCChHHHHHHHHHhc-----CC--CceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHHcc
Confidence            4556667999999998888743     22  358888888788899999999988742     22333333444455677


Q ss_pred             C-CCCCeeee
Q psy8729         123 V-HGIPSLIL  131 (190)
Q Consensus       123 v-~~~P~~~l  131 (190)
                      + ..+|..+.
T Consensus       184 ~~g~lP~~l~  193 (200)
T TIGR03759       184 LQGQLPAVVQ  193 (200)
T ss_pred             CCCCCCEEEE
Confidence            5 45776644

Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=80.61  E-value=6.2  Score=27.14  Aligned_cols=48  Identities=10%  Similarity=0.292  Sum_probs=33.0

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCCC
Q psy8729          50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMPW  104 (190)
Q Consensus        50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~~  104 (190)
                      ..|+.+.|..|++....|.+       .|..++++-+.-+ .+.++++.++++.++
T Consensus         3 ~iy~~p~C~~crkA~~~L~~-------~gi~~~~~d~~~~p~s~~eL~~~l~~~g~   51 (113)
T cd03033           3 IFYEKPGCANNARQKALLEA-------AGHEVEVRDLLTEPWTAETLRPFFGDLPV   51 (113)
T ss_pred             EEEECCCCHHHHHHHHHHHH-------cCCCcEEeehhcCCCCHHHHHHHHHHcCH
Confidence            46779999999988777743       2344666555443 467888888876653

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=80.17  E-value=17  Score=25.15  Aligned_cols=71  Identities=20%  Similarity=0.302  Sum_probs=41.2

Q ss_pred             hhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCC-CCeeeeeeecC
Q psy8729          58 PPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHG-IPSLILLAVEA  136 (190)
Q Consensus        58 ~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~P~~~l~~id~  136 (190)
                      +.=+.....|++-...+.++  ++.++.+..+....           ..-+........+.+.|++.. .-++++  |++
T Consensus        23 ~~~~~q~~~L~~~~~~l~eR--di~v~~i~~~~~~~-----------~~~~~~~~~~~~lr~~l~~~~~~f~~vL--iGK   87 (118)
T PF13778_consen   23 PRYQQQLEELQNNRCGLDER--DIVVIVITGDGARS-----------PGKPLSPEDIQALRKRLRIPPGGFTVVL--IGK   87 (118)
T ss_pred             HHHHHHHHHHHhhhhccccC--ceEEEEEeCCcccc-----------ccCcCCHHHHHHHHHHhCCCCCceEEEE--EeC
Confidence            34455566666655556665  57777774432111           112233344678899998763 346777  999


Q ss_pred             CCceEEE
Q psy8729         137 GGRLDVI  143 (190)
Q Consensus       137 ~g~~~i~  143 (190)
                      +|.++..
T Consensus        88 DG~vK~r   94 (118)
T PF13778_consen   88 DGGVKLR   94 (118)
T ss_pred             CCcEEEe
Confidence            9955444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
1okd_A	154	Nmr-Structure Of Tryparedoxin 1 Length = 154		4e-23
1ezk_A	153	Crystal Structure Of Recombinant Tryparedoxin I Len		5e-23
1ewx_A	146	Crystal Structure Of Native Tryparedoxin I From Cri		5e-23
1qk8_A	146	Tryparedoxin-I From Crithidia Fasciculata Length =		5e-23
3s9f_A	165	The Structure Of Tryparedoxin I From Leishmania Maj		3e-22
1o8x_A	146	Mutant Tryparedoxin-I Cys43ala Length = 146		4e-22
1o6j_A	150	Tryparedoxin Ii From C.Fasciculata Solved By Sulphu		4e-18
1fg4_A	149	Structure Of Tryparedoxin Ii Length = 149		4e-18
1oc9_A	152	Tryparedoxin Ii From C.Fasciculata Solved By Mr Len		5e-18
1o81_A	152	Tryparedoxin Ii From C.fasciculata Solved By Sulphu		5e-18
1o73_A	144	Tryparedoxin From Trypanosoma Brucei Length = 144		9e-18
1i5g_A	144	Tryparedoxin Ii Complexed With Glutathionylspermidi		6e-17
2lus_A	143	Nmr Structure Of Carcinoscorpius Rotundicauda Thior		1e-14

>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I Length = 153

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 30  AEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXX 89
            +G V  K L+     +++  YFSA WCPPC+ FTPQLIE Y K  E    FE++F    
Sbjct: 16  GDGEVEVKSLA----GKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWD 70
Query: 90  XXXXXXXXXXXGMPWPAIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEAR 148
                       MPW A+P+A SE  Q L+  +NV  IP+LI +  ++G   DV+TT AR
Sbjct: 71  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSG---DVVTTRAR 127
Query: 149 HELSEDPDGEFFPW 162
             L +DP+GE FPW
Sbjct: 128 ATLVKDPEGEQFPW 141

>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia Fasciculata Length = 146

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 30  AEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXX 89
            +G V  K L+     +++  YFSA WCPPC+ FTPQLIE Y K  E    FE++F    
Sbjct: 17  GDGEVEVKSLA----GKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWD 71
Query: 90  XXXXXXXXXXXGMPWPAIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEAR 148
                       MPW A+P+A SE  Q L+  +NV  IP+LI +  ++G   DV+TT AR
Sbjct: 72  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSG---DVVTTRAR 128
Query: 149 HELSEDPDGEFFPW 162
             L +DP+GE FPW
Sbjct: 129 ATLVKDPEGEQFPW 142

>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata Length = 146

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 30  AEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXX 89
            +G V  K L+     +++  YFSA WCPPC+ FTPQLIE Y K  E    FE++F    
Sbjct: 17  GDGEVEVKSLA----GKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWD 71
Query: 90  XXXXXXXXXXXGMPWPAIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEAR 148
                       MPW A+P+A SE  Q L+  +NV  IP+LI +  ++G   DV+TT AR
Sbjct: 72  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSG---DVVTTRAR 128
Query: 149 HELSEDPDGEFFPW 162
             L +DP+GE FPW
Sbjct: 129 ATLVKDPEGEQFPW 142

>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major Length = 165

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 44  SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMP 103
           S + +  YFSA WCPPC+ FTPQL+E Y K   D   FEII                 MP
Sbjct: 47  SGKTVFFYFSASWCPPCRGFTPQLVEFYEK-HHDSKNFEIILASWDEEEDDFNAYYAKMP 105
Query: 104 WPAIPYASET-RQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
           W +IP+A+    ++L   Y+V  IP+LI L  + G   D +TT ARH L++DP GE FPW
Sbjct: 106 WLSIPFANRNIVEALTKKYSVESIPTLIGLNADTG---DTVTTRARHALTQDPMGEQFPW 162

>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala Length = 146

Iteration: 1
 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 30  AEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXX 89
            +G V  K L+     +++  YFSA WCPP + FTPQLIE Y K  E    FE++F    
Sbjct: 17  GDGEVEVKSLA----GKLVFFYFSASWCPPARGFTPQLIEFYDKFHE-SKNFEVVFCTWD 71
Query: 90  XXXXXXXXXXXGMPWPAIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEAR 148
                       MPW A+P+A SE  Q L+  +NV  IP+LI +  ++G   DV+TT AR
Sbjct: 72  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSG---DVVTTRAR 128
Query: 149 HELSEDPDGEFFPW 162
             L +DP+GE FPW
Sbjct: 129 ATLVKDPEGEQFPW 142

>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur Phasing Length = 150

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWP 105
           + +  YFSA WCPPC+AFTPQLI+ Y+   E    FE++ +               MPW 
Sbjct: 30  KTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKK-NFEVMLISWDESAEDFKDYYAKMPWL 88
Query: 106 AIPYASETRQSLASL---YNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
           A+P+  E R+ +  L   ++V  IP+L+ +  ++G   ++ITT+AR  + +DP+ + FPW
Sbjct: 89  ALPF--EDRKGMEFLTTGFDVKSIPTLVGVEADSG---NIITTQARTMVVKDPEAKDFPW 143
Query: 163 P 163
           P
Sbjct: 144 P 144

>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii Length = 149

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWP 105
           + +  YFSA WCPPC+AFTPQLI+ Y+   E    FE++ +               MPW 
Sbjct: 29  KTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKK-NFEVMLISWDESAEDFKDYYAKMPWL 87
Query: 106 AIPYASETRQSLASL---YNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
           A+P+  E R+ +  L   ++V  IP+L+ +  ++G   ++ITT+AR  + +DP+ + FPW
Sbjct: 88  ALPF--EDRKGMEFLTTGFDVKSIPTLVGVEADSG---NIITTQARTMVVKDPEAKDFPW 142
Query: 163 P 163
           P
Sbjct: 143 P 143

>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr Length = 152

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWP 105
           + +  YFSA WCPPC+AFTPQLI+ Y+   E    FE++ +               MPW 
Sbjct: 32  KTVFFYFSASWCPPCRAFTPQLIDFYKAHAESK-NFEVMLISWDESAEDFKDYYAKMPWL 90
Query: 106 AIPYASETRQSLASL---YNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
           A+P+  E R+ +  L   ++V  IP+L+ +  ++G   ++ITT+AR  + +DP+ + FPW
Sbjct: 91  ALPF--EDRKGMEFLTTGFDVKSIPTLVGVEADSG---NIITTQARTMVVKDPEAKDFPW 145
Query: 163 P 163
           P
Sbjct: 146 P 146

>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur Phasing Length = 152

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWP 105
           + +  YFSA WCPPC+AFTPQLI+ Y+   E    FE++ +               MPW 
Sbjct: 32  KTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKK-NFEVMLISWDESAEDFKDYYAKMPWL 90
Query: 106 AIPYASETRQSLASL---YNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
           A+P+  E R+ +  L   ++V  IP+L+ +  ++G   ++ITT+AR  + +DP+ + FPW
Sbjct: 91  ALPF--EDRKGMEFLTTGFDVKSIPTLVGVEADSG---NIITTQARTMVVKDPEAKDFPW 145
Query: 163 P 163
           P
Sbjct: 146 P 146

>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei Length = 144

Iteration: 1
 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWP 105
           + + LYFSA WCPPC+ FTP L E Y K       FE++ +               MPW 
Sbjct: 29  KTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENESDFHDYYGKMPWL 87
Query: 106 AIPYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWP 163
           A+P+   +  S L   + V  IP+LI +  + G    +I T+AR  + EDPDG  FPWP
Sbjct: 88  ALPFDQRSTVSELGKTFGVESIPTLITINADTGA---IIGTQARTRVIEDPDGANFPWP 143

>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine Length = 144

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 9/121 (7%)
Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGMPWP 105
           + +  YFSA WCPP +AFTPQLI+ Y+   E    FE++ +               MPW 
Sbjct: 29  KTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK-NFEVMLISWDESAEDFKDYYAKMPWL 87
Query: 106 AIPYASETRQSLASL---YNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPW 162
           A+P+  E R+ +  L   ++V  IP+L+ +  ++G   ++ITT+AR  + +DP+ + FPW
Sbjct: 88  ALPF--EDRKGMEFLTTGFDVKSIPTLVGVEADSG---NIITTQARTMVVKDPEAKDFPW 142
Query: 163 P 163
           P
Sbjct: 143 P 143

>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin Related Protein 16 And Its Role In Regulating Transcription Factor Nf-Kb Activity Length = 143

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVXXXXXXXXXXXXXXGM--P 103
            +IG YFSAHWCPPC+ FTP L + Y +L +D   FEIIFV                   
Sbjct: 27  DIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGD 86
Query: 104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHEL 151
           W AIPY S    ++ + Y + GIP+L++  V+  G L  I+   R E+
Sbjct: 87  WLAIPYRSGPASNVTAKYGITGIPALVI--VKKDGTL--ISMNGRGEV 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	3e-45
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	3e-44
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	7e-44
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	1e-43
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	2e-43
2lrt_A	152	Uncharacterized protein; structural genomics, thio	3e-19
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	5e-18
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	5e-17
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	1e-16
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	7e-16
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	8e-16
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	9e-16
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	3e-15
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	5e-15
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	5e-15
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	8e-14
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	5e-13
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	4e-12
4evm_A	138	Thioredoxin family protein; structural genomics, n	4e-12
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	1e-11
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	1e-11
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	6e-11
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	7e-11
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	1e-10
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	1e-10
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	2e-10
3raz_A	151	Thioredoxin-related protein; structural genomics,	4e-10
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	8e-10
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	9e-10
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	1e-09
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	2e-09
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	7e-09
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	2e-08
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	3e-08
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	5e-08
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	8e-08
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	2e-07
2l57_A	126	Uncharacterized protein; structural genomics, unkn	7e-07
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	5e-05
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	1e-04
2kuc_A	130	Putative disulphide-isomerase; structural genomics	2e-04
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	2e-04
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	2e-04
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	2e-04
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	4e-04
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	6e-04
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	6e-04
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	6e-04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	7e-04
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	9e-04

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score =  145 bits (367), Expect = 3e-45
 Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 6/131 (4%)

Query: 35  TTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESS 94
                  ++   +IG YFSAHWCPPC+ FTP L + Y +L +D   FEIIFVSSDRSE  
Sbjct: 16  EVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDD 75

Query: 95  YQSYLS--GMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELS 152
              Y+      W AIPY S    ++ + Y + GIP+L+++  +  G   +I+   R E+ 
Sbjct: 76  MFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKD--GT--LISMNGRGEVQ 131

Query: 153 EDPDGEFFPWP 163
                 F  W 
Sbjct: 132 SLGPRAFQNWA 142

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score =  142 bits (361), Expect = 3e-44
 Identities = 55/121 (45%), Positives = 75/121 (61%), Gaps = 5/121 (4%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
           +++  YFSA WCPP + FTPQLIE Y K  E    FE++F + D  E  +  Y + MPW 
Sbjct: 29  KLVFFYFSASWCPPARGFTPQLIEFYDKFHESK-NFEVVFCTWDEEEDGFAGYFAKMPWL 87

Query: 106 AIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPP 164
           A+P+A SE  Q L+  +NV  IP+LI +  ++G   DV+TT AR  L +DP+GE FPW  
Sbjct: 88  AVPFAQSEAVQKLSKHFNVESIPTLIGVDADSG---DVVTTRARATLVKDPEGEQFPWKD 144

Query: 165 K 165
            
Sbjct: 145 A 145

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score =  142 bits (359), Expect = 7e-44
 Identities = 44/119 (36%), Positives = 75/119 (63%), Gaps = 5/119 (4%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
           + +  YFSA WCPP +AFTPQLI+ Y+    +   FE++ +S D S   ++ Y + MPW 
Sbjct: 29  KTVFFYFSASWCPPSRAFTPQLIDFYKAHA-EKKNFEVMLISWDESAEDFKDYYAKMPWL 87

Query: 106 AIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWP 163
           A+P+   +  + L + ++V  IP+L+ +  ++G   ++ITT+AR  + +DP+ + FPWP
Sbjct: 88  ALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSG---NIITTQARTMVVKDPEAKDFPWP 143

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score =  142 bits (359), Expect = 1e-43
 Identities = 55/120 (45%), Positives = 72/120 (60%), Gaps = 5/120 (4%)

Query: 47  VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA 106
            +  YFSA WCPPC+ FTPQL+E Y K   D   FEII  S D  E  + +Y + MPW +
Sbjct: 50  TVFFYFSASWCPPCRGFTPQLVEFYEKHH-DSKNFEIILASWDEEEDDFNAYYAKMPWLS 108

Query: 107 IPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPK 165
           IP+A     ++L   Y+V  IP+LI L  + G   D +TT ARH L++DP GE FPW  +
Sbjct: 109 IPFANRNIVEALTKKYSVESIPTLIGLNADTG---DTVTTRARHALTQDPMGEQFPWRDE 165

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score =  140 bits (356), Expect = 2e-43
 Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 5/119 (4%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
           + + LYFSA WCPPC+ FTP L E Y K       FE++ +S D +ES +  Y   MPW 
Sbjct: 29  KTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAK-NFEVVLISWDENESDFHDYYGKMPWL 87

Query: 106 AIPYASETRQS-LASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWP 163
           A+P+   +  S L   + V  IP+LI +  + G    +I T+AR  + EDPDG  FPWP
Sbjct: 88  ALPFDQRSTVSELGKTFGVESIPTLITINADTG---AIIGTQARTRVIEDPDGANFPWP 143

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 78.9 bits (195), Expect = 3e-19
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
           +V+ + F+ +      A    L E Y K    G  FEI  +S D  E  +++    +PW 
Sbjct: 36  KVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHFWKTSADNLPWV 93

Query: 106 AIPYASETRQSLASLYNVHGIPSLILL 132
            +  A+    S  SLYNV  +PS+ L+
Sbjct: 94  CVRDANGAYSSYISLYNVTNLPSVFLV 120

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 75.5 bits (186), Expect = 5e-18
 Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 8/92 (8%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIET---YRKLKEDGYQFEIIFVSSDRSESSYQSYLS-- 100
           Q   L+F    C  C+ F     E       ++       ++ +  D +   + +     
Sbjct: 28  QYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAIYPDENREEWATKAVYM 85

Query: 101 GMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
              W  + +          LY++   P++ LL
Sbjct: 86  PQGWI-VGWNKAGDIRTRQLYDIRATPTIYLL 116

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 73.1 bits (180), Expect = 5e-17
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWPAI 107
           + F    C  C+  TP L++TY   K+ G  F I  VS+DR E  ++  +      W  +
Sbjct: 34  VDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRREEDWKKAIEEDKSYWNQV 91

Query: 108 PYASETRQSLASLYNVHGIPSLILL 132
               +  + +   Y + G P +IL+
Sbjct: 92  LLQKDDVKDVLESYCIVGFPHIILV 116

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 71.6 bits (176), Expect = 1e-16
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKE-DGYQFEIIFVSSDRSESSYQSYLS--GM 102
           +   L+ +   C  C      L  +          + +++ +  D     ++ + +    
Sbjct: 32  EYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAK 91

Query: 103 PWPAIPYASETRQSLASLYNVHGIPSLILL 132
            W    Y  E      +LY++  IP+L LL
Sbjct: 92  EWT-NGYDKELVIKNKNLYDLRAIPTLYLL 120

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 70.1 bits (172), Expect = 7e-16
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWPAI 107
           L+F    C  C+  TP+L + + K +  G   ++   + +R +  +  ++    +     
Sbjct: 36  LFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDEEWLKFIRSKKIGGWLN 93

Query: 108 PYASETRQSLASLYNVHGIPSLILL 132
              S+        Y+++  P L +L
Sbjct: 94  VRDSKNHTDFKITYDIYATPVLYVL 118

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 70.0 bits (172), Expect = 8e-16
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMP 103
           + I +   A WC PC+   P L E   K          + +S D+++ ++++ ++   + 
Sbjct: 31  KYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCDKNKKAWENMVTKDQLK 88

Query: 104 WPAIPYASETRQSLASLYNVHGIPSLILL 132
              I     T ++    Y ++GIP  ILL
Sbjct: 89  G--IQLHMGTDRTFMDAYLINGIPRFILL 115

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 69.7 bits (171), Expect = 9e-16
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWPAI 107
           L F A WC P      +L    ++ K++   F ++ +S D    ++++ +    + W  +
Sbjct: 38  LNFWASWCDPQPEANAELKRLNKEYKKNK-NFAMLGISLDIDREAWETAIKKDTLSWDQV 96

Query: 108 PYASETRQSLASLYNVHGIPSLILL 132
              +      A  Y +  +P+ ILL
Sbjct: 97  CDFTGLSSETAKQYAILTLPTNILL 121

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 68.8 bits (169), Expect = 3e-15
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMP 103
            V+ L F A WC PC+   P + +   K K  G  F+++ V+ D        +L+     
Sbjct: 29  SVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGDAMKFLAQVPAE 86

Query: 104 WPAIPYASETRQSLASLYNVHGIPSLILL 132
           +     A + +     LY V G+P+  L+
Sbjct: 87  FTV---AFDPKGQTPRLYGVKGMPTSFLI 112

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150

 Score = 67.8 bits (166), Expect = 5e-15
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 50  LYFSAHWCPPC--KAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWP 105
           + F A W      K    +L E Y+K K++     ++ +S D  +  ++  +    + W 
Sbjct: 38  INFWASWNDSISQKQSNSELREIYKKYKKNK-YIGMLGISLDVDKQQWKDAIKRDTLDWE 96

Query: 106 AIPYASETRQSLASLYNVHGIPSLILL 132
            +         +A  Y+++ IP+ ILL
Sbjct: 97  QVCDFGGLNSEVAKQYSIYKIPANILL 123

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 67.7 bits (166), Expect = 5e-15
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMP 103
           + + L F   WC PCK   P +   Y+  K  G   EI+ V+   S+ +  +++   G+ 
Sbjct: 27  KGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMKSYGVN 84

Query: 104 WPAIPYASETRQSLASLYNVHGIPSLILL 132
           +   P   +T + +   Y+V  +P+  L+
Sbjct: 85  F---PVVLDTDRQVLDAYDVSPLPTTFLI 110

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 64.3 bits (157), Expect = 8e-14
 Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWP-A 106
           L F A +    +A   QL     K   D     +  +S D  ES +   +    +     
Sbjct: 37  LNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDEKESIFTETVKIDKLDLSTQ 94

Query: 107 IPYASETRQSLASLYNVHGIPSLILL 132
                     L   Y++       L+
Sbjct: 95  FHEGLGKESELYKKYDLRKGFKNFLI 120

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 62.7 bits (153), Expect = 5e-13
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMP 103
           +V+ L F+A WC  C+   P + +      +D   F +I +  D       ++    G+ 
Sbjct: 34  KVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVT 93

Query: 104 WPAIPYASETRQSLASLYNVH--GIPSLILL 132
           +P      +    + + Y +   GI   +L+
Sbjct: 94  YPL---GLDPGADIFAKYALRDAGITRNVLI 121

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-SESSYQSYLS--GM 102
           +V  + F    CP C +  P++I+T    K     F+++ V+       S + Y+   G+
Sbjct: 29  KVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPIESVRQYVKDYGL 86

Query: 103 PWPAIPYASETRQSLASLYNVHGIPSLILL 132
           P+       +  +++   +     P+ +L+
Sbjct: 87  PFTV---MYDADKAVGQAFGTQVYPTSVLI 113

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 60.0 bits (146), Expect = 4e-12
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 54  AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR----SESSYQSYLSGMPWPAIPY 109
           A WC  C A  P   E  ++  +D     +  VS       SE+ ++++  G+ +  +P 
Sbjct: 31  ASWCSICLASLPDTDEIAKEAGDDY--VVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPV 88

Query: 110 ASETRQSLASLYNVHGIPSLILL 132
             +    L   Y V   P+   +
Sbjct: 89  LVDPSGKLLETYGVRSYPTQAFI 111

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 54  AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWPAI--PY 109
           A WCPPC++  P +++  +     G  F  + ++ +    + ++Y+   G+ +P +    
Sbjct: 43  ATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATP 100

Query: 110 ASETRQSLASLYNVHGIPSLILL 132
                 +      + GIP+  ++
Sbjct: 101 ELIRAFNGYIDGGITGIPTSFVI 123

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 54  AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-SESSYQSYLS--GMPWPAIPYA 110
           A WCPPC+   P ++     +      F ++ VS D   + + + +    G      P  
Sbjct: 37  ATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEGGKVAVEEFFRKTGFTL---PVL 91

Query: 111 SETRQSLASLYNVHGIPSLILL 132
            +  + +  LY   G+P   ++
Sbjct: 92  LDADKRVGKLYGTTGVPETFVI 113

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVS---SDRSESSYQSYLS-- 100
           Q   L+F   WCPPCK   PQ    Y     D    +++ V+   S++++   + ++   
Sbjct: 35  QKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLVNSEQNQQVVEDFIKAN 92

Query: 101 GMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
            + +P      +++  L   Y++  IP+  LL
Sbjct: 93  KLTFPI---VLDSKGELMKEYHIITIPTSFLL 121

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 56.5 bits (137), Expect = 7e-11
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMP 103
           +   L+F   WCP C A  P L +              + +++     + QS++S   + 
Sbjct: 25  KPAVLWFWTPWCPFCNAEAPSLSQVAAANPA----VTFVGIATRADVGAMQSFVSKYNLN 80

Query: 104 WPAIPYASETRQSLASLYNVHGIPSLILL 132
           +  +   ++    + + YNV   P+ +  
Sbjct: 81  FTNL---NDADGVIWARYNVPWQPAFVFY 106

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352

 Score = 58.5 bits (141), Expect = 1e-10
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 12/94 (12%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS-----DRSESSYQSYLS 100
           +V+ + F A+ C  C+   P ++  Y+  K+ G    +I V +     ++   +     +
Sbjct: 83  KVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVHTPEYAFEKVPGNVAKGAA 140

Query: 101 --GMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
             G+ +   P A +   +  + Y     P+  L+
Sbjct: 141 NLGISY---PIALDNNYATWTNYRNRYWPAEYLI 171

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 11/87 (12%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
           +++ + F A WCP C+   P +    +   +      ++ V+ ++           + + 
Sbjct: 42  KIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEKRFPEKYRRA-PVSF- 97

Query: 106 AIPYASETRQSLASLYNVHGIPSLILL 132
              + S+    +   Y  + +P   ++
Sbjct: 98  --NFLSDATGQVQQRYGANRLPDTFIV 122

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 54  AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-SESSYQSYLS--GMPWPAIPYA 110
           A WC PC+   P L E   KL      FE++ ++ D       +++L    +        
Sbjct: 69  ATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTFLKEANLTRLGYFND 126

Query: 111 SETR--QSLASLYNVHGIPSLILL 132
            + +  Q L ++    G+P+ +L+
Sbjct: 127 QKAKVFQDLKAIGRALGMPTSVLV 150

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMP 103
            V  +   A WC PC+   P + + Y+  K+     +++ ++ D S++   ++L    + 
Sbjct: 25  PVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIALDTSDNI-GNFLKQTPVS 81

Query: 104 WPAIPYASETRQSLASLY--NVHGIPSLILL 132
           +P   Y     ++    Y   V  +P  ++ 
Sbjct: 82  YPIWRYTGANSRNFMKTYGNTVGVLPFTVVE 112

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160

 Score = 54.1 bits (130), Expect = 8e-10
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 14/99 (14%)

Query: 46  QVIGLYFSAHWCPPCKAFT-PQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS---- 100
           +V+ +      CP C     PQ  + +R + E     ++I + S        +  +    
Sbjct: 31  KVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEHHDVMTPEALKVF 88

Query: 101 ----GMPWPAI---PYASETRQSLASLYNVHGIPSLILL 132
               G+ +P     P   +   S    Y + G PS+IL 
Sbjct: 89  IDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILA 127

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154

 Score = 53.9 bits (130), Expect = 9e-10
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 52  FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS--GMPWPAIPY 109
           F A WC  CKA  P L       +E G  F +I      +      Y+       P +  
Sbjct: 37  FWASWCTVCKAEFPGLHRVA---EETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLAS 93

Query: 110 ASETRQSLASLYNVHGIP 127
             +    +A+ + V G P
Sbjct: 94  DRDRPHEVAARFKVLGQP 111

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 13/98 (13%)

Query: 46  QVIGLYFSAHWCPPCKAFT-PQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS---- 100
           +VI +      CP C     P   +      ED     ++ + +        + +S    
Sbjct: 29  KVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTVFEHHEAMTPISLKAF 86

Query: 101 ----GMPWPAI--PYASETRQSLASLYNVHGIPSLILL 132
                + +P               + Y + G PSL+L+
Sbjct: 87  LHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLI 124

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 21/104 (20%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
            V+ L+F A WCP C      L     K +E      +I +    +E+     L+   +P
Sbjct: 38  DVVILWFMAAWCPSCVYMADLLDRLTEKYRE----ISVIAIDFWTAEALKALGLNKPGYP 93

Query: 106 AIPYASETRQ-----------------SLASLYNVHGIPSLILL 132
                   R+                 SL   +NV  I  ++++
Sbjct: 94  PPDTPEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIM 137

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 51.1 bits (123), Expect = 7e-09
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
           +   L+F A WCP C+   P + +      E       + V+      + Q +++  P  
Sbjct: 26  KPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVPAMQEFVNKYPVK 81

Query: 106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHE 150
                ++T  S+ + + V   P+     V+  G +DV+      +
Sbjct: 82  TFTQLADTDGSVWANFGVTQQPAYAF--VDPHGNVDVVRGRMSQD 124

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-----RSESSYQSYLS 100
           +   + F A WCP C +   Q  +  +  K       +I V+S      + +  +Q + +
Sbjct: 39  KPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHEKKDGEFQKWYA 96

Query: 101 GMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
           G+ +P +P  ++   ++A   N+   PS  L+
Sbjct: 97  GLNYPKLPVVTDNGGTIAQNLNISVYPSWALI 128

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS-----DRSESSYQSYLS 100
           +   ++F +  C  CK   PQ+ E   K ++   Q  ++ V       D      +   +
Sbjct: 30  KPTLIHFWSISCHLCKEAMPQVNEFRDKYQD---QLNVVAVHMPRSEDDLDPGKIKETAA 86

Query: 101 GMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
                  P   ++  +L   +    +P+  + 
Sbjct: 87  EHDIT-QPIFVDSDHALTDAFENEYVPAYYVF 117

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 48.0 bits (115), Expect = 5e-08
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 27/92 (29%)

Query: 40  SYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL 99
           +YIE  Q++ L+     C  C     ++      + E+    E I +             
Sbjct: 13  TYIEEQQLVLLFIKTENCGVCDVMLRKVNY----VLENYNYVEKIEILLQDM-------- 60

Query: 100 SGMPWPAIPYASETRQSLASLYNVHGIPSLIL 131
                          Q +A  Y V   P+++L
Sbjct: 61  ---------------QEIAGRYAVFTGPTVLL 77

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 54  AHWCPPCKAFTPQLIETYRKLKEDGYQ----FEIIFVS-SDRSESSYQSYLS--GMPWPA 106
             WC PC++ +  L   + +L+  G        ++ ++  D S    Q +++  G+ +P+
Sbjct: 68  GQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPS 127

Query: 107 IPYASETRQSLASLYNVHGIPSLILL 132
           I        +         IP+ I+L
Sbjct: 128 IYDPPFMTAASLGGVPASVIPTTIVL 153

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 24/115 (20%)

Query: 20  GAKKTY--NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKED 77
            A + +  NI   E T   +    ++  +    +     CP C+ F   L     + K  
Sbjct: 2   NAMEQFLDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETK-- 59

Query: 78  GYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
                I F++S+                         Q+  S Y +  +P  + +
Sbjct: 60  ---AHIYFINSEEPSQ-----------------LNDLQAFRSRYGIPTVPGFVHI 94

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 24/81 (29%)

Query: 52  FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
           F    CP C     +L       KE   +F I +   +  ++                  
Sbjct: 33  FKTDTCPYCVEMQKELSYVS---KEREGKFNIYYARLEEEKN------------------ 71

Query: 112 ETRQSLASLYNVHGIPSLILL 132
                LA  Y+ + +P+ + L
Sbjct: 72  ---IDLAYKYDANIVPTTVFL 89

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 25/97 (25%)

Query: 36  TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY 95
           T + +     ++I LYF   W  PCKA        +  +  +     + F+S D  E+  
Sbjct: 12  TYLTTTAAGDKLIVLYFHTSWAEPCKALKQ----VFEAISNEPSNSNVSFLSIDADEN-- 65

Query: 96  QSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
                                ++ L+ +  +P  I++
Sbjct: 66  -------------------SEISELFEISAVPYFIII 83

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A Length = 167

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
           L     WCP C+     L       +      E+  +S  R+E   +  L+     AIP
Sbjct: 59  LVAGEMWCPDCQINLAAL----DFAQRLQPNIELAIISKGRAEDDLRQRLALERI-AIP 112

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 21/106 (19%)

Query: 27  IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFV 86
           I   E +    +       +++ +     WC PCK  +  + +           F  + +
Sbjct: 9   IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKM 68

Query: 87  SSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
             ++ E                        L   Y VH  P+L+ +
Sbjct: 69  DMEKGEG---------------------VELRKKYGVHAYPTLLFI 93

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPY 109
           +     WC  CKA  P+  E+  ++ E  + F ++ +  +           G   P I +
Sbjct: 51  VIIHKSWCGACKALKPKFAES-TEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILF 109

Query: 110 ASETRQSLASLYNVHGIP 127
              + +    + N +G P
Sbjct: 110 LDPSGKVHPEIINENGNP 127

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 6/84 (7%), Positives = 22/84 (26%), Gaps = 31/84 (36%)

Query: 52  FSAHWCPPCKAFTP---QLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
                 P          +L+  +       + +++     ++S                 
Sbjct: 43  SDPRRTPEVSDNPVMIAELLREF-----PQFDWQVAVADLEQS----------------- 80

Query: 109 YASETRQSLASLYNVHGIPSLILL 132
                 +++   +NV   P+ ++ 
Sbjct: 81  ------EAIGDRFNVRRFPATLVF 98

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 23/84 (27%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKL--KEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI 107
           L   +  CP C    PQLI+  +++      + +  +    + S +              
Sbjct: 36  LAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAA-------------- 81

Query: 108 PYASETRQSLASLYNVHGIPSLIL 131
                  +   +   V G P+L+ 
Sbjct: 82  -------RLEMNKAGVEGTPTLVF 98

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 1/44 (2%)

Query: 50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSES 93
          L F    C  C  +  ++   Y    E G    +  +       
Sbjct: 23 LMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPLP 65

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 26/97 (26%)

Query: 36  TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY 95
            ++    E  + I + F+A WC PCK   P             Y  ++IF+  D      
Sbjct: 15  AQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSND-----YAGKVIFLKVDVDAV-- 67

Query: 96  QSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILL 132
                               ++A    +  +P+  + 
Sbjct: 68  -------------------AAVAEAAGITAMPTFHVY 85

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 23/81 (28%)

Query: 51  YFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYA 110
            F A WC  CK F P+  +    LK+      +  + +  +                   
Sbjct: 38  EFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSA------------------- 78

Query: 111 SETRQSLASLYNVHGIPSLIL 131
                 LAS ++V G P++ +
Sbjct: 79  ----SVLASRFDVSGYPTIKI 95

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 20/83 (24%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPY 109
           L   A WC  CK F      T+   +      + + + ++ + +  Q             
Sbjct: 36  LDLYADWCVACKEFEK---YTFSDPQVQKALADTVLLQANVTANDAQD------------ 80

Query: 110 ASETRQSLASLYNVHGIPSLILL 132
                 +L    NV G+P+++  
Sbjct: 81  -----VALLKHLNVLGLPTILFF 98

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 28/84 (33%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKL-KEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP 108
            YF +     C   TP L      L  +   QF +  +  D                   
Sbjct: 31  FYFWSERSQHCLQLTPIL----ESLAAQYNGQFILAKLDCDAE----------------- 69

Query: 109 YASETRQSLASLYNVHGIPSLILL 132
                 Q +A+ + +  IP++ L 
Sbjct: 70  ------QMIAAQFGLRAIPTVYLF 87

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 36.6 bits (85), Expect = 9e-04
 Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 27/80 (33%)

Query: 52  FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS 111
           F  + CP CK     +++   K      Q  I  V S+                      
Sbjct: 26  FHKNLCPHCKNMEK-VLD---KFGARAPQVAISSVDSEAR-------------------- 61

Query: 112 ETRQSLASLYNVHGIPSLIL 131
                L        +P+L+ 
Sbjct: 62  ---PELMKELGFERVPTLVF 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.93
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.93
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.92
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.92
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.89
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.88
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.88
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.87
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.87
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.86
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.86
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.86
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.85
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.85
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.85
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.84
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.84
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.84
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.75
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.84
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.84
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.84
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.84
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.83
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.83
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.83
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.83
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.83
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.83
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.83
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.82
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.82
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.82
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.82
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.82
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.81
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.81
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.81
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.81
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.8
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.8
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.8
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.8
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.79
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.79
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.66
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.78
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.78
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.78
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.78
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.78
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.78
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.78
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.78
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.78
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.78
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.78
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.78
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.78
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.78
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.78
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.78
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.78
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.77
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.77
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.77
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.77
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.77
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.77
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.77
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.77
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.77
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.77
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.77
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.77
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.77
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.77
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.76
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.76
3me7_A	170	Putative uncharacterized protein; electron transfe	99.76
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.76
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.76
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.76
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.76
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.76
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.75
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.75
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.75
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.74
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.74
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.74
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.73
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.71
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.71
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.7
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.69
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.66
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.66
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.64
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.64
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.64
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.63
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.63
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.62
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.61
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.61
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.61
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.59
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.59
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.59
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.59
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.59
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.58
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.57
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.57
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.57
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.57
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.57
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.57
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.57
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.57
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.56
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.56
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.56
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.56
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.56
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.56
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.56
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.55
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.55
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.55
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.55
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.54
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.54
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.54
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.54
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.54
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.54
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.53
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.53
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.53
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.53
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.52
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.52
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.52
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.52
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.52
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.52
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.52
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.52
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.52
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.51
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.51
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.51
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.5
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.5
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.5
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.49
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.49
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.49
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.49
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.49
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.48
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.48
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.48
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.48
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.48
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.48
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.48
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.47
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.47
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.47
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.46
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.46
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.46
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.46
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.18
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.45
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.45
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.44
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.44
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.43
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.43
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.43
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.43
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.42
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.42
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.42
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.42
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.4
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.39
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.39
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.37
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.06
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.36
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.35
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.34
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.34
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.33
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.33
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.33
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.32
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.31
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.31
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.31
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.3
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.3
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.29
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.29
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.28
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.28
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.27
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.27
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.23
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.23
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.21
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.2
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.2
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.1
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.07
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.05
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.99
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.97
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.96
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.96
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.96
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.94
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.9
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.89
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	98.89
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.88
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.84
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.81
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.8
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.77
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.74
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.69
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.69
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.64
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.6
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.58
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.51
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.51
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.51
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.49
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.48
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.45
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.27
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.2
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.18
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.18
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.13
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.12
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	98.11
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.11
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.08
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.97
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.97
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.95
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.95
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	97.94
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.93
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	97.9
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	97.86
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	97.84
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.82
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	97.78
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.66
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	97.6
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	97.42
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	97.38
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	97.34
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	97.3
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.3
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.1
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	97.01
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	96.99
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	96.76
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	96.73
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	96.69
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	96.62
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	96.45
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	96.44
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	96.36
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	96.21
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	96.18
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	96.12
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	96.09
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	96.07
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	95.73
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	95.7
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	95.67
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	95.57
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	95.03
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	94.81
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	94.73
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	94.69
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	93.74
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	91.9
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	91.71
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	91.7
3l78_A	120	Regulatory protein SPX; transcription, transcripti	91.44
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	91.39
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	91.36
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	91.31
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	91.28
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	91.05
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	90.8
3fz4_A	120	Putative arsenate reductase; APC61768, structural	90.3
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	90.04
3rdw_A	121	Putative arsenate reductase; structural genomics,	89.41
3gkx_A	120	Putative ARSC family related protein; ARSC family	88.34
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	85.92
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	85.23
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	84.28
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	83.25
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	83.01
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	80.87

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.93  E-value=4.4e-25  Score=158.17  Aligned_cols=136  Identities=36%  Similarity=0.744  Sum_probs=119.8

Q ss_pred             cccc-eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhC
Q psy8729          23 KTYN-IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG  101 (190)
Q Consensus        23 ~~~~-~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~  101 (190)
                      ..|. |++.+.++....++.+ ++++++|+||++||++|+.++|.|+++++++++. .++.+++|++|.+.+.+++|+++
T Consensus         6 ~~P~~f~l~~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~   83 (144)
T 1i5g_A            6 FFPYSTNVLKGAAADIALPSL-AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAEDFKDYYAK   83 (144)
T ss_dssp             SCSSCSEEEETTEEEEEGGGG-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTT
T ss_pred             hCCCceEEEcCCCCEecHHHc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CCEEEEEEeCCCCHHHHHHHHHh
Confidence            4566 7888888777777666 7899999999999999999999999999999852 25999999999999999999999


Q ss_pred             CCCCcccCCc-hhHHHHHHHcCCCCCCeeeeeeec-CCCceEEEccccccccccCCCCCcCCCCc
Q psy8729         102 MPWPAIPYAS-ETRQSLASLYNVHGIPSLILLAVE-AGGRLDVITTEARHELSEDPDGEFFPWPP  164 (190)
Q Consensus       102 ~~~~~~~~~~-~~~~~~~~~~~v~~~P~~~l~~id-~~g~~~i~~~~~~~~~~~~~~~~~~~~~~  164 (190)
                      ++|..+++.. +....+.+.|++.++|++++  +| ++|  +++...+.+...++..++.+||.+
T Consensus        84 ~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~~G--~i~~~~~~~~~~~~~~~~~~~w~~  144 (144)
T 1i5g_A           84 MPWLALPFEDRKGMEFLTTGFDVKSIPTLVG--VEADSG--NIITTQARTMVVKDPEAKDFPWPN  144 (144)
T ss_dssp             CSSEECCTTCHHHHHHHHHHTTCCSSSEEEE--EETTTC--CEEESCHHHHHHHCTTCTTTTCCC
T ss_pred             CCccccccCchHHHHHHHHHcCCCCCCEEEE--EECCCC--cEEeccchhhhhhCcccccCCCCC
Confidence            9988888876 55789999999999999999  99 899  888888888888899999999964

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.93  E-value=2.2e-25  Score=163.99  Aligned_cols=136  Identities=42%  Similarity=0.806  Sum_probs=120.2

Q ss_pred             cccce-eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhC
Q psy8729          23 KTYNI-GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG  101 (190)
Q Consensus        23 ~~~~~-~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~  101 (190)
                      ..|++ .+.+.++ ...++.+ +++++||+||++||++|+.++|.|++++++|++. .++.+++|++|.+.+.+++|+++
T Consensus        27 ~~P~f~~l~~~~g-~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~v~vv~v~~d~~~~~~~~~~~~  103 (165)
T 3s9f_A           27 HLGEALKLRKQAD-TADMDSL-SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDS-KNFEIILASWDEEEDDFNAYYAK  103 (165)
T ss_dssp             HHHHTSCEEETTE-EECSGGG-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHTT
T ss_pred             cCCcceeeecCCC-cccHHHc-CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccC-CCeEEEEEecCCCHHHHHHHHHh
Confidence            45666 7777777 5555665 7899999999999999999999999999999863 26999999999999999999999


Q ss_pred             CCCCcccCCchhH-HHHHHHcCCCCCCeeeeeeecCC-CceEEEccccccccccCCCCCcCCCCcc
Q psy8729         102 MPWPAIPYASETR-QSLASLYNVHGIPSLILLAVEAG-GRLDVITTEARHELSEDPDGEFFPWPPK  165 (190)
Q Consensus       102 ~~~~~~~~~~~~~-~~~~~~~~v~~~P~~~l~~id~~-g~~~i~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
                      ++|..+++..+.. ..+.+.|++.++|++++  ||++ |  +++...+.....++...+.|||.+.
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~l--id~~~G--~iv~~~~~~~~~~d~~~~~fpw~~~  165 (165)
T 3s9f_A          104 MPWLSIPFANRNIVEALTKKYSVESIPTLIG--LNADTG--DTVTTRARHALTQDPMGEQFPWRDE  165 (165)
T ss_dssp             CSSEECCTTCHHHHHHHHHHTTCCSSSEEEE--EETTTC--CEEESCHHHHHHHCTTCTTTTCCCC
T ss_pred             CCCcccccCchhHHHHHHHHcCCCCCCEEEE--EeCCCC--EEEecccHHHHhhCcccccCCCCCC
Confidence            9998888887654 89999999999999999  9998 9  8899999899999999999999863

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.92  E-value=9.8e-25  Score=156.78  Aligned_cols=136  Identities=42%  Similarity=0.801  Sum_probs=119.2

Q ss_pred             cccc-eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhC
Q psy8729          23 KTYN-IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG  101 (190)
Q Consensus        23 ~~~~-~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~  101 (190)
                      ..|+ |.+.+.++ ...++.+ ++++++|+||++||++|+.++|.|+++++++++. .++.+++|++|.+.+.+++|+++
T Consensus         7 ~~P~~f~l~~~~g-~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~   83 (146)
T 1o8x_A            7 YLPGIEKLRRGDG-EVEVKSL-AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES-KNFEVVFCTWDEEEDGFAGYFAK   83 (146)
T ss_dssp             TSTTCCEEEETTE-EEEGGGG-TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHTT
T ss_pred             hCCCceEEEcCCC-CCcHHHh-CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhc-CCeEEEEEeCCCCHHHHHHHHHH
Confidence            4566 78888887 6666665 7899999999999999999999999999999842 26999999999999999999999


Q ss_pred             CCCCcccCCc-hhHHHHHHHcCCCCCCeeeeeeec-CCCceEEEccccccccccCCCCCcCCCCcc
Q psy8729         102 MPWPAIPYAS-ETRQSLASLYNVHGIPSLILLAVE-AGGRLDVITTEARHELSEDPDGEFFPWPPK  165 (190)
Q Consensus       102 ~~~~~~~~~~-~~~~~~~~~~~v~~~P~~~l~~id-~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
                      ++|..+++.. +....+.+.|++.++|++++  +| ++|  +++...+.....++.....++|.+.
T Consensus        84 ~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~l--id~~~G--~i~~~~~~~~~~~~~~~~~~~w~~~  145 (146)
T 1o8x_A           84 MPWLAVPFAQSEAVQKLSKHFNVESIPTLIG--VDADSG--DVVTTRARATLVKDPEGEQFPWKDA  145 (146)
T ss_dssp             CSSEECCGGGHHHHHHHHHHTTCCSSSEEEE--EETTTC--CEEESCHHHHHTTCTTCTTTTCCCC
T ss_pred             CCceeeccchhhHHHHHHHHhCCCCCCEEEE--EECCCC--eEEEecchhHHhhCCccccCCCCCC
Confidence            9988888775 55788999999999999999  99 899  8888888888899999999999875

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.92  E-value=3.3e-24  Score=153.31  Aligned_cols=135  Identities=39%  Similarity=0.756  Sum_probs=117.5

Q ss_pred             cccce-eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhC
Q psy8729          23 KTYNI-GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG  101 (190)
Q Consensus        23 ~~~~~-~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~  101 (190)
                      ..|++ .+.+.++ ...++.+ ++++++|+||++||++|+.+.|.|+++++++++. .++.+++|++|.+.+.+++|+++
T Consensus         7 ~~p~~~~l~~~~g-~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~vv~i~~d~~~~~~~~~~~~   83 (144)
T 1o73_A            7 YLPGATNLLSKSG-EVSLGSL-VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDYYGK   83 (144)
T ss_dssp             TSCTTCCBBCTTS-CBCSGGG-TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTT
T ss_pred             hCccceEeecCCC-cCcHHHh-CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccC-CCEEEEEEeCCCCHHHHHHHHHh
Confidence            45665 7888877 6666665 7899999999999999999999999999999843 26999999999999999999999


Q ss_pred             CCCCcccCCc-hhHHHHHHHcCCCCCCeeeeeeec-CCCceEEEccccccccccCCCCCcCCCCc
Q psy8729         102 MPWPAIPYAS-ETRQSLASLYNVHGIPSLILLAVE-AGGRLDVITTEARHELSEDPDGEFFPWPP  164 (190)
Q Consensus       102 ~~~~~~~~~~-~~~~~~~~~~~v~~~P~~~l~~id-~~g~~~i~~~~~~~~~~~~~~~~~~~~~~  164 (190)
                      ++|..+++.. +....+.+.|++.++|++++  +| ++|  +++...+......+..+..|+|.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~l--id~~~G--~i~~~~~~~~~~~~~~~~~~~W~~  144 (144)
T 1o73_A           84 MPWLALPFDQRSTVSELGKTFGVESIPTLIT--INADTG--AIIGTQARTRVIEDPDGANFPWPN  144 (144)
T ss_dssp             CSSEECCTTCHHHHHHHHHHHTCCSSSEEEE--EETTTC--CEEESCHHHHHHHCTTCTTTTCCC
T ss_pred             CCceEeeccchhHHHHHHHHcCCCCCCEEEE--EECCCC--eEEecchhhHHhhCCCccCCCCCC
Confidence            9988888775 55788999999999999999  99 899  888888888888999999999964

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.89  E-value=2.9e-23  Score=148.42  Aligned_cols=120  Identities=13%  Similarity=0.215  Sum_probs=99.7

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHH---HHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIE---TYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~---l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      ..+..+|+|.+.+.+|....++.+ .+++++|+||++||++|+.++|.|++   +++++++.  ++.+++|+.|.+.+.+
T Consensus         6 ~~G~~ap~f~l~~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~--~~~vi~i~~d~~~~~~   82 (142)
T 3eur_A            6 RLGTKALNFTYTLDSGVKGTLYQF-PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAK--KLKVLSIYPDEELDEW   82 (142)
T ss_dssp             CTTSBCCCCEEEETTSCEEETTTC-CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTT--SEEEEEEECSSCHHHH
T ss_pred             cCCCccCCcEEEcCCCCEeeHHHc-CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccC--CeEEEEEEcCCCHHHH
Confidence            345678888888888877777776 68999999999999999999999999   99999875  5999999999999999


Q ss_pred             HHHHhCCCCCcccCCchhH--HHHHHHcCCCCCCeeeeeeecCCCceEEEccc
Q psy8729          96 QSYLSGMPWPAIPYASETR--QSLASLYNVHGIPSLILLAVEAGGRLDVITTE  146 (190)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~  146 (190)
                      ++|+++++. .++...|..  ..+.+.|++.++|++++  +|++|  +++...
T Consensus        83 ~~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~P~~~l--id~~G--~i~~~~  130 (142)
T 3eur_A           83 KKHRNDFAK-EWTNGYDKELVIKNKNLYDLRAIPTLYL--LDKNK--TVLLKD  130 (142)
T ss_dssp             HHHGGGSCT-TSEEEECTTCHHHHTTCSCCTTCSEEEE--ECTTC--BEEEEE
T ss_pred             HHHHHhccc-ccccccCccchhhhhhhcCCCcCCeEEE--ECCCC--cEEecC
Confidence            999998875 334444443  34788999999999999  99999  555433

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.88  E-value=2.2e-22  Score=143.40  Aligned_cols=117  Identities=15%  Similarity=0.283  Sum_probs=100.7

Q ss_pred             CCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHH---HHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIE---TYRKLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~---l~~~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      .+...|+|++.+.++....++.+ +|++++|+||++||++|+.++|.|.+   +++++++.  ++.+++|++|.+.+.++
T Consensus         3 ~G~~~p~f~l~~~~g~~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~--~~~~v~v~~d~~~~~~~   79 (142)
T 3ewl_A            3 AGMKAADFTYVTVHGDNSRMSRL-KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG--TLRVLAIYPDENREEWA   79 (142)
T ss_dssp             TTSBCCCCEEECTTCCEEEGGGC-CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHT--SEEEEEEECSSCHHHHH
T ss_pred             CCCcCCCCEEECCCCCEEEhhhc-CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccC--CeEEEEEEecCCHHHHH
Confidence            45678889999888877777776 79999999999999999999999988   99999875  49999999999999999


Q ss_pred             HHHhCCCCCcccCCchhHHHHHH--HcCCCCCCeeeeeeecCCCceEEEc
Q psy8729          97 SYLSGMPWPAIPYASETRQSLAS--LYNVHGIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~P~~~l~~id~~g~~~i~~  144 (190)
                      +|++++++ .++...|....+..  .|++.++|++++  +|++|  +++.
T Consensus        80 ~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~P~~~l--id~~G--~i~~  124 (142)
T 3ewl_A           80 TKAVYMPQ-GWIVGWNKAGDIRTRQLYDIRATPTIYL--LDGRK--RVIL  124 (142)
T ss_dssp             HHHTTSCT-TCEEEECTTCHHHHTTCSCCCSSSEEEE--ECTTC--BEEE
T ss_pred             HHHHHcCC-CcceeeCCccchhhHHHcCCCCCCeEEE--ECCCC--CEEe
Confidence            99999986 56666666666665  899999999999  99999  5555

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.88  E-value=1.3e-22  Score=145.14  Aligned_cols=119  Identities=17%  Similarity=0.121  Sum_probs=93.9

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      ..+...|+|++ +.++....++.+ +|++++|+||++||++|+.++|.|++++++|+++  ++.+++|++|.+.+.+++|
T Consensus         8 ~~G~~~P~f~l-~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~   83 (143)
T 4fo5_A            8 NPGDLAPRIEF-LGNDAKASFHNQ-LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD--KIAMCSISMDEKESIFTET   83 (143)
T ss_dssp             STTSBCCCCCC------CCCSCCS-SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT--TEEEEEEECCSCHHHHHHH
T ss_pred             CCcccCCceEE-cCCCCEEEHHHh-CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC--CEEEEEEEccCCHHHHHHH
Confidence            34556788888 677776666665 7899999999999999999999999999999865  5999999999999999999


Q ss_pred             HhCCCCCcccCCch---hHHHHHHHcCCCCCCeeeeeeecCCCceEEEcc
Q psy8729          99 LSGMPWPAIPYASE---TRQSLASLYNVHGIPSLILLAVEAGGRLDVITT  145 (190)
Q Consensus        99 ~~~~~~~~~~~~~~---~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~  145 (190)
                      +++++....+...+   ....+.+.|++.++|++++  ||++|  +++..
T Consensus        84 ~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~l--id~~G--~i~~~  129 (143)
T 4fo5_A           84 VKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFL--INDEG--VIIAA  129 (143)
T ss_dssp             HHHHTCCGGGEEECTTGGGSHHHHHTTGGGCCCEEE--ECTTS--BEEEE
T ss_pred             HHHhCCCCceeeecccccchHHHHHcCCCCCCcEEE--ECCCC--EEEEc
Confidence            99877533133222   2568999999999999999  99999  55544

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.87  E-value=1.9e-21  Score=140.88  Aligned_cols=117  Identities=25%  Similarity=0.354  Sum_probs=97.0

Q ss_pred             CCCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          18 SKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      ...+...|+|++.+.+|....++.+ +|++++|+||++||++|+.++|.|++++++|+++  ++.+++|++|...+.++.
T Consensus         9 ~~~g~~~p~f~l~~~~G~~~~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~vv~i~~d~~~~~~~~   85 (152)
T 2lrt_A            9 KIKEASIIDIQLKDLKGNTRSLTDL-KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ--GFEIYQISLDGDEHFWKT   85 (152)
T ss_dssp             SSCTTCSCCCCEEBTTSCEECTTTG-GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEECSCCHHHHHH
T ss_pred             hccCCCCCCeEEEcCCCCEEeHHHh-CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC--CeEEEEEEccCCHHHHHH
Confidence            3345567889998888877767666 7899999999999999999999999999999876  499999999999888999


Q ss_pred             HHhCCCCCcccCCchhHH---HHHHHcCCCCCCeeeeeeecCCCceEEEc
Q psy8729          98 YLSGMPWPAIPYASETRQ---SLASLYNVHGIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~P~~~l~~id~~g~~~i~~  144 (190)
                      |..+..|   +...|...   .+.+.|++.++|++++  +|++|  +++.
T Consensus        86 ~~~~~~~---~~~~d~~~~~~~~~~~~~v~~~P~~~l--id~~G--~i~~  128 (152)
T 2lrt_A           86 SADNLPW---VCVRDANGAYSSYISLYNVTNLPSVFL--VNRNN--ELSA  128 (152)
T ss_dssp             HHTTCSS---EEEECSSGGGCHHHHHHTCCSCSEEEE--EETTT--EEEE
T ss_pred             HHhCCCc---eEEECCCCcchHHHHHcCcccCceEEE--ECCCC--eEEE
Confidence            9877544   44444433   4899999999999999  99999  5444

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.87  E-value=8.1e-22  Score=140.94  Aligned_cols=117  Identities=15%  Similarity=0.276  Sum_probs=102.1

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      ..+...|+|.+.+.++....++.+ ++++++|+||++||++|+.+.|.|++++++++++  ++.+++|++|.+.+.+++|
T Consensus         6 ~~G~~~p~~~l~~~~g~~~~l~~~-~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~~~~~~~~~   82 (148)
T 3hcz_A            6 LLGKKAPNLYMTDTTGTYRYLYDV-QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK--GIQVYAANIERKDEEWLKF   82 (148)
T ss_dssp             CTTSBCCCCCCBCTTSCBCCGGGC-CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG--TEEEEEEECCSSSHHHHHH
T ss_pred             CCCCcCCceEEecCCCCEEEhHHc-CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC--CEEEEEEEecCCHHHHHHH
Confidence            345678889998888777777665 7899999999999999999999999999999876  4999999999888899999


Q ss_pred             HhCCCCCcccCCchhHHH--HHHHcCCCCCCeeeeeeecCCCce
Q psy8729          99 LSGMPWPAIPYASETRQS--LASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      ++++++..++...|....  +.+.|++.++|++++  +|++|++
T Consensus        83 ~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~l--id~~G~i  124 (148)
T 3hcz_A           83 IRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYV--LDKNKVI  124 (148)
T ss_dssp             HHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEE--ECTTCBE
T ss_pred             HHHcCCCCceEEeccccchhHHHhcCcCCCCEEEE--ECCCCcE
Confidence            999987667777776656  999999999999999  9999944

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.86  E-value=2.1e-21  Score=140.16  Aligned_cols=118  Identities=21%  Similarity=0.278  Sum_probs=100.4

Q ss_pred             CCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      .+...|+|++.+.+|....++.+ ++++++|+||++||++|+.+.|.|+++++++.++  ++.+++|++|.+.+.+++|+
T Consensus         5 ~g~~~p~f~l~~~~G~~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~~~~   81 (152)
T 2lrn_A            5 TGSVAPAITGIDLKGNSVSLNDF-KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK--GFTIYGVSTDRREEDWKKAI   81 (152)
T ss_dssp             TTEECCCCEEECSSSCEEESGGG-TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTT--TEEEEEEECCSCHHHHHHHH
T ss_pred             CCCcCCCceeEcCCCCEEeHHHc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccC--CeEEEEEEccCCHHHHHHHH
Confidence            34457788888888877777776 7899999999999999999999999999999875  49999999999899999999


Q ss_pred             hCCCCCcccCCchh---HHHHHHHcCCCCCCeeeeeeecCCCceEEEcc
Q psy8729         100 SGMPWPAIPYASET---RQSLASLYNVHGIPSLILLAVEAGGRLDVITT  145 (190)
Q Consensus       100 ~~~~~~~~~~~~~~---~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~  145 (190)
                      ++++. .++...|.   ...+.+.|++.++|++++  +|++|  +++..
T Consensus        82 ~~~~~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~l--id~~G--~i~~~  125 (152)
T 2lrn_A           82 EEDKS-YWNQVLLQKDDVKDVLESYCIVGFPHIIL--VDPEG--KIVAK  125 (152)
T ss_dssp             HHHTC-CSEEEEECHHHHHHHHHHTTCCSSCEEEE--ECTTS--EEEEE
T ss_pred             HHhCC-CCeEEecccchhHHHHHHhCCCcCCeEEE--ECCCC--eEEEe
Confidence            98775 35555555   688999999999999999  99999  55543

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=2.1e-21  Score=139.87  Aligned_cols=116  Identities=18%  Similarity=0.239  Sum_probs=98.5

Q ss_pred             CCCCcccceeccCCCccceeee--eccCCcEEEEEEEcCCChh--hhhhhHHHHHHHHHH-hhcCCcEEEEEeeCCCCHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLS--YIESCQVIGLYFSAHWCPP--CKAFTPQLIETYRKL-KEDGYQFEIIFVSSDRSES   93 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~--~~~~~k~vlv~F~a~wC~~--C~~~~~~l~~l~~~~-~~~g~~~~ii~i~~d~~~~   93 (190)
                      ..+...|+|.+.+.+|....++  .+ +|++++|+||++||++  |+.++|.|++++++| ++.  ++.+++|++|.+.+
T Consensus         6 ~~G~~~p~f~l~~~~g~~~~l~~~~~-~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~--~~~~v~v~~d~~~~   82 (150)
T 3fw2_A            6 EIGKYAPFFSLPNAKGEKITRSSDAF-KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK--YIGMLGISLDVDKQ   82 (150)
T ss_dssp             STTSBCCCCCEEBTTCCEECTTSTTT-TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCS--SEEEEEEECCSCHH
T ss_pred             cCCCcCCccEeECCCCCEEecchhhh-CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCC--CeEEEEEEcCCCHH
Confidence            3456778888988888777776  65 7899999999999999  999999999999999 554  59999999999999


Q ss_pred             HHHHHHhCCCCCcccCCchh---HHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          94 SYQSYLSGMPWPAIPYASET---RQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      .+++|+++++. .++...|.   ...+.+.|++.++|++++  +|++|++
T Consensus        83 ~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~l--id~~G~i  129 (150)
T 3fw2_A           83 QWKDAIKRDTL-DWEQVCDFGGLNSEVAKQYSIYKIPANIL--LSSDGKI  129 (150)
T ss_dssp             HHHHHHHHTTC-CSEEECCSCGGGCHHHHHTTCCSSSEEEE--ECTTSBE
T ss_pred             HHHHHHHHhCC-CceEEEcCcccchHHHHHcCCCccCeEEE--ECCCCEE
Confidence            99999998875 34444443   679999999999999999  9999944

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.86  E-value=2.3e-21  Score=138.51  Aligned_cols=116  Identities=17%  Similarity=0.268  Sum_probs=97.5

Q ss_pred             CCCCcccceeccCCCccceeee--eccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHH-hhcCCcEEEEEeeCCCCHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLS--YIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKL-KEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~--~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~-~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      ..+...|+|.+.+.++....++  .+ ++++++|+||++||++|+.++|.|.++++++ .+.  ++.+++|++|.+.+.+
T Consensus         6 ~~g~~~p~~~l~~~~g~~~~l~~~~~-~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~~v~v~~d~~~~~~   82 (148)
T 3fkf_A            6 TVGKSAPYFSLPNEKGEKLSRSAERF-RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNK--NFAMLGISLDIDREAW   82 (148)
T ss_dssp             CTTSBCCCCCEEBTTSCEECTTSTTT-TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCT--TEEEEEEECCSCHHHH
T ss_pred             cCCCcCCCeEeeCCCCCEEecccccc-CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCC--CeEEEEEECCCCHHHH
Confidence            3455678888888877766666  55 7899999999999999999999999999999 654  5999999999999999


Q ss_pred             HHHHhCCCCCcccCCchh---HHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          96 QSYLSGMPWPAIPYASET---RQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      ++|++++++ .++...+.   ...+.+.|++.++|++++  +|++|++
T Consensus        83 ~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~l--id~~G~i  127 (148)
T 3fkf_A           83 ETAIKKDTL-SWDQVCDFTGLSSETAKQYAILTLPTNIL--LSPTGKI  127 (148)
T ss_dssp             HHHHHHTTC-CSEEECCSCGGGCHHHHHTTCCSSSEEEE--ECTTSBE
T ss_pred             HHHHHHcCC-CceEEEccCCcchHHHHhcCCCCcCEEEE--ECCCCeE
Confidence            999998875 34444444   679999999999999999  9999944

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.85  E-value=9.3e-21  Score=136.34  Aligned_cols=115  Identities=25%  Similarity=0.468  Sum_probs=100.0

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      ..+...|+|.+.+ ++....++.+ ++++++|+||++||++|+...|.|.++++++++.|  +.+++|++|.+.+.++.|
T Consensus         4 ~~G~~~P~f~l~~-~g~~~~l~~~-~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~   79 (152)
T 3gl3_A            4 DKGDKAPDFALPG-KTGVVKLSDK-TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGDAMKF   79 (152)
T ss_dssp             CTTSBCCCCEEEB-SSSEEEGGGG-TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSHHHHHHH
T ss_pred             CCCCcCCceEeeC-CCCeEeHHHh-CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEECCCCHHHHHHH
Confidence            3455678888888 6666666665 78999999999999999999999999999998764  999999999999999999


Q ss_pred             HhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          99 LSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      ++++++ .+++..|....+.+.|++.++|++++  +|++|++
T Consensus        80 ~~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~G~i  118 (152)
T 3gl3_A           80 LAQVPA-EFTVAFDPKGQTPRLYGVKGMPTSFL--IDRNGKV  118 (152)
T ss_dssp             HHHSCC-CSEEEECTTCHHHHHTTCCSSSEEEE--ECTTSBE
T ss_pred             HHHcCC-CCceeECCcchhHHHcCCCCCCeEEE--ECCCCCE
Confidence            999886 56677777889999999999999999  9999954

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.85  E-value=5.9e-21  Score=137.45  Aligned_cols=114  Identities=22%  Similarity=0.426  Sum_probs=99.6

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS  100 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~  100 (190)
                      +...|+|.+.+.++....++.+ ++++++|+||++||++|+.+.|.|+++++++.+.  ++.++.|++|.+.+.++.|++
T Consensus         3 G~~~p~~~l~~~~g~~~~l~~~-~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~v~~d~~~~~~~~~~~   79 (151)
T 2f9s_A            3 GSDAPNFVLEDTNGKRIELSDL-KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ--GVEIVAVNVGESKIAVHNFMK   79 (151)
T ss_dssp             CEECCCCEEECTTCCEEEGGGG-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCCHHHHHHHHH
T ss_pred             CCcCCcceeEcCCCCEEEHHHc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEECCCCHHHHHHHHH
Confidence            3456788888888777777666 7899999999999999999999999999999875  499999999988999999999


Q ss_pred             CCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         101 GMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      ++++ .+++..|.+..+.+.|++.++|++++  +|++|++
T Consensus        80 ~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~G~i  116 (151)
T 2f9s_A           80 SYGV-NFPVVLDTDRQVLDAYDVSPLPTTFL--INPEGKV  116 (151)
T ss_dssp             HHTC-CSCEEEETTSHHHHHTTCCSSCEEEE--ECTTSEE
T ss_pred             HcCC-CceEEECCchHHHHhcCCCCCCeEEE--ECCCCcE
Confidence            8886 46777777789999999999999999  9999944

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.85  E-value=3.6e-21  Score=139.46  Aligned_cols=114  Identities=20%  Similarity=0.345  Sum_probs=93.4

Q ss_pred             CCcccceeccC--CCccceeeeeccCCcEEEEEEEcCCChhhhhh-hHHHHHHHHHHhhcCCcEEEEEeeCC------CC
Q psy8729          21 AKKTYNIGLAE--GTVTTKVLSYIESCQVIGLYFSAHWCPPCKAF-TPQLIETYRKLKEDGYQFEIIFVSSD------RS   91 (190)
Q Consensus        21 ~~~~~~~~l~~--~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~-~~~l~~l~~~~~~~g~~~~ii~i~~d------~~   91 (190)
                      +...|+|++.+  .++....++.+ +|++++|+||++||++|+.+ +|.|++++++|+++  ++.+++|++|      ++
T Consensus         3 g~~aP~f~l~~~~~~g~~~~l~~~-~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~   79 (158)
T 3eyt_A            3 AMKAPELQIQQWFNSATDLTLADL-RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED--KVAVLGLHTVFEHHEAMT   79 (158)
T ss_dssp             CEECCCCCEEEEESCSSCCCTGGG-TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT--TEEEEEEECCCSCGGGSC
T ss_pred             CCcCCCceehhhhcCCCccCHHHh-CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcC--CEEEEEEEecccccccCC
Confidence            44567787776  34555556665 79999999999999999996 99999999999865  4999999984      57


Q ss_pred             HHHHHHHHhCCCCCcccCCchhHH-----HHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          92 ESSYQSYLSGMPWPAIPYASETRQ-----SLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      .+.++.|++++++. ++...|...     .+.+.|++.++|++++  +|++|++
T Consensus        80 ~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~v~~~P~~~l--id~~G~i  130 (158)
T 3eyt_A           80 PISLKAFLHEYRIK-FPVGVDQPGDGAMPRTMAAYQMRGTPSLLL--IDKAGDL  130 (158)
T ss_dssp             HHHHHHHHHHTTCC-SCEEEECCCSSSSCHHHHHTTCCSSSEEEE--ECTTSEE
T ss_pred             HHHHHHHHHHcCCC-ceEEEcCccchhhHHHHHHcCCCCCCEEEE--ECCCCCE
Confidence            88999999998864 555555544     6899999999999999  9999944

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.84  E-value=8.5e-21  Score=138.59  Aligned_cols=117  Identities=20%  Similarity=0.197  Sum_probs=100.9

Q ss_pred             CCCcccceeccCCCccceeeeeccCCcE-EEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLSYIESCQV-IGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~k~-vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      .+...|+|.+.+.+|....++.+ .|++ ++|+|| ++||++|+..+|.|++++++|+++  ++.+++|+.| +.+.+++
T Consensus         4 ~G~~~P~f~l~~~~G~~~~l~~~-~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~vs~d-~~~~~~~   79 (161)
T 3drn_A            4 VGDKAPLFEGIADNGEKISLSDY-IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY--DVVVIGVSSD-DINSHKR   79 (161)
T ss_dssp             TTSBCCCCEEEETTSCEEEGGGT-TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT--CEEEEEEESC-CHHHHHH
T ss_pred             CCCcCCCeEeecCCCCEEEHHHh-cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEeCC-CHHHHHH
Confidence            34567888888888877777776 6676 999999 999999999999999999999876  4999999998 6889999


Q ss_pred             HHhCCCCCcccCCchhHHHHHHHcCCCC----CCeeeeeeecCCCceEEE
Q psy8729          98 YLSGMPWPAIPYASETRQSLASLYNVHG----IPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~P~~~l~~id~~g~~~i~  143 (190)
                      |++++++. +++..|.+..+.+.|++.+    +|++++  ||++|++...
T Consensus        80 ~~~~~~~~-~~~~~d~~~~~~~~~~v~~~~~~~P~~~l--id~~G~i~~~  126 (161)
T 3drn_A           80 FKEKYKLP-FILVSDPDKKIRELYGAKGFILPARITFV--IDKKGIIRHI  126 (161)
T ss_dssp             HHHHTTCC-SEEEECTTSHHHHHTTCCCSSSCCCEEEE--ECTTSBEEEE
T ss_pred             HHHHhCCC-ceEEECCcHHHHHHcCCCCcCcccceEEE--ECCCCEEEEE
Confidence            99999864 7777888889999999999    999999  9999955333

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.84  E-value=6.4e-21  Score=137.17  Aligned_cols=117  Identities=21%  Similarity=0.400  Sum_probs=100.6

Q ss_pred             CCccc-ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729          21 AKKTY-NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        21 ~~~~~-~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      +...| +|.+.+.++....++.+ .+++++|+||++||++|+...|.|+++++++++.  ++.+++|++|.+.+.+++|+
T Consensus         6 G~~~p~~f~l~~~~g~~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~~~~~~~~~~   82 (152)
T 2lja_A            6 GNPSAASFSYPDINGKTVSLADL-KGKYIYIDVWATWCGPCRGELPALKELEEKYAGK--DIHFVSLSCDKNKKAWENMV   82 (152)
T ss_dssp             TCCCSSSCEEEETTTEEEESTTT-TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTS--SEEEEEEECCSCHHHHHHHH
T ss_pred             CCCCCcccEeecCCCCEeeHHHc-CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccC--CeEEEEEEccCcHHHHHHHH
Confidence            44566 88888887777666665 7899999999999999999999999999998764  59999999999889999999


Q ss_pred             hCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEc
Q psy8729         100 SGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~  144 (190)
                      +++++...++..+....+.+.|++.++|++++  +|++|  +++.
T Consensus        83 ~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~G--~i~~  123 (152)
T 2lja_A           83 TKDQLKGIQLHMGTDRTFMDAYLINGIPRFIL--LDRDG--KIIS  123 (152)
T ss_dssp             HHHTCCSEEEECSSCTHHHHHTTCCSSCCEEE--ECTTS--CEEE
T ss_pred             HhcCCCCceeecCcchhHHHHcCcCCCCEEEE--ECCCC--eEEE
Confidence            98887766777777789999999999999999  99999  4444

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.84  E-value=5.3e-21  Score=138.76  Aligned_cols=115  Identities=19%  Similarity=0.313  Sum_probs=95.0

Q ss_pred             CCcccceeccC-CCccceeeeeccCCcEEEEEEEcCCChhhhhh-hHHHHHHHHHHhhcCCcEEEEEeeCC------CCH
Q psy8729          21 AKKTYNIGLAE-GTVTTKVLSYIESCQVIGLYFSAHWCPPCKAF-TPQLIETYRKLKEDGYQFEIIFVSSD------RSE   92 (190)
Q Consensus        21 ~~~~~~~~l~~-~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~-~~~l~~l~~~~~~~g~~~~ii~i~~d------~~~   92 (190)
                      +.+.|+|.+.+ .+|....++.+ +|++++|+||++||++|+.+ +|.|++++++|+++  ++.+++|+++      ++.
T Consensus         6 g~~~p~~~~~~~~~g~~~~l~~~-~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~   82 (160)
T 3lor_A            6 NAPLLELDVQEWVNHEGLSNEDL-RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES--QVQVIGLHSVFEHHDVMTP   82 (160)
T ss_dssp             TCCBCCCCEEEESSSCCCCHHHH-TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT--TEEEEEEECCCSCGGGSCH
T ss_pred             CCcCCCcccccccCCCccCHHHh-CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC--CcEEEEEeccccccccCCH
Confidence            45677888776 55555556665 79999999999999999995 99999999999876  4999999984      678


Q ss_pred             HHHHHHHhCCCCCcccCCchhHHH------HHHHcCCCCCCeeeeeeecCCCceE
Q psy8729          93 SSYQSYLSGMPWPAIPYASETRQS------LASLYNVHGIPSLILLAVEAGGRLD  141 (190)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~P~~~l~~id~~g~~~  141 (190)
                      +.++.|++++++. ++...|....      +.+.|++.++|++++  +|++|++.
T Consensus        83 ~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~l--id~~G~i~  134 (160)
T 3lor_A           83 EALKVFIDEFGIK-FPVAVDMPREGQRIPSTMKKYRLEGTPSIIL--ADRKGRIR  134 (160)
T ss_dssp             HHHHHHHHHTTCC-SCEEEECCCTTCSSCHHHHHTTCCSSSEEEE--ECTTSBEE
T ss_pred             HHHHHHHHHcCCC-CcEEECCccccchhhhHHHhcccCccceEEE--ECCCCcEE
Confidence            9999999998864 5666665555      999999999999999  99999543

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.75  E-value=9.3e-23  Score=145.32  Aligned_cols=124  Identities=40%  Similarity=0.766  Sum_probs=103.2

Q ss_pred             cccceeccCCCccceeeee-ccCCc-EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729          23 KTYNIGLAEGTVTTKVLSY-IESCQ-VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS  100 (190)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~-~~~~k-~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~  100 (190)
                      ..|++++.+.+|....++. + +++ +++|+||++||++|+.+.|.|+++++++++.+.++.+++|++|.+.+.+++|++
T Consensus         3 ~~p~~~l~~~~g~~~~l~~~~-~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~   81 (143)
T 2lus_A            3 FIQGIKLVKKNRCEVNANEAL-KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMM   81 (143)
Confidence            3577888887777666666 5 677 999999999999999999999999999965444699999999988889999999


Q ss_pred             CCC--CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEcccccccc
Q psy8729         101 GMP--WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHEL  151 (190)
Q Consensus       101 ~~~--~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~~~~~~  151 (190)
                      +++  |..+++..+....+.+.|++.++|++++  +|++|  +++...+..+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l--id~~G--~i~~~~~~~~~  130 (143)
T 2lus_A           82 ESHGDWLAIPYRSGPASNVTAKYGITGIPALVI--VKKDG--TLISMNGRGEV  130 (143)
Confidence            875  5667777777788999999999999999  99999  77776665433

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.84  E-value=1.6e-20  Score=131.88  Aligned_cols=111  Identities=22%  Similarity=0.411  Sum_probs=96.4

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEee-----CCCCHHHHHHH
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVS-----SDRSESSYQSY   98 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~-----~d~~~~~~~~~   98 (190)
                      .|+|.+.+.++....++.+ ++++++|+||++||++|+...+.++++++++..   ++.++.|.     .+.+.+.+++|
T Consensus         2 ~p~f~l~~~~g~~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~v~i~~~~~~~~~~~~~~~~~   77 (138)
T 4evm_A            2 VADFELMGVDGKTYRLSDY-KGKKVYLKFWASWCSICLASLPDTDEIAKEAGD---DYVVLTVVSPGHKGEQSEADFKNW   77 (138)
T ss_dssp             CCCCEEEBTTSCEEEGGGG-TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT---TEEEEEEECTTSTTCCCHHHHHHH
T ss_pred             CCcceeECCCCCEEEHHHh-CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC---CcEEEEEEcCCCCchhhHHHHHHH
Confidence            5778888888777777666 789999999999999999999999999988543   48888883     45678999999


Q ss_pred             HhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          99 LSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      .+++++..+++..+.+..+.+.|++.++|++++  +|++|++
T Consensus        78 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~G~i  117 (138)
T 4evm_A           78 YKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAF--IDKEGKL  117 (138)
T ss_dssp             HTTCCCTTCCEEECTTCHHHHHTTCCSSSEEEE--ECTTCCE
T ss_pred             HhhcCCCCeeEEECcchHHHHHcCcccCCeEEE--ECCCCcE
Confidence            999998788888888889999999999999999  9999954

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.84  E-value=1.1e-20  Score=132.80  Aligned_cols=113  Identities=15%  Similarity=0.229  Sum_probs=99.0

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS  100 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~  100 (190)
                      +...|++.+.+.++....+..+ ++++++|+||++||++|+...|.|++++++++    ++.++.|+.|.+.+.+++|++
T Consensus         2 ~~~~p~~~~~~~~g~~~~l~~~-~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~   76 (136)
T 1zzo_A            2 VPAQLQFSAKTLDGHDFHGESL-LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP----EVTFVGVAGLDQVPAMQEFVN   76 (136)
T ss_dssp             CCGGGCCEEEBTTSCEEEGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHH
T ss_pred             CCCCCCcccccCCCCEeeHHHh-CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC----CeEEEEEeCCCCHHHHHHHHH
Confidence            3457888888888776666665 78999999999999999999999999999886    388999999999999999999


Q ss_pred             CCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         101 GMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      ++++..++...+....+.+.|++.++|++++  +|++|++
T Consensus        77 ~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~--id~~g~i  114 (136)
T 1zzo_A           77 KYPVKTFTQLADTDGSVWANFGVTQQPAYAF--VDPHGNV  114 (136)
T ss_dssp             HTTCTTSEEEECTTCHHHHHTTCCSSSEEEE--ECTTCCE
T ss_pred             HcCCCceEEEEcCCcHHHHHcCCCCCceEEE--ECCCCCE
Confidence            9987677777777889999999999999999  9999954

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.84  E-value=1.6e-20  Score=133.62  Aligned_cols=115  Identities=19%  Similarity=0.336  Sum_probs=98.6

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC---CHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR---SESSY   95 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~---~~~~~   95 (190)
                      ..+...|++.+.+.++....++.  ++++++|+||++||++|+.+.|.|++++++++..  ++.++.|++|.   +.+.+
T Consensus        10 ~~g~~~p~~~l~~~~g~~~~l~~--~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~   85 (145)
T 3erw_A           10 KQPAVPAVFLMKTIEGEDISIPN--KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSD--SVKLVTVNLVNSEQNQQVV   85 (145)
T ss_dssp             --CCSCCEEEEECTTSCEEEESC--TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCS--SEEEEEEECGGGSSCHHHH
T ss_pred             cCCCcCCCceeecCCCCEEeHHH--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCC--CEEEEEEEccCCcCCHHHH
Confidence            34556788999988877666666  7999999999999999999999999999998754  49999999975   88999


Q ss_pred             HHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          96 QSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      +.|.+++++ .+++..+....+.+.|++.++|++++  +|++|++
T Consensus        86 ~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~G~i  127 (145)
T 3erw_A           86 EDFIKANKL-TFPIVLDSKGELMKEYHIITIPTSFL--LNEKGEI  127 (145)
T ss_dssp             HHHHHHTTC-CSCEEECSSSHHHHHTTCCEESEEEE--ECTTCCE
T ss_pred             HHHHHHcCC-ceeEEEcCchhHHHhcCcCccCeEEE--EcCCCcE
Confidence            999998876 46777777889999999999999999  9999954

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.84  E-value=3e-20  Score=133.91  Aligned_cols=115  Identities=20%  Similarity=0.451  Sum_probs=100.2

Q ss_pred             CCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCC-HHHHHHH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRS-ESSYQSY   98 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~-~~~~~~~   98 (190)
                      .+.+.|+|.+.+.++....++.+ ++++++|+||++||++|+..+|.|+++++++++.  ++.+++|+.|.+ .+.++.|
T Consensus         4 ~G~~~p~~~l~~~~g~~~~l~~~-~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~   80 (154)
T 3kcm_A            4 EENPAPDFTLNTLNGEVVKLSDL-KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGK--PFRMLCVSIDEGGKVAVEEF   80 (154)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGG-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTS--SEEEEEEECCTTHHHHHHHH
T ss_pred             CCCCCCCeEEEcCCCCEEehhhc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEEcCCcchHHHHHH
Confidence            35567889998888877777666 7899999999999999999999999999999875  599999999977 7889999


Q ss_pred             HhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          99 LSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      ++++++ .+++..|.+..+.+.|++.++|++++  +|++|++
T Consensus        81 ~~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~G~i  119 (154)
T 3kcm_A           81 FRKTGF-TLPVLLDADKRVGKLYGTTGVPETFV--IDRHGVI  119 (154)
T ss_dssp             HHHHCC-CCCEEECTTCHHHHHHTCCSBCEEEE--ECTTSBE
T ss_pred             HHHcCC-CeeEEecCchHHHHHhCCCCCCeEEE--ECCCCcE
Confidence            998875 46777777889999999999999999  9999954

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.83  E-value=1.2e-20  Score=144.69  Aligned_cols=121  Identities=12%  Similarity=0.203  Sum_probs=104.0

Q ss_pred             CCCCCCcccceeccCCCccceeeeeccCCc-EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC------
Q psy8729          17 GSKGAKKTYNIGLAEGTVTTKVLSYIESCQ-VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD------   89 (190)
Q Consensus        17 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k-~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d------   89 (190)
                      ....+...|+|++.+.+|....++.+ .++ ++||+||++||++|+.++|.|++++++|+++  ++.+++|++|      
T Consensus        31 ~l~~G~~aP~f~l~~~~G~~v~l~~~-~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Vs~d~~~~~~  107 (218)
T 3u5r_E           31 SITLGTRAADFVLPDAGGNLFTLAEF-KDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQ--GLAVVAINSNDAQAFP  107 (218)
T ss_dssp             CCCTTCBCCCCCEECTTCCEECGGGG-TTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTT--TEEEEEEECSCTTTCG
T ss_pred             cCCCCCcCCCcEeECCCCCEEeHHHh-CCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhC--CcEEEEEECCcccccc
Confidence            34456678999999988887777776 566 6999999999999999999999999999876  4999999996      


Q ss_pred             -CCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEcc
Q psy8729          90 -RSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITT  145 (190)
Q Consensus        90 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~  145 (190)
                       ++.+.+++|++++++ .+++..|....+.+.|++.++|++++  ||++|  ++++.
T Consensus       108 ~d~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~v~~~P~~~l--iD~~G--~i~~~  159 (218)
T 3u5r_E          108 EETLERVGAEVKAYGY-GFPYLKDASQSVAKAYGAACTPDFFL--YDRER--RLVYH  159 (218)
T ss_dssp             GGSHHHHHHHHHHHTC-CSCEEECTTCHHHHHHTCCEESEEEE--ECTTC--BEEEE
T ss_pred             cCCHHHHHHHHHHhCC-CccEEECCccHHHHHcCCCCCCeEEE--ECCCC--cEEEe
Confidence             678899999998885 67777788889999999999999999  99999  55543

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.83  E-value=7.5e-20  Score=133.16  Aligned_cols=116  Identities=16%  Similarity=0.348  Sum_probs=97.4

Q ss_pred             CCCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          18 SKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      ...+...|+|.+.+.++....++.+ +++++||+||++||++|+.+.|.|+++++++++.  ++.++.|++|.+.+.+++
T Consensus         8 ~~~g~~~p~~~l~~~~g~~~~l~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~v~~v~v~~d~~~~~~~~   84 (165)
T 3or5_A            8 DARPTPAPSFSGVTVDGKPFSSASL-KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASR--GFTFVGIAVNEQLPNVKN   84 (165)
T ss_dssp             CCCCCBCCCCEEECTTSCEEEGGGG-TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT--TEEEEEEECSCCHHHHHH
T ss_pred             hcCCCCCCCceeeCCCCCEechhHc-CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC--CeEEEEEECCCCHHHHHH
Confidence            3445677889998888777777666 7899999999999999999999999999999875  499999999999999999


Q ss_pred             HHhCCCCCcccCCchhHHHHHHHc------CCCCCCeeeeeeecCCCce
Q psy8729          98 YLSGMPWPAIPYASETRQSLASLY------NVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~P~~~l~~id~~g~~  140 (190)
                      |++++++ .++...+.. .+.+.|      ++.++|++++  +|++|++
T Consensus        85 ~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~l--id~~G~i  129 (165)
T 3or5_A           85 YMKTQGI-IYPVMMATP-ELIRAFNGYIDGGITGIPTSFV--IDASGNV  129 (165)
T ss_dssp             HHHHHTC-CSCEEECCH-HHHHHHHTTSTTCSCSSSEEEE--ECTTSBE
T ss_pred             HHHHcCC-CCceEecCH-HHHHHHhhhhccCCCCCCeEEE--ECCCCcE
Confidence            9998875 345554544 777777      8999999999  9999954

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.83  E-value=1.1e-20  Score=138.15  Aligned_cols=113  Identities=18%  Similarity=0.357  Sum_probs=99.0

Q ss_pred             CcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC------------
Q psy8729          22 KKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD------------   89 (190)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d------------   89 (190)
                      ...|+|.+.+.++....++.+ +++++||+||++||++|+.++|.|.+++++++    ++.++.|++|            
T Consensus        15 ~~~p~~~l~~~~g~~~~l~~~-~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~----~v~vv~i~~d~~~~~~~~~~~~   89 (165)
T 3ha9_A           15 EREASFSLTTIDGEVISLNNV-GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR----EISVIAIDFWTAEALKALGLNK   89 (165)
T ss_dssp             HHHHCCCEEBTTSCEECGGGC-CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT----TEEEEEEECCSHHHHHHHTCCS
T ss_pred             CcCCCCEeecCCCCEeeHHHh-CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC----CcEEEEEEeccccccccccccc
Confidence            356778888888777766665 78999999999999999999999999999986    3999999999            


Q ss_pred             ------CCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEc
Q psy8729          90 ------RSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        90 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~  144 (190)
                            .+.+.+++|++++++..+++..+ +..+.+.|++.++|++++  +|++|  +++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~~~l--id~~G--~i~~  145 (165)
T 3ha9_A           90 PGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDYIVI--MDKSS--NVLY  145 (165)
T ss_dssp             TTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSEEEE--EETTC--CEEE
T ss_pred             ccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceEEEE--EcCCC--cEEE
Confidence                  78999999999998767777777 889999999999999999  99999  4444

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.83  E-value=2.5e-20  Score=138.19  Aligned_cols=114  Identities=16%  Similarity=0.208  Sum_probs=95.4

Q ss_pred             CCCCcccceeccCCCc--cceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          19 KGAKKTYNIGLAEGTV--TTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~--~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      ..+...|+|++.+.++  ....++.+ .|++++|+||++||++|+.++|.|++++++      ++.+++|+++++.+.++
T Consensus        31 ~~G~~~P~f~l~~~~g~~~~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~l~~~------~v~vv~vs~~d~~~~~~  103 (176)
T 3kh7_A           31 LIGKPFPAFDLPSVQDPARRLTEADL-KGKPALVNVWGTWCPSCRVEHPELTRLAEQ------GVVIYGINYKDDNAAAI  103 (176)
T ss_dssp             TTTSBCCCCEEEBSSCTTSEEEGGGG-CSSCEEEEEECTTCHHHHHHHHHHHHHHHT------TCEEEEEEESCCHHHHH
T ss_pred             ccCCcCCCcEecccCCCCceecHHHh-CCCEEEEEEECCcCHHHHHHHHHHHHHHHC------CCEEEEEeCCCCHHHHH
Confidence            3456778888888776  44445555 689999999999999999999999988775      28899999999999999


Q ss_pred             HHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceE
Q psy8729          97 SYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLD  141 (190)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~  141 (190)
                      +|++++++....+..|.+..+.+.|++.++|++++  ||++|++.
T Consensus       104 ~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~G~i~  146 (176)
T 3kh7_A          104 KWLNELHNPYLLSISDADGTLGLDLGVYGAPETYL--IDKQGIIR  146 (176)
T ss_dssp             HHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEE--ECTTCBEE
T ss_pred             HHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEE--ECCCCeEE
Confidence            99999987555456677889999999999999999  99999543

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.83  E-value=2.2e-20  Score=131.57  Aligned_cols=111  Identities=16%  Similarity=0.243  Sum_probs=96.7

Q ss_pred             cccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC
Q psy8729          23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM  102 (190)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~  102 (190)
                      ..|++.+.+.++....+..+ ++++++|.||++||++|+...|.+++++++++    ++.++.|+.+.+.+.+++|++++
T Consensus         3 ~~p~~~l~~~~g~~~~l~~~-~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~   77 (136)
T 1lu4_A            3 ERLQFTATTLSGAPFDGASL-QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP----AVTFVGIATRADVGAMQSFVSKY   77 (136)
T ss_dssp             GGGCCEEEBTTSCEEEGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHHHH
T ss_pred             CCCCeEeecCCCCeecHHHh-CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC----CcEEEEEEcCCCHHHHHHHHHHc
Confidence            46788888887766666665 78999999999999999999999999999986    38899999998899999999988


Q ss_pred             CCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceE
Q psy8729         103 PWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLD  141 (190)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~  141 (190)
                      ++ .++...|.+..+.+.|++.++|++++  +|++|++.
T Consensus        78 ~~-~~~~~~d~~~~~~~~~~i~~~P~~~l--id~~G~i~  113 (136)
T 1lu4_A           78 NL-NFTNLNDADGVIWARYNVPWQPAFVF--YRADGTST  113 (136)
T ss_dssp             TC-CSEEEECTTSHHHHHTTCCSSSEEEE--ECTTSCEE
T ss_pred             CC-CceEEECCchhHHHhcCCCCCCEEEE--ECCCCcEE
Confidence            86 56677777889999999999999999  99999553

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.83  E-value=6e-20  Score=136.72  Aligned_cols=115  Identities=21%  Similarity=0.371  Sum_probs=100.1

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCC-HHHHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRS-ESSYQSYL   99 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~-~~~~~~~~   99 (190)
                      +...|+|.+.+.+|....++.+ +|++++|+||++||++|+.++|.|+++++++++.  ++.+++|++|.+ .+.++.|.
T Consensus        37 g~~~p~f~l~~~~G~~~~l~~~-~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~~~~~  113 (186)
T 1jfu_A           37 PLKLPDLAFEDADGKPKKLSDF-RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP--NFEVVAINIDTRDPEKPKTFL  113 (186)
T ss_dssp             CCBCCCCEEECTTSCEEEGGGG-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT--TEEEEEEECCCSCTTHHHHHH
T ss_pred             CCcCCCcEeEcCCCCEeeHHHc-CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccC--CcEEEEEECCCCCHHHHHHHH
Confidence            5567889999888877777776 7999999999999999999999999999999754  599999999864 57889999


Q ss_pred             hCCCCCcccCCchhHHHHHHHcCCC----CCCeeeeeeecCCCce
Q psy8729         100 SGMPWPAIPYASETRQSLASLYNVH----GIPSLILLAVEAGGRL  140 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~v~----~~P~~~l~~id~~g~~  140 (190)
                      ++++...+++..|....+.+.|++.    ++|++++  ||++|++
T Consensus       114 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~l--id~~G~i  156 (186)
T 1jfu_A          114 KEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVL--VDPQGCE  156 (186)
T ss_dssp             HHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEE--ECTTSBE
T ss_pred             HHcCCCCCceEECCcchHHHHhccccccCCCCEEEE--ECCCCCE
Confidence            9998777888888888899999885    8999999  9999954

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.83  E-value=5.4e-20  Score=136.73  Aligned_cols=117  Identities=20%  Similarity=0.225  Sum_probs=97.9

Q ss_pred             CCcccceeccCC--CccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCC----cEEEEEeeCCC-CHH
Q psy8729          21 AKKTYNIGLAEG--TVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGY----QFEIIFVSSDR-SES   93 (190)
Q Consensus        21 ~~~~~~~~l~~~--~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~----~~~ii~i~~d~-~~~   93 (190)
                      +.+.|+|.+.+.  ++....++.+ +++++||+||++||++|+.++|.|++++++|+++|.    ++.+++|+.|. +.+
T Consensus        34 g~~~p~f~l~~~~~~g~~~~l~~~-~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~  112 (183)
T 3lwa_A           34 RQQLPDIGGDSLMEEGTQINLSDF-ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRD  112 (183)
T ss_dssp             CCCCCCCEEEBSSSTTCEEEGGGG-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHH
T ss_pred             CCCCCceeccccccCCcEecHHHh-CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHH
Confidence            456788988888  7777777776 789999999999999999999999999999988641    23999999998 789


Q ss_pred             HHHHHHhCCCCCcccCCchhHHHHHHHc---CCCCCCeeeeeeecCCCceE
Q psy8729          94 SYQSYLSGMPWPAIPYASETRQSLASLY---NVHGIPSLILLAVEAGGRLD  141 (190)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~P~~~l~~id~~g~~~  141 (190)
                      .+++|++++++ .+++..|....+.+.|   ++.++|++++  ||++|++.
T Consensus       113 ~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~l--id~~G~i~  160 (183)
T 3lwa_A          113 IAQDFVTDNGL-DYPSIYDPPFMTAASLGGVPASVIPTTIV--LDKQHRPA  160 (183)
T ss_dssp             HHHHHHHHTTC-CSCEEECTTCGGGGGTTTCCTTCCSEEEE--ECTTSCEE
T ss_pred             HHHHHHHHcCC-CccEEECCcchHHHHhccCCCCCCCeEEE--ECCCCcEE
Confidence            99999998885 3666667777777777   4889999999  99999553

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.82  E-value=4.4e-20  Score=137.80  Aligned_cols=120  Identities=13%  Similarity=0.183  Sum_probs=101.4

Q ss_pred             CCCCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------
Q psy8729          17 GSKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------   89 (190)
Q Consensus        17 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------   89 (190)
                      ....+...|+|++.+.++....++.+ .++++||+||++||++|+.++|.|++++++|.++   +.+++|+.|       
T Consensus         6 ~~~~g~~~p~f~l~~~~G~~~~l~~~-~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---~~~v~v~~d~~~~~~~   81 (188)
T 2cvb_A            6 ELPLESPLIDAELPDPRGGRYRLSQF-HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPE   81 (188)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGGGC-CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGG
T ss_pred             cCCCCCCCCCceeecCCCCEEeHHHh-CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC---eEEEEEEcCccccccc
Confidence            34455677889998888877777766 7899999999999999999999999999998753   999999986       


Q ss_pred             CCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEcc
Q psy8729          90 RSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITT  145 (190)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~  145 (190)
                      ++.+.++.|++++++ .+++..|.+..+.+.|++.++|++++  +|++|  +++..
T Consensus        82 d~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~G--~i~~~  132 (188)
T 2cvb_A           82 DAPEKMAAFAEEHGI-FFPYLLDETQEVAKAYRALRTPEVFL--FDERR--LLRYH  132 (188)
T ss_dssp             GSHHHHHHHHHHHTC-CSCEEECSSSHHHHHTTCCEESEEEE--ECTTC--BEEEE
T ss_pred             cCHHHHHHHHHHhCC-CceEEECCcchHHHHcCCCCCCeEEE--ECCCC--cEEEE
Confidence            467889999998875 46777777889999999999999999  99999  55544

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.82  E-value=1.1e-19  Score=130.92  Aligned_cols=114  Identities=16%  Similarity=0.290  Sum_probs=88.6

Q ss_pred             cccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC
Q psy8729          23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM  102 (190)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~  102 (190)
                      +.+.+.+. .+|....++.+ +|++++|+||++||++|+.++|.|+++++++.+.  ++.+++|++| +.+.++.|++++
T Consensus         4 pa~~~~~~-~~G~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~--~v~vv~v~~d-~~~~~~~~~~~~   78 (151)
T 3raz_A            4 SADELAGW-KDNTPQSLQSL-KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKG--SVDMVGIALD-TSDNIGNFLKQT   78 (151)
T ss_dssp             ---CEEET-TTCCEECGGGC-CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT--TEEEEEEESS-CHHHHHHHHHHS
T ss_pred             Ccchhhcc-cCCCEecHHHh-CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC--CeEEEEEECC-ChHHHHHHHHHc
Confidence            35566554 44555555655 7999999999999999999999999999998654  5999999997 577899999988


Q ss_pred             CCCcccCC---chhHHHHHHHcC--CCCCCeeeeeeecCCCceEEEc
Q psy8729         103 PWPAIPYA---SETRQSLASLYN--VHGIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus       103 ~~~~~~~~---~~~~~~~~~~~~--v~~~P~~~l~~id~~g~~~i~~  144 (190)
                      ++ .+|..   .+....+.+.|+  +.++|++++  +|++|++....
T Consensus        79 ~~-~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l--id~~G~i~~~~  122 (151)
T 3raz_A           79 PV-SYPIWRYTGANSRNFMKTYGNTVGVLPFTVV--EAPKCGYRQTI  122 (151)
T ss_dssp             CC-SSCEEEECCSCHHHHHHTTTCCSCCSSEEEE--EETTTTEEEEC
T ss_pred             CC-CCceEecCccchHHHHHHhCCccCCCCEEEE--ECCCCcEEEEE
Confidence            75 23333   334678999999  999999999  99999654333

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.82  E-value=6.1e-20  Score=133.37  Aligned_cols=118  Identities=15%  Similarity=0.334  Sum_probs=98.5

Q ss_pred             CCCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          18 SKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      ...+...|+|.+.+.++....++.+ ++++++|+||++||++|+.++|.|+++++++++.  ++.+++|+.|.   .++.
T Consensus        15 ~~~G~~~p~f~l~~~~g~~~~l~~~-~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~v~~d~---~~~~   88 (158)
T 3hdc_A           15 VRTGALAPNFKLPTLSGENKSLAQY-RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG--DLVVLAVNVEK---RFPE   88 (158)
T ss_dssp             CCTTSBCCCCEEECTTSCEEESGGG-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT--SEEEEEEECSS---SCCG
T ss_pred             cCCCCcCCCceeEcCCCCEEehHHh-CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccC--CeEEEEEeCCH---HHHH
Confidence            3446678899999888877777766 7899999999999999999999999999999865  59999999886   4667


Q ss_pred             HHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEc
Q psy8729          98 YLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~  144 (190)
                      |.+++++ .+++..|....+.+.|++.++|++++  +|++|++....
T Consensus        89 ~~~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~G~i~~~~  132 (158)
T 3hdc_A           89 KYRRAPV-SFNFLSDATGQVQQRYGANRLPDTFI--VDRKGIIRQRV  132 (158)
T ss_dssp             GGGGCCC-SCEEEECTTSHHHHHTTCCSSSEEEE--ECTTSBEEEEE
T ss_pred             HHHHcCC-CceEEECchHHHHHHhCCCCcceEEE--EcCCCCEEEEE
Confidence            7777765 46777777889999999999999999  99999554333

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.82  E-value=1e-19  Score=130.96  Aligned_cols=114  Identities=18%  Similarity=0.315  Sum_probs=97.0

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYL   99 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~   99 (190)
                      +...|+|.+.+.++....+..+ ++++++|+||++||++|+...|.|+++++++++.  ++.+++|+.+ ++.+.+++|+
T Consensus         5 G~~~p~~~l~~~~g~~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~   81 (153)
T 2l5o_A            5 SKTAPAFSLPDLHGKTVSNADL-QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK--NFQVLAVAQPIDPIESVRQYV   81 (153)
T ss_dssp             CTTCCSCEEECTTSCEEEHHHH-TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT--TEEEEEEECTTSCHHHHHHHH
T ss_pred             CCCCCCcEeecCCCCCccHHHh-CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC--CeEEEEEecCCCCHHHHHHHH
Confidence            4457888888888777666665 7899999999999999999999999999999875  4899999976 4678899999


Q ss_pred             hCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         100 SGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      +++++. ++...+....+.+.|++.++|++++  +|++|++
T Consensus        82 ~~~~~~-~~~~~d~~~~~~~~~~i~~~P~~~l--id~~G~i  119 (153)
T 2l5o_A           82 KDYGLP-FTVMYDADKAVGQAFGTQVYPTSVL--IGKKGEI  119 (153)
T ss_dssp             HHTTCC-SEEEECSSCHHHHHHTCCSSSEEEE--ECSSSCC
T ss_pred             HHcCCC-ceEEcCchHHHHHHcCCCccCeEEE--ECCCCcE
Confidence            988763 5666666788999999999999999  9999955

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.82  E-value=5.4e-20  Score=134.21  Aligned_cols=119  Identities=18%  Similarity=0.172  Sum_probs=101.5

Q ss_pred             CCCCccccee--ccCCCccceeeeeccCCcEEEEEEEc-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          19 KGAKKTYNIG--LAEGTVTTKVLSYIESCQVIGLYFSA-HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        19 ~~~~~~~~~~--l~~~~~~~~~~~~~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      ..+...|+|.  +.+.+|....++.+ .|++++|+||+ +||++|+..+|.|++++++|+++|  +++++|+.| +.+.+
T Consensus         8 ~~G~~~P~f~~~l~~~~G~~~~l~~~-~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d-~~~~~   83 (163)
T 3gkn_A            8 VLELPAATFDLPLSLSGGTQTTLRAH-AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAG--AKILGVSRD-SVKSH   83 (163)
T ss_dssp             CCCCCGGGGGCCEECSTTCEECSGGG-TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTT--CEEEEEESS-CHHHH
T ss_pred             ccCCcCCCccccccCCCCCEEEHHHh-CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHH
Confidence            3455778888  88888877777776 78899999997 999999999999999999999864  899999998 78889


Q ss_pred             HHHHhCCCCCcccCCchhHHHHHHHcCCCC------------CCeeeeeeecCCCceEEEc
Q psy8729          96 QSYLSGMPWPAIPYASETRQSLASLYNVHG------------IPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------~P~~~l~~id~~g~~~i~~  144 (190)
                      +.|.+++++ .+++..|.+..+.+.||+..            +|++++  ||++|+++...
T Consensus        84 ~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~l--id~~G~i~~~~  141 (163)
T 3gkn_A           84 DNFCAKQGF-AFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFL--LSPEGQVVQAW  141 (163)
T ss_dssp             HHHHHHHCC-SSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEE--ECTTSCEEEEE
T ss_pred             HHHHHHhCC-CceEEECCcHHHHHHhCCccccccccccccCcceEEEE--ECCCCeEEEEE
Confidence            999998875 57777888889999999987            999999  99999554333

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.81  E-value=8.4e-20  Score=130.23  Aligned_cols=112  Identities=15%  Similarity=0.183  Sum_probs=91.9

Q ss_pred             Ccccceec--cCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-----CHHH
Q psy8729          22 KKTYNIGL--AEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-----SESS   94 (190)
Q Consensus        22 ~~~~~~~l--~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-----~~~~   94 (190)
                      ...|+|.+  .+.++....++.+ ++++++|+||++||++|+...|.|++++++++++   +.++.|++|.     +.+.
T Consensus         5 ~~~P~f~~~~~~~~g~~~~~~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~~~~~~~~~~~~~   80 (148)
T 2b5x_A            5 QPMPELTGEKAWLNGEVTREQLI-GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPGK   80 (148)
T ss_dssp             CBCCCCCCCSEEESCCCCHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHHH
T ss_pred             CCCCCCccccccccCcccchhhc-CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEEcCCCccccCHHH
Confidence            34566665  4455555555554 7899999999999999999999999999998754   8899999875     6789


Q ss_pred             HHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          95 YQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      ++.|++++++ .+++..+....+.+.|++.++|++++  +|++|++
T Consensus        81 ~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~G~i  123 (148)
T 2b5x_A           81 IKETAAEHDI-TQPIFVDSDHALTDAFENEYVPAYYV--FDKTGQL  123 (148)
T ss_dssp             HHHHHHHTTC-CSCEEECSSCHHHHHTCCCCSSEEEE--ECTTCBE
T ss_pred             HHHHHHHcCC-CcceEECCchhHHHHhCCCCCCEEEE--ECCCCcE
Confidence            9999999885 56666777789999999999999999  9999944

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.81  E-value=8.7e-21  Score=138.35  Aligned_cols=116  Identities=15%  Similarity=0.204  Sum_probs=92.9

Q ss_pred             CCCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      .+..+|+|+|.+.+|....++++ +||+++|.|| ++||++|+.++|.|+++++++.+.  ++.+++|+.| +.+..++|
T Consensus         6 vG~~aPdF~l~~~~G~~~~l~d~-~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~--~~~~v~vs~d-~~~~~~~~   81 (157)
T 4g2e_A            6 IGELAPDFELPDTELKKVKLSAL-KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV--NAVVLGISVD-PPFSNKAF   81 (157)
T ss_dssp             TTSBCCCCEEEBTTSCEEEGGGG-TTSCEEEEECSCTTCCC------CCSCGGGGGGGC--SSEEEEEESS-CHHHHHHH
T ss_pred             CCCCCcCeEeECCCCCEEeHHHH-CCCeEEEEecCCCCCCccccchhhccccccccccc--CceEeeeccc-chhHHHHH
Confidence            35567889999988888888777 7899999999 999999999999999999999876  4889999987 67788999


Q ss_pred             HhCCCCCcccCCchhHHHHHHHcCCC-----------CCCeeeeeeecCCCceEE
Q psy8729          99 LSGMPWPAIPYASETRQSLASLYNVH-----------GIPSLILLAVEAGGRLDV  142 (190)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~v~-----------~~P~~~l~~id~~g~~~i  142 (190)
                      .+++++ .+|+..|.+..+.++||+.           ..|++|+  ||++|+++.
T Consensus        82 ~~~~~~-~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tfl--ID~~G~I~~  133 (157)
T 4g2e_A           82 KEHNKL-NFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFV--IDKEGKVRY  133 (157)
T ss_dssp             HHHTTC-CSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEE--ECTTSBEEE
T ss_pred             HHHcCC-cEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEE--ECCCCEEEE
Confidence            998886 5788888899999999974           4688999  999995543

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.81  E-value=1.1e-19  Score=133.17  Aligned_cols=113  Identities=17%  Similarity=0.189  Sum_probs=92.6

Q ss_pred             CCCcccceeccCC--CccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          20 GAKKTYNIGLAEG--TVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        20 ~~~~~~~~~l~~~--~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      .+...|+|++.+.  ++....++.+.++++++|+||++||++|+.+.|.|++++++      ++.+++|+++++.+.+++
T Consensus        24 ~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~------~v~vv~v~~~~~~~~~~~   97 (168)
T 2b1k_A           24 IGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAIS   97 (168)
T ss_dssp             TTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT------TCCEEEEEESCCHHHHHH
T ss_pred             cCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC------CCEEEEEECCCChHHHHH
Confidence            4556788888876  66665555545899999999999999999999999988765      378999999989999999


Q ss_pred             HHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          98 YLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      |++++++.......|....+.+.|++.++|++++  +|++|++
T Consensus        98 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~G~i  138 (168)
T 2b1k_A           98 WLKELGNPYALSLFDGDGMLGLDLGVYGAPETFL--IDGNGII  138 (168)
T ss_dssp             HHHHHCCCCSEEEEETTCHHHHHHTCCSSSEEEE--ECTTSBE
T ss_pred             HHHHcCCCCceeeECcchHHHHHcCccccCEEEE--ECCCCeE
Confidence            9998875432234566788999999999999999  9999954

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.81  E-value=1.6e-19  Score=130.13  Aligned_cols=112  Identities=21%  Similarity=0.325  Sum_probs=95.7

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC--CCCHHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS--DRSESSYQ   96 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~--d~~~~~~~   96 (190)
                      .++...|+|.+.+.++....++.+ + ++++|+||++||++|+...|.|+++++++  .   +.+++|++  +++.+.++
T Consensus         6 ~~g~~~p~f~l~~~~g~~~~l~~~-~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~---v~~v~v~~d~~~~~~~~~   78 (154)
T 3ia1_A            6 KPGEPLPDFLLLDPKGQPVTPATV-S-KPAVIVFWASWCTVCKAEFPGLHRVAEET--G---VPFYVISREPRDTREVVL   78 (154)
T ss_dssp             CSBEECCCCCEECTTSCEECTTTS-C-SSEEEEEECTTCHHHHHHHHHHHHHHHHH--C---CCEEEEECCTTCCHHHHH
T ss_pred             CCCCcCCceEEECCCCCEechHHc-C-CeEEEEEEcccChhHHHHHHHHHHHHHHc--C---CeEEEEeCCCcccHHHHH
Confidence            345567888888888777777766 4 89999999999999999999999999998  2   77888988  57889999


Q ss_pred             HHHhCCCCCcccCCch---hHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          97 SYLSGMPWPAIPYASE---TRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        97 ~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      .|++++++ .+++..+   ....+.+.|++.++|++++  +|++|++
T Consensus        79 ~~~~~~~~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~l--id~~G~i  122 (154)
T 3ia1_A           79 EYMKTYPR-FIPLLASDRDRPHEVAARFKVLGQPWTFV--VDREGKV  122 (154)
T ss_dssp             HHHTTCTT-EEECBCCSSCCHHHHHTTSSBCSSCEEEE--ECTTSEE
T ss_pred             HHHHHcCC-CcccccccccchHHHHHHhCCCcccEEEE--ECCCCCE
Confidence            99999986 5666655   6889999999999999999  9999944

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.80  E-value=9.7e-20  Score=132.54  Aligned_cols=108  Identities=19%  Similarity=0.350  Sum_probs=89.8

Q ss_pred             eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-----CCHHHHHHHHhCC
Q psy8729          28 GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-----RSESSYQSYLSGM  102 (190)
Q Consensus        28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-----~~~~~~~~~~~~~  102 (190)
                      .+.+.++....+... ++++++|+||++||++|+.+.|.|++++++|+..  ++.+++|++|     .+.+.+++|.+++
T Consensus        22 ~l~~~~g~~~~~~~~-~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~   98 (164)
T 2h30_A           22 TMKTADNRPASVYLK-KDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS--SANLITVASPGFLHEKKDGEFQKWYAGL   98 (164)
T ss_dssp             TCEETTSSBGGGGCC-TTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT--TSEEEEEECTTSTTCCCTTHHHHHHTTS
T ss_pred             ccCCCCCCEeeHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CcEEEEEEcCCCccccCHHHHHHHHHhC
Confidence            455555554444444 7899999999999999999999999999998776  4889999975     3467899999988


Q ss_pred             CCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         103 PWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      ++..+++..+....+++.|++.++|++++  +|++|++
T Consensus        99 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~G~i  134 (164)
T 2h30_A           99 NYPKLPVVTDNGGTIAQNLNISVYPSWAL--IGKDGDV  134 (164)
T ss_dssp             CCTTSCEEECTTCHHHHHTTCCSSSEEEE--ECTTSCE
T ss_pred             CCCcceEEEcCchHHHHHcCCCccceEEE--ECCCCcE
Confidence            87667777777889999999999999999  9999954

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.80  E-value=1.9e-19  Score=135.00  Aligned_cols=116  Identities=14%  Similarity=0.226  Sum_probs=98.5

Q ss_pred             CCCCcccceecc-CCCccceeeeeccCCc-EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------
Q psy8729          19 KGAKKTYNIGLA-EGTVTTKVLSYIESCQ-VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------   89 (190)
Q Consensus        19 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~k-~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------   89 (190)
                      ..+...|+|.+. +.++....++.+ .++ ++||+||++||++|+.++|.|++++++|.++  ++.+++|++|       
T Consensus        19 ~~g~~~p~f~l~~~~~G~~~~l~~~-~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~v~~d~~~~~~~   95 (196)
T 2ywi_A           19 PLGKQAPPFALTNVIDGNVVRLEDV-KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPK--GVSFVAINSNDAEQYPE   95 (196)
T ss_dssp             CTTCBCCCCEEEETTTCCEEEHHHH-CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG--TCEEEEEECSCTTTCGG
T ss_pred             CcCCcCCceeeeecCCCCEEeHHHh-CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC--CcEEEEEECCccccccc
Confidence            345567889998 888877777776 566 6999999999999999999999999999876  4899999986       


Q ss_pred             CCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          90 RSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      ++.+.++.|++++++ .+++..|.+..+.+.|++.++|++++  +|++|++
T Consensus        96 d~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~l--id~~G~i  143 (196)
T 2ywi_A           96 DSPENMKKVAEELGY-PFPYLYDETQEVAKAYDAACTPDFYI--FDRDLKC  143 (196)
T ss_dssp             GSHHHHHHHHHHHTC-CSCEEECSSCHHHHHHTCCEESEEEE--EETTCBE
T ss_pred             cCHHHHHHHHHHcCC-CceEEECCchHHHHHhCCCCCCeEEE--EcCCCeE
Confidence            467889999998875 56666777788999999999999999  9999944

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.80  E-value=3.6e-19  Score=130.84  Aligned_cols=118  Identities=18%  Similarity=0.192  Sum_probs=94.6

Q ss_pred             CCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCCh-hhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC---CCHHHH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCP-PCKAFTPQLIETYRKLKEDGYQFEIIFVSSD---RSESSY   95 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d---~~~~~~   95 (190)
                      .+...|+|++.+.+|....++.+ +|+++||+||++||+ +|+..++.|.++++++.+.+.++.+++|++|   ++.+.+
T Consensus         9 ~g~~~p~f~l~~~~G~~~~l~~~-~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~   87 (174)
T 1xzo_A            9 LNYEVEPFTFQNQDGKNVSLESL-KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQL   87 (174)
T ss_dssp             CCEECCCCEEECTTSCEEETGGG-TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHH
T ss_pred             cccccCCcEEEcCCCCEEehhhc-CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHH
Confidence            35567889999888877777776 789999999999999 9999999999999999987556999999998   467889


Q ss_pred             HHHHhCCCCCc--ccCCchhHHHHHHH----------------cCCCCCCeeeeeeecCCCce
Q psy8729          96 QSYLSGMPWPA--IPYASETRQSLASL----------------YNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        96 ~~~~~~~~~~~--~~~~~~~~~~~~~~----------------~~v~~~P~~~l~~id~~g~~  140 (190)
                      ++|+++++...  +++..+.+..+.+.                |++..+|++++  ||++|++
T Consensus        88 ~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l--id~~G~i  148 (174)
T 1xzo_A           88 KKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYL--VGPDGKV  148 (174)
T ss_dssp             HHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEE--ECTTSEE
T ss_pred             HHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEE--ECCCCeE
Confidence            99999887532  25555544444433                34678999999  9999944

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.80  E-value=1.3e-18  Score=127.52  Aligned_cols=114  Identities=15%  Similarity=0.235  Sum_probs=92.2

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChh-hhhhhHHHHHHHHHHhhc--CCcEEEEEeeCCC---CHHHHHHH
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPP-CKAFTPQLIETYRKLKED--GYQFEIIFVSSDR---SESSYQSY   98 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~--g~~~~ii~i~~d~---~~~~~~~~   98 (190)
                      |+|++.+.+|....++.+ .|+++||+||++||++ |+.++|.|+++++++.+.  +.++++++|++|.   +.+.++.|
T Consensus         7 p~f~l~~~~G~~~~l~~~-~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~   85 (171)
T 2rli_A            7 GDFHLLDHRGRARCKADF-RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARY   85 (171)
T ss_dssp             SCCEEEETTSCEEETTTT-TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHH
T ss_pred             CCeEEEeCCCCEEeHHHh-CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHH
Confidence            678888877777777766 7899999999999998 999999999999999752  1369999999983   57889999


Q ss_pred             HhCCCCCcccCC---chhHHHHHHHcCCCCCC---------------eeeeeeecCCCceEE
Q psy8729          99 LSGMPWPAIPYA---SETRQSLASLYNVHGIP---------------SLILLAVEAGGRLDV  142 (190)
Q Consensus        99 ~~~~~~~~~~~~---~~~~~~~~~~~~v~~~P---------------~~~l~~id~~g~~~i  142 (190)
                      +++++. .++..   .+....+.+.|++..+|               ++++  ||++|++..
T Consensus        86 ~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~l--id~~G~i~~  144 (171)
T 2rli_A           86 VQDFHP-RLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYL--LNPDGLFTD  144 (171)
T ss_dssp             HHTTCT-TCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEE--ECTTSCEEE
T ss_pred             HHHcCC-CeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEE--ECCCCeEEE
Confidence            998874 23333   23456889999999888               8999  999995533

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.79  E-value=2.4e-19  Score=130.25  Aligned_cols=117  Identities=15%  Similarity=0.209  Sum_probs=98.6

Q ss_pred             CCCCCcccceeccCCCccceeeeeccCCc-EEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          18 SKGAKKTYNIGLAEGTVTTKVLSYIESCQ-VIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~k-~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      ...+...|+|.+.+.+|....++.+ .|+ +++|+|| ++||++|+.++|.|+++++++.+.  ++.+++|+.| +.+.+
T Consensus         9 ~~~G~~~p~f~l~~~~G~~~~l~~~-~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~is~d-~~~~~   84 (160)
T 1xvw_A            9 LNVGATAPDFTLRDQNQQLVTLRGY-RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND--DSAALAISVG-PPPTH   84 (160)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGG-TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS--SEEEEEEESC-CHHHH
T ss_pred             CCCCCCCCCeEeEcCCCCEEeHHHh-cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CcEEEEEeCC-CHHHH
Confidence            3445677889998888877777776 666 9999998 999999999999999999998764  5999999997 57789


Q ss_pred             HHHHhCCCCCcccCCchh--HHHHHHHcCCC----CCC--eeeeeeecCCCceE
Q psy8729          96 QSYLSGMPWPAIPYASET--RQSLASLYNVH----GIP--SLILLAVEAGGRLD  141 (190)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~----~~P--~~~l~~id~~g~~~  141 (190)
                      +.|.+++++ .+++..|.  +..+.+.|++.    ++|  ++++  +|++|++.
T Consensus        85 ~~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~l--id~~G~i~  135 (160)
T 1xvw_A           85 KIWATQSGF-TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFV--VDRSGIIR  135 (160)
T ss_dssp             HHHHHHHTC-CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEE--ECTTSBEE
T ss_pred             HHHHHhcCC-CceEEecCCcChHHHHHcCCccccCCCeeeeEEE--ECCCCeEE
Confidence            999998886 56777774  78899999998    999  9999  99999553

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.79  E-value=9.5e-19  Score=127.25  Aligned_cols=114  Identities=18%  Similarity=0.241  Sum_probs=93.7

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEEcCCChh-hhhhhHHHHHHHHHHhhc-C-CcEEEEEeeCCC---CHHHHHH
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPP-CKAFTPQLIETYRKLKED-G-YQFEIIFVSSDR---SESSYQS   97 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~-g-~~~~ii~i~~d~---~~~~~~~   97 (190)
                      .|+|++.+.+|+...++.+ .|++++|+||++||++ |+..+|.|+++++++++. + .++++++|++|.   +.+.+++
T Consensus         3 ap~f~l~~~~G~~~~l~~~-~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~   81 (164)
T 2ggt_A            3 GGPFSLTTHTGERKTDKDY-LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIAN   81 (164)
T ss_dssp             CCCCEEEETTSCEEEGGGG-TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHH
T ss_pred             CCCeEEEeCCCCEEeHHHc-CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHH
Confidence            5678888888777777776 7899999999999998 999999999999999862 1 269999999985   4788999


Q ss_pred             HHhCCCCCcccCC---chhHHHHHHHcCCCCCC---------------eeeeeeecCCCceE
Q psy8729          98 YLSGMPWPAIPYA---SETRQSLASLYNVHGIP---------------SLILLAVEAGGRLD  141 (190)
Q Consensus        98 ~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~P---------------~~~l~~id~~g~~~  141 (190)
                      |+++++. .+++.   .+....+.+.||+..+|               ++++  ||++|++.
T Consensus        82 ~~~~~~~-~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~l--id~~G~i~  140 (164)
T 2ggt_A           82 YVKEFSP-KLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYL--IGPDGEFL  140 (164)
T ss_dssp             HHHTTCS-SCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEE--ECTTSCEE
T ss_pred             HHHHcCC-CeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEE--ECCCCeEE
Confidence            9998874 23333   45567899999999999               8999  99999553

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=6.6e-21  Score=138.43  Aligned_cols=115  Identities=18%  Similarity=0.348  Sum_probs=96.6

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHH-HHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIE-TYRKLKEDGYQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~-l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      +...|+|.+.+.++....++.+ ++++++|+||++||++|+.++|.|++ +++++... .++.++.|++|.+.+.+++|.
T Consensus        10 g~~~p~f~l~~~~g~~~~l~~~-~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~-~~~~vv~v~~d~~~~~~~~~~   87 (159)
T 2ls5_A           10 GEMAPDFTITLTDGKQVTLSSL-RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDN-ADFALIGIDRDEPLEKVLAFA   87 (159)
Confidence            4456788888887776666665 78999999999999999999999998 88888722 359999999998778899999


Q ss_pred             hCCCCCcccCCchhHHHHHHHcC--CCCCCeeeeeeecCCCce
Q psy8729         100 SGMPWPAIPYASETRQSLASLYN--VHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~--v~~~P~~~l~~id~~g~~  140 (190)
                      +++++ .+|+..|....+.+.|+  +.++|++++  +|++|++
T Consensus        88 ~~~~~-~~~~~~d~~~~~~~~~~~~~~~~P~~~l--id~~G~i  127 (159)
T 2ls5_A           88 KSTGV-TYPLGLDPGADIFAKYALRDAGITRNVL--IDREGKI  127 (159)
Confidence            98886 67888888889999999  566999999  9999943

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.78  E-value=2.2e-19  Score=134.27  Aligned_cols=115  Identities=15%  Similarity=0.203  Sum_probs=89.1

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSES   93 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~   93 (190)
                      +...|+|++.+.+|+...++.+ +||++||+||++||++|+.++|.|++++++|+++  ++++++|++|       ++.+
T Consensus        23 ~~~~p~f~l~d~~G~~~~l~~~-~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~~~vi~is~d~~~~~e~~~~~   99 (187)
T 3dwv_A           23 ASSIFDFEVLDADHKPYNLVQH-KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ--GFTVLAFPSNQFGGQEPGNEE   99 (187)
T ss_dssp             CCSGGGSCCBBTTSCBCCGGGG-TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG--TCEEEEEEBCCCSSCSSSBTT
T ss_pred             CCccCCeEEEcCCCCEeeHHHh-CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC--CeEEEEEECcccCCCCCCCHH
Confidence            4567899999988887777776 7899999999999999999999999999999886  4999999987       3578


Q ss_pred             HHHHHHhCC-CCCcccCCc--hh----HHHHH--------HHcCCCCCC---eeeeeeecCCCceE
Q psy8729          94 SYQSYLSGM-PWPAIPYAS--ET----RQSLA--------SLYNVHGIP---SLILLAVEAGGRLD  141 (190)
Q Consensus        94 ~~~~~~~~~-~~~~~~~~~--~~----~~~~~--------~~~~v~~~P---~~~l~~id~~g~~~  141 (190)
                      ++++|+++. +. .+|+..  |.    ...+.        ..+++..+|   ++++  ||++|++.
T Consensus       100 ~~~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~l--iD~~G~i~  162 (187)
T 3dwv_A          100 EIKEFVCTKFKA-EFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFL--IDRDGVPV  162 (187)
T ss_dssp             HHHHSCCBCCCC-SSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEE--ECTTSCEE
T ss_pred             HHHHHHHhccCC-CCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEE--ECCCCCEE
Confidence            899999843 53 334332  11    11121        345677788   9999  99999553

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.78  E-value=7.8e-19  Score=128.43  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=97.3

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEEc-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSA-HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      ..+...|+|++.+.+|....++.+ +||+++|+||+ +||++|+.++|.|+++++++  .  ++++++|+.| +.+.+++
T Consensus        17 ~~G~~~P~f~l~~~~G~~v~l~~~-~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~--~v~vv~is~d-~~~~~~~   90 (163)
T 1psq_A           17 QVGDKALDFSLTTTDLSKKSLADF-DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--D--NTVVLTVSMD-LPFAQKR   90 (163)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGG-TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T--TEEEEEEESS-CHHHHHH
T ss_pred             CCCCCCCCEEEEcCCCcEeeHHHh-CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--C--CcEEEEEECC-CHHHHHH
Confidence            345677889999888877777776 78999999995 99999999999999999888  3  4999999998 5677889


Q ss_pred             HHhCCCCCcccCCch-hHHHHHHHcCCC----C--CCeeeeeeecCCCceEEEc
Q psy8729          98 YLSGMPWPAIPYASE-TRQSLASLYNVH----G--IPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        98 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~----~--~P~~~l~~id~~g~~~i~~  144 (190)
                      |.+++++..+|+..| .+..+.+.||+.    +  .|++++  ||++|+++...
T Consensus        91 ~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~l--iD~~G~i~~~~  142 (163)
T 1psq_A           91 WCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFV--LDTDNTIRYVE  142 (163)
T ss_dssp             HHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEE--ECTTCBEEEEE
T ss_pred             HHHhcCCCCcEEecCCchhHHHHHhCCccccCCceEEEEEE--EcCCCeEEEEE
Confidence            999887535677777 678999999987    3  499999  99999554333

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.78  E-value=2.6e-20  Score=136.91  Aligned_cols=120  Identities=18%  Similarity=0.224  Sum_probs=100.2

Q ss_pred             CCCCCcccceeccCCCccceeeeec-cCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          18 SKGAKKTYNIGLAEGTVTTKVLSYI-ESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~~~-~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      ...+.++|+|+|.+.+|....++++ .+||+++|.|| ++|||+|+.++|.|++++++|.+.|  +.+++|+.| +.+.+
T Consensus         5 l~vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~--v~vv~is~d-~~~~~   81 (164)
T 4gqc_A            5 VELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVD-SPWCL   81 (164)
T ss_dssp             CCTTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSS--SEEEEEESS-CHHHH
T ss_pred             ccCCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccC--ceEEEecCC-CHHHH
Confidence            3446678899999988877776654 47888888888 9999999999999999999998764  899999987 67889


Q ss_pred             HHHHhCCCCCcccCCchhHHHHHHHcCCC----------CCCeeeeeeecCCCceEEE
Q psy8729          96 QSYLSGMPWPAIPYASETRQSLASLYNVH----------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----------~~P~~~l~~id~~g~~~i~  143 (190)
                      ++|.+++++ .+|+..|.+..+.+.||+.          ..|++|+  ||++|+++..
T Consensus        82 ~~~~~~~~~-~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tfl--ID~~G~I~~~  136 (164)
T 4gqc_A           82 KKFKDENRL-AFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFI--VKPDGTVAYK  136 (164)
T ss_dssp             HHHHHHTTC-CSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEE--ECTTSBEEEE
T ss_pred             HHHHHhcCc-ccceeecCchHHHHHcCCcccccccCcCCeeeEEEE--ECCCCEEEEE
Confidence            999998886 6888889999999999983          4789999  9999955433

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.78  E-value=1e-18  Score=127.83  Aligned_cols=114  Identities=14%  Similarity=0.238  Sum_probs=94.1

Q ss_pred             CCcccceecc--CCCc--cceeeee-ccCCcEEEEEEE-cCCChhhh-hhhHHHHHHHHHHhhcCCcEE-EEEeeCCCCH
Q psy8729          21 AKKTYNIGLA--EGTV--TTKVLSY-IESCQVIGLYFS-AHWCPPCK-AFTPQLIETYRKLKEDGYQFE-IIFVSSDRSE   92 (190)
Q Consensus        21 ~~~~~~~~l~--~~~~--~~~~~~~-~~~~k~vlv~F~-a~wC~~C~-~~~~~l~~l~~~~~~~g~~~~-ii~i~~d~~~   92 (190)
                      +...|+|++.  +.+|  ....++. + +|++++|.|| ++||++|+ .++|.|+++++++.++  +++ +++|+.| +.
T Consensus         7 G~~aP~f~l~~~~~~G~~~~~~l~~~~-~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~--~v~~vv~Is~d-~~   82 (162)
T 1tp9_A            7 GDVLPDGKLAYFDEQDQLQEVSVHSLV-AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK--GVTEILCISVN-DP   82 (162)
T ss_dssp             TCBCCCCEEEEECTTSCEEEEESHHHH-TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT--TCCCEEEEESS-CH
T ss_pred             CCCCCCeEEEeecCCCCceeEeHHHHh-CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEECC-CH
Confidence            4456677664  6666  5555655 4 7899999999 89999999 9999999999999876  488 9999987 57


Q ss_pred             HHHHHHHhCCCCC-cccCCchhHHHHHHHcCCC------C-----CCeeeeeeecCCCceE
Q psy8729          93 SSYQSYLSGMPWP-AIPYASETRQSLASLYNVH------G-----IPSLILLAVEAGGRLD  141 (190)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~------~-----~P~~~l~~id~~g~~~  141 (190)
                      +.+++|.++++.. .+|+..|.+..+.++||+.      +     +|++++  || +|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~v--id-~G~i~  140 (162)
T 1tp9_A           83 FVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALL--VD-DLKVK  140 (162)
T ss_dssp             HHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEE--EE-TTEEE
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEE--EE-CCEEE
Confidence            7899999999864 4888888889999999986      2     899999  99 99443

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.78  E-value=7.7e-19  Score=135.02  Aligned_cols=119  Identities=17%  Similarity=0.184  Sum_probs=96.7

Q ss_pred             CCCcccceeccCC--Cc--cceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHH
Q psy8729          20 GAKKTYNIGLAEG--TV--TTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESS   94 (190)
Q Consensus        20 ~~~~~~~~~l~~~--~~--~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~   94 (190)
                      .+...|+|++.+.  +|  ....++.+.+|+++||+|| ++||++|+.++|.|++++++|.++  ++++++|+.| +.+.
T Consensus        27 ~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~--~v~vv~Is~D-~~~~  103 (221)
T 2c0d_A           27 VTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENK--NVELLGISVD-SVYS  103 (221)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHT--TEEEEEEESS-CHHH
T ss_pred             CCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHH
Confidence            3456778888776  66  5566666536889999999 999999999999999999999876  4999999997 5667


Q ss_pred             HHHHHhCC----C--CCcccCCchhHHHHHHHcCC-----CCCCeeeeeeecCCCceEEE
Q psy8729          95 YQSYLSGM----P--WPAIPYASETRQSLASLYNV-----HGIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        95 ~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~v-----~~~P~~~l~~id~~g~~~i~  143 (190)
                      .+.|.+++    +  -..+|+..|.+..+.+.||+     ..+|++++  ||++|+++..
T Consensus       104 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~l--ID~~G~I~~~  161 (221)
T 2c0d_A          104 HLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFI--IDKNGCVRHQ  161 (221)
T ss_dssp             HHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEE--ECTTSBEEEE
T ss_pred             HHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEE--ECCCCeEEEE
Confidence            88999877    2  23677778888899999999     37999999  9999955443

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.78  E-value=5.6e-19  Score=131.90  Aligned_cols=115  Identities=11%  Similarity=0.126  Sum_probs=95.8

Q ss_pred             CCcccceeccCCCcc----ceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          21 AKKTYNIGLAEGTVT----TKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~----~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      +...|+|++.+.++.    ...++.+ .|+++||+|| ++||++|+.++|.|++++++|.++  ++.+++|+.|. .+..
T Consensus         4 G~~~P~f~l~~~~g~~~~~~~~l~~~-~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~vs~d~-~~~~   79 (187)
T 1we0_A            4 GTEVQPFRAQAFQSGKDFFEVTEADL-KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL--GVEVYSVSTDT-HFVH   79 (187)
T ss_dssp             TCBCCCCEEEEECSSSCCEEEETTTT-SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT--TEEEEEEESSC-HHHH
T ss_pred             CCcCCCeEEeccCCCccceEecHHHH-CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc--CCEEEEEECCC-HHHH
Confidence            345678888776655    5556665 7899999999 999999999999999999999876  49999999985 6778


Q ss_pred             HHHHhCC----CCCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEE
Q psy8729          96 QSYLSGM----PWPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDV  142 (190)
Q Consensus        96 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i  142 (190)
                      +.|.+++    ++ .+++..|.+..+.+.|++.      ++|++++  ||++|++..
T Consensus        80 ~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~l--id~~G~i~~  133 (187)
T 1we0_A           80 KAWHENSPAVGSI-EYIMIGDPSQTISRQFDVLNEETGLADRGTFI--IDPDGVIQA  133 (187)
T ss_dssp             HHHHHSCHHHHTC-CSEEEECTTCHHHHHTTCEETTTTEECEEEEE--ECTTSBEEE
T ss_pred             HHHHHHhccccCC-CceEEECCchHHHHHhCCCcCCCCceeeEEEE--ECCCCeEEE
Confidence            9999988    43 5677777778999999998      8999999  999995533

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.78  E-value=3.2e-19  Score=132.72  Aligned_cols=117  Identities=15%  Similarity=0.113  Sum_probs=88.2

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-------C
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-------S   91 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-------~   91 (190)
                      ..+...|+|++.+.+|....++.+ +|+++||+||++||++|+.++|.|++++++|+++  ++.+++|++|.       +
T Consensus        24 ~~g~~~p~f~l~~~~G~~~~l~~~-~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~v~vv~vs~d~~~~~e~~~  100 (181)
T 2p31_A           24 QQEQDFYDFKAVNIRGKLVSLEKY-RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPH--HFNVLAFPCNQFGQQEPDS  100 (181)
T ss_dssp             ---CCGGGCEEEBTTSCEEEGGGG-TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSC
T ss_pred             CcCCccCceEeecCCCCEecHHHc-CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC--CEEEEEEECcCCCCCCCCC
Confidence            345567889998888877777776 7899999999999999999999999999999876  49999999874       6


Q ss_pred             HHHHHHHHhC-CCCCcccCCc--hhHHHH---HHHcCCCCCC-------eeeeeeecCCCceE
Q psy8729          92 ESSYQSYLSG-MPWPAIPYAS--ETRQSL---ASLYNVHGIP-------SLILLAVEAGGRLD  141 (190)
Q Consensus        92 ~~~~~~~~~~-~~~~~~~~~~--~~~~~~---~~~~~v~~~P-------~~~l~~id~~g~~~  141 (190)
                      .+.+++|+++ ++. .+|+..  |.+...   .-.|++.++|       ++++  ||++|++.
T Consensus       101 ~~~~~~~~~~~~~~-~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~l--id~~G~i~  160 (181)
T 2p31_A          101 NKEIESFARRTYSV-SFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYL--VAPDGKVV  160 (181)
T ss_dssp             HHHHHHHHHHHHCC-CSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEE--ECTTSCEE
T ss_pred             HHHHHHHHHhhcCC-CceeEeecccCCccchhhhhhhhhcCCCccccceeEEE--EcCCCCEE
Confidence            7889999987 664 344442  111111   1134566788       9999  99999543

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.78  E-value=5e-19  Score=129.78  Aligned_cols=118  Identities=12%  Similarity=0.046  Sum_probs=97.7

Q ss_pred             CCCCCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          18 SKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      ...+...|+|++.+.+|....++.+ +|+++||+|| ++||++|+.++|.|+++++++  .  ++++++|+.| +.+.++
T Consensus        17 ~~~G~~~P~f~l~~~~G~~v~l~~~-~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~--~v~vv~Is~d-~~~~~~   90 (165)
T 1q98_A           17 PQVGEIVENFILVGNDLADVALNDF-ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--S--NTIVLCISAD-LPFAQA   90 (165)
T ss_dssp             CCTTCBCCCCEEECTTSCEEEGGGG-TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--T--TEEEEEEESS-CHHHHT
T ss_pred             CCCCCCCCCeEEECCCCCEEehHHh-CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--C--CCEEEEEeCC-CHHHHH
Confidence            3445567889999888877777776 7899999999 899999999999999999998  3  4999999997 567788


Q ss_pred             HHHhCCCCCcccCCchh-HHHHHHHcCCCC---------CCeeeeeeecCCCceEEE
Q psy8729          97 SYLSGMPWPAIPYASET-RQSLASLYNVHG---------IPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        97 ~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~---------~P~~~l~~id~~g~~~i~  143 (190)
                      +|.+++++..+++..|. +..+.+.||+..         .|++++  ||++|+++..
T Consensus        91 ~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~l--iD~~G~i~~~  145 (165)
T 1q98_A           91 RFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIV--LDEQNNVLHS  145 (165)
T ss_dssp             TCTTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEE--ECTTSBEEEE
T ss_pred             HHHHHcCCCceEEeeccccchHHHHhCceecccccCCccceeEEE--EcCCCEEEEE
Confidence            99998886457877776 688999999853         599999  9999955433

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.78  E-value=9.6e-19  Score=128.88  Aligned_cols=116  Identities=7%  Similarity=0.067  Sum_probs=96.3

Q ss_pred             CCCcccceecc-CCCccceeeeeccCCcEEEEEEE-cCCChhhhh-hhHHHHHHHHHHhhcCCcE-EEEEeeCCCCHHHH
Q psy8729          20 GAKKTYNIGLA-EGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKA-FTPQLIETYRKLKEDGYQF-EIIFVSSDRSESSY   95 (190)
Q Consensus        20 ~~~~~~~~~l~-~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~-~~~~l~~l~~~~~~~g~~~-~ii~i~~d~~~~~~   95 (190)
                      .+...|+|++. +.++....++.+.+++++||.|| ++|||+|+. ++|.|+++++++.++|  + ++++|+.| +.+.+
T Consensus         5 ~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d-~~~~~   81 (167)
T 2wfc_A            5 EGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKG--VDIIACMAVN-DSFVM   81 (167)
T ss_dssp             TTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTT--CCEEEEEESS-CHHHH
T ss_pred             CCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCC-CHHHH
Confidence            34567888888 87777776666536778888876 999999999 9999999999998764  8 99999987 57789


Q ss_pred             HHHHhCCCCC-cccCCchhHHHHHHHcCCCCC-----------CeeeeeeecCCCceE
Q psy8729          96 QSYLSGMPWP-AIPYASETRQSLASLYNVHGI-----------PSLILLAVEAGGRLD  141 (190)
Q Consensus        96 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~-----------P~~~l~~id~~g~~~  141 (190)
                      ++|.+++++. .+|+..|.+..+.+.||+...           |++++  | ++|+++
T Consensus        82 ~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~l--I-~~G~I~  136 (167)
T 2wfc_A           82 DAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLV--I-EDGVVT  136 (167)
T ss_dssp             HHHHHHTTCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEE--E-ETTEEE
T ss_pred             HHHHHhcCCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEE--E-eCCEEE
Confidence            9999998864 488889989999999998754           99999  9 999443

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.78  E-value=1.2e-18  Score=142.31  Aligned_cols=117  Identities=16%  Similarity=0.216  Sum_probs=99.2

Q ss_pred             CCCccccee-----ccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-----
Q psy8729          20 GAKKTYNIG-----LAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-----   89 (190)
Q Consensus        20 ~~~~~~~~~-----l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-----   89 (190)
                      .+...|+|.     +.+.++....++.+ +++++||+||++||++|+.++|.|++++++|+++  ++.+++|++|     
T Consensus        53 vG~~aPdF~~~~~wL~d~dG~~vsLsdl-~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~--~v~vi~Vs~d~~~~~  129 (352)
T 2hyx_A           53 SCGTAPDLKGITGWLNTPGNKPIDLKSL-RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS--GLAVIGVHTPEYAFE  129 (352)
T ss_dssp             CCCBCCCCCSCCEEESSGGGCCCCGGGG-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEECCSSGGG
T ss_pred             CCCcCCCccccccccCCCCCCEEcHHHh-CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcC--CeEEEEEECCccccc
Confidence            355678888     77777766666665 7999999999999999999999999999999875  4999999976     


Q ss_pred             CCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEE
Q psy8729          90 RSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDV  142 (190)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i  142 (190)
                      ++.+.+++|++++++ .+|+..|.+..+.+.|++.++|++++  ||++|++..
T Consensus       130 d~~~~~~~~~~~~~l-~fpv~~D~~~~l~~~ygV~~~Pt~~l--ID~~G~Iv~  179 (352)
T 2hyx_A          130 KVPGNVAKGAANLGI-SYPIALDNNYATWTNYRNRYWPAEYL--IDATGTVRH  179 (352)
T ss_dssp             GCHHHHHHHHHHHTC-CSCEEECTTSHHHHHTTCCEESEEEE--ECTTSBEEE
T ss_pred             CCHHHHHHHHHHcCC-CccEEeCCcHHHHHHcCCCccCEEEE--EeCCCeEEE
Confidence            467899999998875 46777777889999999999999999  999996533

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.78  E-value=4.5e-19  Score=127.84  Aligned_cols=113  Identities=16%  Similarity=0.231  Sum_probs=91.5

Q ss_pred             CCCcccceeccCCCc--------cceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCC
Q psy8729          20 GAKKTYNIGLAEGTV--------TTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRS   91 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~--------~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~   91 (190)
                      .+...|+|.+.+.++        ....+..+ .+++++|+||++||++|+.+.|.|++++++     .++.++.|+.+.+
T Consensus        10 ~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~-~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-----~~v~~v~v~~~~~   83 (156)
T 1kng_A           10 IGRPAPQTALPPLEGLQADNVQVPGLDPAAF-KGKVSLVNVWASWCVPCHDEAPLLTELGKD-----KRFQLVGINYKDA   83 (156)
T ss_dssp             --CBCCCCCBCCCTTCEETTEECCCBCGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHTTC-----TTSEEEEEEESCC
T ss_pred             hCCCCCCceeeeccCcccccccCceechHHh-CCCEEEEEEEcccCHhHHHHHHHHHHHHhc-----CCeEEEEEECCCC
Confidence            345677888887776        55555555 689999999999999999999999888765     2588999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          92 ESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      .+.+++|++++++....+..+....+.+.|++.++|++++  +|++|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~~--id~~G~i  130 (156)
T 1kng_A           84 ADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFV--VGREGTI  130 (156)
T ss_dssp             HHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEEEE--ECTTSBE
T ss_pred             HHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccCeEEE--EcCCCCE
Confidence            9999999998875322255666788999999999999999  9999954

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.78  E-value=5.4e-19  Score=130.09  Aligned_cols=115  Identities=14%  Similarity=0.189  Sum_probs=79.7

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSES   93 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~   93 (190)
                      +...|+|++.+.+|....++.+ +|+++||+||++||++|+ ++|.|+++++++.++  ++.+++|++|       ++.+
T Consensus         9 ~~~~~~f~l~d~~G~~~~l~~~-~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~d~~~   84 (171)
T 3cmi_A            9 MSEFYKLAPVDKKGQPFPFDQL-KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDE--GFTIIGFPCNQFGHQEPGSDE   84 (171)
T ss_dssp             -CGGGGCCCBBTTSCBCCGGGG-TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG--TEEEEEEEECSCC--------
T ss_pred             hhheeeeEEEcCCCCEecHHHc-CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccC--CeEEEEEECcccCCCCCCCHH
Confidence            3467889999888887777776 789999999999999999 999999999999876  4999999986       4567


Q ss_pred             HHHHHH-hCCCCCcccCCchhH--H----H-----HHHHcCCCCCC------eeeeeeecCCCceEE
Q psy8729          94 SYQSYL-SGMPWPAIPYASETR--Q----S-----LASLYNVHGIP------SLILLAVEAGGRLDV  142 (190)
Q Consensus        94 ~~~~~~-~~~~~~~~~~~~~~~--~----~-----~~~~~~v~~~P------~~~l~~id~~g~~~i  142 (190)
                      .++.|+ ++++. .+|+..|.+  .    .     ..+.|++.++|      ++++  ||++|++..
T Consensus        85 ~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~l--id~~G~i~~  148 (171)
T 3cmi_A           85 EIAQFCQLNYGV-TFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFL--VDKKGKVYE  148 (171)
T ss_dssp             ----------CC-CSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEE--ECSSSCEEE
T ss_pred             HHHHHHHhccCC-CceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEE--ECCCCCEEE
Confidence            888999 77764 344443211  0    1     12458999999      9999  999995533

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.78  E-value=1.1e-18  Score=134.13  Aligned_cols=117  Identities=15%  Similarity=0.219  Sum_probs=96.1

Q ss_pred             CCCCCcccceecc---CCCccceeeeeccCCcEEEEEEEc-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHH
Q psy8729          18 SKGAKKTYNIGLA---EGTVTTKVLSYIESCQVIGLYFSA-HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSES   93 (190)
Q Consensus        18 ~~~~~~~~~~~l~---~~~~~~~~~~~~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~   93 (190)
                      ...+...|+|++.   ++++....++.+ +||++||+||+ +||++|+.++|.|++++++|.++  ++++++|++|. .+
T Consensus        40 l~~G~~aP~f~l~~~~d~~G~~v~l~~~-~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~--~v~vv~Is~D~-~~  115 (222)
T 3ztl_A           40 LLPNRPAPEFKGQAVINGEFKEICLKDY-RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR--NCQVIACSTDS-QY  115 (222)
T ss_dssp             CCSSEECCCCEEEEEETTEEEEEEGGGG-TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTT--TEEEEEEESSC-HH
T ss_pred             ccCCCCCCCeEEecccCCCCcEEeHHHh-CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEECCC-HH
Confidence            3445567888887   555566777776 78999999996 99999999999999999999876  49999999974 56


Q ss_pred             HHHHHHhCC------CCCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCce
Q psy8729          94 SYQSYLSGM------PWPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRL  140 (190)
Q Consensus        94 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~  140 (190)
                      ..+.|.+.+      ....+++..|.+..+.+.|++.      .+|++++  ||++|++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~l--ID~~G~I  172 (222)
T 3ztl_A          116 SHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFI--IDPNGIL  172 (222)
T ss_dssp             HHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEE--ECTTSEE
T ss_pred             HHHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEE--ECCCCeE
Confidence            677787765      1356777788888999999998      8999999  9999944

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.78  E-value=1e-18  Score=131.07  Aligned_cols=119  Identities=17%  Similarity=0.166  Sum_probs=97.4

Q ss_pred             CCcccceeccCC--Cc--cceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          21 AKKTYNIGLAEG--TV--TTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        21 ~~~~~~~~l~~~--~~--~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      +...|+|.+.+.  +|  ....++.+.+++++||+|| ++||++|+.++|.|++++++|.+.  ++.+++|+.| +.+..
T Consensus         3 G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~Is~d-~~~~~   79 (192)
T 2h01_A            3 QGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER--NVELLGCSVD-SKFTH   79 (192)
T ss_dssp             SSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT--TEEEEEEESS-CHHHH
T ss_pred             CCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEEeC-CHHHH
Confidence            345678888776  66  5555665536889999999 999999999999999999999875  4999999998 57788


Q ss_pred             HHHHhCC----C--CCcccCCchhHHHHHHHcCCC-----CCCeeeeeeecCCCceEEEc
Q psy8729          96 QSYLSGM----P--WPAIPYASETRQSLASLYNVH-----GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        96 ~~~~~~~----~--~~~~~~~~~~~~~~~~~~~v~-----~~P~~~l~~id~~g~~~i~~  144 (190)
                      +.|.+++    +  ...+++..|.+..+.+.||+.     .+|++++  ||++|+++...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~l--iD~~G~i~~~~  137 (192)
T 2h01_A           80 LAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVL--IDKQGVVQHLL  137 (192)
T ss_dssp             HHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEE--ECTTSBEEEEE
T ss_pred             HHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEE--EcCCCEEEEEE
Confidence            8999877    2  245777788788999999999     8999999  99999654443

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.78  E-value=8.9e-19  Score=130.23  Aligned_cols=113  Identities=21%  Similarity=0.182  Sum_probs=96.6

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM  102 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~  102 (190)
                      .|+|++.+.+|+...++.+ +|+++||+|| ++||++|+..+|.|++++++|.++  ++++++|+.| +.+.++.|++++
T Consensus        31 aP~f~l~~~~G~~v~l~d~-~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~--~~~vv~Vs~D-~~~~~~~~~~~~  106 (179)
T 3ixr_A           31 LLNHPLMLSGSTCKTLSDY-TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQI--NATVLGVSRD-SVKSHDSFCAKQ  106 (179)
T ss_dssp             HHHCCEEEGGGEEECGGGG-TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESC-CHHHHHHHHHHH
T ss_pred             CCCeeEECCCCCEEeHHHH-CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCC-CHHHHHHHHHHc
Confidence            7889999888877777776 7889999998 999999999999999999999876  4999999997 577889999988


Q ss_pred             CCCcccCCchhHHHHHHHcCCCC------------CCeeeeeeecCCCceEEE
Q psy8729         103 PWPAIPYASETRQSLASLYNVHG------------IPSLILLAVEAGGRLDVI  143 (190)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~v~~------------~P~~~l~~id~~g~~~i~  143 (190)
                      +. .+|+..|.+..+.+.|++..            .|++|+  ||++|+++.+
T Consensus       107 ~~-~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~l--ID~~G~I~~~  156 (179)
T 3ixr_A          107 GF-TFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFL--IGPTHRIVEA  156 (179)
T ss_dssp             TC-CSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEE--ECTTSBEEEE
T ss_pred             CC-ceEEEECCchHHHHHcCCcccccccCcccCCcceEEEE--ECCCCEEEEE
Confidence            75 57777888889999999853            689999  9999955433

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.78  E-value=3.1e-18  Score=127.16  Aligned_cols=122  Identities=12%  Similarity=0.084  Sum_probs=91.3

Q ss_pred             CCCCCCCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC---
Q psy8729          14 KPGGSKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR---   90 (190)
Q Consensus        14 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~---   90 (190)
                      .+....++...|+|++.+.+|....++.+ +|+++||+||++||++|+.++|.|++++++|+++  ++.+++|++|.   
T Consensus         8 ~~~~~~~~~~~p~f~l~d~~G~~v~l~~~-~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~~~vi~is~d~~~~   84 (180)
T 3kij_A            8 MKFLKPKINSFYAFEVKDAKGRTVSLEKY-KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPS--HFSVLAFPCNQFGE   84 (180)
T ss_dssp             --CCCCCCCCGGGCEEEBTTSCEEEGGGG-TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT--SEEEEEEECCCSTT
T ss_pred             hhhhcCCcCcccceEEecCCCCEecHHHc-CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccC--CeEEEEEECCcccc
Confidence            34455566678999999999888777776 7899999999999999999999999999999876  49999999874   


Q ss_pred             ----CHHHHHHHHhC-CCCCcccCC-----chh-HHHHHHHc--CCCCCCe----eeeeeecCCCceE
Q psy8729          91 ----SESSYQSYLSG-MPWPAIPYA-----SET-RQSLASLY--NVHGIPS----LILLAVEAGGRLD  141 (190)
Q Consensus        91 ----~~~~~~~~~~~-~~~~~~~~~-----~~~-~~~~~~~~--~v~~~P~----~~l~~id~~g~~~  141 (190)
                          +.+.+++|+++ ++.. +|+.     .+. ...+...+  ...++|+    +++  ||++|++.
T Consensus        85 ~~~d~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~l--id~~G~i~  149 (180)
T 3kij_A           85 SEPRPSKEVESFARKNYGVT-FPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYL--VNPEGQVV  149 (180)
T ss_dssp             CCCSCHHHHHHHHHHHHCCC-SCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEE--ECTTSCEE
T ss_pred             CCCCCHHHHHHHHHHhcCCC-CceeeeeeccCccccHHHHHHHhcCCCCccccceEEE--ECCCCCEE
Confidence                78899999998 7642 3331     111 11111111  1346888    999  99999543

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.78  E-value=4.6e-19  Score=129.84  Aligned_cols=119  Identities=14%  Similarity=0.154  Sum_probs=99.2

Q ss_pred             CCCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCC-ChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          18 SKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHW-CPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      ...+...|+|.+.+.+|....++.+ +|++++|+||++| |++|+..+|.|+++++++  .  ++++++|+.| +.+.++
T Consensus        18 ~~~G~~~p~f~l~~~~G~~~~l~~~-~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~--~~~vv~is~d-~~~~~~   91 (167)
T 2jsy_A           18 VKVGDQAPDFTVLTNSLEEKSLADM-KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--G--DVNVYTISAD-LPFAQA   91 (167)
T ss_dssp             CCTTSCCCCCEEEBTTCCEEEHHHH-TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--S--SCEEEEEECS-SGGGTS
T ss_pred             cCCCCcCCceEEECCCCCEeeHHHh-CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--C--CCEEEEEECC-CHHHHH
Confidence            3445667889998888877777776 7899999999999 999999999999999999  3  4899999998 556788


Q ss_pred             HHHhCCCCCcccCCch-hHHHHHHHcCCCC------CCeeeeeeecCCCceEEEc
Q psy8729          97 SYLSGMPWPAIPYASE-TRQSLASLYNVHG------IPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        97 ~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~------~P~~~l~~id~~g~~~i~~  144 (190)
                      +|.+++++..+|+..| .+..+.+.|++..      +|++++  ||++|++....
T Consensus        92 ~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~l--id~~G~i~~~~  144 (167)
T 2jsy_A           92 RWCGANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFV--LDENGKVVYAE  144 (167)
T ss_dssp             CCGGGSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEE--ECTTSCEEEEE
T ss_pred             HHHHhcCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEE--EcCCCcEEEEE
Confidence            8999888767888888 6788999999986      499999  99999554333

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.77  E-value=7.4e-18  Score=128.31  Aligned_cols=77  Identities=12%  Similarity=0.028  Sum_probs=66.5

Q ss_pred             CCcccceeccCCC-ccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCH
Q psy8729          21 AKKTYNIGLAEGT-VTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSE   92 (190)
Q Consensus        21 ~~~~~~~~l~~~~-~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~   92 (190)
                      ....|+|++.+.+ |....++.+ +|+++||+||++||++|+.++|.|++++++|.++  ++++++|++|       ++.
T Consensus        23 ~~~~p~f~l~~~~~G~~v~l~~~-~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~--g~~vv~v~~d~~~~~e~d~~   99 (208)
T 2f8a_A           23 MQSVYAFSARPLAGGEPVSLGSL-RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR--GLVVLGFPCNQFGHQENAKN   99 (208)
T ss_dssp             CCCGGGCEECBTTCSSCEEGGGG-TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTTTCSCH
T ss_pred             cCccCceEeeeCCCCCCccHHHc-CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC--CeEEEEEECCcccccCCCCH
Confidence            3457889998887 877777776 7899999999999999999999999999999876  4999999986       245


Q ss_pred             HHHHHHHh
Q psy8729          93 SSYQSYLS  100 (190)
Q Consensus        93 ~~~~~~~~  100 (190)
                      +++++|++
T Consensus       100 ~~i~~f~~  107 (208)
T 2f8a_A          100 EEILNSLK  107 (208)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            78999997

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=132.79  Aligned_cols=118  Identities=15%  Similarity=0.183  Sum_probs=95.6

Q ss_pred             CCcccceeccC---CCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          21 AKKTYNIGLAE---GTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        21 ~~~~~~~~l~~---~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      +...|+|++.+   +++....++.+ +||++||+|| ++||++|+.++|.|++++++|.+.  ++++++|++| +.+..+
T Consensus        22 G~~aP~f~l~~~~~~~g~~v~l~d~-~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~--~v~vv~Is~D-~~~~~~   97 (211)
T 2pn8_A           22 SMPAPYWEGTAVIDGEFKELKLTDY-RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI--NTEVVACSVD-SQFTHL   97 (211)
T ss_dssp             SCBCCCCEEEEEETTEEEEEEGGGG-TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT--TEEEEEEESS-CHHHHH
T ss_pred             CCcCCCeEeecccCCCCcEEEHHHh-CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECC-CHHHHH
Confidence            44567777765   34555666666 7899999999 999999999999999999999875  5999999997 567788


Q ss_pred             HHHhCC----C--CCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEEc
Q psy8729          97 SYLSGM----P--WPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        97 ~~~~~~----~--~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~~  144 (190)
                      .|++++    +  -..+|+..|.+..+.+.||+.      .+|++++  ||++|+++...
T Consensus        98 ~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~l--ID~~G~I~~~~  155 (211)
T 2pn8_A           98 AWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFI--IDDKGILRQIT  155 (211)
T ss_dssp             HHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEE--ECTTSBEEEEE
T ss_pred             HHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEE--ECCCCEEEEEE
Confidence            999877    2  246777788788999999994      6999999  99999654443

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.77  E-value=1.6e-18  Score=126.69  Aligned_cols=116  Identities=14%  Similarity=0.232  Sum_probs=88.4

Q ss_pred             CCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSE   92 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~   92 (190)
                      .+...|+|++.+.++....++.+ +||+++|+||++||++|+.++|.|+++++++.++  ++.+++|++|       ++.
T Consensus         8 ~g~~~p~f~l~~~~g~~~~l~~~-~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~~   84 (170)
T 2p5q_A            8 NPESVHDFTVKDAKENDVDLSIF-KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ--GLEILAFPCNQFGEEEPGTN   84 (170)
T ss_dssp             --CCGGGCEEEBTTSCEEEGGGG-TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCTTTTCCCSCH
T ss_pred             CCccccceEEEcCCCCEecHHHh-CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC--CEEEEEEECCCCCCCCCCCH
Confidence            45567889998888877777776 7999999999999999999999999999999876  4999999987       367


Q ss_pred             HHHHHHHh-CCCCCcccCC--chhHH----HHH-----HHcCC--CCCC---eeeeeeecCCCceE
Q psy8729          93 SSYQSYLS-GMPWPAIPYA--SETRQ----SLA-----SLYNV--HGIP---SLILLAVEAGGRLD  141 (190)
Q Consensus        93 ~~~~~~~~-~~~~~~~~~~--~~~~~----~~~-----~~~~v--~~~P---~~~l~~id~~g~~~  141 (190)
                      +.++.|++ +++. .+|+.  .|.+.    .+.     ..+++  .++|   ++++  ||++|++.
T Consensus        85 ~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~l--id~~G~i~  147 (170)
T 2p5q_A           85 DQITDFVCTRFKS-EFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFL--VNKDGQVV  147 (170)
T ss_dssp             HHHHHHHHHHTCC-CSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEE--ECTTSCEE
T ss_pred             HHHHHHHHHhcCC-CceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEE--ECCCCCEE
Confidence            88999998 6654 24443  22211    122     23466  7788   9999  99999553

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.77  E-value=1.1e-18  Score=131.48  Aligned_cols=114  Identities=16%  Similarity=0.169  Sum_probs=94.4

Q ss_pred             CCcccceeccCC--Ccc---ceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHH
Q psy8729          21 AKKTYNIGLAEG--TVT---TKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESS   94 (190)
Q Consensus        21 ~~~~~~~~l~~~--~~~---~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~   94 (190)
                      +...|+|++.+.  +|.   ...++.+.+|++++|+|| ++||++|+.++|.|++++++|++.  ++.+++|+.|. .+.
T Consensus         4 G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d~-~~~   80 (198)
T 1zof_A            4 TKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK--GFNVIGVSIDS-EQV   80 (198)
T ss_dssp             TSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT--TEEEEEEESSC-HHH
T ss_pred             CCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEECCC-HHH
Confidence            445778888776  665   455555426899999999 999999999999999999999876  49999999984 678


Q ss_pred             HHHHHhC-------CCCCcccCCchhHHHHHHHcCCC-----CCCeeeeeeecCCCce
Q psy8729          95 YQSYLSG-------MPWPAIPYASETRQSLASLYNVH-----GIPSLILLAVEAGGRL  140 (190)
Q Consensus        95 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~l~~id~~g~~  140 (190)
                      .+.|.++       +++ .+++..|.+..+.+.|++.     .+|++++  ||++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~l--id~~G~i  135 (198)
T 1zof_A           81 HFAWKNTPVEKGGIGQV-SFPMVADITKSISRDYDVLFEEAIALRGAFL--IDKNMKV  135 (198)
T ss_dssp             HHHHHTSCGGGTCCCCC-SSCEEECTTSHHHHHTTCEETTTEECEEEEE--EETTTEE
T ss_pred             HHHHHHhhhhcccccCc-eeEEEECCchHHHHHhCCcccCCcccceEEE--ECCCCEE
Confidence            8899987       443 5677777788999999999     9999999  9999944

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.77  E-value=1.3e-18  Score=132.91  Aligned_cols=119  Identities=16%  Similarity=0.151  Sum_probs=98.4

Q ss_pred             CCCcccceeccCC--Cc--cceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHH
Q psy8729          20 GAKKTYNIGLAEG--TV--TTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESS   94 (190)
Q Consensus        20 ~~~~~~~~~l~~~--~~--~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~   94 (190)
                      .+...|+|.+.+.  ++  ....++.+.+++++||+|| ++||++|+.++|.|++++++|.+.  ++++++|+.| +.+.
T Consensus        23 ~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~D-~~~~   99 (213)
T 2i81_A           23 VGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHER--NVELLGCSVD-SKYT   99 (213)
T ss_dssp             BTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHT--TEEEEEEESS-CHHH
T ss_pred             CCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHH
Confidence            3556788888776  56  5555666536889999999 999999999999999999999875  4999999998 6778


Q ss_pred             HHHHHhCC----C--CCcccCCchhHHHHHHHcCCC-----CCCeeeeeeecCCCceEEE
Q psy8729          95 YQSYLSGM----P--WPAIPYASETRQSLASLYNVH-----GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        95 ~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~v~-----~~P~~~l~~id~~g~~~i~  143 (190)
                      .+.|++++    +  -..+|+..|.+..+.+.||+.     .+|++++  ||++|+++..
T Consensus       100 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~l--ID~~G~i~~~  157 (213)
T 2i81_A          100 HLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVL--IDMNGIVQHL  157 (213)
T ss_dssp             HHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEE--ECTTSBEEEE
T ss_pred             HHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEE--ECCCCEEEEE
Confidence            89999877    1  246788888888999999999     8999999  9999965444

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.77  E-value=1.7e-18  Score=126.51  Aligned_cols=117  Identities=15%  Similarity=0.077  Sum_probs=87.3

Q ss_pred             CCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-------CH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-------SE   92 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-------~~   92 (190)
                      .+...|+|++.+.+|....++.+ +|++++|+||++||++|+.++|.|++++++|.++  ++.+++|++|.       +.
T Consensus         7 ~g~~~p~f~l~~~~G~~~~l~~~-~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~~~~   83 (169)
T 2v1m_A            7 SWNSIYEFTVKDINGVDVSLEKY-RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK--GLRILAFPCNQFGGQEPWAE   83 (169)
T ss_dssp             CCCSGGGCEEEBTTSCEEEGGGG-TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCH
T ss_pred             CCcccccceeecCCCCCccHHHc-CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC--CeEEEEEECCccCCCCCCCH
Confidence            34567889999888877777776 7899999999999999999999999999999876  49999999863       46


Q ss_pred             HHHHHH-HhCCCCCcccCCc--hhHH----HHHH-----HcC-----CCCCCeeeeeeecCCCceEE
Q psy8729          93 SSYQSY-LSGMPWPAIPYAS--ETRQ----SLAS-----LYN-----VHGIPSLILLAVEAGGRLDV  142 (190)
Q Consensus        93 ~~~~~~-~~~~~~~~~~~~~--~~~~----~~~~-----~~~-----v~~~P~~~l~~id~~g~~~i  142 (190)
                      +.++.| .++++. .+|+..  |.+.    .+.+     .+|     +..+|++++  ||++|++..
T Consensus        84 ~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~l--id~~G~i~~  147 (169)
T 2v1m_A           84 AEIKKFVTEKYGV-QFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFL--VDRQGQPVK  147 (169)
T ss_dssp             HHHHHHHHHHHCC-CSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEE--ECTTSCEEE
T ss_pred             HHHHHHHHHhcCC-CCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEE--ECCCCCEEE
Confidence            788999 476664 233332  2111    1111     125     556799999  999995533

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.77  E-value=1.4e-18  Score=131.63  Aligned_cols=116  Identities=12%  Similarity=0.106  Sum_probs=99.3

Q ss_pred             CCCCCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          18 SKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      ...+...|+|.+.+.+|+...++.+ +|++++|+|| ++||++|+.++|.|++++++|  +  ++++++|+.| +.+.++
T Consensus        52 l~~G~~aPdf~l~d~~G~~v~L~d~-~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~--~v~vv~Is~D-~~~~~~  125 (200)
T 3zrd_A           52 PQIGDKAKDFTLVAKDLSDVALSSF-AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--E--NTVVLCISSD-LPFAQS  125 (200)
T ss_dssp             CCTTCBCCCCEEECTTSCEEEGGGG-TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--T--TEEEEEEESS-CHHHHT
T ss_pred             CCCCCCCCCeEEECCCCCEEcHHHh-CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--C--CCEEEEEECC-CHHHHH
Confidence            3446678899999998888888777 7899999999 789999999999999999998  3  4999999998 677888


Q ss_pred             HHHhCCCCCcccCCchh-HHHHHHHcCCC---------CCCeeeeeeecCCCceE
Q psy8729          97 SYLSGMPWPAIPYASET-RQSLASLYNVH---------GIPSLILLAVEAGGRLD  141 (190)
Q Consensus        97 ~~~~~~~~~~~~~~~~~-~~~~~~~~~v~---------~~P~~~l~~id~~g~~~  141 (190)
                      +|.+++++..+++..|. +..+.+.||+.         .+|++++  ||++|+++
T Consensus       126 ~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~l--ID~~G~I~  178 (200)
T 3zrd_A          126 RFCGAEGLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVV--LDGQDNVI  178 (200)
T ss_dssp             TCTTTTTCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEE--ECTTSBEE
T ss_pred             HHHHHcCCCCceEEecCchHHHHHHhCceeecccCCCccccEEEE--ECCCCeEE
Confidence            99998886577888888 88999999986         3699999  99999553

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.77  E-value=1.2e-18  Score=131.08  Aligned_cols=115  Identities=13%  Similarity=0.108  Sum_probs=93.7

Q ss_pred             CCcccceeccCCC-------------c--cceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEE
Q psy8729          21 AKKTYNIGLAEGT-------------V--TTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEII   84 (190)
Q Consensus        21 ~~~~~~~~l~~~~-------------~--~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii   84 (190)
                      +...|+|++.+.+             +  ....++.+ .++++||+|| ++||++|+.++|.|++++++|+++  +++++
T Consensus         7 G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~-~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv   83 (195)
T 2bmx_A            7 GDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEH-PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR--DAQIL   83 (195)
T ss_dssp             TCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSS-TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT--TEEEE
T ss_pred             CCcCCCcCcccccccccccccccccCCCccEeeHHHh-CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC--CCEEE
Confidence            4456777776654             4  45555555 6899999999 999999999999999999999875  59999


Q ss_pred             EeeCCCCHHHHHHHHhCC----CCCcccCCchhHHHHHHHcCCC-----CCCeeeeeeecCCCceEE
Q psy8729          85 FVSSDRSESSYQSYLSGM----PWPAIPYASETRQSLASLYNVH-----GIPSLILLAVEAGGRLDV  142 (190)
Q Consensus        85 ~i~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~l~~id~~g~~~i  142 (190)
                      +|+.|. .+.++.|.+++    ++ .+++..|....+.+.|++.     .+|++++  ||++|++..
T Consensus        84 ~Vs~d~-~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~l--id~~G~i~~  146 (195)
T 2bmx_A           84 GVSIDS-EFAHFQWRAQHNDLKTL-PFPMLSDIKRELSQAAGVLNADGVADRVTFI--VDPNNEIQF  146 (195)
T ss_dssp             EEESSC-HHHHHHHHHHCTTGGGC-CSCEEECTTSHHHHHHTCBCTTSSBCEEEEE--ECTTSBEEE
T ss_pred             EEECCC-HHHHHHHHHHhccccCC-ceeEEeCCchHHHHHhCCcccCCCccceEEE--EcCCCeEEE
Confidence            999985 67888999877    43 5666777778999999999     9999999  999995533

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.77  E-value=3e-18  Score=127.47  Aligned_cols=116  Identities=13%  Similarity=0.062  Sum_probs=89.2

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSES   93 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~   93 (190)
                      +...|+|++.+.+|....++.+ +|+++||+||++||++|+.++|.|++++++|.++  ++.+++|++|       ++.+
T Consensus        24 g~~~p~f~l~~~~G~~~~l~~~-~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~e~~~~~  100 (183)
T 2obi_A           24 ARSMHEFSAKDIDGHMVNLDKY-RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAEC--GLRILAFPCNQFGKQEPGSNE  100 (183)
T ss_dssp             CCSGGGCEEEBTTSCEEEGGGG-TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHH
T ss_pred             cCcccceEEEcCCCCEeeHHHc-CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC--CeEEEEEECCCCCCCCCCCHH
Confidence            5567889998888877777776 7899999999999999999999999999999876  4999999987       3678


Q ss_pred             HHHHHHhCCCCCcccCCc--hhHH----HHHHHc-------C-----CCCCCeeeeeeecCCCceEE
Q psy8729          94 SYQSYLSGMPWPAIPYAS--ETRQ----SLASLY-------N-----VHGIPSLILLAVEAGGRLDV  142 (190)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~-------~-----v~~~P~~~l~~id~~g~~~i  142 (190)
                      .+++|++++++. +|+..  |.+.    .+.+.+       +     +..+|++++  ||++|++..
T Consensus       101 ~~~~~~~~~~~~-~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~l--id~~G~i~~  164 (183)
T 2obi_A          101 EIKEFAAGYNVK-FDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFL--IDKNGCVVK  164 (183)
T ss_dssp             HHHHHHHTTTCC-SEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEE--ECTTSCEEE
T ss_pred             HHHHHHHHcCCC-ceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEE--ECCCCCEEE
Confidence            899999988753 44432  2211    122221       4     445799999  999995533

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=129.73  Aligned_cols=117  Identities=12%  Similarity=0.029  Sum_probs=88.7

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-------CHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-------SES   93 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-------~~~   93 (190)
                      +...|+|++.+.+|....++.+ +|++++|+||++||++|+.++|.|++++++++++  ++++++|++|.       +.+
T Consensus        26 g~~~p~f~l~~~~G~~v~l~~~-~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~is~d~~~~~~~~~~~  102 (185)
T 2gs3_A           26 ARSMHEFSAKDIDGHMVNLDKY-RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC--GLRILAFPCNQFGKQEPGSNE  102 (185)
T ss_dssp             CCCGGGCEEEBTTSCEEEGGGG-TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCTTTTCCCSCHH
T ss_pred             CCCcCCceeEcCCCCEeeHHHc-CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC--CeEEEEEECcccCCCCCCCHH
Confidence            5567889999888877777776 7899999999999999999999999999999876  49999999863       467


Q ss_pred             HHHHHHhCCCCCcccCCc--hhH----HHHHHHc-------CC-----CCCCeeeeeeecCCCceEEE
Q psy8729          94 SYQSYLSGMPWPAIPYAS--ETR----QSLASLY-------NV-----HGIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~-------~v-----~~~P~~~l~~id~~g~~~i~  143 (190)
                      .+++|+++++.. +|+..  |.+    ..+.+.+       |+     ..+|++++  ||++|++...
T Consensus       103 ~~~~~~~~~~~~-~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~l--id~~G~i~~~  167 (185)
T 2gs3_A          103 EIKEFAAGYNVK-FDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFL--IDKNGCVVKR  167 (185)
T ss_dssp             HHHHHHHHTTCC-SEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEE--ECTTSCEEEE
T ss_pred             HHHHHHHHcCCC-CeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEE--ECCCCCEEEe
Confidence            899999888753 44432  111    1122221       43     34799999  9999955333

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.77  E-value=2e-18  Score=127.98  Aligned_cols=118  Identities=10%  Similarity=0.103  Sum_probs=95.9

Q ss_pred             CCCcccceecc-CCCccceeeeeccCCcEEEE-EEEcCCChhhh-hhhHHHHHHHHHHhhcCCcEEEEE-eeCCCCHHHH
Q psy8729          20 GAKKTYNIGLA-EGTVTTKVLSYIESCQVIGL-YFSAHWCPPCK-AFTPQLIETYRKLKEDGYQFEIIF-VSSDRSESSY   95 (190)
Q Consensus        20 ~~~~~~~~~l~-~~~~~~~~~~~~~~~k~vlv-~F~a~wC~~C~-~~~~~l~~l~~~~~~~g~~~~ii~-i~~d~~~~~~   95 (190)
                      .+..+|+|++. +.++....++++.++++++| .||++|||+|+ .++|.|++++++|++.|  +++++ |+.| +.+..
T Consensus        17 vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~g--v~vv~~iS~D-~~~~~   93 (173)
T 3mng_A           17 VGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVACLSVN-DAFVT   93 (173)
T ss_dssp             TTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESS-CHHHH
T ss_pred             CCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC--CEEEEEEcCC-CHHHH
Confidence            35678899998 77777777776336775555 55699999999 59999999999998774  88886 8887 57789


Q ss_pred             HHHHhCCCCC-cccCCchhHHHHHHHcCCC-------------CCCeeeeeeecCCCceEEE
Q psy8729          96 QSYLSGMPWP-AIPYASETRQSLASLYNVH-------------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        96 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~-------------~~P~~~l~~id~~g~~~i~  143 (190)
                      ++|.++++.. .+|+..|.+..++++||+.             ..|++|+  || +|+++.+
T Consensus        94 ~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfv--ID-dG~I~~~  152 (173)
T 3mng_A           94 GEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMV--VQ-DGIVKAL  152 (173)
T ss_dssp             HHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEE--EE-TTEEEEE
T ss_pred             HHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEE--EE-CCEEEEE
Confidence            9999999875 5899999999999999986             3599999  99 9955443

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.77  E-value=4.7e-18  Score=128.45  Aligned_cols=116  Identities=17%  Similarity=0.225  Sum_probs=91.9

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEEcCCChh-hhhhhHHHHHHHHHHhhc-CCcEEEEEeeCCC---CHHHHHHH
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPP-CKAFTPQLIETYRKLKED-GYQFEIIFVSSDR---SESSYQSY   98 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~-g~~~~ii~i~~d~---~~~~~~~~   98 (190)
                      .|+|.+.+.+|....++.+ .|+++||+||++||++ |+.++|.|+++++++.++ +.++.+++|++|.   +.+.++.|
T Consensus        21 ~p~f~l~d~~G~~v~l~~~-~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~   99 (200)
T 2b7k_A           21 GGPFHLEDMYGNEFTEKNL-LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEY   99 (200)
T ss_dssp             CCCCEEEETTSCEEEGGGG-TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHH
T ss_pred             CCCEEEEcCCCCEEeHHHc-CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHH
Confidence            4788888888877777776 7899999999999997 999999999999998864 3469999999984   67889999


Q ss_pred             HhCCC--CCcccCCchhHHHHHHHcCCC-CCC---------------eeeeeeecCCCceEE
Q psy8729          99 LSGMP--WPAIPYASETRQSLASLYNVH-GIP---------------SLILLAVEAGGRLDV  142 (190)
Q Consensus        99 ~~~~~--~~~~~~~~~~~~~~~~~~~v~-~~P---------------~~~l~~id~~g~~~i  142 (190)
                      +++++  |..++...+....+.+.||+. +.|               ++++  ||++|++..
T Consensus       100 ~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~l--iD~~G~i~~  159 (200)
T 2b7k_A          100 LSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYL--MDPEGQFVD  159 (200)
T ss_dssp             HTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEE--ECTTSCEEE
T ss_pred             HHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEE--ECCCCcEEE
Confidence            99886  333444456677899999987 444               7899  999995543

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.77  E-value=1.5e-18  Score=129.82  Aligned_cols=117  Identities=10%  Similarity=0.083  Sum_probs=95.4

Q ss_pred             CCcccceeccCC-Cc--cceeeeeccCCcEEEEEEEc-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          21 AKKTYNIGLAEG-TV--TTKVLSYIESCQVIGLYFSA-HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        21 ~~~~~~~~l~~~-~~--~~~~~~~~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      +...|+|++.+. ++  ....++.+ +|+++||+||+ +||++|+.++|.|++++++|.++  ++++++|+.| +.+.++
T Consensus         4 G~~aP~f~l~~~~~G~~~~v~l~~~-~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~--~v~vv~Is~d-~~~~~~   79 (186)
T 1n8j_A            4 NTKIKPFKNQAFKNGEFIEVTEKDT-EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL--GVDVYSVSTD-THFTHK   79 (186)
T ss_dssp             TCBCCCCEEEEEETTEEEEEEHHHH-TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT--TEEEEEEESS-CHHHHH
T ss_pred             CCcCCCcEeecccCCcceEEEHHHH-CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHC--CCEEEEEECC-CHHHHH
Confidence            446778888776 35  55566666 68999999995 99999999999999999999876  4999999998 567788


Q ss_pred             HHHhCC----CCCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEEc
Q psy8729          97 SYLSGM----PWPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        97 ~~~~~~----~~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~~  144 (190)
                      .|.+++    + ..+|+..|.+..+.+.||+.      .+|++++  ||++|+++...
T Consensus        80 ~~~~~~~~~~~-~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~l--ID~~G~i~~~~  134 (186)
T 1n8j_A           80 AWHSSSETIAK-IKYAMIGDPTGALTRNFDNMREDEGLADRATFV--VDPQGIIQAIE  134 (186)
T ss_dssp             HHHHHCTTGGG-CCSEEEECTTSHHHHHTTCEETTTTEECEEEEE--ECTTSBEEEEE
T ss_pred             HHHHHcCcccC-CceeEEECCchHHHHHhCCccCCCCceeeEEEE--ECCCCeEEEEE
Confidence            999887    4 35677788888999999987      3799999  99999654443

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.76  E-value=6.7e-19  Score=129.15  Aligned_cols=117  Identities=9%  Similarity=0.064  Sum_probs=99.0

Q ss_pred             CCCCCCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          17 GSKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        17 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      ....+...|+|++.+.+|+...++.+ +|++++|+|| ++||++|+..+|.|++++++   .  ++.+++|+.| +.+.+
T Consensus        19 ~l~~G~~aP~f~l~~~~G~~~~l~~~-~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~--~~~vv~is~d-~~~~~   91 (166)
T 3p7x_A           19 QINEGDFAPDFTVLDNDLNQVTLADY-AGKKKLISVVPSIDTGVCDQQTRKFNSDASK---E--EGIVLTISAD-LPFAQ   91 (166)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGGGG-TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---T--TSEEEEEESS-CHHHH
T ss_pred             cCCCCCCCCCeEEEcCCCCEEeHHHh-CCCcEEEEEECCCCCCccHHHHHHHHHHhhc---C--CCEEEEEECC-CHHHH
Confidence            34456678899999988888877777 7889999999 78999999999999988776   2  4899999987 67889


Q ss_pred             HHHHhCCCCCcccCCchh-HHHHHHHcCCCC------CCeeeeeeecCCCceEE
Q psy8729          96 QSYLSGMPWPAIPYASET-RQSLASLYNVHG------IPSLILLAVEAGGRLDV  142 (190)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~------~P~~~l~~id~~g~~~i  142 (190)
                      ++|.+++++..+|+..|. +..+.+.||+..      +|++++  ||++|+++.
T Consensus        92 ~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~l--iD~~G~i~~  143 (166)
T 3p7x_A           92 KRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFV--LDADNKVVY  143 (166)
T ss_dssp             HHHHHHHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEE--ECTTCBEEE
T ss_pred             HHHHHHcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEE--ECCCCeEEE
Confidence            999998887568888888 789999999985      899999  999995533

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.76  E-value=3.7e-18  Score=132.77  Aligned_cols=119  Identities=17%  Similarity=0.199  Sum_probs=97.3

Q ss_pred             CCCCcccceecc---CCCccceeeeeccCCcEEEEEEEc-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHH
Q psy8729          19 KGAKKTYNIGLA---EGTVTTKVLSYIESCQVIGLYFSA-HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESS   94 (190)
Q Consensus        19 ~~~~~~~~~~l~---~~~~~~~~~~~~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~   94 (190)
                      ..+..+|+|++.   ++++....++++ +|+++||+||+ +||++|+.++|.|++++++|.++  ++++++|+.| +.+.
T Consensus        49 ~vG~~aPdF~l~~~~d~~G~~vsLsd~-~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~--gv~vv~Is~D-~~~~  124 (240)
T 3qpm_A           49 KISKPAPQWEGTAVINGEFKELKLSDY-RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAI--NTEVVACSVD-SQFT  124 (240)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEGGGG-TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTT--TEEEEEEESS-CHHH
T ss_pred             CCCCCCCCcEeeeeeCCCCcEEEHHHh-CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEECC-CHHH
Confidence            345677888865   455556666666 78999999998 99999999999999999999876  4999999998 4667


Q ss_pred             HHHHHhCC------CCCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEE
Q psy8729          95 YQSYLSGM------PWPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        95 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~  143 (190)
                      .+.|++++      +-..+|+..|.+..+.+.||+.      .+|++|+  ||++|+++.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~fl--ID~~G~I~~~  183 (240)
T 3qpm_A          125 HLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFI--IDEKGVLRQI  183 (240)
T ss_dssp             HHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEE--ECTTSBEEEE
T ss_pred             HHHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEE--EcCCCeEEEE
Confidence            78888765      1356788888889999999997      6899999  9999966444

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.76  E-value=4e-18  Score=125.70  Aligned_cols=118  Identities=15%  Similarity=0.135  Sum_probs=94.8

Q ss_pred             CCccc-ceeccCCCccceeeeeccCCcEEEEEEEcCCCh-hhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC--CCHHHHH
Q psy8729          21 AKKTY-NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCP-PCKAFTPQLIETYRKLKEDGYQFEIIFVSSD--RSESSYQ   96 (190)
Q Consensus        21 ~~~~~-~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d--~~~~~~~   96 (190)
                      +.+.| +|++.+.+|+...++.+ .||+++|+||++||+ .|...++.|+++++++.+.|.++++++|++|  ++.+.++
T Consensus         4 G~~~P~~f~l~d~~G~~v~l~~~-~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~   82 (170)
T 3me7_A            4 GTYVPGDITLVDSYGNEFQLKNL-KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIK   82 (170)
T ss_dssp             TCBCCTTCEEEETTCCEEEGGGG-TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHH
T ss_pred             CCcCCCCeEEEcCCcCEEchHHh-CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHH
Confidence            34677 88998888887777777 699999999999998 6999999999999999765567999999998  4678899


Q ss_pred             HHHhCCCCCc--ccC----CchhHHHHHHHcCC---------CCCCeeeeeeecCCCceE
Q psy8729          97 SYLSGMPWPA--IPY----ASETRQSLASLYNV---------HGIPSLILLAVEAGGRLD  141 (190)
Q Consensus        97 ~~~~~~~~~~--~~~----~~~~~~~~~~~~~v---------~~~P~~~l~~id~~g~~~  141 (190)
                      +|+++++...  +++    ..+....+++.||+         ...|++++  ||++|+++
T Consensus        83 ~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l--ID~~G~i~  140 (170)
T 3me7_A           83 RFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVV--LSPELQIK  140 (170)
T ss_dssp             HHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEE--ECTTSBEE
T ss_pred             HHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEE--ECCCCeEE
Confidence            9999887432  211    23456788888774         45689999  99999554

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.76  E-value=4.9e-18  Score=130.33  Aligned_cols=119  Identities=14%  Similarity=0.208  Sum_probs=96.6

Q ss_pred             CCCCcccceecc---CCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHH
Q psy8729          19 KGAKKTYNIGLA---EGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESS   94 (190)
Q Consensus        19 ~~~~~~~~~~l~---~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~   94 (190)
                      ..+...|+|.+.   +.++....++.+ .++++||+|| ++||++|+.+++.|++++++|.+.  ++++++|++| +.+.
T Consensus        28 ~~G~~aP~f~l~~~~~~~g~~v~l~d~-~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~--~v~vv~Is~D-~~~~  103 (220)
T 1zye_A           28 AVTQHAPYFKGTAVVSGEFKEISLDDF-KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV--NCEVVAVSVD-SHFS  103 (220)
T ss_dssp             CTTSBCCCCEEEEECSSSEEEEEGGGG-TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT--TEEEEEEESS-CHHH
T ss_pred             cCCCCCCCcEEEeeeCCCCcEEEHHHh-CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECC-CHHH
Confidence            345566777775   345556666666 6799999999 999999999999999999999876  4999999998 5667


Q ss_pred             HHHHHhCC----C--CCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEE
Q psy8729          95 YQSYLSGM----P--WPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        95 ~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~  143 (190)
                      .+.|++++    +  -..+|+..|.+..+.+.|++.      .+|++++  ||++|+++..
T Consensus       104 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~l--iD~~G~I~~~  162 (220)
T 1zye_A          104 HLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFI--IDPNGVIKHL  162 (220)
T ss_dssp             HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEE--ECTTSBEEEE
T ss_pred             HHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEE--ECCCCEEEEE
Confidence            88888876    2  246777788888999999998      9999999  9999955433

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.76  E-value=1.7e-18  Score=129.75  Aligned_cols=115  Identities=13%  Similarity=0.183  Sum_probs=89.8

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-------CHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-------SES   93 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-------~~~   93 (190)
                      +...|+|++.+.+|....++.+ +|+++||+||++||++|+.++|.|++++++|.++  ++++++|++|.       +.+
T Consensus        25 ~~~~p~f~l~~~~G~~~~l~~~-~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~  101 (190)
T 2vup_A           25 ASSIFDFEVLDADHKPYNLVQH-KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ--GFTVLAFPCNQFGGQEPGNEE  101 (190)
T ss_dssp             CCSGGGSCCBBTTSSBCCGGGG-TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TCEEEEEECCCSTTCCCSCHH
T ss_pred             CCcccCeEEEcCCCCEEEHHHc-CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC--CeEEEEEEcCccCCCCCCCHH
Confidence            4567889999888877777766 7899999999999999999999999999999876  49999999983       678


Q ss_pred             HHHHHH-hCCCCCcccCCc--hhHHH----H-----HHHcCCCCCC------eeeeeeecCCCceE
Q psy8729          94 SYQSYL-SGMPWPAIPYAS--ETRQS----L-----ASLYNVHGIP------SLILLAVEAGGRLD  141 (190)
Q Consensus        94 ~~~~~~-~~~~~~~~~~~~--~~~~~----~-----~~~~~v~~~P------~~~l~~id~~g~~~  141 (190)
                      .+++|+ ++++. .+|...  |.+..    +     .+.|++.++|      ++++  ||++|++.
T Consensus       102 ~~~~~~~~~~~~-~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~l--id~~G~i~  164 (190)
T 2vup_A          102 EIKEFVCTKFKA-EFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFL--IDRDGVPV  164 (190)
T ss_dssp             HHHHHHHHHHCC-CSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEE--ECTTSCEE
T ss_pred             HHHHHHHHhcCC-CeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEE--ECCCCcEE
Confidence            899999 76654 244432  21111    1     1346888999      9999  99999543

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.76  E-value=2e-18  Score=127.11  Aligned_cols=117  Identities=13%  Similarity=0.177  Sum_probs=97.0

Q ss_pred             CCCCCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          18 SKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      ...+...|+|++.+.++....++.+ +|++++|+|| ++||++|+.++|.|+++++++  .  ++++++|+.| +.+.++
T Consensus        21 l~~g~~~P~f~l~~~~G~~~~l~~~-~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~--~v~vv~Is~d-~~~~~~   94 (171)
T 2yzh_A           21 LKVGDRAPEAVVVTKDLQEKIVGGA-KDVVQVIITVPSLDTPVCETETKKFNEIMAGM--E--GVDVTVVSMD-LPFAQK   94 (171)
T ss_dssp             CCTTSBCCCEEEEETTSCEEEESSC-CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T--TEEEEEEESS-CHHHHH
T ss_pred             CCCCCcCCceEEECCCCCEeeHHHh-CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--C--CceEEEEeCC-CHHHHH
Confidence            3456678899999888877777776 6899999999 899999999999999999888  3  4999999998 567789


Q ss_pred             HHHhCCCCCcccCCch-hHHHHHHHcCCCC---------CCeeeeeeecCCCceEEE
Q psy8729          97 SYLSGMPWPAIPYASE-TRQSLASLYNVHG---------IPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        97 ~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~---------~P~~~l~~id~~g~~~i~  143 (190)
                      +|.+++++..+++..| .+..+ +.||+..         +|++++  ||++|+++..
T Consensus        95 ~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~l--iD~~G~i~~~  148 (171)
T 2yzh_A           95 RFCESFNIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFI--IDKEGKVAYV  148 (171)
T ss_dssp             HHHHHTTCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEE--ECTTSBEEEE
T ss_pred             HHHHHcCCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEE--EcCCCeEEEE
Confidence            9999888646777777 67778 9999862         699999  9999955433

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.76  E-value=3.2e-18  Score=129.47  Aligned_cols=117  Identities=16%  Similarity=0.176  Sum_probs=95.5

Q ss_pred             CCcccceeccCC--Cc--cceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          21 AKKTYNIGLAEG--TV--TTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        21 ~~~~~~~~l~~~--~~--~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      +...|+|++.+.  ++  ....++.+ .|+++||+|| ++||++|+.++|.|++++++|.+.  ++++++|+.| +.+..
T Consensus         9 G~~aP~f~l~~~~~~g~~~~v~l~~~-~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~--~v~vi~Is~D-~~~~~   84 (202)
T 1uul_A            9 LHPAPDFNETALMPNGTFKKVALTSY-KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI--GCEVLACSMD-SEYSH   84 (202)
T ss_dssp             TSBCCCCEEEEECTTSCEEEEEGGGG-TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT--TEEEEEEESS-CHHHH
T ss_pred             CCcCCCcEeeeeecCCCccEEEHHHh-CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHHH
Confidence            445677777654  44  55556665 6899999999 999999999999999999999875  4999999998 56778


Q ss_pred             HHHHhCC----C--CCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEE
Q psy8729          96 QSYLSGM----P--WPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        96 ~~~~~~~----~--~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~  143 (190)
                      +.|++++    +  -..+|+..|.+..+.+.|++.      ++|++++  ||++|+++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~l--id~~G~i~~~  142 (202)
T 1uul_A           85 LAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFI--IDPKQNLRQI  142 (202)
T ss_dssp             HHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEE--ECTTSBEEEE
T ss_pred             HHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEE--ECCCCEEEEE
Confidence            8999876    2  246777788788999999999      9999999  9999965433

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.76  E-value=2e-18  Score=125.58  Aligned_cols=114  Identities=18%  Similarity=0.243  Sum_probs=95.6

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCc--EEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQ--VIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k--~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      ..+...|+|++.+.+|....++.+ .++  ++||+|| ++||++|+.++|.|+++++++.++  + ++++|+.| +.+.+
T Consensus         8 ~~G~~~P~f~l~~~~G~~v~l~~~-~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~-~vv~is~d-~~~~~   82 (159)
T 2a4v_A            8 EIGDPIPDLSLLNEDNDSISLKKI-TENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY--A-AVFGLSAD-SVTSQ   82 (159)
T ss_dssp             CTTCBCCSCEEECTTSCEEEHHHH-HHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT--C-EEEEEESC-CHHHH
T ss_pred             CCCCCCCCeEEECCCCCEEeHHHH-hCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhC--C-cEEEEeCC-CHHHH
Confidence            445677889998888877777666 344  8899987 999999999999999999999876  3 89999988 57788


Q ss_pred             HHHHhCCCCCcccCCchhHHHHHHHcCCCCCC------eeeeeeecCCCceE
Q psy8729          96 QSYLSGMPWPAIPYASETRQSLASLYNVHGIP------SLILLAVEAGGRLD  141 (190)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P------~~~l~~id~~g~~~  141 (190)
                      ++|.+++++ .+|+..|.+..+.+.||+...|      ++++  | ++|+++
T Consensus        83 ~~~~~~~~~-~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~l--i-~~G~i~  130 (159)
T 2a4v_A           83 KKFQSKQNL-PYHLLSDPKREFIGLLGAKKTPLSGSIRSHFI--F-VDGKLK  130 (159)
T ss_dssp             HHHHHHHTC-SSEEEECTTCHHHHHHTCBSSSSSCBCCEEEE--E-ETTEEE
T ss_pred             HHHHHHhCC-CceEEECCccHHHHHhCCcccccCCccceEEE--E-cCCEEE
Confidence            999998875 5777788888999999999988      8999  9 999543

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.75  E-value=1.3e-18  Score=128.77  Aligned_cols=117  Identities=15%  Similarity=0.123  Sum_probs=93.0

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCC-ChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHW-CPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      ..+...|+|.+.+.++....++.+ +++++||+||++| |++|+.++|.|++++++   .  ++.+++|+.| +.+..++
T Consensus        19 ~~G~~~P~f~l~~~~G~~v~l~~~-~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~--~v~vv~Is~D-~~~~~~~   91 (175)
T 1xvq_A           19 AVGSPAPAFTLTGGDLGVISSDQF-RGKSVLLNIFPSVDTPVCATSVRTFDERAAA---S--GATVLCVSKD-LPFAQKR   91 (175)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGG-TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---T--TCEEEEEESS-CHHHHTT
T ss_pred             CcCCcCCCeEEECCCCCEEeHHHc-CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---c--CCEEEEEECC-CHHHHHH
Confidence            445677889999888877777776 7899999999999 99999999999999887   2  4899999997 5667788


Q ss_pred             HHhCCCCCcccCCchhHHHHHHHcCCCCC---------CeeeeeeecCCCceEEEc
Q psy8729          98 YLSGMPWPAIPYASETRQSLASLYNVHGI---------PSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------P~~~l~~id~~g~~~i~~  144 (190)
                      |++++++..+++..|.+..+.+.|++...         |++++  ||++|++....
T Consensus        92 ~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~l--id~~G~I~~~~  145 (175)
T 1xvq_A           92 FCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVV--IGADGNVAYTE  145 (175)
T ss_dssp             CC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEE--ECTTSBEEEEE
T ss_pred             HHHHcCCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEE--ECCCCeEEEEE
Confidence            88888865678888877889999999877         89999  99999554333

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.75  E-value=3.2e-18  Score=132.84  Aligned_cols=114  Identities=14%  Similarity=0.202  Sum_probs=94.4

Q ss_pred             CCcccceeccCC-Ccc--ceeeee-ccCCcEEEEEEE-cCCChhhh-hhhHHHHHHHHHHhhcCCcE-EEEEeeCCCCHH
Q psy8729          21 AKKTYNIGLAEG-TVT--TKVLSY-IESCQVIGLYFS-AHWCPPCK-AFTPQLIETYRKLKEDGYQF-EIIFVSSDRSES   93 (190)
Q Consensus        21 ~~~~~~~~l~~~-~~~--~~~~~~-~~~~k~vlv~F~-a~wC~~C~-~~~~~l~~l~~~~~~~g~~~-~ii~i~~d~~~~   93 (190)
                      +...|+|++.+. ++.  ...++. + +|+++||.|| ++|||+|+ .++|.|++++++|.+.|  + ++++|+.| +.+
T Consensus         6 G~~aP~f~l~~~~~g~~~~v~l~~~~-~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~--~~~vv~is~d-~~~   81 (241)
T 1nm3_A            6 GKKVPQVTFRTRQGDKWVDVTTSELF-DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYG--VDDILVVSVN-DTF   81 (241)
T ss_dssp             TSBCCCCEEEEEETTEEEEEEHHHHH-TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTT--CCEEEEEESS-CHH
T ss_pred             CCCCCCeEEEcccCCCceeecHHHHh-CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEEcC-CHH
Confidence            456778888764 443  445555 4 7889999999 99999999 99999999999998764  8 89999987 577


Q ss_pred             HHHHHHhCCCCCcccCCchhHHHHHHHcCCC-----------CCCeeeeeeecCCCceE
Q psy8729          94 SYQSYLSGMPWPAIPYASETRQSLASLYNVH-----------GIPSLILLAVEAGGRLD  141 (190)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----------~~P~~~l~~id~~g~~~  141 (190)
                      ..+.|.+++++..+|+..|.+..+.+.||+.           ..|++++  | ++|+++
T Consensus        82 ~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~l--i-~~G~i~  137 (241)
T 1nm3_A           82 VMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSML--V-KNGVVE  137 (241)
T ss_dssp             HHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEE--E-ETTEEE
T ss_pred             HHHHHHHhcCCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEE--E-ECCEEE
Confidence            8999999998766899999899999999986           4599999  9 999443

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.75  E-value=2e-18  Score=129.10  Aligned_cols=120  Identities=13%  Similarity=0.170  Sum_probs=96.1

Q ss_pred             CCCCCcccceeccCC--Cc-cceeeee-ccCCcE-EEEEEEcCCChhhhh-hhHHHHHHHHHHhhcCCcEE-EEEeeCCC
Q psy8729          18 SKGAKKTYNIGLAEG--TV-TTKVLSY-IESCQV-IGLYFSAHWCPPCKA-FTPQLIETYRKLKEDGYQFE-IIFVSSDR   90 (190)
Q Consensus        18 ~~~~~~~~~~~l~~~--~~-~~~~~~~-~~~~k~-vlv~F~a~wC~~C~~-~~~~l~~l~~~~~~~g~~~~-ii~i~~d~   90 (190)
                      ...+..+|+|++.+.  ++ ....++. + +|++ +|+.||++|||+|+. ++|.|++++++|+++|  +. +++|+.| 
T Consensus        26 l~vG~~aPdf~l~~~~~~G~~~v~L~d~~-~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d-  101 (184)
T 3uma_A           26 IAVGDKLPNATFKEKTADGPVEVTTELLF-KGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARG--VDDIAVVAVN-  101 (184)
T ss_dssp             CCTTCBCCCCEEEEEETTEEEEEEHHHHH-TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESS-
T ss_pred             CCCCCCCCCcEeecccCCCceEEeHHHHh-CCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcC--CCEEEEEECC-
Confidence            345667889998876  66 5566666 4 5665 556677999999999 7999999999998874  77 9999997 


Q ss_pred             CHHHHHHHHhCCCCC-cccCCchhHHHHHHHcCCC-----------CCCeeeeeeecCCCceEEEc
Q psy8729          91 SESSYQSYLSGMPWP-AIPYASETRQSLASLYNVH-----------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        91 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~-----------~~P~~~l~~id~~g~~~i~~  144 (190)
                      +.+..+.|.+++++. .+|+..|.+..+.++||+.           ..|++++  |+ +|+++.+.
T Consensus       102 ~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfi--Id-dG~I~~~~  164 (184)
T 3uma_A          102 DLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSML--VE-DGVVKALN  164 (184)
T ss_dssp             CHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEE--EE-TTEEEEEE
T ss_pred             CHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEE--EC-CCEEEEEE
Confidence            577889999988875 5899999999999999985           3588999  96 99554333

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.74  E-value=1.8e-18  Score=126.78  Aligned_cols=114  Identities=24%  Similarity=0.328  Sum_probs=91.4

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChh-hhhhhHHHHHHHHHHhhcC-CcEEEEEeeCCC---CHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPP-CKAFTPQLIETYRKLKEDG-YQFEIIFVSSDR---SESSY   95 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~g-~~~~ii~i~~d~---~~~~~   95 (190)
                      +...|+|++.+.++ ...++.+ ++++++|+||++||++ |+.++|.|++++++++++| .++.+++|++|.   +.+.+
T Consensus        13 G~~~p~f~l~~~~g-~~~l~~~-~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~   90 (172)
T 2k6v_A           13 NPKPVDFALEGPQG-PVRLSQF-QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVA   90 (172)
T ss_dssp             EEEECCCEEECSSS-EEEGGGS-TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHH
T ss_pred             CCCCCCeEEEcCCC-CCcHHHh-CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHH
Confidence            34578889988888 6666665 7999999999999997 9999999999999987642 259999999984   46889


Q ss_pred             HHHHhCCCCCcccCCchhH---HHHHHHcCC---------------CCCCeeeeeeecCCCce
Q psy8729          96 QSYLSGMPWPAIPYASETR---QSLASLYNV---------------HGIPSLILLAVEAGGRL  140 (190)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~v---------------~~~P~~~l~~id~~g~~  140 (190)
                      +.|+++++. .+++..+..   ..+.+.|++               ..+|++++  +| +|++
T Consensus        91 ~~~~~~~~~-~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~l--id-~G~i  149 (172)
T 2k6v_A           91 DRYAKAFHP-SFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFV--VK-EGRL  149 (172)
T ss_dssp             HHHHHHHCT-TEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEE--EE-TTEE
T ss_pred             HHHHHHhCC-CcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEE--EE-CCEE
Confidence            999998874 455555554   577777774               57899999  99 9944

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.74  E-value=3.6e-17  Score=125.13  Aligned_cols=87  Identities=13%  Similarity=0.069  Sum_probs=71.9

Q ss_pred             CCCCcccceeccCCC-ccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------C
Q psy8729          19 KGAKKTYNIGLAEGT-VTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------R   90 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~   90 (190)
                      ......|+|++.+.+ |....++.+ +||++||+|||+||++|+ ++|.|++++++|.++|  +++++|+++       .
T Consensus        30 ~~~~~~pdF~l~d~~~G~~v~Lsd~-~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g--~~Vlgvs~d~f~~~e~~  105 (215)
T 2i3y_A           30 DEKGTIYDYEAIALNKNEYVSFKQY-VGKHILFVNVATYCGLTA-QYPELNALQEELKPYG--LVVLGFPCNQFGKQEPG  105 (215)
T ss_dssp             CCCCCGGGCEEEBSSSSCEEEGGGG-TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCS
T ss_pred             cccCCcCCcEeeeCCCCCEEcHHHh-CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCC--eEEEEEEccccCcCCCC
Confidence            334568899999888 877777777 899999999999999999 9999999999998764  999999975       2


Q ss_pred             CHHHHHHHHh------CCCCCcccCC
Q psy8729          91 SESSYQSYLS------GMPWPAIPYA  110 (190)
Q Consensus        91 ~~~~~~~~~~------~~~~~~~~~~  110 (190)
                      +.+++++|++      +++. .+|+.
T Consensus       106 ~~~~i~~f~~~~~~~~~~~~-~fpll  130 (215)
T 2i3y_A          106 DNKEILPGLKYVRPGGGFVP-SFQLF  130 (215)
T ss_dssp             CHHHHHHHHHHTSSCTTCCC-SSEEB
T ss_pred             CHHHHHHHHHhccchhccCc-cceeE
Confidence            4578899998      7764 45554

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.74  E-value=3.9e-18  Score=125.99  Aligned_cols=115  Identities=15%  Similarity=0.204  Sum_probs=91.3

Q ss_pred             CcccceeccCC----Cc-----cceeeeeccCC-cEEEEEEEcCCChhhhhh-hHHHHHHHHHHhhcCCcEE-EEEeeCC
Q psy8729          22 KKTYNIGLAEG----TV-----TTKVLSYIESC-QVIGLYFSAHWCPPCKAF-TPQLIETYRKLKEDGYQFE-IIFVSSD   89 (190)
Q Consensus        22 ~~~~~~~l~~~----~~-----~~~~~~~~~~~-k~vlv~F~a~wC~~C~~~-~~~l~~l~~~~~~~g~~~~-ii~i~~d   89 (190)
                      ...|+|++.+.    +|     ....++.+.++ +++|+.||++|||+|+.+ +|.|++++++|.++|  +. +++|+.|
T Consensus        11 ~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g--~~~vv~Is~d   88 (171)
T 2pwj_A           11 SAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKG--VDSVICVAIN   88 (171)
T ss_dssp             CCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTT--CSEEEEEESS
T ss_pred             CcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCC
Confidence            45777887765    34     55555553245 577888999999999999 999999999998764  77 9999987


Q ss_pred             CCHHHHHHHHhCCCC-CcccCCchhHHHHHHHcCCCC-----------CCeeeeeeecCCCceEE
Q psy8729          90 RSESSYQSYLSGMPW-PAIPYASETRQSLASLYNVHG-----------IPSLILLAVEAGGRLDV  142 (190)
Q Consensus        90 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~-----------~P~~~l~~id~~g~~~i  142 (190)
                       +.+.++.|.+++++ ..+|+..|.+..+.+.||+..           .|+.++  |+ +|+++.
T Consensus        89 -~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~--I~-~G~I~~  149 (171)
T 2pwj_A           89 -DPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAY--VV-DGKVKA  149 (171)
T ss_dssp             -CHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEE--EE-TTEEEE
T ss_pred             -CHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEE--EE-CCEEEE
Confidence             56789999999987 378888999999999999852           567888  88 995433

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.73  E-value=1.4e-17  Score=130.44  Aligned_cols=118  Identities=15%  Similarity=0.184  Sum_probs=96.9

Q ss_pred             CCCcccceecc---CCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          20 GAKKTYNIGLA---EGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        20 ~~~~~~~~~l~---~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      .+..+|+|.+.   ++++....++++ +|+++||+|| ++||++|..++|.|++++++|.++  ++++++|++| +.+..
T Consensus        64 vG~~aPdF~l~~l~d~~G~~vsLsd~-kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~--gv~vv~IS~D-~~~~~  139 (254)
T 3tjj_A           64 ISKPAPYWEGTAVIDGEFKELKLTDY-RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI--NTEVVACSVD-SQFTH  139 (254)
T ss_dssp             TTSBCCCCEEEEEETTEEEEEEGGGG-TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTT--TEEEEEEESS-CHHHH
T ss_pred             CCCCCCCcEeeeecCCCCcEEeHHHH-CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEcCC-CHHHH
Confidence            45567888865   555666667776 7899999999 999999999999999999999876  4999999998 56677


Q ss_pred             HHHHhCC------CCCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEE
Q psy8729          96 QSYLSGM------PWPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        96 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~  143 (190)
                      +.|++++      +-..+|+..|.+..+.+.||+.      .+|++|+  ||++|+++.+
T Consensus       140 ~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tfl--ID~~G~I~~~  197 (254)
T 3tjj_A          140 LAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFI--IDDKGILRQI  197 (254)
T ss_dssp             HHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEE--ECTTSBEEEE
T ss_pred             HHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEE--ECCCCeEEEE
Confidence            8888865      1346788888889999999985      5899999  9999966444

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.71  E-value=1.1e-16  Score=118.13  Aligned_cols=120  Identities=10%  Similarity=0.108  Sum_probs=90.6

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCCh-hhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC---CCHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCP-PCKAFTPQLIETYRKLKEDGYQFEIIFVSSD---RSESSYQ   96 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d---~~~~~~~   96 (190)
                      +.+.|+|+|.+.+|+...++++ +||++||+||++||+ .|...++.|.++++.+.+.+.++++++|++|   ++.+.++
T Consensus         9 ~~~~PdF~L~d~~G~~v~l~d~-~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~   87 (170)
T 4hde_A            9 NWDLETFQFTNQDGKPFGTKDL-KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLK   87 (170)
T ss_dssp             CBCCCCCEEECTTSCEEEHHHH-TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHH
T ss_pred             CCcCCCcEEECCCCCEEeHHHh-CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHH
Confidence            3467899999999988888887 899999999999998 7999999999999999888778999999998   4578899


Q ss_pred             HHHhCCCC--CcccCCc-----hhHHHHHHHcCCC----------CCCeeeeeeecCCCceEEE
Q psy8729          97 SYLSGMPW--PAIPYAS-----ETRQSLASLYNVH----------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        97 ~~~~~~~~--~~~~~~~-----~~~~~~~~~~~v~----------~~P~~~l~~id~~g~~~i~  143 (190)
                      .|+++++.  ..+.++.     +........|++.          -.|++++  ||++|+++..
T Consensus        88 ~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~l--iD~~G~i~~~  149 (170)
T 4hde_A           88 AFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYL--IDQNGKVMKK  149 (170)
T ss_dssp             HHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEE--ECTTSCEEEE
T ss_pred             HHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEE--EcCCCeEEEE
Confidence            99998753  2222211     1122223334332          2478899  9999965433

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.71  E-value=1.6e-16  Score=120.93  Aligned_cols=85  Identities=12%  Similarity=0.006  Sum_probs=69.9

Q ss_pred             CCcccceeccCCC-ccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCH
Q psy8729          21 AKKTYNIGLAEGT-VTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSE   92 (190)
Q Consensus        21 ~~~~~~~~l~~~~-~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~   92 (190)
                      ....|+|++.+.+ |....++.+ +||++||+||++||++| .++|.|++++++|.++|  +++++|++|       ++.
T Consensus        14 ~~~~pdF~l~d~~~G~~v~Ls~~-kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g--~~vlgvs~d~f~~~e~~~~   89 (207)
T 2r37_A           14 SGTIYEYGALTIDGEEYIPFKQY-AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFG--LVILGFPCNQFGKQEPGEN   89 (207)
T ss_dssp             -CCGGGCEEEBTTSSCEEEGGGG-TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGT--EEEEEEECCCBTTCCCSCH
T ss_pred             cCccCCeEeeeCCCCCEEcHHHh-CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCC--EEEEEEECcccCcCCCCCH
Confidence            3457889999888 777777777 89999999999999999 79999999999998764  999999975       245


Q ss_pred             HHHHHHHh------CCCCCcccCC
Q psy8729          93 SSYQSYLS------GMPWPAIPYA  110 (190)
Q Consensus        93 ~~~~~~~~------~~~~~~~~~~  110 (190)
                      ++++.|++      +++. .+|+.
T Consensus        90 ~~i~~f~~~~~~~~~~~~-~fp~l  112 (207)
T 2r37_A           90 SEILPTLKYVRPGGGFVP-NFQLF  112 (207)
T ss_dssp             HHHHHHHHHTSSCTTCCC-SSEEB
T ss_pred             HHHHHHHHhcchhhccCc-cceee
Confidence            78899998      7764 45544

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.70  E-value=7.2e-17  Score=124.90  Aligned_cols=119  Identities=11%  Similarity=0.080  Sum_probs=94.5

Q ss_pred             CCCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      .+...|+|++.+.+| ...++++..++++||+|| ++|||.|..+++.|++++++|.++  ++++++|++|. .+..+.|
T Consensus         5 iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~--~v~vigIS~D~-~~~~~~~   80 (233)
T 2v2g_A            5 LGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR--GVKLIALSCDN-VADHKEW   80 (233)
T ss_dssp             TTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHT--TEEEEEEESSC-HHHHHHH
T ss_pred             CCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHc--CCEEEEEcCCC-HHHHHHH
Confidence            345678888888777 555555533348999998 999999999999999999999886  49999999984 5566777


Q ss_pred             Hh------CCC-CCcccCCchhHHHHHHHcCCC------------CCCeeeeeeecCCCceEEEc
Q psy8729          99 LS------GMP-WPAIPYASETRQSLASLYNVH------------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        99 ~~------~~~-~~~~~~~~~~~~~~~~~~~v~------------~~P~~~l~~id~~g~~~i~~  144 (190)
                      ++      +++ -..+|+..|.+..+.+.||+.            .+|++|+  ||++|+++...
T Consensus        81 ~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fi--ID~~G~I~~~~  143 (233)
T 2v2g_A           81 SEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFI--IGPDKKLKLSI  143 (233)
T ss_dssp             HHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEE--ECTTSBEEEEE
T ss_pred             HHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEE--ECCCCEEEEEE
Confidence            77      452 346788888888999999985            5899999  99999665443

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.69  E-value=1.3e-16  Score=122.83  Aligned_cols=118  Identities=10%  Similarity=0.073  Sum_probs=91.0

Q ss_pred             CCCcccceeccCCCccceeeeeccCCc-EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLSYIESCQ-VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~k-~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      .+...|+|++.+.+| ...++++..++ ++|+.||++||+.|..+++.|++++++|.++  ++++++|++|. .+..+.|
T Consensus         7 ~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~--~v~vi~IS~D~-~~~~~~~   82 (224)
T 1prx_A            7 LGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR--NVKLIALSIDS-VEDHLAW   82 (224)
T ss_dssp             TTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSC-HHHHHHH
T ss_pred             CcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHC--CCEEEEEcCCC-HHHHHHH
Confidence            455678888888777 55555553332 5666678999999999999999999999876  49999999984 4556666


Q ss_pred             HhC----------CCCCcccCCchhHHHHHHHcCCC------------CCCeeeeeeecCCCceEEEc
Q psy8729          99 LSG----------MPWPAIPYASETRQSLASLYNVH------------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        99 ~~~----------~~~~~~~~~~~~~~~~~~~~~v~------------~~P~~~l~~id~~g~~~i~~  144 (190)
                      .+.          .+ ..+|+..|.+..+.+.||+.            .+|++|+  ||++|+++...
T Consensus        83 ~~~i~~~~~~~~~~~-~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fi--ID~~G~I~~~~  147 (224)
T 1prx_A           83 SKDINAYNSEEPTEK-LPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFV--FGPDKKLKLSI  147 (224)
T ss_dssp             HHHHHHHTTSCCCSC-CSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEE--ECTTSBEEEEE
T ss_pred             HHHHHHhhCcccccC-cCcceeecCchHHHHHhCCCCcccccCCCccccceEEEE--ECCCCEEEEEE
Confidence            654          33 46788888888999999984            4799999  99999665443

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.66  E-value=2.8e-16  Score=120.61  Aligned_cols=117  Identities=12%  Similarity=0.087  Sum_probs=90.3

Q ss_pred             CCCcccceeccCC--CccceeeeeccCCc-E-EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          20 GAKKTYNIGLAEG--TVTTKVLSYIESCQ-V-IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        20 ~~~~~~~~~l~~~--~~~~~~~~~~~~~k-~-vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      .+...|+|++.+.  +| ...++++ .|+ + +|+.||++||+.|..+++.|++++++|.++  ++++++|++|. .+..
T Consensus         5 iG~~aP~F~l~~~~~~G-~v~l~d~-~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~--~v~vi~vS~D~-~~~~   79 (220)
T 1xcc_A            5 LGATFPNFTAKASGIDG-DFELYKY-IENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL--NCKLIGFSCNS-KESH   79 (220)
T ss_dssp             TTCBCCCCEECBTTCSS-CEEHHHH-TTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT--TEEEEEEESSC-HHHH
T ss_pred             CCCCCCCcEeecccCCC-cEeHHHH-cCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCC-HHHH
Confidence            3456788888877  77 4555555 455 4 555568999999999999999999999876  49999999984 4455


Q ss_pred             HHHHh-------CCCCCcccCCchhHHHHHHHcCCC------------CCCeeeeeeecCCCceEEEc
Q psy8729          96 QSYLS-------GMPWPAIPYASETRQSLASLYNVH------------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        96 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~------------~~P~~~l~~id~~g~~~i~~  144 (190)
                      +.|.+       +.+ ..+|+..|.+..+.+.||+.            .+|++++  ||++|+++...
T Consensus        80 ~~~~~~i~~~~~~~~-~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fl--ID~~G~I~~~~  144 (220)
T 1xcc_A           80 DKWIEDIKYYGKLNK-WEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFF--ISPEKKIKATV  144 (220)
T ss_dssp             HHHHHHHHHHHTCSC-CCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEE--ECTTSBEEEEE
T ss_pred             HHHHHHHHHHhcCCC-CcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEE--ECCCCEEEEEE
Confidence            66665       344 36788888888999999983            4799999  99999765443

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.66  E-value=1.7e-16  Score=121.72  Aligned_cols=115  Identities=16%  Similarity=0.127  Sum_probs=95.4

Q ss_pred             CCCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCC-Chhhh-----hhhHHHHHHHHHHhhcCCcEEEEEeeCCCC
Q psy8729          18 SKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHW-CPPCK-----AFTPQLIETYRKLKEDGYQFEIIFVSSDRS   91 (190)
Q Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~w-C~~C~-----~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~   91 (190)
                      ...+..+|+|+|.+.++....++.+ .|+++||+||.+| ||.|.     .+++.|+++   +  .  ++.+++||.| +
T Consensus        22 l~vG~~APdFtL~d~~G~~vsLsd~-~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~--gv~VvgIS~D-s   92 (224)
T 3keb_A           22 PRKGDYLPSFMLVDDQKHDAALESF-SHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--P--HLKLIVITVD-S   92 (224)
T ss_dssp             CCTTCBCCCCEEEETTSCEEEGGGG-TTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--T--TSEEEEEESS-C
T ss_pred             CCCCCCCCCeEEECCCCCEEeHHHh-CCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--C--CCEEEEEECC-C
Confidence            3446678999999888877777776 7889999999888 99999     888888766   4  3  4889999987 6


Q ss_pred             HHHHHHHHhCCCCCcccCCchh-HHHHHHHcCCCC---------CCeeeeeeecCCCceEEE
Q psy8729          92 ESSYQSYLSGMPWPAIPYASET-RQSLASLYNVHG---------IPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~---------~P~~~l~~id~~g~~~i~  143 (190)
                      .+..+.|.+++++..+++..|. +..+.+.||+..         .|++|+  ||++|+++..
T Consensus        93 ~~~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfv--ID~dG~I~~~  152 (224)
T 3keb_A           93 PSSLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIIL--ADAANVVHYS  152 (224)
T ss_dssp             HHHHHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEE--ECTTCBEEEE
T ss_pred             HHHHHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEE--EcCCCEEEEE
Confidence            7889999999987678999997 689999999864         799999  9999965443

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.64  E-value=7.7e-16  Score=104.85  Aligned_cols=65  Identities=23%  Similarity=0.548  Sum_probs=56.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+|||+||++|+.+.|.+.++++.++    ++.++.|++|.                       ...++++|+|
T Consensus        19 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~d~-----------------------~~~l~~~~~V   71 (105)
T 3zzx_A           19 GNKLVVIDFYATWCGPCKMIAPKLEELSQSMS----DVVFLKVDVDE-----------------------CEDIAQDNQI   71 (105)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TEEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCCCccCCCcchhhhhhccC----CeEEEEEeccc-----------------------CHHHHHHcCC
Confidence            57899999999999999999999999988874    37788887775                       3578999999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++||+++  + ++|
T Consensus        72 ~~~PT~~~--~-~~G   83 (105)
T 3zzx_A           72 ACMPTFLF--M-KNG   83 (105)
T ss_dssp             CBSSEEEE--E-ETT
T ss_pred             CeecEEEE--E-ECC
Confidence            99999999  7 678

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.64  E-value=6.7e-16  Score=120.48  Aligned_cols=117  Identities=12%  Similarity=0.172  Sum_probs=89.6

Q ss_pred             CCcccceeccCCCccceee-eec-cCCcE-EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVL-SYI-ESCQV-IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~-~~~-~~~k~-vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      +...|+|++.+..|. ..+ +++ .+|++ +|++||++||+.|..+++.|++++++|.++  ++++++||+|. .+..+.
T Consensus         8 G~~aPdF~l~~~~G~-v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~--gv~VI~VS~Ds-~~~~~~   83 (249)
T 3a2v_A            8 GERFPEMEVTTDHGV-IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL--GVDLIGLSVDS-VFSHIK   83 (249)
T ss_dssp             TSBCCCEEEEETTEE-EEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHT--TEEEEEEESSC-HHHHHH
T ss_pred             CCCCCCeEEEcCCCC-EecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhC--CcEEEEEECCC-HHHHHH
Confidence            456788888877763 334 444 15675 556789999999999999999999999886  49999999984 444444


Q ss_pred             HHhC----CC-CCcccCCchhHHHHHHHcCCC-------CCCeeeeeeecCCCceEEE
Q psy8729          98 YLSG----MP-WPAIPYASETRQSLASLYNVH-------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        98 ~~~~----~~-~~~~~~~~~~~~~~~~~~~v~-------~~P~~~l~~id~~g~~~i~  143 (190)
                      |.+.    .+ -..+|+..|.+..+.+.||+.       ++|++++  ||++|+++..
T Consensus        84 w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fI--ID~dG~I~~~  139 (249)
T 3a2v_A           84 WKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFI--VDARGVIRTM  139 (249)
T ss_dssp             HHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEE--ECTTSBEEEE
T ss_pred             HHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEE--ECCCCeEEEE
Confidence            5442    11 246788888889999999997       8999999  9999966444

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.64  E-value=6e-16  Score=109.97  Aligned_cols=69  Identities=28%  Similarity=0.480  Sum_probs=61.4

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+.++++.++++   +.++.|++|.                       ...+++.|++
T Consensus        50 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~-----------------------~~~~~~~~~v  103 (141)
T 3hxs_A           50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNVDK-----------------------EPELARDFGI  103 (141)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc---eEEEEEECCC-----------------------CHHHHHHcCC
Confidence            5899999999999999999999999999998754   8888888875                       3578999999


Q ss_pred             CCCCeeeeeeecCCCce
Q psy8729         124 HGIPSLILLAVEAGGRL  140 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~~  140 (190)
                      .++|++++  ++++|++
T Consensus       104 ~~~Pt~~~--~~~~g~~  118 (141)
T 3hxs_A          104 QSIPTIWF--VPMKGEP  118 (141)
T ss_dssp             CSSSEEEE--ECSSSCC
T ss_pred             CCcCEEEE--EeCCCCE
Confidence            99999999  9999954

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.63  E-value=9.1e-16  Score=107.07  Aligned_cols=72  Identities=17%  Similarity=0.364  Sum_probs=61.6

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.+.++++++..   ++.++.|+.+.+.                     +..++++|+
T Consensus        24 ~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~v~~~~d~---------------------~~~~~~~~~   79 (126)
T 2l57_A           24 KEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG---KFNIYYARLEEEK---------------------NIDLAYKYD   79 (126)
T ss_dssp             CSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS---SCEEEEEETTSSH---------------------HHHHHHHTT
T ss_pred             hCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC---CeEEEEEeCCCCc---------------------hHHHHHHcC
Confidence            3788999999999999999999999999998863   4888888843222                     568899999


Q ss_pred             CCCCCeeeeeeecCCCce
Q psy8729         123 VHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~~  140 (190)
                      +.++|++++  ++++|++
T Consensus        80 v~~~Pt~~~--~~~~G~~   95 (126)
T 2l57_A           80 ANIVPTTVF--LDKEGNK   95 (126)
T ss_dssp             CCSSSEEEE--ECTTCCE
T ss_pred             CcceeEEEE--ECCCCCE
Confidence            999999999  9989954

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.63  E-value=1.7e-15  Score=106.19  Aligned_cols=67  Identities=27%  Similarity=0.539  Sum_probs=59.6

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.++++++++++   ++.++.|++|.                       ...++++|+
T Consensus        40 ~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d~-----------------------~~~l~~~~~   93 (128)
T 3ul3_B           40 MKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK---RIYLLKVDLDK-----------------------NESLARKFS   93 (128)
T ss_dssp             SCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GEEEEEEEGGG-----------------------CHHHHHHTT
T ss_pred             ccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CeEEEEEECCC-----------------------CHHHHHHcC
Confidence            3799999999999999999999999999999875   48888888774                       357899999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      +.++|++++  + ++|
T Consensus        94 v~~~Pt~~~--~-~~G  106 (128)
T 3ul3_B           94 VKSLPTIIL--L-KNK  106 (128)
T ss_dssp             CCSSSEEEE--E-ETT
T ss_pred             CCCcCEEEE--E-ECC
Confidence            999999999  8 578

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.62  E-value=3.1e-15  Score=104.62  Aligned_cols=87  Identities=10%  Similarity=0.148  Sum_probs=69.5

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhc--CCcEEEEEeeCCCCHHHHHHHHhCC
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKED--GYQFEIIFVSSDRSESSYQSYLSGM  102 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~--g~~~~ii~i~~d~~~~~~~~~~~~~  102 (190)
                      ....+++.+++..+.   .++++++|+||++||++|+.+.|.+.++++.+...  ..++.++.|+++.            
T Consensus        16 ~v~~l~~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~------------   80 (127)
T 3h79_A           16 RVVELTDETFDSIVM---DPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK------------   80 (127)
T ss_dssp             CCEECCTTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT------------
T ss_pred             ceEECChhhHHHHHh---CCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccc------------
Confidence            445566666655553   25889999999999999999999999999987632  2468888888875            


Q ss_pred             CCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         103 PWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                                 +..++++|+|.++|++++  ++++++
T Consensus        81 -----------~~~l~~~~~v~~~Pt~~~--~~~g~~  104 (127)
T 3h79_A           81 -----------YPDVIERMRVSGFPTMRY--YTRIDK  104 (127)
T ss_dssp             -----------CHHHHHHTTCCSSSEEEE--ECSSCS
T ss_pred             -----------cHhHHHhcCCccCCEEEE--EeCCCC
Confidence                       357899999999999999  877663

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.61  E-value=3.4e-15  Score=113.77  Aligned_cols=119  Identities=21%  Similarity=0.245  Sum_probs=97.8

Q ss_pred             CCCcccceecc---CCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          20 GAKKTYNIGLA---EGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        20 ~~~~~~~~~l~---~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      .+.++|+|+++   ++++....++++ +||++||+|| +.|||.|..+++.+++.+.+|.+.  ++++++||.| +....
T Consensus        25 VG~~APdF~l~a~~d~~~~~vsLsd~-~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~--g~~vigiS~D-s~~sh  100 (216)
T 3sbc_A           25 VQKQAPTFKKTAVVDGVFDEVSLDKY-KGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQ--GAQVLFASTD-SEYSL  100 (216)
T ss_dssp             TTSBCCCCCEEEEETTEEEEECGGGG-TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHT--TEEEEEEESS-CHHHH
T ss_pred             cCCcCCCCCCcceECCCCcEEehHHh-CCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccC--CceEEEeecC-chhhH
Confidence            35677888765   666666677776 7899999999 999999999999999999999987  4999999998 66677


Q ss_pred             HHHHhCCC------CCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEEc
Q psy8729          96 QSYLSGMP------WPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        96 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~~  144 (190)
                      +.|.+...      -..+|+..|.+.++++.||+-      ..+.+|+  ||++|+++.+.
T Consensus       101 ~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFi--ID~~G~Ir~~~  159 (216)
T 3sbc_A          101 LAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFI--IDPKGVIRHIT  159 (216)
T ss_dssp             HHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEE--ECTTSBEEEEE
T ss_pred             HHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEE--ECCCCeEEEEE
Confidence            77776442      357888899999999999983      4678999  99999775543

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=2.8e-15  Score=106.27  Aligned_cols=83  Identities=25%  Similarity=0.481  Sum_probs=66.4

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      ..+++.+++..+    .++++++|+||++||++|+.+.|.+.++++++.+.+.++.++.|+++.                
T Consensus        20 ~~l~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----------------   79 (140)
T 2dj1_A           20 WVLNDGNFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS----------------   79 (140)
T ss_dssp             EECCTTTHHHHH----TTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTT----------------
T ss_pred             EEcChHhHHHHH----hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcc----------------
Confidence            345444444322    368999999999999999999999999999998765568888887664                


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                             ...++++|++.++|++++  + ++|+
T Consensus        80 -------~~~~~~~~~v~~~Pt~~~--~-~~G~  102 (140)
T 2dj1_A           80 -------ASMLASKFDVSGYPTIKI--L-KKGQ  102 (140)
T ss_dssp             -------CHHHHHHTTCCSSSEEEE--E-ETTE
T ss_pred             -------cHHHHHHCCCCccCeEEE--E-ECCc
Confidence                   357889999999999999  8 6783

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.61  E-value=1.1e-15  Score=110.38  Aligned_cols=66  Identities=14%  Similarity=0.259  Sum_probs=58.2

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      +.+++||+|||+||++|+.+.|.|.++++++.++   +.++.|++|+                       .++++++|+|
T Consensus        40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~---v~f~kVDVDe-----------------------~~e~a~~y~V   93 (160)
T 2av4_A           40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF---CVIYLVDITE-----------------------VPDFNTMYEL   93 (160)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTT-----------------------CCTTTTTTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC---cEEEEEECCC-----------------------CHHHHHHcCC
Confidence            6789999999999999999999999999999754   7888888886                       3567899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++||+++  + ++|
T Consensus        94 ~siPT~~f--F-k~G  105 (160)
T 2av4_A           94 YDPVSVMF--F-YRN  105 (160)
T ss_dssp             CSSEEEEE--E-ETT
T ss_pred             CCCCEEEE--E-ECC
Confidence            99999988  6 466

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.59  E-value=2.6e-15  Score=102.72  Aligned_cols=79  Identities=27%  Similarity=0.505  Sum_probs=64.4

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      +.+++.++...+     ++++++|+||++||++|+.+.|.++++++++++   ++.++.|++|.+               
T Consensus         4 ~~l~~~~~~~~~-----~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~vd~~~~---------------   60 (112)
T 2voc_A            4 VKATDQSFSAET-----SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD---KLKIVKIDVDEN---------------   60 (112)
T ss_dssp             EECCTTTHHHHH-----SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT---TCEEEEEETTTC---------------
T ss_pred             EEecHHHHHHHh-----CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CcEEEEEECCCC---------------
Confidence            345555544333     688999999999999999999999999999875   388888888752               


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                              ..++++|++.++|++++  + ++|+
T Consensus        61 --------~~l~~~~~v~~~Pt~~~--~-~~G~   82 (112)
T 2voc_A           61 --------QETAGKYGVMSIPTLLV--L-KDGE   82 (112)
T ss_dssp             --------CSHHHHTTCCSBSEEEE--E-ETTE
T ss_pred             --------HHHHHHcCCCcccEEEE--E-eCCE
Confidence                    46788999999999999  8 7893

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.59  E-value=4.1e-15  Score=104.64  Aligned_cols=73  Identities=23%  Similarity=0.561  Sum_probs=61.9

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHH--HHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLI--ETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL  120 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~--~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (190)
                      .++++++|+||++||++|+.+.|.|.  ++.+.+.++   +.++.|+++..                    +....+++.
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~---~~~~~vd~~~~--------------------~~~~~l~~~   83 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH---FEVVKIDVGNF--------------------DRNLELSQA   83 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH---CEEEEEECTTT--------------------TSSHHHHHH
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC---EEEEEEeCCcc--------------------cchHHHHHH
Confidence            36899999999999999999999999  999888653   88888888421                    114688999


Q ss_pred             cCC---CCCCeeeeeeecCCCce
Q psy8729         121 YNV---HGIPSLILLAVEAGGRL  140 (190)
Q Consensus       121 ~~v---~~~P~~~l~~id~~g~~  140 (190)
                      |++   .++|++++  +|++|++
T Consensus        84 ~~v~~~~~~Pt~~~--~d~~G~~  104 (133)
T 3fk8_A           84 YGDPIQDGIPAVVV--VNSDGKV  104 (133)
T ss_dssp             TTCGGGGCSSEEEE--ECTTSCE
T ss_pred             hCCccCCccceEEE--ECCCCCE
Confidence            999   99999999  9999944

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.59  E-value=1.3e-15  Score=117.23  Aligned_cols=83  Identities=24%  Similarity=0.452  Sum_probs=67.8

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      ...+++.+++...    .++++++|+||++||++|+.+.|.+.++++++++.+.++.++.|+++.               
T Consensus        17 v~~l~~~~~~~~~----~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~---------------   77 (241)
T 3idv_A           17 VLVLNDANFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS---------------   77 (241)
T ss_dssp             EEEECTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTT---------------
T ss_pred             cEEecccCHHHHH----hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccC---------------
Confidence            3445555554433    378999999999999999999999999999998765568888888775               


Q ss_pred             cccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                              ...++++|+|.++|++++  ++ +|
T Consensus        78 --------~~~l~~~~~v~~~Pt~~~--~~-~g   99 (241)
T 3idv_A           78 --------ASVLASRFDVSGYPTIKI--LK-KG   99 (241)
T ss_dssp             --------CHHHHHHTTCCSSSEEEE--EE-TT
T ss_pred             --------CHHHHHhcCCCcCCEEEE--Ec-CC
Confidence                    357899999999999999  86 45

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.59  E-value=7e-15  Score=98.95  Aligned_cols=79  Identities=29%  Similarity=0.452  Sum_probs=64.8

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      ...+++.+++..+     ++++++|+||++||++|+.+.|.+.+++++++++   +.++.|++|.               
T Consensus         5 v~~l~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~---------------   61 (106)
T 3die_A            5 IVKVTDADFDSKV-----ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDE---------------   61 (106)
T ss_dssp             CEECCTTTHHHHS-----CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTT---------------
T ss_pred             eEECCHHHHHHHh-----cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEECCc---------------
Confidence            3445555554444     6889999999999999999999999999998754   7888888875               


Q ss_pred             cccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                              +..++++|++.++|++++  ++ +|
T Consensus        62 --------~~~~~~~~~v~~~Pt~~~--~~-~G   83 (106)
T 3die_A           62 --------NPSTAAKYEVMSIPTLIV--FK-DG   83 (106)
T ss_dssp             --------CHHHHHHTTCCSBSEEEE--EE-TT
T ss_pred             --------CHHHHHhCCCcccCEEEE--Ee-CC
Confidence                    357889999999999999  85 78

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.59  E-value=3.3e-15  Score=105.85  Aligned_cols=69  Identities=28%  Similarity=0.548  Sum_probs=60.8

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+.+++++++++   +.++.|+++.                       +..+++.|++
T Consensus        37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~-----------------------~~~l~~~~~v   90 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKVDTEK-----------------------EQELAGAFGI   90 (136)
T ss_dssp             CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT---CEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---EEEEEEeCCC-----------------------CHHHHHHcCC
Confidence            5789999999999999999999999999988653   8888888875                       3578899999


Q ss_pred             CCCCeeeeeeecCCCce
Q psy8729         124 HGIPSLILLAVEAGGRL  140 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~~  140 (190)
                      .++|++++  +|++|++
T Consensus        91 ~~~Pt~~~--~~~~G~~  105 (136)
T 2l5l_A           91 RSIPSILF--IPMEGKP  105 (136)
T ss_dssp             CSSCEEEE--ECSSSCC
T ss_pred             CCCCEEEE--ECCCCcE
Confidence            99999999  9999954

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.58  E-value=4.7e-15  Score=99.83  Aligned_cols=67  Identities=28%  Similarity=0.541  Sum_probs=58.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+++++++++++   +.++.++++.                       +..+++.|++
T Consensus        16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~-----------------------~~~~~~~~~v   69 (105)
T 1nsw_A           16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDE-----------------------NPETTSQFGI   69 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT---CEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECcC-----------------------CHHHHHHcCC
Confidence            6789999999999999999999999999988653   7888888875                       3578899999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++|++++  + ++|+
T Consensus        70 ~~~Pt~~~--~-~~G~   82 (105)
T 1nsw_A           70 MSIPTLIL--F-KGGR   82 (105)
T ss_dssp             CSSSEEEE--E-ETTE
T ss_pred             ccccEEEE--E-eCCe
Confidence            99999999  8 7883

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.57  E-value=2.1e-15  Score=106.60  Aligned_cols=71  Identities=20%  Similarity=0.433  Sum_probs=60.2

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL  120 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (190)
                      ++++++|+||++||++|+.+.|.+   .++++.++    ++.++.|+++...                   +....+++.
T Consensus        30 ~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~----~~~~~~vd~~~~~-------------------~~~~~l~~~   86 (134)
T 2fwh_A           30 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA----DTVLLQANVTAND-------------------AQDVALLKH   86 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT----TSEEEEEECTTCC-------------------HHHHHHHHH
T ss_pred             cCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc----CcEEEEEeCCCCc-------------------chHHHHHHH
Confidence            588999999999999999999998   88888874    3778888886431                   226789999


Q ss_pred             cCCCCCCeeeeeeecCCCc
Q psy8729         121 YNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       121 ~~v~~~P~~~l~~id~~g~  139 (190)
                      |++.++|++++  +|++|+
T Consensus        87 ~~v~~~Pt~~~--~d~~G~  103 (134)
T 2fwh_A           87 LNVLGLPTILF--FDGQGQ  103 (134)
T ss_dssp             TTCCSSSEEEE--ECTTSC
T ss_pred             cCCCCCCEEEE--ECCCCC
Confidence            99999999999  999993

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.57  E-value=3.9e-15  Score=105.52  Aligned_cols=83  Identities=19%  Similarity=0.246  Sum_probs=67.7

Q ss_pred             eccCCCccceeeeeccCCcEEEEEEEcCCC--hhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          28 GLAEGTVTTKVLSYIESCQVIGLYFSAHWC--PPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC--~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      .+++.+++..+.   ..+++++|+|||+||  ++|+.+.|.|.+++++|.++   +.++.|++|.               
T Consensus        19 ~vt~~~F~~~v~---~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~---v~~~KVdvDe---------------   77 (137)
T 2qsi_A           19 LVDEATVDDFIA---HSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---LVAAEVAAEA---------------   77 (137)
T ss_dssp             EECTTTHHHHHH---TSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT---EEEEEECGGG---------------
T ss_pred             ccCHhHHHHHHh---cCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC---cEEEEEECCC---------------
Confidence            456667765553   134599999999999  99999999999999998754   8888888774               


Q ss_pred             cccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEc
Q psy8729         106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~  144 (190)
                              ++.++.+|||.++||+++  + ++|  +.+.
T Consensus        78 --------~~~la~~ygV~siPTlil--F-kdG--~~v~  103 (137)
T 2qsi_A           78 --------ERGLMARFGVAVCPSLAV--V-QPE--RTLG  103 (137)
T ss_dssp             --------HHHHHHHHTCCSSSEEEE--E-ECC--EEEE
T ss_pred             --------CHHHHHHcCCccCCEEEE--E-ECC--EEEE
Confidence                    578999999999999999  7 688  4443

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.57  E-value=5.8e-15  Score=99.72  Aligned_cols=80  Identities=23%  Similarity=0.442  Sum_probs=65.2

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      ..+++.+++..+    .++++++|+||++||++|+.+.|.+.++++.++++   +.++.++++.                
T Consensus         7 ~~l~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~----------------   63 (109)
T 3tco_A            7 LVLTEENFDEVI----RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK---AVFGRLNVDE----------------   63 (109)
T ss_dssp             EECCTTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTT----------------
T ss_pred             EEecHHHHHHHH----hcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC---ceEEEEcccc----------------
Confidence            445555554443    26899999999999999999999999999998754   7788888775                


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                             ...+++.|++.++|++++  + ++|+
T Consensus        64 -------~~~~~~~~~i~~~Pt~~~--~-~~g~   86 (109)
T 3tco_A           64 -------NQKIADKYSVLNIPTTLI--F-VNGQ   86 (109)
T ss_dssp             -------CHHHHHHTTCCSSSEEEE--E-ETTE
T ss_pred             -------CHHHHHhcCcccCCEEEE--E-cCCc
Confidence                   357899999999999999  8 7883

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=3.2e-15  Score=104.64  Aligned_cols=88  Identities=18%  Similarity=0.367  Sum_probs=65.3

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCC
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP  103 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~  103 (190)
                      +.+++.++...+.....++++++|+||++||++|+.+.|.+   ..+.+.+...   +.++.|+++.+.           
T Consensus         9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-----------   74 (130)
T 2kuc_A            9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH---FVNLKMDMEKGE-----------   74 (130)
T ss_dssp             CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH---SEEEEECSSSTT-----------
T ss_pred             CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC---eEEEEEecCCcc-----------
Confidence            44555555444432223688999999999999999999998   6666665543   666677666322           


Q ss_pred             CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                                ...++++|++.++|++++  +|++|++
T Consensus        75 ----------~~~~~~~~~v~~~Pt~~~--~d~~G~~   99 (130)
T 2kuc_A           75 ----------GVELRKKYGVHAYPTLLF--INSSGEV   99 (130)
T ss_dssp             ----------HHHHHHHTTCCSSCEEEE--ECTTSCE
T ss_pred             ----------hHHHHHHcCCCCCCEEEE--ECCCCcE
Confidence                      578899999999999999  9999954

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.57  E-value=4.4e-15  Score=104.34  Aligned_cols=82  Identities=29%  Similarity=0.515  Sum_probs=66.1

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      ...+++.++...+.   .++++++|+||++||++|+.+.|.++++++++++   ++.++.|+++.+              
T Consensus        24 v~~l~~~~f~~~~~---~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~~~~--------------   83 (128)
T 2o8v_B           24 IIHLTDDSFDTDVL---KADGAILVDFWAEWCGPAKMIAPILDEIADEYQG---KLTVAKLNIDQN--------------   83 (128)
T ss_dssp             SEEECTTTHHHHTT---TCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT---TEEEEEEETTTC--------------
T ss_pred             cEecChhhHHHHHH---hcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CeEEEEEECCCC--------------
Confidence            45566666554332   3789999999999999999999999999998865   388999988753              


Q ss_pred             cccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                               ..+++.|++.++|++++  + ++|+
T Consensus        84 ---------~~l~~~~~v~~~Pt~~~--~-~~G~  105 (128)
T 2o8v_B           84 ---------PGTAPKYGIRGIPTLLL--F-KNGE  105 (128)
T ss_dssp             ---------CTTSGGGTCCSSSEEEE--E-ETTE
T ss_pred             ---------HHHHHHcCCCccCEEEE--E-eCCE
Confidence                     35678999999999999  8 7883

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.57  E-value=8.2e-15  Score=99.11  Aligned_cols=81  Identities=31%  Similarity=0.578  Sum_probs=64.7

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      ..+++.++...+.   .++++++|+||++||++|+.+.|.++++++++++   ++.++.|+++.+               
T Consensus         5 ~~l~~~~f~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~~---------------   63 (108)
T 2trx_A            5 IHLTDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQN---------------   63 (108)
T ss_dssp             EECCTTTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTTC---------------
T ss_pred             eecchhhHHHHHH---hcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC---CcEEEEEECCCC---------------
Confidence            3455555543332   3688999999999999999999999999998865   388888888753               


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                              ..++++|++.++|++++  + ++|+
T Consensus        64 --------~~~~~~~~v~~~Pt~~~--~-~~G~   85 (108)
T 2trx_A           64 --------PGTAPKYGIRGIPTLLL--F-KNGE   85 (108)
T ss_dssp             --------TTHHHHTTCCSSSEEEE--E-ETTE
T ss_pred             --------HHHHHHcCCcccCEEEE--E-eCCE
Confidence                    46788999999999999  8 6883

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=1.3e-14  Score=101.55  Aligned_cols=82  Identities=28%  Similarity=0.500  Sum_probs=65.3

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      ..+++.++...+.   .++++++|+||++||++|+.+.|.+.++++++++.   +.++.|+++.                
T Consensus        20 ~~l~~~~f~~~~~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~----------------   77 (130)
T 2dml_A           20 IELTPSNFNREVI---QSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV---VKVGAVNADK----------------   77 (130)
T ss_dssp             EECCTTTHHHHTT---TCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT---SEEEEEETTT----------------
T ss_pred             EECCHHHHHHHHh---cCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc---eEEEEEeCCC----------------
Confidence            3444444443332   36889999999999999999999999999998653   7788888765                


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                             ...++++|++.++|++++  ++++|+
T Consensus        78 -------~~~l~~~~~v~~~Pt~~~--~~~~~~  101 (130)
T 2dml_A           78 -------HQSLGGQYGVQGFPTIKI--FGANKN  101 (130)
T ss_dssp             -------CHHHHHHHTCCSSSEEEE--ESSCTT
T ss_pred             -------CHHHHHHcCCCccCEEEE--EeCCCC
Confidence                   357899999999999999  988884

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.57  E-value=7.8e-15  Score=99.99  Aligned_cols=68  Identities=24%  Similarity=0.489  Sum_probs=58.5

Q ss_pred             eccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH
Q psy8729          41 YIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL  120 (190)
Q Consensus        41 ~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (190)
                      .+.++++++|+||++||++|+.+.|.++++++++++    +.++.|++|.                       ...++++
T Consensus        20 ~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~----~~~~~vd~~~-----------------------~~~l~~~   72 (109)
T 3f3q_A           20 AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ----ADFYKLDVDE-----------------------LGDVAQK   72 (109)
T ss_dssp             HTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTT-----------------------CHHHHHH
T ss_pred             HHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC----CEEEEEECCC-----------------------CHHHHHH
Confidence            334789999999999999999999999999998743    6788888775                       3578999


Q ss_pred             cCCCCCCeeeeeeecCCC
Q psy8729         121 YNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       121 ~~v~~~P~~~l~~id~~g  138 (190)
                      |++.++|++++  ++ +|
T Consensus        73 ~~v~~~Pt~~~--~~-~G   87 (109)
T 3f3q_A           73 NEVSAMPTLLL--FK-NG   87 (109)
T ss_dssp             TTCCSSSEEEE--EE-TT
T ss_pred             cCCCccCEEEE--EE-CC
Confidence            99999999999  87 77

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.56  E-value=7.9e-15  Score=105.80  Aligned_cols=66  Identities=23%  Similarity=0.332  Sum_probs=57.9

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+|||+||++|+.+.|.|.+++++++++   +.++.|++|.                       ...+++.|+|
T Consensus        22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~---~~~~~vd~d~-----------------------~~~l~~~~~v   75 (149)
T 3gix_A           22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM---AAIYLVDVDQ-----------------------TAVYTQYFDI   75 (149)
T ss_dssp             CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT---EEEEEEETTT-----------------------CCHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCc-----------------------CHHHHHHcCC
Confidence            6899999999999999999999999999888653   8888888875                       3578999999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  + ++|
T Consensus        76 ~~~Pt~~~--~-~~G   87 (149)
T 3gix_A           76 SYIPSTVF--F-FNG   87 (149)
T ss_dssp             CSSSEEEE--E-ETT
T ss_pred             CccCeEEE--E-ECC
Confidence            99999998  6 467

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.56  E-value=4.8e-15  Score=117.30  Aligned_cols=83  Identities=18%  Similarity=0.341  Sum_probs=67.6

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      ...+++.+++..+..  +++++++|+||++||++|+.+.|.+.+++++++++   +.++.|+++.               
T Consensus         9 v~~~~~~~f~~~~~~--~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~---------------   68 (287)
T 3qou_A            9 IVNINESNLQQVLEQ--SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAKLDCDA---------------   68 (287)
T ss_dssp             EEECCTTTHHHHHTT--TTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS---SEEEEEETTT---------------
T ss_pred             cEECCHHHHHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEEeCcc---------------
Confidence            445666777663321  25899999999999999999999999999999753   8888888875               


Q ss_pred             cccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                              +..+++.|+|.++||+++  + ++|+
T Consensus        69 --------~~~~~~~~~v~~~Pt~~~--~-~~G~   91 (287)
T 3qou_A           69 --------EQMIAAQFGLRAIPTVYL--F-QNGQ   91 (287)
T ss_dssp             --------CHHHHHTTTCCSSSEEEE--E-ETTE
T ss_pred             --------CHHHHHHcCCCCCCeEEE--E-ECCE
Confidence                    357899999999999999  8 5783

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1.5e-14  Score=101.43  Aligned_cols=84  Identities=29%  Similarity=0.515  Sum_probs=65.8

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhc-CCcEEEEEeeCCCCHHHHHHHHhCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKED-GYQFEIIFVSSDRSESSYQSYLSGMPW  104 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-g~~~~ii~i~~d~~~~~~~~~~~~~~~  104 (190)
                      ...+++.++...+.   .++++++|+||++||++|+.+.|.+.++++++... ..++.++.|+++.              
T Consensus         9 v~~l~~~~~~~~~~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--------------   71 (133)
T 1x5d_A            9 VIELTDDSFDKNVL---DSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV--------------   71 (133)
T ss_dssp             CEECCTTHHHHHTT---TSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT--------------
T ss_pred             CEEcCHhhHHHHHh---cCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC--------------
Confidence            34555555544332   25789999999999999999999999999998731 1248888888774              


Q ss_pred             CcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         105 PAIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                               +..+++.|++.++|++++  +++ |
T Consensus        72 ---------~~~l~~~~~v~~~Pt~~~--~~~-g   93 (133)
T 1x5d_A           72 ---------NQVLASRYGIRGFPTIKI--FQK-G   93 (133)
T ss_dssp             ---------CCHHHHHHTCCSSSEEEE--EET-T
T ss_pred             ---------CHHHHHhCCCCeeCeEEE--EeC-C
Confidence                     357889999999999999  987 6

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.56  E-value=2.9e-14  Score=108.86  Aligned_cols=122  Identities=20%  Similarity=0.266  Sum_probs=99.8

Q ss_pred             CCCCCCccccee----ccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCC
Q psy8729          17 GSKGAKKTYNIG----LAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRS   91 (190)
Q Consensus        17 ~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~   91 (190)
                      ....+.++|+|+    +.++++....++++ .||++||+|| +.|||.|..++..+++.+.+|.+.  ++++++||.| +
T Consensus        25 ~~~vG~~APdF~~~a~l~d~~g~~vsLsd~-~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~--g~~vigiS~D-s  100 (219)
T 3tue_A           25 NAKINSPAPSFEEVALMPNGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNEL--NCEVLACSID-S  100 (219)
T ss_dssp             CCCTTSBCCCCEEEEECTTSCEEEEEGGGG-TTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTT--TEEEEEEESS-C
T ss_pred             ccccCCcCCCCcccccccCCCCcEEehHHh-CCCEEEEEEecccCCCCCchhHhhHHHHHhhhccC--CcEEEEeeCC-c
Confidence            334566788887    66778877777777 7899999999 999999999999999999999987  5999999998 6


Q ss_pred             HHHHHHHHhCC------CCCcccCCchhHHHHHHHcCCC----C--CCeeeeeeecCCCceEEEc
Q psy8729          92 ESSYQSYLSGM------PWPAIPYASETRQSLASLYNVH----G--IPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        92 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~----~--~P~~~l~~id~~g~~~i~~  144 (190)
                      .+..+.|..+.      .-..+|+..|.+..++++||+-    +  .-.+|+  ||++|+++.+.
T Consensus       101 ~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFi--IDp~g~Ir~~~  163 (219)
T 3tue_A          101 EYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFI--IDPHGMLRQIT  163 (219)
T ss_dssp             HHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEE--ECTTSBEEEEE
T ss_pred             hhhHHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEE--ECCCCeEEEEE
Confidence            66777887654      2356888899999999999983    2  347888  99999776554

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.56  E-value=7.7e-15  Score=99.17  Aligned_cols=66  Identities=21%  Similarity=0.321  Sum_probs=50.3

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.+++++++++    ++.++.|++|.+                       ..++++|+
T Consensus        16 ~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~~~~-----------------------~~l~~~~~   68 (105)
T 4euy_A           16 EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN----YVEKIEILLQDM-----------------------QEIAGRYA   68 (105)
T ss_dssp             TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT----TEEEEEEEECCC-------------------------------
T ss_pred             hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC----CceEEEEECCCC-----------------------HHHHHhcC
Confidence            478999999999999999999999999998873    488888888753                       46788999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      +.++|++++  ++ +|
T Consensus        69 v~~~Pt~~~--~~-~G   81 (105)
T 4euy_A           69 VFTGPTVLL--FY-NG   81 (105)
T ss_dssp             -CCCCEEEE--EE-TT
T ss_pred             CCCCCEEEE--Ee-CC
Confidence            999999999  84 78

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.56  E-value=1.4e-14  Score=98.74  Aligned_cols=83  Identities=14%  Similarity=0.267  Sum_probs=63.6

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      ..+++.++...+.+.  ++++++|+||++||++|+.+.|.+++++++++    ++.++.|+++..               
T Consensus         8 ~~l~~~~~~~~~~~~--~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~---------------   66 (111)
T 2pu9_C            8 TEVNKDTFWPIVKAA--GDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL----DVIFLKLDCNQE---------------   66 (111)
T ss_dssp             EEECTTTHHHHHTTC--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSST---------------
T ss_pred             EEechHHHHHHHHhc--CCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC----CeEEEEEecCcc---------------
Confidence            445555555444322  58899999999999999999999999998875    367888877621               


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                             ...++++|++.++|++++   +++|++
T Consensus        67 -------~~~~~~~~~v~~~Pt~~~---~~~G~~   90 (111)
T 2pu9_C           67 -------NKTLAKELGIRVVPTFKI---LKENSV   90 (111)
T ss_dssp             -------THHHHHHHCCSBSSEEEE---ESSSSE
T ss_pred             -------hHHHHHHcCCCeeeEEEE---EeCCcE
Confidence                   367899999999999555   588843

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.56  E-value=6.4e-15  Score=102.86  Aligned_cols=86  Identities=23%  Similarity=0.449  Sum_probs=65.6

Q ss_pred             cccceeccC-CCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhC
Q psy8729          23 KTYNIGLAE-GTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSG  101 (190)
Q Consensus        23 ~~~~~~l~~-~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~  101 (190)
                      ....+.+.+ .+++..+.....++++++|+||++||++|+.+.|.|++++++++    ++.++.|++|.           
T Consensus        15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~v~~~~vd~d~-----------   79 (124)
T 1xfl_A           15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP----NVLFLKVDTDE-----------   79 (124)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS----SEEEEEEETTT-----------
T ss_pred             CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CcEEEEEECcc-----------
Confidence            334455543 33444443322368999999999999999999999999998874    38888888874           


Q ss_pred             CCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         102 MPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                                  ...++++|++.++|++++  + ++|
T Consensus        80 ------------~~~l~~~~~v~~~Pt~~~--~-~~G  101 (124)
T 1xfl_A           80 ------------LKSVASDWAIQAMPTFMF--L-KEG  101 (124)
T ss_dssp             ------------SHHHHHHTTCCSSSEEEE--E-ETT
T ss_pred             ------------CHHHHHHcCCCccCEEEE--E-ECC
Confidence                        357889999999999888  6 688

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.55  E-value=1.1e-14  Score=99.14  Aligned_cols=81  Identities=26%  Similarity=0.511  Sum_probs=64.3

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      ..+++.++.....   .++++++|+||++||++|+.+.|.+.++++++.+   ++.++.|+++.                
T Consensus         8 ~~l~~~~~~~~~~---~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~----------------   65 (112)
T 1t00_A            8 KHVTDDSFEQDVL---KNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD---KIEIVKLNIDE----------------   65 (112)
T ss_dssp             EEECTTTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTT----------------
T ss_pred             EecchhhHHHHHh---hCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC---CeEEEEEEcCC----------------
Confidence            3455555443332   3688999999999999999999999999998864   38888888875                


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                             +..+++.|++.++|++++  + ++|+
T Consensus        66 -------~~~~~~~~~v~~~Pt~~~--~-~~G~   88 (112)
T 1t00_A           66 -------NPGTAAKYGVMSIPTLNV--Y-QGGE   88 (112)
T ss_dssp             -------CHHHHHHTTCCSSSEEEE--E-ETTE
T ss_pred             -------CHHHHHhCCCCcccEEEE--E-eCCE
Confidence                   357889999999999888  7 6883

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.55  E-value=4.9e-15  Score=109.03  Aligned_cols=68  Identities=19%  Similarity=0.250  Sum_probs=56.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC-
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN-  122 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  122 (190)
                      ++++++|+|||+||++|+.+.|.|+++++.++    ++.++.|+.|.                       +..+...|+ 
T Consensus        53 ~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~----~v~~~~v~~d~-----------------------~~~~~~~~~~  105 (167)
T 1z6n_A           53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP----NIELAIISKGR-----------------------AEDDLRQRLA  105 (167)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT----TEEEEEECHHH-----------------------HHHHTTTTTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHCC----CcEEEEEECCC-----------------------CHHHHHHHHH
Confidence            67899999999999999999999999988763    47888887763                       334555565 


Q ss_pred             --CCCCCeeeeeeecCCCce
Q psy8729         123 --VHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       123 --v~~~P~~~l~~id~~g~~  140 (190)
                        +.++||+++  ++++|++
T Consensus       106 ~~v~~iPt~i~--~~~~G~~  123 (167)
T 1z6n_A          106 LERIAIPLVLV--LDEEFNL  123 (167)
T ss_dssp             CSSCCSSEEEE--ECTTCCE
T ss_pred             cCCCCcCeEEE--ECCCCCE
Confidence              999999999  9998843

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.55  E-value=2.4e-14  Score=96.40  Aligned_cols=81  Identities=27%  Similarity=0.569  Sum_probs=65.2

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      ..+++.++.....   .++++++|+||++||++|+.+.|.+.++++++++   ++.++.|+++.+               
T Consensus         5 ~~l~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~---------------   63 (107)
T 2i4a_A            5 LAVSDSSFDQDVL---KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG---KVTVAKVNIDDN---------------   63 (107)
T ss_dssp             EECCTTTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT---SEEEEEEETTTC---------------
T ss_pred             eecchhhhhHHHH---hCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC---cEEEEEEECCCC---------------
Confidence            3445555543332   3788999999999999999999999999999875   388988888752               


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                              ..++++|++.++|++++  + ++|+
T Consensus        64 --------~~~~~~~~v~~~Pt~~~--~-~~G~   85 (107)
T 2i4a_A           64 --------PETPNAYQVRSIPTLML--V-RDGK   85 (107)
T ss_dssp             --------CHHHHHTTCCSSSEEEE--E-ETTE
T ss_pred             --------HHHHHhcCCCccCEEEE--E-eCCE
Confidence                    46789999999999999  8 7883

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.55  E-value=1.6e-14  Score=116.75  Aligned_cols=113  Identities=12%  Similarity=0.066  Sum_probs=94.2

Q ss_pred             CcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729          22 KKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS  100 (190)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~  100 (190)
                      ...|+|+|++.+|+...++++ .||++||+|| +.|||.|..+++.+++    ...  .++++++||.| +.+..++|.+
T Consensus         2 ak~p~F~l~~~~G~~~~Lsd~-~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~--~~~~v~gis~D-~~~~~~~f~~   73 (322)
T 4eo3_A            2 ARVKHFELLTDEGKTFTHVDL-YGKYTILFFFPKAGTSGSTREAVEFSR----ENF--EKAQVVGISRD-SVEALKRFKE   73 (322)
T ss_dssp             CBCCCCEEEETTSCEEEGGGT-TTSEEEEEECSSTTSHHHHHHHHHHHH----SCC--TTEEEEEEESC-CHHHHHHHHH
T ss_pred             CCCCCcEEECCCcCEEeHHHh-CCCeEEEEEECCCCCCCCHHHHHHHHH----Hhh--CCCEEEEEeCC-CHHHHHHHHH
Confidence            467899999999988888887 7899999999 6899999999887753    122  35999999987 6778899999


Q ss_pred             CCCCCcccCCchhHHHHHHHcCCC----CCCeeeeeeecCCCceEEEcc
Q psy8729         101 GMPWPAIPYASETRQSLASLYNVH----GIPSLILLAVEAGGRLDVITT  145 (190)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~v~----~~P~~~l~~id~~g~~~i~~~  145 (190)
                      +++. .+|++.|.+..+.+.||+.    .+|++|+  ||++|+++.+..
T Consensus        74 ~~~l-~fp~l~D~~~~v~~~ygv~~~~~~~r~tfi--Id~~G~i~~~~~  119 (322)
T 4eo3_A           74 KNDL-KVTLLSDPEGILHEFFNVLENGKTVRSTFL--IDRWGFVRKEWR  119 (322)
T ss_dssp             HHTC-CSEEEECTTCHHHHHTTCEETTEECCEEEE--ECTTSBEEEEEE
T ss_pred             hhCC-ceEEEEcCchHHHHhcCCCCCCcCccEEEE--ECCCCEEEEEEe
Confidence            8885 6888999999999999993    5889999  999997765543

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.54  E-value=1.2e-14  Score=105.10  Aligned_cols=109  Identities=13%  Similarity=0.219  Sum_probs=67.1

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+.+++++++    ++.++.|+++.                       +..+++.|++
T Consensus        31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~~~-----------------------~~~l~~~~~v   83 (153)
T 2wz9_A           31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP----QVSFVKLEAEG-----------------------VPEVSEKYEI   83 (153)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTT-----------------------SHHHHHHTTC
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC----CeEEEEEECCC-----------------------CHHHHHHcCC
Confidence            38899999999999999999999999998873    47888888875                       3578899999


Q ss_pred             CCCCeeeeeeecCCCceEEEccccccc----cccCCCCCcCCCCcccccccCCCCCCCCCCCC
Q psy8729         124 HGIPSLILLAVEAGGRLDVITTEARHE----LSEDPDGEFFPWPPKLVNVLSPRHCPKLYDSP  182 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (190)
                      .++|++++  ++ +|+......+...+    .++.......+-.+.....|++..++.+...+
T Consensus        84 ~~~Pt~~~--~~-~G~~~~~~~G~~~~~l~~~i~~~l~~~~~~~~~~~~~l~~~~f~~~~~~~  143 (153)
T 2wz9_A           84 SSVPTFLF--FK-NSQKIDRLDGAHAPELTKKVQRHASSGSFLPSAKVKVDTDPNSSSVDKLA  143 (153)
T ss_dssp             CSSSEEEE--EE-TTEEEEEEESSCHHHHHHHHHHHSCTTSSCSCCCCCCC------------
T ss_pred             CCCCEEEE--EE-CCEEEEEEeCCCHHHHHHHHHHHhccccCCCccccccCCCCChhhHHHHH
Confidence            99999999  88 88432112121111    12222222223333445556666666554433

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.54  E-value=1.1e-14  Score=102.34  Aligned_cols=86  Identities=20%  Similarity=0.355  Sum_probs=65.7

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCC
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPW  104 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~  104 (190)
                      ....+++.++...+.   .++++++|+||++||++|+.+.|.|.++++++... .++.++.|+++..             
T Consensus         8 ~v~~l~~~~~~~~~~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~~~vd~~~~-------------   70 (133)
T 2dj3_A            8 PVKVVVGKTFDAIVM---DPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQ-KDLVIAKMDATAN-------------   70 (133)
T ss_dssp             SSEECCTTTCCCCCT---CTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTS-SSEEEEEECTTTS-------------
T ss_pred             ceEEEcCCCHHHHhc---cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC-CCEEEEEecCCcC-------------
Confidence            344455555554443   25889999999999999999999999999999754 2578887776642             


Q ss_pred             CcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         105 PAIPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                                ..+++.|++.++|++++  ++++++
T Consensus        71 ----------~~~~~~~~v~~~Pt~~~--~~~g~~   93 (133)
T 2dj3_A           71 ----------DITNDQYKVEGFPTIYF--APSGDK   93 (133)
T ss_dssp             ----------CCCCSSCCCSSSSEEEE--ECTTCT
T ss_pred             ----------HHHHhhcCCCcCCEEEE--EeCCCc
Confidence                      23456899999999999  987764

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=3.8e-14  Score=98.74  Aligned_cols=80  Identities=15%  Similarity=0.311  Sum_probs=63.4

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      ...+++.+++..+     +++ ++|+||++||++|+.+.|.+.++++++.+.  ++.++.|+++.               
T Consensus         9 v~~l~~~~f~~~~-----~~~-vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~--~v~~~~vd~~~---------------   65 (126)
T 1x5e_A            9 VRVITDENWRELL-----EGD-WMIEFYAPWCPACQNLQPEWESFAEWGEDL--EVNIAKVDVTE---------------   65 (126)
T ss_dssp             EEECCTTTHHHHT-----SSE-EEEEEECSSCHHHHHHHHHHHHHHHHHGGG--TCEEEEEETTT---------------
T ss_pred             cEEecHHHHHHHh-----CCC-EEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECcC---------------
Confidence            4455555554322     343 899999999999999999999999998753  48888888775               


Q ss_pred             cccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                              +..+++.|++.++|++++  + ++|+
T Consensus        66 --------~~~~~~~~~v~~~Pt~~~--~-~~G~   88 (126)
T 1x5e_A           66 --------QPGLSGRFIINALPTIYH--C-KDGE   88 (126)
T ss_dssp             --------CHHHHHHTTCCSSSEEEE--E-ETTE
T ss_pred             --------CHHHHHHcCCcccCEEEE--E-eCCe
Confidence                    346889999999999999  8 7883

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.54  E-value=1.5e-14  Score=99.70  Aligned_cols=67  Identities=25%  Similarity=0.422  Sum_probs=57.9

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+.++++++++    +.++.|++|.                       ...++++|++
T Consensus        30 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~-----------------------~~~l~~~~~v   82 (116)
T 3qfa_C           30 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDD-----------------------CQDVASECEV   82 (116)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT----SEEEEEETTT-----------------------THHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCC-----------------------CHHHHHHcCC
Confidence            789999999999999999999999999888743    7788888775                       3578999999


Q ss_pred             CCCCeeeeeeecCCCce
Q psy8729         124 HGIPSLILLAVEAGGRL  140 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~~  140 (190)
                      .++|++++  + ++|+.
T Consensus        83 ~~~Pt~~~--~-~~G~~   96 (116)
T 3qfa_C           83 KSMPTFQF--F-KKGQK   96 (116)
T ss_dssp             CSSSEEEE--E-SSSSE
T ss_pred             ccccEEEE--E-eCCeE
Confidence            99999999  8 67743

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.54  E-value=3.7e-14  Score=109.97  Aligned_cols=87  Identities=22%  Similarity=0.297  Sum_probs=70.4

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCC
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPW  104 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~  104 (190)
                      +...+++.++...+.   ..+++++|+||++||++|+.+.|.+.++++++++.+..+.++.|+++.+.            
T Consensus        13 ~v~~l~~~~f~~~i~---~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~------------   77 (244)
T 3q6o_A           13 PLTLLQADTVRGAVL---GSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET------------   77 (244)
T ss_dssp             SSEEECTTTHHHHHS---SCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTT------------
T ss_pred             CceeCChhhHHHHHh---hCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchh------------
Confidence            345566666655443   25689999999999999999999999999999874446999999986433            


Q ss_pred             CcccCCchhHHHHHHHcCCCCCCeeeeeeecCC
Q psy8729         105 PAIPYASETRQSLASLYNVHGIPSLILLAVEAG  137 (190)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~  137 (190)
                               +..+++.|+|.++|++++  ++++
T Consensus        78 ---------~~~l~~~~~v~~~Pt~~~--~~~g   99 (244)
T 3q6o_A           78 ---------NSAVCRDFNIPGFPTVRF--FXAF   99 (244)
T ss_dssp             ---------THHHHHHTTCCSSSEEEE--ECTT
T ss_pred             ---------hHHHHHHcCCCccCEEEE--EeCC
Confidence                     578999999999999999  8763

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.7e-14  Score=102.24  Aligned_cols=86  Identities=22%  Similarity=0.354  Sum_probs=66.0

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCC
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPW  104 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~  104 (190)
                      ....+++.++...+...  ++++++|+||++||++|+.+.|.++++++++.+.  ++.++.|+++.              
T Consensus         8 ~v~~l~~~~f~~~~~~~--~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~--------------   69 (137)
T 2dj0_A            8 YIKYFNDKTIDEELERD--KRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCT--GLNFGKVDVGR--------------   69 (137)
T ss_dssp             CCEECCTTHHHHHHHHS--TTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSS--SCEEEECCTTT--------------
T ss_pred             eEEEccHhhHHHHHhcC--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--CeEEEEEeCcc--------------
Confidence            34455666665555322  5668999999999999999999999999998742  47888887764              


Q ss_pred             CcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCce
Q psy8729         105 PAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRL  140 (190)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~  140 (190)
                               ...++++|++.      ++|++++  + ++|+.
T Consensus        70 ---------~~~~~~~~~v~~~~~~~~~Pt~~~--~-~~G~~   99 (137)
T 2dj0_A           70 ---------YTDVSTRYKVSTSPLTKQLPTLIL--F-QGGKE   99 (137)
T ss_dssp             ---------CHHHHHHTTCCCCSSSSCSSEEEE--E-SSSSE
T ss_pred             ---------CHHHHHHccCcccCCcCCCCEEEE--E-ECCEE
Confidence                     34678889998      9999999  8 67743

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.53  E-value=2.1e-14  Score=97.41  Aligned_cols=82  Identities=27%  Similarity=0.454  Sum_probs=64.8

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      ...+++.+++..+.     +++++|+||++||++|+.+.|.+.++++++.....++.++.++++.               
T Consensus         7 v~~l~~~~~~~~~~-----~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---------------   66 (111)
T 3uvt_A            7 VLALTENNFDDTIA-----EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA---------------   66 (111)
T ss_dssp             SEECCTTTHHHHHH-----SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT---------------
T ss_pred             ceEcChhhHHHHhc-----CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc---------------
Confidence            34566666554442     6789999999999999999999999988876443468888888875               


Q ss_pred             cccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                              ...++++|++.++|++++  + ++|
T Consensus        67 --------~~~l~~~~~v~~~Pt~~~--~-~~g   88 (111)
T 3uvt_A           67 --------ERNICSKYSVRGYPTLLL--F-RGG   88 (111)
T ss_dssp             --------CHHHHHHTTCCSSSEEEE--E-ETT
T ss_pred             --------cHhHHHhcCCCcccEEEE--E-eCC
Confidence                    357899999999999999  7 567

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.53  E-value=4.5e-14  Score=95.25  Aligned_cols=68  Identities=26%  Similarity=0.595  Sum_probs=58.5

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+++++++++++   +.++.|+.+.                       +..+++.|++
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~-----------------------~~~~~~~~~v   71 (107)
T 1dby_A           18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDE-----------------------SPNVASEYGI   71 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTT-----------------------CHHHHHHHTC
T ss_pred             CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc---eEEEEEECCC-----------------------CHHHHHHCCC
Confidence            6889999999999999999999999999988653   7888888775                       3578899999


Q ss_pred             CCCCeeeeeeecCCCce
Q psy8729         124 HGIPSLILLAVEAGGRL  140 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~~  140 (190)
                      .++|++++  + ++|+.
T Consensus        72 ~~~Pt~~~--~-~~G~~   85 (107)
T 1dby_A           72 RSIPTIMV--F-KGGKK   85 (107)
T ss_dssp             CSSCEEEE--E-SSSSE
T ss_pred             CcCCEEEE--E-eCCEE
Confidence            99999888  7 67843

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.53  E-value=3.8e-14  Score=101.59  Aligned_cols=67  Identities=24%  Similarity=0.573  Sum_probs=58.8

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.++++++++.++   +.++.|+.+.                       ...+++.|+
T Consensus        53 ~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~-----------------------~~~l~~~~~  106 (148)
T 3p2a_A           53 QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK---VRFVKVNTEA-----------------------EPALSTRFR  106 (148)
T ss_dssp             TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTT-----------------------CHHHHHHTT
T ss_pred             hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc---eEEEEEECcC-----------------------CHHHHHHCC
Confidence            47899999999999999999999999999998653   8888888775                       357899999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      +.++|++++  + ++|
T Consensus       107 v~~~Pt~~~--~-~~G  119 (148)
T 3p2a_A          107 IRSIPTIML--Y-RNG  119 (148)
T ss_dssp             CCSSSEEEE--E-ETT
T ss_pred             CCccCEEEE--E-ECC
Confidence            999999999  7 578

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.53  E-value=3.1e-14  Score=98.44  Aligned_cols=67  Identities=28%  Similarity=0.534  Sum_probs=58.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.|+++++++.+   ++.++.|+++.                       +..++++|++
T Consensus        30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~---~v~~~~vd~d~-----------------------~~~l~~~~~v   83 (119)
T 1w4v_A           30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG---KVVMAKVDIDD-----------------------HTDLAIEYEV   83 (119)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---SSEEEEEETTT-----------------------THHHHHHTTC
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCCC-----------------------CHHHHHHcCC
Confidence            678999999999999999999999999998864   38888888875                       3578899999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++|++++  + ++|+
T Consensus        84 ~~~Pt~~~--~-~~G~   96 (119)
T 1w4v_A           84 SAVPTVLA--M-KNGD   96 (119)
T ss_dssp             CSSSEEEE--E-ETTE
T ss_pred             CcccEEEE--E-eCCc
Confidence            99999999  8 7883

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.52  E-value=3.2e-14  Score=102.98  Aligned_cols=80  Identities=24%  Similarity=0.477  Sum_probs=61.5

Q ss_pred             CCcEEEEEEE-cCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH
Q psy8729          44 SCQVIGLYFS-AHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS  119 (190)
Q Consensus        44 ~~k~vlv~F~-a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (190)
                      ++++++|+|| ++||++|+.+.|.+   .++.+.+..   ++.++.|+.+....          + .++ ..+.+..+++
T Consensus        46 ~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~---~~~~v~vd~~~~~~----------~-~~~-~~~~~~~l~~  110 (154)
T 2ju5_A           46 DHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV---HLHMVEVDFPQKNH----------Q-PEE-QRQKNQELKA  110 (154)
T ss_dssp             HCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH---HCEEEEEECCSSCC----------C-CHH-HHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC---cEEEEEecCccccC----------C-Chh-hHhhHHHHHH
Confidence            6899999999 99999999999999   777655543   47788888765320          0 111 1244678999


Q ss_pred             HcCCCCCCeeeeeeecCCCce
Q psy8729         120 LYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       120 ~~~v~~~P~~~l~~id~~g~~  140 (190)
                      .|++.++|++++  +|++|++
T Consensus       111 ~~~v~~~Pt~~~--~d~~G~~  129 (154)
T 2ju5_A          111 QYKVTGFPELVF--IDAEGKQ  129 (154)
T ss_dssp             HTTCCSSSEEEE--ECTTCCE
T ss_pred             HcCCCCCCEEEE--EcCCCCE
Confidence            999999999999  9999944

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.52  E-value=3.1e-14  Score=96.60  Aligned_cols=66  Identities=23%  Similarity=0.484  Sum_probs=58.2

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+.+++++++++   +.++.|+++.                       ...++++|++
T Consensus        21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---v~~~~vd~~~-----------------------~~~l~~~~~v   74 (111)
T 3gnj_A           21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES---FGFYYVDVEE-----------------------EKTLFQRFSL   74 (111)
T ss_dssp             SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCc-----------------------ChhHHHhcCC
Confidence            6789999999999999999999999999998653   7888888875                       3578999999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  + ++|
T Consensus        75 ~~~Pt~~~--~-~~g   86 (111)
T 3gnj_A           75 KGVPQILY--F-KDG   86 (111)
T ss_dssp             CSSCEEEE--E-ETT
T ss_pred             CcCCEEEE--E-ECC
Confidence            99999999  8 577

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.52  E-value=1.2e-14  Score=111.34  Aligned_cols=92  Identities=27%  Similarity=0.477  Sum_probs=69.7

Q ss_pred             CCCCCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          16 GGSKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        16 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      ..+.+........+++.++...+.   .++++++|+||++||++|+.+.|.+.+++++++++   +.++.|+++.+    
T Consensus         4 ~~~~~~~~~~~~~lt~~~f~~~v~---~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~----   73 (222)
T 3dxb_A            4 HHHHHPMSDKIIHLTDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN----   73 (222)
T ss_dssp             -----CCSCCCEECCTTTHHHHHT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC----
T ss_pred             cccCCCCCCCceeCCHHHHHHHHH---hcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCCC----
Confidence            333444445556677777765443   36889999999999999999999999999998754   78888888753    


Q ss_pred             HHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729          96 QSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                                         ..++++|+|.++|++++  ++ +|+
T Consensus        74 -------------------~~l~~~~~v~~~Pt~~~--~~-~G~   95 (222)
T 3dxb_A           74 -------------------PGTAPKYGIRGIPTLLL--FK-NGE   95 (222)
T ss_dssp             -------------------TTTGGGGTCCSBSEEEE--EE-TTE
T ss_pred             -------------------HHHHHHcCCCcCCEEEE--EE-CCe
Confidence                               35678999999999999  75 773

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.52  E-value=2e-14  Score=102.88  Aligned_cols=66  Identities=17%  Similarity=0.299  Sum_probs=57.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+.++++++.+   ++.++.|++|.+                       ..++++|++
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~-----------------------~~~~~~~~i   75 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN---FAVIYLVDITEV-----------------------PDFNKMYEL   75 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT---TEEEEEEETTTC-----------------------CTTTTSSCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEccccC-----------------------HHHHHHcCC
Confidence            589999999999999999999999999999864   388999988753                       356789999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  ++ +|
T Consensus        76 ~~~Pt~~~--~~-~G   87 (142)
T 1qgv_A           76 YDPCTVMF--FF-RN   87 (142)
T ss_dssp             CSSCEEEE--EE-TT
T ss_pred             CCCCEEEE--EE-CC
Confidence            99999999  84 66

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.52  E-value=2.7e-14  Score=98.80  Aligned_cols=69  Identities=20%  Similarity=0.314  Sum_probs=60.0

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.+.++++++++   ++.++.|+++..                       ..+++.|+
T Consensus        19 ~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~-----------------------~~~~~~~~   72 (122)
T 3aps_A           19 QGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG---KVRAGKVDCQAY-----------------------PQTCQKAG   72 (122)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT---TCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCcCC-----------------------HHHHHHcC
Confidence            3688999999999999999999999999999875   388888888753                       46889999


Q ss_pred             CCCCCeeeeeeecCCCc
Q psy8729         123 VHGIPSLILLAVEAGGR  139 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~  139 (190)
                      +.++|++++  ++++|.
T Consensus        73 v~~~Pt~~~--~~~~~~   87 (122)
T 3aps_A           73 IKAYPSVKL--YQYERA   87 (122)
T ss_dssp             CCSSSEEEE--EEEEGG
T ss_pred             CCccceEEE--EeCCCc
Confidence            999999999  887773

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.52  E-value=3.3e-14  Score=95.88  Aligned_cols=79  Identities=23%  Similarity=0.489  Sum_probs=63.7

Q ss_pred             eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcc
Q psy8729          28 GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI  107 (190)
Q Consensus        28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~  107 (190)
                      .+++.++....    .++++++|+||++||++|+.+.|.+.++++++++   ++.++.++++.                 
T Consensus         5 ~l~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~-----------------   60 (109)
T 2yzu_A            5 EVTDQNFDETL----GQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG---KLLVAKLDVDE-----------------   60 (109)
T ss_dssp             ECCTTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT---TBEEEEEETTT-----------------
T ss_pred             EccHhHHHHHh----cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC---ceEEEEEECCC-----------------
Confidence            34555554222    3688999999999999999999999999998864   38888888875                 


Q ss_pred             cCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         108 PYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                            +..+++.|++.++|++++  + ++|+
T Consensus        61 ------~~~~~~~~~v~~~Pt~~~--~-~~g~   83 (109)
T 2yzu_A           61 ------NPKTAMRYRVMSIPTVIL--F-KDGQ   83 (109)
T ss_dssp             ------CHHHHHHTTCCSSSEEEE--E-ETTE
T ss_pred             ------CHhHHHhCCCCcCCEEEE--E-eCCc
Confidence                  347889999999999999  8 7883

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.52  E-value=2.7e-14  Score=97.30  Aligned_cols=67  Identities=21%  Similarity=0.560  Sum_probs=55.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+.++++++...  ++.++.++++.                       ...+++.|++
T Consensus        20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~--~~~~~~vd~~~-----------------------~~~~~~~~~v   74 (112)
T 3d6i_A           20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNS--NVSFLSIDADE-----------------------NSEISELFEI   74 (112)
T ss_dssp             TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGT--TSEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCC--CEEEEEEeccc-----------------------CHHHHHHcCC
Confidence            4889999999999999999999999999886433  48888888875                       3578899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  + ++|
T Consensus        75 ~~~Pt~~~--~-~~G   86 (112)
T 3d6i_A           75 SAVPYFII--I-HKG   86 (112)
T ss_dssp             CSSSEEEE--E-ETT
T ss_pred             CcccEEEE--E-ECC
Confidence            99999999  7 588

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.52  E-value=4.1e-14  Score=97.56  Aligned_cols=81  Identities=30%  Similarity=0.508  Sum_probs=64.6

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      ...+++.++.....   .++++++|+||++||++|+.+.|.+.++++++++   ++.++.|+++.               
T Consensus        14 v~~l~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~---------------   72 (121)
T 2i1u_A           14 TIKVTDASFATDVL---SSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT---DLTVAKLDVDT---------------   72 (121)
T ss_dssp             SEECCTTTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTT---------------
T ss_pred             ceecCHHHHHHHHH---hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEECCC---------------
Confidence            34555555543333   3678999999999999999999999999998864   38888888875               


Q ss_pred             cccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                              ...++++|++.++|++++  + ++|
T Consensus        73 --------~~~~~~~~~i~~~Pt~~~--~-~~g   94 (121)
T 2i1u_A           73 --------NPETARNFQVVSIPTLIL--F-KDG   94 (121)
T ss_dssp             --------CHHHHHHTTCCSSSEEEE--E-ETT
T ss_pred             --------CHHHHHhcCCCcCCEEEE--E-ECC
Confidence                    357889999999999998  7 478

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.52  E-value=4.2e-14  Score=96.45  Aligned_cols=81  Identities=25%  Similarity=0.575  Sum_probs=64.9

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      ..+++.++...+   ..++++++|+||++||++|+.+.|.+.++++.++++   +.++.|+++.+               
T Consensus        10 ~~l~~~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~---------------   68 (115)
T 1thx_A           10 ITITDAEFESEV---LKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPN---------------   68 (115)
T ss_dssp             EECCGGGHHHHT---TTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTC---------------
T ss_pred             EEeeccchhhHh---hcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc---EEEEEEEcCCC---------------
Confidence            444444443333   236889999999999999999999999999988653   88888888753               


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                              ..+++.|++.++|++++  + ++|+
T Consensus        69 --------~~~~~~~~v~~~Pt~~~--~-~~G~   90 (115)
T 1thx_A           69 --------PTTVKKYKVEGVPALRL--V-KGEQ   90 (115)
T ss_dssp             --------HHHHHHTTCCSSSEEEE--E-ETTE
T ss_pred             --------HHHHHHcCCCceeEEEE--E-cCCE
Confidence                    47889999999999999  8 7883

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.51  E-value=3.9e-14  Score=95.81  Aligned_cols=65  Identities=18%  Similarity=0.310  Sum_probs=56.9

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+.+++++++    ++.++.++++.                       +..+++.|++
T Consensus        20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~vd~~~-----------------------~~~~~~~~~v   72 (107)
T 1gh2_A           20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP----QAVFLEVDVHQ-----------------------CQGTAATNNI   72 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT----TSEEEEEETTT-----------------------SHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC----CcEEEEEECcc-----------------------CHHHHHhcCC
Confidence            68899999999999999999999999999873    37888888875                       3568899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  + ++|
T Consensus        73 ~~~Pt~~~--~-~~G   84 (107)
T 1gh2_A           73 SATPTFQF--F-RNK   84 (107)
T ss_dssp             CSSSEEEE--E-ETT
T ss_pred             CcccEEEE--E-ECC
Confidence            99999999  7 678

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.51  E-value=7.9e-15  Score=107.75  Aligned_cols=93  Identities=11%  Similarity=0.210  Sum_probs=58.6

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHH--HHhCCCCCcccCCchhHHHH
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQS--YLSGMPWPAIPYASETRQSL  117 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  117 (190)
                      .++++++|+|||+||++|+.+.+.+   .++.+.+.+   ++.++.|++|...+....  +........+....+....+
T Consensus        45 ~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~---~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (172)
T 3f9u_A           45 QHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN---DYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYL  121 (172)
T ss_dssp             HTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH---HCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             HcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC---CEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHH
Confidence            4799999999999999999975444   555555544   388999998754311000  00000001111112222333


Q ss_pred             -HHHcCCCCCCeeeeeeecCCCce
Q psy8729         118 -ASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       118 -~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                       .+.|++.++|++++  +|++|++
T Consensus       122 ~~~~~~v~~~Pt~~l--id~~G~~  143 (172)
T 3f9u_A          122 QRVKFGANAQPFYVL--IDNEGNP  143 (172)
T ss_dssp             HHHHHSCCCSSEEEE--ECTTSCB
T ss_pred             HHHHcCCCCcceEEE--ECCCCCE
Confidence             58899999999999  9999943

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.51  E-value=4.6e-14  Score=102.37  Aligned_cols=68  Identities=25%  Similarity=0.522  Sum_probs=59.6

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.++++++++.++   +.++.|+++.                       +..++++|+
T Consensus        62 ~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~-----------------------~~~l~~~~~  115 (155)
T 2ppt_A           62 RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKIDTQA-----------------------HPAVAGRHR  115 (155)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTT-----------------------STHHHHHTT
T ss_pred             hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC---EEEEEEeCCc-----------------------cHHHHHHcC
Confidence            47889999999999999999999999999998753   8888888875                       347899999


Q ss_pred             CCCCCeeeeeeecCCCc
Q psy8729         123 VHGIPSLILLAVEAGGR  139 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~  139 (190)
                      +.++|++++  + ++|+
T Consensus       116 i~~~Pt~~~--~-~~G~  129 (155)
T 2ppt_A          116 IQGIPAFIL--F-HKGR  129 (155)
T ss_dssp             CCSSSEEEE--E-ETTE
T ss_pred             CCcCCEEEE--E-eCCe
Confidence            999999999  8 6883

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.50  E-value=4.4e-14  Score=98.06  Aligned_cols=82  Identities=16%  Similarity=0.328  Sum_probs=62.5

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      ..+++.++...+.+.  ++++++|+||++||++|+.+.|.+++++++++    ++.++.++.+.+               
T Consensus        21 ~~l~~~~~~~~~~~~--~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~~~~~~vd~~~~---------------   79 (124)
T 1faa_A           21 TEVNKDTFWPIVKAA--GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL----DVIFLKLDCNQE---------------   79 (124)
T ss_dssp             EEECTTTHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSST---------------
T ss_pred             EEecchhHHHHHHhc--CCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC----CCEEEEEecCcc---------------
Confidence            445555554443322  68899999999999999999999999998875    267777877621               


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                             ...++++|++.++|++++  + ++|+
T Consensus        80 -------~~~~~~~~~v~~~Pt~~~--~-~~G~  102 (124)
T 1faa_A           80 -------NKTLAKELGIRVVPTFKI--L-KENS  102 (124)
T ss_dssp             -------THHHHHHHCCSSSSEEEE--E-ETTE
T ss_pred             -------hHHHHHHcCCCeeeEEEE--E-eCCc
Confidence                   367889999999999666  4 7883

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.50  E-value=2.4e-14  Score=100.17  Aligned_cols=66  Identities=21%  Similarity=0.458  Sum_probs=57.5

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.+.+++++++    ++.++.|+++.                       ...+++.|+
T Consensus        35 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~-----------------------~~~l~~~~~   87 (125)
T 1r26_A           35 SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDADN-----------------------NSEIVSKCR   87 (125)
T ss_dssp             HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTT-----------------------CHHHHHHTT
T ss_pred             ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC----CCEEEEEECCC-----------------------CHHHHHHcC
Confidence            478899999999999999999999999999873    37888888875                       357889999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      +.++|++++  + ++|
T Consensus        88 v~~~Pt~~i--~-~~G  100 (125)
T 1r26_A           88 VLQLPTFII--A-RSG  100 (125)
T ss_dssp             CCSSSEEEE--E-ETT
T ss_pred             CCcccEEEE--E-eCC
Confidence            999999888  6 688

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.50  E-value=6.3e-14  Score=95.31  Aligned_cols=66  Identities=21%  Similarity=0.425  Sum_probs=57.2

Q ss_pred             CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729          45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH  124 (190)
Q Consensus        45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  124 (190)
                      +++++|+||++||++|+.+.|.+.++++++++   ++.++.|+++.                       ...+++.|++.
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~-----------------------~~~~~~~~~v~   77 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG---KVIFLKVDVDA-----------------------VAAVAEAAGIT   77 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TSEEEEEETTT-----------------------THHHHHHHTCC
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC---CeEEEEEECCc-----------------------hHHHHHHcCCC
Confidence            78999999999999999999999999998864   37888888774                       35789999999


Q ss_pred             CCCeeeeeeecCCCc
Q psy8729         125 GIPSLILLAVEAGGR  139 (190)
Q Consensus       125 ~~P~~~l~~id~~g~  139 (190)
                      ++|++++  + ++|+
T Consensus        78 ~~Pt~~~--~-~~G~   89 (112)
T 1ep7_A           78 AMPTFHV--Y-KDGV   89 (112)
T ss_dssp             BSSEEEE--E-ETTE
T ss_pred             cccEEEE--E-ECCe
Confidence            9999888  6 6883

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.49  E-value=5.1e-14  Score=100.19  Aligned_cols=67  Identities=24%  Similarity=0.359  Sum_probs=58.8

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+.+++++++++   +.++.|+++.                       ...+++.|++
T Consensus        23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~-----------------------~~~l~~~~~v   76 (140)
T 3hz4_A           23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRINIAT-----------------------NPWTAEKYGV   76 (140)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTT-----------------------CHHHHHHHTC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCc-----------------------CHhHHHHCCC
Confidence            6889999999999999999999999999998764   7888888875                       3578899999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++|++++  + ++|+
T Consensus        77 ~~~Pt~~~--~-~~G~   89 (140)
T 3hz4_A           77 QGTPTFKF--F-CHGR   89 (140)
T ss_dssp             CEESEEEE--E-ETTE
T ss_pred             CcCCEEEE--E-eCCc
Confidence            99999999  7 6783

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.49  E-value=5.4e-14  Score=94.36  Aligned_cols=67  Identities=25%  Similarity=0.557  Sum_probs=57.7

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+++++++++++   +.++.++.+.                       +..++++|++
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~-----------------------~~~~~~~~~v   70 (105)
T 1fb6_A           17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDE-----------------------APGIATQYNI   70 (105)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc---eEEEEEcCcc-----------------------hHHHHHhCCC
Confidence            5789999999999999999999999999988653   7888888775                       3578899999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++|++++  + ++|+
T Consensus        71 ~~~Pt~~~--~-~~g~   83 (105)
T 1fb6_A           71 RSIPTVLF--F-KNGE   83 (105)
T ss_dssp             CSSSEEEE--E-ETTE
T ss_pred             CcccEEEE--E-eCCe
Confidence            99999888  6 5783

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.49  E-value=1.6e-13  Score=92.23  Aligned_cols=66  Identities=29%  Similarity=0.675  Sum_probs=57.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+++++++++.   ++.++.++.+.                       +..+++.|++
T Consensus        19 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~-----------------------~~~~~~~~~v   72 (106)
T 1xwb_A           19 SGKLVVLDFFATWCGPCKMISPKLVELSTQFAD---NVVVLKVDVDE-----------------------CEDIAMEYNI   72 (106)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC---CeEEEEEeccc-----------------------hHHHHHHcCC
Confidence            688999999999999999999999999998863   48888888875                       3578899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  + ++|
T Consensus        73 ~~~Pt~~~--~-~~G   84 (106)
T 1xwb_A           73 SSMPTFVF--L-KNG   84 (106)
T ss_dssp             CSSSEEEE--E-ETT
T ss_pred             CcccEEEE--E-cCC
Confidence            99999888  6 578

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.49  E-value=2e-14  Score=99.46  Aligned_cols=66  Identities=21%  Similarity=0.593  Sum_probs=56.9

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.++++++++++    +.++.|++|.                       +..++++|++
T Consensus        33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~-----------------------~~~~~~~~~v   85 (122)
T 2vlu_A           33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN----AVFLKVDVDE-----------------------LKPIAEQFSV   85 (122)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----cEEEEEECCC-----------------------CHHHHHHcCC
Confidence            588999999999999999999999999888753    7788888775                       3578899999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++|++++  + ++|+
T Consensus        86 ~~~Pt~~~--~-~~G~   98 (122)
T 2vlu_A           86 EAMPTFLF--M-KEGD   98 (122)
T ss_dssp             CSSSEEEE--E-ETTE
T ss_pred             CcccEEEE--E-eCCE
Confidence            99999888  6 6883

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.49  E-value=3.2e-14  Score=113.81  Aligned_cols=90  Identities=18%  Similarity=0.341  Sum_probs=71.6

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      .+......+.|++.+++..+.   ..+++++|+|||+||++|+.+.|.+.++++.+.+.   +.++.|++|.+.      
T Consensus        12 ~~~~~~~vv~lt~~~f~~~i~---~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~---~~~~~v~~d~~~------   79 (298)
T 3ed3_A           12 FYDSDPHISELTPKSFDKAIH---NTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV---VQVAAVNCDLNK------   79 (298)
T ss_dssp             SCSSCTTCEECCHHHHHHHHT---SSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTSTT------
T ss_pred             CCCCCCCeEEeCHHHHHHHHH---hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC---cEEEEEEccCcc------
Confidence            333445566777766665553   25788999999999999999999999999998754   788888888433      


Q ss_pred             HhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCC
Q psy8729          99 LSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAG  137 (190)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~  137 (190)
                                     ...+++.|+|.++|++++  ++++
T Consensus        80 ---------------~~~l~~~~~I~~~Pt~~~--~~~g  101 (298)
T 3ed3_A           80 ---------------NKALCAKYDVNGFPTLMV--FRPP  101 (298)
T ss_dssp             ---------------THHHHHHTTCCBSSEEEE--EECC
T ss_pred             ---------------CHHHHHhCCCCccceEEE--EECC
Confidence                           478999999999999999  8654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.48  E-value=5.9e-14  Score=97.03  Aligned_cols=64  Identities=27%  Similarity=0.480  Sum_probs=56.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.++++++++ .   ++.++.|+++.                       ...+++.|++
T Consensus        22 ~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~---~v~~~~vd~~~-----------------------~~~~~~~~~i   74 (118)
T 2f51_A           22 APGLVLVDFFATWCGPCQRLGQILPSIAEAN-K---DVTFIKVDVDK-----------------------NGNAADAYGV   74 (118)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T---TSEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C---CeEEEEEECCC-----------------------CHHHHHhcCC
Confidence            5889999999999999999999999999987 2   47888888875                       3578899999


Q ss_pred             CCCCeeeeeeecC
Q psy8729         124 HGIPSLILLAVEA  136 (190)
Q Consensus       124 ~~~P~~~l~~id~  136 (190)
                      .++|++++  +++
T Consensus        75 ~~~Pt~~~--~~~   85 (118)
T 2f51_A           75 SSIPALFF--VKK   85 (118)
T ss_dssp             CSSSEEEE--EEE
T ss_pred             CCCCEEEE--EeC
Confidence            99999999  865

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.48  E-value=6.5e-14  Score=93.50  Aligned_cols=77  Identities=23%  Similarity=0.467  Sum_probs=62.0

Q ss_pred             ccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCccc
Q psy8729          29 LAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP  108 (190)
Q Consensus        29 l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~  108 (190)
                      +++.+++..+    .++++++|+||++||++|+.+.|.+.++++.+++    +.++.++++.                  
T Consensus         4 l~~~~~~~~~----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~v~~~~------------------   57 (104)
T 2e0q_A            4 LDSKNFDSFL----ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSDE------------------   57 (104)
T ss_dssp             CCTTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTT------------------
T ss_pred             cCHHHHHHHH----hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC----ceEEEEECCC------------------
Confidence            4444444433    3688999999999999999999999999888753    7788888775                  


Q ss_pred             CCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         109 YASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       109 ~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                           +..+++.|++.++|++++  + ++|+
T Consensus        58 -----~~~~~~~~~v~~~Pt~~~--~-~~g~   80 (104)
T 2e0q_A           58 -----NPDIAARYGVMSLPTVIF--F-KDGE   80 (104)
T ss_dssp             -----CHHHHHHTTCCSSCEEEE--E-ETTE
T ss_pred             -----CHHHHHhCCccccCEEEE--E-ECCe
Confidence                 357889999999999999  8 7883

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.48  E-value=1.2e-13  Score=102.15  Aligned_cols=102  Identities=14%  Similarity=0.271  Sum_probs=82.2

Q ss_pred             eeeeeccCCc-EEEEEEEcCCChhhhh-hhHHHHHHHHHHhhcCCcE-EEEEeeCCCCHHHHHHHHhCCCCC-cccCCch
Q psy8729          37 KVLSYIESCQ-VIGLYFSAHWCPPCKA-FTPQLIETYRKLKEDGYQF-EIIFVSSDRSESSYQSYLSGMPWP-AIPYASE  112 (190)
Q Consensus        37 ~~~~~~~~~k-~vlv~F~a~wC~~C~~-~~~~l~~l~~~~~~~g~~~-~ii~i~~d~~~~~~~~~~~~~~~~-~~~~~~~  112 (190)
                      ..++++-+++ ++|+.||+.|||.|.. +++.+++.+++|.+.|  + ++++||.| +....++|.++++.. .+|++.|
T Consensus        39 vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g--~d~VigIS~D-~~~~~~~f~~~~~l~~~f~lLsD  115 (176)
T 4f82_A           39 CSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAG--IDEIWCVSVN-DAFVMGAWGRDLHTAGKVRMMAD  115 (176)
T ss_dssp             EEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCEEEEEESS-CHHHHHHHHHHTTCTTTSEEEEC
T ss_pred             EeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCC--CCEEEEEeCC-CHHHHHHHHHHhCCCCCceEEEc
Confidence            3344432455 4566778999999999 9999999999999875  8 89999998 678899999988865 5999999


Q ss_pred             hHHHHHHHcCCC-----------CCCeeeeeeecCCCceEEEc
Q psy8729         113 TRQSLASLYNVH-----------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus       113 ~~~~~~~~~~v~-----------~~P~~~l~~id~~g~~~i~~  144 (190)
                      .+..++++||+.           ..|.+++  | ++|+++.+.
T Consensus       116 ~~~~va~ayGv~~~~~~~G~g~~s~R~tfI--I-~dG~I~~~~  155 (176)
T 4f82_A          116 GSAAFTHALGLTQDLSARGMGIRSLRYAMV--I-DGGVVKTLA  155 (176)
T ss_dssp             TTCHHHHHHTCEEECGGGTCCEEECCEEEE--E-ETTEEEEEE
T ss_pred             CchHHHHHhCCCccccccCCCcccccEEEE--E-cCCEEEEEE
Confidence            999999999973           2488999  9 999554333

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.48  E-value=3.1e-14  Score=100.62  Aligned_cols=65  Identities=17%  Similarity=0.388  Sum_probs=53.7

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.++++++++     ++.++.|+++.                       ...+++.|++
T Consensus        39 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-----~v~~~~vd~~~-----------------------~~~l~~~~~v   90 (133)
T 3cxg_A           39 QNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-----YVTLVDIDVDI-----------------------HPKLNDQHNI   90 (133)
T ss_dssp             CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-----ECEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-----CEEEEEEeccc-----------------------hHHHHHhcCC
Confidence            5789999999999999999999998876654     36677777664                       3578899999


Q ss_pred             CCCCeeeeeee-cCCC
Q psy8729         124 HGIPSLILLAV-EAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~i-d~~g  138 (190)
                      .++|++++  + +++|
T Consensus        91 ~~~Pt~~~--~~~~~g  104 (133)
T 3cxg_A           91 KALPTFEF--YFNLNN  104 (133)
T ss_dssp             CSSSEEEE--EEEETT
T ss_pred             CCCCEEEE--EEecCC
Confidence            99999999  8 4566

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.48  E-value=8.7e-14  Score=93.43  Aligned_cols=65  Identities=28%  Similarity=0.490  Sum_probs=56.8

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+.++++++++    +.++.++.+.                       ...+++.|++
T Consensus        19 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~vd~~~-----------------------~~~~~~~~~v   71 (105)
T 3m9j_A           19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDD-----------------------CQDVASESEV   71 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT----SEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCeEEEEEECCCChhhHHHHHHHHHHHHHccC----eEEEEEEhhh-----------------------hHHHHHHcCC
Confidence            688999999999999999999999999998743    7788888775                       3578899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  + ++|
T Consensus        72 ~~~Pt~~~--~-~~g   83 (105)
T 3m9j_A           72 KSMPTFQF--F-KKG   83 (105)
T ss_dssp             CBSSEEEE--E-ETT
T ss_pred             CcCcEEEE--E-ECC
Confidence            99999999  8 567

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.48  E-value=1.4e-14  Score=99.38  Aligned_cols=83  Identities=25%  Similarity=0.514  Sum_probs=65.0

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      ..+++.++....    .++++++|+||++||++|+.+.|.+.++++.+++.+.++.++.++++.+               
T Consensus        10 ~~l~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---------------   70 (120)
T 1mek_A           10 LVLRKSNFAEAL----AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE---------------   70 (120)
T ss_dssp             EECCTTTHHHHH----HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC---------------
T ss_pred             EEechhhHHHHH----ccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCC---------------
Confidence            445555554332    3688999999999999999999999999999876544677777776642               


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                              ..++++|++.++|++++  + ++|+
T Consensus        71 --------~~~~~~~~v~~~Pt~~~--~-~~g~   92 (120)
T 1mek_A           71 --------SDLAQQYGVRGYPTIKF--F-RNGD   92 (120)
T ss_dssp             --------CSSHHHHTCCSSSEEEE--E-ESSC
T ss_pred             --------HHHHHHCCCCcccEEEE--E-eCCC
Confidence                    35688999999999999  8 5673

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.48  E-value=1.1e-13  Score=95.19  Aligned_cols=67  Identities=22%  Similarity=0.524  Sum_probs=57.4

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.++++++++++    +.++.|+++.                       +..++++|+
T Consensus        28 ~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~----v~~~~vd~~~-----------------------~~~l~~~~~   80 (114)
T 2oe3_A           28 KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFVKCDVDE-----------------------SPDIAKECE   80 (114)
T ss_dssp             HHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTT-----------------------CHHHHHHTT
T ss_pred             hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCC-----------------------CHHHHHHCC
Confidence            4688999999999999999999999999888753    7788888775                       357889999


Q ss_pred             CCCCCeeeeeeecCCCc
Q psy8729         123 VHGIPSLILLAVEAGGR  139 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~  139 (190)
                      +.++|++++  + ++|+
T Consensus        81 v~~~Pt~~~--~-~~G~   94 (114)
T 2oe3_A           81 VTAMPTFVL--G-KDGQ   94 (114)
T ss_dssp             CCSBSEEEE--E-ETTE
T ss_pred             CCcccEEEE--E-eCCe
Confidence            999999888  6 7883

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.47  E-value=5.9e-14  Score=96.50  Aligned_cols=64  Identities=28%  Similarity=0.583  Sum_probs=55.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.++++++++     ++.++.|+.+.                       ...++++|++
T Consensus        32 ~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-----~~~~~~vd~~~-----------------------~~~~~~~~~v   83 (117)
T 2xc2_A           32 KNKLVVVDFFATWCGPCKTIAPLFKELSEKY-----DAIFVKVDVDK-----------------------LEETARKYNI   83 (117)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-----SSEEEEEETTT-----------------------SHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-----CcEEEEEECCc-----------------------cHHHHHHcCC
Confidence            6889999999999999999999999988776     26788888764                       3578899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  + ++|
T Consensus        84 ~~~Pt~~~--~-~~G   95 (117)
T 2xc2_A           84 SAMPTFIA--I-KNG   95 (117)
T ss_dssp             CSSSEEEE--E-ETT
T ss_pred             CccceEEE--E-eCC
Confidence            99999888  6 678

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.47  E-value=1.6e-13  Score=94.46  Aligned_cols=71  Identities=20%  Similarity=0.466  Sum_probs=55.5

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.+.++++++..     .+..++++....                 .+....+++.|+
T Consensus        27 ~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~-----~v~~~~~~~~~~-----------------~~~~~~~~~~~~   84 (118)
T 1zma_A           27 DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-----HIYFINSEEPSQ-----------------LNDLQAFRSRYG   84 (118)
T ss_dssp             HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-----CCEEEETTCGGG-----------------HHHHHHHHHHHT
T ss_pred             hCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC-----eEEEEECCCcCc-----------------HHHHHHHHHHcC
Confidence            3678899999999999999999999999988753     255666653220                 112467889999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      +.++|++++  +. +|
T Consensus        85 i~~~Pt~~~--~~-~G   97 (118)
T 1zma_A           85 IPTVPGFVH--IT-DG   97 (118)
T ss_dssp             CCSSCEEEE--EE-TT
T ss_pred             CCCCCeEEE--EE-CC
Confidence            999999999  84 77

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.47  E-value=8.2e-14  Score=98.63  Aligned_cols=66  Identities=18%  Similarity=0.519  Sum_probs=57.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+++++++++    ++.++.|++|.                       ...+++.|++
T Consensus        45 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~v~~~~v~~~~-----------------------~~~~~~~~~v   97 (139)
T 3d22_A           45 DGKIVLANFSARWCGPSRQIAPYYIELSENYP----SLMFLVIDVDE-----------------------LSDFSASWEI   97 (139)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTT-----------------------SHHHHHHTTC
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CCEEEEEeCcc-----------------------cHHHHHHcCC
Confidence            58899999999999999999999999998873    37888888875                       3578999999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++|++++  + ++|+
T Consensus        98 ~~~Pt~~~--~-~~G~  110 (139)
T 3d22_A           98 KATPTFFF--L-RDGQ  110 (139)
T ss_dssp             CEESEEEE--E-ETTE
T ss_pred             CcccEEEE--E-cCCe
Confidence            99999998  7 7883

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.46  E-value=2.8e-13  Score=100.25  Aligned_cols=87  Identities=11%  Similarity=0.132  Sum_probs=68.8

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEc-------CCChhhhhhhHHHHHHHHHHhhcC--CcEEEEEeeCCCCHHHH
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSA-------HWCPPCKAFTPQLIETYRKLKEDG--YQFEIIFVSSDRSESSY   95 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a-------~wC~~C~~~~~~l~~l~~~~~~~g--~~~~ii~i~~d~~~~~~   95 (190)
                      ..+.+++.+++..+...  ++.++||+|||       +||++|+.+.|.++++++++....  .++.+..|++|.     
T Consensus        19 ~vi~lt~~nF~~~v~~~--~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~-----   91 (178)
T 3ga4_A           19 GVITVTADNYPLLSRGV--PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNE-----   91 (178)
T ss_dssp             SEEECCTTTHHHHTTCC--TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-----
T ss_pred             CCEECCHHHHHHHHccc--CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECcc-----
Confidence            45678888887655322  56789999999       499999999999999999997221  147888888775     


Q ss_pred             HHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729          96 QSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                                        ++.++++|||.++||+++  +.+++
T Consensus        92 ------------------~~~la~~~~I~siPtl~~--F~~g~  114 (178)
T 3ga4_A           92 ------------------VPQLVKDLKLQNVPHLVV--YPPAE  114 (178)
T ss_dssp             ------------------CHHHHHHTTCCSSCEEEE--ECCCC
T ss_pred             ------------------CHHHHHHcCCCCCCEEEE--EcCCC
Confidence                              468999999999999999  75443

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.46  E-value=5.7e-14  Score=96.91  Aligned_cols=83  Identities=22%  Similarity=0.387  Sum_probs=63.0

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcC--CcEEEEEeeCCCCHHHHHHHHhCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDG--YQFEIIFVSSDRSESSYQSYLSGMP  103 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g--~~~~ii~i~~d~~~~~~~~~~~~~~  103 (190)
                      ...+++.++...+.   .++++++|+||++||++|+.+.|.+.++++++++.+  .++.++.|+++..+           
T Consensus         9 v~~l~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------   74 (121)
T 2djj_A            9 VTVVVAKNYNEIVL---DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-----------   74 (121)
T ss_dssp             SEECCTTTTTTSSS---CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-----------
T ss_pred             eEEecccCHHHHhh---cCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-----------
Confidence            34466666655442   268899999999999999999999999999997621  24778888776421           


Q ss_pred             CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                                   +++  ++.++|++++  ++++|+
T Consensus        75 -------------~~~--~v~~~Pt~~~--~~~~~~   93 (121)
T 2djj_A           75 -------------VPD--EIQGFPTIKL--YPAGAK   93 (121)
T ss_dssp             -------------CSS--CCSSSSEEEE--ECSSCT
T ss_pred             -------------ccc--ccCcCCeEEE--EeCcCC
Confidence                         222  9999999999  988774

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.46  E-value=4.2e-13  Score=103.11  Aligned_cols=102  Identities=20%  Similarity=0.363  Sum_probs=75.1

Q ss_pred             hHHHHHhhhCCCCCCCCCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEE
Q psy8729           5 SDQLYNNLLKPGGSKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEII   84 (190)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii   84 (190)
                      ....+...+.+....+  ......++..++...+    ..+++++|+||++||++|+.+.|.+.++++++.++++++.++
T Consensus       113 l~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~  186 (241)
T 3idv_A          113 IVAKVREVSQPDWTPP--PEVTLVLTKENFDEVV----NDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLA  186 (241)
T ss_dssp             HHHHHHHHHSTTCCCC--CCSSEECCTTTHHHHH----HHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEE
T ss_pred             HHHHHhhccCcccccc--cccceeccHHHHHHhh----ccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEE
Confidence            3444555665554432  1223334455544333    357899999999999999999999999999998765668888


Q ss_pred             EeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729          85 FVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus        85 ~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                      .|+++.                       ...++++|+|.++|++++  ++ +|
T Consensus       187 ~vd~~~-----------------------~~~l~~~~~v~~~Pt~~~--~~-~g  214 (241)
T 3idv_A          187 KVDATA-----------------------ETDLAKRFDVSGYPTLKI--FR-KG  214 (241)
T ss_dssp             EEETTT-----------------------CHHHHHHTTCCSSSEEEE--EE-TT
T ss_pred             EEECCC-----------------------CHHHHHHcCCcccCEEEE--EE-CC
Confidence            888775                       357899999999999999  86 56

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.46  E-value=2.5e-13  Score=116.14  Aligned_cols=97  Identities=20%  Similarity=0.320  Sum_probs=75.1

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCC
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPW  104 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~  104 (190)
                      +...+++.+++..+.   .++++++|+|||+||++|+.+.|.+.++++++.+.+..+.++.|+++.+.            
T Consensus        13 ~V~~Lt~~~f~~~v~---~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~------------   77 (519)
T 3t58_A           13 PLTLLDADSVRPTVL---GSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET------------   77 (519)
T ss_dssp             SSEEECTTTHHHHHS---SCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGG------------
T ss_pred             CcEECChHHHHHHHH---hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccc------------
Confidence            344566666655443   25789999999999999999999999999999874446999999987433            


Q ss_pred             CcccCCchhHHHHHHHcCCCCCCeeeeeeecC---CCceEEEcccc
Q psy8729         105 PAIPYASETRQSLASLYNVHGIPSLILLAVEA---GGRLDVITTEA  147 (190)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~---~g~~~i~~~~~  147 (190)
                               ...+++.|+|.++|++++  +++   +|+......++
T Consensus        78 ---------~~~l~~~~~V~~~PTl~~--f~~g~~~G~~~~~~~g~  112 (519)
T 3t58_A           78 ---------NSAVCREFNIAGFPTVRF--FQAFTKNGSGATLPGAG  112 (519)
T ss_dssp             ---------GHHHHHHTTCCSBSEEEE--ECTTCCSCCCEEECCSS
T ss_pred             ---------cHHHHHHcCCcccCEEEE--EcCcccCCCceeEecCC
Confidence                     578999999999999999  886   55433444433

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.18  E-value=6.1e-15  Score=103.26  Aligned_cols=70  Identities=29%  Similarity=0.550  Sum_probs=57.7

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS  119 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (190)
                      .++++++|+||++||++|+.+.|.+   .++.+.+.+   ++.++.|+++.+.                     ...+++
T Consensus        17 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~---------------------~~~~~~   72 (130)
T 2lst_A           17 AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA---RFVVASVSVDTPE---------------------GQELAR   72 (130)
Confidence            3789999999999999999999999   888887754   3677777765322                     467889


Q ss_pred             HcCCCCCCeeeeeeecC-CC
Q psy8729         120 LYNVHGIPSLILLAVEA-GG  138 (190)
Q Consensus       120 ~~~v~~~P~~~l~~id~-~g  138 (190)
                      .|++.++|++++  +|+ +|
T Consensus        73 ~~~v~~~Pt~~~--~d~~~G   90 (130)
T 2lst_A           73 RYRVPGTPTFVF--LVPKAG   90 (130)
Confidence            999999999999  985 57

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.45  E-value=3e-13  Score=91.97  Aligned_cols=65  Identities=32%  Similarity=0.694  Sum_probs=57.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+++++++++    ++.++.|+++.                       ...++++|++
T Consensus        25 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~-----------------------~~~~~~~~~v   77 (113)
T 1ti3_A           25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP----NVTFLKVDVDE-----------------------LKAVAEEWNV   77 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS----SEEEEEEETTT-----------------------CHHHHHHHHC
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC----CcEEEEEEccc-----------------------cHHHHHhCCC
Confidence            58999999999999999999999999988874    48888888875                       3577899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  + ++|
T Consensus        78 ~~~Pt~~~--~-~~G   89 (113)
T 1ti3_A           78 EAMPTFIF--L-KDG   89 (113)
T ss_dssp             SSTTEEEE--E-ETT
T ss_pred             CcccEEEE--E-eCC
Confidence            99999999  7 578

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.45  E-value=1.6e-14  Score=102.72  Aligned_cols=78  Identities=9%  Similarity=0.211  Sum_probs=62.5

Q ss_pred             ccCCCccceeeeeccCCcEEEEEEEcCC--ChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          29 LAEGTVTTKVLSYIESCQVIGLYFSAHW--CPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        29 l~~~~~~~~~~~~~~~~k~vlv~F~a~w--C~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      +++.+++..+.    +++++||+||++|  |++|+.+.|.|.+++++|.++  .+.++.|++|.                
T Consensus        22 ~t~~~F~~~v~----~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~--~v~~~KVdvDe----------------   79 (140)
T 2qgv_A           22 VSESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDY--TWQVAIADLEQ----------------   79 (140)
T ss_dssp             CCHHHHHHHHH----TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTS--CCEEEECCHHH----------------
T ss_pred             CCHHHHHHHHh----CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCC--eEEEEEEECCC----------------
Confidence            44555554442    5567889999999  999999999999999998642  17788777763                


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                             +..++.+|||.++||+++  + ++|
T Consensus        80 -------~~~lA~~ygV~sIPTlil--F-k~G  101 (140)
T 2qgv_A           80 -------SEAIGDRFGAFRFPATLV--F-TGG  101 (140)
T ss_dssp             -------HHHHHHHHTCCSSSEEEE--E-ETT
T ss_pred             -------CHHHHHHcCCccCCEEEE--E-ECC
Confidence                   678999999999999999  7 688

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.44  E-value=5.6e-13  Score=94.54  Aligned_cols=66  Identities=30%  Similarity=0.576  Sum_probs=56.9

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .++ ++|+||++||++|+.+.|.+.++++++++   ++.++.|+++.                       +..+++.|++
T Consensus        50 ~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~-----------------------~~~l~~~~~v  102 (140)
T 1v98_A           50 APL-TLVDFFAPWCGPCRLVSPILEELARDHAG---RLKVVKVNVDE-----------------------HPGLAARYGV  102 (140)
T ss_dssp             CCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCC-EEEEEECCCCHHHHHHHHHHHHHHHHccC---ceEEEEEECCC-----------------------CHHHHHHCCC
Confidence            345 99999999999999999999999999865   38898888875                       3578899999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++|++++  + ++|+
T Consensus       103 ~~~Pt~~~--~-~~G~  115 (140)
T 1v98_A          103 RSVPTLVL--F-RRGA  115 (140)
T ss_dssp             CSSSEEEE--E-ETTE
T ss_pred             CccCEEEE--E-eCCc
Confidence            99999999  7 6883

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.44  E-value=1.5e-13  Score=93.75  Aligned_cols=68  Identities=24%  Similarity=0.424  Sum_probs=57.0

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.+.++++.++    ++.++.|+++.                       ...++++|+
T Consensus        17 ~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~-----------------------~~~l~~~~~   69 (110)
T 2l6c_A           17 EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP----QVAISSVDSEA-----------------------RPELMKELG   69 (110)
T ss_dssp             TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT----TSCEEEEEGGG-----------------------CHHHHHHTT
T ss_pred             HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC----CcEEEEEcCcC-----------------------CHHHHHHcC
Confidence            467899999999999999999999999887764    36677777664                       357889999


Q ss_pred             CCCCCeeeeeeecCCCce
Q psy8729         123 VHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~~  140 (190)
                      +.++|++++  + ++|+.
T Consensus        70 v~~~Pt~~~--~-~~G~~   84 (110)
T 2l6c_A           70 FERVPTLVF--I-RDGKV   84 (110)
T ss_dssp             CCSSCEEEE--E-ESSSE
T ss_pred             CcccCEEEE--E-ECCEE
Confidence            999999999  8 78843

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.43  E-value=4e-13  Score=89.91  Aligned_cols=65  Identities=25%  Similarity=0.630  Sum_probs=56.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+.+++++++    ++.++.++++.                       ...+++.|++
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~-----------------------~~~~~~~~~v   70 (104)
T 2vim_A           18 KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP----EVEFAKVDVDQ-----------------------NEEAAAKYSV   70 (104)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC----CCEEEEEeccC-----------------------CHHHHHHcCC
Confidence            68899999999999999999999999988874    37788888774                       3578899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  ++ +|
T Consensus        71 ~~~Pt~~~--~~-~g   82 (104)
T 2vim_A           71 TAMPTFVF--IK-DG   82 (104)
T ss_dssp             CSSSEEEE--EE-TT
T ss_pred             ccccEEEE--Ee-CC
Confidence            99999888  74 78

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.43  E-value=4.9e-13  Score=91.21  Aligned_cols=65  Identities=23%  Similarity=0.479  Sum_probs=56.4

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+.+++++++    ++.++.|+++.                       ...++++|++
T Consensus        25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~----~v~~~~vd~~~-----------------------~~~~~~~~~v   77 (112)
T 1syr_A           25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT----KMVFIKVDVDE-----------------------VSEVTEKENI   77 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTT-----------------------THHHHHHTTC
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC----CCEEEEEECCC-----------------------CHHHHHHcCC
Confidence            68899999999999999999999999988874    37788888775                       3478899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  + ++|
T Consensus        78 ~~~Pt~~~--~-~~G   89 (112)
T 1syr_A           78 TSMPTFKV--Y-KNG   89 (112)
T ss_dssp             CSSSEEEE--E-ETT
T ss_pred             CcccEEEE--E-ECC
Confidence            99999888  6 578

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.43  E-value=1.5e-13  Score=95.26  Aligned_cols=68  Identities=22%  Similarity=0.475  Sum_probs=58.8

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.++++++++++.  ++.++.|++|.                       ...+++.|+
T Consensus        31 ~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~--~v~~~~vd~d~-----------------------~~~~~~~~~   85 (121)
T 2j23_A           31 GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD--KVGFYKVDVDE-----------------------QSQIAQEVG   85 (121)
T ss_dssp             SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH--HSEEEEEETTT-----------------------CHHHHHHHT
T ss_pred             cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC--cEEEEEEECcC-----------------------CHHHHHHcC
Confidence            47889999999999999999999999999888764  37888888875                       357889999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      +.++|++++  + ++|
T Consensus        86 v~~~Pt~~~--~-~~G   98 (121)
T 2j23_A           86 IRAMPTFVF--F-KNG   98 (121)
T ss_dssp             CCSSSEEEE--E-ETT
T ss_pred             CCcccEEEE--E-ECC
Confidence            999999999  7 478

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.43  E-value=3.6e-13  Score=93.70  Aligned_cols=80  Identities=19%  Similarity=0.463  Sum_probs=62.1

Q ss_pred             CCcEEEEEEEcC-------CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHH
Q psy8729          44 SCQVIGLYFSAH-------WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQS  116 (190)
Q Consensus        44 ~~k~vlv~F~a~-------wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (190)
                      ++++++|+||++       ||++|+.+.|.+.++++++++   ++.++.|+++... .+               .+....
T Consensus        23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~---~~~~~~vd~~~~~-~~---------------~d~~~~   83 (123)
T 1wou_A           23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE---GCVFIYCQVGEKP-YW---------------KDPNND   83 (123)
T ss_dssp             TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT---TEEEEEEECCCHH-HH---------------HCTTCH
T ss_pred             CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC---CcEEEEEECCCch-hh---------------hchhHH
Confidence            489999999999       999999999999999888754   4888888886321 11               112467


Q ss_pred             HHHHcCCCCCCeeeeeeecCCCceEEEccc
Q psy8729         117 LASLYNVHGIPSLILLAVEAGGRLDVITTE  146 (190)
Q Consensus       117 ~~~~~~v~~~P~~~l~~id~~g~~~i~~~~  146 (190)
                      +++.|++.++|++++  +++.+  ++....
T Consensus        84 ~~~~~~i~~~Pt~~~--~~~~~--~~~g~~  109 (123)
T 1wou_A           84 FRKNLKVTAVPTLLK--YGTPQ--KLVESE  109 (123)
T ss_dssp             HHHHHCCCSSSEEEE--TTSSC--EEEGGG
T ss_pred             HHHHCCCCeeCEEEE--EcCCc--eEeccc
Confidence            888999999999999  98755  454433

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.42  E-value=8.6e-14  Score=97.05  Aligned_cols=82  Identities=30%  Similarity=0.575  Sum_probs=60.7

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCCh--------------hhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCH
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCP--------------PCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSE   92 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~--------------~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~   92 (190)
                      +.+++.+++..+.   .++++++|+||++||+              +|+.+.|.+++++++++++   +.++.|++|.+ 
T Consensus         6 ~~l~~~~f~~~~~---~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~---~~~~~vd~d~~-   78 (123)
T 1oaz_A            6 IHLTDDSFDTDVL---KADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN-   78 (123)
T ss_dssp             EECCSTTHHHHTT---SCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC----------CEEEEEETTSC-
T ss_pred             EecChhhHHHHHH---hCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC---eEEEEEECCCC-
Confidence            4455566544332   3789999999999999              9999999999999888653   78888888753 


Q ss_pred             HHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729          93 SSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                                            ..++++|++.++|++++  + ++|+.
T Consensus        79 ----------------------~~l~~~~~v~~~Pt~~~--~-~~G~~  101 (123)
T 1oaz_A           79 ----------------------PGTAPKYGIRGIPTLLL--F-KNGEV  101 (123)
T ss_dssp             ----------------------TTTGGGGTCCBSSEEEE--E-ESSSE
T ss_pred             ----------------------HHHHHHcCCCccCEEEE--E-ECCEE
Confidence                                  35688999999999999  8 78843

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.42  E-value=4.2e-13  Score=101.78  Aligned_cols=69  Identities=20%  Similarity=0.322  Sum_probs=59.7

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.+.++++++++   .+.++.|+++.                       ...+++.|+
T Consensus       112 ~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~---~v~~~~vd~~~-----------------------~~~l~~~~~  165 (210)
T 3apq_A          112 NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG---LLRIGAVNCGD-----------------------DRMLCRMKG  165 (210)
T ss_dssp             HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT---TBEEEEEETTT-----------------------CHHHHHHTT
T ss_pred             ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC---ceEEEEEECCc-----------------------cHHHHHHcC
Confidence            3688999999999999999999999999999864   38888888775                       357889999


Q ss_pred             CCCCCeeeeeeecCCCce
Q psy8729         123 VHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~~  140 (190)
                      +.++|++++  + ++|+.
T Consensus       166 v~~~Pt~~~--~-~~G~~  180 (210)
T 3apq_A          166 VNSYPSLFI--F-RSGMA  180 (210)
T ss_dssp             CCSSSEEEE--E-CTTSC
T ss_pred             CCcCCeEEE--E-ECCCc
Confidence            999999999  8 78854

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.42  E-value=8.9e-14  Score=98.36  Aligned_cols=71  Identities=21%  Similarity=0.298  Sum_probs=55.0

Q ss_pred             EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCC
Q psy8729          47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGI  126 (190)
Q Consensus        47 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  126 (190)
                      +++|+||++||++|+.+.|.+.+++++++     +.++.|+++.....              ...+....++++|++.++
T Consensus        33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----v~~~~vd~~~~~~~--------------~~~d~~~~l~~~~~v~~~   93 (135)
T 3emx_A           33 DAILAVYSKTCPHCHRDWPQLIQASKEVD-----VPIVMFIWGSLIGE--------------RELSAARLEMNKAGVEGT   93 (135)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHTTCC-----SCEEEEEECTTCCH--------------HHHHHHHHHHHHHTCCSS
T ss_pred             cEEEEEECCcCHhhhHhChhHHHHHHHCC-----CEEEEEECCCchhh--------------hhhhhhHHHHHHcCCcee
Confidence            89999999999999999999999888763     56777877532110              001225788999999999


Q ss_pred             CeeeeeeecCCCc
Q psy8729         127 PSLILLAVEAGGR  139 (190)
Q Consensus       127 P~~~l~~id~~g~  139 (190)
                      |++++  ++ +|+
T Consensus        94 Pt~~~--~~-~G~  103 (135)
T 3emx_A           94 PTLVF--YK-EGR  103 (135)
T ss_dssp             SEEEE--EE-TTE
T ss_pred             CeEEE--Ec-CCE
Confidence            99888  76 783

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.42  E-value=4.6e-13  Score=91.71  Aligned_cols=65  Identities=26%  Similarity=0.631  Sum_probs=56.4

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+++++++++    ++.++.|+.+.                       ...+++.|++
T Consensus        27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~-----------------------~~~~~~~~~v   79 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP----GAIFLKVDVDE-----------------------LKDVAEAYNV   79 (118)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTT-----------------------SHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC----CcEEEEEEccc-----------------------CHHHHHHcCC
Confidence            47899999999999999999999999998875    37788888764                       3578899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  + ++|
T Consensus        80 ~~~Pt~~~--~-~~g   91 (118)
T 2vm1_A           80 EAMPTFLF--I-KDG   91 (118)
T ss_dssp             CSBSEEEE--E-ETT
T ss_pred             CcCcEEEE--E-eCC
Confidence            99999988  7 678

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.40  E-value=4.9e-13  Score=112.41  Aligned_cols=87  Identities=13%  Similarity=0.146  Sum_probs=69.1

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcC-----CcEEEEEeeCCCCHHHHHHHH
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDG-----YQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g-----~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      ....+++.+++..+...  .++++||+|||+||++|+.+.|.+.++++++....     ..+.++.|++|.         
T Consensus        24 ~V~~Lt~~~F~~~l~~~--~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~---------   92 (470)
T 3qcp_A           24 SVVDLSGDDFSRVHRVA--PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS---------   92 (470)
T ss_dssp             TEEECSCSCGGGTCTTG--GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT---------
T ss_pred             CcEECCHHHHHHHHHhC--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC---------
Confidence            45556677776554322  45789999999999999999999999999987432     148898898875         


Q ss_pred             hCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         100 SGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                                    ...++++|+|.++||+++  ++++|
T Consensus        93 --------------~~~la~~y~V~~~PTlil--f~~gg  115 (470)
T 3qcp_A           93 --------------EVDLCRKYDINFVPRLFF--FYPRD  115 (470)
T ss_dssp             --------------CHHHHHHTTCCSSCEEEE--EEESS
T ss_pred             --------------CHHHHHHcCCCccCeEEE--EECCC
Confidence                          357899999999999999  87655

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.39  E-value=1.1e-12  Score=96.81  Aligned_cols=80  Identities=16%  Similarity=0.179  Sum_probs=56.9

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHH---HHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQ---LIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS  119 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~---l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (190)
                      .++|+|+|+||++||++|+.+.++   ..++++.+.+.   +.++.|+.|...+..+.|.               ..+..
T Consensus        37 ~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~---fv~ikVD~de~~~l~~~y~---------------~~~q~   98 (173)
T 3ira_A           37 KENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA---FVSIKVDREERPDIDNIYM---------------TVCQI   98 (173)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH---CEEEEEETTTCHHHHHHHH---------------HHHHH
T ss_pred             HhCCCEEEecccchhHhhccccccccCCHHHHHHHHhc---CceeeeCCcccCcHHHHHH---------------HHHHH
Confidence            479999999999999999999883   24556666543   6677777765544333332               11222


Q ss_pred             HcCCCCCCeeeeeeecCCCceEEEc
Q psy8729         120 LYNVHGIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus       120 ~~~v~~~P~~~l~~id~~g~~~i~~  144 (190)
                      .+|+.++|++++  ++++|  +++.
T Consensus        99 ~~gv~g~Pt~v~--l~~dG--~~v~  119 (173)
T 3ira_A           99 ILGRGGWPLNII--MTPGK--KPFF  119 (173)
T ss_dssp             HHSCCCSSEEEE--ECTTS--CEEE
T ss_pred             HcCCCCCcceee--ECCCC--Ccee
Confidence            359999999999  99999  5554

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.39  E-value=2.7e-13  Score=94.08  Aligned_cols=61  Identities=13%  Similarity=0.172  Sum_probs=51.8

Q ss_pred             CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729          45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH  124 (190)
Q Consensus        45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  124 (190)
                      +++++|+||++||++|+.+.|.|.+++++|+    ++.++.|++|.                        .  .++|+|.
T Consensus        23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~----~v~f~kvd~d~------------------------~--~~~~~v~   72 (118)
T 3evi_A           23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFP----ETKFVKAIVNS------------------------C--IQHYHDN   72 (118)
T ss_dssp             TCEEEEEEECTTSHHHHHHHHHHHHHHHHCT----TSEEEEEEGGG------------------------T--STTCCGG
T ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CCEEEEEEhHH------------------------h--HHHCCCC
Confidence            4599999999999999999999999999885    36788887762                        1  3689999


Q ss_pred             CCCeeeeeeecCCC
Q psy8729         125 GIPSLILLAVEAGG  138 (190)
Q Consensus       125 ~~P~~~l~~id~~g  138 (190)
                      ++||+++  + ++|
T Consensus        73 ~~PT~~~--f-k~G   83 (118)
T 3evi_A           73 CLPTIFV--Y-KNG   83 (118)
T ss_dssp             GCSEEEE--E-ETT
T ss_pred             CCCEEEE--E-ECC
Confidence            9999999  7 577

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.37  E-value=6.7e-14  Score=102.43  Aligned_cols=70  Identities=19%  Similarity=0.435  Sum_probs=53.7

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.|.++.+.+...   +.++.|+++.+.+                      .+...|+
T Consensus        44 ~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~---~~~~~v~~d~~~~----------------------~~~~~~~   98 (164)
T 1sen_A           44 ASGLPLMVIIHKSWCGACKALKPKFAESTEISELS---HNFVMVNLEDEEE----------------------PKDEDFS   98 (164)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH---TTSEEEEEEGGGS----------------------CSCGGGC
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC---CeEEEEEecCCch----------------------HHHHHhc
Confidence            47899999999999999999999999977665432   4567777764321                      1345677


Q ss_pred             C--CCCCeeeeeeecCCCc
Q psy8729         123 V--HGIPSLILLAVEAGGR  139 (190)
Q Consensus       123 v--~~~P~~~l~~id~~g~  139 (190)
                      +  .++|++++  +|++|+
T Consensus        99 ~~~~~~Pt~~~--~d~~G~  115 (164)
T 1sen_A           99 PDGGYIPRILF--LDPSGK  115 (164)
T ss_dssp             TTCSCSSEEEE--ECTTSC
T ss_pred             ccCCcCCeEEE--ECCCCC
Confidence            7  66999999  999993

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.06  E-value=4.8e-14  Score=94.48  Aligned_cols=67  Identities=27%  Similarity=0.589  Sum_probs=56.7

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|.||++||++|+.+.|.++++++++++   ++.++.++.+.                       +..+++.|+
T Consensus        17 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~-----------------------~~~~~~~~~   70 (106)
T 2yj7_A           17 KSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG---KVKVVKVNVDE-----------------------NPNTAAQYG   70 (106)
Confidence            3688999999999999999999999999988864   36777776653                       356788999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      +.++|++++  + ++|
T Consensus        71 v~~~Pt~~~--~-~~g   83 (106)
T 2yj7_A           71 IRSIPTLLL--F-KNG   83 (106)
Confidence            999999999  8 678

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.36  E-value=1.2e-12  Score=107.80  Aligned_cols=83  Identities=23%  Similarity=0.365  Sum_probs=65.6

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcC---CcEEEEEeeCCCCHHHHHHHHhCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDG---YQFEIIFVSSDRSESSYQSYLSGM  102 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g---~~~~ii~i~~d~~~~~~~~~~~~~  102 (190)
                      .+.|++.+++..+    .++++++|+|||+||++|+.+.|.+.++++.+++.+   .++.++.|+++.            
T Consensus         7 v~~l~~~~f~~~~----~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~------------   70 (382)
T 2r2j_A            7 ITSLDTENIDEIL----NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ------------   70 (382)
T ss_dssp             -CBCCTTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTT------------
T ss_pred             eEECCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCc------------
Confidence            3456666665433    267899999999999999999999999999986431   248888888775            


Q ss_pred             CCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         103 PWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                                 ...++++|+|.++||+++  + ++|
T Consensus        71 -----------~~~l~~~~~v~~~Pt~~~--f-~~G   92 (382)
T 2r2j_A           71 -----------HSDIAQRYRISKYPTLKL--F-RNG   92 (382)
T ss_dssp             -----------CHHHHHHTTCCEESEEEE--E-ETT
T ss_pred             -----------cHHHHHhcCCCcCCEEEE--E-eCC
Confidence                       357899999999999999  7 467

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.35  E-value=6.2e-13  Score=85.84  Aligned_cols=60  Identities=18%  Similarity=0.414  Sum_probs=50.8

Q ss_pred             cEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCC
Q psy8729          46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHG  125 (190)
Q Consensus        46 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  125 (190)
                      .++++.||++||++|+...|.++++++++++   ++.++.++++.+                       ..+.++|++.+
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~-----------------------~~~~~~~~v~~   56 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD---AVEVEYINVMEN-----------------------PQKAMEYGIMA   56 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS---SEEEEEEESSSS-----------------------CCTTTSTTTCC
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC---ceEEEEEECCCC-----------------------HHHHHHCCCcc
Confidence            4789999999999999999999999998863   488888988753                       34577899999


Q ss_pred             CCeeee
Q psy8729         126 IPSLIL  131 (190)
Q Consensus       126 ~P~~~l  131 (190)
                      +|++++
T Consensus        57 ~Pt~~~   62 (85)
T 1fo5_A           57 VPTIVI   62 (85)
T ss_dssp             SSEEEE
T ss_pred             cCEEEE
Confidence            998766

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.34  E-value=2e-13  Score=98.71  Aligned_cols=78  Identities=8%  Similarity=0.108  Sum_probs=53.7

Q ss_pred             ccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHH--HHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCc
Q psy8729          34 VTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETY--RKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS  111 (190)
Q Consensus        34 ~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~--~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~  111 (190)
                      .+..+.....++++++|+|||+||++|+.+.|.+.+..  .++.+.    .++.|++|.+.                   
T Consensus        33 ~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~----~fv~V~vD~e~-------------------   89 (151)
T 3ph9_A           33 YEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQN----KFIMLNLMHET-------------------   89 (151)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHH----TCEEEEESSCC-------------------
T ss_pred             HHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhc----CeEEEEecCCc-------------------
Confidence            33444444447999999999999999999999887532  222221    25556665321                   


Q ss_pred             hhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         112 ETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       112 ~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                         ......|++.++||+++  ++++|+
T Consensus        90 ---~~~~~~~~v~~~PT~~f--~~~~G~  112 (151)
T 3ph9_A           90 ---TDKNLSPDGQYVPRIMF--VDPSLT  112 (151)
T ss_dssp             ---SCGGGCTTCCCSSEEEE--ECTTSC
T ss_pred             ---hhhHhhcCCCCCCEEEE--ECCCCC
Confidence               11245788999999999  999993

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.34  E-value=4.2e-12  Score=103.49  Aligned_cols=81  Identities=21%  Similarity=0.300  Sum_probs=62.3

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      ...+.+.++...+.   .++++++|+||++||++|+.+.|.+.++++.+++. .++.++.|+.+.+.             
T Consensus       251 v~~l~~~~f~~~~~---~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~-~~v~~~~vd~~~~~-------------  313 (361)
T 3uem_A          251 VKVLVGKNFEDVAF---DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDH-ENIVIAKMDSTANE-------------  313 (361)
T ss_dssp             SEEECTTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTC-SSEEEEEEETTTCB-------------
T ss_pred             cEEeecCchhhhcc---cCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccC-CcEEEEEEECCccc-------------
Confidence            33455555544442   36889999999999999999999999999999865 35777777765321             


Q ss_pred             cccCCchhHHHHHHHcCCCCCCeeeeeeecCC
Q psy8729         106 AIPYASETRQSLASLYNVHGIPSLILLAVEAG  137 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~  137 (190)
                                  ++.|+|.++|++++  +.++
T Consensus       314 ------------~~~~~v~~~Pt~~~--~~~~  331 (361)
T 3uem_A          314 ------------VEAVKVHSFPTLKF--FPAS  331 (361)
T ss_dssp             ------------CSSCCCCSSSEEEE--ECSS
T ss_pred             ------------hhhcCCcccCeEEE--EECC
Confidence                        46789999999999  8655

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.33  E-value=2.2e-12  Score=91.25  Aligned_cols=64  Identities=13%  Similarity=0.231  Sum_probs=53.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+++++|+||++||++|+.+.|.|.++++++.    ++.++.|+++..                          .+.|+|
T Consensus        29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~~~~--------------------------~~~~~i   78 (135)
T 2dbc_A           29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP----ETKFVKAIVNSC--------------------------IEHYHD   78 (135)
T ss_dssp             SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS----SEEEEEECCSSS--------------------------CSSCCS
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC----CcEEEEEEhhcC--------------------------cccCCC
Confidence            45799999999999999999999999998873    477888877642                          158999


Q ss_pred             CCCCeeeeeeecCCCce
Q psy8729         124 HGIPSLILLAVEAGGRL  140 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~~  140 (190)
                      .++||+++  ++ +|+.
T Consensus        79 ~~~Pt~~~--~~-~G~~   92 (135)
T 2dbc_A           79 NCLPTIFV--YK-NGQI   92 (135)
T ss_dssp             SCCSEEEE--ES-SSSC
T ss_pred             CCCCEEEE--EE-CCEE
Confidence            99999999  85 7743

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.33  E-value=4.2e-12  Score=107.99  Aligned_cols=84  Identities=23%  Similarity=0.434  Sum_probs=68.7

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCC
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP  103 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~  103 (190)
                      .....+++.+++..+    .++++++|.||++||++|+.+.|.+.++++.+++.  ++.++.|+++.             
T Consensus        14 ~~v~~l~~~~f~~~~----~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~--~v~~~~vd~~~-------------   74 (504)
T 2b5e_A           14 SAVVKLATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--NITLAQIDCTE-------------   74 (504)
T ss_dssp             SSCEECCTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT--TCEEEEEETTT-------------
T ss_pred             CCcEECCHHHHHHHH----hcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccC--CeEEEEEECCC-------------
Confidence            345667777776543    36889999999999999999999999999998764  48888888775             


Q ss_pred             CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                                ...++++|+|.++||+++  +. +|+
T Consensus        75 ----------~~~l~~~~~v~~~Pt~~~--~~-~g~   97 (504)
T 2b5e_A           75 ----------NQDLCMEHNIPGFPSLKI--FK-NSD   97 (504)
T ss_dssp             ----------CHHHHHHTTCCSSSEEEE--EE-TTC
T ss_pred             ----------CHHHHHhcCCCcCCEEEE--Ee-CCc
Confidence                      357899999999999999  75 453

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.33  E-value=1.3e-12  Score=110.38  Aligned_cols=81  Identities=23%  Similarity=0.413  Sum_probs=63.7

Q ss_pred             ccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCccc
Q psy8729          29 LAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP  108 (190)
Q Consensus        29 l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~  108 (190)
                      +.+.++...+.   .++++++|+|||+||++|+.+.|.+.++++.+.+. .++.++.|+.+.+                 
T Consensus       357 ~~~~~~~~~~~---~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~~v~~~~id~~~~-----------------  415 (481)
T 3f8u_A          357 VVAENFDEIVN---NENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKD-PNIVIAKMDATAN-----------------  415 (481)
T ss_dssp             ECTTTHHHHHT---CTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTC-SSEEEEEEETTSS-----------------
T ss_pred             ecccCHHHHhh---cCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccC-CCEEEEEEECCch-----------------
Confidence            44444443332   25899999999999999999999999999999865 3588888877642                 


Q ss_pred             CCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         109 YASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       109 ~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                             .+.+.|++.++||+++  ++++|+
T Consensus       416 -------~~~~~~~v~~~Pt~~~--~~~~~~  437 (481)
T 3f8u_A          416 -------DVPSPYEVRGFPTIYF--SPANKK  437 (481)
T ss_dssp             -------CCCTTCCCCSSSEEEE--ECTTCT
T ss_pred             -------hhHhhCCCcccCEEEE--EeCCCe
Confidence                   3456899999999999  988774

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.32  E-value=6.5e-13  Score=85.74  Aligned_cols=59  Identities=15%  Similarity=0.278  Sum_probs=49.7

Q ss_pred             EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCC
Q psy8729          47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGI  126 (190)
Q Consensus        47 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  126 (190)
                      ++++.||++||++|+...|.++++++++++   ++.++.++++.+                       ..+.+.||+.++
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~-----------------------~~~~~~~~v~~~   56 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD---KIDVEKIDIMVD-----------------------REKAIEYGLMAV   56 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCS---SCCEEEECTTTC-----------------------GGGGGGTCSSCS
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcC---CeEEEEEECCCC-----------------------HHHHHhCCceee
Confidence            368999999999999999999999999864   377888887753                       356789999999


Q ss_pred             Ceeee
Q psy8729         127 PSLIL  131 (190)
Q Consensus       127 P~~~l  131 (190)
                      |++++
T Consensus        57 Pt~~~   61 (85)
T 1nho_A           57 PAIAI   61 (85)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            98776

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.31  E-value=4.1e-12  Score=94.54  Aligned_cols=117  Identities=20%  Similarity=0.241  Sum_probs=87.8

Q ss_pred             CCcccceeccC--C---------Cc----cceeeeeccCCcEEEEEEE-cCCChhhh-hhhHHHHHHHHHH-hhcCCcE-
Q psy8729          21 AKKTYNIGLAE--G---------TV----TTKVLSYIESCQVIGLYFS-AHWCPPCK-AFTPQLIETYRKL-KEDGYQF-   81 (190)
Q Consensus        21 ~~~~~~~~l~~--~---------~~----~~~~~~~~~~~k~vlv~F~-a~wC~~C~-~~~~~l~~l~~~~-~~~g~~~-   81 (190)
                      +...|+|++.+  .         ++    ....++.+..++++||+|| +.|||.|. .+++.+++.+.++ .+.|  + 
T Consensus         4 Gd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g--~~   81 (182)
T 1xiy_A            4 NDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN--FD   81 (182)
T ss_dssp             TCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC--CS
T ss_pred             CCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCC--Cc
Confidence            34567777765  2         33    3444444226777777776 89999999 9999999999999 7764  7 


Q ss_pred             EEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC-----------CCCeeeeeeecCCCceEEE
Q psy8729          82 EIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH-----------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        82 ~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----------~~P~~~l~~id~~g~~~i~  143 (190)
                      .+++||.| +....++|.++++...++++.|.+..++++||+.           .....++  || +|+++.+
T Consensus        82 ~V~gvS~D-~~~~~~~~~~~~~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfv--Id-dG~V~~~  150 (182)
T 1xiy_A           82 DIYCITNN-DIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAI--VE-NNILVKM  150 (182)
T ss_dssp             EEEEEESS-CHHHHHHHHHHTTCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEE--EE-TTEEEEE
T ss_pred             EEEEEeCC-CHHHHHHHHHHcCCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEE--Ec-CCEEEEE
Confidence            48999998 6777888988887546899999999999999973           2467788  98 9954433

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.31  E-value=1.4e-12  Score=101.45  Aligned_cols=65  Identities=14%  Similarity=0.242  Sum_probs=54.1

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      +++++||+||++||++|+.+.|.|.+++++|+    ++.++.|+++.                        ..++..|++
T Consensus       132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~----~v~f~kVd~d~------------------------~~l~~~~~I  183 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP----MVKFCKIKASN------------------------TGAGDRFSS  183 (245)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT----TSEEEEEEHHH------------------------HCCTTSSCT
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC----CCEEEEEeCCc------------------------HHHHHHCCC
Confidence            58899999999999999999999999999885    36777776641                        235678999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++||+++  +. +|+
T Consensus       184 ~~~PTll~--~~-~G~  196 (245)
T 1a0r_P          184 DVLPTLLV--YK-GGE  196 (245)
T ss_dssp             TTCSEEEE--EE-TTE
T ss_pred             CCCCEEEE--EE-CCE
Confidence            99999999  75 783

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.31  E-value=1.1e-12  Score=93.90  Aligned_cols=78  Identities=14%  Similarity=0.270  Sum_probs=51.8

Q ss_pred             eccCCCccceeeeeccCCcEEEEEEEcCC--ChhhhhhhHHHHHHHHHHhhcCCcEE--EEEeeCCCCHHHHHHHHhCCC
Q psy8729          28 GLAEGTVTTKVLSYIESCQVIGLYFSAHW--CPPCKAFTPQLIETYRKLKEDGYQFE--IIFVSSDRSESSYQSYLSGMP  103 (190)
Q Consensus        28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~w--C~~C~~~~~~l~~l~~~~~~~g~~~~--ii~i~~d~~~~~~~~~~~~~~  103 (190)
                      .+++.+++..+.    +++.++|+||++|  |++|+.+.|.|.+++++| ++   +.  ++.|++|.             
T Consensus        21 ~l~~~~f~~~i~----~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~---v~~~~~~Vd~d~-------------   79 (142)
T 2es7_A           21 PVEASTVDDWIK----RVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ---FDWQVAVADLEQ-------------   79 (142)
T ss_dssp             ECCCC------------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TT---SCCEEEEECHHH-------------
T ss_pred             ccccccHHHHHH----hCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc---cceeEEEEECCC-------------
Confidence            345555554443    3445788899887  999999999999999988 43   55  77776653             


Q ss_pred             CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                                ...++++|+|.++||+++  + ++|+
T Consensus        80 ----------~~~la~~~~V~~iPT~~~--f-k~G~  102 (142)
T 2es7_A           80 ----------SEAIGDRFNVRRFPATLV--F-TDGK  102 (142)
T ss_dssp             ----------HHHHHHTTTCCSSSEEEE--E-SCC-
T ss_pred             ----------CHHHHHhcCCCcCCeEEE--E-eCCE
Confidence                      568899999999999999  8 7883

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.30  E-value=3.8e-12  Score=103.60  Aligned_cols=80  Identities=20%  Similarity=0.291  Sum_probs=62.9

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHH-------HHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQ-------LIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~-------l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      +.|++.+++..+    .++++++|+|||+||+ |+.+.|.       +.++++.+.+.  ++.+..|+++.         
T Consensus        14 ~~l~~~~f~~~i----~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~--~v~~~~Vd~~~---------   77 (350)
T 1sji_A           14 VSLTEKNFKQVL----KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHK--DIGFVMVDAKK---------   77 (350)
T ss_dssp             EEECHHHHHHHH----TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGS--SEEEEEEETTT---------
T ss_pred             EECCHHHHHHHH----hhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhc--CcEEEEEeCCC---------
Confidence            344444444332    3678999999999999 9999999       88888888764  48888888875         


Q ss_pred             hCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         100 SGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                                    ...++++|+|.++||+++  + ++|+
T Consensus        78 --------------~~~l~~~~~v~~~Pt~~~--~-~~g~  100 (350)
T 1sji_A           78 --------------EAKLAKKLGFDEEGSLYV--L-KGDR  100 (350)
T ss_dssp             --------------THHHHHHHTCCSTTEEEE--E-ETTE
T ss_pred             --------------CHHHHHhcCCCccceEEE--E-ECCc
Confidence                          357899999999999999  8 5673

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.30  E-value=9.7e-12  Score=91.57  Aligned_cols=121  Identities=11%  Similarity=0.160  Sum_probs=91.5

Q ss_pred             CCCCCCcccceeccCCC-ccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEE-EEEeeCCCCHH
Q psy8729          17 GSKGAKKTYNIGLAEGT-VTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFE-IIFVSSDRSES   93 (190)
Q Consensus        17 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~-ii~i~~d~~~~   93 (190)
                      ....+..+|+|++.+.. +....++.+..++++||+|| +.|||.|..+++.+++.+.++.+.|  ++ +++||.| +..
T Consensus        13 ~~~vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~g--v~~VigIS~D-~~~   89 (171)
T 2xhf_A           13 PIKVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEG--YHTIACIAVN-DPF   89 (171)
T ss_dssp             CCCTTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTT--CCEEEEEESS-CHH
T ss_pred             cccCcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CCEEEEEeCC-CHH
Confidence            34446677888887433 14455555336788888887 7899999999999999999999874  75 9999998 677


Q ss_pred             HHHHHHhCCCC-CcccCCchhHHHHHHHcCCC-----------CCCeeeeeeecCCCceEEE
Q psy8729          94 SYQSYLSGMPW-PAIPYASETRQSLASLYNVH-----------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        94 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~-----------~~P~~~l~~id~~g~~~i~  143 (190)
                      ..++|.++.+. ..++++.|.+..++++||+.           ..-.+++  || +|+++.+
T Consensus        90 ~~~~w~~~~~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfv--Id-dG~V~~~  148 (171)
T 2xhf_A           90 VMAAWGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAML--ID-DNKIRSV  148 (171)
T ss_dssp             HHHHHHHHHCTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEE--EE-TTEEEEE
T ss_pred             HHHHHHHhcCCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEE--Ee-CCEEEEE
Confidence            78888887764 36899999999999999974           2346688  98 9954433

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.29  E-value=9.6e-12  Score=94.77  Aligned_cols=70  Identities=20%  Similarity=0.228  Sum_probs=56.5

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcC-CcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDG-YQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g-~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .+++++|.||++||++|+.+.|.+++++++++++| .++.++.|+++.                       +..+++.|+
T Consensus       133 ~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~  189 (226)
T 1a8l_A          133 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-----------------------YPEWADQYN  189 (226)
T ss_dssp             CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG-----------------------CHHHHHHTT
T ss_pred             CCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEccc-----------------------CHHHHHhCC
Confidence            34455999999999999999999999999987321 248888887764                       357889999


Q ss_pred             CCCCCeeeeeeecCCCc
Q psy8729         123 VHGIPSLILLAVEAGGR  139 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~  139 (190)
                      |.++|++++  + ++|+
T Consensus       190 v~~~Pt~~~--~-~~G~  203 (226)
T 1a8l_A          190 VMAVPKIVI--Q-VNGE  203 (226)
T ss_dssp             CCSSCEEEE--E-ETTE
T ss_pred             CcccCeEEE--E-eCCc
Confidence            999999888  6 5773

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.29  E-value=1.3e-11  Score=84.19  Aligned_cols=75  Identities=12%  Similarity=0.178  Sum_probs=60.2

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+|+|+||++|+...|.++++.+.  .   ++.++.|.+|...+                   ..+.++..||
T Consensus        22 ~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~---~v~~~~vdVde~r~-------------------~Sn~IA~~~~   77 (112)
T 3iv4_A           22 EENKYVFVLKHSETCPISANAYDQFNKFLYE--R---DMDGYYLIVQQERD-------------------LSDYIAKKTN   77 (112)
T ss_dssp             HHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--H---TCCEEEEEGGGGHH-------------------HHHHHHHHHT
T ss_pred             hcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--C---CceEEEEEeecCch-------------------hhHHHHHHhC
Confidence            3588999999999999999999999998874  2   37788888875431                   1367899999


Q ss_pred             CC-CCCeeeeeeecCCCceEEEccc
Q psy8729         123 VH-GIPSLILLAVEAGGRLDVITTE  146 (190)
Q Consensus       123 v~-~~P~~~l~~id~~g~~~i~~~~  146 (190)
                      |. ..|++++  + ++|  +.+...
T Consensus        78 V~h~sPq~il--~-k~G--~~v~~~   97 (112)
T 3iv4_A           78 VKHESPQAFY--F-VNG--EMVWNR   97 (112)
T ss_dssp             CCCCSSEEEE--E-ETT--EEEEEE
T ss_pred             CccCCCeEEE--E-ECC--EEEEEe
Confidence            99 6999999  8 788  555443

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.28  E-value=4e-13  Score=93.68  Aligned_cols=66  Identities=27%  Similarity=0.610  Sum_probs=56.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+.+++++++    ++.++.|+++.                       ...++++|++
T Consensus        35 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~-----------------------~~~~~~~~~v   87 (130)
T 1wmj_A           35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP----GAVFLKVDVDE-----------------------LKEVAEKYNV   87 (130)
T ss_dssp             TTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT----TBCCEECCTTT-----------------------SGGGHHHHTC
T ss_pred             cCCEEEEEEECCCChhHHHHHHHHHHHHHHCC----CCEEEEEeccc-----------------------hHHHHHHcCC
Confidence            58899999999999999999999999998875    36777777764                       3467889999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++|++++  + ++|+
T Consensus        88 ~~~Pt~~~--~-~~g~  100 (130)
T 1wmj_A           88 EAMPTFLF--I-KDGA  100 (130)
T ss_dssp             CSSCCCCB--C-TTTT
T ss_pred             CccceEEE--E-eCCe
Confidence            99999988  7 6783

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.28  E-value=2.1e-11  Score=77.27  Aligned_cols=62  Identities=13%  Similarity=0.248  Sum_probs=49.5

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729          48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP  127 (190)
Q Consensus        48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P  127 (190)
                      ..|.||++||++|+.+.|.++++++++..   ++.++.|+ +                         ..+.++|++.++|
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~---~~~~~~v~-~-------------------------~~~~~~~~v~~~P   52 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGI---DAEFEKIK-E-------------------------MDQILEAGLTALP   52 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTC---CEEEEEEC-S-------------------------HHHHHHHTCSSSS
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCC---ceEEEEec-C-------------------------HHHHHHCCCCcCC
Confidence            35899999999999999999999988764   36776665 1                         4678899999999


Q ss_pred             eeeeeeecCCCceEEEcc
Q psy8729         128 SLILLAVEAGGRLDVITT  145 (190)
Q Consensus       128 ~~~l~~id~~g~~~i~~~  145 (190)
                      ++++     +|  +++..
T Consensus        53 t~~~-----~G--~~~~~   63 (77)
T 1ilo_A           53 GLAV-----DG--ELKIM   63 (77)
T ss_dssp             CEEE-----TT--EEEEC
T ss_pred             EEEE-----CC--EEEEc
Confidence            8766     68  55544

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.27  E-value=6.6e-12  Score=106.10  Aligned_cols=82  Identities=21%  Similarity=0.392  Sum_probs=65.8

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      +.|++.+++..+.+. ..+++++|+||++||++|+.+.|.+.++++.+++.   +.++.|+++.                
T Consensus         4 ~~l~~~~f~~~i~~~-~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~---v~~~~vd~~~----------------   63 (481)
T 3f8u_A            4 LELTDDNFESRISDT-GSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI---VPLAKVDCTA----------------   63 (481)
T ss_dssp             EEECTTTHHHHTTCC-SSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CCEEEEETTT----------------
T ss_pred             EEecHHHHHHHHHhC-CCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc---eEEEEEECCC----------------
Confidence            456666666555321 23489999999999999999999999999998764   7788888775                


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                             ...++++|+|.++||+++  + ++|
T Consensus        64 -------~~~l~~~~~v~~~Ptl~~--~-~~g   85 (481)
T 3f8u_A           64 -------NTNTCNKYGVSGYPTLKI--F-RDG   85 (481)
T ss_dssp             -------CHHHHHHTTCCEESEEEE--E-ETT
T ss_pred             -------CHHHHHhcCCCCCCEEEE--E-eCC
Confidence                   358899999999999999  7 567

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.27  E-value=2.4e-11  Score=94.25  Aligned_cols=65  Identities=17%  Similarity=0.109  Sum_probs=53.4

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcC-CcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDG-YQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g-~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++.||++||++|+.+.|.+++++..++..+ +++.+..|+++.                       ...++++|+
T Consensus       137 ~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~-----------------------~~~~~~~~~  193 (243)
T 2hls_A          137 KGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE-----------------------NPDIADKYG  193 (243)
T ss_dssp             CSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT-----------------------CHHHHHHTT
T ss_pred             CCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECcc-----------------------CHHHHHHcC
Confidence            47788999999999999999999999999985211 358888887764                       356788999


Q ss_pred             CCCCCeeee
Q psy8729         123 VHGIPSLIL  131 (190)
Q Consensus       123 v~~~P~~~l  131 (190)
                      |.++|++++
T Consensus       194 V~~vPt~~i  202 (243)
T 2hls_A          194 VMSVPSIAI  202 (243)
T ss_dssp             CCSSSEEEE
T ss_pred             CeeeCeEEE
Confidence            999999876

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.23  E-value=9.2e-13  Score=89.62  Aligned_cols=64  Identities=16%  Similarity=0.389  Sum_probs=46.5

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+++++|+|||+||++|+.+.|.+.+++++++       .+-+..+...                   +....++++|+|
T Consensus        11 ~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~-------~v~~~~~~~~-------------------~~~~~l~~~~~V   64 (106)
T 3kp8_A           11 LRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP-------YVECSPNGPG-------------------TPQAQECTEAGI   64 (106)
T ss_dssp             HHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC-------EEESCTTCTT-------------------SCCCHHHHHTTC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC-------EEEEeccccc-------------------chhHHHHHHcCC
Confidence            46677899999999999999999988875542       3333332210                   014688999999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|| ++  +  +|
T Consensus        65 ~~~PT-~~--i--~G   74 (106)
T 3kp8_A           65 TSYPT-WI--I--NG   74 (106)
T ss_dssp             CSSSE-EE--E--TT
T ss_pred             eEeCE-EE--E--CC
Confidence            99999 45  5  67

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.23  E-value=1e-12  Score=90.68  Aligned_cols=70  Identities=17%  Similarity=0.253  Sum_probs=49.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      +...++|+||++||++|+.+.+.+...++.... +..+.++.|+++.+.                     ...++..|+|
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~-~~~~~l~~vdv~~~~---------------------~~~la~~~~V   74 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPL---------------------PPGLELARPV   74 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH-HHHSCEEEEETTSCC---------------------CTTCBCSSCC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh-cccceEEEEECCCCC---------------------chhHHHHCCC
Confidence            566799999999999999998766543322110 112567778877532                     1345678899


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++||+++  ++ +|
T Consensus        75 ~g~PT~i~--f~-~G   86 (116)
T 3dml_A           75 TFTPTFVL--MA-GD   86 (116)
T ss_dssp             CSSSEEEE--EE-TT
T ss_pred             CCCCEEEE--EE-CC
Confidence            99999999  87 88

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.21  E-value=1.5e-11  Score=104.53  Aligned_cols=82  Identities=18%  Similarity=0.372  Sum_probs=59.6

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      ..+++.++...+.   ..+++++|+|||+||++|+.+.|.+.++++.+...+.++.++.++.+.+.              
T Consensus       361 ~~l~~~~f~~~v~---~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~--------------  423 (504)
T 2b5e_A          361 FQLVGKNHDEIVN---DPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND--------------  423 (504)
T ss_dssp             EEECTTTHHHHHH---CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCC--------------
T ss_pred             eecccccHHHhhc---cCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccc--------------
Confidence            3445555444332   25889999999999999999999999999998732235777777665321              


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                                ... |+|.++||+++  + ++|+
T Consensus       424 ----------~~~-~~v~~~Pt~~~--~-~~G~  442 (504)
T 2b5e_A          424 ----------VRG-VVIEGYPTIVL--Y-PGGK  442 (504)
T ss_dssp             ----------CSS-CCCSSSSEEEE--E-CCTT
T ss_pred             ----------ccc-CCceecCeEEE--E-eCCc
Confidence                      123 89999999999  7 5663

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.20  E-value=4.8e-11  Score=97.87  Aligned_cols=82  Identities=11%  Similarity=0.077  Sum_probs=63.3

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhh------HHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFT------PQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~------~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      ..+.|++.+++..+    .++++++|+|||+||++|+...      |.++++++.+.+.  ++.+..|+++.        
T Consensus        14 ~v~~lt~~~f~~~i----~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~--~v~~~~Vd~~~--------   79 (367)
T 3us3_A           14 RVINVNAKNYKNVF----KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK--GVGFGLVDSEK--------   79 (367)
T ss_dssp             CCEECCTTTHHHHH----HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTT--TEEEEEEETTT--------
T ss_pred             ccEECCHHHHHHHH----hhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcC--CceEEEEeCcc--------
Confidence            34567777766544    2678999999999999973332      5788888888653  58888888875        


Q ss_pred             HhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729          99 LSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                                     ...++++|+|.++||+++  +. +|
T Consensus        80 ---------------~~~l~~~~~V~~~PTl~~--f~-~G  101 (367)
T 3us3_A           80 ---------------DAAVAKKLGLTEEDSIYV--FK-ED  101 (367)
T ss_dssp             ---------------THHHHHHHTCCSTTEEEE--EE-TT
T ss_pred             ---------------cHHHHHHcCCCcCceEEE--EE-CC
Confidence                           358899999999999999  74 67

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.20  E-value=6.4e-12  Score=96.04  Aligned_cols=65  Identities=12%  Similarity=0.220  Sum_probs=54.2

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .++++||+||++||++|+.+.|.|.+++++|+    ++.++.|+++                        +..++..|++
T Consensus       119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~----~v~f~~vd~~------------------------~~~l~~~~~i  170 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP----MVKFCKIRAS------------------------NTGAGDRFSS  170 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT----TSEEEEEEHH------------------------HHTCSTTSCG
T ss_pred             CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC----CeEEEEEECC------------------------cHHHHHHCCC
Confidence            46899999999999999999999999998874    3677777765                        2345778999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++||+++  +. +|+
T Consensus       171 ~~~PTl~~--~~-~G~  183 (217)
T 2trc_P          171 DVLPTLLV--YK-GGE  183 (217)
T ss_dssp             GGCSEEEE--EE-TTE
T ss_pred             CCCCEEEE--EE-CCE
Confidence            99999999  74 783

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.10  E-value=2e-10  Score=87.76  Aligned_cols=61  Identities=15%  Similarity=0.240  Sum_probs=51.1

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+++++|+||++||++|+.+.|.+++++++++    ++.++.|+++.                       ...+++.|++
T Consensus       135 ~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~----~v~~~~vd~~~-----------------------~~~l~~~~~v  187 (229)
T 2ywm_A          135 DIPIEIWVFVTTSCGYCPSAAVMAWDFALAND----YITSKVIDASE-----------------------NQDLAEQFQV  187 (229)
T ss_dssp             CSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT----TEEEEEEEGGG-----------------------CHHHHHHTTC
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHCC----CeEEEEEECCC-----------------------CHHHHHHcCC
Confidence            45556889999999999999999999998872    48888887764                       3578999999


Q ss_pred             CCCCeeee
Q psy8729         124 HGIPSLIL  131 (190)
Q Consensus       124 ~~~P~~~l  131 (190)
                      .++|++++
T Consensus       188 ~~~Pt~~~  195 (229)
T 2ywm_A          188 VGVPKIVI  195 (229)
T ss_dssp             CSSSEEEE
T ss_pred             cccCEEEE
Confidence            99999776

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.08  E-value=3.5e-10  Score=81.78  Aligned_cols=81  Identities=15%  Similarity=0.201  Sum_probs=58.1

Q ss_pred             CCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCccc
Q psy8729          32 GTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP  108 (190)
Q Consensus        32 ~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~  108 (190)
                      ++.++.+.....++|+++|+|+++||..|+.+....   .++.+.+.+.   +.++.++++..+                
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~---fv~v~~d~~~~~----------------   89 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEE----------------   89 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHH----------------
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcC---eEEEEEecCCHh----------------
Confidence            344444433334699999999999999999996544   3344444433   677777665322                


Q ss_pred             CCchhHHHHHHHcCCCCCCeeeeeeecCC-C
Q psy8729         109 YASETRQSLASLYNVHGIPSLILLAVEAG-G  138 (190)
Q Consensus       109 ~~~~~~~~~~~~~~v~~~P~~~l~~id~~-g  138 (190)
                           ...+.+.|++.++|++++  +|++ |
T Consensus        90 -----~~~l~~~y~v~~~P~~~f--ld~~~G  113 (153)
T 2dlx_A           90 -----GQRYIQFYKLGDFPYVSI--LDPRTG  113 (153)
T ss_dssp             -----HHHHHHHHTCCSSSEEEE--ECTTTC
T ss_pred             -----HHHHHHHcCCCCCCEEEE--EeCCCC
Confidence                 567889999999999999  9998 7

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.07  E-value=3.7e-10  Score=100.68  Aligned_cols=66  Identities=21%  Similarity=0.416  Sum_probs=57.7

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+++++|.||++||++|+.+.|.+.++++++++   ++.++.|+++..                       ..+++.||+
T Consensus       454 ~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~---~v~~~~vd~~~~-----------------------~~~~~~~~v  507 (780)
T 3apo_A          454 DKEPWLVDFFAPWSPPSRALLPELRKASTLLYG---QLKVGTLDCTIH-----------------------EGLCNMYNI  507 (780)
T ss_dssp             CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred             CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CeEEEEEeCCCC-----------------------HHHHHHcCC
Confidence            678999999999999999999999999999975   388888887743                       468899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  ++ +|
T Consensus       508 ~~~Pt~~~--~~-~g  519 (780)
T 3apo_A          508 QAYPTTVV--FN-QS  519 (780)
T ss_dssp             CSSSEEEE--EE-TT
T ss_pred             CcCCeEEE--Ec-CC
Confidence            99999999  84 56

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.05  E-value=2.3e-10  Score=102.09  Aligned_cols=68  Identities=19%  Similarity=0.220  Sum_probs=58.5

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      ..+++++|+||++||++|+.+.|.+.++++++.+   ++.++.|+++.                       ...+++.|+
T Consensus       673 ~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~---~~~~~~vd~~~-----------------------~~~~~~~~~  726 (780)
T 3apo_A          673 QGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG---KVRAGKVDCQA-----------------------YPQTCQKAG  726 (780)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT---TCEEEEEETTT-----------------------CHHHHHHTT
T ss_pred             cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CceEEEEECCC-----------------------CHHHHHhcC
Confidence            3688999999999999999999999999999865   37888888765                       357889999


Q ss_pred             CCCCCeeeeeeecCCCc
Q psy8729         123 VHGIPSLILLAVEAGGR  139 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~  139 (190)
                      |.++|++++  + ++|+
T Consensus       727 v~~~Pt~~~--~-~~g~  740 (780)
T 3apo_A          727 IKAYPSVKL--Y-QYER  740 (780)
T ss_dssp             CCSSSEEEE--E-EEET
T ss_pred             CCcCCEEEE--E-cCCC
Confidence            999999999  8 5663

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.99  E-value=1.4e-09  Score=83.04  Aligned_cols=66  Identities=12%  Similarity=0.199  Sum_probs=53.0

Q ss_pred             CCcEEEEEE----EcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH
Q psy8729          44 SCQVIGLYF----SAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS  119 (190)
Q Consensus        44 ~~k~vlv~F----~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (190)
                      .+.++++.|    |++||++|+.+.|.+.++++++.+. ..+.+..|+++.                       +..+++
T Consensus        20 ~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~-----------------------~~~l~~   75 (229)
T 2ywm_A           20 KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQ-DKIKLDIYSPFT-----------------------HKEETE   75 (229)
T ss_dssp             CSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCT-TTEEEEEECTTT-----------------------CHHHHH
T ss_pred             cCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCC-CceEEEEecCcc-----------------------cHHHHH
Confidence            455555555    5899999999999999998888542 358888887764                       468999


Q ss_pred             HcCCCCCCeeeeeeec
Q psy8729         120 LYNVHGIPSLILLAVE  135 (190)
Q Consensus       120 ~~~v~~~P~~~l~~id  135 (190)
                      +|+|.++||+++  ++
T Consensus        76 ~~~v~~~Ptl~~--~~   89 (229)
T 2ywm_A           76 KYGVDRVPTIVI--EG   89 (229)
T ss_dssp             HTTCCBSSEEEE--ES
T ss_pred             HcCCCcCcEEEE--EC
Confidence            999999999999  74

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.97  E-value=2.6e-09  Score=83.07  Aligned_cols=84  Identities=17%  Similarity=0.173  Sum_probs=65.1

Q ss_pred             CcccceeccCCCccceeeeeccCCcEEEEEEE--cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC--CHHHHHH
Q psy8729          22 KKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS--AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR--SESSYQS   97 (190)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~--a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~--~~~~~~~   97 (190)
                      .......+++.+++..+    .++++++|+||  |+||+    +.|.+.++++.+.+...++.+..|+++.  +++    
T Consensus        14 ~~~~v~~Lt~~nF~~vi----~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~----   81 (248)
T 2c0g_A           14 TCTGCVDLDELSFEKTV----ERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELE----   81 (248)
T ss_dssp             -CTTCEECCTTTHHHHH----TTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCT----
T ss_pred             CCCCcEECCHHHHHHHH----hcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccc----
Confidence            34455677888877633    36789999999  99998    9999999999997611468898898875  110    


Q ss_pred             HHhCCCCCcccCCchhHHHHHHHcCCC--CCCeeeeeeec
Q psy8729          98 YLSGMPWPAIPYASETRQSLASLYNVH--GIPSLILLAVE  135 (190)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~P~~~l~~id  135 (190)
                                      +..+++.|+|.  ++||+++  +.
T Consensus        82 ----------------n~~la~~~~V~~~~~PTl~~--F~  103 (248)
T 2c0g_A           82 ----------------NKALGDRYKVDDKNFPSIFL--FK  103 (248)
T ss_dssp             ----------------THHHHHHTTCCTTSCCEEEE--ES
T ss_pred             ----------------cHHHHHHhCCCcCCCCeEEE--Ee
Confidence                            36899999999  9999999  64

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.96  E-value=5.1e-10  Score=71.71  Aligned_cols=58  Identities=19%  Similarity=0.346  Sum_probs=41.4

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.||++||++|+...+.++++.+++.     ..+..+.++.+.+                    ...+.+.||+.++|+
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~~v~~~~~--------------------~~~~~~~~gv~~vPt   58 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSK-----YTVEIVHLGTDKA--------------------RIAEAEKAGVKSVPA   58 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTT-----EEEEEEETTTCSS--------------------THHHHHHHTCCEEEE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcC-----CeEEEEEecCChh--------------------hHHHHHHcCCCcCCE
Confidence            678999999999999999987765542     3344444443210                    246678899999998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        59 ~~i   61 (80)
T 2k8s_A           59 LVI   61 (80)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.96  E-value=3e-09  Score=80.90  Aligned_cols=82  Identities=15%  Similarity=0.287  Sum_probs=54.8

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC----CH---------------HHHHHHHhCCCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR----SE---------------SSYQSYLSGMPW  104 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~----~~---------------~~~~~~~~~~~~  104 (190)
                      +++++|+.||++|||+|+.+.|.|.++.+.      ++.++.+....    ..               ..+..++.+.+.
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~------~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~  158 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL------GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSV  158 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT------TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC------CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCC
Confidence            678999999999999999999999887542      25565554321    11               123333433332


Q ss_pred             C--cccCCchhHHHHHHHcCCCCCCeeee
Q psy8729         105 P--AIPYASETRQSLASLYNVHGIPSLIL  131 (190)
Q Consensus       105 ~--~~~~~~~~~~~~~~~~~v~~~P~~~l  131 (190)
                      .  ......+.+..+.+.||+.++|++++
T Consensus       159 ~~~~~~~~v~~~~~l~~~~gV~gtPt~v~  187 (216)
T 1eej_A          159 APASCDVDIADHYALGVQLGVSGTPAVVL  187 (216)
T ss_dssp             CCCCCSCCHHHHHHHHHHHTCCSSSEEEC
T ss_pred             ChhHHHHHHHHHHHHHHHcCCCccCEEEE
Confidence            1  11223445678899999999999976

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.96  E-value=2.8e-09  Score=79.51  Aligned_cols=43  Identities=21%  Similarity=0.280  Sum_probs=37.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD   89 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d   89 (190)
                      .++++|+.||++|||+|+.+.|.+.++.+++.+   ++.+..+.++
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ---DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT---TEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC---CeEEEEEecc
Confidence            688999999999999999999999999888765   3677777664

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.94  E-value=2.5e-09  Score=81.28  Aligned_cols=67  Identities=19%  Similarity=0.303  Sum_probs=54.8

Q ss_pred             CCcEEEEEEEcC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          44 SCQVIGLYFSAH-WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        44 ~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      ++++++++||++ ||++|+.+.|.+.++++. .   .++.+..|+++..+                     ...++++||
T Consensus        21 ~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~---~~v~~~~vd~~~~~---------------------~~~~~~~~~   75 (226)
T 1a8l_A           21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T---DKLSYEIVDFDTPE---------------------GKELAKRYR   75 (226)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C---TTEEEEEEETTSHH---------------------HHHHHHHTT
T ss_pred             CCCeEEEEEecCCCCchhHHHHHHHHHHHhh-C---CceEEEEEeCCCcc---------------------cHHHHHHcC
Confidence            567888999999 999999999999998754 2   35888888877422                     368899999


Q ss_pred             CCCCCeeeeeeecCCC
Q psy8729         123 VHGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v~~~P~~~l~~id~~g  138 (190)
                      +.++|++++  +. +|
T Consensus        76 v~~~Pt~~~--~~-~g   88 (226)
T 1a8l_A           76 IDRAPATTI--TQ-DG   88 (226)
T ss_dssp             CCSSSEEEE--EE-TT
T ss_pred             CCcCceEEE--Ec-CC
Confidence            999999999  73 44

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.90  E-value=9.4e-09  Score=75.18  Aligned_cols=40  Identities=13%  Similarity=0.223  Sum_probs=32.9

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEee
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVS   87 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~   87 (190)
                      .++++|+.||.+|||+|+.+.|.+.++.+++.+    +.++...
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----v~~~~~~   60 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN----VRLVYRE   60 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----EEEEEEE
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC----EEEEEEe
Confidence            688999999999999999999999998887532    4454444

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.89  E-value=3.5e-09  Score=71.86  Aligned_cols=63  Identities=22%  Similarity=0.355  Sum_probs=49.6

Q ss_pred             EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCC
Q psy8729          47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGI  126 (190)
Q Consensus        47 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  126 (190)
                      ..++.||++||++|+...+.|.++.+++.     +.+..|++|.+                       .++..+||+. +
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-----i~~~~vDId~d-----------------------~~l~~~ygv~-V   80 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW-----FELEVINIDGN-----------------------EHLTRLYNDR-V   80 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC-----CCCEEEETTTC-----------------------HHHHHHSTTS-C
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC-----CeEEEEECCCC-----------------------HHHHHHhCCC-C
Confidence            46899999999999999999999887752     55667777753                       4677889997 9


Q ss_pred             CeeeeeeecCCCceEEE
Q psy8729         127 PSLILLAVEAGGRLDVI  143 (190)
Q Consensus       127 P~~~l~~id~~g~~~i~  143 (190)
                      |++++  + .+|  +.+
T Consensus        81 P~l~~--~-~dG--~~v   92 (107)
T 2fgx_A           81 PVLFA--V-NED--KEL   92 (107)
T ss_dssp             SEEEE--T-TTT--EEE
T ss_pred             ceEEE--E-ECC--EEE
Confidence            99987  5 367  554

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=98.89  E-value=1.2e-09  Score=76.88  Aligned_cols=66  Identities=11%  Similarity=0.116  Sum_probs=55.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .+.+++|+||++ |.+|+.+.|.+.+++++|+++   +.++.++.|.                       .+.++..||+
T Consensus        22 ~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk---~~f~~vd~d~-----------------------~~~~a~~~gi   74 (133)
T 2djk_A           22 AGIPLAYIFAET-AEERKELSDKLKPIAEAQRGV---INFGTIDAKA-----------------------FGAHAGNLNL   74 (133)
T ss_dssp             TTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT---SEEEEECTTT-----------------------TGGGTTTTTC
T ss_pred             CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe---EEEEEEchHH-----------------------hHHHHHHcCC
Confidence            677899999999 889999999999999998765   7788887764                       3457889999


Q ss_pred             CC--CCeeeeeeecC-CC
Q psy8729         124 HG--IPSLILLAVEA-GG  138 (190)
Q Consensus       124 ~~--~P~~~l~~id~-~g  138 (190)
                      .+  +|++++  ++. +|
T Consensus        75 ~~~~iPtl~i--~~~~~g   90 (133)
T 2djk_A           75 KTDKFPAFAI--QEVAKN   90 (133)
T ss_dssp             CSSSSSEEEE--ECTTTC
T ss_pred             CcccCCEEEE--EecCcC
Confidence            99  999999  864 45

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.88  E-value=4.4e-09  Score=71.72  Aligned_cols=68  Identities=19%  Similarity=0.372  Sum_probs=45.5

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      +++.+++ ||++||++|+.+.|.|.++..       .+.++.|+.+.+...                  ....+.+.|++
T Consensus        18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~-------~~~~v~v~~~~~~~~------------------~~~~l~~~~~v   71 (116)
T 2e7p_A           18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGA-------SYKVVELDELSDGSQ------------------LQSALAHWTGR   71 (116)
T ss_dssp             TSSSEEE-EECTTCHHHHHHHHHHHHHTC-------CCEEEEGGGSTTHHH------------------HHHHHHHHHSC
T ss_pred             cCCCEEE-EECCCChhHHHHHHHHHHcCC-------CeEEEEccCCCChHH------------------HHHHHHHHhCC
Confidence            3455555 999999999999999976532       244555544432110                  12567889999


Q ss_pred             CCCCeeeeeeecCCCceEEEc
Q psy8729         124 HGIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~~~i~~  144 (190)
                      .++|++ +  +  +|  +.+.
T Consensus        72 ~~~Pt~-~--~--~g--~~v~   85 (116)
T 2e7p_A           72 GTVPNV-F--I--GG--KQIG   85 (116)
T ss_dssp             CSSCEE-E--E--TT--EEEE
T ss_pred             CCcCEE-E--E--CC--EEEC
Confidence            999999 5  5  47  4443

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.84  E-value=9.9e-09  Score=79.40  Aligned_cols=82  Identities=11%  Similarity=0.141  Sum_probs=63.0

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEc--CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC--CHHHHHHHHhC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSA--HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR--SESSYQSYLSG  101 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a--~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~--~~~~~~~~~~~  101 (190)
                      .+.|++.+++..+    ..+++++|+||+  +||+    +.|.+.++++.+.+. +++.+..|++|+  ..+        
T Consensus         7 v~~Lt~~nF~~~i----~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~-~~v~~akVDvd~~g~~~--------   69 (240)
T 2qc7_A            7 ALPLDTVTFYKVI----PKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASS-DDLLVAEVGISDYGDKL--------   69 (240)
T ss_dssp             CEECCTTHHHHHG----GGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTC-TTEEEEEECCCCSSSCC--------
T ss_pred             ceECCHHHHHHHH----cCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCC-CCeEEEEEeCCcccchh--------
Confidence            3456666666533    257899999999  9999    999999999998753 468888888663  111        


Q ss_pred             CCCCcccCCchhHHHHHHHcCCC--CCCeeeeeeecCCCc
Q psy8729         102 MPWPAIPYASETRQSLASLYNVH--GIPSLILLAVEAGGR  139 (190)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~v~--~~P~~~l~~id~~g~  139 (190)
                                  +..+++.|+|.  ++||+++  + ++|+
T Consensus        70 ------------~~~l~~~~~V~~~~~PTl~~--f-~~G~   94 (240)
T 2qc7_A           70 ------------NMELSEKYKLDKESYPVFYL--F-RDGD   94 (240)
T ss_dssp             ------------SHHHHHHTTCCGGGCSEEEE--E-ETTC
T ss_pred             ------------hHHHHHHcCCCCCCCCEEEE--E-eCCC
Confidence                        46899999999  9999999  7 4563

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.81  E-value=2.6e-08  Score=73.99  Aligned_cols=42  Identities=21%  Similarity=0.368  Sum_probs=35.1

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~   88 (190)
                      .++++|+.||++|||+|+.+.|.+.++.+++.++   +.+..+.+
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPAD---VHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEEC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCC---eEEEEEeh
Confidence            6889999999999999999999999998887653   55555544

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.80  E-value=4.4e-09  Score=68.72  Aligned_cols=51  Identities=20%  Similarity=0.254  Sum_probs=39.4

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.||++||++|+...|.|.++..++        +..|++|.+                       +++.++||+. +|+
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~--------~~~vdid~~-----------------------~~l~~~~g~~-vPt   50 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA--------FFSVFIDDD-----------------------AALESAYGLR-VPV   50 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC--------EEEEECTTC-----------------------HHHHHHHTTT-CSE
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh--------eEEEECCCC-----------------------HHHHHHhCCC-cCe
Confidence            78999999999999999997643321        355677653                       4678889998 998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        51 l~~   53 (87)
T 1ttz_A           51 LRD   53 (87)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            875

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.77  E-value=1.2e-08  Score=65.58  Aligned_cols=60  Identities=17%  Similarity=0.306  Sum_probs=44.6

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC--CCCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN--VHGI  126 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~  126 (190)
                      ++.||++|||+|+...+.|.++.++++    ++.+..++++.+.+                   ....+.+.+|  +.++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~vdi~~~~~-------------------~~~~l~~~~~~~~~~v   59 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERD----DFQYQYVDIRAEGI-------------------TKEDLQQKAGKPVETV   59 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS----SCEEEEECHHHHTC-------------------CSHHHHHHTCCCSCCS
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCC----CceEEEEecccChH-------------------HHHHHHHHhCCCCcee
Confidence            678999999999999999999888753    26666666542110                   0146788888  8999


Q ss_pred             Ceeee
Q psy8729         127 PSLIL  131 (190)
Q Consensus       127 P~~~l  131 (190)
                      |++++
T Consensus        60 P~i~~   64 (85)
T 1ego_A           60 PQIFV   64 (85)
T ss_dssp             CEEEE
T ss_pred             CeEEE
Confidence            99844

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.74  E-value=3.2e-08  Score=73.52  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=35.2

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~   88 (190)
                      .++++|+.||.+|||+|..+.|.|.++.++++.   ++.+..+.+
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS---DAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT---TEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC---ceEEEEecc
Confidence            578999999999999999999999999888754   366665554

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.69  E-value=9.8e-09  Score=68.70  Aligned_cols=59  Identities=20%  Similarity=0.258  Sum_probs=43.8

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ...++++.||++||++|+...+.|.++.+       ++.+..++++...                     +..+.+.|| 
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~-------~i~~~~vdi~~~~---------------------~~el~~~~g-   64 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD-------RFILQEVDITLPE---------------------NSTWYERYK-   64 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS-------SSEEEEEETTSST---------------------THHHHHHSS-
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh-------CCeEEEEECCCcc---------------------hHHHHHHHC-
Confidence            45567889999999999999999975432       2556667776212                     367788999 


Q ss_pred             CCCCeeee
Q psy8729         124 HGIPSLIL  131 (190)
Q Consensus       124 ~~~P~~~l  131 (190)
                      .++|++++
T Consensus        65 ~~vP~l~~   72 (100)
T 1wjk_A           65 FDIPVFHL   72 (100)
T ss_dssp             SSCSEEEE
T ss_pred             CCCCEEEE
Confidence            99997644

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.69  E-value=5.5e-08  Score=83.11  Aligned_cols=61  Identities=13%  Similarity=0.105  Sum_probs=51.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      .++..++.||++||++|+...|.+++++..++    ++.+..++.+.                       .+++.++|++
T Consensus       116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~----~v~~~~vd~~~-----------------------~~~~~~~~~i  168 (521)
T 1hyu_A          116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP----RIKHTAIDGGT-----------------------FQNEITERNV  168 (521)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT----TEEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC----ceEEEEEechh-----------------------hHHHHHHhCC
Confidence            46678999999999999999999999988764    47787787764                       4678999999


Q ss_pred             CCCCeeee
Q psy8729         124 HGIPSLIL  131 (190)
Q Consensus       124 ~~~P~~~l  131 (190)
                      .++|++++
T Consensus       169 ~svPt~~i  176 (521)
T 1hyu_A          169 MGVPAVFV  176 (521)
T ss_dssp             CSSSEEEE
T ss_pred             CccCEEEE
Confidence            99999865

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.64  E-value=1.3e-07  Score=71.55  Aligned_cols=85  Identities=18%  Similarity=0.234  Sum_probs=52.7

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC--C--CH---------------HHHHHHHhCCCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD--R--SE---------------SSYQSYLSGMPW  104 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d--~--~~---------------~~~~~~~~~~~~  104 (190)
                      .++++|+.||++|||+|+.+.|.+.++.+    .+  +.+..+...  .  ..               ..+..+....+.
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~~--v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~  158 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----LG--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP  158 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHh----CC--cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCC
Confidence            57899999999999999999999987543    22  455444332  1  11               112222222211


Q ss_pred             C--cccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         105 P--AIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       105 ~--~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                      .  ......+.+..+.+.+|+.++|++++  .  +|
T Consensus       159 ~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~--nG  190 (211)
T 1t3b_A          159 KEVKTPNIVKKHYELGIQFGVRGTPSIVT--S--TG  190 (211)
T ss_dssp             SSCCCSSHHHHHHHHHHHHTCCSSCEEEC--T--TS
T ss_pred             ChHHHHHHHHHHHHHHHHcCCCcCCEEEE--e--CC
Confidence            1  01111234678889999999999888  4  57

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.60  E-value=2.8e-07  Score=71.19  Aligned_cols=89  Identities=16%  Similarity=0.228  Sum_probs=55.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC---CC-HHH-------------HHHHHhCC---C
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD---RS-ESS-------------YQSYLSGM---P  103 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d---~~-~~~-------------~~~~~~~~---~  103 (190)
                      .++++|+.||.+|||+|+++.+.+.++.+.    | ++.+..+.+.   .. ...             +..+...+   +
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~----g-~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~  170 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS----G-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLK  170 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT----T-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC----C-cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCC
Confidence            578899999999999999999999876553    2 3666555442   11 111             11111111   1


Q ss_pred             CCcc-------cCCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         104 WPAI-------PYASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       104 ~~~~-------~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                      +...       ....+.+..+.+.+|+.++|++++  .+.+|+
T Consensus       171 l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi--~~~~G~  211 (241)
T 1v58_A          171 LNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYY--MSKENT  211 (241)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEE--EETTTE
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEE--ECCCCC
Confidence            1000       001122467788999999999999  887883

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.58  E-value=1.3e-08  Score=80.68  Aligned_cols=59  Identities=15%  Similarity=0.481  Sum_probs=41.9

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      +++|||+||++|+...|.++++++++       .  .+.+|..+.                 .+.+++++++|++.++||
T Consensus       201 vV~F~A~WC~~Ck~l~p~le~lA~~l-------~--~Vd~d~~d~-----------------~~~~~~la~~~gI~~vPT  254 (291)
T 3kp9_A          201 GTMYGAYWCPHCQDQKELFGAAFDQV-------P--YVECSPNGP-----------------GTPQAQECTEAGITSYPT  254 (291)
T ss_dssp             CEEEECTTCHHHHHHHHHHGGGGGGS-------C--EEESCSSCS-----------------SSCCCHHHHTTTCCSTTE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHc-------C--EEEEeecCc-----------------hhhHHHHHHHcCCcccCe
Confidence            68999999999999999998876543       1  233331100                 011468899999999999


Q ss_pred             eeeeeecCCC
Q psy8729         129 LILLAVEAGG  138 (190)
Q Consensus       129 ~~l~~id~~g  138 (190)
                       ++  +  +|
T Consensus       255 -~~--i--~G  259 (291)
T 3kp9_A          255 -WI--I--NG  259 (291)
T ss_dssp             -EE--E--TT
T ss_pred             -EE--E--CC
Confidence             44  4  67

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.51  E-value=1.5e-06  Score=63.33  Aligned_cols=44  Identities=20%  Similarity=0.281  Sum_probs=35.9

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~   88 (190)
                      .++++|+.|+..|||+|+.+.+.+.++.++|.+.| ++.++...+
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~-~v~~~~~~~   69 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLF   69 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCC-cEEEEEEeC
Confidence            68889999999999999999999999988884332 466666554

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.51  E-value=4.6e-07  Score=67.55  Aligned_cols=43  Identities=23%  Similarity=0.382  Sum_probs=36.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD   89 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d   89 (190)
                      .++++||.||+.|||+|+.+.|.+.++.++++++   +.+..+.++
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~---v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDD---MYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTT---EEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCC---eEEEEecCC
Confidence            5789999999999999999999999998887653   666666554

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.51  E-value=2e-07  Score=75.71  Aligned_cols=68  Identities=15%  Similarity=0.250  Sum_probs=55.2

Q ss_pred             CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729          45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH  124 (190)
Q Consensus        45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  124 (190)
                      .+.++|.||++||++|+.+.|.+.+++++++++   +.++.|+++...                     ...+++.||+.
T Consensus       135 ~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~---i~f~~vd~~~~~---------------------~~~~~~~fgi~  190 (361)
T 3uem_A          135 IKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK---ILFIFIDSDHTD---------------------NQRILEFFGLK  190 (361)
T ss_dssp             CCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT---CEEEEECTTSGG---------------------GHHHHHHTTCC
T ss_pred             CCcEEEEEEeCCchhHHHHHHHHHHHHHHccCc---eEEEEecCChHH---------------------HHHHHHHcCCC
Confidence            456789999999999999999999999999865   667777665322                     47889999998


Q ss_pred             C--CCeeeeeeecCCC
Q psy8729         125 G--IPSLILLAVEAGG  138 (190)
Q Consensus       125 ~--~P~~~l~~id~~g  138 (190)
                      +  +|++.+  ++.++
T Consensus       191 ~~~~P~~~~--~~~~~  204 (361)
T 3uem_A          191 KEECPAVRL--ITLEE  204 (361)
T ss_dssp             TTTCSEEEE--EECC-
T ss_pred             ccCCccEEE--EEcCC
Confidence            7  999999  77643

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.49  E-value=2.9e-07  Score=71.12  Aligned_cols=66  Identities=9%  Similarity=0.146  Sum_probs=52.7

Q ss_pred             CcEEEEEEEcCC--ChhhhhhhHHHHHHHHHHhh-cCC-cEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH
Q psy8729          45 CQVIGLYFSAHW--CPPCKAFTPQLIETYRKLKE-DGY-QFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL  120 (190)
Q Consensus        45 ~k~vlv~F~a~w--C~~C~~~~~~l~~l~~~~~~-~g~-~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (190)
                      .++++|.||++|  |++|+.+.+.+.++++.+.. +|. .+.++.++.+.                       ...+++.
T Consensus        25 ~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~-----------------------~~~~~~~   81 (243)
T 2hls_A           25 VNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRES-----------------------DSDKFSE   81 (243)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTT-----------------------THHHHHH
T ss_pred             CCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCc-----------------------CHHHHHh
Confidence            467899999999  99999999999999887521 221 17777777664                       4678999


Q ss_pred             cCCCCCCeeeeeeec
Q psy8729         121 YNVHGIPSLILLAVE  135 (190)
Q Consensus       121 ~~v~~~P~~~l~~id  135 (190)
                      |||.++|++.+  ++
T Consensus        82 ~gv~~~Pt~~i--~~   94 (243)
T 2hls_A           82 FKVERVPTVAF--LG   94 (243)
T ss_dssp             TTCCSSSEEEE--TT
T ss_pred             cCCCcCCEEEE--EC
Confidence            99999999999  73

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.48  E-value=6.1e-07  Score=66.36  Aligned_cols=42  Identities=14%  Similarity=0.253  Sum_probs=34.2

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~   88 (190)
                      .++++|+.||.+|||+|....+.+.++.+++.+   ++.+..+.+
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK---DVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT---TEEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC---ceEEEEeCc
Confidence            467899999999999999999999998888754   366655554

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.45  E-value=6e-07  Score=56.99  Aligned_cols=54  Identities=17%  Similarity=0.325  Sum_probs=37.5

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.||++||++|+...+.|.+.       +  +.+..++++.+++                    .....+.+|+.++|+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~-------~--i~~~~vdi~~~~~--------------------~~~~~~~~g~~~vP~   53 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR-------G--FDFEMINVDRVPE--------------------AAEALRAQGFRQLPV   53 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHH--------------------HHHHHHHTTCCSSCE
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-------C--CCeEEEECCCCHH--------------------HHHHHHHhCCCccCE
Confidence            5779999999999999988642       2  4455677765442                    122233589999998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        54 ~~~   56 (81)
T 1h75_A           54 VIA   56 (81)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            843

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.27  E-value=5.9e-07  Score=59.97  Aligned_cols=61  Identities=16%  Similarity=0.279  Sum_probs=38.9

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|+++|||+|+...+.|.++...++    ++..+-|..+.+..+                  ....+.+.+|+.++|+
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~~----~~~~vdi~~~~~~~~------------------~~~~l~~~~g~~~vP~   71 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKEG----LLEFVDITATSDTNE------------------IQDYLQQLTGARTVPR   71 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTT----SEEEEEGGGSTTHHH------------------HHHHHHHHHSCCCSCE
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCCC----ccEEEEccCCCCHHH------------------HHHHHHHHhCCCCcCe
Confidence            567999999999999999975432221    245544433221110                  0245677899999999


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        72 i~~   74 (105)
T 1kte_A           72 VFI   74 (105)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.20  E-value=4.7e-06  Score=56.67  Aligned_cols=62  Identities=18%  Similarity=0.226  Sum_probs=38.4

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729          48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP  127 (190)
Q Consensus        48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P  127 (190)
                      .++.|+++|||+|+...+.|.++...+    +++.  .++++.++.                .......+.+.+|+.++|
T Consensus        20 ~vv~f~~~~Cp~C~~~~~~L~~~~~~~----~~~~--~vdi~~~~~----------------~~~~~~~l~~~~g~~~vP   77 (114)
T 2hze_A           20 KVTIFVKYTCPFCRNALDILNKFSFKR----GAYE--IVDIKEFKP----------------ENELRDYFEQITGGKTVP   77 (114)
T ss_dssp             CEEEEECTTCHHHHHHHHHHTTSCBCT----TSEE--EEEGGGSSS----------------HHHHHHHHHHHHSCCSSC
T ss_pred             CEEEEEeCCChhHHHHHHHHHHcCCCc----CceE--EEEccCCCC----------------hHHHHHHHHHHhCCCCcC
Confidence            367799999999999999885432110    0144  455443210                000134678889999999


Q ss_pred             eeee
Q psy8729         128 SLIL  131 (190)
Q Consensus       128 ~~~l  131 (190)
                      ++++
T Consensus        78 ~v~i   81 (114)
T 2hze_A           78 RIFF   81 (114)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8644

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.18  E-value=5.3e-07  Score=67.57  Aligned_cols=44  Identities=23%  Similarity=0.325  Sum_probs=36.4

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDR   90 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~   90 (190)
                      .++++||.||+.|||+|+.+.|.+   .++.++++++   +.+..+.++.
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~---v~~~~~~v~~  158 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG---VKMTKYHVNF  158 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTT---CCEEEEECSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCC---CEEEEeccCc
Confidence            467899999999999999999998   8888888653   6666666653

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.18  E-value=4e-06  Score=52.06  Aligned_cols=54  Identities=13%  Similarity=0.163  Sum_probs=37.0

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|+++||++|+...+.|.++       |  +.+..++++.+++                    .....+.+++.++|+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~--i~~~~~di~~~~~--------------------~~~~~~~~~~~~vP~   53 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-------G--LAYNTVDISLDDE--------------------ARDYVMALGYVQAPV   53 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHH--------------------HHHHHHHTTCBCCCE
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-------C--CCcEEEECCCCHH--------------------HHHHHHHcCCCccCE
Confidence            5679999999999999988643       2  3445566664432                    112224689999998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        54 l~~   56 (75)
T 1r7h_A           54 VEV   56 (75)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            755

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.13  E-value=1.7e-05  Score=57.78  Aligned_cols=42  Identities=26%  Similarity=0.540  Sum_probs=33.8

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEe
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFV   86 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i   86 (190)
                      .++++||.|+.-.||+|+++.+.+.++.+++.+.+ .+....+
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~-~~~~~~~   61 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGA-KFQKNHV   61 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTC-EEEEEEC
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCce-EEEEEec
Confidence            57789999999999999999999999999887652 3444333

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.12  E-value=5.3e-06  Score=57.87  Aligned_cols=57  Identities=16%  Similarity=0.291  Sum_probs=37.0

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCee
Q psy8729          50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSL  129 (190)
Q Consensus        50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~  129 (190)
                      +.|+++||++|+...+.|.++.       ..+  ..+.+|.+.+.                ......+.+.+++..+|++
T Consensus        30 vvf~~~~Cp~C~~~~~~L~~~~-------i~~--~~vdid~~~~~----------------~~~~~~l~~~~g~~~vP~l   84 (130)
T 2cq9_A           30 VIFSKTSCSYCTMAKKLFHDMN-------VNY--KVVELDLLEYG----------------NQFQDALYKMTGERTVPRI   84 (130)
T ss_dssp             EEEECSSCSHHHHHHHHHHHHT-------CCC--EEEETTTSTTH----------------HHHHHHHHHHHSSCCSSEE
T ss_pred             EEEEcCCChHHHHHHHHHHHcC-------CCc--EEEECcCCcCc----------------HHHHHHHHHHhCCCCcCEE
Confidence            3499999999999999987541       123  34555533100                0002357888999999988


Q ss_pred             ee
Q psy8729         130 IL  131 (190)
Q Consensus       130 ~l  131 (190)
                      ++
T Consensus        85 ~i   86 (130)
T 2cq9_A           85 FV   86 (130)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=98.11  E-value=1.2e-05  Score=50.84  Aligned_cols=55  Identities=15%  Similarity=0.306  Sum_probs=37.7

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|+++||++|+...+.|.+.       |  +.+..++++.+++                   ....+.+.+++.++|+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~--i~~~~~~i~~~~~-------------------~~~~~~~~~~~~~vP~   54 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK-------G--VSFQELPIDGNAA-------------------KREEMIKRSGRTTVPQ   54 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------T--CCCEEEECTTCSH-------------------HHHHHHHHHSSCCSCE
T ss_pred             EEEEECCCChhHHHHHHHHHHC-------C--CCcEEEECCCCHH-------------------HHHHHHHHhCCCCcCE
Confidence            5678999999999999888652       2  2334455553321                   1346677889999999


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        55 l~~   57 (82)
T 1fov_A           55 IFI   57 (82)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            854

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.11  E-value=5.9e-06  Score=58.90  Aligned_cols=57  Identities=11%  Similarity=0.256  Sum_probs=36.9

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCee
Q psy8729          50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSL  129 (190)
Q Consensus        50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~  129 (190)
                      +.|+++|||+|+...+.|.++.       ..+..+-|+.+.+..+                  ....+.+.+|+.++|++
T Consensus        52 vvf~~~~Cp~C~~~k~~L~~~~-------i~~~~vdId~~~~~~~------------------~~~~L~~~~g~~tvP~i  106 (146)
T 2ht9_A           52 VIFSKTSCSYCTMAKKLFHDMN-------VNYKVVELDLLEYGNQ------------------FQDALYKMTGERTVPRI  106 (146)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHT-------CCCEEEEGGGCTTHHH------------------HHHHHHHHHSCCCSCEE
T ss_pred             EEEECCCChhHHHHHHHHHHcC-------CCeEEEECccCcCCHH------------------HHHHHHHHhCCCCcCeE
Confidence            4499999999999999987541       2344443333211110                  02457888999999988


Q ss_pred             ee
Q psy8729         130 IL  131 (190)
Q Consensus       130 ~l  131 (190)
                      ++
T Consensus       107 fi  108 (146)
T 2ht9_A          107 FV  108 (146)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.08  E-value=1.6e-05  Score=54.48  Aligned_cols=61  Identities=11%  Similarity=0.293  Sum_probs=37.3

Q ss_pred             EEEEEcCCChhhhhh-hHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729          49 GLYFSAHWCPPCKAF-TPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP  127 (190)
Q Consensus        49 lv~F~a~wC~~C~~~-~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P  127 (190)
                      ++.|+++|||+|+.. .+.|.+...    .  .+.+..++++.+++.                ......+.+.+|+.++|
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~~----~--~i~~~~vdid~~~~~----------------~~~~~~l~~~~g~~tvP   84 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLKV----P--RSKVLVLQLNDMKEG----------------ADIQAALYEINGQRTVP   84 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSCC----C--GGGEEEEEGGGSTTH----------------HHHHHHHHHHHSCCSSC
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcCC----C--CCCeEEEECccCCCh----------------HHHHHHHHHHhCCCCcC
Confidence            556999999999998 777644220    0  123444554432100                00135678889999999


Q ss_pred             eeee
Q psy8729         128 SLIL  131 (190)
Q Consensus       128 ~~~l  131 (190)
                      ++++
T Consensus        85 ~vfi   88 (118)
T 3c1r_A           85 NIYI   88 (118)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8755

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.97  E-value=2e-05  Score=52.28  Aligned_cols=57  Identities=18%  Similarity=0.276  Sum_probs=39.0

Q ss_pred             EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHc-CCCC
Q psy8729          47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLY-NVHG  125 (190)
Q Consensus        47 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~  125 (190)
                      ..++.|+++|||+|++..+.|.++       |  +.+..++++.+++.                   ...+.+.. |...
T Consensus        16 ~~v~vy~~~~Cp~C~~ak~~L~~~-------~--i~y~~idI~~~~~~-------------------~~~l~~~~~g~~~   67 (99)
T 3qmx_A           16 AKIEIYTWSTCPFCMRALALLKRK-------G--VEFQEYCIDGDNEA-------------------REAMAARANGKRS   67 (99)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHH-------T--CCCEEEECTTCHHH-------------------HHHHHHHTTTCCC
T ss_pred             CCEEEEEcCCChhHHHHHHHHHHC-------C--CCCEEEEcCCCHHH-------------------HHHHHHHhCCCCC
Confidence            346679999999999999999653       2  23444566654321                   23455556 8999


Q ss_pred             CCeeee
Q psy8729         126 IPSLIL  131 (190)
Q Consensus       126 ~P~~~l  131 (190)
                      +|++++
T Consensus        68 vP~ifi   73 (99)
T 3qmx_A           68 LPQIFI   73 (99)
T ss_dssp             SCEEEE
T ss_pred             CCEEEE
Confidence            998866

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.97  E-value=1.8e-05  Score=51.10  Aligned_cols=53  Identities=19%  Similarity=0.345  Sum_probs=37.5

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHc-CCCCCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLY-NVHGIP  127 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~P  127 (190)
                      ++.|+++||++|+...+.|.+.       +  +.+..++++  .+                   ....+.+.+ ++.++|
T Consensus         8 v~~y~~~~C~~C~~~~~~L~~~-------~--i~~~~vdv~--~~-------------------~~~~l~~~~~~~~~vP   57 (89)
T 2klx_A            8 IILYTRPNCPYCKRARDLLDKK-------G--VKYTDIDAS--TS-------------------LRQEMVQRANGRNTFP   57 (89)
T ss_dssp             EEEESCSCCTTTHHHHHHHHHH-------T--CCEEEECSC--HH-------------------HHHHHHHHHHSSCCSC
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------C--CCcEEEECC--HH-------------------HHHHHHHHhCCCCCcC
Confidence            6778999999999999888653       1  234445554  21                   145677788 999999


Q ss_pred             eeee
Q psy8729         128 SLIL  131 (190)
Q Consensus       128 ~~~l  131 (190)
                      ++++
T Consensus        58 ~l~~   61 (89)
T 2klx_A           58 QIFI   61 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8754

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=97.95  E-value=3.7e-05  Score=49.75  Aligned_cols=55  Identities=15%  Similarity=0.302  Sum_probs=37.8

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|+++||++|+...+.|.+.       +  +.+..++++.+++.                   ...+.+.+++.++|+
T Consensus         8 v~ly~~~~C~~C~~~~~~L~~~-------~--i~~~~~di~~~~~~-------------------~~~l~~~~~~~~vP~   59 (92)
T 2khp_A            8 VIIYTRPGCPYCARAKALLARK-------G--AEFNEIDASATPEL-------------------RAEMQERSGRNTFPQ   59 (92)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEESTTSHHH-------------------HHHHHHHHTSSCCCE
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------C--CCcEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence            6778999999999998888642       2  33445566543321                   345677889999996


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        60 l~~   62 (92)
T 2khp_A           60 IFI   62 (92)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            533

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.95  E-value=4e-05  Score=54.60  Aligned_cols=83  Identities=16%  Similarity=0.336  Sum_probs=52.5

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEee--C---CCCH--------------HHHHHHHhCCCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVS--S---DRSE--------------SSYQSYLSGMPW  104 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~--~---d~~~--------------~~~~~~~~~~~~  104 (190)
                      .++++|+.|+.++||+|+++.+.+.++     +   ++.++.+.  +   ..+.              +.|..++.....
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~---~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~   84 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM-----T---DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKF   84 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC-----C---SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc-----C---ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            688999999999999999999998653     1   35555443  2   1111              123222221111


Q ss_pred             C----cccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         105 P----AIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       105 ~----~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                      .    ......+.+..+.+.+||.++|++++    .+|
T Consensus        85 ~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi----~nG  118 (147)
T 3gv1_A           85 PVGGSICDNPVAETTSLGEQFGFNGTPTLVF----PNG  118 (147)
T ss_dssp             CTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC----TTS
T ss_pred             CCccHHHHHHHHHHHHHHHHhCCCccCEEEE----ECC
Confidence            1    11122344778899999999999988    467

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=97.94  E-value=3.3e-05  Score=52.19  Aligned_cols=58  Identities=17%  Similarity=0.380  Sum_probs=36.9

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-CHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-SESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP  127 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P  127 (190)
                      ++.|+++|||+|+...+.|.++       |..+..+-|..+. +..++                  ...+.+.+|...+|
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~~------------------~~~l~~~~g~~tvP   75 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKRL-------GVQPLVVELDQLGPQGPQL------------------QKVLERLTGQHTVP   75 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEEGGGSTTHHHHH------------------HHHHHHHHSCCSSC
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCCCeEEEeecCCCChHHH------------------HHHHHHHhCCCCcC
Confidence            5669999999999999988643       2234444443321 11111                  23455667999999


Q ss_pred             eeee
Q psy8729         128 SLIL  131 (190)
Q Consensus       128 ~~~l  131 (190)
                      ++++
T Consensus        76 ~ifi   79 (113)
T 3rhb_A           76 NVFV   79 (113)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9866

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.93  E-value=4.2e-05  Score=50.87  Aligned_cols=61  Identities=15%  Similarity=0.281  Sum_probs=38.2

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729          48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP  127 (190)
Q Consensus        48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P  127 (190)
                      .++.|+++|||+|+...+.|.+.       |..+..+-|..+. .++...+               ...+.+.+|..++|
T Consensus        23 ~v~ly~~~~Cp~C~~ak~~L~~~-------~i~y~~vdI~~~~-~~~~~~~---------------~~~l~~~~g~~~vP   79 (103)
T 3nzn_A           23 KVIMYGLSTCVWCKKTKKLLTDL-------GVDFDYVYVDRLE-GKEEEEA---------------VEEVRRFNPSVSFP   79 (103)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHH-------TBCEEEEEGGGCC-HHHHHHH---------------HHHHHHHCTTCCSC
T ss_pred             eEEEEcCCCCchHHHHHHHHHHc-------CCCcEEEEeeccC-cccHHHH---------------HHHHHHhCCCCccC
Confidence            35679999999999999999653       2235555444321 1111111               12334557899999


Q ss_pred             eeee
Q psy8729         128 SLIL  131 (190)
Q Consensus       128 ~~~l  131 (190)
                      ++++
T Consensus        80 ~l~i   83 (103)
T 3nzn_A           80 TTII   83 (103)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9877

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=97.90  E-value=3.4e-05  Score=51.54  Aligned_cols=58  Identities=26%  Similarity=0.241  Sum_probs=38.4

Q ss_pred             CCcEEEEEEEc-----CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHH
Q psy8729          44 SCQVIGLYFSA-----HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLA  118 (190)
Q Consensus        44 ~~k~vlv~F~a-----~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (190)
                      .++ ++| |+.     +|||+|+...+.|.++       +  +.+..++++.+++                   ....+.
T Consensus        16 ~~~-vvv-f~~g~~~~~~C~~C~~~~~~L~~~-------~--i~~~~vdi~~~~~-------------------~~~~l~   65 (105)
T 2yan_A           16 KAS-VML-FMKGNKQEAKCGFSKQILEILNST-------G--VEYETFDILEDEE-------------------VRQGLK   65 (105)
T ss_dssp             SSS-EEE-EESBCSSSBCTTHHHHHHHHHHHH-------T--CCCEEEEGGGCHH-------------------HHHHHH
T ss_pred             cCC-EEE-EEecCCCCCCCccHHHHHHHHHHC-------C--CCeEEEECCCCHH-------------------HHHHHH
Confidence            344 444 666     9999999999988653       1  3345556654332                   124566


Q ss_pred             HHcCCCCCCeeee
Q psy8729         119 SLYNVHGIPSLIL  131 (190)
Q Consensus       119 ~~~~v~~~P~~~l  131 (190)
                      +.+|..++|++++
T Consensus        66 ~~~g~~~vP~v~i   78 (105)
T 2yan_A           66 AYSNWPTYPQLYV   78 (105)
T ss_dssp             HHHTCCSSCEEEE
T ss_pred             HHHCCCCCCeEEE
Confidence            7789999999865

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=97.86  E-value=3.5e-05  Score=49.29  Aligned_cols=58  Identities=12%  Similarity=0.177  Sum_probs=37.5

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC----
Q psy8729          48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV----  123 (190)
Q Consensus        48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----  123 (190)
                      .++.|+.+|||+|++....|.+.       |..+..+.|+.+.+...                   ..++.+.+|.    
T Consensus         5 ~v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~~vd~~~~~~~-------------------~~el~~~~g~~~~~   58 (89)
T 3msz_A            5 KVKIYTRNGCPYCVWAKQWFEEN-------NIAFDETIIDDYAQRSK-------------------FYDEMNQSGKVIFP   58 (89)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT-------TCCCEEEECCSHHHHHH-------------------HHHHHHTTTCCSSC
T ss_pred             EEEEEEcCCChhHHHHHHHHHHc-------CCCceEEEeecCCChhH-------------------HHHHHHHhCCCCCC
Confidence            36778999999999988887542       23355555544322111                   2345666676    


Q ss_pred             -CCCCeeee
Q psy8729         124 -HGIPSLIL  131 (190)
Q Consensus       124 -~~~P~~~l  131 (190)
                       .++|++++
T Consensus        59 ~~~vP~i~i   67 (89)
T 3msz_A           59 ISTVPQIFI   67 (89)
T ss_dssp             CCSSCEEEE
T ss_pred             CCccCEEEE
Confidence             89999866

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=97.84  E-value=8.5e-05  Score=51.66  Aligned_cols=61  Identities=15%  Similarity=0.265  Sum_probs=39.2

Q ss_pred             EEEEEcCCChhhhhh-hHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729          49 GLYFSAHWCPPCKAF-TPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP  127 (190)
Q Consensus        49 lv~F~a~wC~~C~~~-~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P  127 (190)
                      ++.|+.+|||+|+.. .+.|.++...    ...+..+-|..+.+..+                  ....+.+.+|...+|
T Consensus        39 Vvvy~~~~Cp~C~~a~k~~L~~~~~~----~i~~~~vdvd~~~~~~~------------------~~~~L~~~~g~~tVP   96 (129)
T 3ctg_A           39 VFVAAKTYCPYCKATLSTLFQELNVP----KSKALVLELDEMSNGSE------------------IQDALEEISGQKTVP   96 (129)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTSCCC----GGGEEEEEGGGSTTHHH------------------HHHHHHHHHSCCSSC
T ss_pred             EEEEECCCCCchHHHHHHHHHhcCcc----CCCcEEEEccccCCHHH------------------HHHHHHHHhCCCCCC
Confidence            567899999999998 7777543210    03466655554432110                  134677788999999


Q ss_pred             eeee
Q psy8729         128 SLIL  131 (190)
Q Consensus       128 ~~~l  131 (190)
                      ++++
T Consensus        97 ~vfi  100 (129)
T 3ctg_A           97 NVYI  100 (129)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9766

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.82  E-value=3.5e-05  Score=49.89  Aligned_cols=60  Identities=22%  Similarity=0.419  Sum_probs=38.4

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|+++|||+|++..+.|.++       |..+..+-|...+..+ -.               .....+.+.+++.++|+
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~-------gi~~~~~~v~~~~~~~-~~---------------~~~~~l~~~~g~~~vP~   70 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKRE-------GVDFEVIWIDKLEGEE-RK---------------KVIEKVHSISGSYSVPV   70 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHH-------TCCCEEEEGGGCCHHH-HH---------------HHHHHHHHHHSSSCSCE
T ss_pred             EEEEECCCChHHHHHHHHHHHc-------CCCcEEEEeeeCCccc-hH---------------HHHHHHHHhcCCCCcCE
Confidence            5678999999999999888653       2234454443221111 00               00256778889999998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        71 l~~   73 (92)
T 3ic4_A           71 VVK   73 (92)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=97.78  E-value=0.00011  Score=49.85  Aligned_cols=58  Identities=14%  Similarity=0.351  Sum_probs=37.0

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|+.+|||+|++..+.|.++       |..+..+-|+.+.+..++                  ...+.+..|...+|+
T Consensus        19 v~vy~~~~Cp~C~~ak~~L~~~-------~i~~~~~dvd~~~~~~~~------------------~~~l~~~~g~~tvP~   73 (114)
T 3h8q_A           19 VVIFSKSYCPHSTRVKELFSSL-------GVECNVLELDQVDDGARV------------------QEVLSEITNQKTVPN   73 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTSTTHHHH------------------HHHHHHHHSCCSSCE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHc-------CCCcEEEEecCCCChHHH------------------HHHHHHHhCCCccCE
Confidence            3459999999999999888653       223444444332222211                  234556678899999


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        74 vfi   76 (114)
T 3h8q_A           74 IFV   76 (114)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            877

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.66  E-value=9.2e-05  Score=48.46  Aligned_cols=58  Identities=16%  Similarity=0.345  Sum_probs=38.7

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH-cCCCCCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL-YNVHGIP  127 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~P  127 (190)
                      |+.|+.+|||+|++....|.+       .|  +.+-.++++.+++.                   ...+.+. -|...+|
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~-------~g--i~y~~idi~~d~~~-------------------~~~~~~~~~G~~tVP   57 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTA-------NR--IAYDEVDIEHNRAA-------------------AEFVGSVNGGNRTVP   57 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHH-------TT--CCCEEEETTTCHHH-------------------HHHHHHHSSSSSCSC
T ss_pred             EEEEcCCCCHhHHHHHHHHHh-------cC--CceEEEEcCCCHHH-------------------HHHHHHHcCCCCEeC
Confidence            567889999999999888853       23  44455666655432                   2233333 3788999


Q ss_pred             eeeeeeecCCC
Q psy8729         128 SLILLAVEAGG  138 (190)
Q Consensus       128 ~~~l~~id~~g  138 (190)
                      ++++    .||
T Consensus        58 ~I~i----~Dg   64 (92)
T 2lqo_A           58 TVKF----ADG   64 (92)
T ss_dssp             EEEE----TTS
T ss_pred             EEEE----eCC
Confidence            9887    467

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=97.60  E-value=1.7e-05  Score=58.73  Aligned_cols=42  Identities=19%  Similarity=0.359  Sum_probs=31.8

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~   88 (190)
                      ..+++||.||+.|||+|+.+.|.+   .++.+++.++   +.++.+.+
T Consensus        13 ~~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~---v~~~~~~~   57 (189)
T 3l9v_A           13 VDAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQG---SRMVKYHV   57 (189)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTT---CCEEEEEC
T ss_pred             CCCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCC---CEEEEEec
Confidence            456889999999999999999986   5777766543   44555544

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=97.42  E-value=8.4e-05  Score=54.79  Aligned_cols=30  Identities=13%  Similarity=0.013  Sum_probs=28.4

Q ss_pred             CcEEEEEEEcCCChhhhhhhHHHHHHHHHH
Q psy8729          45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKL   74 (190)
Q Consensus        45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~   74 (190)
                      ++++||.||+.|||+|+.+.|.+.++.+++
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~   51 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA   51 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh
Confidence            678999999999999999999999999988

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.38  E-value=0.00036  Score=46.79  Aligned_cols=58  Identities=24%  Similarity=0.226  Sum_probs=37.7

Q ss_pred             CCcEEEEEEEc-----CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHH
Q psy8729          44 SCQVIGLYFSA-----HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLA  118 (190)
Q Consensus        44 ~~k~vlv~F~a-----~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (190)
                      .++ ++ .|+.     +|||+|+...+.|.+.       |  +.+..++++.+++.                   ...+.
T Consensus        14 ~~~-vv-vy~~g~~~~~~Cp~C~~ak~~L~~~-------~--i~~~~vdi~~~~~~-------------------~~~l~   63 (109)
T 1wik_A           14 KAS-VM-LFMKGNKQEAKCGFSKQILEILNST-------G--VEYETFDILEDEEV-------------------RQGLK   63 (109)
T ss_dssp             TSS-EE-EEESSTTTCCCSSTHHHHHHHHHHT-------C--SCEEEEESSSCHHH-------------------HHHHH
T ss_pred             cCC-EE-EEEecCCCCCCCchHHHHHHHHHHc-------C--CCeEEEECCCCHHH-------------------HHHHH
Confidence            454 43 4555     9999999999888542       2  33455566644321                   34566


Q ss_pred             HHcCCCCCCeeee
Q psy8729         119 SLYNVHGIPSLIL  131 (190)
Q Consensus       119 ~~~~v~~~P~~~l  131 (190)
                      +.+|...+|.+++
T Consensus        64 ~~~g~~~vP~ifi   76 (109)
T 1wik_A           64 TFSNWPTYPQLYV   76 (109)
T ss_dssp             HHHSCCSSCEEEC
T ss_pred             HHhCCCCCCEEEE
Confidence            6778899998655

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.00062  Score=47.15  Aligned_cols=61  Identities=16%  Similarity=0.187  Sum_probs=39.1

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      |+.|..+|||+|++....|.+.   + ..+..+..+-|+.+.+.++++                  ..+.+..|...+|.
T Consensus        16 Vvvysk~~Cp~C~~ak~lL~~~---~-~~~v~~~~idid~~~d~~~~~------------------~~l~~~~G~~tVP~   73 (127)
T 3l4n_A           16 IIIFSKSTCSYSKGMKELLENE---Y-QFIPNYYIIELDKHGHGEELQ------------------EYIKLVTGRGTVPN   73 (127)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH---E-EEESCCEEEEGGGSTTHHHHH------------------HHHHHHHSCCSSCE
T ss_pred             EEEEEcCCCccHHHHHHHHHHh---c-ccCCCcEEEEecCCCCHHHHH------------------HHHHHHcCCCCcce
Confidence            5778899999999999888652   1 112335565555544333222                  23344568889999


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        74 IfI   76 (127)
T 3l4n_A           74 LLV   76 (127)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            987

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=97.30  E-value=0.001  Score=50.37  Aligned_cols=67  Identities=15%  Similarity=0.227  Sum_probs=51.5

Q ss_pred             cEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC-
Q psy8729          46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH-  124 (190)
Q Consensus        46 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-  124 (190)
                      +..++.|..+||.+|....+.+.+++++++++   +.++.++.+...                     ...+.+.||+. 
T Consensus       132 ~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~---i~F~~vd~~~~~---------------------~~~~l~~fgl~~  187 (227)
T 4f9z_D          132 QIHLLLIMNKASPEYEENMHRYQKAAKLFQGK---ILFILVDSGMKE---------------------NGKVISFFKLKE  187 (227)
T ss_dssp             CEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT---CEEEEEETTSGG---------------------GHHHHHHTTCCG
T ss_pred             ceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC---EEEEEeCCccHh---------------------HHHHHHHcCCCc
Confidence            34556677889999999999999999999865   677777765322                     34567889998 


Q ss_pred             -CCCeeeeeeecCCC
Q psy8729         125 -GIPSLILLAVEAGG  138 (190)
Q Consensus       125 -~~P~~~l~~id~~g  138 (190)
                       .+|++.+  ++..+
T Consensus       188 ~~~P~~~i--~~~~~  200 (227)
T 4f9z_D          188 SQLPALAI--YQTLD  200 (227)
T ss_dssp             GGCSEEEE--EESSS
T ss_pred             ccCCEEEE--EECCC
Confidence             7999999  77544

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.30  E-value=0.00087  Score=49.17  Aligned_cols=92  Identities=8%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             CCCccceeeee----ccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHH--HHHHHHhC
Q psy8729          31 EGTVTTKVLSY----IESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSES--SYQSYLSG  101 (190)
Q Consensus        31 ~~~~~~~~~~~----~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~--~~~~~~~~  101 (190)
                      .+++...+...    ..++|+++|+++++||+.|..+...+   .++.+-+++   ++.+++.+++.++.  ....++.+
T Consensus        37 ~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~---nfV~w~~dv~~~e~~~~~~~~~~~  113 (178)
T 2ec4_A           37 IGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ---NFITWAWDLTKDSNRARFLTMCNR  113 (178)
T ss_dssp             CSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH---TEEEEEEECCSHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc---CEEEEEEeCCCchhhhhhhhhhhh
Confidence            34454454444    45899999999999999999887533   334444443   37777777664331  11112111


Q ss_pred             -CCCCcccCCchhHHHH---HHHcCCCCCCeeeeeeecCCC
Q psy8729         102 -MPWPAIPYASETRQSL---ASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       102 -~~~~~~~~~~~~~~~~---~~~~~v~~~P~~~l~~id~~g  138 (190)
                       .+           ..+   .+.|++.++|++.+  |++.+
T Consensus       114 ~~g-----------~~~a~~~~~~~~~~~P~l~i--i~~~~  141 (178)
T 2ec4_A          114 HFG-----------SVVAQTIRTQKTDQFPLFLI--IMGKR  141 (178)
T ss_dssp             HTC-----------HHHHHHHHHSCSTTCSEEEE--ECCCS
T ss_pred             hhH-----------HHHHHHHhhcCCCCCCeEEE--EEcCC
Confidence             11           123   34489999999999  98764

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.10  E-value=0.00026  Score=52.44  Aligned_cols=44  Identities=25%  Similarity=0.361  Sum_probs=33.8

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~   88 (190)
                      .++++||.|+..|||+|+++.|.+   .++.+++.++ ..+..+-+..
T Consensus        20 ~~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~-v~~~~~~~~~   66 (191)
T 3l9s_A           20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEG-TKMTKYHVEF   66 (191)
T ss_dssp             CSSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTT-CCEEEEECSS
T ss_pred             CCCCeEEEEECCCChhHHHhChhccchHHHHHhCCCC-cEEEEEeccc
Confidence            457899999999999999999987   6888888754 3444444443

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=97.01  E-value=0.0022  Score=40.85  Aligned_cols=57  Identities=16%  Similarity=0.249  Sum_probs=35.9

Q ss_pred             EEEEEcC----CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC---CCHHHHHHHHhCCCCCcccCCchhHHHHHHHc
Q psy8729          49 GLYFSAH----WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD---RSESSYQSYLSGMPWPAIPYASETRQSLASLY  121 (190)
Q Consensus        49 lv~F~a~----wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (190)
                      ++.|+.+    |||+|++....|++       .|..+..+-|...   .+++                   ....+.+..
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~-------~gi~y~~idI~~~~~~~~~~-------------------~~~~l~~~~   55 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTV-------KKQPFEFINIMPEKGVFDDE-------------------KIAELLTKL   55 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHH-------TTCCEEEEESCSBTTBCCHH-------------------HHHHHHHHH
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHH-------cCCCEEEEEeeccccccCHH-------------------HHHHHHHHh
Confidence            4567889    99999998888854       2333444444310   2221                   134566777


Q ss_pred             CCC-----CCCeeee
Q psy8729         122 NVH-----GIPSLIL  131 (190)
Q Consensus       122 ~v~-----~~P~~~l  131 (190)
                      |..     .+|.+++
T Consensus        56 g~~~~~~~tvP~v~i   70 (87)
T 1aba_A           56 GRDTQIGLTMPQVFA   70 (87)
T ss_dssp             TCSCCTTCCSCEEEC
T ss_pred             CCCCCCCCccCEEEE
Confidence            887     8998766

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=96.99  E-value=0.004  Score=48.64  Aligned_cols=40  Identities=18%  Similarity=0.304  Sum_probs=31.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~   88 (190)
                      .++.+++.|+.+.||+|+++.+.+.++.+.     ..+.++.+.+
T Consensus       146 ~gk~~I~vFtDp~CPYCkkl~~~l~~~l~~-----~~Vr~i~~Pi  185 (273)
T 3tdg_A          146 NKDKILYIVSDPMCPHCQKELTKLRDHLKE-----NTVRMVVVGW  185 (273)
T ss_dssp             GTTCEEEEEECTTCHHHHHHHHTHHHHHHH-----CEEEEEECCC
T ss_pred             CCCeEEEEEECcCChhHHHHHHHHHHHhhC-----CcEEEEEeec
Confidence            577899999999999999999999866553     2466666554

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=96.76  E-value=0.0034  Score=42.22  Aligned_cols=54  Identities=22%  Similarity=0.245  Sum_probs=34.5

Q ss_pred             EEEEc-----CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729          50 LYFSA-----HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH  124 (190)
Q Consensus        50 v~F~a-----~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  124 (190)
                      |.|..     +|||+|++....|.+.       |..+.  .++++.+++ +                  ...+.+..|..
T Consensus        19 vlf~kg~~~~~~Cp~C~~ak~~L~~~-------gi~y~--~~di~~d~~-~------------------~~~l~~~~g~~   70 (111)
T 3zyw_A           19 MLFMKGTPQEPRCGFSKQMVEILHKH-------NIQFS--SFDIFSDEE-V------------------RQGLKAYSSWP   70 (111)
T ss_dssp             EEEESBCSSSBSSHHHHHHHHHHHHT-------TCCCE--EEEGGGCHH-H------------------HHHHHHHHTCC
T ss_pred             EEEEecCCCCCcchhHHHHHHHHHHc-------CCCeE--EEECcCCHH-H------------------HHHHHHHHCCC
Confidence            45667     9999999999888542       22333  445443332 1                  23445555888


Q ss_pred             CCCeeee
Q psy8729         125 GIPSLIL  131 (190)
Q Consensus       125 ~~P~~~l  131 (190)
                      .+|.+++
T Consensus        71 tvP~ifi   77 (111)
T 3zyw_A           71 TYPQLYV   77 (111)
T ss_dssp             SSCEEEE
T ss_pred             CCCEEEE
Confidence            9999877

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=96.73  E-value=0.0035  Score=43.80  Aligned_cols=59  Identities=20%  Similarity=0.228  Sum_probs=37.0

Q ss_pred             CCcEEEEEEEc----CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH
Q psy8729          44 SCQVIGLYFSA----HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS  119 (190)
Q Consensus        44 ~~k~vlv~F~a----~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (190)
                      .++ ++|+.++    +|||+|++....|.++       |  +.+..++++.+++                   ....+.+
T Consensus        34 ~~~-Vvvy~ks~~~~~~Cp~C~~ak~~L~~~-------g--v~y~~vdI~~d~~-------------------~~~~L~~   84 (135)
T 2wci_A           34 ENP-ILLYMKGSPKLPSCGFSAQAVQALAAC-------G--ERFAYVDILQNPD-------------------IRAELPK   84 (135)
T ss_dssp             HCS-EEEEESBCSSSBSSHHHHHHHHHHHTT-------C--SCCEEEEGGGCHH-------------------HHHHHHH
T ss_pred             cCC-EEEEEEecCCCCCCccHHHHHHHHHHc-------C--CceEEEECCCCHH-------------------HHHHHHH
Confidence            444 4454444    8999999998888542       3  2344455553332                   1345566


Q ss_pred             HcCCCCCCeeee
Q psy8729         120 LYNVHGIPSLIL  131 (190)
Q Consensus       120 ~~~v~~~P~~~l  131 (190)
                      ..|...+|.+++
T Consensus        85 ~~G~~tvP~VfI   96 (135)
T 2wci_A           85 YANWPTFPQLWV   96 (135)
T ss_dssp             HHTCCSSCEEEE
T ss_pred             HHCCCCcCEEEE
Confidence            678889998876

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=96.69  E-value=0.0022  Score=46.88  Aligned_cols=42  Identities=12%  Similarity=0.116  Sum_probs=32.8

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHH-HHHHHHHhhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQL-IETYRKLKEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l-~~l~~~~~~~g~~~~ii~i~~   88 (190)
                      .+++++|.||..+||+|....+.+ .++.+++...   +.+..+.+
T Consensus        16 ~~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~~---v~~~~~~l   58 (195)
T 3c7m_A           16 NADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDI---VAFTPFHL   58 (195)
T ss_dssp             SCTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTTT---CEEEEEEC
T ss_pred             CCCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCCc---eEEEEEec
Confidence            356688899999999999999999 9888887643   45554443

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=96.62  E-value=0.0051  Score=39.70  Aligned_cols=55  Identities=13%  Similarity=0.094  Sum_probs=34.3

Q ss_pred             EEEEEcCCChhh------hhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          49 GLYFSAHWCPPC------KAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        49 lv~F~a~wC~~C------~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      ++.|+.+|||.|      ++....|.       +.|  +.+..++++.+++.                   ...+.+.+|
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~-------~~~--i~~~~~di~~~~~~-------------------~~~l~~~~g   55 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILD-------GKR--IQYQLVDISQDNAL-------------------RDEMRTLAG   55 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHH-------HTT--CCCEEEETTSCHHH-------------------HHHHHHHTT
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHH-------HCC--CceEEEECCCCHHH-------------------HHHHHHHhC
Confidence            566789999999      56555553       223  33445555544321                   245566677


Q ss_pred             --CCCCCeeee
Q psy8729         123 --VHGIPSLIL  131 (190)
Q Consensus       123 --v~~~P~~~l  131 (190)
                        ...+|.+++
T Consensus        56 ~~~~~vP~ifi   66 (93)
T 1t1v_A           56 NPKATPPQIVN   66 (93)
T ss_dssp             CTTCCSCEEEE
T ss_pred             CCCCCCCEEEE
Confidence              678998877

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.45  E-value=0.0079  Score=40.32  Aligned_cols=35  Identities=20%  Similarity=-0.054  Sum_probs=21.9

Q ss_pred             EEEEEcCCChhhh------hhhHHHHHHHHHHhhcCCcEEEEEeeCCCCH
Q psy8729          49 GLYFSAHWCPPCK------AFTPQLIETYRKLKEDGYQFEIIFVSSDRSE   92 (190)
Q Consensus        49 lv~F~a~wC~~C~------~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~   92 (190)
                      |+.|+.+||+.|+      +....|.    .   .|  +.+..++++.++
T Consensus        10 V~vy~~~~C~~C~~~~~~~~ak~~L~----~---~g--i~y~~vdI~~~~   50 (111)
T 2ct6_A           10 IRVFIASSSGFVAIKKKQQDVVRFLE----A---NK--IEFEEVDITMSE   50 (111)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHH----H---TT--CCEEEEETTTCH
T ss_pred             EEEEEcCCCCCcccchhHHHHHHHHH----H---cC--CCEEEEECCCCH
Confidence            5678899999999      4554443    2   23  345556666543

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=96.44  E-value=0.0058  Score=45.43  Aligned_cols=44  Identities=23%  Similarity=0.513  Sum_probs=34.2

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHH-HHHHHHHhhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQL-IETYRKLKEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l-~~l~~~~~~~g~~~~ii~i~~   88 (190)
                      .++++|+.|+...||+|+++.+.+ ..+.++|.+.| ++.++...+
T Consensus        28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g-~v~~~~~~~   72 (202)
T 3gha_A           28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKG-DVKFSFVNV   72 (202)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTT-SEEEEEEEC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCC-eEEEEEEec
Confidence            688999999999999999999887 55666775442 566766654

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=96.36  E-value=0.009  Score=39.87  Aligned_cols=49  Identities=24%  Similarity=0.231  Sum_probs=31.3

Q ss_pred             CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeee
Q psy8729          55 HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL  131 (190)
Q Consensus        55 ~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l  131 (190)
                      +|||+|++....|.+.       |..+.  .++++.+++.                   ...+.+..|...+|.+++
T Consensus        31 p~Cp~C~~ak~~L~~~-------gi~~~--~~dI~~~~~~-------------------~~~l~~~~g~~tvP~ifi   79 (109)
T 3ipz_A           31 PMCGFSNTVVQILKNL-------NVPFE--DVNILENEML-------------------RQGLKEYSNWPTFPQLYI   79 (109)
T ss_dssp             BSSHHHHHHHHHHHHT-------TCCCE--EEEGGGCHHH-------------------HHHHHHHHTCSSSCEEEE
T ss_pred             CCChhHHHHHHHHHHc-------CCCcE--EEECCCCHHH-------------------HHHHHHHHCCCCCCeEEE
Confidence            4999999999888642       22333  4444433321                   345555668889998877

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.018  Score=39.20  Aligned_cols=52  Identities=15%  Similarity=0.098  Sum_probs=31.8

Q ss_pred             CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeee
Q psy8729          55 HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL  131 (190)
Q Consensus        55 ~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l  131 (190)
                      ||||+|++....|.+..-.+.    .+.  .++++.+.+.                   ...+.+..|...+|.+++
T Consensus        29 p~Cp~C~~ak~lL~~~gv~~~----~~~--~~dv~~~~~~-------------------~~~l~~~sg~~tvP~vfI   80 (121)
T 3gx8_A           29 PKCGFSRATIGLLGNQGVDPA----KFA--AYNVLEDPEL-------------------REGIKEFSEWPTIPQLYV   80 (121)
T ss_dssp             BCTTHHHHHHHHHHHHTBCGG----GEE--EEECTTCHHH-------------------HHHHHHHHTCCSSCEEEE
T ss_pred             CCCccHHHHHHHHHHcCCCcc----eEE--EEEecCCHHH-------------------HHHHHHHhCCCCCCeEEE
Confidence            499999999998865311100    133  3444433321                   345555668889999887

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=96.18  E-value=0.019  Score=43.46  Aligned_cols=56  Identities=18%  Similarity=0.294  Sum_probs=38.0

Q ss_pred             EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCC
Q psy8729          47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGI  126 (190)
Q Consensus        47 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  126 (190)
                      ..++.|+.+|||+|++....|.+.       |..+..  ++++.+.+                    ...+.+.+|...+
T Consensus       170 ~~i~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~--~~i~~~~~--------------------~~~l~~~~g~~~v  220 (241)
T 1nm3_A          170 ESISIFTKPGCPFCAKAKQLLHDK-------GLSFEE--IILGHDAT--------------------IVSVRAVSGRTTV  220 (241)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHH-------TCCCEE--EETTTTCC--------------------HHHHHHHTCCSSS
T ss_pred             ceEEEEECCCChHHHHHHHHHHHc-------CCceEE--EECCCchH--------------------HHHHHHHhCCCCc
Confidence            346778899999999998888642       223444  44442211                    2567778899999


Q ss_pred             Ceeee
Q psy8729         127 PSLIL  131 (190)
Q Consensus       127 P~~~l  131 (190)
                      |.+++
T Consensus       221 P~~~~  225 (241)
T 1nm3_A          221 PQVFI  225 (241)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            98766

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=96.12  E-value=0.012  Score=44.59  Aligned_cols=44  Identities=16%  Similarity=0.328  Sum_probs=34.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHH-HHHHHHHhhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQL-IETYRKLKEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l-~~l~~~~~~~g~~~~ii~i~~   88 (190)
                      .++++|+.|+...||+|+++.+.+ .++.++|.+.| ++.++...+
T Consensus        38 ~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g-~V~~v~~~~   82 (226)
T 3f4s_A           38 KAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTG-KMLYIFRHF   82 (226)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTT-SEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCC-eEEEEEEeC
Confidence            688899999999999999999864 77888885442 466665544

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=96.07  E-value=0.018  Score=42.78  Aligned_cols=82  Identities=20%  Similarity=0.314  Sum_probs=59.3

Q ss_pred             eccCCcEEEEEEE-cCCChhhhh-hhHHHHHHHHHH-hhcCCcEEEEEeeCCCCHHHHHHHHhCCCC---CcccCCchhH
Q psy8729          41 YIESCQVIGLYFS-AHWCPPCKA-FTPQLIETYRKL-KEDGYQFEIIFVSSDRSESSYQSYLSGMPW---PAIPYASETR  114 (190)
Q Consensus        41 ~~~~~k~vlv~F~-a~wC~~C~~-~~~~l~~l~~~~-~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~---~~~~~~~~~~  114 (190)
                      .+.++|.+||.+. +.+.|.|.. .+|.+.+.+.++ +.+|.+ +|+.++++ +...++.|.+.++.   ..+++..|.+
T Consensus        65 ~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~kGvd-~I~ciSVN-D~FVm~AW~k~~~~~~~~~i~~laD~~  142 (199)
T 4h86_A           65 LISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVD-QVIVVTVD-NPFANQAWAKSLGVKDTTHIKFASDPG  142 (199)
T ss_dssp             HHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHSCCC-EEEEEESS-CHHHHHHHHHHTTCCCCSSEEEEECGG
T ss_pred             HhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhcCCc-EEEEEEcC-CHHHHHHHHHHhcccccccccccCCcc
Confidence            3335776655554 778899976 688887777664 556522 57788887 57778888876653   3578889999


Q ss_pred             HHHHHHcCCC
Q psy8729         115 QSLASLYNVH  124 (190)
Q Consensus       115 ~~~~~~~~v~  124 (190)
                      .++.+.+|+.
T Consensus       143 ~eftkalGl~  152 (199)
T 4h86_A          143 CAFTKSIGFE  152 (199)
T ss_dssp             GHHHHHTTCE
T ss_pred             hHHHHhcCce
Confidence            9999999974

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=95.73  E-value=0.018  Score=42.09  Aligned_cols=42  Identities=10%  Similarity=0.001  Sum_probs=33.5

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHH-hhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKL-KEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~-~~~g~~~~ii~i~~   88 (190)
                      .++++|+.|....||+|++..+.+..+.+++ .+   ++.++.-..
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g---~v~~v~r~~   55 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGED---NVTVRIRLQ   55 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTT---TEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCC---CEEEEEEEc
Confidence            6788999999999999999999998877776 33   466665543

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=95.70  E-value=0.014  Score=42.36  Aligned_cols=42  Identities=17%  Similarity=0.376  Sum_probs=31.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHH-HHHHHHHhhcCCcEEEEEe
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQL-IETYRKLKEDGYQFEIIFV   86 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l-~~l~~~~~~~g~~~~ii~i   86 (190)
                      .++++|+.|+...||+|....+.+ ..+.++|.+.| ++.++..
T Consensus        10 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~-~v~~~~~   52 (186)
T 3bci_A           10 NGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNH-KVEYQFV   52 (186)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT-SSEEEEE
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCC-eEEEEEE
Confidence            567789999999999999999998 56777776532 3444443

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=95.67  E-value=0.044  Score=42.69  Aligned_cols=72  Identities=18%  Similarity=0.268  Sum_probs=43.0

Q ss_pred             cEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCC----chhHHHHHHHc
Q psy8729          46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYA----SETRQSLASLY  121 (190)
Q Consensus        46 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  121 (190)
                      ++.|..|+.++||+|......|.++...+.     +..+.+.++.-+        ..+|.- |+.    .+.+..+.+.+
T Consensus        43 ~~~VelyTs~gCp~C~~Ak~lL~~~~~~~~-----vi~l~~~v~~~d--------ylgw~D-~~a~~~~~~r~~~~~~~~  108 (270)
T 2axo_A           43 KGVVELFTSQGCASCPPADEALRKMIQKGD-----VVGLSYHVDYWN--------YLGWTD-SLASKENTERQYGYMRAL  108 (270)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHHTS-----SEEEEEECSTTC--------SSSSCC-TTCCHHHHHHHHHHHHHT
T ss_pred             CcEEEEEeCCCCCChHHHHHHHHHhhccCC-----eeeEEEEEEEec--------cccccc-chhhhhhhHHHHHHHHHh
Confidence            356778999999999999999988766531     322334432100        011100 111    11134577788


Q ss_pred             CCCCC--Ceeee
Q psy8729         122 NVHGI--PSLIL  131 (190)
Q Consensus       122 ~v~~~--P~~~l  131 (190)
                      |...+  |.+++
T Consensus       109 G~~tVyTPqI~I  120 (270)
T 2axo_A          109 GRNGVYTPQAIL  120 (270)
T ss_dssp             TCSCCCSSEEEE
T ss_pred             CCCcccCCEEEE
Confidence            99887  99777

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=95.57  E-value=0.032  Score=41.57  Aligned_cols=44  Identities=14%  Similarity=0.163  Sum_probs=34.1

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHH-HHhhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYR-KLKEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~-~~~~~g~~~~ii~i~~   88 (190)
                      .++++||.|....||+|+++.+.+....+ +|-+. .++.++.-.+
T Consensus        14 ~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~-g~v~~v~r~~   58 (205)
T 3gmf_A           14 AAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQP-GKGAIEVRNF   58 (205)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TSEEEEEEEC
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhccC-CeEEEEEEeC
Confidence            68899999999999999999988865545 77444 3577776654

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=95.03  E-value=0.065  Score=36.60  Aligned_cols=58  Identities=16%  Similarity=0.192  Sum_probs=42.8

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      ...+++||-||.+||.+|   .+.+.++++.+ ++   +.+... .                         +..+.+.|+
T Consensus        37 ~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d---~~F~~t-~-------------------------~~~v~~~~~   83 (124)
T 2l4c_A           37 AATEVAVIGFFQDLEIPA---VPILHSMVQKF-PG---VSFGIS-T-------------------------DSEVLTHYN   83 (124)
T ss_dssp             HTSSEEEEEECSCTTSTH---HHHHHHHHHHC-TT---SEEEEE-C-------------------------CHHHHHHTT
T ss_pred             hcCCCEEEEEECCCCChh---HHHHHHHHHhC-CC---ceEEEE-C-------------------------hHHHHHHcC
Confidence            367889999999999998   56677777777 43   444322 2                         256888999


Q ss_pred             CCCCCeeeeeeecC
Q psy8729         123 VHGIPSLILLAVEA  136 (190)
Q Consensus       123 v~~~P~~~l~~id~  136 (190)
                      +. .|++++  +.+
T Consensus        84 v~-~~~vvl--fkk   94 (124)
T 2l4c_A           84 IT-GNTICL--FRL   94 (124)
T ss_dssp             CC-SSCEEE--EET
T ss_pred             CC-CCeEEE--EEc
Confidence            98 799999  655

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=94.81  E-value=0.045  Score=41.42  Aligned_cols=35  Identities=17%  Similarity=0.300  Sum_probs=26.7

Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEE
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~  143 (190)
                      +....+.+..+.++|||.++|++++  ++++|+....
T Consensus       187 v~~~~~~~~~l~~~f~v~~~Pslvl--~~~~g~~~~~  221 (244)
T 3q6o_A          187 VRRVLNTEANVVRKFGVTDFPSCYL--LFRNGSVSRV  221 (244)
T ss_dssp             EEEEETTCHHHHHHHTCCCSSEEEE--EETTSCEEEC
T ss_pred             EEEEeCchHHHHHHcCCCCCCeEEE--EeCCCCeEee
Confidence            3333344579999999999999999  9999955433

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=94.73  E-value=0.08  Score=42.35  Aligned_cols=65  Identities=15%  Similarity=0.223  Sum_probs=48.6

Q ss_pred             cEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHH----HHc
Q psy8729          46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLA----SLY  121 (190)
Q Consensus        46 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  121 (190)
                      +..++.|...||+.|....+.+.++++++++. .++.++.++.+..                       ..++    +.|
T Consensus       246 ~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~-~~~~f~~id~~~~-----------------------~~~~~~~~~~~  301 (350)
T 1sji_A          246 GIHIVAFAERSDPDGYEFLEILKQVARDNTDN-PDLSIVWIDPDDF-----------------------PLLVAYWEKTF  301 (350)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHHHHHHHGGGC-SSCCEEEECGGGC-----------------------HHHHHHHHHHC
T ss_pred             CcEEEEEEcCCCccHHHHHHHHHHHHHHhCCC-CceEEEEECchhh-----------------------HHHHHHHHhhc
Confidence            44456688999999999999999999999851 2466777665421                       2344    789


Q ss_pred             CCC-CCCeeeeeeecC
Q psy8729         122 NVH-GIPSLILLAVEA  136 (190)
Q Consensus       122 ~v~-~~P~~~l~~id~  136 (190)
                      |+. .+|++.+  ++.
T Consensus       302 gi~~~~P~~~i--~~~  315 (350)
T 1sji_A          302 KIDLFKPQIGV--VNV  315 (350)
T ss_dssp             CSCTTSCEEEE--EES
T ss_pred             CCCccCCcEEE--Eec
Confidence            987 5899999  876

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=94.69  E-value=0.1  Score=35.53  Aligned_cols=13  Identities=8%  Similarity=-0.192  Sum_probs=10.5

Q ss_pred             EEEEEcCCChhhh
Q psy8729          49 GLYFSAHWCPPCK   61 (190)
Q Consensus        49 lv~F~a~wC~~C~   61 (190)
                      |+.|.+++|+.|.
T Consensus         2 V~vYtt~~c~~c~   14 (121)
T 1u6t_A            2 IRVYIASSSGSTA   14 (121)
T ss_dssp             EEEEECTTCSCHH
T ss_pred             EEEEecCCCCCcc
Confidence            5667799999994

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=93.74  E-value=0.082  Score=42.85  Aligned_cols=61  Identities=10%  Similarity=0.161  Sum_probs=34.3

Q ss_pred             EEEEEcCCChhhhhhhH-HHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729          49 GLYFSAHWCPPCKAFTP-QLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP  127 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~-~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P  127 (190)
                      |+.|..+|||+|++... .|++..-.|    ..+.++-+....+..++                  ...+.+..|...+|
T Consensus       263 VvVYsk~~CPyC~~Ak~~LL~~~gV~y----~eidVlEld~~~~~~e~------------------~~~L~~~tG~~TVP  320 (362)
T 2jad_A          263 IFVASKTYCPYSHAALNTLFEKLKVPR----SKVLVLQLNDMKEGADI------------------QAALYEINGQRTVP  320 (362)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTTCCCT----TTEEEEEGGGSTTHHHH------------------HHHHHHHHCCCSSC
T ss_pred             EEEEEcCCCcchHHHHHHHHHHcCCCc----ceEEEEEeccccCCHHH------------------HHHHHHHHCCCCcC
Confidence            45678999999998765 454321111    12344333211111111                  24556667899999


Q ss_pred             eeee
Q psy8729         128 SLIL  131 (190)
Q Consensus       128 ~~~l  131 (190)
                      .+++
T Consensus       321 qVFI  324 (362)
T 2jad_A          321 NIYI  324 (362)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8877

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=91.90  E-value=0.47  Score=32.47  Aligned_cols=47  Identities=17%  Similarity=0.167  Sum_probs=32.2

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGM  102 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~  102 (190)
                      +..|+.++|+.|+.....|.+       .|..++++-|.-+ .+.++++.++...
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~-------~gi~y~~~di~~~~~~~~el~~~l~~~   50 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEE-------HEIPFVERNIFSEPLSIDEIKQILRMT   50 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCEEEEETTTSCCCHHHHHHHHHTC
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------cCCceEEEEccCCCccHHHHHHHHHHc
Confidence            456789999999998888854       2334555544433 3457788888744

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=91.71  E-value=0.51  Score=31.89  Aligned_cols=66  Identities=18%  Similarity=0.199  Sum_probs=37.2

Q ss_pred             eeeeeccCCcEEEEEEEc-----CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCc
Q psy8729          37 KVLSYIESCQVIGLYFSA-----HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYAS  111 (190)
Q Consensus        37 ~~~~~~~~~k~vlv~F~a-----~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~  111 (190)
                      .+.+.+.++++  |.|.-     |.||+|++....|...       |.. .+..+.++.+.+ .                
T Consensus        12 ~i~~~i~~~~V--vvF~Kgt~~~P~C~fc~~ak~lL~~~-------gv~-~~~~~~v~~~~~-~----------------   64 (118)
T 2wul_A           12 QLDALVKKDKV--VVFLKGTPEQPQCGFSNAVVQILRLH-------GVR-DYAAYNVLDDPE-L----------------   64 (118)
T ss_dssp             HHHHHHHHSSE--EEEESBCSSSBSSHHHHHHHHHHHHT-------TCC-SCEEEETTSCHH-H----------------
T ss_pred             HHHHHHhcCCE--EEEEcCCCCCCCCHHHHHHHHHHHHh-------CCc-CeEeecccCCHH-H----------------
Confidence            33344445554  34443     5799999988877432       210 133445554432 1                


Q ss_pred             hhHHHHHHHcCCCCCCeeee
Q psy8729         112 ETRQSLASLYNVHGIPSLIL  131 (190)
Q Consensus       112 ~~~~~~~~~~~v~~~P~~~l  131 (190)
                        ...+.+.-|-..+|.+|+
T Consensus        65 --r~~l~~~sg~~TvPqIFI   82 (118)
T 2wul_A           65 --RQGIKDYSNWPTIPQVYL   82 (118)
T ss_dssp             --HHHHHHHHTCCSSCEEEE
T ss_pred             --HHHHHHhccCCCCCeEeE
Confidence              344555557788999988

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=91.70  E-value=0.18  Score=33.66  Aligned_cols=48  Identities=8%  Similarity=0.058  Sum_probs=32.6

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMP  103 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~  103 (190)
                      +..|+.++|+.|++....|.+       .|..++++-+.-+ .+.++++.++++.|
T Consensus         2 i~iY~~~~C~~C~kak~~L~~-------~gi~~~~~di~~~~~~~~~l~~~~~~~g   50 (114)
T 1rw1_A            2 YVLYGIKACDTMKKARTWLDE-------HKVAYDFHDYKAVGIDREHLRRWCAEHG   50 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------TTCCEEEEEHHHHCCCHHHHHHHHHHHC
T ss_pred             EEEEECCCChHHHHHHHHHHH-------CCCceEEEeecCCCCCHHHHHHHHHhCC
Confidence            456789999999998888854       2444556555433 35577777776555

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=91.44  E-value=0.48  Score=31.90  Aligned_cols=47  Identities=17%  Similarity=0.160  Sum_probs=32.4

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGM  102 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~  102 (190)
                      +..|+.++|+.|++....|.+       .|..++++-+.-+ .+.++++.++...
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~-------~gi~~~~~di~~~~~~~~el~~~l~~~   49 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNR-------HDVVFQEHNIMTSPLSRDELLKILSYT   49 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------TTCCEEEEETTTSCCCHHHHHHHHHHC
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCcHHHHHHHHhhc
Confidence            456789999999999888853       2334555555433 4567888888743

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=91.39  E-value=0.11  Score=39.46  Aligned_cols=105  Identities=11%  Similarity=0.104  Sum_probs=60.5

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ..++++|-|+.+||   ....+.+.++++.++++   +.+..+ .+                         ..+++.|++
T Consensus        23 ~~~v~vvgff~~~~---~~~~~~f~~~A~~lr~~---~~F~~~-~~-------------------------~~v~~~~~~   70 (252)
T 2h8l_A           23 DKDASIVGFFDDSF---SEAHSEFLKAASNLRDN---YRFAHT-NV-------------------------ESLVNEYDD   70 (252)
T ss_dssp             SSSCEEEEEESCTT---SHHHHHHHHHHHHTTTT---SCEEEE-CC-------------------------HHHHHHHCS
T ss_pred             cCCeEEEEEECCCC---ChHHHHHHHHHHhcccC---cEEEEE-Ch-------------------------HHHHHHhCC
Confidence            56678888999884   46677888888888665   334333 22                         467889999


Q ss_pred             CCCCeeeeeeecC--------CCceEEEc-cccc-cccccCCCCCcCCCCcccccccCCCCCCCCCCCCeEEEEE
Q psy8729         124 HGIPSLILLAVEA--------GGRLDVIT-TEAR-HELSEDPDGEFFPWPPKLVNVLSPRHCPKLYDSPALILFI  188 (190)
Q Consensus       124 ~~~P~~~l~~id~--------~g~~~i~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~  188 (190)
                      .. |++++  +.+        ++  .+.+ .+.. .+.+.++...   ..-+.+..++......+...|..++|.
T Consensus        71 ~~-p~i~~--fk~~~~~~kf~e~--~~~y~~g~~~~~~l~~fi~~---~~~Plv~e~t~~n~~~~~~~~~~v~~~  137 (252)
T 2h8l_A           71 NG-EGIIL--FRPSHLTNKFEDK--TVAYTEQKMTSGKIKKFIQE---NIFGICPHMTEDNKDLIQGKDLLIAYY  137 (252)
T ss_dssp             SS-EEEEE--ECCGGGCCTTSCS--EEECCCSSCCHHHHHHHHHH---HSSCSSCEECTTTHHHHSSSSEEEEEE
T ss_pred             CC-CcEEE--Ecchhhccccccc--ccccCCCCcCHHHHHHHHHh---cccCCeeecccccHhhhcCCCeEEEEe
Confidence            97 99888  542        24  3443 2221 1112222111   011345556665555555667776665

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=91.36  E-value=0.43  Score=38.42  Aligned_cols=71  Identities=13%  Similarity=0.170  Sum_probs=51.2

Q ss_pred             cEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC-
Q psy8729          46 QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH-  124 (190)
Q Consensus        46 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-  124 (190)
                      +..++.|+..+|+.|....+.+.+++++++++ .++.++.++.+....                   ....+.+.||+. 
T Consensus       248 ~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~-~ki~F~~id~~~~~~-------------------~l~~~~~~fgl~~  307 (367)
T 3us3_A          248 GIHIVAFAEEADPDGYEFLEILKSVAQDNTDN-PDLSIIWIDPDDFPL-------------------LVPYWEKTFDIDL  307 (367)
T ss_dssp             TEEEEEECCTTSHHHHHHHHHHHHHHHHTTTC-TTCCEEEECGGGCTT-------------------THHHHHHHHTCCT
T ss_pred             CcEEEEEEcCCChhHHHHHHHHHHHHHHcCCC-CceEEEEECCccchh-------------------HHHHHHHhcCCCC
Confidence            45667788999999999999999999999874 147777776653210                   012235678887 


Q ss_pred             CCCeeeeeeecCCC
Q psy8729         125 GIPSLILLAVEAGG  138 (190)
Q Consensus       125 ~~P~~~l~~id~~g  138 (190)
                      .+|.+.+  ++...
T Consensus       308 ~~P~~~i--~~~~~  319 (367)
T 3us3_A          308 SAPQIGV--VNVTD  319 (367)
T ss_dssp             TSCEEEE--EETTT
T ss_pred             CCCeEEE--Eeccc
Confidence            8999999  87643

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=91.31  E-value=0.96  Score=34.20  Aligned_cols=67  Identities=12%  Similarity=0.146  Sum_probs=45.1

Q ss_pred             EEEEEEEcCCChh----hhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          47 VIGLYFSAHWCPP----CKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        47 ~vlv~F~a~wC~~----C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      +++|.|+...+..    .......+.++++++++++..+.++.++.+.                       ...+.+.||
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~-----------------------~~~~~~~fg  187 (252)
T 2h8l_A          131 DLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKT-----------------------FSHELSDFG  187 (252)
T ss_dssp             SEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTT-----------------------THHHHGGGT
T ss_pred             CeEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHH-----------------------HHHHHHHcC
Confidence            3455555443321    1246778888999998755568888887653                       234678899


Q ss_pred             C----CCCCeeeeeeecCCC
Q psy8729         123 V----HGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v----~~~P~~~l~~id~~g  138 (190)
                      +    ..+|.+.+  ++.++
T Consensus       188 l~~~~~~~P~v~i--~~~~~  205 (252)
T 2h8l_A          188 LESTAGEIPVVAI--RTAKG  205 (252)
T ss_dssp             CCCCSCSSCEEEE--ECTTS
T ss_pred             CCCccCCCCEEEE--EeCcC
Confidence            9    35899999  87655

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=91.28  E-value=0.22  Score=33.55  Aligned_cols=49  Identities=14%  Similarity=0.314  Sum_probs=34.4

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMPW  104 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~~  104 (190)
                      +..|+.++|+.|++....|.+       .|..++++-+.-+ .+.++++.++++.++
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~-------~gi~y~~~di~~~~~~~~~l~~~~~~~g~   56 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLED-------HGIDYTFHDYKKEGLDAETLDRFLKTVPW   56 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------HTCCEEEEEHHHHCCCHHHHHHHHHHSCG
T ss_pred             EEEEECCCChHHHHHHHHHHH-------cCCcEEEEeeeCCCCCHHHHHHHHHHcCh
Confidence            556789999999999888854       2334666555433 356788888887774

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=91.05  E-value=0.47  Score=40.67  Aligned_cols=42  Identities=26%  Similarity=0.343  Sum_probs=26.6

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      ++.|..+|||+|+.....|.+.       +..+..+-|..+.+..+++.
T Consensus        20 v~vy~~~~Cp~C~~~k~~L~~~-------~i~~~~~dv~~~~~~~~~~~   61 (598)
T 2x8g_A           20 VILFSKTTCPYCKKVKDVLAEA-------KIKHATIELDQLSNGSAIQK   61 (598)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEEGGGSTTHHHHHH
T ss_pred             EEEEECCCChhHHHHHHHHHHC-------CCCcEEEEcccCcchHHHHH
Confidence            5678899999999988888642       22345555544433333333

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=90.80  E-value=0.41  Score=35.71  Aligned_cols=58  Identities=17%  Similarity=0.218  Sum_probs=42.4

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      ..++++||-|+++||   ....+.+.++++.+. +   +.+.. ..                         +..+++.|+
T Consensus        25 ~~~~v~vVgff~~~~---~~~~~~f~~~A~~l~-~---~~F~~-t~-------------------------~~~v~~~~~   71 (227)
T 4f9z_D           25 AATEVAVIGFFQDLE---IPAVPILHSMVQKFP-G---VSFGI-ST-------------------------DSEVLTHYN   71 (227)
T ss_dssp             HTSSEEEEEECSCSC---STHHHHHHHHTTTCT-T---SEEEE-EC-------------------------CHHHHHHTT
T ss_pred             hcCCeEEEEEecCCC---chhHHHHHHHHHhCC-C---ceEEE-EC-------------------------CHHHHHHcC
Confidence            367899999999985   678888888888773 2   34432 22                         257788999


Q ss_pred             CCCCCeeeeeeecC
Q psy8729         123 VHGIPSLILLAVEA  136 (190)
Q Consensus       123 v~~~P~~~l~~id~  136 (190)
                      +.+ |++++  +.+
T Consensus        72 v~~-p~i~l--fk~   82 (227)
T 4f9z_D           72 ITG-NTICL--FRL   82 (227)
T ss_dssp             CCS-SEEEE--EET
T ss_pred             CCC-CeEEE--EEe
Confidence            998 99998  544

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=90.30  E-value=0.95  Score=30.48  Aligned_cols=49  Identities=12%  Similarity=0.341  Sum_probs=34.4

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCC
Q psy8729          48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMP  103 (190)
Q Consensus        48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~  103 (190)
                      .+..|+.++|+.|++....|.+       .|..++++-+.-+ .+.++++.++...+
T Consensus         4 Mi~iY~~~~C~~c~ka~~~L~~-------~gi~~~~~di~~~~~~~~eL~~~l~~~g   53 (120)
T 3fz4_A            4 MLTFYEYPKCSTCRRAKAELDD-------LAWDYDAIDIKKNPPAASLIRNWLENSG   53 (120)
T ss_dssp             SEEEEECSSCHHHHHHHHHHHH-------HTCCEEEEETTTSCCCHHHHHHHHHHSC
T ss_pred             eEEEEeCCCChHHHHHHHHHHH-------cCCceEEEEeccCchhHHHHHHHHHHcC
Confidence            3556789999999999988853       2334555555444 46788888888665

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=90.04  E-value=1.5  Score=37.14  Aligned_cols=28  Identities=21%  Similarity=0.405  Sum_probs=23.5

Q ss_pred             HHHHHHHcCCCCCCeeeeeeecCCCceEEE
Q psy8729         114 RQSLASLYNVHGIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus       114 ~~~~~~~~~v~~~P~~~l~~id~~g~~~i~  143 (190)
                      +..+.++|||..+|++++  ++++|+...+
T Consensus       194 ~~~l~~kfgV~~~Pslvl--~~~nGk~~~~  221 (519)
T 3t58_A          194 ESDLVNKFGVTDFPSCYL--LLRNGSVSRV  221 (519)
T ss_dssp             CHHHHHHHTCCCSSEEEE--EETTSCEEEC
T ss_pred             hHHHHHHcCCCCCCeEEE--EeCCCceeec
Confidence            368899999999999999  9999965433

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=89.41  E-value=0.38  Score=32.53  Aligned_cols=49  Identities=8%  Similarity=0.181  Sum_probs=34.0

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMPW  104 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~~  104 (190)
                      +..|+.++|+.|++....|.+       .|..++.+-+.-+ .+.++++.++...++
T Consensus         7 i~iY~~p~C~~c~ka~~~L~~-------~gi~~~~~di~~~~~~~~eL~~~l~~~g~   56 (121)
T 3rdw_A            7 VTIYHNPRCSKSRETLALVEQ-------QGITPQVVLYLETPPSVDKLKELLQQLGF   56 (121)
T ss_dssp             CEEECCTTCHHHHHHHHHHHT-------TTCCCEEECTTTSCCCHHHHHHHHHHTTC
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCcHHHHHHHHHhcCC
Confidence            456779999999999888842       3334554444333 367888888888876

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=88.34  E-value=0.81  Score=30.83  Aligned_cols=48  Identities=15%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMP  103 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~  103 (190)
                      +..|+.++|+.|++....|.+       .|..++++-+.-+ .+.++++.++...+
T Consensus         6 i~iY~~p~C~~c~ka~~~L~~-------~gi~~~~~di~~~~~~~~eL~~~l~~~g   54 (120)
T 3gkx_A            6 TLFLQYPACSTCQKAKKWLIE-------NNIEYTNRLIVDDNPTVEELKAWIPLSG   54 (120)
T ss_dssp             CEEEECTTCHHHHHHHHHHHH-------TTCCCEEEETTTTCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCChHHHHHHHHHHH-------cCCceEEEecccCcCCHHHHHHHHHHcC
Confidence            456789999999999888853       2334555555444 45778888887555

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=85.92  E-value=0.62  Score=32.41  Aligned_cols=49  Identities=10%  Similarity=0.063  Sum_probs=32.3

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMPW  104 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~~  104 (190)
                      +..|+.++|+.|++....|.+       .|..++++-+.-+ .+.++++.++...++
T Consensus         4 itiY~~p~C~~crkak~~L~~-------~gi~~~~idi~~~~~~~~eL~~~~~~~g~   53 (141)
T 1s3c_A            4 ITIYHNPASGTSRNTLEMIRN-------SGTEPTIILYLENPPSRDELVKLIADMGI   53 (141)
T ss_dssp             CEEECCTTCHHHHHHHHHHHH-------TTCCCEEECTTTSCCCHHHHHHHHHHHTS
T ss_pred             EEEEECCCChHHHHHHHHHHH-------cCCCEEEEECCCCCccHHHHHHHhcccCC
Confidence            346779999999998888853       3334445444333 356778888776654

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=85.23  E-value=2.1  Score=34.44  Aligned_cols=65  Identities=8%  Similarity=0.038  Sum_probs=43.8

Q ss_pred             CCcEEEEEEEcCCCh-hhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          44 SCQVIGLYFSAHWCP-PCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .+++++|.|+.++|. .|..+...+.+.+.++++   .+.++.++.+.                       ...+.+.||
T Consensus       235 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~---~i~f~~id~~~-----------------------~~~~~~~~g  288 (382)
T 2r2j_A          235 EGLPFLILFHMKEDTESLEIFQNEVARQLISEKG---TINFLHADCDK-----------------------FRHPLLHIQ  288 (382)
T ss_dssp             TCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTT---TSEEEEEETTT-----------------------THHHHHHTT
T ss_pred             CCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCC---eeEEEEEchHH-----------------------hHHHHHHcC
Confidence            577888999999885 455555566655555543   47777777653                       245677888


Q ss_pred             CC--CCCeeeeeeecC
Q psy8729         123 VH--GIPSLILLAVEA  136 (190)
Q Consensus       123 v~--~~P~~~l~~id~  136 (190)
                      +.  .+|.+.+  ++.
T Consensus       289 l~~~~~P~i~i--~~~  302 (382)
T 2r2j_A          289 KTPADCPVIAI--DSF  302 (382)
T ss_dssp             CCGGGCSEEEE--ECS
T ss_pred             CCccCCCEEEE--Ecc
Confidence            86  6898887  654

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=84.28  E-value=3.4  Score=28.56  Aligned_cols=67  Identities=10%  Similarity=0.178  Sum_probs=42.7

Q ss_pred             CCcEEEEEEEcC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          44 SCQVIGLYFSAH-WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        44 ~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      ++.++.+.++.. .-..-....+.+.+++++++++   +.++.++.+.+.                     .......||
T Consensus        30 ~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgk---i~Fv~vd~~~~~---------------------~~~~l~~fG   85 (147)
T 3bj5_A           30 GEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK---ILFAFIDSDHTD---------------------NQRILEFFG   85 (147)
T ss_dssp             SSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTT---CEEEEECTTCGG---------------------GHHHHHHTT
T ss_pred             CCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCc---eEEEEEecchHh---------------------HHHHHHHcC
Confidence            344444444443 2233455778889999998765   556666543222                     345778899


Q ss_pred             CCC--CCeeeeeeecC
Q psy8729         123 VHG--IPSLILLAVEA  136 (190)
Q Consensus       123 v~~--~P~~~l~~id~  136 (190)
                      +..  +|.+.+  ++.
T Consensus        86 l~~~~~P~v~i--~~~   99 (147)
T 3bj5_A           86 LKKEECPAVRL--ITL   99 (147)
T ss_dssp             CCGGGCSEEEE--EEC
T ss_pred             CCcccCCEEEE--Eec
Confidence            985  899999  764

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=83.25  E-value=0.53  Score=31.70  Aligned_cols=50  Identities=10%  Similarity=0.099  Sum_probs=34.4

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-CCHHHHHHHHhCCCCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-RSESSYQSYLSGMPWP  105 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-~~~~~~~~~~~~~~~~  105 (190)
                      +..|+.++|+.|++....|.+       .|..++++-+.-+ .+.++++.+++..++.
T Consensus         6 i~iY~~p~C~~c~ka~~~L~~-------~gi~~~~~di~~~~~t~~eL~~~l~~~g~~   56 (119)
T 3f0i_A            6 VVIYHNPKCSKSRETLALLEN-------QGIAPQVIKYLETSPSVEELKRLYQQLGLN   56 (119)
T ss_dssp             CEEECCTTCHHHHHHHHHHHH-------TTCCCEEECHHHHCCCHHHHHHHHHHHTCS
T ss_pred             EEEEECCCChHHHHHHHHHHH-------cCCceEEEEeccCcCcHHHHHHHHHHcCCc
Confidence            456679999999999988853       2334555444333 4678888888877764

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=83.01  E-value=2.3  Score=30.96  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=26.8

Q ss_pred             EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEE
Q psy8729          47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIF   85 (190)
Q Consensus        47 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~   85 (190)
                      +.|..|+...||+|....+.+.++.+ +.+.+..+.+..
T Consensus         8 ~~I~~f~D~~CP~C~~~~~~~~~l~~-~~~~~v~v~~~~   45 (216)
T 2in3_A            8 PVLWYIADPMCSWCWGFAPVIENIRQ-EYSAFLTVKIMP   45 (216)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHH-HHTTTCEEEEEE
T ss_pred             eeEEEEECCCCchhhcchHHHHHHHh-cCCCCeEEEEee
Confidence            45778889999999988888888877 443223344433

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=80.87  E-value=2.4  Score=30.90  Aligned_cols=40  Identities=20%  Similarity=0.359  Sum_probs=30.3

Q ss_pred             EEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEee
Q psy8729          47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVS   87 (190)
Q Consensus        47 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~   87 (190)
                      ..|.+|+..-||.|-...+.|.++.+.+... ..+......
T Consensus         3 ~~I~~~~D~~CP~cy~~~~~l~~l~~~~~~~-v~v~~~p~~   42 (208)
T 3kzq_A            3 IKLYYVHDPMCSWCWGYKPTIEKLKQQLPGV-IQFEYVVGG   42 (208)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHSCTT-SEEEEEECC
T ss_pred             eEEEEEECCCCchhhhhhHHHHHHHHhCCCC-ceEEEEecc
Confidence            3577888999999999999999999988542 344444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	3e-28
d1o73a_	144	c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei	8e-21
d1o8xa_	144	c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula	2e-13
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	6e-07
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	8e-06
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	1e-04
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	1e-04
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	3e-04
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	0.001
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	0.003

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score =  101 bits (251), Expect = 3e-28
 Identities = 45/119 (37%), Positives = 75/119 (63%), Gaps = 5/119 (4%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
           + +  YFSA WCPP +AFTPQLI+ Y+   E    FE++ +S D S   ++ Y + MPW 
Sbjct: 29  KTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAEDFKDYYAKMPWL 87

Query: 106 AIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWP 163
           A+P+   +  + L + ++V  IP+L+ +  ++G   ++ITT+AR  + +DP+ + FPWP
Sbjct: 88  ALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSG---NIITTQARTMVVKDPEAKDFPWP 143

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

 Score = 81.9 bits (201), Expect = 8e-21
 Identities = 50/119 (42%), Positives = 67/119 (56%), Gaps = 5/119 (4%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
           + + LYFSA WCPPC+ FTP L E Y K       FE++ +S D +ES +  Y   MPW 
Sbjct: 29  KTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDYYGKMPWL 87

Query: 106 AIPYA-SETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWP 163
           A+P+    T   L   + V  IP+LI +  + G    +I T+AR  + EDPDG  FPWP
Sbjct: 88  ALPFDQRSTVSELGKTFGVESIPTLITINADTG---AIIGTQARTRVIEDPDGANFPWP 143

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

 Score = 62.4 bits (150), Expect = 2e-13
 Identities = 43/120 (35%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP 105
           +++  YFSA WCPP + FTPQLIE Y K  E      +     +  +     +       
Sbjct: 27  KLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLA 86

Query: 106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTEARHELSEDPDGEFFPWPPK 165
                SE  Q L+  +NV  IP+LI +  ++G   DV+TT AR  L +DP+GE FPW   
Sbjct: 87  VPFAQSEAVQKLSKHFNVESIPTLIGVDADSG---DVVTTRARATLVKDPEGEQFPWKDA 143

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 44.9 bits (105), Expect = 6e-07
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQF---EIIFVSSDRSESSYQSYLSGM 102
           +   + F A WCP C +   Q  +  +  K                ++ +  +Q + +G+
Sbjct: 24  KPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGL 83

Query: 103 PWPAIPYASETRQSLASLYNVHGIPSLILL 132
            +P +P  ++   ++A   N+   PS  L+
Sbjct: 84  NYPKLPVVTDNGGTIAQSLNISVYPSWALI 113

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.8 bits (97), Expect = 8e-06
 Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 1/88 (1%)

Query: 46  QVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSES-SYQSYLSGMPW 104
           +   ++F +  C  CK   PQ+ E   K ++      +    S+           +    
Sbjct: 30  KPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHD 89

Query: 105 PAIPYASETRQSLASLYNVHGIPSLILL 132
              P   ++  +L   +    +P+  + 
Sbjct: 90  ITQPIFVDSDHALTDAFENEYVPAYYVF 117

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 14/82 (17%), Positives = 24/82 (29%)

Query: 26  NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIF 85
           NI   E T   +    ++  +    +     CP C+ F   L     + K   Y      
Sbjct: 7   NIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEE 66

Query: 86  VSSDRSESSYQSYLSGMPWPAI 107
            S      +++S       P  
Sbjct: 67  PSQLNDLQAFRSRYGIPTVPGF 88

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 7/54 (12%), Positives = 14/54 (25%)

Query: 47  VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS 100
           V+ L       P        + E  R+  +  +Q  I  +    +         
Sbjct: 38  VVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFR 91

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 35.8 bits (82), Expect = 3e-04
 Identities = 8/82 (9%), Positives = 17/82 (20%), Gaps = 26/82 (31%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPY 109
             F++  CP C      +                                 G        
Sbjct: 6   EVFTSPTCPYCPMAIEVV--------------------------DEAKKEFGDKIDVEKI 39

Query: 110 ASETRQSLASLYNVHGIPSLIL 131
                +  A  Y +  +P++ +
Sbjct: 40  DIMVDREKAIEYGLMAVPAIAI 61

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 2/60 (3%)

Query: 50  LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPY 109
           L     WCP C+     L    R       +  II       +   +  L  +  P +  
Sbjct: 59  LVAGEMWCPDCQINLAALDFAQRLQPN--IELAIISKGRAEDDLRQRLALERIAIPLVLV 116

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 7/35 (20%), Positives = 11/35 (31%)

Query: 47 VIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQF 81
          VI L       P        + E  R+  +  +Q 
Sbjct: 32 VILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQV 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.95
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.94
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.93
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.89
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.89
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.88
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.88
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.85
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.85
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.85
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.83
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.82
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.73
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.71
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.71
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.71
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.7
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.67
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.66
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.65
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.65
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.63
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.63
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.63
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.63
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.63
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.63
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.61
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.6
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.58
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.58
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.58
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.58
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.57
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.56
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.56
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.56
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.55
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.55
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.54
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.54
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.54
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.54
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.53
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.52
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.52
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.52
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.51
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.51
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.51
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.5
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.49
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.48
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.47
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.46
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.45
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.44
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.43
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.39
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.39
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.39
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.32
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.31
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.31
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.17
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.14
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.13
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.06
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.93
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.88
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	98.88
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.69
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	98.64
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	98.33
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	98.31
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.14
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.1
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.97
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.92
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.64
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	97.52
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	97.31
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	97.3
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	97.15
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.14
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	97.02
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.82
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.45
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.17
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	95.48
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	94.16
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	91.64
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	90.84
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	90.59
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	89.67
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	86.31
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	82.34
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	80.6
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	80.01

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.95  E-value=2.4e-27  Score=169.40  Aligned_cols=133  Identities=38%  Similarity=0.795  Sum_probs=114.4

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      ...+.++++....++.+ +||+++|+|||+||++|+.++|.|++++++++++ .++.+++|+.|.+.+++++|+++++|.
T Consensus        10 ~~~~l~~~~~~v~ls~l-~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~-~~~~vi~vs~D~~~~~~~~~~~~~~~~   87 (144)
T d1i5ga_          10 STNVLKGAAADIALPSL-AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAEDFKDYYAKMPWL   87 (144)
T ss_dssp             CSEEEETTEEEEEGGGG-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTCSSE
T ss_pred             chhhccCCCCEeeHHHc-CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhc-cCcEEEEEeccccHHHHHHHHHhCCCC
Confidence            44455566656556666 8999999999999999999999999999999875 479999999999999999999999987


Q ss_pred             cccCCchh-HHHHHHHcCCCCCCeeeeeeecCC-CceEEEccccccccccCCCCCcCCCCc
Q psy8729         106 AIPYASET-RQSLASLYNVHGIPSLILLAVEAG-GRLDVITTEARHELSEDPDGEFFPWPP  164 (190)
Q Consensus       106 ~~~~~~~~-~~~~~~~~~v~~~P~~~l~~id~~-g~~~i~~~~~~~~~~~~~~~~~~~~~~  164 (190)
                      ..++.... ...+.+.|++.++|++++  ||++ |  +++...|+....++..++.|||..
T Consensus        88 ~~~~~d~~~~~~l~~~y~v~~iPt~~l--id~~~G--~vi~~~g~~~v~~d~~~~~fpw~~  144 (144)
T d1i5ga_          88 ALPFEDRKGMEFLTTGFDVKSIPTLVG--VEADSG--NIITTQARTMVVKDPEAKDFPWPN  144 (144)
T ss_dssp             ECCTTCHHHHHHHHHHTTCCSSSEEEE--EETTTC--CEEESCHHHHHHHCTTCTTTTCCC
T ss_pred             ceeeEChHHHHHHHHHCCCCCcCEEEE--EeCCCC--EEEeehhHHHHhhCcccccCCCCC
Confidence            77766444 456889999999999999  9996 9  888999999999999999999963

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.94  E-value=4.3e-27  Score=168.03  Aligned_cols=136  Identities=38%  Similarity=0.734  Sum_probs=115.1

Q ss_pred             cccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC
Q psy8729          23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM  102 (190)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~  102 (190)
                      ..|.++....++.+..++.+ +||+++|+|||+||++|+.++|.|++++++|.+. .++.+++|+.|.+.+.+++++.+.
T Consensus         7 ~~P~~~~~~~~~~~v~l~~~-~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~   84 (144)
T d1o73a_           7 YLPGATNLLSKSGEVSLGSL-VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDYYGKM   84 (144)
T ss_dssp             TSCTTCCBBCTTSCBCSGGG-TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTC
T ss_pred             CCCCceeeccCCCEEeHHHh-CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhc-cCeEEEEEecchhHHHHHHHHHhc
Confidence            34555555444445556665 8999999999999999999999999999999754 479999999999999999999999


Q ss_pred             CCCcccCCchh-HHHHHHHcCCCCCCeeeeeeecCC-CceEEEccccccccccCCCCCcCCCCc
Q psy8729         103 PWPAIPYASET-RQSLASLYNVHGIPSLILLAVEAG-GRLDVITTEARHELSEDPDGEFFPWPP  164 (190)
Q Consensus       103 ~~~~~~~~~~~-~~~~~~~~~v~~~P~~~l~~id~~-g~~~i~~~~~~~~~~~~~~~~~~~~~~  164 (190)
                      .+..+++..+. ...+.+.|++.++|++++  ||++ |  +++...++.+..+++.++.|||..
T Consensus        85 ~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~l--ID~~~G--~Ii~~~~~~~~~~d~~~~~fpw~~  144 (144)
T d1o73a_          85 PWLALPFDQRSTVSELGKTFGVESIPTLIT--INADTG--AIIGTQARTRVIEDPDGANFPWPN  144 (144)
T ss_dssp             SSEECCTTCHHHHHHHHHHHTCCSSSEEEE--EETTTC--CEEESCHHHHHHHCTTCTTTTCCC
T ss_pred             cccceeeeccchHHHHHHHcCCCcCCEEEE--EECCCC--EEEeecchhhhhhCcccccCCCCC
Confidence            88777775443 567899999999999999  9997 8  888999999999999999999963

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.93  E-value=1.9e-25  Score=159.04  Aligned_cols=137  Identities=42%  Similarity=0.778  Sum_probs=119.9

Q ss_pred             cccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC
Q psy8729          23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM  102 (190)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~  102 (190)
                      ..|++.+.+.++.+..++.+ +||+++|+||++||++|+..+|.|.+++++|... .++.+++|+.|.+.+++..+....
T Consensus         5 ~~P~~~~~~~~g~~v~l~~l-~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~-~~~~~v~is~d~~~~~~~~~~~~~   82 (144)
T d1o8xa_           5 YLPGIEKLRRGDGEVEVKSL-AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES-KNFEVVFCTWDEEEDGFAGYFAKM   82 (144)
T ss_dssp             TSTTCCEEEETTEEEEGGGG-TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHTTC
T ss_pred             CCCCcEeEcCCCCEEeHHHh-CCCEEEEEeccccccccccccchhHHhhhhcccc-cccccccccccccHHHHHHHHhhc
Confidence            56778887777777777776 8999999999999999999999999999999775 479999999999999999999888


Q ss_pred             CCCcccCCc-hhHHHHHHHcCCCCCCeeeeeeecCC-CceEEEccccccccccCCCCCcCCCCcc
Q psy8729         103 PWPAIPYAS-ETRQSLASLYNVHGIPSLILLAVEAG-GRLDVITTEARHELSEDPDGEFFPWPPK  165 (190)
Q Consensus       103 ~~~~~~~~~-~~~~~~~~~~~v~~~P~~~l~~id~~-g~~~i~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
                      .+..+++.. +....+.+.|++.++|++++  ||++ |  +++...++++..++...+.|||.+.
T Consensus        83 ~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~l--iD~~~G--~Vi~~~~~~~~~~d~~~~~~~w~~~  143 (144)
T d1o8xa_          83 PWLAVPFAQSEAVQKLSKHFNVESIPTLIG--VDADSG--DVVTTRARATLVKDPEGEQFPWKDA  143 (144)
T ss_dssp             SSEECCGGGHHHHHHHHHHTTCCSSSEEEE--EETTTC--CEEESCHHHHHTTCTTCTTTTCCCC
T ss_pred             cccceeeecccchhhHHHHcCCCcCCEEEE--EeCCCC--EEEEEechhhhhhCcccccCCCCCC
Confidence            877776654 44678999999999999999  9987 8  7889999999999999999999763

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=1.1e-23  Score=156.46  Aligned_cols=117  Identities=13%  Similarity=0.208  Sum_probs=100.9

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-------CCHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-------RSES   93 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-------~~~~   93 (190)
                      +.++|+|.|.+.+|....++.+ +||++||.||++|||+|+.++|.|++++++|+++   +.+++|+..       .+.+
T Consensus         9 G~~aPdF~l~d~~G~~~~Lsd~-kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~---v~~v~i~snd~~~~~~~~~e   84 (187)
T d2cvba1           9 ESPLIDAELPDPRGGRYRLSQF-HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAPE   84 (187)
T ss_dssp             TCBCCCCEEECTTSCEEEGGGC-CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSHH
T ss_pred             CCccCccEeecCCCCEEEHHHh-CCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc---ceeeeeeccccccccccchH
Confidence            5678999999999888888887 7899999999999999999999999999999754   788888642       3457


Q ss_pred             HHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEEccc
Q psy8729          94 SYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVITTE  146 (190)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~~~~  146 (190)
                      .++.|.+++++ .+|+..|.+..+.++|++.++|++++  ||++|  ++++++
T Consensus        85 ~~~~~~~~~~~-~~p~l~D~~~~~~~~~~v~~~P~~~l--iD~~G--~i~y~G  132 (187)
T d2cvba1          85 KMAAFAEEHGI-FFPYLLDETQEVAKAYRALRTPEVFL--FDERR--LLRYHG  132 (187)
T ss_dssp             HHHHHHHHHTC-CSCEEECSSSHHHHHTTCCEESEEEE--ECTTC--BEEEEE
T ss_pred             HHHHHHHHhCC-cceeeechhhhhcccccccceeeEEE--EcCCC--eEEEEe
Confidence            89999998885 57888888899999999999999999  99999  566543

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=3.3e-23  Score=145.60  Aligned_cols=110  Identities=16%  Similarity=0.244  Sum_probs=97.7

Q ss_pred             ccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCC
Q psy8729          24 TYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMP  103 (190)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~  103 (190)
                      ..+|++.+.+|+...++.+ +||+++|+||++||++|+.++|.|+++++++++    ..+++|+.++..+..+.|+++++
T Consensus         5 ~~df~~~~~~G~~~~l~~~-~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~----~~~v~v~~~d~~~~~~~~~~~~~   79 (134)
T d1zzoa1           5 QLQFSAKTLDGHDFHGESL-LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVPAMQEFVNKYP   79 (134)
T ss_dssp             GGCCEEEBTTSCEEEGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSCHHHHHHHHHHTT
T ss_pred             CcceeEEcCCCCEEeHHHh-CCCEEEEEecccccCcccccchhhHHHHhhhcc----cccccccccccchhHHHHHHhcC
Confidence            4568888888877777777 799999999999999999999999999998754    56788888888999999999999


Q ss_pred             CCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         104 WPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      +..++...|.+..+.+.||+.++|++++  ||++|++
T Consensus        80 ~~~~~~l~D~~~~~~~~~~v~~~P~~~i--iD~~G~i  114 (134)
T d1zzoa1          80 VKTFTQLADTDGSVWANFGVTQQPAYAF--VDPHGNV  114 (134)
T ss_dssp             CTTSEEEECTTCHHHHHTTCCSSSEEEE--ECTTCCE
T ss_pred             CcceeEEeeccchHHHhcCCCccCeEEE--ECCCCeE
Confidence            8888888888889999999999999999  9999954

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=1.1e-22  Score=143.43  Aligned_cols=114  Identities=22%  Similarity=0.426  Sum_probs=101.3

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHh
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLS  100 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~  100 (190)
                      +..+|+|++.+.+|+...++.+ +|++++|+||++||++|+..++.++++++++.+.  ++.+++|+.+++.+.+++|++
T Consensus         2 G~~~P~f~l~~~~G~~~~l~~~-~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~   78 (137)
T d1st9a_           2 GSDAPNFVLEDTNGKRIELSDL-KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ--GVEIVAVNVGESKIAVHNFMK   78 (137)
T ss_dssp             CEECCCCEEECTTSCEEEGGGG-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCCHHHHHHHHH
T ss_pred             cCcCCCeEEECCCcCEEeHHHh-CCCEEEEEEeeccccceeeccccccccccccccc--ccccccccccchhhhHHHHHH
Confidence            3467899999888877777776 8899999999999999999999999999999886  499999999989999999999


Q ss_pred             CCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         101 GMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      ++++ .+++..|.+..+.+.|++.++|++++  +|++|++
T Consensus        79 ~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~l--iD~~G~i  115 (137)
T d1st9a_          79 SYGV-NFPVVLDTDRQVLDAYDVSPLPTTFL--INPEGKV  115 (137)
T ss_dssp             HTTC-CSCEEEETTSHHHHHTTCCSSCEEEE--ECTTSEE
T ss_pred             HcCC-CccccccccchhhhhhhccccceEEE--ECCCCEE
Confidence            9875 36777777889999999999999999  9999944

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=4.4e-23  Score=145.19  Aligned_cols=113  Identities=16%  Similarity=0.248  Sum_probs=98.2

Q ss_pred             cccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC
Q psy8729          23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM  102 (190)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~  102 (190)
                      ..++|++.+.+|+...++.+ +||+++|+||++|||+|+..+|.|++++++++    ++.+++|+.+.+.+.+++|++++
T Consensus         3 ~~~~f~~~~~~G~~~~l~~~-~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~----~v~~v~v~~~~~~~~~~~~~~~~   77 (134)
T d1lu4a_           3 ERLQFTATTLSGAPFDGASL-QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP----AVTFVGIATRADVGAMQSFVSKY   77 (134)
T ss_dssp             GGGCCEEEBTTSCEEEGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHHHH
T ss_pred             CCCcceeECCCCCEEcHHHh-CCCEEEEEEeecccCCceecchhHHHHhhhhc----cccccccccccchhhhhhhhhhh
Confidence            45678888888888888777 79999999999999999999999999988753    47889999998999999999998


Q ss_pred             CCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEE
Q psy8729         103 PWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~  143 (190)
                      +. .+|+..|....+.+.||+.++|++++  ||++|+++.+
T Consensus        78 ~~-~~p~~~d~~~~~~~~~~v~~~P~~~l--id~~G~i~~v  115 (134)
T d1lu4a_          78 NL-NFTNLNDADGVIWARYNVPWQPAFVF--YRADGTSTFV  115 (134)
T ss_dssp             TC-CSEEEECTTSHHHHHTTCCSSSEEEE--ECTTSCEEEE
T ss_pred             cc-ccceeeCchHHHHHHcCCCcCCEEEE--EeCCCeEEEE
Confidence            85 57777888889999999999999999  9999955433

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.8e-22  Score=140.56  Aligned_cols=103  Identities=16%  Similarity=0.190  Sum_probs=86.4

Q ss_pred             CCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCC
Q psy8729          31 EGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYA  110 (190)
Q Consensus        31 ~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~  110 (190)
                      |..++....+.+.+||++||+|||+||++|+.++|.|+++++    .  ++.+++++.+.+....+.++.+.++...+..
T Consensus         6 d~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~   79 (136)
T d1z5ye1           6 DNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----Q--GIRVVGMNYKDDRQKAISWLKELGNPYALSL   79 (136)
T ss_dssp             SSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----T--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEE
T ss_pred             cCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----h--hhhhcccccccchhhhHHHHHHcCCccceee
Confidence            444555555666689999999999999999999999988754    2  3778999999899999999998887777677


Q ss_pred             chhHHHHHHHcCCCCCCeeeeeeecCCCceE
Q psy8729         111 SETRQSLASLYNVHGIPSLILLAVEAGGRLD  141 (190)
Q Consensus       111 ~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~  141 (190)
                      .|.+..+.+.|++.++|++++  ||++|+++
T Consensus        80 ~d~~~~~~~~~~v~~~P~~~l--iD~~G~i~  108 (136)
T d1z5ye1          80 FDGDGMLGLDLGVYGAPETFL--IDGNGIIR  108 (136)
T ss_dssp             EESSCHHHHHHTCCSBSEEEE--ECTTSCEE
T ss_pred             cccchhHHHhcccCCcceEEE--EcCCCEEE
Confidence            777888999999999999999  99999553

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.85  E-value=5.4e-22  Score=140.76  Aligned_cols=112  Identities=21%  Similarity=0.348  Sum_probs=92.1

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC-----CCHHHHHHHHhC
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD-----RSESSYQSYLSG  101 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d-----~~~~~~~~~~~~  101 (190)
                      .+|++.+++...+..+ +||+++|+|||+||++|+..+|.|++++++++..  ++.+++|+.+     ....+..++..+
T Consensus         6 ~~l~~~~~~~~~l~~~-~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~~   82 (143)
T d2fy6a1           6 STLKTADNRPASVYLK-KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKWYAG   82 (143)
T ss_dssp             HTCEETTSCBGGGGCC-TTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGT--TSEEEEEECTTSTTCCCTTHHHHHHTT
T ss_pred             ceeECCCCCEeeHHHh-CCCEEEEEEECCCCccccccCcchhhhhhhhccC--CcEEEEEeeeecccccchhhhhhhhhh
Confidence            3455666655555554 7899999999999999999999999999998876  4778888864     234567788888


Q ss_pred             CCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceEEE
Q psy8729         102 MPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~i~  143 (190)
                      .++..+|+..|.+..+.+.|++.++|++++  ||++|+++..
T Consensus        83 ~~~~~~~~~~D~~~~~~~~~~v~~~P~~~l--iD~~G~i~~~  122 (143)
T d2fy6a1          83 LNYPKLPVVTDNGGTIAQSLNISVYPSWAL--IGKDGDVQRI  122 (143)
T ss_dssp             SCCTTSCEEECTTCHHHHHTTCCSSSEEEE--ECTTSCEEEE
T ss_pred             cCCcccccccccchHHHHHcCCCccCEEEE--ECCCCEEEEE
Confidence            888889999999999999999999999999  9999955333

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=2.2e-21  Score=137.79  Aligned_cols=114  Identities=14%  Similarity=0.186  Sum_probs=90.9

Q ss_pred             CCcccceeccC--CCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-----CHH
Q psy8729          21 AKKTYNIGLAE--GTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-----SES   93 (190)
Q Consensus        21 ~~~~~~~~l~~--~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-----~~~   93 (190)
                      +.++|+|++.+  .++.....+.. ++|+++|+||++||++|+..+|.|+++++++++.   +.+++|+.+.     +.+
T Consensus         4 g~~aP~~~~~~~~~ng~~~~~~~~-~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~---~~~i~v~~~~~~~~~~~~   79 (143)
T d2b5xa1           4 RQPMPELTGEKAWLNGEVTREQLI-GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPG   79 (143)
T ss_dssp             TCBCCCCCCCSEEESCCCCHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHH
T ss_pred             CCcCCCCcCCccCcCCeEecHHHh-CCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc---ccceeEEeeccccccchh
Confidence            34566666544  24444444444 7899999999999999999999999999999754   6788887642     456


Q ss_pred             HHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCCceE
Q psy8729          94 SYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGGRLD  141 (190)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~~  141 (190)
                      .+++|++++++ .+|+..|.+..+.+.|++.++|++++  ||++|+++
T Consensus        80 ~~~~~~~~~~~-~~p~~~D~~~~~~~~~~v~~~P~~~~--id~~G~i~  124 (143)
T d2b5xa1          80 KIKETAAEHDI-TQPIFVDSDHALTDAFENEYVPAYYV--FDKTGQLR  124 (143)
T ss_dssp             HHHHHHHHTTC-CSCEEECSSCHHHHHTCCCCSSEEEE--ECTTCBEE
T ss_pred             hhhhHHHhhcc-CccccccCccchHHHcCCCcCCEEEE--ECCCCEEE
Confidence            78999999986 57777788889999999999999999  99999553

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.83  E-value=2.4e-21  Score=137.71  Aligned_cols=96  Identities=18%  Similarity=0.302  Sum_probs=82.2

Q ss_pred             eeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHH
Q psy8729          37 KVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQS  116 (190)
Q Consensus        37 ~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (190)
                      ...+.+ +||++||+||++||++|+.++|.++++++.+     ++.+++|+.+....+.+.+..++++...++..|.+..
T Consensus        24 ~~~~~~-kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~   97 (144)
T d1knga_          24 LDPAAF-KGKVSLVNVWASWCVPCHDEAPLLTELGKDK-----RFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGR   97 (144)
T ss_dssp             BCGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHTTCT-----TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSH
T ss_pred             cCHHHh-CCCEEEEEeeccccccccccCchhhhhhhcc-----CceeEEEEeeechHHHHHHHHHcCCccccccccccch
Confidence            333444 7999999999999999999999998876554     3678889999899999999998887777777777889


Q ss_pred             HHHHcCCCCCCeeeeeeecCCCce
Q psy8729         117 LASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       117 ~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      +.+.|++.++|++++  ||++|++
T Consensus        98 ~~~~~~v~~~P~~~l--iD~~G~i  119 (144)
T d1knga_          98 ASIEWGVYGVPETFV--VGREGTI  119 (144)
T ss_dssp             HHHHTTCCSSCEEEE--ECTTSBE
T ss_pred             hhhhcCccccceEEE--EcCCCeE
Confidence            999999999999999  9999944

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.82  E-value=5.4e-20  Score=134.82  Aligned_cols=115  Identities=22%  Similarity=0.396  Sum_probs=95.9

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-CHHHHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-SESSYQSYL   99 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-~~~~~~~~~   99 (190)
                      ..+.|+|++.+.+|+...++++ +||++||+||++||++|+...+.++++++++.+.  ++.++.|++|. +.+.++.|+
T Consensus        33 ~~~~Pdf~l~d~~G~~v~L~~~-kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d~~~~~~~~~~~  109 (176)
T d1jfua_          33 PLKLPDLAFEDADGKPKKLSDF-RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP--NFEVVAINIDTRDPEKPKTFL  109 (176)
T ss_dssp             CCBCCCCEEECTTSCEEEGGGG-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT--TEEEEEEECCCSCTTHHHHHH
T ss_pred             CCcCCCeEEECCCcCEEeHHHh-CCCEEEEEeccCcccchHHHHHhhhhcccccccc--ccccccccccccchhhhhhhH
Confidence            4467899999999888888887 8899999999999999999999999999998876  58888999874 577899999


Q ss_pred             hCCCCCcccCCchhHH----HHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         100 SGMPWPAIPYASETRQ----SLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       100 ~~~~~~~~~~~~~~~~----~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                      +++++...++..+...    .+...|++.++|++++  ||++|++
T Consensus       110 ~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~l--ID~~G~I  152 (176)
T d1jfua_         110 KEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVL--VDPQGCE  152 (176)
T ss_dssp             HHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEE--ECTTSBE
T ss_pred             hhhCCcceeeeecchhHHHHHHhhhccCCCCCeEEE--EcCCCEE
Confidence            9998766655555433    4455667889999999  9999954

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.73  E-value=9.5e-18  Score=121.73  Aligned_cols=121  Identities=22%  Similarity=0.284  Sum_probs=97.2

Q ss_pred             CCCCCccccee----ccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCH
Q psy8729          18 SKGAKKTYNIG----LAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSE   92 (190)
Q Consensus        18 ~~~~~~~~~~~----l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~   92 (190)
                      ...+.++|+|+    |.|++|....++++ +||++||.|| ++||+.|...++.|++.+++|.+.|  +.+++|+.| +.
T Consensus         3 ~kvG~~APdF~~~~~l~d~~g~~vsLsd~-~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~--~~v~~is~d-~~   78 (167)
T d1e2ya_           3 AKLNHPAPEFDDMALMPNGTFKKVSLSSY-KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEIN--TEVISCSCD-SE   78 (167)
T ss_dssp             CCTTSBCCCCEEEEECSSSCEEEEEGGGG-TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESS-CH
T ss_pred             ccCCCCCCCCcccccccCCCCcEEeHHHH-CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCc--eEEEeecCC-cH
Confidence            34466788887    77888888888887 7899999999 9999999999999999999999874  999999987 45


Q ss_pred             HHHHHHHhCCC------CCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEEc
Q psy8729          93 SSYQSYLSGMP------WPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        93 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~~  144 (190)
                      +..+.+..+..      -..+++..|....+.+.|++.      .+|++|+  ||++|+++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfv--ID~~G~Ir~~~  140 (167)
T d1e2ya_          79 YSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFI--IDPNGKLRQII  140 (167)
T ss_dssp             HHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEE--ECTTSBEEEEE
T ss_pred             HhHHHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEE--ECCCCEEEEEE
Confidence            55666665432      235677788889999999983      4678999  99999665443

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.71  E-value=4.2e-17  Score=120.98  Aligned_cols=120  Identities=18%  Similarity=0.247  Sum_probs=99.1

Q ss_pred             CCCCccccee----ccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHH
Q psy8729          19 KGAKKTYNIG----LAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSES   93 (190)
Q Consensus        19 ~~~~~~~~~~----l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~   93 (190)
                      +.+.++|+|+    +.|+++....++++ +||++||+|| ++||+.|..++..++++++++...  ++++++||.| +..
T Consensus         4 e~~~PAPdFtl~a~l~d~~g~~vsLsd~-~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~--g~~VlgIS~D-s~~   79 (194)
T d1uula_           4 EDLHPAPDFNETALMPNGTFKKVALTSY-KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI--GCEVLACSMD-SEY   79 (194)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGGG-TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT--TEEEEEEESS-CHH
T ss_pred             ccCCCCCCCcccccccCCCCcEEehHHh-CCCeEEEEEEeCCccccchhhhhHHHhhhhhhccC--ceEEEEEecC-chh
Confidence            3455788888    66778877777777 7899999999 999999999999999999999886  5999999988 555


Q ss_pred             HHHHHHhCCC------CCcccCCchhHHHHHHHcCC------CCCCeeeeeeecCCCceEEEc
Q psy8729          94 SYQSYLSGMP------WPAIPYASETRQSLASLYNV------HGIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        94 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v------~~~P~~~l~~id~~g~~~i~~  144 (190)
                      ..+.|.+.+.      -..+|+..|.+.+++++||+      ...|++|+  ||++|+++.+.
T Consensus        80 s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfv--ID~~G~I~~~~  140 (194)
T d1uula_          80 SHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFI--IDPKQNLRQIT  140 (194)
T ss_dssp             HHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEE--ECTTSBEEEEE
T ss_pred             hhhhhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEE--ECCCCeEEEEE
Confidence            6677776542      35788889999999999998      34788999  99999776554

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=2.2e-17  Score=119.99  Aligned_cols=118  Identities=13%  Similarity=0.098  Sum_probs=91.0

Q ss_pred             CCcccceeccCCCc---------------cceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEE
Q psy8729          21 AKKTYNIGLAEGTV---------------TTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEII   84 (190)
Q Consensus        21 ~~~~~~~~l~~~~~---------------~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii   84 (190)
                      +..+|+|+|++..+               ....++++ +||++||.|| ++|||.|...++.+++.++++.+.|  ++++
T Consensus         6 Gd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~-~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g--~~vv   82 (169)
T d2bmxa1           6 GDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEH-PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQIL   82 (169)
T ss_dssp             TCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSS-TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EEEE
T ss_pred             CCCCCCCEEeeccCCcccccccccccccccEeeHHHH-CCCeEEEEEecCCCCccccccccccccccccccccC--ccee
Confidence            44556777664333               33444555 7999999999 9999999999999999999999875  8999


Q ss_pred             EeeCCCCHHHHHHHHhCCC---CCcccCCchhHHHHHHHcCC-----CCCCeeeeeeecCCCceEEEc
Q psy8729          85 FVSSDRSESSYQSYLSGMP---WPAIPYASETRQSLASLYNV-----HGIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        85 ~i~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v-----~~~P~~~l~~id~~g~~~i~~  144 (190)
                      +|+.|. ....+.|.+.+.   ...+|+..|.+.+++++||+     ...|++++  ||++|+++.+.
T Consensus        83 ~is~d~-~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~~~~~~~r~~fv--ID~~G~I~~~~  147 (169)
T d2bmxa1          83 GVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFI--VDPNNEIQFVS  147 (169)
T ss_dssp             EEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEE--ECTTSBEEEEE
T ss_pred             eccccc-hhhhhhhcccccccccceEEEEeccHHHHHHHcCCCccCCccceeEEE--EcCCCEEEEEE
Confidence            999985 444455555442   35688889999999999998     57899999  99999665443

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.71  E-value=2.8e-17  Score=119.16  Aligned_cols=118  Identities=13%  Similarity=0.171  Sum_probs=93.6

Q ss_pred             CCcccceeccC----CCccceeeeeccCCcEEEEEEEcC-CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHH
Q psy8729          21 AKKTYNIGLAE----GTVTTKVLSYIESCQVIGLYFSAH-WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSY   95 (190)
Q Consensus        21 ~~~~~~~~l~~----~~~~~~~~~~~~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~   95 (190)
                      +..+|+|++++    .++.+..++++ +||++||.||.. |||.|..+++.|++.+++|.+.|  +++++||.| +.+..
T Consensus         4 G~~aP~F~l~~~~~g~~~~~vslsd~-~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g--~~vv~IS~D-~~~~~   79 (166)
T d1we0a1           4 GTEVQPFRAQAFQSGKDFFEVTEADL-KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTD-THFVH   79 (166)
T ss_dssp             TCBCCCCEEEEECSSSCCEEEETTTT-SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESS-CHHHH
T ss_pred             CCcCCCCEEeeecCCcceeEeeHHHh-CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccc--eEEEecccc-cHHHH
Confidence            34567777764    33444556665 799999999955 99999999999999999999874  999999998 66677


Q ss_pred             HHHHhCCC---CCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEEc
Q psy8729          96 QSYLSGMP---WPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        96 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~~  144 (190)
                      +.|.+++.   -..+|+..|.+..+.++||+.      ..|++|+  ||++|+++.+.
T Consensus        80 ~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfv--ID~~G~I~~~~  135 (166)
T d1we0a1          80 KAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFI--IDPDGVIQAIE  135 (166)
T ss_dssp             HHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEE--ECTTSBEEEEE
T ss_pred             HHHhhhhhhhcccccccccCcccHHHHHhCCCccccCcccceEEE--ECCCCcEEEEE
Confidence            77877652   246888899999999999984      4678999  99999665443

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.70  E-value=7.7e-18  Score=121.09  Aligned_cols=118  Identities=18%  Similarity=0.227  Sum_probs=96.2

Q ss_pred             CCCcccceeccCCCccceeeeec-cCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLSYI-ESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~-~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      .+.++|+|+|.+.+|+...++++ .+||++||.|| ++|||+|...++.++++++++.+.+  +.+++|+.| +.+..+.
T Consensus         4 vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d-~~~~~~~   80 (160)
T d2cx4a1           4 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVD-SPWCLKK   80 (160)
T ss_dssp             TTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTC--CEEEEEESS-CHHHHHH
T ss_pred             CCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccc--ccccccccc-chhhhhh
Confidence            35567889999988877666554 46888999988 9999999999999999999988764  889999987 6777888


Q ss_pred             HHhCCCCCcccCCchhHHHHHHHcCCC----------CCCeeeeeeecCCCceEEE
Q psy8729          98 YLSGMPWPAIPYASETRQSLASLYNVH----------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~v~----------~~P~~~l~~id~~g~~~i~  143 (190)
                      +..+++. .+++..|.+..+.+.||+.          ..|++++  ||++|+++..
T Consensus        81 ~~~~~~~-~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~fl--Id~~G~I~~~  133 (160)
T d2cx4a1          81 FKDENRL-AFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFI--VKPDGTVAYK  133 (160)
T ss_dssp             HHHHHTC-SSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEE--ECTTSBEEEE
T ss_pred             hccccee-eEEEeecCCcchHHHcCccccccccccccceeeEEE--EcCCCEEEEE
Confidence            8887764 5677788888999999973          4789999  9999965444

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.67  E-value=7.7e-17  Score=108.07  Aligned_cols=80  Identities=24%  Similarity=0.506  Sum_probs=67.6

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      .+++++.+++..+    .++++++|+||++||++|+.+.|.+.+++++++++   +.++.|++|.               
T Consensus         2 ~i~lt~~~f~~~i----~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~vd~~~---------------   59 (105)
T d1nw2a_           2 TMTLTDANFQQAI----QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDE---------------   59 (105)
T ss_dssp             CEEECTTTHHHHT----TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTT---------------
T ss_pred             EEEECHHHHHHHH----hCCCcEEEEEECCCCCCcccccchhhhhhhhcCCc---eEEEEEECCC---------------
Confidence            4677888876544    36789999999999999999999999999998764   8888888875               


Q ss_pred             cccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                              ...++++|+|.++||+++  + ++|
T Consensus        60 --------~~~~~~~~~V~~~Pt~~~--~-~~G   81 (105)
T d1nw2a_          60 --------NPETTSQFGIMSIPTLIL--F-KGG   81 (105)
T ss_dssp             --------CHHHHHHTTCCBSSEEEE--E-ETT
T ss_pred             --------CcccHHHCCcceeeEEEE--E-ECC
Confidence                    357799999999999999  7 467

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=3.4e-16  Score=112.48  Aligned_cols=115  Identities=15%  Similarity=0.219  Sum_probs=94.4

Q ss_pred             cccceecc---CCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          23 KTYNIGLA---EGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        23 ~~~~~~l~---~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      .+|+|+++   ++++....++++ .||++||+|| +.|||.|..+++.+++.+.++.+.|  .++++||.| +....++|
T Consensus         2 ~AP~F~l~~~~~~~~~~vsL~d~-~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~--~~vigIS~d-~~~~~~~~   77 (158)
T d1zyea1           2 HAPYFKGTAVVSGEFKEISLDDF-KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVD-SHFSHLAW   77 (158)
T ss_dssp             BCCCCEEEEECSSSEEEEEGGGG-TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESS-CHHHHHHH
T ss_pred             CCCCCccceeeCCCccEEeHHHh-CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCC--ceEEeccCc-CHHHHHHH
Confidence            46777654   566666677776 7899999999 9999999999999999999999874  999999998 56677888


Q ss_pred             HhCC------CCCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEE
Q psy8729          99 LSGM------PWPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        99 ~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~  143 (190)
                      ....      +-..+++..|....+.+.||+.      +.|++|+  ||++|+++.+
T Consensus        78 ~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfv--ID~~G~I~~~  132 (158)
T d1zyea1          78 INTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFI--IDPNGVIKHL  132 (158)
T ss_dssp             HTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEE--ECTTSBEEEE
T ss_pred             HhhhHhhccccccccccccccccHHHHHHHhccccCCccccEEEE--ECCCCEEEEE
Confidence            8764      3457888899999999999985      3567899  9999966543

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=2.7e-16  Score=112.21  Aligned_cols=118  Identities=13%  Similarity=0.178  Sum_probs=90.7

Q ss_pred             CCCcccceeccCCCccceeeeeccCCcEEEEE-EEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLSYIESCQVIGLY-FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~-F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      .+.++|+|++.+.+|+...++++...+++++. ||++|||.|..+++.++++++++...  ++++++++.| +.+.+++|
T Consensus         4 vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~--~~~vi~vs~d-~~~~~~~~   80 (153)
T d1xvwa1           4 VGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND--DSAALAISVG-PPPTHKIW   80 (153)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS--SEEEEEEESC-CHHHHHHH
T ss_pred             CcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhccc--ccccccccch-hhhHHHHH
Confidence            35677899999999888888877444555554 55999999999999999999998765  5999999987 67888999


Q ss_pred             HhCCCCCcccCCc--hhHHHHHHHcCCC------CCCeeeeeeecCCCceEEE
Q psy8729          99 LSGMPWPAIPYAS--ETRQSLASLYNVH------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        99 ~~~~~~~~~~~~~--~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~  143 (190)
                      .+++++. +++..  +....+.+.||+.      ..|++++  ||++|+++..
T Consensus        81 ~~~~~~~-~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfv--ID~~G~I~~~  130 (153)
T d1xvwa1          81 ATQSGFT-FPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFV--VDRSGIIRFA  130 (153)
T ss_dssp             HHHHTCC-SCEEECTTTTTHHHHHTTCEETTTTEECSEEEE--ECTTSBEEEE
T ss_pred             hhhhccc-eeEEecccccchhHHHhhhhhhccCceeeeEEE--ECCCCEEEEE
Confidence            9988753 33333  3367899999874      3467899  9999965433

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.7e-16  Score=113.90  Aligned_cols=118  Identities=17%  Similarity=0.207  Sum_probs=94.2

Q ss_pred             CCCcccceeccCCCccceeeeec-cCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          20 GAKKTYNIGLAEGTVTTKVLSYI-ESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~-~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      .+.++|+|+|.+.+|+...++.+ .++++++++|| ++|||.|...++.+++.+++|.+.   ..+++|+.| +.+..++
T Consensus         7 vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~---~~~~~is~d-~~~~~~~   82 (156)
T d2a4va1           7 IGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---AAVFGLSAD-SVTSQKK   82 (156)
T ss_dssp             TTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---CEEEEEESC-CHHHHHH
T ss_pred             CCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc---cceeeeccc-hhhhHHh
Confidence            35677899999988887777665 35677777777 899999999999999999999754   568899987 7888999


Q ss_pred             HHhCCCCCcccCCchhHHHHHHHcCCCCCCe-----eeeeeecCCCceEEEc
Q psy8729          98 YLSGMPWPAIPYASETRQSLASLYNVHGIPS-----LILLAVEAGGRLDVIT  144 (190)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~-----~~l~~id~~g~~~i~~  144 (190)
                      |.++++. .+|++.|.+..+.++||+...|.     .++  |+.+|++++..
T Consensus        83 f~~~~~l-~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~--i~~dg~i~~~~  131 (156)
T d2a4va1          83 FQSKQNL-PYHLLSDPKREFIGLLGAKKTPLSGSIRSHF--IFVDGKLKFKR  131 (156)
T ss_dssp             HHHHHTC-SSEEEECTTCHHHHHHTCBSSSSSCBCCEEE--EEETTEEEEEE
T ss_pred             hhcccCc-cceeccchHHHHHHHcCCCccccCCeeEEEE--EEECCeEEEEE
Confidence            9999886 58999999999999999876653     444  55788554443

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.63  E-value=5.2e-16  Score=112.82  Aligned_cols=116  Identities=17%  Similarity=0.181  Sum_probs=91.1

Q ss_pred             CCcccceeccCCCcc-----ceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHH
Q psy8729          21 AKKTYNIGLAEGTVT-----TKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESS   94 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~-----~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~   94 (190)
                      +..+|+|++++.+|.     ...+++...++++|++|| +.|||.|..+++.+++.++++.+.|  +++++|+.| +...
T Consensus         4 G~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~Vvgis~d-~~~~   80 (170)
T d1zofa1           4 TKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSID-SEQV   80 (170)
T ss_dssp             TSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESS-CHHH
T ss_pred             CCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCC--eeEeccccc-chhh
Confidence            456788888765542     334455545568999999 9999999999999999999999874  999999998 5556


Q ss_pred             HHHHHhCC------CCCcccCCchhHHHHHHHcCCC-----CCCeeeeeeecCCCceE
Q psy8729          95 YQSYLSGM------PWPAIPYASETRQSLASLYNVH-----GIPSLILLAVEAGGRLD  141 (190)
Q Consensus        95 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~l~~id~~g~~~  141 (190)
                      .+.|.+..      ....+++..|....+.++||+.     ..|++++  ||++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfv--ID~~G~I~  136 (170)
T d1zofa1          81 HFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFL--IDKNMKVR  136 (170)
T ss_dssp             HHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEE--EETTTEEE
T ss_pred             HHHHHhhhhhcccccCcccccccccccHHHHHcCCCccccceeEEEEE--EcCCCeEE
Confidence            66676654      2346777889899999999984     5788999  99999554

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.63  E-value=1.1e-15  Score=116.18  Aligned_cols=119  Identities=14%  Similarity=0.219  Sum_probs=94.0

Q ss_pred             CCcccceeccCCCccceeeeec-cCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYI-ESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~-~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      +..+|+|++.+.+|...+++.. .+|+++||+|| +.|||.|..+++.+++.+++|.++|  +++++||+|. .+..+.|
T Consensus         4 Gd~aPdF~l~t~~G~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g--~~vigiS~Ds-~~sh~~w   80 (237)
T d2zcta1           4 GERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDS-VFSHIKW   80 (237)
T ss_dssp             TSBCCCEEEEETTEEEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSC-HHHHHHH
T ss_pred             CCCCCCeEEEcCCCCEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCC--cceeeccCCc-HHHHHHH
Confidence            4568899998887765554432 37899999998 9999999999999999999999875  9999999995 3333333


Q ss_pred             H---hC--CCCCcccCCchhHHHHHHHcCC-------CCCCeeeeeeecCCCceEEEc
Q psy8729          99 L---SG--MPWPAIPYASETRQSLASLYNV-------HGIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        99 ~---~~--~~~~~~~~~~~~~~~~~~~~~v-------~~~P~~~l~~id~~g~~~i~~  144 (190)
                      .   +.  .....+|+..|.+..+++.||+       ...|++|+  ||++|+++.+.
T Consensus        81 ~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFI--IDpdG~Ir~~~  136 (237)
T d2zcta1          81 KEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFI--VDARGVIRTML  136 (237)
T ss_dssp             HHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEE--ECTTSBEEEEE
T ss_pred             hhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEE--ECCCCEEEEEE
Confidence            3   32  2345788899999999999998       46899999  99999765543

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.63  E-value=2.6e-16  Score=105.96  Aligned_cols=81  Identities=26%  Similarity=0.569  Sum_probs=66.5

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      .+.+++.+++..+.   .++++++|.||++||++|+.+.|.+.++++++.+.   +.++.|++|.               
T Consensus         4 V~~lt~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~d~---------------   62 (108)
T d1thxa_           4 VITITDAEFESEVL---KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDP---------------   62 (108)
T ss_dssp             EEECCGGGHHHHTT---TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTT---------------
T ss_pred             ceECCHHHHHHHHH---hCCCcEEEEEECCCCCCccccchHHHHHHHhcCCc---ceeceecccc---------------
Confidence            35567777665543   25678999999999999999999999999988764   7888888875               


Q ss_pred             cccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         106 AIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                              +..++++|+|.++||+++  +. +|
T Consensus        63 --------~~~l~~~~~I~~~Pt~~~--~~-~g   84 (108)
T d1thxa_          63 --------NPTTVKKYKVEGVPALRL--VK-GE   84 (108)
T ss_dssp             --------CHHHHHHTTCCSSSEEEE--EE-TT
T ss_pred             --------cHHHHHHhcccCCCEEEE--EE-CC
Confidence                    357899999999999999  85 67

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=6.7e-16  Score=104.47  Aligned_cols=67  Identities=28%  Similarity=0.663  Sum_probs=58.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.++++++++++.   +.++.|+.|.                       ...++++|+|
T Consensus        24 ~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---~~~~~i~~d~-----------------------~~~l~~~~~V   77 (111)
T d1xwaa_          24 SGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDE-----------------------CEDIAMEYNI   77 (111)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCEEEEEEECCcccCccccchhHHHHhhhcccc---eEEEEEEeec-----------------------CcchhhcCCC
Confidence            7899999999999999999999999999998754   7788888775                       3578899999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++||+++  + ++|+
T Consensus        78 ~~~Pt~~~--~-~~G~   90 (111)
T d1xwaa_          78 SSMPTFVF--L-KNGV   90 (111)
T ss_dssp             CSSSEEEE--E-ETTE
T ss_pred             ccccEEEE--E-ECCE
Confidence            99999999  7 5773

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.63  E-value=3.5e-16  Score=104.57  Aligned_cols=79  Identities=25%  Similarity=0.518  Sum_probs=64.9

Q ss_pred             eccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcc
Q psy8729          28 GLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI  107 (190)
Q Consensus        28 ~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~  107 (190)
                      .+++.+++..+.   .++++++|+||++||++|+.+.|.+.++.+++.+.   +.++.|+.|.                 
T Consensus         3 el~d~~f~~~v~---~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~v~~d~-----------------   59 (104)
T d1fb6a_           3 DVNDSSWKEFVL---ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDE-----------------   59 (104)
T ss_dssp             ECCTTTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTT-----------------
T ss_pred             ECchhhHHHHHH---cCCCcEEEEEEcCccCCccccCchhHHHHHhhcCc---cceeEEeccc-----------------
Confidence            356667766554   25778999999999999999999999999998764   6777788775                 


Q ss_pred             cCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         108 PYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                            +..++++|+|.++||+++  + ++|
T Consensus        60 ------~~~l~~~~~V~~~Pt~~~--~-~~G   81 (104)
T d1fb6a_          60 ------APGIATQYNIRSIPTVLF--F-KNG   81 (104)
T ss_dssp             ------CHHHHHHTTCCSSSEEEE--E-ETT
T ss_pred             ------chhhhhhcceeeeeEEEE--E-EcC
Confidence                  357899999999999999  7 578

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=4.7e-16  Score=104.61  Aligned_cols=80  Identities=31%  Similarity=0.581  Sum_probs=65.4

Q ss_pred             eeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCc
Q psy8729          27 IGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPA  106 (190)
Q Consensus        27 ~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~  106 (190)
                      +.+++.+++..+.   .++++++|+|||+||++|+.+.|.+.++++++..   ++.++.+++|.                
T Consensus         5 ~~lt~~~f~~~v~---~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~vd~d~----------------   62 (108)
T d2trxa_           5 IHLTDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQ----------------   62 (108)
T ss_dssp             EECCTTTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTT----------------
T ss_pred             eECCHHHHHHHHH---hCCCcEEEEEECCCCCCccccCcHHHHHHHHhhc---ceeeeeccccc----------------
Confidence            4567777765443   3678999999999999999999999999888765   48888888875                


Q ss_pred             ccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         107 IPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                             +..++++|++.++||+++  + ++|
T Consensus        63 -------~~~l~~~~~v~~~PT~~~--~-~~G   84 (108)
T d2trxa_          63 -------NPGTAPKYGIRGIPTLLL--F-KNG   84 (108)
T ss_dssp             -------CTTHHHHTTCCSSSEEEE--E-ETT
T ss_pred             -------hhhHHHHhCCCcEEEEEE--E-ECC
Confidence                   346889999999999999  7 478

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=8.3e-16  Score=111.06  Aligned_cols=115  Identities=10%  Similarity=0.120  Sum_probs=90.1

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      ..+..+|+|+|.+.+++...++++ +||++||.|| +.|||.|...++.|++++.++.    ++.+++|+.| +.+..++
T Consensus        19 ~vG~~APdF~L~~~~g~~vsLsd~-~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~----~~~vv~Is~d-~~~~~~~   92 (164)
T d1qxha_          19 QAGSKAQTFTLVAKDLSDVTLGQF-AGKRKVLNIFPSIDTGVCAASVRKFNQLATEID----NTVVLCISAD-LPFAQSR   92 (164)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGG-TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST----TEEEEEEESS-CHHHHTT
T ss_pred             CCCCCCCCeEEECCCCCEEeHHHh-CCCeEEEEEecchhcccchHHHHHHHHHHHhhc----cceeeeEEcC-CHHHHHH
Confidence            346678999999999988888887 7888888888 7899999999999988876653    5899999998 5667778


Q ss_pred             HHhCCCCCc-ccCCchhHHHHHHHcCCC---------CCCeeeeeeecCCCceE
Q psy8729          98 YLSGMPWPA-IPYASETRQSLASLYNVH---------GIPSLILLAVEAGGRLD  141 (190)
Q Consensus        98 ~~~~~~~~~-~~~~~~~~~~~~~~~~v~---------~~P~~~l~~id~~g~~~  141 (190)
                      |..+++... +....+.+..+.+.||+.         ..|++|+  ||++|+++
T Consensus        93 ~~~~~~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fv--ID~~G~I~  144 (164)
T d1qxha_          93 FCGAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVV--IDENDNVI  144 (164)
T ss_dssp             CCSSTTCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEE--ECTTSBEE
T ss_pred             HHHHhCCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEE--EcCCCEEE
Confidence            887776532 333355578899999973         2377899  99999543

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.60  E-value=5.3e-16  Score=104.23  Aligned_cols=80  Identities=28%  Similarity=0.582  Sum_probs=64.4

Q ss_pred             ccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCccc
Q psy8729          29 LAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP  108 (190)
Q Consensus        29 l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~  108 (190)
                      +++.+++..+.   .++++++|+|||+||++|+.+.|.+.++.+++.+.   +.++.|++|.                  
T Consensus         6 i~~~~f~~~v~---~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~d~------------------   61 (107)
T d1dbya_           6 VNDDTFKNVVL---ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDE------------------   61 (107)
T ss_dssp             ECHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTT------------------
T ss_pred             ecHHHHHHHHH---hCCCcEEEEEECCCCCCccccChHHHHHHHhhccc---ceEEEEeccc------------------
Confidence            44555554443   25789999999999999999999999998888754   7788888875                  


Q ss_pred             CCchhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         109 YASETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       109 ~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                           .+.++++|+|.++||+++  +. +|+.
T Consensus        62 -----~~~l~~~~~V~~~Pt~~~--~~-~G~~   85 (107)
T d1dbya_          62 -----SPNVASEYGIRSIPTIMV--FK-GGKK   85 (107)
T ss_dssp             -----CHHHHHHHTCCSSCEEEE--ES-SSSE
T ss_pred             -----chhHHHHhcccceEEEEE--EE-CCeE
Confidence                 357899999999999999  84 6743

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.58  E-value=1.3e-15  Score=110.69  Aligned_cols=115  Identities=16%  Similarity=0.226  Sum_probs=87.7

Q ss_pred             cccceeccCCCccceeeeeccCCcEEEEEEEcCCCh-hhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC---CCHHHHHHH
Q psy8729          23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCP-PCKAFTPQLIETYRKLKEDGYQFEIIFVSSD---RSESSYQSY   98 (190)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d---~~~~~~~~~   98 (190)
                      +.|+|+|.+.+|+...++.+ +||++||+||.+||+ .|...++.|.++++.+.+.|.++.+++|++|   ++++.+++|
T Consensus        10 ~~p~F~l~d~~G~~vsl~d~-~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~y   88 (172)
T d1xzoa1          10 EVEPFTFQNQDGKNVSLESL-KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKF   88 (172)
T ss_dssp             ECCCCEEECTTSCEEETGGG-TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHH
T ss_pred             cCCCeEEEcCCCCEEcHHHh-CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHHHH
Confidence            56889999999988888887 899999999999998 7999999999999999877778999999998   457889999


Q ss_pred             HhCCCCC--cccCCchh-----HHHHHHHcCCC-C----------CCeeeeeeecCCCce
Q psy8729          99 LSGMPWP--AIPYASET-----RQSLASLYNVH-G----------IPSLILLAVEAGGRL  140 (190)
Q Consensus        99 ~~~~~~~--~~~~~~~~-----~~~~~~~~~v~-~----------~P~~~l~~id~~g~~  140 (190)
                      ...++..  .+.++.+.     .....+.|++. .          .|.+++  ||++|++
T Consensus        89 ~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~l--iD~~G~i  146 (172)
T d1xzoa1          89 AANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYL--VGPDGKV  146 (172)
T ss_dssp             HTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEE--ECTTSEE
T ss_pred             HHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEE--EcCCCeE
Confidence            9877642  22222111     12223445432 2          257899  9999944

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.58  E-value=3.1e-15  Score=110.02  Aligned_cols=117  Identities=12%  Similarity=0.124  Sum_probs=93.4

Q ss_pred             Ccccceecc---CCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          22 KKTYNIGLA---EGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        22 ~~~~~~~l~---~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      .+.|+|.+.   ++.+.+..++++ +||++||+|| +.|||.|..+++.+++.++++.+.  ++++++||.| +.+..+.
T Consensus         5 ~~aP~F~~~a~~~g~~~~vsLsd~-kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~--~~~v~gIS~D-s~~sh~~   80 (186)
T d1n8ja_           5 TKIKPFKNQAFKNGEFIEVTEKDT-EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL--GVDVYSVSTD-THFTHKA   80 (186)
T ss_dssp             CBCCCCEEEEEETTEEEEEEHHHH-TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT--TEEEEEEESS-CHHHHHH
T ss_pred             CcCCCCEeeeeeCCeeEEEeHHHh-CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc--cEEEEecccc-CHHHHHH
Confidence            356677754   444444445555 7899999999 899999999999999999999987  4999999997 5677777


Q ss_pred             HHhCCC---CCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEEc
Q psy8729          98 YLSGMP---WPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        98 ~~~~~~---~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~~  144 (190)
                      |.++..   ...+|+..|.+..++++||+.      ..|.+|+  ||++|+++.+.
T Consensus        81 f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfi--ID~~G~Ir~~~  134 (186)
T d1n8ja_          81 WHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFV--VDPQGIIQAIE  134 (186)
T ss_dssp             HHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEE--ECTTSBEEEEE
T ss_pred             HhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEE--ECchheEEEEe
Confidence            877553   357888999999999999984      4678999  99999776554

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1e-15  Score=104.89  Aligned_cols=78  Identities=18%  Similarity=0.420  Sum_probs=62.6

Q ss_pred             CCcEEEEEEEcC-------CChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHH
Q psy8729          44 SCQVIGLYFSAH-------WCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQS  116 (190)
Q Consensus        44 ~~k~vlv~F~a~-------wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (190)
                      ++++++|+|||+       ||++|+.+.|.+.++++.+++   ++.++.|+++...+                ..|.+..
T Consensus        20 ~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~---~~~~~~vdv~~~~~----------------~~d~~~~   80 (119)
T d1woua_          20 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE---GCVFIYCQVGEKPY----------------WKDPNND   80 (119)
T ss_dssp             TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT---TEEEEEEECCCHHH----------------HHCTTCH
T ss_pred             CCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC---ceEEEEEECCCCcc----------------cchhhhh
Confidence            788999999995       999999999999999888764   48899999874321                1223567


Q ss_pred             HHHHcCCCCCCeeeeeeecCCCceEEEc
Q psy8729         117 LASLYNVHGIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus       117 ~~~~~~v~~~P~~~l~~id~~g~~~i~~  144 (190)
                      ++++|+|.++||+++  ++.++  ++..
T Consensus        81 l~~~~~V~~iPT~i~--~~~g~--~l~~  104 (119)
T d1woua_          81 FRKNLKVTAVPTLLK--YGTPQ--KLVE  104 (119)
T ss_dssp             HHHHHCCCSSSEEEE--TTSSC--EEEG
T ss_pred             HHHhCCeEEEEEEEE--EECCe--EEee
Confidence            899999999999999  87666  4443

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.9e-15  Score=109.07  Aligned_cols=120  Identities=18%  Similarity=0.233  Sum_probs=97.3

Q ss_pred             CCCCcccceecc---CCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHH
Q psy8729          19 KGAKKTYNIGLA---EGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESS   94 (190)
Q Consensus        19 ~~~~~~~~~~l~---~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~   94 (190)
                      ..+..+|+|+++   ++++....++++ .|+++||+|| +.||+.|..++..|++.+++|.+.  ++++++||.| +.+.
T Consensus         6 ~VG~~AP~F~l~~~~d~~~~~v~L~d~-~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~--g~~vigIS~D-~~~~   81 (197)
T d1qmva_           6 RIGKPAPDFKATAVVDGAFKEVKLSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL--GCEVLGVSVD-SQFT   81 (197)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEGGGG-TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT--TEEEEEEESS-CHHH
T ss_pred             cCCCcCCCCCCcceeCCCCcEEeHHHh-CCCeEEEEEecccccccchhhhHHHHHHHHHhccC--CcEEEEEecC-CHHH
Confidence            345667888664   566666666666 6899999999 999999999999999999999987  4999999998 5566


Q ss_pred             HHHHHhCC------CCCcccCCchhHHHHHHHcCCC------CCCeeeeeeecCCCceEEEc
Q psy8729          95 YQSYLSGM------PWPAIPYASETRQSLASLYNVH------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        95 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~l~~id~~g~~~i~~  144 (190)
                      .++|....      +-..+|+..|....+++.||+.      ..|.+|+  ||++|+++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfi--ID~~g~Ir~~~  141 (197)
T d1qmva_          82 HLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFI--IDGKGVLRQIT  141 (197)
T ss_dssp             HHHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEE--ECTTSBEEEEE
T ss_pred             HHhhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEE--ECCCCcEEEEE
Confidence            77887754      2357899999999999999984      4688999  99999765553

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.57  E-value=5.6e-15  Score=100.32  Aligned_cols=67  Identities=27%  Similarity=0.589  Sum_probs=57.4

Q ss_pred             ccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHc
Q psy8729          42 IESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLY  121 (190)
Q Consensus        42 ~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (190)
                      ..++++++|+||++||++|+.+.|.+.++.+.++    ++.++.|+.|.                       ...++++|
T Consensus        25 ~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~----~~~~~~vd~~~-----------------------~~~l~~~~   77 (114)
T d1xfla_          25 NESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP----NVLFLKVDTDE-----------------------LKSVASDW   77 (114)
T ss_dssp             HHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS----SEEEEEEETTT-----------------------SHHHHHHT
T ss_pred             hccCCeEEEEEEcCCCCCccccccchhhhccccc----ccceeEEEeee-----------------------ceeecccc
Confidence            3478999999999999999999999999988874    36777777765                       45789999


Q ss_pred             CCCCCCeeeeeeecCCC
Q psy8729         122 NVHGIPSLILLAVEAGG  138 (190)
Q Consensus       122 ~v~~~P~~~l~~id~~g  138 (190)
                      +|.++||+++  + ++|
T Consensus        78 ~V~~~Pt~~~--~-~~G   91 (114)
T d1xfla_          78 AIQAMPTFMF--L-KEG   91 (114)
T ss_dssp             TCCSSSEEEE--E-ETT
T ss_pred             ceeeeEEEEE--E-ECC
Confidence            9999999999  7 578

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.56  E-value=3.8e-15  Score=100.91  Aligned_cols=76  Identities=20%  Similarity=0.365  Sum_probs=62.0

Q ss_pred             ccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchh
Q psy8729          34 VTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASET  113 (190)
Q Consensus        34 ~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~  113 (190)
                      ++..+.....++++++|+||++||++|+.+.|.++++++++.++   +.++.|++|.                       
T Consensus        13 fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~-----------------------   66 (112)
T d1ep7a_          13 WDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDA-----------------------   66 (112)
T ss_dssp             HHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTT-----------------------
T ss_pred             HHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccce---EEEEEeeccc-----------------------
Confidence            33334333346889999999999999999999999999998653   7888888875                       


Q ss_pred             HHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         114 RQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       114 ~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                      ...++++|+|.++||+++  + ++|
T Consensus        67 ~~~l~~~~~v~~~Pt~~~--~-~~G   88 (112)
T d1ep7a_          67 VAAVAEAAGITAMPTFHV--Y-KDG   88 (112)
T ss_dssp             THHHHHHHTCCBSSEEEE--E-ETT
T ss_pred             cccccccccccCCCEEEE--E-ECC
Confidence            457899999999999999  7 578

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.56  E-value=7.3e-15  Score=99.59  Aligned_cols=69  Identities=30%  Similarity=0.629  Sum_probs=58.2

Q ss_pred             eeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHH
Q psy8729          40 SYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLAS  119 (190)
Q Consensus        40 ~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (190)
                      ....+++++||+||++||++|+.+.|.+.++++++.    +..++.|+.|.                       ...+++
T Consensus        21 ~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~d~-----------------------~~~l~~   73 (113)
T d1ti3a_          21 KGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP----NVTFLKVDVDE-----------------------LKAVAE   73 (113)
T ss_dssp             HHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS----SEEEEEEETTT-----------------------CHHHHH
T ss_pred             HHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCC----CceEEeeeeec-----------------------cccccc
Confidence            333478999999999999999999999999998874    36787787765                       357899


Q ss_pred             HcCCCCCCeeeeeeecCCC
Q psy8729         120 LYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       120 ~~~v~~~P~~~l~~id~~g  138 (190)
                      +|+|.++||+++  +. +|
T Consensus        74 ~~~I~~~Pt~~~--~k-~G   89 (113)
T d1ti3a_          74 EWNVEAMPTFIF--LK-DG   89 (113)
T ss_dssp             HHHCSSTTEEEE--EE-TT
T ss_pred             cCeecccceEEE--EE-CC
Confidence            999999999999  74 78

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.56  E-value=3.8e-15  Score=100.94  Aligned_cols=80  Identities=16%  Similarity=0.350  Sum_probs=61.7

Q ss_pred             ccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCccc
Q psy8729          29 LAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIP  108 (190)
Q Consensus        29 l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~  108 (190)
                      ++..++...+...  +.++++|+||++||++|+.+.|.+.++++++++    +.++.++.+.+                 
T Consensus        11 ~~~d~f~~~l~~~--~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~----v~~~~vd~~~~-----------------   67 (112)
T d1f9ma_          11 VNKDTFWPIVKAA--GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQE-----------------   67 (112)
T ss_dssp             ECTTTHHHHHHTC--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSST-----------------
T ss_pred             eCHHHHHHHHHHc--CCCEEEEEEEcCCCcchHHHHHHHhhhcccccc----ceeeccccccc-----------------
Confidence            4444454433322  567899999999999999999999999998853    56777776532                 


Q ss_pred             CCchhHHHHHHHcCCCCCCeeeeeeecCCCc
Q psy8729         109 YASETRQSLASLYNVHGIPSLILLAVEAGGR  139 (190)
Q Consensus       109 ~~~~~~~~~~~~~~v~~~P~~~l~~id~~g~  139 (190)
                           .+.++++|+|.++||+++  + ++|+
T Consensus        68 -----~~~l~~~~~V~~~Pt~~~--~-k~G~   90 (112)
T d1f9ma_          68 -----NKTLAKELGIRVVPTFKI--L-KENS   90 (112)
T ss_dssp             -----THHHHHHHCCSSSSEEEE--E-ETTE
T ss_pred             -----chhhHhheeeccCCEEEE--E-ECCE
Confidence                 368899999999999999  8 5783

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.7e-15  Score=104.39  Aligned_cols=66  Identities=17%  Similarity=0.289  Sum_probs=58.1

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|.||++||++|+.+.|.+.++++++.+.   +.++.|++|..                       +.++++|+|
T Consensus        21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~VDvd~~-----------------------~~la~~~~I   74 (137)
T d1qgva_          21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEV-----------------------PDFNKMYEL   74 (137)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC-----------------------CTTTTSSCS
T ss_pred             CCCEEEEEEECCCCccchhcChHHHHHHHHhhcc---ceEEEeecccc-----------------------chhhhhcCe
Confidence            5789999999999999999999999999999754   88888888753                       467899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++||+++  +. +|
T Consensus        75 ~~~PT~~~--f~-~g   86 (137)
T d1qgva_          75 YDPCTVMF--FF-RN   86 (137)
T ss_dssp             CSSCEEEE--EE-TT
T ss_pred             eeEEEEEE--Ee-CC
Confidence            99999999  74 55

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=2.7e-15  Score=102.14  Aligned_cols=73  Identities=19%  Similarity=0.368  Sum_probs=54.1

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      +||+++|+|||+||++|+.+.|.+....+..... .++..+.+.++.+.                   +....+++.|+|
T Consensus        21 ~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~-------------------~~~~~l~~~~~v   80 (117)
T d2fwha1          21 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL-ADTVLLQANVTAND-------------------AQDVALLKHLNV   80 (117)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHT-TTSEEEEEECTTCC-------------------HHHHHHHHHTTC
T ss_pred             CCCeEEEEEecccCCcccccchhHHhHHHHHHhc-cceEEEecccccch-------------------hHHHHHHhhheh
Confidence            6899999999999999999999884333322222 23455555554322                   125788999999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++||+++  +|++|
T Consensus        81 ~~~Pt~~~--~~~~G   93 (117)
T d2fwha1          81 LGLPTILF--FDGQG   93 (117)
T ss_dssp             CSSSEEEE--ECTTS
T ss_pred             hhceEEEE--EeCCC
Confidence            99999999  99999

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.54  E-value=5.9e-15  Score=100.12  Aligned_cols=68  Identities=21%  Similarity=0.453  Sum_probs=58.6

Q ss_pred             eccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH
Q psy8729          41 YIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL  120 (190)
Q Consensus        41 ~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (190)
                      .+.++++++|+|||+||++|+.+.|.|.+++++++    ++.++.|+.|.                       ...+++.
T Consensus        22 ~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~-----------------------~~~l~~~   74 (113)
T d1r26a_          22 IMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDADN-----------------------NSEIVSK   74 (113)
T ss_dssp             HHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTT-----------------------CHHHHHH
T ss_pred             HHcCCCeEEEEEECCCCccchhhceeccccccccc----ccccccccccc-----------------------chhhHHH
Confidence            33478899999999999999999999999998874    47888888875                       3578999


Q ss_pred             cCCCCCCeeeeeeecCCC
Q psy8729         121 YNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       121 ~~v~~~P~~~l~~id~~g  138 (190)
                      |||.++||+++  + ++|
T Consensus        75 ~~V~~~Pt~~~--~-~~G   89 (113)
T d1r26a_          75 CRVLQLPTFII--A-RSG   89 (113)
T ss_dssp             TTCCSSSEEEE--E-ETT
T ss_pred             ccccCCCEEEE--E-ECC
Confidence            99999999999  7 577

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.5e-15  Score=98.37  Aligned_cols=65  Identities=17%  Similarity=0.305  Sum_probs=56.5

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+||++||++|+.+.|.+.++++++++    +.++.+++|.                       .+.+++.|+|
T Consensus        20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~----~~f~~vd~d~-----------------------~~~l~~~~~v   72 (107)
T d1gh2a_          20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ----AVFLEVDVHQ-----------------------CQGTAATNNI   72 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT----SEEEEEETTT-----------------------SHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCCCccccchhhhcccccccc----cccccccccc-----------------------chhhhhhcCc
Confidence            578899999999999999999999999998753    6677777775                       4578899999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++||+++  + ++|
T Consensus        73 ~~~Pt~~~--~-~~G   84 (107)
T d1gh2a_          73 SATPTFQF--F-RNK   84 (107)
T ss_dssp             CSSSEEEE--E-ETT
T ss_pred             eeceEEEE--E-ECC
Confidence            99999999  7 678

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.4e-15  Score=104.15  Aligned_cols=83  Identities=24%  Similarity=0.474  Sum_probs=65.8

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCC
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPW  104 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~  104 (190)
                      ..+.+++.+++..+    .+++.++|.||++||++|+.+.|.+.++.+.+.+.+..+.++.|+++.              
T Consensus         8 ~V~~l~~~~f~~~l----~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--------------   69 (120)
T d1meka_           8 HVLVLRKSNFAEAL----AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE--------------   69 (120)
T ss_dssp             TEEECCTTTHHHHH----HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT--------------
T ss_pred             CeEEcCHHHHHHHH----hcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeecccccc--------------
Confidence            34556666665433    267899999999999999999999999999998765567777777764              


Q ss_pred             CcccCCchhHHHHHHHcCCCCCCeeeeeeecC
Q psy8729         105 PAIPYASETRQSLASLYNVHGIPSLILLAVEA  136 (190)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~  136 (190)
                               ...++.+|+|.++||+++  +.+
T Consensus        70 ---------~~~l~~~~~i~~~Pt~~~--~~~   90 (120)
T d1meka_          70 ---------ESDLAQQYGVRGYPTIKF--FRN   90 (120)
T ss_dssp             ---------CCSSHHHHTCCSSSEEEE--EES
T ss_pred             ---------chhHHHHhCCccCCeEEE--EEC
Confidence                     246788999999999999  743

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.6e-15  Score=97.93  Aligned_cols=66  Identities=27%  Similarity=0.485  Sum_probs=55.8

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++++++|+|||+||++|+.+.|.+.++.+.+++    ..++.++.|.                       ...+++.|+|
T Consensus        19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~d~-----------------------~~~~~~~~~V   71 (105)
T d2ifqa1          19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDD-----------------------CQDVASECEV   71 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCEEEEEEEcCCccchhhhhhhhhhhcccccc----ceeeeccccc-----------------------CHhHHHHcCc
Confidence            578999999999999999999999999888753    4567777765                       3578899999


Q ss_pred             CCCCeeeeeeecCCCc
Q psy8729         124 HGIPSLILLAVEAGGR  139 (190)
Q Consensus       124 ~~~P~~~l~~id~~g~  139 (190)
                      .++||+++  + ++|+
T Consensus        72 ~~~Pt~~~--~-~~G~   84 (105)
T d2ifqa1          72 KCMPTFQF--F-KKGQ   84 (105)
T ss_dssp             CBSSEEEE--E-ETTE
T ss_pred             eEEEEEEE--E-ECCE
Confidence            99999999  7 5783

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.53  E-value=2.9e-14  Score=103.42  Aligned_cols=116  Identities=18%  Similarity=0.199  Sum_probs=92.9

Q ss_pred             ccceecc----CCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          24 TYNIGLA----EGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        24 ~~~~~l~----~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      +|+|.|.    ++++.+..++++..++++||+|| +.|||.|..++..+++.+++|.+.|  +.+++||.| +.+..++|
T Consensus         2 APdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g--~~vigIS~D-~~~~~~~~   78 (170)
T d2h01a1           2 APSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVD-SKFTHLAW   78 (170)
T ss_dssp             CCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESS-CHHHHHHH
T ss_pred             CCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCC--eeEecccCC-cHHHHHhH
Confidence            5777776    45555666777655689999999 9999999999999999999999874  999999998 56667788


Q ss_pred             HhCCC------CCcccCCchhHHHHHHHcCCC-----CCCeeeeeeecCCCceEEEc
Q psy8729          99 LSGMP------WPAIPYASETRQSLASLYNVH-----GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        99 ~~~~~------~~~~~~~~~~~~~~~~~~~v~-----~~P~~~l~~id~~g~~~i~~  144 (190)
                      .++..      -..+|++.|.+..+.+.||+.     ..+++++  ||++|+++...
T Consensus        79 ~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfi--Id~~G~I~~~~  133 (170)
T d2h01a1          79 KKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVL--IDKQGVVQHLL  133 (170)
T ss_dssp             HTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEE--ECTTSBEEEEE
T ss_pred             hhhhhhhccccccCCceeEcCccHHHHHhCCccccccceeeeEE--EcCCCeEEEEE
Confidence            76542      246788899999999999983     4579999  99999665544

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.52  E-value=1.9e-15  Score=97.27  Aligned_cols=65  Identities=17%  Similarity=0.370  Sum_probs=53.1

Q ss_pred             CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCC
Q psy8729          45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVH  124 (190)
Q Consensus        45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  124 (190)
                      +|+.|++|||+||++|+.+.|.+.++++.+...   +.++.+..|.                       +.+++++|+|.
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~~~~d~-----------------------~~~la~~~~V~   55 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVME-----------------------NPQKAMEYGIM   55 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSS-----------------------SCCTTTSTTTC
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccc---cccccccccc-----------------------cccccccCCce
Confidence            578899999999999999999999998887654   6677776664                       24567899999


Q ss_pred             CCCeeeeeeecCCC
Q psy8729         125 GIPSLILLAVEAGG  138 (190)
Q Consensus       125 ~~P~~~l~~id~~g  138 (190)
                      ++||+++   +++|
T Consensus        56 ~~Pt~~i---~~~g   66 (85)
T d1fo5a_          56 AVPTIVI---NGDV   66 (85)
T ss_dssp             CSSEEEE---TTEE
T ss_pred             EeeEEEE---ECCc
Confidence            9999766   5677

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=3.1e-14  Score=97.27  Aligned_cols=82  Identities=23%  Similarity=0.433  Sum_probs=67.2

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCC
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPW  104 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~  104 (190)
                      ..+.+++.+++..+    .+++.++|.||++||++|+.+.|.+.++++.+.+.  ++.+..|+++.              
T Consensus        11 ~v~~lt~~~f~~~i----~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~--~v~~~~vd~~~--------------   70 (119)
T d2b5ea4          11 AVVKLATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--NITLAQIDCTE--------------   70 (119)
T ss_dssp             SCEECCTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT--TCEEEEEETTT--------------
T ss_pred             ccEEcCHHHHHHHH----hcCCeEEEEEECCccCcccccchhhhhhhhhhccc--ceeeeeeeccc--------------
Confidence            45667777776544    36788999999999999999999999999998754  47788888774              


Q ss_pred             CcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         105 PAIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                               ...++++|+|.++|++++  + ++|
T Consensus        71 ---------~~~l~~~~~v~~~Pti~~--f-~~g   92 (119)
T d2b5ea4          71 ---------NQDLCMEHNIPGFPSLKI--F-KNS   92 (119)
T ss_dssp             ---------CHHHHHHTTCCSSSEEEE--E-ETT
T ss_pred             ---------hHHHHHHhccccCCeEEE--E-ECC
Confidence                     358899999999999999  7 455

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.52  E-value=2.9e-14  Score=102.67  Aligned_cols=115  Identities=12%  Similarity=0.089  Sum_probs=86.9

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      ..+..+|+|+|.+.+++...++++ +||++||.|| +.|||.|...++.+++.++++.    ++.+++|+.| +....++
T Consensus        17 ~vG~~aPdF~L~~~~g~~vsLsd~-~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~----~~~vv~Is~d-~~~~~~~   90 (163)
T d1psqa_          17 QVGDKALDFSLTTTDLSKKSLADF-DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD----NTVVLTVSMD-LPFAQKR   90 (163)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGG-TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT----TEEEEEEESS-CHHHHHH
T ss_pred             CCCCCCCCeEEECCCCCEEehHHh-CCcEEEEEeccccccccchhhHHHHHHHHHhhc----ccceEEEEec-cHHHHHH
Confidence            346778999999999888888887 7888889888 8899999999999987766663    4889999987 5566677


Q ss_pred             HHhCCCCCcccCC-chhHHHHHHHcCCCC------CCeeeeeeecCCCceE
Q psy8729          98 YLSGMPWPAIPYA-SETRQSLASLYNVHG------IPSLILLAVEAGGRLD  141 (190)
Q Consensus        98 ~~~~~~~~~~~~~-~~~~~~~~~~~~v~~------~P~~~l~~id~~g~~~  141 (190)
                      +..+.+....+.. .+.+..+.+.||+..      .+++++  ||++|+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fv--ID~~G~I~  139 (163)
T d1psqa_          91 WCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFV--LDTDNTIR  139 (163)
T ss_dssp             HHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEE--ECTTCBEE
T ss_pred             HHHHcCCcceeeeccccchhHHHhheeecccccceeEEEEE--ECCCCEEE
Confidence            7776654443333 334678899999742      235789  99999553

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.51  E-value=8.3e-15  Score=105.89  Aligned_cols=114  Identities=15%  Similarity=0.121  Sum_probs=82.1

Q ss_pred             CCCCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHH
Q psy8729          19 KGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQS   97 (190)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~   97 (190)
                      ..+.++|+|+|.+.+++...++++ +||++||.|| +.|||.|...++.+++.+++   .  ++++++|+.| +....++
T Consensus        18 ~iG~~aP~F~L~~~~g~~v~L~d~-~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~---~--g~~vv~Is~d-~~~~~~~   90 (166)
T d1xvqa_          18 AVGSPAPAFTLTGGDLGVISSDQF-RGKSVLLNIFPSVDTPVCATSVRTFDERAAA---S--GATVLCVSKD-LPFAQKR   90 (166)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGG-TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---T--TCEEEEEESS-CHHHHTT
T ss_pred             CCcCCCCCeEEECCCCCEEehHHh-CCcEEEEEeeecccccccHHHHHHHhhhccc---c--cccccccccc-hHHHHHH
Confidence            346778999999999988888887 7889999999 66889999998888765443   3  3789999987 4566777


Q ss_pred             HHhCCCCCcccCCchhHHHHHHHcCCC---------CCCeeeeeeecCCCceE
Q psy8729          98 YLSGMPWPAIPYASETRQSLASLYNVH---------GIPSLILLAVEAGGRLD  141 (190)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~P~~~l~~id~~g~~~  141 (190)
                      |.++++........+....+.+.||+.         ..|++|+  ||++|+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fv--ID~~G~I~  141 (166)
T d1xvqa_          91 FCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVV--IGADGNVA  141 (166)
T ss_dssp             CC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEE--ECTTSBEE
T ss_pred             HHHHhCCcccccccchhHHHHHHhCeeeccCcccCceeeEEEE--EeCCCEEE
Confidence            777776544444445566778888763         2468899  99999543

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.51  E-value=3.4e-14  Score=102.43  Aligned_cols=116  Identities=13%  Similarity=0.094  Sum_probs=91.0

Q ss_pred             CCCCCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          18 SKGAKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      ...+..+|+|+|.+.++....++++ .||++||.|| +.|||.|..+++.|++.++++.    +..+++||.| +.+..+
T Consensus        16 p~vG~~APdF~L~d~~g~~v~Lsd~-~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~----~~~vi~iS~d-~~~~~~   89 (164)
T d1q98a_          16 PQVGEIVENFILVGNDLADVALNDF-ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS----NTIVLCISAD-LPFAQA   89 (164)
T ss_dssp             CCTTCBCCCCEEECTTSCEEEGGGG-TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST----TEEEEEEESS-CHHHHT
T ss_pred             CCCCCCCCCcEEECCCCCEEeehhh-CCcEEEEEecCccccCcccHHHHHHHHHHHHhc----cceEEeecCC-cHHHHH
Confidence            3456788999999999888888877 7889999999 6688999999999999888884    3789999987 666778


Q ss_pred             HHHhCCCCCcccCCch-hHHHHHHHcCCC-------C--CCeeeeeeecCCCceE
Q psy8729          97 SYLSGMPWPAIPYASE-TRQSLASLYNVH-------G--IPSLILLAVEAGGRLD  141 (190)
Q Consensus        97 ~~~~~~~~~~~~~~~~-~~~~~~~~~~v~-------~--~P~~~l~~id~~g~~~  141 (190)
                      +|..+++...+....+ .+..+.+.|++.       +  .|++|+  ||++|+++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fv--ID~~G~I~  142 (164)
T d1q98a_          90 RFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIV--LDEQNNVL  142 (164)
T ss_dssp             TCTTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEE--ECTTSBEE
T ss_pred             HHHHHhCCccccccccccchhHHHhhceecccCccccCcccEEEE--ECCCCEEE
Confidence            8888887654444433 356788888863       2  378899  99999553

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.51  E-value=1.8e-14  Score=95.94  Aligned_cols=67  Identities=22%  Similarity=0.463  Sum_probs=56.8

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++|+||++||++|+.+.|.+.++++++++    ..++.+++|.                       ...++++|+
T Consensus        16 ~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~----~~~~~vd~d~-----------------------~~~~~~~~~   68 (103)
T d1syra_          16 SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVDE-----------------------VSEVTEKEN   68 (103)
T ss_dssp             HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTT-----------------------THHHHHHTT
T ss_pred             hCCCcEEEEEeCCcccCcccccccchhhhhcccc----eEEEeecccc-----------------------Ccceeeeee
Confidence            4678999999999999999999999999998853    4577777764                       357899999


Q ss_pred             CCCCCeeeeeeecCCCc
Q psy8729         123 VHGIPSLILLAVEAGGR  139 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~  139 (190)
                      |.++||+++  + ++|+
T Consensus        69 V~~~Pt~i~--~-k~G~   82 (103)
T d1syra_          69 ITSMPTFKV--Y-KNGS   82 (103)
T ss_dssp             CCSSSEEEE--E-ETTE
T ss_pred             eecceEEEE--E-ECCE
Confidence            999999999  7 5783

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9e-14  Score=104.58  Aligned_cols=118  Identities=10%  Similarity=0.069  Sum_probs=92.1

Q ss_pred             CCcccceeccCCCccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHH
Q psy8729          21 AKKTYNIGLAEGTVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYL   99 (190)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~   99 (190)
                      +..+|+|++.+..|+ ..++++..++++|++|| +.|||.|..++..+++.++++.+.|  +++++||.|. .+....|.
T Consensus         4 Gd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g--~~v~giS~Ds-~~sh~~~~   79 (220)
T d1prxa_           4 GDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDS-VEDHLAWS   79 (220)
T ss_dssp             TCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSC-HHHHHHHH
T ss_pred             CCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhccc--ceeecccccc-ccchhhhh
Confidence            457889999888876 34444446789999999 8999999999999999999999874  9999999984 33333332


Q ss_pred             hC-------C--CCCcccCCchhHHHHHHHcCCC------------CCCeeeeeeecCCCceEEEc
Q psy8729         100 SG-------M--PWPAIPYASETRQSLASLYNVH------------GIPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus       100 ~~-------~--~~~~~~~~~~~~~~~~~~~~v~------------~~P~~~l~~id~~g~~~i~~  144 (190)
                      +.       .  .-..+|+..|.+..++++||+.            ..+.+|+  ||++|+++...
T Consensus        80 ~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFI--ID~~g~Ir~~~  143 (220)
T d1prxa_          80 KDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFV--FGPDKKLKLSI  143 (220)
T ss_dssp             HHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEE--ECTTSBEEEEE
T ss_pred             hhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEE--EcCccceeEEE
Confidence            21       1  1256888899999999999984            4578999  99999776554

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=1.2e-14  Score=102.09  Aligned_cols=84  Identities=15%  Similarity=0.237  Sum_probs=65.3

Q ss_pred             cccceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCC
Q psy8729          23 KTYNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGM  102 (190)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~  102 (190)
                      ....+.|++.+++..+.+   .++.++|.||++||++|+.+.|.+.++++.|.+.+..+.++.++.+             
T Consensus        11 ~~~V~~l~~~nf~~~v~~---~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~-------------   74 (140)
T d2b5ea1          11 DSSVFQLVGKNHDEIVND---PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT-------------   74 (140)
T ss_dssp             SCSEEEECTTTHHHHHHC---TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG-------------
T ss_pred             CCCcEEecCcCHHHHHhc---CCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc-------------
Confidence            456777888888776653   4678999999999999999999999999999876444555444432             


Q ss_pred             CCCcccCCchhHHHHHHHcCCCCCCeeeeeeecC
Q psy8729         103 PWPAIPYASETRQSLASLYNVHGIPSLILLAVEA  136 (190)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~  136 (190)
                                  ..++..|+|.++||+++  +.+
T Consensus        75 ------------~~~~~~~~v~~~Ptl~~--f~~   94 (140)
T d2b5ea1          75 ------------ENDVRGVVIEGYPTIVL--YPG   94 (140)
T ss_dssp             ------------GCCCSSCCCSSSSEEEE--ECC
T ss_pred             ------------chhccccccccCCeEEE--EEC
Confidence                        23467899999999999  753

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.48  E-value=1e-14  Score=99.82  Aligned_cols=67  Identities=15%  Similarity=0.278  Sum_probs=52.8

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ..++++|.||++|||+|+.+.|.|.++.++|++.  ++.+..|+.|.                       +..+++.|+|
T Consensus        29 ~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~--~~~~~~Vd~d~-----------------------~~~l~~~~~V   83 (119)
T d2es7a1          29 GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQF--DWQVAVADLEQ-----------------------SEAIGDRFNV   83 (119)
T ss_dssp             CSEEEEECCCSCC----CCHHHHHHHHHHTCTTS--CCEEEEECHHH-----------------------HHHHHHTTTC
T ss_pred             CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCC--ceEEEEEECCC-----------------------CHHHHHhcCc
Confidence            5778999999999999999999999999998753  36666665542                       5789999999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++||+++  + ++|
T Consensus        84 ~~~Pt~~~--~-~~G   95 (119)
T d2es7a1          84 RRFPATLV--F-TDG   95 (119)
T ss_dssp             CSSSEEEE--E-SCC
T ss_pred             CcceEEEE--E-EcC
Confidence            99999999  8 578

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.47  E-value=4.8e-14  Score=95.72  Aligned_cols=74  Identities=19%  Similarity=0.479  Sum_probs=56.1

Q ss_pred             ccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHc
Q psy8729          42 IESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLY  121 (190)
Q Consensus        42 ~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (190)
                      +.+++.++|+||++||++|+.+.|.+.++.+++...     +..++++....                 .+..+.+.++|
T Consensus        23 i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~-----v~~v~~~~~~~-----------------~~~~~~~~~~~   80 (115)
T d1zmaa1          23 LDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH-----IYFINSEEPSQ-----------------LNDLQAFRSRY   80 (115)
T ss_dssp             HHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC-----CEEEETTCGGG-----------------HHHHHHHHHHH
T ss_pred             HhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh-----hhhheeecccc-----------------ccccccccccc
Confidence            347888999999999999999999999998887543     44455553211                 01145788999


Q ss_pred             CCCCCCeeeeeeecCCCce
Q psy8729         122 NVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       122 ~v~~~P~~~l~~id~~g~~  140 (190)
                      +|.++||+++  +. +|+.
T Consensus        81 ~V~~~PTli~--~~-~gk~   96 (115)
T d1zmaa1          81 GIPTVPGFVH--IT-DGQI   96 (115)
T ss_dssp             TCCSSCEEEE--EE-TTEE
T ss_pred             ccccccEEEE--EE-CCEE
Confidence            9999999999  84 7843

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.46  E-value=1.5e-13  Score=91.82  Aligned_cols=70  Identities=19%  Similarity=0.191  Sum_probs=54.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhc-CCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKED-GYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .++++++.||++||++|+.+.|.+++++...... +..+.+..++.+.                       .+.++++|+
T Consensus        14 ~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~-----------------------~~~l~~~~~   70 (107)
T d1a8la2          14 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-----------------------YPEWADQYN   70 (107)
T ss_dssp             CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG-----------------------CHHHHHHTT
T ss_pred             CCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc-----------------------ccccccccc
Confidence            4556677899999999999999999998765432 3356777676653                       357899999


Q ss_pred             CCCCCeeeeeeecCCCc
Q psy8729         123 VHGIPSLILLAVEAGGR  139 (190)
Q Consensus       123 v~~~P~~~l~~id~~g~  139 (190)
                      |.++||+++  + ++|+
T Consensus        71 V~~vPTi~i--~-~~G~   84 (107)
T d1a8la2          71 VMAVPKIVI--Q-VNGE   84 (107)
T ss_dssp             CCSSCEEEE--E-ETTE
T ss_pred             cccceEEEE--E-eCCe
Confidence            999998766  4 6783

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.45  E-value=1.9e-14  Score=92.62  Aligned_cols=62  Identities=13%  Similarity=0.209  Sum_probs=50.8

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCC
Q psy8729          48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIP  127 (190)
Q Consensus        48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P  127 (190)
                      .++.||++||++|+.+.|.+++++++++++   +.+..+++|.                       +..++++|+|.++|
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~-----------------------~~~l~~~~~V~~~P   57 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMV-----------------------DREKAIEYGLMAVP   57 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTT-----------------------CGGGGGGTCSSCSS
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccccccc---cccccccccc-----------------------chhhHHhcCceEeC
Confidence            456699999999999999999999998653   7787787775                       35678999999999


Q ss_pred             eeeeeeecCCC
Q psy8729         128 SLILLAVEAGG  138 (190)
Q Consensus       128 ~~~l~~id~~g  138 (190)
                      |+++   +..+
T Consensus        58 t~~~---~~~~   65 (85)
T d1nhoa_          58 AIAI---NGVV   65 (85)
T ss_dssp             EEEE---TTTE
T ss_pred             EEEE---CCcE
Confidence            8755   5455

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.44  E-value=2.1e-13  Score=93.48  Aligned_cols=87  Identities=15%  Similarity=0.111  Sum_probs=68.4

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWP  105 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~  105 (190)
                      .+.|++.+++..+.    +.+.+||.|||+||++|++  |++.++++.+.+.+.++.+..|++++..             
T Consensus         4 ~v~L~~~nFd~~v~----~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~-------------   64 (122)
T d2c0ga2           4 CVDLDELSFEKTVE----RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYG-------------   64 (122)
T ss_dssp             CEECCTTTHHHHHT----TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSST-------------
T ss_pred             eEEcChHhHHHHHh----cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccc-------------
Confidence            46788888876664    6789999999999999995  9999999998876667888888875321             


Q ss_pred             cccCCchhHHHHHHHcCC--CCCCeeeeeeecCCC
Q psy8729         106 AIPYASETRQSLASLYNV--HGIPSLILLAVEAGG  138 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~v--~~~P~~~l~~id~~g  138 (190)
                           ...+..+++.|++  .++||+++  +.+++
T Consensus        65 -----~~~n~~l~~~~~i~~~~~PTi~~--f~~g~   92 (122)
T d2c0ga2          65 -----ELENKALGDRYKVDDKNFPSIFL--FKGNA   92 (122)
T ss_dssp             -----TCTTHHHHHHTTCCTTSCCEEEE--ESSSS
T ss_pred             -----cccCHHHHHHhhcccCCCCcEEE--EeCCc
Confidence                 0115789999988  57999999  86544

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=2e-14  Score=100.05  Aligned_cols=67  Identities=13%  Similarity=0.280  Sum_probs=57.0

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ..++++|.||++|||+|+.+.|.|.++.+++.+.  .+.+..|++|.                       +..+++.|+|
T Consensus        35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~--~~~~a~Vd~d~-----------------------~~~la~~~~V   89 (132)
T d2hfda1          35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQ-----------------------SEAIGDRFGV   89 (132)
T ss_dssp             SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTS--CEEEEEECHHH-----------------------HHHHHHHHTC
T ss_pred             CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCC--cceeEEEEecC-----------------------CHHHHHhhcc
Confidence            4678899999999999999999999999998765  36666666543                       5799999999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++||+++  + ++|
T Consensus        90 ~~~PT~~~--~-~~G  101 (132)
T d2hfda1          90 FRFPATLV--F-TGG  101 (132)
T ss_dssp             CSCCEEEE--E-ETT
T ss_pred             CcceeEEE--E-EcC
Confidence            99999999  8 678

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.39  E-value=6.9e-13  Score=99.43  Aligned_cols=118  Identities=14%  Similarity=0.170  Sum_probs=91.4

Q ss_pred             CCCcccceeccCC--CccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          20 GAKKTYNIGLAEG--TVTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        20 ~~~~~~~~~l~~~--~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      -+..+|+|++.+.  .++..+.+.+ +++++||+|| +.|||.|..++..+++.+.++.+.  ++++++||.| +.+..+
T Consensus         4 iGd~aPdF~l~~~~~~g~i~l~d~~-~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~--~~~vigiS~D-s~~sh~   79 (219)
T d1xcca_           4 LGATFPNFTAKASGIDGDFELYKYI-ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL--NCKLIGFSCN-SKESHD   79 (219)
T ss_dssp             TTCBCCCCEECBTTCSSCEEHHHHT-TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT--TEEEEEEESS-CHHHHH
T ss_pred             CCCCCCCcEeeccCCCCcEEeHHHc-CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhccc--ceEEEeecCc-cHhHHh
Confidence            3557788888744  3443344433 7999999999 999999999999999999999987  4999999998 555555


Q ss_pred             HHHhCC------CCCcccCCchhHHHHHHHcCCC------------CCCeeeeeeecCCCceEEE
Q psy8729          97 SYLSGM------PWPAIPYASETRQSLASLYNVH------------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        97 ~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------------~~P~~~l~~id~~g~~~i~  143 (190)
                      .|.+..      +-..+|+..|.+..+++.||+.            ....+|+  ||++|+++..
T Consensus        80 ~w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFi--IDp~g~Ir~~  142 (219)
T d1xcca_          80 KWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFF--ISPEKKIKAT  142 (219)
T ss_dssp             HHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEE--ECTTSBEEEE
T ss_pred             HHhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEE--EcCcceEEEE
Confidence            565532      2357888999999999999982            2348889  9999977544

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.39  E-value=5e-14  Score=95.48  Aligned_cols=80  Identities=20%  Similarity=0.304  Sum_probs=58.3

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCc--EEEEEeeCCCCHHHHHHHHhCC
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQ--FEIIFVSSDRSESSYQSYLSGM  102 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~--~~ii~i~~d~~~~~~~~~~~~~  102 (190)
                      +...|++.+++..+.+   ++++++|+||++||++|+.+.|.+.++++.+......  +.+.....+             
T Consensus         3 ~V~~lt~~nF~~~v~~---~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~-------------   66 (116)
T d2djja1           3 PVTVVVAKNYNEIVLD---DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT-------------   66 (116)
T ss_dssp             SSEECCTTTTTTSSSC---TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT-------------
T ss_pred             CcEEcccCCHHHHHhc---CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc-------------
Confidence            3456777888766643   6788999999999999999999999999999765211  222222221             


Q ss_pred             CCCcccCCchhHHHHHHHcCCCCCCeeeeeeec
Q psy8729         103 PWPAIPYASETRQSLASLYNVHGIPSLILLAVE  135 (190)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id  135 (190)
                                   ..+..++|.++||+++  +.
T Consensus        67 -------------~~~~~~~v~~~Pti~~--f~   84 (116)
T d2djja1          67 -------------ANDVPDEIQGFPTIKL--YP   84 (116)
T ss_dssp             -------------TSCCSSCCSSSSEEEE--EC
T ss_pred             -------------hhhhcccccCCCEEEE--EE
Confidence                         2245789999999999  73

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.39  E-value=9.4e-13  Score=86.42  Aligned_cols=61  Identities=13%  Similarity=0.091  Sum_probs=51.4

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++.+.++.|+++|||+|+.+.|.++++++.+    +++.+..++.+.                       ...+++.|+|
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~----~~i~~~~vd~~~-----------------------~~~l~~~~~I   66 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDVVQALNLMAVLN----PRIKHTAIDGGT-----------------------FQNEITERNV   66 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHC----TTEEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHhC----CceEEEEEeccc-----------------------chHHHhhccc
Confidence            5677889999999999999999999998764    358888888775                       3578999999


Q ss_pred             CCCCeeee
Q psy8729         124 HGIPSLIL  131 (190)
Q Consensus       124 ~~~P~~~l  131 (190)
                      .++||+++
T Consensus        67 ~~vPt~~~   74 (96)
T d1hyua4          67 MGVPAVFV   74 (96)
T ss_dssp             CSSSEEEE
T ss_pred             ccccEEEE
Confidence            99999744

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=9.7e-12  Score=87.90  Aligned_cols=113  Identities=18%  Similarity=0.248  Sum_probs=84.0

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCCh-hhhhhhHHHHHHHHHHhhcC--CcEEEEEeeCC---CCHHHHHHHH
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCP-PCKAFTPQLIETYRKLKEDG--YQFEIIFVSSD---RSESSYQSYL   99 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~g--~~~~ii~i~~d---~~~~~~~~~~   99 (190)
                      +|+|.|.+|+...++++ +||++||+||.+||+ .|....+.+.++++++...+  ..+.+..++.+   +..+....+.
T Consensus         2 dF~L~d~~G~~vsl~d~-~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1wp0a1           2 PFSLTTHTGERKTDKDY-LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYV   80 (160)
T ss_dssp             CCEEEETTSCEEEGGGG-TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHH
T ss_pred             CeEEEcCCCCEEcHHHh-CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHH
Confidence            47888888888888887 899999999999997 79999999999998887654  34666677765   3456667777


Q ss_pred             hCCC--CCcccCCchhHHHHHHHcCCCCC---------------CeeeeeeecCCCceE
Q psy8729         100 SGMP--WPAIPYASETRQSLASLYNVHGI---------------PSLILLAVEAGGRLD  141 (190)
Q Consensus       100 ~~~~--~~~~~~~~~~~~~~~~~~~v~~~---------------P~~~l~~id~~g~~~  141 (190)
                      ...+  |..++........+.+.|++...               +++++  ||++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~L--Id~~G~i~  137 (160)
T d1wp0a1          81 KEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYL--IGPDGEFL  137 (160)
T ss_dssp             HTTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEE--ECTTSCEE
T ss_pred             hhcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEE--ECCCCcEE
Confidence            6665  34444444445677788876433               57789  99999543

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.9e-11  Score=89.21  Aligned_cols=74  Identities=14%  Similarity=0.069  Sum_probs=60.6

Q ss_pred             ccceeccCCC-ccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC-------CHHHH
Q psy8729          24 TYNIGLAEGT-VTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR-------SESSY   95 (190)
Q Consensus        24 ~~~~~l~~~~-~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~-------~~~~~   95 (190)
                      ..+|++.+.+ ++...++.+ +||+++|.+|||||++|.+..+.|++++++|+++|  +.|+++.+++       +.++.
T Consensus         3 iydf~~~~l~~g~~vsL~~y-kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g--~~Il~fP~nqF~~qE~~~~~ei   79 (184)
T d2f8aa1           3 VYAFSARPLAGGEPVSLGSL-RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQFGHQENAKNEEI   79 (184)
T ss_dssp             GGGCEECBTTCSSCEEGGGG-TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTTTCSCHHHH
T ss_pred             eeeeEEEECCCCCEecHHHc-CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccc--eeEEEeeccccccccccchhhh
Confidence            3567777754 455556665 89999999999999999999999999999999875  9999998763       45778


Q ss_pred             HHHHh
Q psy8729          96 QSYLS  100 (190)
Q Consensus        96 ~~~~~  100 (190)
                      ++|.+
T Consensus        80 ~~f~~   84 (184)
T d2f8aa1          80 LNSLK   84 (184)
T ss_dssp             HHHHH
T ss_pred             hhhhh
Confidence            88875

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.31  E-value=5.6e-12  Score=86.35  Aligned_cols=82  Identities=11%  Similarity=0.058  Sum_probs=59.3

Q ss_pred             cceeccCCCccceeeeeccCCcEEEEEEEcCCChhh------hhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHH
Q psy8729          25 YNIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPC------KAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSY   98 (190)
Q Consensus        25 ~~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C------~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~   98 (190)
                      ..+.|++.+++..+.    +++.++|.||++||++|      ..+.+.+..+++.+.+.  .+.+..|+++.        
T Consensus        12 ~V~~L~~~nf~~~l~----~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~--~v~~a~Vd~~~--------   77 (124)
T d1a8ya1          12 RVINVNAKNYKNVFK----KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK--GVGFGLVDSEK--------   77 (124)
T ss_dssp             CCEECCTTTHHHHHH----HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGG--TEEEEEEETTT--------
T ss_pred             ccEECCHHHHHHHHH----hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccC--CeEEEEEEeec--------
Confidence            356788888766553    56789999999999864      33344444445554443  48888888775        


Q ss_pred             HhCCCCCcccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729          99 LSGMPWPAIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                                     +..++++|+|.++||+++  +. +|
T Consensus        78 ---------------~~~l~~~~~I~~yPTi~~--f~-~g   99 (124)
T d1a8ya1          78 ---------------DAAVAKKLGLTEEDSIYV--FK-ED   99 (124)
T ss_dssp             ---------------SHHHHHTTTCCSTTCEEE--EE-SS
T ss_pred             ---------------ccchhhccccccCCcEEE--ec-cC
Confidence                           457899999999999999  75 45

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.5e-12  Score=87.97  Aligned_cols=77  Identities=16%  Similarity=0.300  Sum_probs=50.5

Q ss_pred             ceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHH
Q psy8729          36 TKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQ  115 (190)
Q Consensus        36 ~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (190)
                      +.+.....++|+++|+||++||++|+.+.|.+.+..+..... .++.++.|+.+...                       
T Consensus        16 ~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~-~~fv~v~vd~~~~~-----------------------   71 (135)
T d1sena_          16 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS-HNFVMVNLEDEEEP-----------------------   71 (135)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH-TTSEEEEEEGGGSC-----------------------
T ss_pred             HHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhc-CCcEEEeCCCCcCH-----------------------
Confidence            333333447999999999999999999999986654433321 24555555443211                       


Q ss_pred             HHHH-HcCCCCCCeeeeeeecCCC
Q psy8729         116 SLAS-LYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       116 ~~~~-~~~v~~~P~~~l~~id~~g  138 (190)
                      .... .+...++|++++  +|++|
T Consensus        72 ~~~~~~~~~~~~Pt~~~--~d~~G   93 (135)
T d1sena_          72 KDEDFSPDGGYIPRILF--LDPSG   93 (135)
T ss_dssp             SCGGGCTTCSCSSEEEE--ECTTS
T ss_pred             HHHHHHhhcccceeEEE--ECCCC
Confidence            1122 224456899999  99999

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.14  E-value=3e-11  Score=86.73  Aligned_cols=45  Identities=24%  Similarity=0.376  Sum_probs=37.7

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCH
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSE   92 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~   92 (190)
                      +++++++.||++||++|+..+|.|+++++.++    ++.+..|+.|.++
T Consensus        53 ~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~----~~~~~~i~~d~~~   97 (166)
T d1z6na1          53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP----NIELAIISKGRAE   97 (166)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT----TEEEEEECHHHHH
T ss_pred             cCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC----CCcEEEEECccCH
Confidence            68889999999999999999999999988875    3667777776433

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.3e-11  Score=83.10  Aligned_cols=82  Identities=15%  Similarity=0.203  Sum_probs=60.6

Q ss_pred             CCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHH---HHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcc
Q psy8729          31 EGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQL---IETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAI  107 (190)
Q Consensus        31 ~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~  107 (190)
                      .++++........++|+++|+|+++||++|+.+....   .++.+.+.+.   +.++.++.+..+               
T Consensus        28 ~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~e---------------   89 (147)
T d2dlxa1          28 KGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEE---------------   89 (147)
T ss_dssp             CSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHH---------------
T ss_pred             cCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhh---eeEeeecccchh---------------
Confidence            3455555555555799999999999999999987644   4444444443   667777666433               


Q ss_pred             cCCchhHHHHHHHcCCCCCCeeeeeeecC-CC
Q psy8729         108 PYASETRQSLASLYNVHGIPSLILLAVEA-GG  138 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~v~~~P~~~l~~id~-~g  138 (190)
                            ...+.+.|++.++|++++  +|+ +|
T Consensus        90 ------~~~~~~~y~v~~~Pti~~--idp~~g  113 (147)
T d2dlxa1          90 ------GQRYIQFYKLGDFPYVSI--LDPRTG  113 (147)
T ss_dssp             ------HHHHHHHHTCCSSSEEEE--ECTTTC
T ss_pred             ------hhhhhhheecCceeEEEE--EeCCCC
Confidence                  577899999999999999  997 46

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=1.7e-09  Score=76.14  Aligned_cols=114  Identities=17%  Similarity=0.197  Sum_probs=73.4

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCCh-hhhhhhHHHHHHHHHHhhc-CCcEEEEEeeCCC---CHHHHHHHHh
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCP-PCKAFTPQLIETYRKLKED-GYQFEIIFVSSDR---SESSYQSYLS  100 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~-g~~~~ii~i~~d~---~~~~~~~~~~  100 (190)
                      +|+|.|.+|+...++.+ +||++||.||.+||+ .|......+..+.+.+... ...+.+..++.+.   ..+....+..
T Consensus         8 dF~l~d~~G~~vsl~~~-~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (169)
T d2b7ka1           8 PFHLEDMYGNEFTEKNL-LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS   86 (169)
T ss_dssp             CCEEEETTSCEEEGGGG-TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred             CeEEEeCCCCEECHHHH-CCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhc
Confidence            58889999988888887 899999999999997 5777777776666665543 2245555565543   3344455544


Q ss_pred             CCC--CCcccCCchhHHHHHHHc----------------CCCCCCeeeeeeecCCCceEE
Q psy8729         101 GMP--WPAIPYASETRQSLASLY----------------NVHGIPSLILLAVEAGGRLDV  142 (190)
Q Consensus       101 ~~~--~~~~~~~~~~~~~~~~~~----------------~v~~~P~~~l~~id~~g~~~i  142 (190)
                      ...  +..............+.+                .+...|++++  ||++|+++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fL--ID~~G~vv~  144 (169)
T d2b7ka1          87 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYL--MDPEGQFVD  144 (169)
T ss_dssp             TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEE--ECTTSCEEE
T ss_pred             cccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEE--ECCCCeEEE
Confidence            443  223333333333333333                3455799999  999995543

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=5.9e-10  Score=75.78  Aligned_cols=81  Identities=11%  Similarity=0.099  Sum_probs=58.2

Q ss_pred             ceeccCCCccceeeeeccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC---CCCHHHHHHHHhCC
Q psy8729          26 NIGLAEGTVTTKVLSYIESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS---DRSESSYQSYLSGM  102 (190)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~---d~~~~~~~~~~~~~  102 (190)
                      .++|++.+++..+.    +++.++|.|+++||..|..  |++.++++.+.+.. +...-.|.+   |.+.          
T Consensus         6 ~v~L~~~nFd~~i~----~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~-~~~~~~V~~~~vd~~~----------   68 (122)
T d1g7ea_           6 ALPLDTVTFYKVIP----KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSD-DLLVAEVGISDYGDKL----------   68 (122)
T ss_dssp             SCSCSHHHHHHHGG----GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCS-SEEEEEEESCCTTSCH----------
T ss_pred             eEECCHHhHHHHHh----hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHH-HHhhhccceeeccccc----------
Confidence            46677777765553    6889999999999988864  88999999988763 333323433   3333          


Q ss_pred             CCCcccCCchhHHHHHHHcC--CCCCCeeeeeeecC
Q psy8729         103 PWPAIPYASETRQSLASLYN--VHGIPSLILLAVEA  136 (190)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~--v~~~P~~~l~~id~  136 (190)
                                 +..++..|+  |.++||+++  +.+
T Consensus        69 -----------n~~l~~~~~~~I~~yPTi~~--f~~   91 (122)
T d1g7ea_          69 -----------NMELSEKYKLDKESYPVFYL--FRD   91 (122)
T ss_dssp             -----------HHHHHHHHTCSSSSCEEEEE--EES
T ss_pred             -----------cHHHHHhhcccccCCCeEEE--Eec
Confidence                       678888765  679999999  643

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=3.7e-10  Score=84.36  Aligned_cols=64  Identities=13%  Similarity=0.213  Sum_probs=52.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ++.+|||.||++||++|+.+.|.|..++++|+    ++.++.|+.+.                        ..+...|++
T Consensus       119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~----~vkF~ki~~~~------------------------~~~~~~~~i  170 (217)
T d2trcp_         119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP----MVKFCKIRASN------------------------TGAGDRFSS  170 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT----TSEEEEEEHHH------------------------HTCSTTSCG
T ss_pred             CCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc----cceEEEEcccc------------------------chhHHhCCC
Confidence            56789999999999999999999999999885    36777776541                        123467999


Q ss_pred             CCCCeeeeeeecCCC
Q psy8729         124 HGIPSLILLAVEAGG  138 (190)
Q Consensus       124 ~~~P~~~l~~id~~g  138 (190)
                      .++|++++  + ++|
T Consensus       171 ~~lPtl~~--y-k~G  182 (217)
T d2trcp_         171 DVLPTLLV--Y-KGG  182 (217)
T ss_dssp             GGCSEEEE--E-ETT
T ss_pred             CCCCeEEE--E-ECC
Confidence            99999999  7 678

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.6e-09  Score=73.83  Aligned_cols=121  Identities=12%  Similarity=0.112  Sum_probs=83.4

Q ss_pred             CCCcccceeccC-CCccceeeeeccCCcEEEEEEE-cCCChhh-hhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          20 GAKKTYNIGLAE-GTVTTKVLSYIESCQVIGLYFS-AHWCPPC-KAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        20 ~~~~~~~~~l~~-~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C-~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      .+...|+|.|.+ ..++...++.+-++|++||+|| ..|||.| ....+.+.+.+..+.+.| ...++.++.+ +....+
T Consensus         5 VGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g-~~~i~~~s~~-~~~~~~   82 (161)
T d1hd2a_           5 VGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG-VQVVACLSVN-DAFVTG   82 (161)
T ss_dssp             TTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT-CCEEEEEESS-CHHHHH
T ss_pred             CCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcC-CeEEEEEecC-chhhhh
Confidence            355678888864 3344444455447888989988 9999999 568888988888888774 2344556655 555666


Q ss_pred             HHHhCCCC-CcccCCchhHHHHHHHcCCCC------------CCeeeeeeecCCCceEEEc
Q psy8729          97 SYLSGMPW-PAIPYASETRQSLASLYNVHG------------IPSLILLAVEAGGRLDVIT  144 (190)
Q Consensus        97 ~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~------------~P~~~l~~id~~g~~~i~~  144 (190)
                      .|....+. ..+++..|.+..++++||+..            .-.+++  |+.+|+++.+.
T Consensus        83 ~~~~~~~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~--I~~~G~I~~~~  141 (161)
T d1hd2a_          83 EWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSM--VVQDGIVKALN  141 (161)
T ss_dssp             HHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEE--EEETTEEEEEE
T ss_pred             hhhhhcccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEE--EECCCEEEEEE
Confidence            77765553 357888999999999999731            123466  66799554443

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=2.7e-09  Score=70.01  Aligned_cols=59  Identities=15%  Similarity=0.247  Sum_probs=44.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNV  123 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (190)
                      ..-++|+.||++||++|+...+.|.++...|.     ..++.++.+.                       +..+.++|++
T Consensus        14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-----~~~v~vd~~~-----------------------~~~l~~~y~~   65 (100)
T d1wjka_          14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-----LQEVDITLPE-----------------------NSTWYERYKF   65 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-----EEEEETTSST-----------------------THHHHHHSSS
T ss_pred             CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc-----eEEEeccccc-----------------------CHHHHHHhcc
Confidence            56678999999999999999999987655442     3454444433                       4688999998


Q ss_pred             CCCCeeee
Q psy8729         124 HGIPSLIL  131 (190)
Q Consensus       124 ~~~P~~~l  131 (190)
                      . +|++++
T Consensus        66 ~-VPvl~i   72 (100)
T d1wjka_          66 D-IPVFHL   72 (100)
T ss_dssp             S-CSEEEE
T ss_pred             c-CCceee
Confidence            7 997655

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=98.64  E-value=1.6e-07  Score=66.52  Aligned_cols=118  Identities=14%  Similarity=0.226  Sum_probs=83.1

Q ss_pred             CCcccceecc----CCCccceeeeeccCCcEEEEEEE-cCCChhhh-hhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHH
Q psy8729          21 AKKTYNIGLA----EGTVTTKVLSYIESCQVIGLYFS-AHWCPPCK-AFTPQLIETYRKLKEDGYQFEIIFVSSDRSESS   94 (190)
Q Consensus        21 ~~~~~~~~l~----~~~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~-~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~   94 (190)
                      +...|+|+|.    +..+....++..-+++++||.|| ..|++.|. +..+......+.+...| ..+++.+++| +...
T Consensus         7 Gd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g-~~~v~~isvd-~~~~   84 (162)
T d1tp9a1           7 GDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG-VTEILCISVN-DPFV   84 (162)
T ss_dssp             TCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT-CCCEEEEESS-CHHH
T ss_pred             CCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcC-Ccceeeeecc-chhh
Confidence            4455666663    33344444444337888888888 99999995 67888888778777764 3567788887 6778


Q ss_pred             HHHHHhCCCC-CcccCCchhHHHHHHHcCCCC-----------CCeeeeeeecCCCceEEE
Q psy8729          95 YQSYLSGMPW-PAIPYASETRQSLASLYNVHG-----------IPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        95 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~-----------~P~~~l~~id~~g~~~i~  143 (190)
                      .+.|....+. ..+++..|....+.+.||+.-           -=..++  || +|+++.+
T Consensus        85 ~~~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfi--Id-dg~I~~~  142 (162)
T d1tp9a1          85 MKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALL--VD-DLKVKAA  142 (162)
T ss_dssp             HHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEE--EE-TTEEEEE
T ss_pred             hhhhhhhcccccccccccchhhHHHhhhhhccccccccCCcEEEEEEEE--EE-CCEEEEE
Confidence            8888887764 458888999999999999631           124577  88 8955443

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=98.33  E-value=1e-06  Score=62.23  Aligned_cols=117  Identities=12%  Similarity=0.144  Sum_probs=73.8

Q ss_pred             CcccceeccCCC---ccceeeeeccCCcEEEEEEE-cCCChhhhhhhHHHHHHHH-HHhhcCCcEEEEEeeCCCCHHHHH
Q psy8729          22 KKTYNIGLAEGT---VTTKVLSYIESCQVIGLYFS-AHWCPPCKAFTPQLIETYR-KLKEDGYQFEIIFVSSDRSESSYQ   96 (190)
Q Consensus        22 ~~~~~~~l~~~~---~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~-~~~~~g~~~~ii~i~~d~~~~~~~   96 (190)
                      ...|+|++....   .....++++-++|.+||.|+ +.++|.|..+...+...+. .+...+.+. ++.++.+ +....+
T Consensus         5 d~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~-vv~~~s~-d~~~~~   82 (163)
T d1nm3a2           5 KKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDD-ILVVSVN-DTFVMN   82 (163)
T ss_dssp             SBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCE-EEEEESS-CHHHHH
T ss_pred             CCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccc-eeeeecC-CHHHHH
Confidence            455666665322   23344444436888888877 9999999998776554433 333333223 3344444 555666


Q ss_pred             HHHhCCCCCcccCCchhHHHHHHHcCCC-----------CCCeeeeeeecCCCceEEE
Q psy8729          97 SYLSGMPWPAIPYASETRQSLASLYNVH-----------GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----------~~P~~~l~~id~~g~~~i~  143 (190)
                      .+.+..+...+++..|....+++.||+.           +--..++  +| +|+++.+
T Consensus        83 a~~~~~~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~I--id-dG~I~~~  137 (163)
T d1nm3a2          83 AWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSML--VK-NGVVEKM  137 (163)
T ss_dssp             HHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEE--EE-TTEEEEE
T ss_pred             HHhhhhccCceeeeccCChHHHHHhhhhccccccccccccceEEEE--Ee-CCEEEEE
Confidence            6666666667889999999999999862           2335777  88 8955444

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=4.5e-06  Score=59.12  Aligned_cols=90  Identities=13%  Similarity=0.123  Sum_probs=57.1

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC---CC-------------HHHHHHHHh-CCCC--
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD---RS-------------ESSYQSYLS-GMPW--  104 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d---~~-------------~~~~~~~~~-~~~~--  104 (190)
                      ..+++|+.|+.+.||+|+++.+.+.++.+..     .+.+..+.+.   .+             ......+.. ....  
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-----~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~  109 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDSG-----KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLK  109 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHTT-----SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCC
T ss_pred             CCCEEEEEEECCCCcchHHHHHHHHHHHhcc-----ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhccc
Confidence            6778899999999999999999997765432     4666666542   11             111112222 1111  


Q ss_pred             -CcccCC-------chhHHHHHHHcCCCCCCeeeeeeecCCCce
Q psy8729         105 -PAIPYA-------SETRQSLASLYNVHGIPSLILLAVEAGGRL  140 (190)
Q Consensus       105 -~~~~~~-------~~~~~~~~~~~~v~~~P~~~l~~id~~g~~  140 (190)
                       ......       -+.+..+.+.+|+.++|++++  .|++|+.
T Consensus       110 ~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~--~~~~g~~  151 (169)
T d1v58a1         110 LNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYY--MSKENTL  151 (169)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEE--EETTTEE
T ss_pred             ccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEE--ECCCCCE
Confidence             111111       122456788899999999999  9999944

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=9.4e-06  Score=56.62  Aligned_cols=85  Identities=15%  Similarity=0.322  Sum_probs=52.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC--CC--CH---------------HHHHHHHhCCCC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS--DR--SE---------------SSYQSYLSGMPW  104 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~--d~--~~---------------~~~~~~~~~~~~  104 (190)
                      +++.+++.|..+.||+|+++.|.+.++.+.    +  +.++.+..  ..  ..               ..+.........
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~----~--~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   98 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNAL----G--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSV   98 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCC
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc----C--ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhcccc
Confidence            688899999999999999999999876432    2  33433332  11  11               111112112211


Q ss_pred             C--cccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         105 P--AIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       105 ~--~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                      .  ........+..+.+.+|+.++|++++    .||
T Consensus        99 ~~~~~~~~i~~~~~la~~lgv~GTPt~~~----~nG  130 (156)
T d1eeja1          99 APASCDVDIADHYALGVQLGVSGTPAVVL----SNG  130 (156)
T ss_dssp             CCCCCSCCHHHHHHHHHHHTCCSSSEEEC----TTS
T ss_pred             chhhhcchHHHHHHHHHHcCCcCCCEEEE----eCC
Confidence            1  11222334678899999999999877    357

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.10  E-value=3.4e-05  Score=53.92  Aligned_cols=44  Identities=20%  Similarity=0.281  Sum_probs=36.6

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~   88 (190)
                      .+++.|+.|+...||+|+++.+.+.++.+++.+.+ .+.++.+..
T Consensus        23 ~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~   66 (172)
T d1z6ma1          23 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLF   66 (172)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHhhhhhhhcccc-ceeeeeccc
Confidence            67888999999999999999999999999988763 555555543

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.97  E-value=3e-05  Score=53.63  Aligned_cols=87  Identities=16%  Similarity=0.234  Sum_probs=51.9

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC--CH--HHHHHHH------------hCCCC-C-
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR--SE--SSYQSYL------------SGMPW-P-  105 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~--~~--~~~~~~~------------~~~~~-~-  105 (190)
                      +.+.+|+.|+-+.||+|+++.+.+.++.+.    +..+.++......  ..  +......            ..... . 
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~  100 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKE  100 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhcc----CceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccc
Confidence            678889999999999999999999877543    2234443333221  11  1111111            11111 1 


Q ss_pred             -cccCCchhHHHHHHHcCCCCCCeeeeeeecCCC
Q psy8729         106 -AIPYASETRQSLASLYNVHGIPSLILLAVEAGG  138 (190)
Q Consensus       106 -~~~~~~~~~~~~~~~~~v~~~P~~~l~~id~~g  138 (190)
                       ...-..+.+..+.+.+||.++|++++    .||
T Consensus       101 ~~~~~~i~~~~~la~~lGv~GTPt~~~----~nG  130 (150)
T d1t3ba1         101 VKTPNIVKKHYELGIQFGVRGTPSIVT----STG  130 (150)
T ss_dssp             CCCSSHHHHHHHHHHHHTCCSSCEEEC----TTS
T ss_pred             hhhhhHHHHHHHHHHhcCcCCCCEEEE----cCC
Confidence             11111333678899999999999888    457

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.92  E-value=3.3e-05  Score=54.33  Aligned_cols=44  Identities=27%  Similarity=0.491  Sum_probs=35.3

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeC
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSS   88 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~   88 (190)
                      .++++||.|+...||+|+.+.+.+.++.+++.+. ..+....+..
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~-~~~~~~~~~~   60 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG-AKFQKNHVSF   60 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-CEEEEEECSS
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccc-cceeEEeccc
Confidence            5778999999999999999999999999988765 2444444543

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=6e-05  Score=53.40  Aligned_cols=44  Identities=18%  Similarity=0.169  Sum_probs=30.5

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEee
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVS   87 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~   87 (190)
                      .++++||.|++-.||+|+.+.+.+..+.+........+.+....
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~   60 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYH   60 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEE
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEe
Confidence            56678999999999999999998866555444332234444443

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=97.52  E-value=0.00022  Score=42.94  Aligned_cols=54  Identities=13%  Similarity=0.158  Sum_probs=38.0

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|..+|||+|......|.+       .|  +.+..+.++.+++                    .....+.+|...+|.
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~-------~~--i~~~~~~i~~~~~--------------------~~~~~~~~g~~tvP~   53 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDR-------AG--LAYNTVDISLDDE--------------------ARDYVMALGYVQAPV   53 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHH--------------------HHHHHHHTTCBCCCE
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------cC--CceEEEEccCCHH--------------------HHHHHHHhCCCCcCE
Confidence            567889999999999888853       22  4445566665543                    244556778999998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        54 i~i   56 (74)
T d1r7ha_          54 VEV   56 (74)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00061  Score=41.15  Aligned_cols=54  Identities=17%  Similarity=0.324  Sum_probs=36.7

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      ++.|..+||++|......|.+       .|  +.+..+.++.+.+                    ..+..+..|...+|.
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~-------~~--i~y~~~~i~~~~~--------------------~~~~~~~~g~~tvP~   53 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMEN-------RG--FDFEMINVDRVPE--------------------AAEALRAQGFRQLPV   53 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHH--------------------HHHHHHHTTCCSSCE
T ss_pred             EEEEeCCCCccHHHHHHHHHh-------cC--ceeEEEeecCCHH--------------------HHHHHHhcCCCCCCE
Confidence            467789999999999888843       23  3444556665443                    233345578999998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        54 i~i   56 (76)
T d1h75a_          54 VIA   56 (76)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            777

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.30  E-value=0.00023  Score=46.03  Aligned_cols=65  Identities=17%  Similarity=0.261  Sum_probs=41.5

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      ++++  ++.|..+|||+|......|.++.-++    ..+.+.-+..+.+.+..+                  ..+.+..|
T Consensus        10 ~~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~----~~~~~~e~d~~~d~~~~~------------------~~l~~~~g   65 (105)
T d1ktea_          10 QPGK--VVVFIKPTCPFCRKTQELLSQLPFKE----GLLEFVDITATSDTNEIQ------------------DYLQQLTG   65 (105)
T ss_dssp             CTTC--EEEEECSSCHHHHHHHHHHHHSCBCT----TSEEEEEGGGSTTHHHHH------------------HHHHHHHS
T ss_pred             ccCC--EEEEECCCCchHHHHHHHHHHhCCcc----ceeeeeecccccccHHHH------------------HHHhhccC
Confidence            3555  46789999999999998886543222    235566665554443222                  23344557


Q ss_pred             CCCCCeeee
Q psy8729         123 VHGIPSLIL  131 (190)
Q Consensus       123 v~~~P~~~l  131 (190)
                      ...+|.+++
T Consensus        66 ~~tvPqIfi   74 (105)
T d1ktea_          66 ARTVPRVFI   74 (105)
T ss_dssp             CCCSCEEEE
T ss_pred             CCcCcEEEE
Confidence            788998887

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.15  E-value=0.00071  Score=47.84  Aligned_cols=79  Identities=22%  Similarity=0.415  Sum_probs=61.3

Q ss_pred             CCcEEEEE-EEcCCChhhhh-hhHHHHHHHHHH-hhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHH
Q psy8729          44 SCQVIGLY-FSAHWCPPCKA-FTPQLIETYRKL-KEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASL  120 (190)
Q Consensus        44 ~~k~vlv~-F~a~wC~~C~~-~~~~l~~l~~~~-~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (190)
                      .+|.++|. +-+...|.|.. .+|.+.+-++++ ++.|.+ +++.++++ +...++.|.+.++...+.+..|.+..+.+.
T Consensus        41 ~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd-~I~~iSvn-D~fv~~aW~~~~~~~~I~~lsD~~g~f~k~  118 (179)
T d1xiya1          41 NNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFD-DIYCITNN-DIYVLKSWFKSMDIKKIKYISDGNSSFTDS  118 (179)
T ss_dssp             TTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCS-EEEEEESS-CHHHHHHHHHHTTCCSSEEEECTTSHHHHH
T ss_pred             CCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCc-eEEEEecC-CHHHHHHHHhhcCcceEEEeeCCchHHHHh
Confidence            55555454 44888999955 799999988998 455533 67888887 778888888888776778899999999999


Q ss_pred             cCCC
Q psy8729         121 YNVH  124 (190)
Q Consensus       121 ~~v~  124 (190)
                      ||+.
T Consensus       119 lg~~  122 (179)
T d1xiya1         119 MNML  122 (179)
T ss_dssp             TTCE
T ss_pred             hhcc
Confidence            9973

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=97.14  E-value=0.00076  Score=41.28  Aligned_cols=55  Identities=15%  Similarity=0.306  Sum_probs=36.1

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      |..|..+|||+|.+....|.+.       |  +.+..++++.+.+.                   ...+.+..|...+|.
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~-------~--i~y~~~di~~~~~~-------------------~~~~~~~~g~~tvP~   54 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK-------G--VSFQELPIDGNAAK-------------------REEMIKRSGRTTVPQ   54 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------T--CCCEEEECTTCSHH-------------------HHHHHHHHSSCCSCE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc-------C--CCeEEEeccchHHH-------------------HHHHHHHhCCCCCCe
Confidence            4567799999999888777432       2  33444555543321                   345666678889998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        55 i~i   57 (82)
T d1fova_          55 IFI   57 (82)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            877

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=97.02  E-value=0.0016  Score=38.96  Aligned_cols=54  Identities=22%  Similarity=0.394  Sum_probs=35.3

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      |+.|..++||+|++....|.+.       |..+..+-++.+..                      ...+.+..+...+|.
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~-------~i~~~~~~v~~~~~----------------------~~~~~~~~~~~tvP~   57 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK-------GLSFEEIILGHDAT----------------------IVSVRAVSGRTTVPQ   57 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCCEEEETTTTCC----------------------HHHHHHHTCCSSSCE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-------CCCeEEEEccCcHH----------------------HHHHHHHhCCccCCE
Confidence            4678899999999999888542       22344443333322                      234455678889998


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +++
T Consensus        58 i~i   60 (74)
T d1nm3a1          58 VFI   60 (74)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            766

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00054  Score=42.33  Aligned_cols=37  Identities=16%  Similarity=0.298  Sum_probs=28.2

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD   89 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d   89 (190)
                      +|.|..++||+|.+....|.++..++..    +.+..++++
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~----i~~~~~~~~   39 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD----FQYQYVDIR   39 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS----CEEEEECHH
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC----ceEEEEecC
Confidence            5678899999999999999888777653    455555443

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.45  E-value=0.011  Score=35.54  Aligned_cols=61  Identities=15%  Similarity=0.325  Sum_probs=44.4

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCee
Q psy8729          50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSL  129 (190)
Q Consensus        50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~  129 (190)
                      |..+++.|+.|.+.....++..+++   |.+.++.-+. |                        ..++. .||+.++|.+
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~---gi~a~v~kv~-d------------------------~~ei~-~ygVmstPal   54 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKEL---GIDAEFEKIK-E------------------------MDQIL-EAGLTALPGL   54 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHT---TCCEEEEEEC-S------------------------HHHHH-HHTCSSSSCE
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHc---CCceEEEEeC-C------------------------HHHHH-HcCCcCCCEE
Confidence            3445899999999999998877764   4456776653 2                        34555 5999999999


Q ss_pred             eeeeecCCCceEEEccc
Q psy8729         130 ILLAVEAGGRLDVITTE  146 (190)
Q Consensus       130 ~l~~id~~g~~~i~~~~  146 (190)
                      ++     ||  +++..+
T Consensus        55 vI-----dg--~vv~~G   64 (77)
T d1iloa_          55 AV-----DG--ELKIMG   64 (77)
T ss_dssp             EE-----TT--EEEECS
T ss_pred             EE-----CC--EEEEEe
Confidence            98     68  555443

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.17  E-value=0.027  Score=36.70  Aligned_cols=66  Identities=18%  Similarity=0.272  Sum_probs=47.3

Q ss_pred             CCcEEEEEEEc-CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          44 SCQVIGLYFSA-HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        44 ~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      .+.+.++.|-. ..|+.|......+++++.- .   +++.+.....+..+                     ....++.|+
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-S---dki~~~~~~~~~~e---------------------~~~~~~~~~   75 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T---DKLSYEIVDFDTPE---------------------GKELAKRYR   75 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C---TTEEEEEEETTSHH---------------------HHHHHHHTT
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHhh-C---CCeEEEEeccCcch---------------------hhhHHHhhc
Confidence            56666666654 5799999888888776443 2   34777666655332                     578899999


Q ss_pred             CCCCCeeeeeeecC
Q psy8729         123 VHGIPSLILLAVEA  136 (190)
Q Consensus       123 v~~~P~~~l~~id~  136 (190)
                      +...|++.+  .+.
T Consensus        76 ver~Ps~~i--~~~   87 (119)
T d1a8la1          76 IDRAPATTI--TQD   87 (119)
T ss_dssp             CCSSSEEEE--EET
T ss_pred             cccCceEEE--ecC
Confidence            999999998  764

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.0044  Score=44.23  Aligned_cols=43  Identities=26%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             CCcEEEEEEEcCCChhhhhhhHHHH---HHHHHHhhcCCcEEEEEee
Q psy8729          44 SCQVIGLYFSAHWCPPCKAFTPQLI---ETYRKLKEDGYQFEIIFVS   87 (190)
Q Consensus        44 ~~k~vlv~F~a~wC~~C~~~~~~l~---~l~~~~~~~g~~~~ii~i~   87 (190)
                      .+++.|+.|++-+||+|.++.|.|.   ++.+.+++. ..+...-+.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~-v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG-VKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTT-CCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCC-cEEEEEecC
Confidence            5678899999999999999999775   555555543 234444343

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.16  E-value=0.065  Score=34.15  Aligned_cols=49  Identities=24%  Similarity=0.204  Sum_probs=31.9

Q ss_pred             CCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeee
Q psy8729          55 HWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL  131 (190)
Q Consensus        55 ~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l  131 (190)
                      |.||+|.+....|..    +   +  +.+..+.++.+.+.                   ...+.+..+...+|.+|+
T Consensus        28 p~Cp~c~~ak~lL~~----~---~--i~~~~~~v~~~~~~-------------------~~~l~~~t~~~TvPqIFi   76 (109)
T d1wika_          28 AKCGFSKQILEILNS----T---G--VEYETFDILEDEEV-------------------RQGLKTFSNWPTYPQLYV   76 (109)
T ss_dssp             CCSSTHHHHHHHHHH----T---C--SCEEEEESSSCHHH-------------------HHHHHHHHSCCSSCEEEC
T ss_pred             CCChHHHHHHHHHHh----c---C--CCceEEEecccHHH-------------------HHHHHHhcCCCCCCeEEE
Confidence            789999999888743    2   2  23444555654421                   344455567888999988

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=91.64  E-value=0.42  Score=28.01  Aligned_cols=51  Identities=20%  Similarity=0.245  Sum_probs=32.6

Q ss_pred             EEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCe
Q psy8729          49 GLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPS  128 (190)
Q Consensus        49 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~  128 (190)
                      +..|..++|+.|......+.+   .   .+  +.+..++++.+                       .++.++||.. +|.
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~---~---~~--~~~~~vdI~~d-----------------------~~l~~~y~~~-IPV   49 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ---A---RA--GAFFSVFIDDD-----------------------AALESAYGLR-VPV   49 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH---T---TC--CCEEEEECTTC-----------------------HHHHHHHTTT-CSE
T ss_pred             EEEECCCCccHHHHHHHHHHh---c---cC--CcEEEEEccCC-----------------------HHHHHHhCCe-eeE
Confidence            456789999999876554422   1   12  34555666643                       4678888866 896


Q ss_pred             eee
Q psy8729         129 LIL  131 (190)
Q Consensus       129 ~~l  131 (190)
                      +.+
T Consensus        50 l~~   52 (75)
T d1ttza_          50 LRD   52 (75)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            544

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.84  E-value=0.43  Score=34.19  Aligned_cols=40  Identities=15%  Similarity=0.182  Sum_probs=30.4

Q ss_pred             CcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC
Q psy8729          45 CQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD   89 (190)
Q Consensus        45 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d   89 (190)
                      -+.||=.|.+.||..|...-..|.++.+.     +++..+++.+|
T Consensus         5 ~~aVVElFTSqgCssCPpAd~~L~~L~~~-----~~Vi~La~HVd   44 (225)
T d2axoa1           5 VKGVVELFTSQGCASCPPADEALRKMIQK-----GDVVGLSYHVD   44 (225)
T ss_dssp             CCCEEEEEECTTCTTCHHHHHHHHHHHHH-----TSSEEEEEECS
T ss_pred             CCcEEEEeeCCCCCCCHHHHHHHHHhhCC-----CCEEEEEeccc
Confidence            34455557799999999999999888653     25778888876

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=90.59  E-value=0.6  Score=27.09  Aligned_cols=57  Identities=14%  Similarity=0.218  Sum_probs=36.7

Q ss_pred             EEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcCCCCCCeeee
Q psy8729          52 FSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYNVHGIPSLIL  131 (190)
Q Consensus        52 F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~l  131 (190)
                      |....||+|++..-.|..     +  |..++++.+..+.                       ...+.+..+...+|.+..
T Consensus         4 Y~~~~cP~~~rvr~~l~~-----k--gi~~e~~~~~~~~-----------------------~~~~~~~~p~~~VP~L~~   53 (75)
T d1g7oa2           4 YIYDHCPYCLKARMIFGL-----K--NIPVELHVLLNDD-----------------------AETPTRMVGQKQVPILQK   53 (75)
T ss_dssp             EECTTCHHHHHHHHHHHH-----H--TCCCEEEECCTTT-----------------------THHHHHHHSSSCCCEEEE
T ss_pred             EccCCCCchHHHHHHHHH-----h--CCCcccccccccc-----------------------hHHHHHhCCCCceEEEEE
Confidence            567889999998888743     2  3346665553332                       234556667888997765


Q ss_pred             eeecCCCceEEEc
Q psy8729         132 LAVEAGGRLDVIT  144 (190)
Q Consensus       132 ~~id~~g~~~i~~  144 (190)
                          .+|  +++.
T Consensus        54 ----~dg--~~i~   60 (75)
T d1g7oa2          54 ----DDS--RYMP   60 (75)
T ss_dssp             ----TTT--EEEE
T ss_pred             ----cCC--CEEe
Confidence                578  5554

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=89.67  E-value=0.17  Score=32.99  Aligned_cols=67  Identities=10%  Similarity=0.094  Sum_probs=46.6

Q ss_pred             cCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHcC
Q psy8729          43 ESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLYN  122 (190)
Q Consensus        43 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
                      ..++++++.|+.+. .........+.+++++++++   +.++.++.+.                       .....+.||
T Consensus        21 ~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k---i~Fv~vd~~~-----------------------~~~~l~~~g   73 (133)
T d2djka1          21 SAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGV---INFGTIDAKA-----------------------FGAHAGNLN   73 (133)
T ss_dssp             HTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT---SEEEEECTTT-----------------------TGGGTTTTT
T ss_pred             cCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc---eEEEEEeHHH-----------------------hHHHHHHhc
Confidence            36777777777654 46778888999999998765   6666664432                       234456677


Q ss_pred             C--CCCCeeeeeeecCCC
Q psy8729         123 V--HGIPSLILLAVEAGG  138 (190)
Q Consensus       123 v--~~~P~~~l~~id~~g  138 (190)
                      +  ...|.+++  ++.++
T Consensus        74 l~~~~~P~~~i--~~~~~   89 (133)
T d2djka1          74 LKTDKFPAFAI--QEVAK   89 (133)
T ss_dssp             CCSSSSSEEEE--ECTTT
T ss_pred             CCcccCCcEEE--EEcCC
Confidence            7  46899999  87665

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.31  E-value=0.92  Score=29.04  Aligned_cols=73  Identities=15%  Similarity=0.190  Sum_probs=49.5

Q ss_pred             ccCCcEEEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCCCHHHHHHHHhCCCCCcccCCchhHHHHHHHc
Q psy8729          42 IESCQVIGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDRSESSYQSYLSGMPWPAIPYASETRQSLASLY  121 (190)
Q Consensus        42 ~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (190)
                      +..+.++++.|+.+. ..-......+.+++++|+++   +.++.++.+  +                     .....+.|
T Consensus        14 ~~~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkgk---i~Fv~~D~~--~---------------------~~~~l~~f   66 (125)
T d2b5ea3          14 VESGLPLGYLFYNDE-EELEEYKPLFTELAKKNRGL---MNFVSIDAR--K---------------------FGRHAGNL   66 (125)
T ss_dssp             HHTTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTTT---CEEEEEEHH--H---------------------HTTHHHHT
T ss_pred             HhcCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcCe---eEEEEEchH--H---------------------hHHHHHHc
Confidence            346888888888763 34557788899999999875   666666543  1                     34567788


Q ss_pred             CCC-CCCeeeeeeecCCCceEEE
Q psy8729         122 NVH-GIPSLILLAVEAGGRLDVI  143 (190)
Q Consensus       122 ~v~-~~P~~~l~~id~~g~~~i~  143 (190)
                      |+. ..|.+.+  ++..+..+..
T Consensus        67 gl~e~~P~~~i--~~~~~~~ky~   87 (125)
T d2b5ea3          67 NMKEQFPLFAI--HDMTEDLKYG   87 (125)
T ss_dssp             TCCSCSSEEEE--EETTTTEEEE
T ss_pred             CCCccCCcEEE--EecccCcccc
Confidence            875 4898888  7655433333

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=82.34  E-value=1.2  Score=26.35  Aligned_cols=36  Identities=11%  Similarity=0.231  Sum_probs=25.9

Q ss_pred             EEEEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCCC
Q psy8729          48 IGLYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSDR   90 (190)
Q Consensus        48 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d~   90 (190)
                      ++|.|+.+.|++|++..-.+.+       .|..++.+.|+...
T Consensus         1 t~iLY~~~~S~~~~~v~~~l~e-------~gi~~e~~~v~~~~   36 (85)
T d1r5aa2           1 TTVLYYLPASPPCRSVLLLAKM-------IGVELDLKVLNIME   36 (85)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHH-------TTCCEEEEECCTTT
T ss_pred             CEEEEcCCCCHhHHHHHHHHHH-------cCCCCEEEEecCCC
Confidence            3677889999999998877743       23467787776643

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=80.60  E-value=0.74  Score=27.50  Aligned_cols=14  Identities=36%  Similarity=0.724  Sum_probs=11.3

Q ss_pred             CCChhhhhhhHHHH
Q psy8729          55 HWCPPCKAFTPQLI   68 (190)
Q Consensus        55 ~wC~~C~~~~~~l~   68 (190)
                      +.||+|.+....|.
T Consensus        12 ~~C~~C~~AK~lL~   25 (87)
T d1abaa_          12 HKCGPCDNAKRLLT   25 (87)
T ss_dssp             SCCHHHHHHHHHHH
T ss_pred             CCChhHHHHHHHHH
Confidence            35999999888774

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.01  E-value=2.9  Score=25.29  Aligned_cols=33  Identities=21%  Similarity=0.383  Sum_probs=23.2

Q ss_pred             EEEEcCCChhhhhhhHHHHHHHHHHhhcCCcEEEEEeeCC
Q psy8729          50 LYFSAHWCPPCKAFTPQLIETYRKLKEDGYQFEIIFVSSD   89 (190)
Q Consensus        50 v~F~a~wC~~C~~~~~~l~~l~~~~~~~g~~~~ii~i~~d   89 (190)
                      -.|..++||+|++..-.|..       .|..++++.|+..
T Consensus        21 ~Ly~~~~sP~~~rv~~~l~~-------kgi~~e~~~v~~~   53 (98)
T d1eema2          21 RIYSMRFCPFAERTRLVLKA-------KGIRHEVININLK   53 (98)
T ss_dssp             EEEECTTCHHHHHHHHHHHH-------TTCCEEEEEBCTT
T ss_pred             EEEcCCCChHHHHHHHHHHH-------hCCCCEEEEeccc
Confidence            34567899999988777743       3456778777654