Psyllid ID: psy8747

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
MSIPKAHRYPTMTLRDGAQRDKFPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLADFMTL
ccccccHHHHHccccccccccccccEEEEccHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccccEEccccccccccccccccEEEEEccHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHccccccEEEEccccccccccccHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHHHHHHHHcc
ccccHHHHHHHHHHccccEEEEccEEEEccccHHHHHHHHHHHHHccccccEEEEccHHHcccHHHHccHHHHccccccEEEccccccHcccHHHcEEEEEEcccEHHHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHccccEEEEEcccccccccHHcccHHHHHHHHcccccEEcccccccccccccHHHHHHHHHHHHHHHHcc
msipkahryptmtlrdgaqrdkfppvsvgtttpanLFHILRRQIalpfrkplvlmtpksllrhpeakssfddmiegteflrvipddsiserkadSVEKLVFCSGKVYYDLIKarndnnlgdkIAVVRVEqispfpfdlvkkeclrypnakVQWVQEEhknqgawtyvqprfnttvngqrkmtyvgrptaaspatgskmQHVKELENLLADFMTL
msipkahryptmtlrdgaqrdkfppVSVGTTTPANLFHILRRQIALPFRKPLVLMtpksllrhpeakssfddmieGTEFLrvipddsiserkadsvekLVFCSGKVYYDLikarndnnlgDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEehknqgawtyvqpRFNTTVNGQRKMTYVGRPTaaspatgskmqhVKELENLLADFMTL
MSIPKAHRYPTMTLRDGAQRDKFPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLADFMTL
***************************VGTTTPANLFHILRRQIALPFRKPLVLMTPKSLL***********MIEGTEFLRVIPD********DSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTY*******************************
*SIPKAHRYPTMTLRDGAQRDKFPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLADFMTL
MSIPKAHRYPTMTLRDGAQRDKFPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLADFMTL
****KAHRYPTMTLRDGAQRDKFPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASP*TGSKMQHVKELENLLADFMTL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSIPKAHRYPTMTLRDGAQRDKFPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAKVQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLADFMTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query214
340720185 1044 PREDICTED: 2-oxoglutarate dehydrogenase, 0.864 0.177 0.697 1e-74
229892296 1021 oxoglutarate (alpha-ketoglutarate) dehyd 0.864 0.181 0.670 3e-73
193704554 1029 PREDICTED: 2-oxoglutarate dehydrogenase, 0.855 0.177 0.672 5e-71
170042886 1025 conserved hypothetical protein [Culex qu 0.981 0.204 0.574 5e-71
157114119 1016 2-oxoglutarate dehydrogenase [Aedes aegy 0.981 0.206 0.574 6e-71
328697385 1047 PREDICTED: 2-oxoglutarate dehydrogenase, 0.855 0.174 0.672 6e-71
328697388 1026 PREDICTED: 2-oxoglutarate dehydrogenase, 0.855 0.178 0.672 7e-71
189237141 1050 PREDICTED: similar to 2-oxoglutarate deh 0.883 0.18 0.573 9e-70
380017767 1072 PREDICTED: 2-oxoglutarate dehydrogenase, 0.883 0.176 0.560 1e-69
328786455 1072 PREDICTED: 2-oxoglutarate dehydrogenase, 0.883 0.176 0.551 1e-69
>gi|340720185|ref|XP_003398522.1| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Bombus terrestris] Back     alignment and taxonomy information
 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 129/185 (69%), Positives = 156/185 (84%)

Query: 26   VSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPD 85
            +    +TPAN FHILRRQIALPFRKPL+LMTPKSLLRHPEAKSSFD M+E TEFLRVIP+
Sbjct: 856  IVANCSTPANYFHILRRQIALPFRKPLILMTPKSLLRHPEAKSSFDLMLENTEFLRVIPE 915

Query: 86   DSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLR 145
            + ++ +   +V++++FCSGKVYYDL KAR +  L DK+A+VRVEQISPFP+DLVKKE  +
Sbjct: 916  EGVASQNPSNVKRIIFCSGKVYYDLKKARAEKKLDDKVAIVRVEQISPFPYDLVKKEANK 975

Query: 146  YPNAKVQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELE 205
            Y NA++ W QEEHKNQGAWTY+QPRF+T +NG R + YVGRPT ASPATGSKMQH+KEL+
Sbjct: 976  YANAELVWAQEEHKNQGAWTYIQPRFHTALNGTRSVLYVGRPTGASPATGSKMQHLKELK 1035

Query: 206  NLLAD 210
             LL D
Sbjct: 1036 QLLDD 1040

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|229892296|ref|NP_001153501.1| oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|193704554|ref|XP_001950262.1| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|170042886|ref|XP_001849140.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167866314|gb|EDS29697.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157114119|ref|XP_001652168.1| 2-oxoglutarate dehydrogenase [Aedes aegypti] gi|108877402|gb|EAT41627.1| AAEL006721-PB [Aedes aegypti] Back     alignment and taxonomy information
>gi|328697385|ref|XP_003240323.1| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328697388|ref|XP_003240324.1| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|189237141|ref|XP_973425.2| PREDICTED: similar to 2-oxoglutarate dehydrogenase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|380017767|ref|XP_003692817.1| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Apis florea] Back     alignment and taxonomy information
>gi|328786455|ref|XP_391838.3| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query214
FB|FBgn00103521105 Nc73EF "Neural conserved at 73 0.766 0.148 0.603 4.7e-58
UNIPROTKB|Q9ULD01010 OGDHL "2-oxoglutarate dehydrog 0.855 0.181 0.568 2.3e-56
UNIPROTKB|F1SDW61016 OGDHL "Uncharacterized protein 0.967 0.203 0.523 2.4e-56
UNIPROTKB|E9PFG7873 OGDH "2-oxoglutarate dehydroge 0.855 0.209 0.557 1.4e-55
UNIPROTKB|D4A7P81013 Ogdh "2-oxoglutarate dehydroge 0.855 0.180 0.546 2.9e-55
RGD|15613591023 Ogdh "oxoglutarate (alpha-keto 0.855 0.178 0.546 3e-55
UNIPROTKB|Q5XI781023 Ogdh "2-oxoglutarate dehydroge 0.855 0.178 0.546 3e-55
UNIPROTKB|F5H801974 OGDH "2-oxoglutarate dehydroge 0.855 0.187 0.557 3e-55
UNIPROTKB|Q022181023 OGDH "2-oxoglutarate dehydroge 0.855 0.178 0.557 3.8e-55
UNIPROTKB|Q60HE21023 OGDH "2-oxoglutarate dehydroge 0.855 0.178 0.557 3.8e-55
FB|FBgn0010352 Nc73EF "Neural conserved at 73EF" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 535 (193.4 bits), Expect = 4.7e-58, Sum P(2) = 4.7e-58
 Identities = 99/164 (60%), Positives = 127/164 (77%)

Query:    31 TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISE 90
             +TPAN +HILRRQIALPFRKPL+L TPKSLLRHPEAKS F +M EG+EF R+IPD+  + 
Sbjct:   825 STPANYYHILRRQIALPFRKPLILCTPKSLLRHPEAKSPFSEMSEGSEFQRIIPDNGPAG 884

Query:    91 RKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAK 150
             +   +V+K+VFCSG+VYYDL K R +  L  +IA+VRVEQISPFPFDLVK++   Y NA+
Sbjct:   885 QNPSNVKKVVFCSGRVYYDLTKTRREKQLEGEIAIVRVEQISPFPFDLVKEQANLYKNAE 944

Query:   151 VQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPAT 194
             + W QEEHKNQG+WTYVQPRF T +N  R ++     ++++  T
Sbjct:   945 LVWAQEEHKNQGSWTYVQPRFLTALNHSRDVSQSDEQSSSTNTT 988
GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=ISS
GO:0009353 "mitochondrial oxoglutarate dehydrogenase complex" evidence=ISS
GO:0006099 "tricarboxylic acid cycle" evidence=ISS
GO:0030976 "thiamine pyrophosphate binding" evidence=IEA
GO:0005875 "microtubule associated complex" evidence=IDA
UNIPROTKB|Q9ULD0 OGDHL "2-oxoglutarate dehydrogenase-like, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDW6 OGDHL "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E9PFG7 OGDH "2-oxoglutarate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|D4A7P8 Ogdh "2-oxoglutarate dehydrogenase, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1561359 Ogdh "oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5XI78 Ogdh "2-oxoglutarate dehydrogenase, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F5H801 OGDH "2-oxoglutarate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q02218 OGDH "2-oxoglutarate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q60HE2 OGDH "2-oxoglutarate dehydrogenase, mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.2.4.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query214
PRK09404924 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 co 7e-85
COG0567906 COG0567, SucA, 2-oxoglutarate dehydrogenase comple 4e-73
PRK122701228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 4e-62
TIGR00239929 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenas 9e-55
pfam02779172 pfam02779, Transket_pyr, Transketolase, pyrimidine 3e-05
>gnl|CDD|236499 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information 
 Score =  269 bits (690), Expect = 7e-85
 Identities = 93/181 (51%), Positives = 120/181 (66%), Gaps = 5/181 (2%)

Query: 31  TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISE 90
           TTPA  FH+LRRQ   PFRKPLV+MTPKSLLRHP A SS +++ EG+ F  VI D  I E
Sbjct: 745 TTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGS-FQPVIGD--IDE 801

Query: 91  RKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAK 150
                V+++V CSGKVYYDL++AR    + D +A+VR+EQ+ PFP + +  E  +YPNAK
Sbjct: 802 LDPKKVKRVVLCSGKVYYDLLEARRKRGIDD-VAIVRIEQLYPFPHEELAAELAKYPNAK 860

Query: 151 -VQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLA 209
            V W QEE KNQGAW ++Q      +   +K+ Y GRP +ASPA G    H K+ E L+ 
Sbjct: 861 EVVWCQEEPKNQGAWYFIQHHLEEVLPEGQKLRYAGRPASASPAVGYMSLHKKQQEALVE 920

Query: 210 D 210
           D
Sbjct: 921 D 921

Length = 924
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 214
KOG0450|consensus1017 100.0
PRK122701228 kgd alpha-ketoglutarate decarboxylase; Reviewed 100.0
KOG0451|consensus913 100.0
COG0567906 SucA 2-oxoglutarate dehydrogenase complex, dehydro 100.0
TIGR00239929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 100.0
PRK09404924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 100.0
PTZ00182355 3-methyl-2-oxobutanate dehydrogenase; Provisional 98.99
PRK09212327 pyruvate dehydrogenase subunit beta; Validated 98.04
PF02779178 Transket_pyr: Transketolase, pyrimidine binding do 97.43
PLN02683356 pyruvate dehydrogenase E1 component subunit beta 97.19
CHL00144327 odpB pyruvate dehydrogenase E1 component beta subu 96.97
PRK11892464 pyruvate dehydrogenase subunit beta; Provisional 96.87
cd07036167 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding 96.75
TIGR00204617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 96.56
PRK05444580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 96.37
PRK09627375 oorA 2-oxoglutarate-acceptor oxidoreductase subuni 96.06
PRK08366390 vorA 2-ketoisovalerate ferredoxin oxidoreductase s 95.87
PRK12571641 1-deoxy-D-xylulose-5-phosphate synthase; Provision 95.71
PLN02582677 1-deoxy-D-xylulose-5-phosphate synthase 95.53
TIGR03710562 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s 95.34
COG0674365 PorA Pyruvate:ferredoxin oxidoreductase and relate 95.08
PRK12315581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 95.07
PLN02225701 1-deoxy-D-xylulose-5-phosphate synthase 95.03
TIGR03336 595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 94.72
PRK07119352 2-ketoisovalerate ferredoxin reductase; Validated 94.72
PRK08659376 2-oxoglutarate ferredoxin oxidoreductase subunit a 94.51
PRK08367394 porA pyruvate ferredoxin oxidoreductase subunit al 94.38
smart00861168 Transket_pyr Transketolase, pyrimidine binding dom 92.83
PRK09622407 porA pyruvate flavodoxin oxidoreductase subunit al 92.82
PLN02234641 1-deoxy-D-xylulose-5-phosphate synthase 92.56
PRK13030 1159 2-oxoacid ferredoxin oxidoreductase; Provisional 87.99
PRK09193 1165 indolepyruvate ferredoxin oxidoreductase; Validate 87.45
PRK13029 1186 2-oxoacid ferredoxin oxidoreductase; Provisional 87.41
PF02780124 Transketolase_C: Transketolase, C-terminal domain; 84.38
COG0022324 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex 81.76
>KOG0450|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.6e-80  Score=598.62  Aligned_cols=213  Identities=51%  Similarity=0.869  Sum_probs=201.9

Q ss_pred             CCCcccccCCCCcc-----------cccccCCCCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcc
Q psy8747           2 SIPKAHRYPTMTLR-----------DGAQRDKFPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSF   70 (214)
Q Consensus         2 ~~~~~~~~~~~~~~-----------~~~~~~~~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l   70 (214)
                      |--|++||+|||.+           ...|.+++||||+||||||||||+||||++++|||||||||||||||||+|.|++
T Consensus       789 SSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~  868 (1017)
T KOG0450|consen  789 SSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSF  868 (1017)
T ss_pred             ccccHHHHHHhccCCCccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCH
Confidence            44689999999854           2358899999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCceEcccCCCccccCcccccEEEEecccchHHHHHHHHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCCc
Q psy8747          71 DDMIEGTEFLRVIPDDSISERKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAK  150 (214)
Q Consensus        71 ~ef~~g~~F~~vi~d~~~~~~~~~~v~rvvlCSGKvyydL~~~r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na~  150 (214)
                      +||.+|+.||.||+|.+....++++|||||||||||||||.++|++.++.++|||+|||||+|||+++|++++++|||+|
T Consensus       869 ~ef~~g~~fq~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~~~~vAi~RvEQl~PFp~dli~~e~~~YpnaE  948 (1017)
T KOG0450|consen  869 SEFDEGTGFQRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVGLEGDVAITRVEQLSPFPFDLIQQELNKYPNAE  948 (1017)
T ss_pred             HHhccCCCCceeccccccccCChhhceEEEEecceEehhhhHHHHhcCcccceeEEEeeccCCCcHHHHHHHHHhCCCce
Confidence            99999999999999987777789999999999999999999999999977899999999999999999999999999999


Q ss_pred             EEEeccCcCCCCcccchHHHHHhhhCC-CCceeEecCCCCCCCCCCCHHHHHHHHHHHHHHhhcC
Q psy8747         151 VQWVQEEHKNQGAWTYVQPRFNTTVNG-QRKMTYVGRPTAASPATGSKMQHVKELENLLADFMTL  214 (214)
Q Consensus       151 ~vW~QEEP~NmGAW~~v~~~l~~~~~~-~~~l~yvGRp~saspAtG~~~~H~~eq~~li~~Af~l  214 (214)
                      ++||||||+|||+|.|++|||..+++. .+.+.|+||.+|||||||+...|.+||++++++||.+
T Consensus       949 ivWcQEE~~NmG~w~Yv~PRl~T~l~~~~r~v~Y~GR~Psaa~AtGnk~~Hl~eq~~~l~~a~~~ 1013 (1017)
T KOG0450|consen  949 IVWCQEEHKNMGAWDYVEPRLRTALKRLARPVKYAGRLPSAAPATGNKQTHLAEQKAFLNKAFQL 1013 (1017)
T ss_pred             eeehhhhhcccCchhhcchHHHHHHHhhCCcceecccCCcccccccchhHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999974 5689999999999999999999999999999999964

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>KOG0451|consensus Back     alignment and domain information
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information
>PRK09212 pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 Back     alignment and domain information
>PLN02683 pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed Back     alignment and domain information
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit Back     alignment and domain information
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated Back     alignment and domain information
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated Back     alignment and domain information
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain Back     alignment and domain information
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated Back     alignment and domain information
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2 Back     alignment and domain information
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query214
2jgd_A933 E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 3e-36
2jgd_B933 E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 4e-36
2xta_A868 Crystal Structure Of The Suca Domain Of Mycobacteri 1e-24
2xt6_A1113 Crystal Structure Of Mycobacterium Smegmatis Alpha- 1e-24
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 933 Back     alignment and structure 
Iteration: 1

 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 31  TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISE 90
           +TPA ++H+LRRQ     R+PLV+M+PKSLLRHP A SS +++  GT FL  I +  I E
Sbjct: 752 STPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT-FLPAIGE--IDE 808
Query: 91  RKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAK 150
                V+++V CSGKVYYDL++ R  NN  D +A+VR+EQ+ PFP   +++   ++ + K
Sbjct: 809 LDPKGVKRVVMCSGKVYYDLLEQRRKNNQHD-VAIVRIEQLYPFPHKAMQEVLQQFAHVK 867
Query: 151 -VQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLA 209
              W QEE  NQGAW   Q  F   +     + Y GRP +ASPA G    H K+ ++L+ 
Sbjct: 868 DFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGHMSVHQKQQQDLVN 927
Query: 210 DFMTL 214
           D + +
Sbjct: 928 DALNV 932
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 933 Back     alignment and structure
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex With Acetyl-Coa (Triclinic Form) Length = 868 Back     alignment and structure
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query214
2jgd_A933 2-oxoglutarate dehydrogenase E1 component; flavopr 2e-93
2yic_A868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 9e-92
2xt6_A1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 5e-90
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Length = 933 Back     alignment and structure
 Score =  291 bits (747), Expect = 2e-93
 Identities = 78/185 (42%), Positives = 113/185 (61%), Gaps = 5/185 (2%)

Query: 31  TTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSISE 90
           +TPA ++H+LRRQ     R+PLV+M+PKSLLRHP A SS +++  GT FL  I +    E
Sbjct: 752 STPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT-FLPAIGEI--DE 808

Query: 91  RKADSVEKLVFCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNAK 150
                V+++V CSGKVYYDL++ R  NN  D +A+VR+EQ+ PFP   +++   ++ + K
Sbjct: 809 LDPKGVKRVVMCSGKVYYDLLEQRRKNNQHD-VAIVRIEQLYPFPHKAMQEVLQQFAHVK 867

Query: 151 -VQWVQEEHKNQGAWTYVQPRFNTTVNGQRKMTYVGRPTAASPATGSKMQHVKELENLLA 209
              W QEE  NQGAW   Q  F   +     + Y GRP +ASPA G    H K+ ++L+ 
Sbjct: 868 DFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGHMSVHQKQQQDLVN 927

Query: 210 DFMTL 214
           D + +
Sbjct: 928 DALNV 932
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Length = 868 Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query214
2yic_A868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 100.0
2xt6_A1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
2jgd_A933 2-oxoglutarate dehydrogenase E1 component; flavopr 100.0
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 99.74
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 99.71
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 99.66
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 99.65
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 99.62
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 99.61
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 98.8
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 98.47
1yd7_A395 2-keto acid:ferredoxin oxidoreductase subunit alph 96.16
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 96.08
3ju3_A118 Probable 2-oxoacid ferredoxin oxidoreductase, ALP; 96.01
2c42_A 1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 93.0
3l84_A632 Transketolase; TKT, structural genomics, center fo 88.26
2e6k_A651 Transketolase; structural genomics, NPPSFA, nation 86.46
1r9j_A673 Transketolase; domains, EACH of the alpha/beta typ 82.81
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
Probab=100.00  E-value=2.4e-47  Score=380.62  Aligned_cols=189  Identities=32%  Similarity=0.551  Sum_probs=171.9

Q ss_pred             CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCCCCCcccccCCCCCceEcccCCCc--cccCcccccEEE
Q psy8747          23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPEAKSSFDDMIEGTEFLRVIPDDSI--SERKADSVEKLV  100 (214)
Q Consensus        23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~a~S~l~ef~~g~~F~~vi~d~~~--~~~~~~~v~rvv  100 (214)
                      -||+|++||||+++||+||+|+.+++|+|+|||+||+|||++.++|+++||++| .|+++|++...  ...+.++|+|+|
T Consensus       676 pnm~V~~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~-~f~~~ig~~~~~~~l~~g~dv~r~I  754 (868)
T 2yic_A          676 GSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTES-KFRSVLEEPMYTDGEGDRNKVTRLL  754 (868)
T ss_dssp             TSCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSC-CCCSEECCHHHHTSSCCGGGCCEEE
T ss_pred             CCCEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCC-CceecCCcceeecccccCCceeEEE
Confidence            499999999999999999999999999999999999999999999999999765 59999987531  013568899999


Q ss_pred             EecccchHHHHHHHHhcCCCCceEEEEeeccCCCcHHHHHHHHhcCCCC-cEEEeccCcCCCCcccchHHHHHhhhCC-C
Q psy8747         101 FCSGKVYYDLIKARNDNNLGDKIAVVRVEQISPFPFDLVKKECLRYPNA-KVQWVQEEHKNQGAWTYVQPRFNTTVNG-Q  178 (214)
Q Consensus       101 lCSGKvyydL~~~r~~~~~~~~vAIvRiEQLyPfP~~~l~~~l~~y~na-~~vW~QEEP~NmGAW~~v~~~l~~~~~~-~  178 (214)
                      +|+||+||+|.+++++.|. .+++|||+|||||||.+.|.+.+++|+++ +++||||||.|+|+|++|.++|.+.+.. .
T Consensus       755 i~~G~~~~~l~aa~~~~g~-i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~~~~l~  833 (868)
T 2yic_A          755 LTSGKIYYELAARKAKENR-EDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHF  833 (868)
T ss_dssp             EECSTHHHHHHHHHHHHTC-TTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHCHHHH
T ss_pred             EEecHHHHHHHHHHHhCCC-CCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHHhhhcC
Confidence            9999999999999977773 47999999999999999999999999998 8999999999999999999999886531 2


Q ss_pred             CceeEecCCCCCCCCCCCHHHHHHHHHHHHHHhhc
Q psy8747         179 RKMTYVGRPTAASPATGSKMQHVKELENLLADFMT  213 (214)
Q Consensus       179 ~~l~yvGRp~saspAtG~~~~H~~eq~~li~~Af~  213 (214)
                      .+++|+|||.+++||+|+.+.|..||++||++||+
T Consensus       834 ~~v~~vg~~d~~~p~~g~~~~h~~~~~~~~~~a~~  868 (868)
T 2yic_A          834 TGLKRISRRAMSAPSSGSSKVHAVEQQEILDTAFG  868 (868)
T ss_dssp             TTCEEEEECCCSSSSCSCHHHHHHHHHHHHHHHTC
T ss_pred             CCeEEeccCCcCCCCCCCHHHHHHHHHHHHHHHhC
Confidence            46999999999999999999999999999999985
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Back     alignment and structure
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Back     alignment and structure
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Back     alignment and structure
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Back     alignment and structure
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum} Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query214
d2bfdb1203 Branched-chain alpha-keto acid dehydrogenase, Pyr 96.64
d1ik6a1191 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 95.34
d1w85b1192 Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d 92.32
d2c42a3157 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 91.42
d1qs0b1204 2-oxoisovalerate dehydrogenase (E1B), Pyr module { 91.22
d1umdb1186 Branched-chain alpha-keto acid dehydrogenase, Pyr 90.06
d2ozlb1192 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 89.84
d1qs0b2134 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseu 89.14
d2ozlb2138 E1-beta subunit of pyruvate dehydrogenase, C-domai 89.06
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00077  Score=55.15  Aligned_cols=41  Identities=22%  Similarity=0.206  Sum_probs=35.9

Q ss_pred             CCCEEEcCCChhhHHHHHHHhhhcCCCCceEEeCCcccccCCC
Q psy8747          23 FPPVSVGTTTPANLFHILRRQIALPFRKPLVLMTPKSLLRHPE   65 (214)
Q Consensus        23 ~NmqV~~pSTpAqyFHlLRRQ~~r~~rKPLIv~tPKSLLR~~~   65 (214)
                      -||.|+.||||+.++++|+..+..  ..|.|++.||+|.|.+.
T Consensus       157 PGl~Vv~Ps~p~Da~gll~~ai~~--~~Pvi~~E~k~Ly~~~~  197 (203)
T d2bfdb1         157 PGIKVVIPRSPFQAKGLLLSCIED--KNPCIFFEPKILYRAAA  197 (203)
T ss_dssp             TTCEEECCSSHHHHHHHHHHHHHS--SSCEEEEEEGGGTTSCC
T ss_pred             CCcEEEecCCHHHHHHHHHHHHhC--CCcEEEEeeHHHhcCCC
Confidence            499999999999999999886654  48999999999998654
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure