Psyllid ID: psy8748
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2004 | ||||||
| 242006094 | 2257 | conserved hypothetical protein [Pediculu | 0.394 | 0.350 | 0.396 | 1e-164 | |
| 270003346 | 1341 | hypothetical protein TcasGA2_TC002573 [T | 0.414 | 0.619 | 0.375 | 1e-153 | |
| 189235754 | 2313 | PREDICTED: similar to Protein dopey-1 ho | 0.414 | 0.359 | 0.375 | 1e-153 | |
| 332027745 | 346 | Guanine nucleotide-binding protein subun | 0.169 | 0.979 | 0.732 | 1e-152 | |
| 66514532 | 346 | PREDICTED: guanine nucleotide-binding pr | 0.169 | 0.979 | 0.723 | 1e-152 | |
| 380020395 | 346 | PREDICTED: guanine nucleotide-binding pr | 0.169 | 0.979 | 0.726 | 1e-152 | |
| 307195420 | 346 | Guanine nucleotide-binding protein subun | 0.169 | 0.979 | 0.723 | 1e-152 | |
| 383851264 | 346 | PREDICTED: guanine nucleotide-binding pr | 0.169 | 0.979 | 0.726 | 1e-152 | |
| 307183476 | 346 | Guanine nucleotide-binding protein subun | 0.169 | 0.979 | 0.720 | 1e-151 | |
| 156547315 | 346 | PREDICTED: guanine nucleotide-binding pr | 0.169 | 0.979 | 0.726 | 1e-151 |
| >gi|242006094|ref|XP_002423891.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507137|gb|EEB11153.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1516), Expect = e-164, Method: Compositional matrix adjust.
Identities = 351/885 (39%), Positives = 515/885 (58%), Gaps = 94/885 (10%)
Query: 595 GNSVESTHAHVLLYCGVYDSARTQYTLQTIRNMILPNSRAFLCAAATTAL--APR-SPIL 651
G +V H+H+LLYCGVYDS RT Y L T++N+IL NSR FLC +A++ + AP S +L
Sbjct: 1169 GVAVHPYHSHILLYCGVYDSCRTLYALNTLKNIILTNSRLFLCCSASSGIVNAPFPSDLL 1228
Query: 652 KLLARHRKCLFGRGFHGDIESTG--CTYSRSSMYLEVLISVCLYYIRSYYLNLGQTRLTL 709
LLARH+K +FGR FHG +S RS+MYLE+L+++CL ++RSYY NLG +LT
Sbjct: 1229 ALLARHKKSIFGRNFHGGTKSLNEYMNIYRSNMYLEILVTLCLNFVRSYYPNLGILKLTA 1288
Query: 710 EEIAGNRQVQIASVELLSVILSELAGIVRDSGKGIDTYTTYSKNLSLLQNISVFVNPFST 769
EEIAGNRQVQ+ SVE+L I ++L IVRDSGKG Y N +Q +V S+
Sbjct: 1289 EEIAGNRQVQLMSVEILMHICNKLIPIVRDSGKGFANYIADVLNRGKVQR-TVLYCIMSS 1347
Query: 770 DNSTSMMNNDFDDYFVEEKKDGTSTTSTELID-EDVKNNNSGGSGVSSQCLTLQIQLLKL 828
S N YF+E+K + + E++D D + G +G++ QIQLLK+
Sbjct: 1348 LLSIHRQQN----YFMEQK-----SFTEEILDFNDPDESGEGVAGMTEHASAFQIQLLKV 1398
Query: 829 LLSALILEHEVNTKRGE-VEPSPPSLSSVDLTGNDPKYYPGRIIPQQPMFLCALARALES 887
L + ++LE ++ ++ + V+ +SV+ T + KY P I QPMF+ + AL
Sbjct: 1399 LQALVMLEQQIECQKTDNVDGVNSKGNSVENTELESKYSPDSSISNQPMFIKCVLTALSL 1458
Query: 888 NPGLRASHQHWTTMLTCALPYLGKSLTTVVKVAIKALCANVDYLAEVYSVQNENKLKTNI 947
+R H +WT ++T +LPYLG +L +V V + +C+N++ LA YS + K N
Sbjct: 1459 KGKMRWLHYNWTELITSSLPYLGTALPHIVMVTVNQICSNIEELAGFYSNRKSEK-DENF 1517
Query: 948 PADYAITQMEALTILCHYCLLDSAQPFN-QPLHGNV------------------MYHV-- 986
P YA+TQ+EALT+LCH+C+LDS Q + QPL + + HV
Sbjct: 1518 PPGYAVTQLEALTVLCHFCILDSNQQVSPQPLSPLIGSSPSGIPGSNPAQILSNLVHVFT 1577
Query: 987 ---------SEKYNKSLKDISSKANNVGKSGKKIV-AVTSLSSGDNQCVTEKKRVNQNIY 1036
+ + ++ ++S N+ + +I+ +V +L +C+
Sbjct: 1578 SSSLVQESGKGRNQQQMETLASVRRNLLANMPRIISSVAALWQAVTECI----------- 1626
Query: 1037 HDGIDTYTTYSKNLSLLQN-ISVFVNPFSTDNSTSMMNNDFDDYFVEEKKDGTSTTSTEL 1095
D N +++N I F++P S + + + EE++ G
Sbjct: 1627 --DCDLELCVWGNPKVVKNQILGFLSPISLHHGAIFVAAVAVTW--EERRGGDQGKKVLP 1682
Query: 1096 IAMPIDTLVQTIHQVIRST-----------TINMEPSMRMEVSVLELLLHYIQL------ 1138
+A P ++ + I+ T + P+++ S++ L + ++L
Sbjct: 1683 VASPNQMVLVNLLSAIKVTPMDTLVQTVQSVVKQPPAIQGTSSIVSLDVSVLELFYTYMQ 1742
Query: 1139 -TPSTALAESWPSLLLLLREGPSLSPPSQFILMAILSQFVHRTSAPLPDRRDQKDLQDIT 1197
+ S+ L ESW SLL LLR+G L+PP+ F+++AIL++FV + P ++++Q+DLQD+
Sbjct: 1743 ISSSSQLGESWNSLLSLLRDGILLAPPALFLMLAILNEFVQKC-PPFDEKKNQRDLQDVA 1801
Query: 1198 AKLIESCAGIAGACLEQTTWLRRNLAVKEDELSNSSSDKDSDKCKFKHITVGTTVAQHSV 1257
AKLIE C +AGACLE TWLRRNLAVKED ++ S + QHSV
Sbjct: 1802 AKLIEVCGNVAGACLEHKTWLRRNLAVKEDLEVTEEENEGS----------MSVAQQHSV 1851
Query: 1258 QALSVLAQLLAPLLDVTYGSQEKERVNTLLTTLMYNVIPYLKNHSQRNAVSFHACSTLLA 1317
QA VLAQ+LAPLLDV+YGSQEK++V LLT LMYN+ PYLK+H +N SF ACS LL+
Sbjct: 1852 QAQLVLAQILAPLLDVSYGSQEKDKVAALLTNLMYNITPYLKSHLPKNLPSFAACSQLLS 1911
Query: 1318 SLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMTRVSL 1377
++S +QYTRKAWK++ +LLL+ +LFQM L CL W I+DNLM+ + +FRDLM ++S+
Sbjct: 1912 NISGFQYTRKAWKREVFELLLESSLFQMNLECLSYWTIIIDNLMTHDITSFRDLMNKISM 1971
Query: 1378 SQSNSLSLFSNKEQEYEQRAQLLKKLAFVILCSETDQFHKHIPEI 1422
SQ S +LFS++EQEYEQR+QLLK+LAFVI CSE DQ+HK +P I
Sbjct: 1972 SQGGSYTLFSSREQEYEQRSQLLKRLAFVIFCSEADQYHKFMPNI 2016
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270003346|gb|EEZ99793.1| hypothetical protein TcasGA2_TC002573 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 342/910 (37%), Positives = 520/910 (57%), Gaps = 79/910 (8%)
Query: 570 LPSNKNPNSPLPNNKNVSLRATSSAGNSVESTHAHVLLYCGVYDSARTQYTLQTIRNMIL 629
L N P P + + SS + H+H+ LY V+DS + Y LQT++N IL
Sbjct: 244 LIDNHTPTRPTDLDLRSKINVHSSKNCVLYPIHSHICLYYEVFDSNQILYALQTLKNCIL 303
Query: 630 PNSRAFLCAAATTALA--PRSPILKLLARHRKCLFGRGFHGDIESTGCTYSRSSMYLEVL 687
N + F+ AT+ + + +L LLARHRK + G F G + + R M+L+V+
Sbjct: 304 CNPQLFIKCLATSGVKDLKNNDVLNLLARHRKSVLGYSFSGKLNPEYLNFYRGYMFLDVV 363
Query: 688 ISVCLYYIRSYYLNLGQTRLTLEEIAGNRQVQIASVELLSVILSELAGIVRDSGKGIDTY 747
I +CL Y R++Y +L +T E++ N ++Q+ S+E+L VI+ +L +V ++ KG +Y
Sbjct: 364 ILICLNYARTFYPHLDDLNVTSEDLESNFKIQLESLEILDVIIRKLITMVSENSKGFASY 423
Query: 748 TTYSKNLSLLQNISVFVNPFSTDNSTSMMNNDFDDYFVEEKKDGTSTTSTELIDEDVKNN 807
LQ + + TS+ N D + F EE + +L D N
Sbjct: 424 IGDMLIKCKLQKVVLHCL------LTSVRNFDEEMTFAEE---VLLFNNFQLYDA----N 470
Query: 808 NSGGSGVSSQCLTLQIQLLKLLLSALILEHEV--------NTKRGEVEPSPPSLSSVDLT 859
+ G V + Q +LL+L+ S +ILE+ V ++ + V PS T
Sbjct: 471 HKVGDHVEA----YQTRLLRLIHSLIILEYHVFSSAPPVSSSSQESVTPS---------T 517
Query: 860 GNDPKYYPGRIIPQQPMFLCALARALESNPGLRASHQHWTTMLTCALPYLGKSLTTVVKV 919
G Y P +IPQQ +FL A+ AL + ++ H+ W M+TC LPY G+++ +
Sbjct: 518 GEHLNYTPTILIPQQNIFLSAVMSALR-HTHMKNLHEKWLNMITCCLPYFGENIKQITIS 576
Query: 920 AIKALCANVDYLAEVYSVQNENKLKTNIPADYAITQMEALTILCHYCLLDSAQPFNQ--- 976
I +C N++ +A Y+ ++++ I +DYA+TQ+E+LTILCHYCLLDS+Q NQ
Sbjct: 577 VIHQICNNIEEIACKYT---QSEIHGEICSDYAVTQLESLTILCHYCLLDSSQTVNQLNI 633
Query: 977 ------PLH--GNVMYHVSEKYNK--SLKDISSKANNVGKSGKKIVAVTSLSSGDNQCVT 1026
P+ G + ++ + L + +SK N+ + ++ + + ++
Sbjct: 634 PASSSTPISNPGEIFNNLVSAFFAPVGLDNSTSKQNSDHYQNARKTILSHMP----RIIS 689
Query: 1027 EKKRVNQNIYHDGIDTYTTYSKNLSLLQNISVFVNPFSTDNSTSMM----------NNDF 1076
++ Q I + D Y + + Q + F++P S ++ S + N F
Sbjct: 690 SVAKLWQTIVNLENDNNGVYGSSKVVKQQLLEFLSPISVNHGASFLAAIAVAWYERRNLF 749
Query: 1077 DDY--FVEEKKDGTSTTS---TELIAMPIDTLVQTIHQVIRST--TINMEPSMRMEVSVL 1129
+ + E G + + + +P+D LVQT+ VI++ T + + ++VSVL
Sbjct: 750 TNIKAVLPEPNAGQNNLVYLISAIRVIPLDNLVQTVTAVIKNPPPTEGLSADICLDVSVL 809
Query: 1130 ELLLHYIQLTPSTALAESWPSLLLLLREGPSLSPPSQFILMAILSQFVHRTSAPLPDRRD 1189
EL Y++ T L E+W SLL L+REG SLSPP+QF+L A+L + + + PL +R+D
Sbjct: 810 ELFYCYMRNASPTQLTEAWSSLLALIREGCSLSPPAQFLLAALLHELMIKC-CPLEERKD 868
Query: 1190 QKDLQDITAKLIESCAGIAGACLEQTTWLRRNLAVKEDELSNSSSDKDSDKCKFKHITVG 1249
QKDLQD+TAKLIE + + G+CLEQTTWLRRNLAVKE + + + D +S I VG
Sbjct: 869 QKDLQDVTAKLIECVSQVCGSCLEQTTWLRRNLAVKEQD-EDLTPDTNSLTGSSSDIVVG 927
Query: 1250 TTVAQHSVQALSVLAQLLAPLLDVTYGSQEKERVNTLLTTLMYNVIPYLKNHSQRNAVSF 1309
+ HSVQA VL+++LAP+LD+ +GS EK++V T+LT+LMYN++PYLK H+ +N SF
Sbjct: 928 NS---HSVQAQLVLSEILAPILDICFGSSEKDKVVTILTSLMYNIVPYLKTHTMKNMPSF 984
Query: 1310 HACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFR 1369
HACS LLA+LSSYQYTRKAWKKD +LLLD +LFQM+ C++ WK IVDNLM+ + TFR
Sbjct: 985 HACSKLLAALSSYQYTRKAWKKDVFELLLDNSLFQMDYNCIKYWKIIVDNLMTHDNTTFR 1044
Query: 1370 DLMTRVSLSQSNSLSLFSNKEQEYEQRAQLLKKLAFVILCSETDQFHKHIPEITGLTEGA 1429
DLM+RVSL+QS SLS+FS++EQEYEQRAQLLK+LA+VI CSE DQ+ K++P+I +
Sbjct: 1045 DLMSRVSLTQSGSLSIFSSREQEYEQRAQLLKRLAYVIFCSEMDQYAKYMPDIQEQLTSS 1104
Query: 1430 LIESCAGIAG 1439
L + G+
Sbjct: 1105 LRLNVPGVQA 1114
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189235754|ref|XP_968045.2| PREDICTED: similar to Protein dopey-1 homolog [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 342/910 (37%), Positives = 520/910 (57%), Gaps = 79/910 (8%)
Query: 570 LPSNKNPNSPLPNNKNVSLRATSSAGNSVESTHAHVLLYCGVYDSARTQYTLQTIRNMIL 629
L N P P + + SS + H+H+ LY V+DS + Y LQT++N IL
Sbjct: 1216 LIDNHTPTRPTDLDLRSKINVHSSKNCVLYPIHSHICLYYEVFDSNQILYALQTLKNCIL 1275
Query: 630 PNSRAFLCAAATTALA--PRSPILKLLARHRKCLFGRGFHGDIESTGCTYSRSSMYLEVL 687
N + F+ AT+ + + +L LLARHRK + G F G + + R M+L+V+
Sbjct: 1276 CNPQLFIKCLATSGVKDLKNNDVLNLLARHRKSVLGYSFSGKLNPEYLNFYRGYMFLDVV 1335
Query: 688 ISVCLYYIRSYYLNLGQTRLTLEEIAGNRQVQIASVELLSVILSELAGIVRDSGKGIDTY 747
I +CL Y R++Y +L +T E++ N ++Q+ S+E+L VI+ +L +V ++ KG +Y
Sbjct: 1336 ILICLNYARTFYPHLDDLNVTSEDLESNFKIQLESLEILDVIIRKLITMVSENSKGFASY 1395
Query: 748 TTYSKNLSLLQNISVFVNPFSTDNSTSMMNNDFDDYFVEEKKDGTSTTSTELIDEDVKNN 807
LQ + + TS+ N D + F EE + +L D N
Sbjct: 1396 IGDMLIKCKLQKVVLHCL------LTSVRNFDEEMTFAEE---VLLFNNFQLYDA----N 1442
Query: 808 NSGGSGVSSQCLTLQIQLLKLLLSALILEHEV--------NTKRGEVEPSPPSLSSVDLT 859
+ G V + Q +LL+L+ S +ILE+ V ++ + V PS T
Sbjct: 1443 HKVGDHVEA----YQTRLLRLIHSLIILEYHVFSSAPPVSSSSQESVTPS---------T 1489
Query: 860 GNDPKYYPGRIIPQQPMFLCALARALESNPGLRASHQHWTTMLTCALPYLGKSLTTVVKV 919
G Y P +IPQQ +FL A+ AL + ++ H+ W M+TC LPY G+++ +
Sbjct: 1490 GEHLNYTPTILIPQQNIFLSAVMSALR-HTHMKNLHEKWLNMITCCLPYFGENIKQITIS 1548
Query: 920 AIKALCANVDYLAEVYSVQNENKLKTNIPADYAITQMEALTILCHYCLLDSAQPFNQ--- 976
I +C N++ +A Y+ ++++ I +DYA+TQ+E+LTILCHYCLLDS+Q NQ
Sbjct: 1549 VIHQICNNIEEIACKYT---QSEIHGEICSDYAVTQLESLTILCHYCLLDSSQTVNQLNI 1605
Query: 977 ------PLH--GNVMYHVSEKYNK--SLKDISSKANNVGKSGKKIVAVTSLSSGDNQCVT 1026
P+ G + ++ + L + +SK N+ + ++ + + ++
Sbjct: 1606 PASSSTPISNPGEIFNNLVSAFFAPVGLDNSTSKQNSDHYQNARKTILSHMP----RIIS 1661
Query: 1027 EKKRVNQNIYHDGIDTYTTYSKNLSLLQNISVFVNPFSTDNSTSMM----------NNDF 1076
++ Q I + D Y + + Q + F++P S ++ S + N F
Sbjct: 1662 SVAKLWQTIVNLENDNNGVYGSSKVVKQQLLEFLSPISVNHGASFLAAIAVAWYERRNLF 1721
Query: 1077 DDY--FVEEKKDGTSTTS---TELIAMPIDTLVQTIHQVIRST--TINMEPSMRMEVSVL 1129
+ + E G + + + +P+D LVQT+ VI++ T + + ++VSVL
Sbjct: 1722 TNIKAVLPEPNAGQNNLVYLISAIRVIPLDNLVQTVTAVIKNPPPTEGLSADICLDVSVL 1781
Query: 1130 ELLLHYIQLTPSTALAESWPSLLLLLREGPSLSPPSQFILMAILSQFVHRTSAPLPDRRD 1189
EL Y++ T L E+W SLL L+REG SLSPP+QF+L A+L + + + PL +R+D
Sbjct: 1782 ELFYCYMRNASPTQLTEAWSSLLALIREGCSLSPPAQFLLAALLHELMIK-CCPLEERKD 1840
Query: 1190 QKDLQDITAKLIESCAGIAGACLEQTTWLRRNLAVKEDELSNSSSDKDSDKCKFKHITVG 1249
QKDLQD+TAKLIE + + G+CLEQTTWLRRNLAVKE + + + D +S I VG
Sbjct: 1841 QKDLQDVTAKLIECVSQVCGSCLEQTTWLRRNLAVKEQD-EDLTPDTNSLTGSSSDIVVG 1899
Query: 1250 TTVAQHSVQALSVLAQLLAPLLDVTYGSQEKERVNTLLTTLMYNVIPYLKNHSQRNAVSF 1309
+ HSVQA VL+++LAP+LD+ +GS EK++V T+LT+LMYN++PYLK H+ +N SF
Sbjct: 1900 NS---HSVQAQLVLSEILAPILDICFGSSEKDKVVTILTSLMYNIVPYLKTHTMKNMPSF 1956
Query: 1310 HACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFR 1369
HACS LLA+LSSYQYTRKAWKKD +LLLD +LFQM+ C++ WK IVDNLM+ + TFR
Sbjct: 1957 HACSKLLAALSSYQYTRKAWKKDVFELLLDNSLFQMDYNCIKYWKIIVDNLMTHDNTTFR 2016
Query: 1370 DLMTRVSLSQSNSLSLFSNKEQEYEQRAQLLKKLAFVILCSETDQFHKHIPEITGLTEGA 1429
DLM+RVSL+QS SLS+FS++EQEYEQRAQLLK+LA+VI CSE DQ+ K++P+I +
Sbjct: 2017 DLMSRVSLTQSGSLSIFSSREQEYEQRAQLLKRLAYVIFCSEMDQYAKYMPDIQEQLTSS 2076
Query: 1430 LIESCAGIAG 1439
L + G+
Sbjct: 2077 LRLNVPGVQA 2086
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332027745|gb|EGI67812.1| Guanine nucleotide-binding protein subunit beta-2 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1411), Expect = e-152, Method: Compositional matrix adjust.
Identities = 249/340 (73%), Positives = 287/340 (84%), Gaps = 1/340 (0%)
Query: 1640 QTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVH 1699
+T LKKEL LI+KCKEEQ KQ DT LE + DAPKV+L KK LKGHINKVNSVH
Sbjct: 7 ETVVLKKELEALINKCKEEQKKQQDTTLEQACGGVADAPKVRLSTKKMLKGHINKVNSVH 66
Query: 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCT 1759
YSGDSRHCV+GSLDGKLIIWDTWTGNK QVIPLRSAWVMSVAFA SGNFVACGGMDNMCT
Sbjct: 67 YSGDSRHCVTGSLDGKLIIWDTWTGNKVQVIPLRSAWVMSVAFAPSGNFVACGGMDNMCT 126
Query: 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV 1819
VYD+NNRD+TG+AK++RELLGYEGFLSSCRF+DD ++TGSGDMKI W+LE ++ +
Sbjct: 127 VYDVNNRDATGSAKIVRELLGYEGFLSSCRFLDDKKIITGSGDMKICIWDLEANKKTTDF 186
Query: 1820 AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL 1879
+AH GDVVSISLSPDG +VTGSVDK+CKLWD RE+K QTFFGHEADVNSVC+HPSG
Sbjct: 187 -EAHSGDVVSISLSPDGNTYVTGSVDKTCKLWDLREEKAKQTFFGHEADVNSVCYHPSGQ 245
Query: 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939
F T SEDKTARL+D R+DQQ+ T+ PPN N GFTSC +S SGR+IFCGSDDN++H+WD
Sbjct: 246 GFVTASEDKTARLWDFRSDQQLTTFKPPNSNPGFTSCGLSLSGRFIFCGSDDNSIHIWDT 305
Query: 1940 LKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
LK HNG+LSGHENRVTS+ +S NGMA+ + SWDQ V++W
Sbjct: 306 LKNQHNGILSGHENRVTSLCVSGNGMAVASCSWDQNVRIW 345
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66514532|ref|XP_624335.1| PREDICTED: guanine nucleotide-binding protein subunit beta-2-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1410), Expect = e-152, Method: Compositional matrix adjust.
Identities = 246/340 (72%), Positives = 293/340 (86%), Gaps = 1/340 (0%)
Query: 1640 QTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVH 1699
+T LKKEL LI++CKE+Q KQ DT LE+ +S+ DAPKVKL KK LKGHINKVNSVH
Sbjct: 7 ETIALKKELEDLINRCKEDQKKQQDTTLEETCSSVADAPKVKLSTKKLLKGHINKVNSVH 66
Query: 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCT 1759
YSGDSRHCV+GSLDGKLIIWD+WTGNK QVIPLRSAWVMSVAFA SGNFVACGGMDNMCT
Sbjct: 67 YSGDSRHCVTGSLDGKLIIWDSWTGNKVQVIPLRSAWVMSVAFAPSGNFVACGGMDNMCT 126
Query: 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV 1819
+YD+NNRD+TG+AK++RELLGYEGFLSSCRF++D ++TGSGDMKI W+LE ++ +
Sbjct: 127 IYDVNNRDATGSAKIVRELLGYEGFLSSCRFLEDKKIITGSGDMKICIWDLEANKKTTDF 186
Query: 1820 AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL 1879
AH GDVVSISLSPDG +VTGSVD++CKLWD RE+K QTFFGHEADVNSVC+HPSG
Sbjct: 187 C-AHAGDVVSISLSPDGNTYVTGSVDRTCKLWDLREEKAKQTFFGHEADVNSVCYHPSGQ 245
Query: 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939
AF T SEDKTARL+D+R+DQQ+AT+ PPN N G+TSC +S SGR+IFCGSDDN++H+WD
Sbjct: 246 AFVTASEDKTARLWDLRSDQQLATFKPPNSNPGYTSCGLSLSGRFIFCGSDDNSIHIWDT 305
Query: 1940 LKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
LK HNGVL+GHENRVTS+S++ NGMA+ + SWDQ V++W
Sbjct: 306 LKNQHNGVLTGHENRVTSLSVTGNGMAIASCSWDQNVRIW 345
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380020395|ref|XP_003694072.1| PREDICTED: guanine nucleotide-binding protein subunit beta-2-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 247/340 (72%), Positives = 292/340 (85%), Gaps = 1/340 (0%)
Query: 1640 QTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVH 1699
+T LKKEL LI++CKE+Q KQ DT LE+ S+ DAPKVKL KK LKGHINKVNSVH
Sbjct: 7 ETIALKKELEDLINRCKEDQKKQQDTTLEETCNSVADAPKVKLSTKKLLKGHINKVNSVH 66
Query: 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCT 1759
YSGDSRHCV+GSLDGKLIIWD+WTGNK QVIPLRSAWVMSVAFA SGNFVACGGMDNMCT
Sbjct: 67 YSGDSRHCVTGSLDGKLIIWDSWTGNKVQVIPLRSAWVMSVAFAPSGNFVACGGMDNMCT 126
Query: 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV 1819
VYD+NNRD+TG+AK++RELLGYEGFLSSCRF++D ++TGSGDMKI W+LE ++ +
Sbjct: 127 VYDVNNRDATGSAKIVRELLGYEGFLSSCRFLEDKKIITGSGDMKICIWDLEANKKTTDF 186
Query: 1820 AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL 1879
AH GDVVSISLSPDG +VTGSVD++CKLWD RE+K QTFFGHEADVNSVC+HPSG
Sbjct: 187 C-AHAGDVVSISLSPDGNTYVTGSVDRTCKLWDLREEKAKQTFFGHEADVNSVCYHPSGQ 245
Query: 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939
AF T SEDKTARL+D+R+DQQ+AT+ PPN N G+TSC +S SGR+IFCGSDDN++H+WD
Sbjct: 246 AFVTASEDKTARLWDLRSDQQLATFKPPNSNPGYTSCGLSLSGRFIFCGSDDNSIHIWDT 305
Query: 1940 LKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
LK HNGVL+GHENRVTS+S++ NGMA+ + SWDQ V++W
Sbjct: 306 LKNQHNGVLTGHENRVTSLSVTGNGMAIASCSWDQNVRIW 345
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307195420|gb|EFN77306.1| Guanine nucleotide-binding protein subunit beta-2 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 246/340 (72%), Positives = 290/340 (85%), Gaps = 1/340 (0%)
Query: 1640 QTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVH 1699
+T LKKEL LI KCKEEQ KQ DT LE+ + + DA KVKL KK LKGHINKVNSVH
Sbjct: 7 ETTALKKELESLISKCKEEQKKQQDTTLEEACSGVSDASKVKLSTKKLLKGHINKVNSVH 66
Query: 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCT 1759
YSGDSRHCV+GSLDGKLIIWD+WTGNK QVIPLRSAWVMSVAFA SGNFVACGGMDNMCT
Sbjct: 67 YSGDSRHCVTGSLDGKLIIWDSWTGNKVQVIPLRSAWVMSVAFAPSGNFVACGGMDNMCT 126
Query: 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV 1819
VYD+N+RD+TG+AK++RELLGYEGFLSSCRF++D ++TGSGDMKI W+LE ++ +
Sbjct: 127 VYDVNSRDATGSAKIVRELLGYEGFLSSCRFLEDKRIITGSGDMKICIWDLEANKKTTDF 186
Query: 1820 AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL 1879
+AH GDVVSISLSPDGQ +VTGSVDK+CKLWD RE+K QTFFGH+ADVNSVC+HPSG
Sbjct: 187 -EAHAGDVVSISLSPDGQTYVTGSVDKTCKLWDLREEKAKQTFFGHDADVNSVCYHPSGQ 245
Query: 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939
F T SEDKTARL+D R+DQQ+AT+ PPN N GFTSC +S SGR+IFCGSDDN++H+WD
Sbjct: 246 GFVTASEDKTARLWDFRSDQQLATFKPPNSNPGFTSCGLSLSGRFIFCGSDDNSIHIWDT 305
Query: 1940 LKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
LK HNGVLSGH+NRVTS+ ++ NGMA+ + SWDQ+V++W
Sbjct: 306 LKNQHNGVLSGHDNRVTSLCVAGNGMAVASCSWDQYVRIW 345
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383851264|ref|XP_003701154.1| PREDICTED: guanine nucleotide-binding protein subunit beta-2-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 247/340 (72%), Positives = 293/340 (86%), Gaps = 1/340 (0%)
Query: 1640 QTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVH 1699
+T LKKEL LI+KCKE+Q KQ DT LE+ +S+ DAPKVKL KK LKGHINKVNSVH
Sbjct: 7 ETVALKKELEDLINKCKEDQKKQQDTTLEEACSSVADAPKVKLSTKKLLKGHINKVNSVH 66
Query: 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCT 1759
YSGDSRHCV+GSLDGKLIIWD+WTGNK QVIPLRSAWVMSVAFA SGNFVACGGMDNMCT
Sbjct: 67 YSGDSRHCVTGSLDGKLIIWDSWTGNKVQVIPLRSAWVMSVAFAPSGNFVACGGMDNMCT 126
Query: 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV 1819
VYD+NNRD+TG+AK++RELLGYEGFLSSCRF++D ++TGSGDMKI W+LE ++ +
Sbjct: 127 VYDVNNRDATGSAKIVRELLGYEGFLSSCRFLEDKRIITGSGDMKICIWDLEANKKTTDF 186
Query: 1820 AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL 1879
AH GDVVSISLSPDG +VTGSVD++CKLWD RE+ QTFFGHEADVNSVC+HPSG
Sbjct: 187 C-AHAGDVVSISLSPDGNTYVTGSVDRTCKLWDLREETAKQTFFGHEADVNSVCYHPSGH 245
Query: 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939
AF T SEDKTARL+D+R+DQQ+AT+ PP+ N G+TSC +SSSGR+IFCGSDDN++H+WD
Sbjct: 246 AFVTASEDKTARLWDLRSDQQLATFKPPSSNPGYTSCGLSSSGRFIFCGSDDNSIHIWDT 305
Query: 1940 LKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
LK +NGVLSGHENRVTS+S++ NGMA+ + SWDQ V++W
Sbjct: 306 LKNQYNGVLSGHENRVTSLSVAGNGMAVASCSWDQNVRIW 345
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307183476|gb|EFN70275.1| Guanine nucleotide-binding protein subunit beta-2 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 245/340 (72%), Positives = 288/340 (84%), Gaps = 1/340 (0%)
Query: 1640 QTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVH 1699
+T LKKEL LI+KCKEEQ KQ DT LE + APKV+L K+ LKGHINKVNSVH
Sbjct: 7 ETVALKKELEDLINKCKEEQKKQQDTTLEQACNGVAAAPKVRLTTKRLLKGHINKVNSVH 66
Query: 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCT 1759
YSGD+RHCV+GSLDGKLIIWD+W+GNK QVIPLRSAWVMSVAFAQSGNFVACGGMDNMCT
Sbjct: 67 YSGDNRHCVTGSLDGKLIIWDSWSGNKVQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCT 126
Query: 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV 1819
VYD+NNRD+TG+AK++RELLGYEGFLSSCRF+DD ++TGSGDMKI W+LE ++ +
Sbjct: 127 VYDVNNRDATGSAKIVRELLGYEGFLSSCRFLDDKKIITGSGDMKICIWDLEANKKTTDF 186
Query: 1820 AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL 1879
+AH GDVVSISLSPDG +VTGSVDK+CKLWD RE+K QTF GH+ADVNSVC+HPSG
Sbjct: 187 -EAHAGDVVSISLSPDGNTYVTGSVDKTCKLWDLREEKAKQTFIGHDADVNSVCYHPSGQ 245
Query: 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939
F T SEDKTARL+D R+DQQ+AT+ PPN N GFTSC +S SGR+IFCGSDDN++H+WD
Sbjct: 246 GFVTASEDKTARLWDFRSDQQLATFKPPNSNPGFTSCGLSLSGRFIFCGSDDNSIHIWDT 305
Query: 1940 LKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
LK HNGVLSGHENRVTS+S++ NGMA+ + SWDQ V++W
Sbjct: 306 LKNQHNGVLSGHENRVTSLSVTDNGMAVASCSWDQNVRIW 345
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156547315|ref|XP_001601751.1| PREDICTED: guanine nucleotide-binding protein subunit beta-2-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 247/340 (72%), Positives = 288/340 (84%), Gaps = 1/340 (0%)
Query: 1640 QTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVH 1699
+T LKKEL LI+KCKE+Q K DT +EDV +S+ DAPK+KL KK LKGHINKVNSVH
Sbjct: 7 ETIALKKELDDLINKCKEDQKKCQDTTIEDVCSSVADAPKIKLSTKKMLKGHINKVNSVH 66
Query: 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCT 1759
+SGDSRHCV+GSLDGKLIIWDTWTGNK QVIPLRSAWVMSVAFA SGNFVACGGMDNMCT
Sbjct: 67 FSGDSRHCVTGSLDGKLIIWDTWTGNKVQVIPLRSAWVMSVAFAPSGNFVACGGMDNMCT 126
Query: 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV 1819
VYD+NNRD+TG+AK+ RELLGYEGFLSSCRF+DD L+TGSGDMKI W+LE ++ +
Sbjct: 127 VYDVNNRDATGSAKITRELLGYEGFLSSCRFLDDGHLITGSGDMKICIWDLEANKKTTDF 186
Query: 1820 AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL 1879
A H GD+ S+SL PDG ++TGSVD++CKLWD RE+ QTFFGHEADVNSVC+HPSG
Sbjct: 187 A-GHAGDIASLSLGPDGNTYITGSVDRTCKLWDLREEVAHQTFFGHEADVNSVCYHPSGN 245
Query: 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939
AF T SEDKTARL+D+RADQQIA++ PPN N GFTSC +S SGR+IFCG+DDNN+H+WD
Sbjct: 246 AFVTASEDKTARLWDLRADQQIASFKPPNSNPGFTSCGLSFSGRFIFCGTDDNNIHIWDT 305
Query: 1940 LKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
LK HNGVL GHENRVTS+S+S NGMA+V+ SWDQ +VW
Sbjct: 306 LKVQHNGVLQGHENRVTSLSVSGNGMAMVSCSWDQNCRVW 345
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2004 | ||||||
| FB|FBgn0004623 | 346 | Gbeta76C "G protein beta-subun | 0.169 | 0.979 | 0.632 | 1e-122 | |
| UNIPROTKB|Q292H2 | 2629 | GA13490 "Protein dopey-1 homol | 0.157 | 0.120 | 0.439 | 5e-102 | |
| FB|FBgn0034400 | 2599 | CG15099 [Drosophila melanogast | 0.157 | 0.121 | 0.435 | 1.8e-99 | |
| ZFIN|ZDB-GENE-040426-2855 | 340 | gnb1b "guanine nucleotide bind | 0.166 | 0.982 | 0.489 | 1.6e-90 | |
| ZFIN|ZDB-GENE-030131-823 | 340 | gnb1a "guanine nucleotide bind | 0.166 | 0.982 | 0.489 | 1.6e-90 | |
| WB|WBGene00001679 | 340 | gpb-1 [Caenorhabditis elegans | 0.166 | 0.982 | 0.489 | 6.8e-90 | |
| UNIPROTKB|P62871 | 340 | GNB1 "Guanine nucleotide-bindi | 0.166 | 0.982 | 0.483 | 1.1e-89 | |
| UNIPROTKB|P62872 | 340 | GNB1 "Guanine nucleotide-bindi | 0.166 | 0.982 | 0.483 | 1.1e-89 | |
| UNIPROTKB|P62873 | 340 | GNB1 "Guanine nucleotide-bindi | 0.166 | 0.982 | 0.483 | 1.1e-89 | |
| MGI|MGI:95781 | 340 | Gnb1 "guanine nucleotide bindi | 0.166 | 0.982 | 0.483 | 1.1e-89 |
| FB|FBgn0004623 Gbeta76C "G protein beta-subunit 76C" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1211 (431.4 bits), Expect = 1.0e-122, P = 1.0e-122
Identities = 215/340 (63%), Positives = 268/340 (78%)
Query: 1640 QTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVH 1699
+T +L E+ +I K K++Q +AD L D M D PK++ KK LKGHINKVNSVH
Sbjct: 7 ETQKLYDEINGMIQKFKDDQKSKADCTLADKCGDMGDVPKIRFSSKKILKGHINKVNSVH 66
Query: 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCT 1759
++GDSRHCV+GSLDGKLIIWDTWT NK Q+IPLRSAWVM+VAF+ SGNFVACGGMDN CT
Sbjct: 67 FAGDSRHCVTGSLDGKLIIWDTWTANKVQIIPLRSAWVMTVAFSPSGNFVACGGMDNQCT 126
Query: 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV 1819
VYD+NNRD++G AK+++EL+GYEGFLSSCRF+DD L+TGSGDMKI W+LE G + +
Sbjct: 127 VYDVNNRDASGVAKMVKELMGYEGFLSSCRFLDDGHLITGSGDMKICHWDLEKGVKTMDF 186
Query: 1820 AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL 1879
H GD+ +SLSPD + ++TGSVDK+ KLWD RE+ Q FFGH+ DV+SVC+HPSG
Sbjct: 187 -NGHAGDIAGLSLSPDMKTYITGSVDKTAKLWDVREEGHKQMFFGHDMDVSSVCYHPSGF 245
Query: 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939
FA+ SED+TAR++D+RADQQIA Y PP KN+GFTSCA+S+SGRY+ CG + NVH WD
Sbjct: 246 GFASCSEDQTARMYDLRADQQIAQYEPPQKNTGFTSCALSTSGRYLMCGGIEGNVHSWDT 305
Query: 1940 LKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
+K H G LSGHENR+T ISL PNGM L ++SWDQ V++W
Sbjct: 306 MKQRHTGTLSGHENRITCISLCPNGMCLASTSWDQQVRLW 345
|
|
| UNIPROTKB|Q292H2 GA13490 "Protein dopey-1 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 5.0e-102, Sum P(6) = 5.0e-102
Identities = 144/328 (43%), Positives = 200/328 (60%)
Query: 1098 MPIDTLVQTIHQVIRSTT-INMEPS-MRMEVSVLELLLHYIQLTPSTALAESWXXXXXXX 1155
MP+D+ V T+HQV+RS I+ P+ + +EVS LEL Y++ P T LA++W
Sbjct: 2057 MPMDSFVMTLHQVVRSPPPIHRPPAHLSIEVSALELFYFYMKSAPGTQLADAWSSLLALI 2116
Query: 1156 XXXXXXXXXXQFILMAILSQFVHRT-SAPLPDRRDQKDLQDITAKLIESCAGIAGACLEQ 1214
QF L+ +L++FV R P D+++ ++L D+T++L++S +G+AG+CLEQ
Sbjct: 2117 RDGLNLSPPAQFALLMLLNEFVQRCPQMPFQDKKEVRELHDVTSRLVDSLSGVAGSCLEQ 2176
Query: 1215 TTWLRRNLAVXXXXXXXXXXXXXXXXXXXXHITVGTTVAQHXXXXXXXXXXXXXXXXDVT 1274
TTWLRRNLAV I G + Q+ DV
Sbjct: 2177 TTWLRRNLAVKEDTDGLAKDNS---------IGGGGGIQQYSLQAQSVLATILSNLLDVA 2227
Query: 1275 YGSQEKERVNTLLTTLMYNVIPYLKNHSQRNAVSFHACSTLLASLSSYQYTRKAWKKDAM 1334
YGSQEK++V ++T L+YN+ PYLKNH+ RN F+ACS LLASLS YQYTRKAW+KD +
Sbjct: 2228 YGSQEKDKVVNIVTPLLYNITPYLKNHTARNVPFFYACSALLASLSGYQYTRKAWRKDML 2287
Query: 1335 DLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMTRVXXXXXXXXXXXXXKEQEYE 1394
DLLLD + FQM + CL W+ I+D+LM+ + TFR+LMTRV +EQE+E
Sbjct: 2288 DLLLDNSFFQMHISCLPFWRMIMDSLMTYDNTTFRELMTRVSLSQAGSLNIFTSREQEFE 2347
Query: 1395 QRAQLLKKLAFVILCSETDQFHKHIPEI 1422
QR LLK+LAFVI CSE DQ +K++P+I
Sbjct: 2348 QRGMLLKRLAFVIYCSEFDQHNKYMPDI 2375
|
|
| FB|FBgn0034400 CG15099 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 1.8e-99, Sum P(5) = 1.8e-99
Identities = 143/328 (43%), Positives = 198/328 (60%)
Query: 1098 MPIDTLVQTIHQVIRSTT-INMEPS-MRMEVSVLELLLHYIQLTPSTALAESWXXXXXXX 1155
MP+D+ V T+H V+RS I+ P+ + +EVS LEL Y++ P+ LA++W
Sbjct: 2028 MPMDSFVMTLHHVVRSPPPIHRPPAQLSIEVSALELFYFYMKSAPAPQLADAWSSLLALI 2087
Query: 1156 XXXXXXXXXXQFILMAILSQFVHRT-SAPLPDRRDQKDLQDITAKLIESCAGIAGACLEQ 1214
QF L+ +L++FV R P D+++ ++L D+T++L++S + +AG+CLEQ
Sbjct: 2088 RDGLNLTPPAQFALLMLLNEFVQRCPQMPFQDKKEVRELHDVTSRLVDSLSSVAGSCLEQ 2147
Query: 1215 TTWLRRNLAVXXXXXXXXXXXXXXXXXXXXHITVGTTVAQHXXXXXXXXXXXXXXXXDVT 1274
TTWLRRNLAV G + Q+ DV
Sbjct: 2148 TTWLRRNLAVKEDTDGLAKDNSVG----------GGGLQQYSLQAQSVLAAILSNLLDVA 2197
Query: 1275 YGSQEKERVNTLLTTLMYNVIPYLKNHSQRNAVSFHACSTLLASLSSYQYTRKAWKKDAM 1334
YGSQEK++V ++T L+YN+ PYLKNH+ RN F+ACS LLASLS YQYTRKAW+KD +
Sbjct: 2198 YGSQEKDKVVNIVTPLLYNITPYLKNHTARNVPFFYACSALLASLSGYQYTRKAWRKDML 2257
Query: 1335 DLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMTRVXXXXXXXXXXXXXKEQEYE 1394
DLLLD A FQM L CL W+ I+D+LM+ + TFR+LMTRV ++QEYE
Sbjct: 2258 DLLLDNAFFQMHLSCLPFWRMIMDSLMTYDNTTFRELMTRVSLSQAGSLNIFTSRDQEYE 2317
Query: 1395 QRAQLLKKLAFVILCSETDQFHKHIPEI 1422
QRA LLK+LAFVI CSE DQ +K++P+I
Sbjct: 2318 QRAMLLKRLAFVIYCSEFDQHNKYMPDI 2345
|
|
| ZFIN|ZDB-GENE-040426-2855 gnb1b "guanine nucleotide binding protein (G protein), beta polypeptide 1b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.6e-90, P = 1.6e-90
Identities = 165/337 (48%), Positives = 236/337 (70%)
Query: 1643 ELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG 1702
+L++E QL ++ ++ + AD L +TA++ ++++ +++L+GH+ K+ ++H+
Sbjct: 6 QLRQEAEQLKNQIRDARKACADATLSQITANIDPVGRIQMRTRRTLRGHLAKIYAMHWGT 65
Query: 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
DSR VS S DGKLIIWD++T NK IPLRS+WVM+ A+A SGN+VACGG+DN+C++Y
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYS 125
Query: 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA 1822
L R+ G +V REL G+ G+LS CRF+DD ++T SGD W++ETGQ+ A
Sbjct: 126 LKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFA-G 182
Query: 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA 1882
H GDV+S+SL+PD + FV+G+ D S KLWD RE C QTF GHE+D+N++CF P+G AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDIREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 1883 TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942
TGS+D T RLFD+RADQ++ Y N G TS A S SGR + G DD N +VWD LK
Sbjct: 243 TGSDDATCRLFDLRADQELMVYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTLKA 302
Query: 1943 THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
GVL+GH+NRV+ + ++ +GMA+ T SWD F+K+W
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
|
| ZFIN|ZDB-GENE-030131-823 gnb1a "guanine nucleotide binding protein (G protein), beta polypeptide 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.6e-90, P = 1.6e-90
Identities = 165/337 (48%), Positives = 237/337 (70%)
Query: 1643 ELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG 1702
+L++E QL ++ ++ + AD L +TA++ ++++ +++L+GH+ K+ ++H+
Sbjct: 6 QLRQEAEQLKNQIRDARKACADATLSQITANIDPVGRIQMRTRRTLRGHLAKIYAMHWGT 65
Query: 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
DSR VS S DGKLIIWD++T NK IPLRS+WVM+ A+A SGN+VACGG+DN+C++Y+
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA 1822
L R+ G +V REL G+ G+LS CRF+DD ++T SGD W++ETGQ+ A
Sbjct: 126 LKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFA-G 182
Query: 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA 1882
H GDV+S+SL+PD + FV+G+ D S KLWD RE C QTF GHE+D+N++CF P+G AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 1883 TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942
TGS+D T RLFD+RADQ++ Y N G TS A S SGR + G DD N +VWD LK
Sbjct: 243 TGSDDATCRLFDLRADQELMVYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 1943 THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
GVL+GH+NRV+ + ++ +GMA+ T SWD F+K+W
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
|
| WB|WBGene00001679 gpb-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 6.8e-90, P = 6.8e-90
Identities = 165/337 (48%), Positives = 237/337 (70%)
Query: 1643 ELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG 1702
+L++E QL + +E + DT L V +++ ++++ +++L+GH+ K+ ++H++
Sbjct: 6 QLRQEAEQLKSQIREARKSANDTTLATVASNLEPIGRIQMRTRRTLRGHLAKIYAMHWAS 65
Query: 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
DSR+ VS S DGKLI+WD++T NK IPLRS+WVM+ A+A SG+FVACGG+DN+C++Y
Sbjct: 66 DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS 125
Query: 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA 1822
L R+ G +V REL G+ G+LS CRF+DD ++T SGDM W++ETGQ+
Sbjct: 126 LKTRE--GNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMTCALWDIETGQQCTAFT-G 182
Query: 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA 1882
H GDV+S+SLSPD + F++G+ D S KLWD R+ C QTF GHE+D+N+V F PSG AFA
Sbjct: 183 HTGDVMSLSLSPDFRTFISGACDASAKLWDIRDGMCKQTFPGHESDINAVAFFPSGNAFA 242
Query: 1883 TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942
TGS+D T RLFDIRADQ++A Y N G TS A S SGR +F G DD N +VWD ++
Sbjct: 243 TGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLFAGYDDFNCNVWDSMRQ 302
Query: 1943 THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
GVL+GH+NRV+ + ++ +GMA+ T SWD F+K+W
Sbjct: 303 ERAGVLAGHDNRVSCLGVTEDGMAVCTGSWDSFLKIW 339
|
|
| UNIPROTKB|P62871 GNB1 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 906 (324.0 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 163/337 (48%), Positives = 236/337 (70%)
Query: 1643 ELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG 1702
+L++E QL ++ ++ + AD L +T ++ ++++ +++L+GH+ K+ ++H+
Sbjct: 6 QLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT 65
Query: 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
DSR VS S DGKLIIWD++T NK IPLRS+WVM+ A+A SGN+VACGG+DN+C++Y+
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA 1822
L R+ G +V REL G+ G+LS CRF+DD ++T SGD W++ETGQ+
Sbjct: 126 LKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT-G 182
Query: 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA 1882
H GDV+S+SL+PD + FV+G+ D S KLWD RE C QTF GHE+D+N++CF P+G AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 1883 TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942
TGS+D T RLFD+RADQ++ TY N G TS + S SGR + G DD N +VWD LK
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 1943 THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
GVL+GH+NRV+ + ++ +GMA+ T SWD F+K+W
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
|
| UNIPROTKB|P62872 GNB1 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 906 (324.0 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 163/337 (48%), Positives = 236/337 (70%)
Query: 1643 ELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG 1702
+L++E QL ++ ++ + AD L +T ++ ++++ +++L+GH+ K+ ++H+
Sbjct: 6 QLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT 65
Query: 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
DSR VS S DGKLIIWD++T NK IPLRS+WVM+ A+A SGN+VACGG+DN+C++Y+
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA 1822
L R+ G +V REL G+ G+LS CRF+DD ++T SGD W++ETGQ+
Sbjct: 126 LKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT-G 182
Query: 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA 1882
H GDV+S+SL+PD + FV+G+ D S KLWD RE C QTF GHE+D+N++CF P+G AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 1883 TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942
TGS+D T RLFD+RADQ++ TY N G TS + S SGR + G DD N +VWD LK
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 1943 THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
GVL+GH+NRV+ + ++ +GMA+ T SWD F+K+W
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
|
| UNIPROTKB|P62873 GNB1 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 906 (324.0 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 163/337 (48%), Positives = 236/337 (70%)
Query: 1643 ELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG 1702
+L++E QL ++ ++ + AD L +T ++ ++++ +++L+GH+ K+ ++H+
Sbjct: 6 QLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT 65
Query: 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
DSR VS S DGKLIIWD++T NK IPLRS+WVM+ A+A SGN+VACGG+DN+C++Y+
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA 1822
L R+ G +V REL G+ G+LS CRF+DD ++T SGD W++ETGQ+
Sbjct: 126 LKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT-G 182
Query: 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA 1882
H GDV+S+SL+PD + FV+G+ D S KLWD RE C QTF GHE+D+N++CF P+G AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 1883 TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942
TGS+D T RLFD+RADQ++ TY N G TS + S SGR + G DD N +VWD LK
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 1943 THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
GVL+GH+NRV+ + ++ +GMA+ T SWD F+K+W
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
|
| MGI|MGI:95781 Gnb1 "guanine nucleotide binding protein (G protein), beta 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 906 (324.0 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 163/337 (48%), Positives = 236/337 (70%)
Query: 1643 ELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG 1702
+L++E QL ++ ++ + AD L +T ++ ++++ +++L+GH+ K+ ++H+
Sbjct: 6 QLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT 65
Query: 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
DSR VS S DGKLIIWD++T NK IPLRS+WVM+ A+A SGN+VACGG+DN+C++Y+
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA 1822
L R+ G +V REL G+ G+LS CRF+DD ++T SGD W++ETGQ+
Sbjct: 126 LKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT-G 182
Query: 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA 1882
H GDV+S+SL+PD + FV+G+ D S KLWD RE C QTF GHE+D+N++CF P+G AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 1883 TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942
TGS+D T RLFD+RADQ++ TY N G TS + S SGR + G DD N +VWD LK
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 1943 THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
GVL+GH+NRV+ + ++ +GMA+ T SWD F+K+W
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2004 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-82 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-38 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-35 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-33 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-33 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-28 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-21 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 9e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-06 | |
| COG5221 | 1618 | COG5221, DOP1, Dopey and related predicted leucine | 4e-05 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 2e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 7e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.001 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.002 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 272 bits (697), Expect = 2e-82
Identities = 100/298 (33%), Positives = 151/298 (50%), Gaps = 10/298 (3%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFA 1743
+++LKGH V V +S D + +GS DG + +WD TG + + + V VA +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-D 1802
G ++A G D ++DL + +R L G+ ++SS F D +L+ S D
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETG------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRD 114
Query: 1803 MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF 1862
I W++ETG+ + + H V S++ SPDG + + S D + KLWD R KCV T
Sbjct: 115 KTIKVWDVETGKCLT-TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL 173
Query: 1863 FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922
GH +VNSV F P G + S D T +L+D+ + + T +G S A S G
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL--RGHENGVNSVAFSPDG 231
Query: 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980
+ GS+D + VWDL LSGH N VTS++ SP+G L + S D +++W
Sbjct: 232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 1e-38
Identities = 97/313 (30%), Positives = 153/313 (48%), Gaps = 15/313 (4%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGS-LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
++L+GH V S+ +S D + SGS LDG + +WD TG + + V S+AF
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206
Query: 1743 AQSGNF-VACGGMDNMCTVYDLNNRDSTGAAKVIRELL-GYEGFLSSCRFIDDTTLLTGS 1800
+ G +A G D ++DL+ K++R L G+ + S D + L +GS
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLST------GKLLRSTLSGHSDSVVSSFSPDGSLLASGS 260
Query: 1801 GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQ 1860
D I W+L + + H V+S++ SPDG+ +GS D + +LWD K +
Sbjct: 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320
Query: 1861 --TFFGHEADVNSVCFHPSGLAFATG-SEDKTARLFDIRADQQIATYLPPNKNSGFTSCA 1917
T GHE V+S+ F P G +G S+D T RL+D+R + + +S S +
Sbjct: 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL---KTLEGHSNVLSVS 377
Query: 1918 VSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVK 1977
S GR + GS D V +WDL + L GH +RVTS+ SP+G +L + S D ++
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437
Query: 1978 VWQESNTIVWKVL 1990
+W ++
Sbjct: 438 LWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 142 bits (358), Expect = 2e-35
Identities = 82/335 (24%), Positives = 147/335 (43%), Gaps = 9/335 (2%)
Query: 1666 KLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN 1725
+++ + S + K+ + + + S+ S ++ D + + D
Sbjct: 1 LVDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDL---- 56
Query: 1726 KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL 1785
+ ++ + S+AF+ G + G D ++DL+N + +
Sbjct: 57 SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116
Query: 1786 SSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-V 1844
S + L + S D + W+L T ++ + H V S++ SPDG+ +GS +
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSL 176
Query: 1845 DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQQIAT 1903
D + KLWD R K + T GH V+S+ F P G L A+GS D T RL+D+ + + +
Sbjct: 177 DGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236
Query: 1904 YLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL-KTTHNGVLSGHENRVTSISLSP 1962
L + +S +S S G + GS D + +WDL ++ LSGH + V S++ SP
Sbjct: 237 TLSGHSDSVVSS--FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294
Query: 1963 NGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEK 1997
+G L + S D V++W + L + E
Sbjct: 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 1e-33
Identities = 93/302 (30%), Positives = 140/302 (46%), Gaps = 14/302 (4%)
Query: 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD-TWTGNKTQVIPLRSAWVMSVAFAQSGN 1747
++K+ G+S S SLDG + +WD + G + + S V S+AF+ G
Sbjct: 109 DSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK 168
Query: 1748 -FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMK 1804
+ +D ++DL K + L G+ +SS F D + +GS D
Sbjct: 169 LLASGSSLDGTIKLWDLRTG------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222
Query: 1805 IVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR-EKKCVQTFF 1863
I W+L TG+ + H VVS S SPDG +GS D + +LWD R ++T
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281
Query: 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR 1923
GH + V SV F P G A+GS D T RL+D+ + +++ +S + S G
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341
Query: 1924 YIFCG-SDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982
+ G SDD + +WDL L GH N V S+S SP+G + + S D V++W S
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLS 400
Query: 1983 NT 1984
Sbjct: 401 TG 402
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 1e-33
Identities = 104/363 (28%), Positives = 165/363 (45%), Gaps = 22/363 (6%)
Query: 1645 KKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDS 1704
K EL ++ +++ + + + + L+GH + + S+ +S D
Sbjct: 18 KSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDG 77
Query: 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVA----FAQSGN--FVACGGMDNMC 1758
+SGS DG + +WD + + L SV+ + GN +A +D
Sbjct: 78 ELLLSGSSDGTIKLWD-LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136
Query: 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLL--TGSGDMKIVTWNLETGQRI 1816
++DL+ K+IR L G+ ++S F D LL S D I W+L TG+ +
Sbjct: 137 KLWDLSTP-----GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191
Query: 1817 HEVAQAHIGDVVSISLSPDGQ-YFVTGSVDKSCKLWDFREKKCVQ-TFFGHEADVNSVCF 1874
H V S++ SPDG +GS D + +LWD K ++ T GH V S F
Sbjct: 192 S-TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SF 249
Query: 1875 HPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNV 1934
P G A+GS D T RL+D+R+ + L + +S S A S G+ + GS D V
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH-SSSVLSVAFSPDGKLLASGSSDGTV 308
Query: 1935 HVWDL--LKTTHNGVLSGHENRVTSISLSPNGMALVTS-SWDQFVKVWQESNTIVWKVLK 1991
+WDL K + L GHE V+S+S SP+G LV+ S D +++W K L+
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 1992 VYN 1994
++
Sbjct: 369 GHS 371
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 120 bits (301), Expect = 3e-28
Identities = 89/271 (32%), Positives = 136/271 (50%), Gaps = 14/271 (5%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGN-KTQVIPLRSAWVMSVA 1741
P +L GH + V+S+ +S D SGS DG + +WD TG + S V+S +
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-S 248
Query: 1742 FAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGS 1800
F+ G+ +A G D ++DL + ++ ++R L G+ + S F D L +GS
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRS-----SSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303
Query: 1801 GDMKIVTWNLETGQRIHEVA-QAHIGDVVSISLSPDGQYFVTG-SVDKSCKLWDFREKKC 1858
D + W+LETG+ + + + H G V S+S SPDG V+G S D + +LWD R K
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363
Query: 1859 VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAV 1918
++T GH +V SV F P G ++GS D T RL+D+ + S TS
Sbjct: 364 LKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL--DGHTSRVTSLDF 420
Query: 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS 1949
S G+ + GS DN + +WDL + + S
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLKTSLKSVSFS 451
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.0 bits (245), Expect = 3e-21
Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 10/234 (4%)
Query: 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDT-WTGNKTQVIPLRSAWVMSVAFA 1743
+ +L GH + V S +S D SGS DG + +WD + + + + S+ V+SVAF+
Sbjct: 235 RSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293
Query: 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLL--TGSG 1801
G +A G D ++DL L G+EG +SS F D +LL GS
Sbjct: 294 PDGKLLASGSSDGTVRLWDLETGKL----LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 1802 DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQT 1861
D I W+L TG+ + + +V+S+S SPDG+ +GS D + +LWD ++
Sbjct: 350 DGTIRLWDLRTGKPLKTLE--GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRN 407
Query: 1862 FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTS 1915
GH + V S+ F P G + A+GS D T RL+D++ + ++ P K S
Sbjct: 408 LDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKS 461
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 5e-09
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894
K ++T GH V SV F P G A+GS+D T R++D
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894
+ ++T GH V SV F P G A+GS+D T +L+D
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 9e-07
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD 1720
K+LKGH V SV +S D ++ SGS DG + +WD
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 1821 QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852
+ H G V S++ SPDG +GS D + ++WD
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-06
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD 1720
++LKGH V SV +S D SGS DG + +WD
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 1946 GVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
L GH VTS++ SP+G L + S D V+VW
Sbjct: 5 RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 1812 TGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852
+G+ + + + H G V S++ SPDG+Y +GS D + KLWD
Sbjct: 1 SGELLKTL-KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.2 bits (121), Expect = 4e-06
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 1668 EDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG-SLDGKLIIWDTWTGNK 1726
D T + D KL+ +LKGH V+S+ +S D VSG S DG + +WD K
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL-RTGK 362
Query: 1727 TQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786
+ V+SV+F+ G V+ G D ++DL+ ++R L G+ ++
Sbjct: 363 PLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST------GSLLRNLDGHTSRVT 416
Query: 1787 SCRF-IDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845
S F D +L +GS D I W+L+T + S+S SPDG+ + S D
Sbjct: 417 SLDFSPDGKSLASGSSDNTIRLWDLKT-------------SLKSVSFSPDGKVLASKSSD 463
Query: 1846 KS 1847
S
Sbjct: 464 LS 465
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1947 VLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
L GH VTS++ SP+G L + S D +K+W
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|227546 COG5221, DOP1, Dopey and related predicted leucine zipper transcription factors [Transcription] | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 4e-05
Identities = 28/151 (18%), Positives = 71/151 (47%), Gaps = 5/151 (3%)
Query: 1273 VTYGSQEKERVNTLLTTLMYNVI-PYLKNHSQRNAVSFHACSTLLASLSSYQYTRKAWKK 1331
+ +++ + +++ ++I P +K + + + + LLA LS K+W+K
Sbjct: 1285 IVLERLTEDKFQRTVLSIVNSLITPIIKLVNSSLGLKNYGLN-LLAVLSERGLEVKSWRK 1343
Query: 1332 DAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMTRVSLSQSNSLSLFSNKEQ 1391
+ +++ D LF L S++ ++ ++P+ DL+ R S ++ F +++
Sbjct: 1344 EFVEIFNDLDLFIYGSDQLHKKSSLMRKVVVEDPSILNDLIVR---LDSGLITFFVSQDS 1400
Query: 1392 EYEQRAQLLKKLAFVILCSETDQFHKHIPEI 1422
+ + LK+++++I S D F ++
Sbjct: 1401 DANNKTLNLKRISYLIFSSPYDYFLGFSLKL 1431
|
Length = 1618 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-04
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 17/165 (10%)
Query: 1688 LKGHINKVNSVHYS-GDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF-AQS 1745
+K H +V S+ YS D SGS DG + +W G I + A + V F ++S
Sbjct: 571 MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSES 629
Query: 1746 GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKI 1805
G +A G D+ YDL N + ++G+ +S RF+D +TL++ S D +
Sbjct: 630 GRSLAFGSADHKVYYYDLRNPKLP-----LCTMIGHSKTVSYVRFVDSSTLVSSSTDNTL 684
Query: 1806 VTWNLE-TGQRIHE------VAQAHIGDVVSISLSPDGQYFVTGS 1843
W+L + I+E + ++ + V +S+S DG Y TGS
Sbjct: 685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS-DG-YIATGS 727
|
Length = 793 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 7e-04
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938
TS A S G + GSDD V VWD
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938
TS A S G+Y+ GSDD + +WD
Sbjct: 12 TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 0.002
Identities = 60/262 (22%), Positives = 108/262 (41%), Gaps = 19/262 (7%)
Query: 1734 SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN--RDSTGAAKVIRELLGYEGFLSSC--R 1789
S V ++ F + G F A G++ +++ + +D + EL C
Sbjct: 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNS 542
Query: 1790 FIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL-SPDGQYFVTGSVDKSC 1848
+I + + + + + + W++ Q + E+ + H V SI S D +GS D S
Sbjct: 543 YI-KSQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSV 600
Query: 1849 KLWDFREKKCVQTFFGHEADVNSVCF-HPSGLAFATGSEDKTARLFDIRADQ-QIATYLP 1906
KLW + + T +A++ V F SG + A GS D +D+R + + T +
Sbjct: 601 KLWSINQGVSIGT-IKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659
Query: 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL------LKTTHNGVLSGHENRVTSISL 1960
+K + SS+ + S DN + +WDL + T GH N + L
Sbjct: 660 HSKTVSYVRFVDSST---LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL 716
Query: 1961 SPNGMALVTSSWDQFVKVWQES 1982
S + + T S V V+ ++
Sbjct: 717 SVSDGYIATGSETNEVFVYHKA 738
|
Length = 793 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.003
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 1724 GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
G + + + V SVAF+ GN +A G D V+D
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2004 | |||
| KOG3613|consensus | 1749 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0291|consensus | 893 | 99.98 | ||
| KOG0291|consensus | 893 | 99.98 | ||
| KOG0315|consensus | 311 | 99.97 | ||
| KOG0319|consensus | 775 | 99.97 | ||
| KOG0279|consensus | 315 | 99.97 | ||
| KOG0295|consensus | 406 | 99.97 | ||
| KOG0296|consensus | 399 | 99.97 | ||
| KOG0279|consensus | 315 | 99.97 | ||
| KOG0265|consensus | 338 | 99.97 | ||
| KOG0315|consensus | 311 | 99.97 | ||
| KOG0306|consensus | 888 | 99.97 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0285|consensus | 460 | 99.97 | ||
| KOG0318|consensus | 603 | 99.97 | ||
| KOG0284|consensus | 464 | 99.97 | ||
| KOG0286|consensus | 343 | 99.97 | ||
| KOG0293|consensus | 519 | 99.96 | ||
| KOG0645|consensus | 312 | 99.96 | ||
| KOG0263|consensus | 707 | 99.96 | ||
| KOG0266|consensus | 456 | 99.96 | ||
| KOG0284|consensus | 464 | 99.96 | ||
| KOG0273|consensus | 524 | 99.96 | ||
| KOG0282|consensus | 503 | 99.96 | ||
| KOG0263|consensus | 707 | 99.96 | ||
| KOG0266|consensus | 456 | 99.96 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0285|consensus | 460 | 99.96 | ||
| KOG0306|consensus | 888 | 99.96 | ||
| KOG0295|consensus | 406 | 99.95 | ||
| COG5221 | 1618 | DOP1 Dopey and related predicted leucine zipper tr | 99.95 | |
| KOG0276|consensus | 794 | 99.95 | ||
| KOG0276|consensus | 794 | 99.95 | ||
| KOG0316|consensus | 307 | 99.95 | ||
| KOG0265|consensus | 338 | 99.95 | ||
| KOG0645|consensus | 312 | 99.95 | ||
| KOG0281|consensus | 499 | 99.95 | ||
| KOG0293|consensus | 519 | 99.95 | ||
| KOG0296|consensus | 399 | 99.95 | ||
| KOG0292|consensus | 1202 | 99.94 | ||
| KOG0292|consensus | 1202 | 99.94 | ||
| KOG0281|consensus | 499 | 99.94 | ||
| KOG0282|consensus | 503 | 99.94 | ||
| KOG0275|consensus | 508 | 99.94 | ||
| KOG0283|consensus | 712 | 99.94 | ||
| KOG0278|consensus | 334 | 99.94 | ||
| KOG3613|consensus | 1749 | 99.94 | ||
| KOG0316|consensus | 307 | 99.93 | ||
| KOG0643|consensus | 327 | 99.93 | ||
| KOG0288|consensus | 459 | 99.93 | ||
| KOG0313|consensus | 423 | 99.93 | ||
| KOG1407|consensus | 313 | 99.93 | ||
| KOG0313|consensus | 423 | 99.92 | ||
| KOG0305|consensus | 484 | 99.92 | ||
| KOG1063|consensus | 764 | 99.92 | ||
| KOG0283|consensus | 712 | 99.92 | ||
| KOG0640|consensus | 430 | 99.92 | ||
| KOG0289|consensus | 506 | 99.92 | ||
| KOG1407|consensus | 313 | 99.92 | ||
| KOG0268|consensus | 433 | 99.91 | ||
| KOG0772|consensus | 641 | 99.91 | ||
| KOG1446|consensus | 311 | 99.91 | ||
| KOG0274|consensus | 537 | 99.91 | ||
| KOG0278|consensus | 334 | 99.91 | ||
| KOG0274|consensus | 537 | 99.91 | ||
| KOG1408|consensus | 1080 | 99.91 | ||
| KOG0640|consensus | 430 | 99.91 | ||
| KOG0973|consensus | 942 | 99.91 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.91 | |
| KOG0310|consensus | 487 | 99.91 | ||
| KOG1408|consensus | 1080 | 99.91 | ||
| KOG0300|consensus | 481 | 99.9 | ||
| KOG0288|consensus | 459 | 99.9 | ||
| KOG0308|consensus | 735 | 99.9 | ||
| KOG0772|consensus | 641 | 99.9 | ||
| KOG0643|consensus | 327 | 99.9 | ||
| KOG1539|consensus | 910 | 99.9 | ||
| KOG0275|consensus | 508 | 99.9 | ||
| KOG0277|consensus | 311 | 99.9 | ||
| KOG0973|consensus | 942 | 99.9 | ||
| KOG2106|consensus | 626 | 99.89 | ||
| KOG0299|consensus | 479 | 99.89 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.89 | |
| KOG0641|consensus | 350 | 99.89 | ||
| KOG0301|consensus | 745 | 99.89 | ||
| KOG0299|consensus | 479 | 99.89 | ||
| KOG0308|consensus | 735 | 99.88 | ||
| KOG1446|consensus | 311 | 99.88 | ||
| KOG0641|consensus | 350 | 99.88 | ||
| KOG0294|consensus | 362 | 99.88 | ||
| KOG0650|consensus | 733 | 99.88 | ||
| KOG2096|consensus | 420 | 99.88 | ||
| KOG0310|consensus | 487 | 99.87 | ||
| KOG1539|consensus | 910 | 99.87 | ||
| KOG0268|consensus | 433 | 99.87 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.87 | |
| KOG0301|consensus | 745 | 99.87 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.87 | |
| KOG0647|consensus | 347 | 99.87 | ||
| KOG0647|consensus | 347 | 99.86 | ||
| KOG0264|consensus | 422 | 99.86 | ||
| KOG1274|consensus | 933 | 99.85 | ||
| KOG0277|consensus | 311 | 99.85 | ||
| KOG0305|consensus | 484 | 99.85 | ||
| KOG0650|consensus | 733 | 99.85 | ||
| KOG0264|consensus | 422 | 99.85 | ||
| KOG1036|consensus | 323 | 99.85 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.85 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.85 | |
| KOG0289|consensus | 506 | 99.84 | ||
| KOG1063|consensus | 764 | 99.84 | ||
| KOG2055|consensus | 514 | 99.84 | ||
| KOG0639|consensus | 705 | 99.84 | ||
| KOG0646|consensus | 476 | 99.84 | ||
| KOG1273|consensus | 405 | 99.84 | ||
| KOG0294|consensus | 362 | 99.83 | ||
| KOG2106|consensus | 626 | 99.83 | ||
| KOG4283|consensus | 397 | 99.83 | ||
| KOG2048|consensus | 691 | 99.83 | ||
| KOG1274|consensus | 933 | 99.83 | ||
| KOG2055|consensus | 514 | 99.82 | ||
| KOG1332|consensus | 299 | 99.82 | ||
| KOG0646|consensus | 476 | 99.82 | ||
| KOG1036|consensus | 323 | 99.82 | ||
| KOG2096|consensus | 420 | 99.81 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.81 | |
| KOG2048|consensus | 691 | 99.81 | ||
| KOG0300|consensus | 481 | 99.81 | ||
| KOG2445|consensus | 361 | 99.8 | ||
| KOG0269|consensus | 839 | 99.8 | ||
| KOG0639|consensus | 705 | 99.79 | ||
| KOG4328|consensus | 498 | 99.79 | ||
| KOG2445|consensus | 361 | 99.78 | ||
| KOG1332|consensus | 299 | 99.78 | ||
| KOG1445|consensus | 1012 | 99.77 | ||
| KOG0267|consensus | 825 | 99.77 | ||
| KOG1273|consensus | 405 | 99.77 | ||
| KOG0321|consensus | 720 | 99.77 | ||
| KOG0269|consensus | 839 | 99.76 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.76 | |
| KOG0267|consensus | 825 | 99.75 | ||
| KOG4283|consensus | 397 | 99.75 | ||
| KOG0321|consensus | 720 | 99.74 | ||
| KOG4378|consensus | 673 | 99.74 | ||
| KOG4378|consensus | 673 | 99.73 | ||
| KOG1538|consensus | 1081 | 99.73 | ||
| KOG0307|consensus | 1049 | 99.72 | ||
| KOG0302|consensus | 440 | 99.72 | ||
| KOG0322|consensus | 323 | 99.72 | ||
| KOG2919|consensus | 406 | 99.71 | ||
| KOG1240|consensus | 1431 | 99.7 | ||
| KOG0270|consensus | 463 | 99.7 | ||
| KOG4328|consensus | 498 | 99.69 | ||
| KOG1517|consensus | 1387 | 99.69 | ||
| KOG1188|consensus | 376 | 99.69 | ||
| KOG1009|consensus | 434 | 99.68 | ||
| KOG0302|consensus | 440 | 99.68 | ||
| KOG1034|consensus | 385 | 99.68 | ||
| KOG0307|consensus | 1049 | 99.66 | ||
| KOG0270|consensus | 463 | 99.66 | ||
| KOG1963|consensus | 792 | 99.66 | ||
| KOG4227|consensus | 609 | 99.66 | ||
| KOG0642|consensus | 577 | 99.65 | ||
| KOG1587|consensus | 555 | 99.65 | ||
| KOG1963|consensus | 792 | 99.63 | ||
| KOG2919|consensus | 406 | 99.63 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.63 | |
| KOG1538|consensus | 1081 | 99.62 | ||
| KOG0644|consensus | 1113 | 99.6 | ||
| KOG1034|consensus | 385 | 99.6 | ||
| KOG2110|consensus | 391 | 99.59 | ||
| KOG1334|consensus | 559 | 99.58 | ||
| KOG1007|consensus | 370 | 99.58 | ||
| KOG0644|consensus | 1113 | 99.58 | ||
| KOG0303|consensus | 472 | 99.58 | ||
| KOG0649|consensus | 325 | 99.58 | ||
| KOG1587|consensus | 555 | 99.57 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.55 | |
| KOG0642|consensus | 577 | 99.55 | ||
| KOG1009|consensus | 434 | 99.54 | ||
| KOG0649|consensus | 325 | 99.53 | ||
| KOG4227|consensus | 609 | 99.5 | ||
| KOG1517|consensus | 1387 | 99.49 | ||
| KOG0322|consensus | 323 | 99.48 | ||
| KOG1523|consensus | 361 | 99.46 | ||
| KOG1524|consensus | 737 | 99.45 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.44 | |
| KOG1524|consensus | 737 | 99.44 | ||
| KOG2394|consensus | 636 | 99.43 | ||
| KOG0290|consensus | 364 | 99.43 | ||
| KOG2110|consensus | 391 | 99.43 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG4497|consensus | 447 | 99.42 | ||
| KOG0290|consensus | 364 | 99.41 | ||
| KOG0771|consensus | 398 | 99.41 | ||
| KOG1007|consensus | 370 | 99.41 | ||
| KOG1445|consensus | 1012 | 99.4 | ||
| KOG0303|consensus | 472 | 99.4 | ||
| KOG1240|consensus | 1431 | 99.4 | ||
| KOG0771|consensus | 398 | 99.39 | ||
| KOG1310|consensus | 758 | 99.37 | ||
| KOG2321|consensus | 703 | 99.36 | ||
| KOG1334|consensus | 559 | 99.35 | ||
| KOG2111|consensus | 346 | 99.34 | ||
| KOG3881|consensus | 412 | 99.33 | ||
| KOG2111|consensus | 346 | 99.32 | ||
| KOG2139|consensus | 445 | 99.32 | ||
| KOG1523|consensus | 361 | 99.3 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.29 | |
| KOG1272|consensus | 545 | 99.29 | ||
| KOG1272|consensus | 545 | 99.28 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG1188|consensus | 376 | 99.26 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.25 | |
| KOG2321|consensus | 703 | 99.24 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.23 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.23 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.22 | |
| KOG1409|consensus | 404 | 99.21 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.21 | |
| KOG2315|consensus | 566 | 99.2 | ||
| KOG3881|consensus | 412 | 99.17 | ||
| KOG1310|consensus | 758 | 99.16 | ||
| KOG4497|consensus | 447 | 99.16 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.16 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.15 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.14 | |
| KOG1354|consensus | 433 | 99.13 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.13 | |
| KOG2394|consensus | 636 | 99.1 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.09 | |
| KOG2041|consensus | 1189 | 99.09 | ||
| KOG2314|consensus | 698 | 99.08 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.07 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.07 | |
| KOG2139|consensus | 445 | 99.05 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.04 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.03 | |
| KOG0974|consensus | 967 | 99.01 | ||
| KOG2315|consensus | 566 | 99.01 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.01 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.99 | |
| KOG1064|consensus | 2439 | 98.99 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.99 | |
| KOG1354|consensus | 433 | 98.99 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.97 | |
| KOG2041|consensus | 1189 | 98.96 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.95 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.92 | |
| KOG4190|consensus | 1034 | 98.91 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.9 | |
| KOG4547|consensus | 541 | 98.88 | ||
| KOG0280|consensus | 339 | 98.88 | ||
| KOG0309|consensus | 1081 | 98.85 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.82 | |
| KOG1409|consensus | 404 | 98.81 | ||
| KOG4547|consensus | 541 | 98.81 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.8 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.77 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.77 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.77 | |
| KOG0974|consensus | 967 | 98.75 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.75 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.73 | |
| KOG1064|consensus | 2439 | 98.72 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.72 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.71 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.69 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.68 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.68 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.68 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.66 | |
| KOG4532|consensus | 344 | 98.66 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.62 | |
| KOG1912|consensus | 1062 | 98.59 | ||
| KOG0309|consensus | 1081 | 98.59 | ||
| KOG0280|consensus | 339 | 98.57 | ||
| KOG1832|consensus | 1516 | 98.53 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.53 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.51 | |
| KOG2314|consensus | 698 | 98.44 | ||
| KOG4190|consensus | 1034 | 98.44 | ||
| KOG0882|consensus | 558 | 98.44 | ||
| KOG1912|consensus | 1062 | 98.42 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.42 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.42 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.42 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.4 | |
| KOG3914|consensus | 390 | 98.4 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.37 | |
| KOG4714|consensus | 319 | 98.36 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.34 | |
| KOG4532|consensus | 344 | 98.34 | ||
| KOG3914|consensus | 390 | 98.28 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.24 | |
| KOG4714|consensus | 319 | 98.2 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.2 | |
| KOG1920|consensus | 1265 | 98.14 | ||
| KOG1275|consensus | 1118 | 98.14 | ||
| KOG2114|consensus | 933 | 98.12 | ||
| KOG2695|consensus | 425 | 98.12 | ||
| KOG4649|consensus | 354 | 98.05 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.03 | |
| KOG0882|consensus | 558 | 98.03 | ||
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.97 | |
| KOG2695|consensus | 425 | 97.96 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.95 | |
| KOG2066|consensus | 846 | 97.91 | ||
| KOG1832|consensus | 1516 | 97.87 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.85 | |
| KOG1645|consensus | 463 | 97.83 | ||
| KOG1920|consensus | 1265 | 97.83 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.83 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.8 | |
| KOG2066|consensus | 846 | 97.74 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.74 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.73 | |
| KOG3617|consensus | 1416 | 97.73 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.72 | |
| KOG1645|consensus | 463 | 97.71 | ||
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.68 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.68 | |
| KOG3621|consensus | 726 | 97.61 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.57 | |
| KOG2114|consensus | 933 | 97.54 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.53 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.51 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.44 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.41 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.4 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.38 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.37 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.36 | |
| KOG1275|consensus | 1118 | 97.35 | ||
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.29 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.29 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.23 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.17 | |
| KOG4649|consensus | 354 | 97.11 | ||
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.11 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.09 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.08 | |
| KOG3617|consensus | 1416 | 97.08 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.06 | |
| KOG1008|consensus | 783 | 97.04 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.97 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.96 | |
| KOG1008|consensus | 783 | 96.96 | ||
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.93 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.89 | |
| KOG3621|consensus | 726 | 96.78 | ||
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.73 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.65 | |
| KOG1897|consensus | 1096 | 96.63 | ||
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.6 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.37 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.35 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.3 | |
| KOG4441|consensus | 571 | 96.28 | ||
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.23 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.17 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.15 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.13 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.08 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.05 | |
| KOG1897|consensus | 1096 | 96.04 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.98 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 95.97 | |
| KOG4640|consensus | 665 | 95.9 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.85 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.84 | |
| KOG2444|consensus | 238 | 95.78 | ||
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.72 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.65 | |
| KOG4441|consensus | 571 | 95.62 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 95.56 | |
| KOG2395|consensus | 644 | 95.53 | ||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.4 | |
| KOG2395|consensus | 644 | 95.37 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.34 | |
| KOG4640|consensus | 665 | 95.3 | ||
| PRK10115 | 686 | protease 2; Provisional | 95.23 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.88 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 94.87 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.87 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.85 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.83 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.77 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 94.37 | |
| KOG2079|consensus | 1206 | 94.31 | ||
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.12 | |
| KOG2079|consensus | 1206 | 94.05 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.98 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.93 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.89 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.88 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.81 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 93.7 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.63 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.44 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 93.42 | |
| KOG2444|consensus | 238 | 93.35 | ||
| PHA03098 | 534 | kelch-like protein; Provisional | 93.33 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 93.2 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 93.1 | |
| KOG4499|consensus | 310 | 92.37 | ||
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.14 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.79 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 91.17 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 90.75 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 90.67 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.6 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 90.42 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 90.27 | |
| KOG2280|consensus | 829 | 90.13 | ||
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 90.07 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 90.05 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 89.59 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 89.3 | |
| PLN02153 | 341 | epithiospecifier protein | 88.29 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 88.11 | |
| PLN02153 | 341 | epithiospecifier protein | 88.06 | |
| KOG2280|consensus | 829 | 88.04 | ||
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 87.92 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.89 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 87.82 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 87.49 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 87.4 | |
| KOG3630|consensus | 1405 | 87.32 | ||
| KOG4499|consensus | 310 | 87.31 | ||
| PLN02193 | 470 | nitrile-specifier protein | 87.1 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 86.73 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 86.69 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 86.46 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 85.7 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 85.7 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 85.65 | |
| KOG1916|consensus | 1283 | 85.61 | ||
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 85.57 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 85.26 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 85.0 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 84.61 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 84.34 | |
| KOG1900|consensus | 1311 | 84.34 | ||
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 83.91 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 83.24 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 82.85 | |
| KOG1916|consensus | 1283 | 82.59 | ||
| PRK10115 | 686 | protease 2; Provisional | 82.36 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 81.99 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 81.93 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 81.83 | |
| KOG3630|consensus | 1405 | 81.74 | ||
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 81.56 |
| >KOG3613|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-127 Score=1242.53 Aligned_cols=832 Identities=34% Similarity=0.482 Sum_probs=701.6
Q ss_pred eccccCcccccccceEEEEeeeechhhHHHHHHHHHHhhccChHHHHHHHhhcCCCCchHHHHHHHHHHhhhcCCccccc
Q psy8748 590 ATSSAGNSVESTHAHVLLYCGVYDSARTQYTLQTIRNMILPNSRAFLCAAATTALAPRSPILKLLARHRKCLFGRGFHGD 669 (2004)
Q Consensus 590 ~~~~~~~~~~~l~~H~LlY~~~yd~~r~l~a~~~l~~il~~~~~~f~~~~~tt~~~s~~~~~~Ll~rH~~~~~G~~F~g~ 669 (2004)
.+.+++. ++++.+|+++|.+.||+.|+||||.++++|++ |||.|+|++.+||+++.. |+||+.|||+++.||.|||+
T Consensus 700 ~q~~~l~-v~~l~~h~~~~l~~~~~~~~LyaF~~~r~il~-n~~l~~~l~~~ts~d~~s-l~~Ll~rh~~si~Gq~f~~~ 776 (1749)
T KOG3613|consen 700 MQKSLLM-VKELYTHVLYYLQKYDASRTLYAFVVLRGILC-NPRLFVLLVSETSRDSDS-LNNLLNRHRESILGQLFDSG 776 (1749)
T ss_pred hhhhHHH-HHHHhhhHHHHhhhhhhhhhHHHHHhhHhhhh-chHHHHHHhhhcccCcHH-HHHHHHHHHHhhccchhhcc
Confidence 3445555 99999999999999999999999999999999 999999999999997666 89999999999999999999
Q ss_pred cCCCCCCCCCCchHHHHHHHHHHHHHHhhccccCCCCCCHHHHhhchhhhhhhHHHHHHHHHHHHHHHHhcCCcchHHHH
Q psy8748 670 IESTGCTYSRSSMYLEVLISVCLYYIRSYYLNLGQTRLTLEEIAGNRQVQIASVELLSVILSELAGIVRDSGKGIDTYTT 749 (2004)
Q Consensus 670 ~~~~~~~~~~~~~~lEll~~~cL~f~rsyy~~~~~~~~s~~d~~~N~~vq~~s~E~l~~i~~eL~~~~~~~~~~~~~~i~ 749 (2004)
+. +.++.++++|+||+|+++||+|+|+||++. ++++|++|+.+||++|++++|+|+++|.||+.|++.++++|++||.
T Consensus 777 ~~-~~~~~~~~s~~LelLnsl~l~~lr~~~~~~-~l~~t~~dl~~~r~~q~~sIe~l~~l~~el~~v~k~~~~~~~~~i~ 854 (1749)
T KOG3613|consen 777 LP-STENLNKLSMILELLNSLCLSFLRSYYNMI-FLKVTAQDLLGNRKGQVESIEYLTLLFLELAYVLKSSNGKFVEFIS 854 (1749)
T ss_pred Cc-cchhccccchhhhHHHHHHHHHHHHhcccc-cccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHH
Confidence 98 778999999999999999999999999942 8899999999999999999999999999999999999888999999
Q ss_pred HHhhhcchhhhhhh--ccccccccccccccCCCcccccccccCCCCCCCccchhhhcccCCCCCCCCcchhhHHHHHHHH
Q psy8748 750 YSKNLSLLQNISVF--VNPFSTDNSTSMMNNDFDDYFVEEKKDGTSTTSTELIDEDVKNNNSGGSGVSSQCLTLQIQLLK 827 (2004)
Q Consensus 750 ~ll~rckvQk~~l~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~LL~ 827 (2004)
++|.|||+||+++| ++|+++. ++ +++.+...++ ....+.++.+|-++....+ .+.+|.+||+
T Consensus 855 ~ll~r~K~qk~~l~~llss~~s~------~~-~~~~~~n~k~-------~~~~~~~~S~~l~~d~ql~--~~~~q~~Ll~ 918 (1749)
T KOG3613|consen 855 TLLCRIKLQKVILHSLLSSLCSL------QK-TLGLKDNIKS-------GTLAELILSINLGLDIQLN--EDSLQAELLF 918 (1749)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHh------HH-HhccccccCC-------CccHHHHHhhchhhhhhhc--hhHHHHHHHH
Confidence 99999999999999 8888765 43 5665555553 3344555555544443322 3679999999
Q ss_pred HHHHHHhhcccccccCCCCCCCCCCCCC---C---CCCCCCCCCCCCCCCCCchhHHHHHHHhhccCCCCcchhhhHHHH
Q psy8748 828 LLLSALILEHEVNTKRGEVEPSPPSLSS---V---DLTGNDPKYYPGRIIPQQPMFLCALARALESNPGLRASHQHWTTM 901 (2004)
Q Consensus 828 ll~~~i~le~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~i~~~~~fl~~ll~gL~~~~~~~~~~~~W~~~ 901 (2004)
+++.+|+|||+++..+++.+.+.-.... + ...++..+|.+++++.+|+||+.++++||+++ +++|++|+.+
T Consensus 919 llq~~i~le~~v~~~~e~~~~~~~s~~~~~~~~~~~~~~~ld~~~~~~~~~~~~lfl~~vv~~L~~~---~~~h~~w~~l 995 (1749)
T KOG3613|consen 919 LLQIAIVLEHEVGRLPESRSNSFDSFVSDSLEMLHSGAIRLDQYDDPASILYQGLFLLAVVRALKDG---PGLHPMWLIL 995 (1749)
T ss_pred HHHHHHHHHHHhccccccccccHHHHHHHHHHhchhcCcchhhccCchHHHHHHHHHHHHHHhcccC---CCCCHHHHHH
Confidence 9999999999994433333211111111 1 15578889999999999999999999999888 4699999999
Q ss_pred hhhccccccchhhhHHHHHHHHHHHHHHHHHHHhccccccc----cCCCCChHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q psy8748 902 LTCALPYLGKSLTTVVKVAIKALCANVDYLAEVYSVQNENK----LKTNIPADYAITQMEALTILCHYCLLDSAQPFNQP 977 (2004)
Q Consensus 902 l~~~LP~~~~sl~~~v~~~v~qlC~~i~~l~~~~~~~~~~~----~~~~~p~~~~itlLegl~~i~H~~Ll~~~~~~~~~ 977 (2004)
|+++|||+|++|+++|+++|+|||||++.+.++|+. ++.+ .+..+|+||++++|||||+|+||||||+++++.+.
T Consensus 996 It~sLp~~~~sL~~~vv~~v~qLcknvd~l~~~~~~-~~~~~~~~~~~~~p~d~~l~~Le~Lt~i~h~cLld~t~q~~~~ 1074 (1749)
T KOG3613|consen 996 ITESLPYFGKSLQRIVVPVVVQLCKNVDRLKKQYES-EYGKSPDDPADYIPPDYLLTLLEGLTEIVHFCLLDDTQQFIHL 1074 (1749)
T ss_pred HHHHHHHHHhhhheeehhhHHHHHHHHHHHHHHHhh-ccCCCCCchhhhCChHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999999999999999999864 4442 55669999999999999999999999999998665
Q ss_pred CCCccccccccccccccccccccCCCCCCccccceeeeecCCC-----CCcccccchhhhhhchhhhHHHHhhhHhHHhh
Q psy8748 978 LHGNVMYHVSEKYNKSLKDISSKANNVGKSGKKIVAVTSLSSG-----DNQCVTEKKRVNQNIYHDGIDTYTTYSKNLSL 1052 (2004)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~n~v~~~~~s~~-----~~~~~~~~~~vaR~~L~~i~~~~~~w~~~i~~ 1052 (2004)
+.+.....++.+ ...--+.|+|.|+++|++.+ .++...+.+..|+.++ ++++ |.+-..+
T Consensus 1075 ~~~~~p~~~~~a-----------~s~~~g~l~~sis~~~~s~s~~~~~ds~~r~~~l~~aq~a~----~ti~-~~~~~~~ 1138 (1749)
T KOG3613|consen 1075 NATPDPSSLSKA-----------RSELFGELINSISSVFLSWSSSNKLDSSEREDGLLIAQSAL----QTIL-LGTRSSY 1138 (1749)
T ss_pred ccCCCcchhhhh-----------hHHHHHHHHHHHHHHHHhhhhccccccccCcchhHHHHHHh----HHHH-HhcchHH
Confidence 521111111111 11134566677777666654 2333333444455444 2111 5555557
Q ss_pred hhhhhcccCccccccchhhhhccccccccccccCCCC----------ccc----------cccccCCcchHHHHHHHHHc
Q psy8748 1053 LQNISVFVNPFSTDNSTSMMNNDFDDYFVEEKKDGTS----------TTS----------TELIAMPIDTLVQTIHQVIR 1112 (2004)
Q Consensus 1053 ~~~il~~l~p~~~~~~~~~l~al~~~~~W~~~~~~~~----------~~s----------~~i~~l~~dti~~~~~~v~~ 1112 (2004)
||+++++++|++++|+..|++|+ |+||..||-..+ +++ +++.+||+|+.+.+++.+++
T Consensus 1139 r~~~l~~lsp~s~~l~~~flaa~--a~~w~~r~~~~~~~~l~i~~~~e~~~~ql~l~tlvss~~V~~~~~~~~tv~~~lk 1216 (1749)
T KOG3613|consen 1139 RQKLLEFLSPDSSHLGEAFLAAY--AFVWEERRLAETTTLLKIIELLEASNEQLDLVTLVSSLSVQPEEKLLSTVKHVLK 1216 (1749)
T ss_pred HHHhHHHhCchHHHHHHHHHHHH--HHHHHhccccccchhhhhhhHhhhhHHHHHHHHHHHhhcccccccceeeeHHHHh
Confidence 99999999999999999999999 999997663322 233 99999999999999999999
Q ss_pred CCCCCCC-C--CcccHHHHHHHHHHHHhhCCcchHHhHHHHHHHHHHhh--cCCCCchhHHHHHHHHHHhhcCCCCC-cc
Q psy8748 1113 STTINME-P--SMRMEVSVLELLLHYIQLTPSTALAESWPSLLLLLREG--PSLSPPSQFILMAILSQFVHRTSAPL-PD 1186 (2004)
Q Consensus 1113 ~~~~~~~-~--~~~~e~~Ll~FL~~Y~~sL~~~~l~eiW~~ll~flKdv--lsn~~p~~l~~l~IL~ekv~~t~f~~-Ed 1186 (2004)
.++++.+ + ...+|.++++|+++|+++++..++.++|.+++.|+||. +++++|++|.++.+|+++|.+++- . ||
T Consensus 1217 ~~~~i~~~~~~~~~~ei~~Le~~~~~~~~vp~~~l~~~~sSLl~~l~e~i~~sl~~~~~flll~~Lndfv~~~~~-~~e~ 1295 (1749)
T KOG3613|consen 1217 LPPAIERSDLAFFSTEIPFLELFYAFVSRVPVPNLRDSWSSLLALLRESIQLSLSAPAVFLLLSTLNDFVSKNPN-MYED 1295 (1749)
T ss_pred cCcccCccchhhcCccchHHHHHHHHhccCcchHHHHHHHHHHHHHHHhHhhccCchHHHHHHHHHHHHHhhCcC-cchh
Confidence 9999988 4 99999999999999999999999999999999999999 999999999999999999999994 5 99
Q ss_pred hhhhhhHHHHHHHHHHHHHhccccccccchhhhcccccccccccCCCCCCCcccccccccccc---cccccchhhHHHHH
Q psy8748 1187 RRDQKDLQDITAKLIESCAGIAGACLEQTTWLRRNLAVKEDELSNSSSDKDSDKCKFKHITVG---TTVAQHSVQALSVL 1263 (2004)
Q Consensus 1187 Kk~rKELqD~~~KlL~a~~~~~~~~leq~~w~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~al~~L 1263 (2004)
||++|||||++.|+++++..++|+++||++|++|+++++.+.+..- .++..+....++. -.+++|+++|+.++
T Consensus 1296 kk~qrdlqdVt~kil~av~aiaG~sle~ttwl~r~l~vKa~v~dt~----~~~l~d~~~~s~~~~~k~~d~yS~qal~~l 1371 (1749)
T KOG3613|consen 1296 KKDQRDLQDVTSKILEAVGAIAGSSLEQTTWLDRNLEVKALVSDTF----FEDLPDAKSNSVYLLQKKLDVYSVQALFLL 1371 (1749)
T ss_pred hhhhhhHHHHHHHHHHHHHhhcccccchhhhhhcchhhhhhhcchh----hhhhhhhhhhhhHHhhcCCccchHHHHHHH
Confidence 9999999999999999999999999999999999998886422110 0011111111221 14569999999999
Q ss_pred HHHHhhhhcccccCCCchhHHHHHHhHhhhhhcccccccccccchhhHHHHHHHHhhhcCccccchHHHHHHhcCCCccc
Q psy8748 1264 AQLLAPLLDVTYGSQEKERVNTLLTTLMYNVIPYLKNHSQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALF 1343 (2004)
Q Consensus 1264 ~~l~~~l~~l~~~~~E~DRv~~~ls~I~~nviP~lK~k~~~n~~~~~~~~~LL~sLS~~~~~~KaWKk~V~DlFnD~~FF 1343 (2004)
++.++-+.|+.|.++|+||+.++++.|++||+||+|+|+++|+|.+.++++||.+||+|+|++|+|||+++|+|+|++||
T Consensus 1372 ae~l~~lld~~~~sDEk~kv~~lls~v~~~ItPylk~~sa~nap~~~a~~~LLasLSgy~y~rkaWrKe~~eLF~D~~fF 1451 (1749)
T KOG3613|consen 1372 AERLADLLDVVYRSDEKDKVVPLLSIVNYNITPYLKNHSARNAPLFRAGLQLLASLSGYQYTRKAWRKEFLELFLDNSFF 1451 (1749)
T ss_pred HHHHHHHHHHHhccchhhhhhhHHHHHHHhhhHHhccccccccchHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhchhhHHHHHHHHHhcCCCcHHHHHhhcccCCCcccccccChHHHHHHHHHHHHHHHhhhhccCCchhhccChhHH
Q psy8748 1344 QMELRCLRAWKSIVDNLMSQEPATFRDLMTRVSLSQSNSLSLFSNKEQEYEQRAQLLKKLAFVILCSETDQFHKHIPEIT 1423 (2004)
Q Consensus 1344 ~~~~~~l~~W~~II~~w~~~DK~~f~DLL~Rit~~~Sss~~iFtn~e~E~e~Ra~~LKRLAfLIlsse~D~yl~~Lp~I~ 1423 (2004)
+|+.+|+++|++||++||+|||++|+|||.||+.++|++.++|+|+|+|+|+|||+||||||+||+||.|||+.|||+||
T Consensus 1452 qmd~s~l~~W~~Iid~lmt~d~t~f~DLm~ri~~s~s~s~~lftSrd~e~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iq 1531 (1749)
T KOG3613|consen 1452 QMDLSCLRHWSSIIDHLMTHDKTIFNDLMTRISSSQSGSLNLFTSRDQELEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQ 1531 (1749)
T ss_pred eeeHHHHHHHHHHHHHHHhCCchHHHHHHHHhhcccccceeeeecchHHHHHHHHHHHhhHhheeeCcHHhhhhhchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-hcCcccccchhhhHHHHHHhhccccccccCCCCCCCCCCceeehhhcc
Q psy8748 1424 GLTEGALI-ESCAGIAGACLEQTTWLRRNLAVKEDELSNSSSDKDSDKSFFFFFFFF 1479 (2004)
Q Consensus 1424 ekl~e~L~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1479 (2004)
|+|.++|+ ...+.|+++ +++|.|||.||= |.+|-.+=--.+.++++
T Consensus 1532 Erl~~~Lrv~~~~~lk~~----vFL~~RVLLLR~------Sp~hL~~LWPImv~ELv 1578 (1749)
T KOG3613|consen 1532 ERLADLLRVSQSPKLKKA----VFLFFRVLLLRI------SPDHLTSLWPIMVYELV 1578 (1749)
T ss_pred HHHHHhcccCCCchHHHH----HHHHHHHHHHhc------CHhhcccchHHHHHHHH
Confidence 99999999 445555554 469999999984 44444444445555443
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=392.42 Aligned_cols=327 Identities=27% Similarity=0.448 Sum_probs=298.6
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1550 APEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1550 a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
+-.+|.+.|-|++|+|+|.+||| |+.|.|+|+||..+ .
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~t-GsGD~TvR~WD~~T--------------------e--------------------- 147 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVT-GSGDTTVRLWDLDT--------------------E--------------------- 147 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEe-cCCCceEEeeccCC--------------------C---------------------
Confidence 34569999999999999999999 99999999999988 1
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVS 1709 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LAS 1709 (2004)
.|.++.+||...|.|++|+|||+.||+
T Consensus 148 -----------------------------------------------------Tp~~t~KgH~~WVlcvawsPDgk~iAS 174 (480)
T KOG0271|consen 148 -----------------------------------------------------TPLFTCKGHKNWVLCVAWSPDGKKIAS 174 (480)
T ss_pred -----------------------------------------------------CcceeecCCccEEEEEEECCCcchhhc
Confidence 135677899999999999999999999
Q ss_pred EeCCCeEEEEECCCCceE-EEeeCCCCceEEEEEec-----CCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcc
Q psy8748 1710 GSLDGKLIIWDTWTGNKT-QVIPLRSAWVMSVAFAQ-----SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG 1783 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l-~ti~~Ht~~ItsLafSP-----dg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~ 1783 (2004)
|+.||.|++||.++|+.+ ..+.+|..+|++++|.| ..+++++++.||.|+|||+.. ......+.+|..
T Consensus 175 G~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~------~~~~~~lsgHT~ 248 (480)
T KOG0271|consen 175 GSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL------GTCVRTLSGHTA 248 (480)
T ss_pred cccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC------ceEEEEeccCcc
Confidence 999999999999998765 56899999999999976 467999999999999999974 467889999999
Q ss_pred ceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEEC-----------CCCC---------------
Q psy8748 1784 FLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLS-----------PDGQ--------------- 1837 (2004)
Q Consensus 1784 ~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafS-----------Pdg~--------------- 1837 (2004)
.|+|+.|..++.+++|+.|++|++|+...|... +.+.+|...|..++.+ |.++
T Consensus 249 ~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~-r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 249 SVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLC-RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred ceEEEEEcCCceEEecCCCceEEEEEccchhHH-HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 999999999999999999999999999998877 5568999999998876 2233
Q ss_pred ----------EEEEEECCCeEEEEECCC-CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC
Q psy8748 1838 ----------YFVTGSVDKSCKLWDFRE-KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1838 ----------~LaSGS~DGsIrIWDlrs-~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
.+++|++|+++.+|+... .+++....+|..-|+.+.|+||++++++++.|..|++||.++|+.+..+
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf-- 405 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF-- 405 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh--
Confidence 499999999999999764 4578888999999999999999999999999999999999999999988
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
.+|-..|..++|+.|.++|++|+.|.++++||+++.+....+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 406 RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 406 RGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=373.36 Aligned_cols=340 Identities=51% Similarity=0.919 Sum_probs=323.5
Q ss_pred hHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEE
Q psy8748 1640 QTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIW 1719 (2004)
Q Consensus 1640 ~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVW 1719 (2004)
+.++++.+..++..++.+.+....+..+...........++.+...++|+||.+.|.++.|++|++++++++.||.+.||
T Consensus 3 ~~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvW 82 (343)
T KOG0286|consen 3 ELEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVW 82 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhccccceeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEE
Confidence 34677888888999998888888888888888888888888999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEe
Q psy8748 1720 DTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTG 1799 (2004)
Q Consensus 1720 Dl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSg 1799 (2004)
|..+..+.+.++....+|..++|+|.|+++++|+-|+...||++...+........+.+.+|.+.+.++.|.+++.++++
T Consensus 83 Ds~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~ 162 (343)
T KOG0286|consen 83 DSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTG 162 (343)
T ss_pred EcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEec
Confidence 99999999999999999999999999999999999999999999977666677888899999999999999999999999
Q ss_pred ecCCeEEEEECCCCceeEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCC
Q psy8748 1800 SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG 1878 (2004)
Q Consensus 1800 S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg 1878 (2004)
+.|.+..+||+++++.. ..+.+|.+.|.+++++| +++.|++|+.|+..++||++.+.++++|.+|+..|++++|.|+|
T Consensus 163 SGD~TCalWDie~g~~~-~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G 241 (343)
T KOG0286|consen 163 SGDMTCALWDIETGQQT-QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSG 241 (343)
T ss_pred CCCceEEEEEcccceEE-EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCC
Confidence 99999999999999988 45579999999999999 99999999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEE
Q psy8748 1879 LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI 1958 (2004)
Q Consensus 1879 ~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsL 1958 (2004)
.-|++|+.|++.++||++..+.+..+.......+|++++|+..|++|++|..|.++.+||.-+++.+..+.+|.++|+++
T Consensus 242 ~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 242 DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL 321 (343)
T ss_pred CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE
Confidence 99999999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEE
Q psy8748 1959 SLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1959 aFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
..+|||..+++|++|.+++||.
T Consensus 322 ~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 322 GVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EECCCCcEEEecchhHheeecC
Confidence 9999999999999999999994
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=362.73 Aligned_cols=310 Identities=24% Similarity=0.364 Sum_probs=278.4
Q ss_pred cccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
++...+.||.++|.|++|+|+|..|++|+.|.++++||+.+.....+.++|..+|.|++|+|||+.|++|+.||.|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeC------CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFID------DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsd------d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
..+++ ...+.+.+|...|++++|.+ ..++++++.||.|+|||+..+.++ ....+|..+|+|+.|--+
T Consensus 186 pktg~-----~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~-~~lsgHT~~VTCvrwGG~- 258 (480)
T KOG0271|consen 186 PKTGQ-----QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV-RTLSGHTASVTCVRWGGE- 258 (480)
T ss_pred CCCCC-----cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE-EEeccCccceEEEEEcCC-
Confidence 98764 55678899999999999973 346999999999999999998887 445799999999999744
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEe-----------CCC-------------------------CE
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFH-----------PSG-------------------------LA 1880 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafS-----------Pdg-------------------------~~ 1880 (2004)
.++++|+.|++|++|+...|.+.+.+++|...|+.++.+ |.+ ..
T Consensus 259 gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er 338 (480)
T KOG0271|consen 259 GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER 338 (480)
T ss_pred ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence 489999999999999999999999999999999999876 223 34
Q ss_pred EEEEECCCeEEEEEccCCc-eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEE
Q psy8748 1881 FATGSEDKTARLFDIRADQ-QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSIS 1959 (2004)
Q Consensus 1881 LaSgS~DGtIrIWDLrtgk-~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLa 1959 (2004)
+++|+.|+++.+|+-...+ ++... .+|..-|..+.|+||+++||+++.|..|++||.++|+.+..+++|-+.|..++
T Consensus 339 lVSgsDd~tlflW~p~~~kkpi~rm--tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKKPITRM--TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred eEEecCCceEEEecccccccchhhh--hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 9999999999999976544 33333 46678899999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeecCCCCcccccC
Q psy8748 1960 LSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCVN 2004 (2004)
Q Consensus 1960 FSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~VtsVN 2004 (2004)
|+.|.++|++|+.|.++++|++.+.+ ...-..+|...|++||
T Consensus 417 wsaDsRLlVS~SkDsTLKvw~V~tkK---l~~DLpGh~DEVf~vD 458 (480)
T KOG0271|consen 417 WSADSRLLVSGSKDSTLKVWDVRTKK---LKQDLPGHADEVFAVD 458 (480)
T ss_pred eccCccEEEEcCCCceEEEEEeeeee---ecccCCCCCceEEEEE
Confidence 99999999999999999999999964 3455557888898876
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=346.10 Aligned_cols=428 Identities=17% Similarity=0.232 Sum_probs=307.5
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCc
Q psy8748 1553 PCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSS 1632 (2004)
Q Consensus 1553 ~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgS 1632 (2004)
.|..+++-..|||.|.|+|+ |...|+|||||...-+.++ -..+..+.|....+.. ...-+++....+|.
T Consensus 57 EH~~~vtVAkySPsG~yiAS-GD~sG~vRIWdtt~~~hiL--------Knef~v~aG~I~Di~W--d~ds~RI~avGEGr 125 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIAS-GDVSGKVRIWDTTQKEHIL--------KNEFQVLAGPIKDISW--DFDSKRIAAVGEGR 125 (603)
T ss_pred cccceeEEEEeCCCceEEee-cCCcCcEEEEeccCcceee--------eeeeeeccccccccee--CCCCcEEEEEecCc
Confidence 36678999999999999999 9999999999997733333 2233333332222221 11111111111110
Q ss_pred c-hhhhhHhH-----HHHHHHHHHHH-HHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCC
Q psy8748 1633 I-NIYLKLQT-----AELKKELTQLI-DKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSR 1705 (2004)
Q Consensus 1633 i-di~i~~~~-----~ql~k~i~ql~-s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~ 1705 (2004)
- .+.+..|. .++..+-..+- -.++..+.-+..+..++.......++.+ +-..+++.|..-|+|+.|+|||.
T Consensus 126 erfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF--KFk~s~r~HskFV~~VRysPDG~ 203 (603)
T KOG0318|consen 126 ERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF--KFKSSFREHSKFVNCVRYSPDGS 203 (603)
T ss_pred cceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe--eeeecccccccceeeEEECCCCC
Confidence 0 00000000 00000000000 0000011111111122222222333333 34568899999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEee---CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC-
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQVIP---LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY- 1781 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~ti~---~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh- 1781 (2004)
++|++|.||+|.+||-.+|+.+..+. +|.+.|.++.|+||+..+++++.|.++++||+.+.. ..+++...
T Consensus 204 ~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s------lv~t~~~~~ 277 (603)
T KOG0318|consen 204 RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS------LVSTWPMGS 277 (603)
T ss_pred eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc------eEEEeecCC
Confidence 99999999999999999999999997 899999999999999999999999999999998753 33333322
Q ss_pred --ccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEE
Q psy8748 1782 --EGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCV 1859 (2004)
Q Consensus 1782 --~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I 1859 (2004)
.+....+.|. ++.+++.+.+|.|.+++...+.. .....+|...|+++..++++++|++|+.||.|.-||..++..-
T Consensus 278 ~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~-~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 278 TVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSV-LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred chhceEEEEEEe-CCeEEEEEcCcEEEEecccCCCh-hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 2233445555 77899999999999999999984 4677899999999999999999999999999999997643210
Q ss_pred -----------EEEe--------------------------------------------------------------c--
Q psy8748 1860 -----------QTFF--------------------------------------------------------------G-- 1864 (2004)
Q Consensus 1860 -----------~tl~--------------------------------------------------------------~-- 1864 (2004)
..+. .
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~ 435 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT 435 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence 0000 0
Q ss_pred ------CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1865 ------HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1865 ------h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
......+++++|+++.+++|+.||+|++|.+..+..........|..++++++++||+.|||+|+..+.+.+||
T Consensus 436 ~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 436 KVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYD 515 (603)
T ss_pred cceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEE
Confidence 01124568899999999999999999999998776555545567889999999999999999999999999999
Q ss_pred CCCCeeeEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1939 LLKTTHNGV-LSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1939 L~tge~l~t-L~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
+.+.+.... +.-|..+|.+++|+|+..++|+|+-|-.|.||+++.... .+....+|..+|+.+
T Consensus 516 ~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~--~i~iknAH~~gVn~v 579 (603)
T KOG0318|consen 516 VASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK--HIIIKNAHLGGVNSV 579 (603)
T ss_pred cccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh--heEeccccccCceeE
Confidence 988877433 345999999999999999999999999999999998754 366678898887764
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=342.68 Aligned_cols=283 Identities=29% Similarity=0.496 Sum_probs=266.0
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecC--CCEEEEeecCCeEEEEEcCCC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQS--GNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPd--g~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
-|-+.+|..+.||.|++.||||+.+|.++||+..+...+.++.+|.+.|.++.|+|. +..+++|+.||++++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 456789999999999999999999999999999999999999999999999999996 669999999999999999753
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
..+..+.+|...|..++|++++ ++.+++.|.+-++||++++..+ ....+|...|.+++|++||..+++||.|
T Consensus 252 ------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El-L~QEGHs~~v~~iaf~~DGSL~~tGGlD 324 (459)
T KOG0272|consen 252 ------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL-LLQEGHSKGVFSIAFQPDGSLAATGGLD 324 (459)
T ss_pred ------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhh-HhhcccccccceeEecCCCceeeccCcc
Confidence 5677889999999999999655 5889999999999999999876 3457999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC-CCCE
Q psy8748 1846 KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS-SGRY 1924 (2004)
Q Consensus 1846 GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP-dG~~ 1924 (2004)
..-+|||++++.++..+.+|..+|.+++|+|+|..+++|+.|++++|||++..+...++ +.|..-|+.+.|+| .|.+
T Consensus 325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i--pAH~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI--PAHSNLVSQVKYSPQEGYF 402 (459)
T ss_pred chhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec--ccccchhhheEecccCCeE
Confidence 99999999999999999999999999999999999999999999999999988886666 67888999999999 7899
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
|++++.|++++||...++.+++.+.||.+.|.++++++|+.+++|++.|+++++|.
T Consensus 403 L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999999999999999999999999999999995
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=324.05 Aligned_cols=279 Identities=26% Similarity=0.397 Sum_probs=256.6
Q ss_pred CCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcchh
Q psy8748 1556 EQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSINI 1635 (2004)
Q Consensus 1556 ~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSidi 1635 (2004)
.+|..+.||+|++.||| |+.+|.++||+... +
T Consensus 176 rPis~~~fS~ds~~laT-~swsG~~kvW~~~~-------------~---------------------------------- 207 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLAT-GSWSGLVKVWSVPQ-------------C---------------------------------- 207 (459)
T ss_pred CcceeeEeecCCCeEEE-eecCCceeEeecCC-------------c----------------------------------
Confidence 36999999999999999 99999999999877 0
Q ss_pred hhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCC--CCEEEEEeCC
Q psy8748 1636 YLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGD--SRHCVSGSLD 1713 (2004)
Q Consensus 1636 ~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPD--G~~LASGS~D 1713 (2004)
..+.+|.||++.|.++.|+|. +..+|||+.|
T Consensus 208 -----------------------------------------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 208 -----------------------------------------------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred -----------------------------------------------ceeEEEeccccceeeEEEccCCCccceeeeccC
Confidence 024568899999999999996 5689999999
Q ss_pred CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD 1793 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd 1793 (2004)
|++++|++.+...+..+.+|...|..++|+|+|++|++++.|.+-++||+.++ .......||...|.+++|..+
T Consensus 241 gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk------~ElL~QEGHs~~v~~iaf~~D 314 (459)
T KOG0272|consen 241 GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK------SELLLQEGHSKGVFSIAFQPD 314 (459)
T ss_pred CceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc------hhhHhhcccccccceeEecCC
Confidence 99999999999999999999999999999999999999999999999999865 344556799999999999855
Q ss_pred -CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEE
Q psy8748 1794 -TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSV 1872 (2004)
Q Consensus 1794 -~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsI 1872 (2004)
..+++|+.|..-++||+++|.++ -++.+|..+|.+++|+|+|..+++|+.|++++|||++....+.++.+|..-|+.+
T Consensus 315 GSL~~tGGlD~~~RvWDlRtgr~i-m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~V 393 (459)
T KOG0272|consen 315 GSLAATGGLDSLGRVWDLRTGRCI-MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQV 393 (459)
T ss_pred CceeeccCccchhheeecccCcEE-EEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhhe
Confidence 55778999999999999999998 4567899999999999999999999999999999999999999999999999999
Q ss_pred EEeC-CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1873 CFHP-SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1873 afSP-dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
+|+| .|.+|++++.|+++++|..+++.++..+ .+|.+.|.++.+++++.++++++.|.++++|.
T Consensus 394 k~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL--aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 394 KYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL--AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EecccCCeEEEEcccCcceeeecCCCcccchhh--cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999 7889999999999999999999999888 57778999999999999999999999999995
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=329.10 Aligned_cols=393 Identities=22% Similarity=0.324 Sum_probs=304.4
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeeccccccccc-ccCccccc-cccCCC
Q psy8748 1553 PCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMS-QEPATFRD-LMMKPT 1630 (2004)
Q Consensus 1553 ~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s-~~~~~f~~-ll~spd 1630 (2004)
.|..+|--|+|+|.|..||+ |+.||.++|||+.. +.+...++|+..-+.. .+.+.+.. ++. .
T Consensus 103 ~He~Pvi~ma~~~~g~LlAt-ggaD~~v~VWdi~~-------------~~~th~fkG~gGvVssl~F~~~~~~~lL~--s 166 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLAT-GGADGRVKVWDIKN-------------GYCTHSFKGHGGVVSSLLFHPHWNRWLLA--S 166 (775)
T ss_pred ccCCCeEEEEEcCCCceEEe-ccccceEEEEEeeC-------------CEEEEEecCCCceEEEEEeCCccchhhee--e
Confidence 38999999999999999999 99999999999998 7777778776553333 01111101 001 1
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
+..+..++.|+ ... +-.+.+.+.+|...|++++|++|+.-++++
T Consensus 167 g~~D~~v~vwn-----------------------------------l~~-~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~ 210 (775)
T KOG0319|consen 167 GATDGTVRVWN-----------------------------------LND-KRTCLHTMILHKSAVTSLAFSEDSLELLSV 210 (775)
T ss_pred cCCCceEEEEE-----------------------------------ccc-CchHHHHHHhhhhheeeeeeccCCceEEEe
Confidence 11111111110 000 011577889999999999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecC-----CCEEEEeecCCeEEEEEcCCCCCCC---------------
Q psy8748 1711 SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQS-----GNFVACGGMDNMCTVYDLNNRDSTG--------------- 1770 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPd-----g~~LaSGS~DGtIrVWDl~t~~~~~--------------- 1770 (2004)
|.|..+.|||+.+.+...+.+.. ..+-++.+-++ +.+++++|.+|.+++||.+++....
T Consensus 211 ~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~ 289 (775)
T KOG0319|consen 211 GRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLA 289 (775)
T ss_pred ccCcEEEEeehhhhhhhheechh-hheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhccee
Confidence 99999999999777776666533 33666666665 6688888888888888876432100
Q ss_pred ----------------------c------------------------------------------ceEEEEEecCcccee
Q psy8748 1771 ----------------------A------------------------------------------AKVIRELLGYEGFLS 1786 (2004)
Q Consensus 1771 ----------------------~------------------------------------------~k~i~sl~gh~~~Vs 1786 (2004)
. ......+.+|...+.
T Consensus 290 ~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vl 369 (775)
T KOG0319|consen 290 IESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVL 369 (775)
T ss_pred ccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhhee
Confidence 0 000123456777777
Q ss_pred eeE-EeCCCcEEEeecCCeEEEEECCCCcee---EEeeccccCCeEEEEECCCC-CEEEEEECCCeEEEEECCCCeE---
Q psy8748 1787 SCR-FIDDTTLLTGSGDMKIVTWNLETGQRI---HEVAQAHIGDVVSISLSPDG-QYFVTGSVDKSCKLWDFREKKC--- 1858 (2004)
Q Consensus 1787 sva-fsdd~~LlSgS~DGtI~IWDl~tg~~i---~~il~~h~~~ItsLafSPdg-~~LaSGS~DGsIrIWDlrs~k~--- 1858 (2004)
++. |..+..+++|+.|.++++|.++.+... .....+|...|.+++++..+ .+|++++.|+++++|++...+.
T Consensus 370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 776 445557999999999999988544322 23356899999999997754 4899999999999999976221
Q ss_pred --EE----EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCC
Q psy8748 1859 --VQ----TFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN 1932 (2004)
Q Consensus 1859 --I~----tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDG 1932 (2004)
+. +...|...|+|++++|+.+.+++||.|.+.++|++.......++ .+|..++.++.|++..+.+++++.|+
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL--sGH~RGvw~V~Fs~~dq~laT~SgD~ 527 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL--SGHTRGVWCVSFSKNDQLLATCSGDK 527 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe--eCCccceEEEEeccccceeEeccCCc
Confidence 11 23479999999999999999999999999999999988888777 57888999999999999999999999
Q ss_pred eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1933 NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1933 sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
+|+||.+.+..+++++.||...|..+.|-.+|..|+||+.||-|++|+++++. ++++++.|...|+.+
T Consensus 528 TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e---C~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 528 TVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE---CEMTLDAHNDRVWAL 595 (775)
T ss_pred eEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh---hhhhhhhccceeEEE
Confidence 99999999999999999999999999999999999999999999999999984 577788898888764
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=293.18 Aligned_cols=287 Identities=35% Similarity=0.617 Sum_probs=256.4
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
.+.+++|.++|++++|+|+++++++++.||.|++|++.+++....+..|...+..+.|+++++.+++++.+|.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45678999999999999999999999999999999999998888889999999999999999999999999999999997
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCCcEEE-eecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLT-GSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlS-gS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
.+ .....+..+...+.++.|.+++.+++ ++.+|.|.+||+.+++....+ ..|...+.+++|+|++.++++++
T Consensus 82 ~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 82 TG------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred cc------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCEEEEEc
Confidence 54 34455667788899999997755554 555999999999987766444 47888999999999999988888
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC
Q psy8748 1844 VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~ 1923 (2004)
.||.|++||++.++.+..+..|...+.+++|+|+++.+++++.||.|++||+++++....+. .+...+.+++|++++.
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~ 232 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR--GHENGVNSVAFSPDGY 232 (289)
T ss_pred CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh--hcCCceEEEEEcCCCc
Confidence 89999999999888888888999999999999999999999999999999999887776663 4456899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1924 YIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1924 ~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
++++++.||.|++||+.+++....+.+|...|.+++|++++.++++++.||.|++|+
T Consensus 233 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999988899999999999999999999999999999999999999999999999996
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-31 Score=309.06 Aligned_cols=280 Identities=22% Similarity=0.377 Sum_probs=256.0
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
...|++++|+.+|..||+|+.||.+++|+ .+|..+.++..|.++|.++.|+.+|++|++++.||++.+||..++
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g----- 308 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG----- 308 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-----
Confidence 46899999999999999999999999999 588899999999999999999999999999999999999998754
Q ss_pred ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIW 1851 (2004)
.....+.-|......+.|.++..|++++.||.|+++.+.....+.++ .+|.++|.++.|+|.|.+|++++.|++++||
T Consensus 309 -~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiW 386 (524)
T KOG0273|consen 309 -TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIW 386 (524)
T ss_pred -eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceee-ecccCceEEEEECCCCceEEEecCCCeeEee
Confidence 44555556666667889999999999999999999999888877555 5699999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeCCC---------CEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1852 DFREKKCVQTFFGHEADVNSVCFHPSG---------LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1852 Dlrs~k~I~tl~~h~s~ItsIafSPdg---------~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
..........+.+|...|..+.|+|+| ..+++++.|++|++||+..+.++..+. .|..+|.+++|+|+|
T Consensus 387 s~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~--kH~~pVysvafS~~g 464 (524)
T KOG0273|consen 387 SMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM--KHQEPVYSVAFSPNG 464 (524)
T ss_pred ecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec--cCCCceEEEEecCCC
Confidence 999999999999999999999999965 468999999999999999999999984 566899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
+|+|+|+.||.|.+|+.++++..+.+.+ .+.|..++|+.+|..|..+-.||.+++-|+.
T Consensus 465 ~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 465 RYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999999999875 5569999999999999999999999998874
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-30 Score=316.16 Aligned_cols=302 Identities=19% Similarity=0.350 Sum_probs=264.0
Q ss_pred cccccccccccceeEEEEeCCCCEEEEEeCC-CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLD-GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG~~LASGS~D-GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
..++.|.--..+|..++|+..|.+||.|+.. |.+-||++.+...+...++|...+.+++++|||+++++|+.||.|+||
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 3455555566789999999999999998875 899999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
|... .-+..++..|...++.+.|. .++.+++.+-||+|+.||+.......++.....-...|++..|.|..++
T Consensus 378 n~~S------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~ 451 (893)
T KOG0291|consen 378 NTQS------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVC 451 (893)
T ss_pred eccC------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEE
Confidence 9974 36888999999999999999 5566899999999999999999888777666777789999999999999
Q ss_pred EEECCC-eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc-eeEEEcCCCCCCCeEEEEE
Q psy8748 1841 TGSVDK-SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ-QIATYLPPNKNSGFTSCAV 1918 (2004)
Q Consensus 1841 SGS~DG-sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk-~i~t~~~~~~~s~ItsLaf 1918 (2004)
+|+.|. .|++|++.+|+.+..+.+|+++|.+++|+|.++.+++++.|.+|++||+-... ...++ .....+..++|
T Consensus 452 AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsf 528 (893)
T KOG0291|consen 452 AGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSF 528 (893)
T ss_pred eeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEE
Confidence 998886 59999999999999999999999999999999999999999999999986442 33333 33456899999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc--------------------CCCCeEEEEEcCCCCEEEEEECCCeEEE
Q psy8748 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG--------------------HENRVTSISLSPNGMALVTSSWDQFVKV 1978 (2004)
Q Consensus 1919 SPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g--------------------Hs~~VtsLaFSPDg~~LaSgS~DGtIrI 1978 (2004)
.|+|+.+++++-||.|.+||...+.....+.+ .....+.+++++||.++++||..+.|++
T Consensus 529 rPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCi 608 (893)
T KOG0291|consen 529 RPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICI 608 (893)
T ss_pred cCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEE
Confidence 99999999999999999999987666644432 2356899999999999999999999999
Q ss_pred EECCCCeEEEEEEee
Q psy8748 1979 WQESNTIVWKVLKVY 1993 (2004)
Q Consensus 1979 Wdlstg~l~k~Ik~~ 1993 (2004)
|++.++..++..+.-
T Consensus 609 Y~v~~~vllkkfqiS 623 (893)
T KOG0291|consen 609 YDVPEGVLLKKFQIS 623 (893)
T ss_pred EECchhheeeeEEec
Confidence 999999777666643
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.9e-30 Score=312.04 Aligned_cols=300 Identities=25% Similarity=0.439 Sum_probs=249.7
Q ss_pred cccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCce--EEEeeCCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK--TQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~--l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
...+++.||-+.|.++.|+.|.++|++|+.|.++++|++...+. ...+.+|.++|.+.-|..+...+++.+.||.+.+
T Consensus 136 vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~ 215 (893)
T KOG0291|consen 136 VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFV 215 (893)
T ss_pred eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEE
Confidence 34667889999999999999999999999999999999887665 5667899999999999999999999999999999
Q ss_pred EEcCCCCCC-------------------Cc-------ceEE-EE-Eec--------------------------------
Q psy8748 1761 YDLNNRDST-------------------GA-------AKVI-RE-LLG-------------------------------- 1780 (2004)
Q Consensus 1761 WDl~t~~~~-------------------~~-------~k~i-~s-l~g-------------------------------- 1780 (2004)
|..+..... .. .... +. +..
T Consensus 216 W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP 295 (893)
T KOG0291|consen 216 WTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP 295 (893)
T ss_pred EEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence 998721000 00 0000 00 000
Q ss_pred ----------CccceeeeEEe-CCCcEEEeec-CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeE
Q psy8748 1781 ----------YEGFLSSCRFI-DDTTLLTGSG-DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSC 1848 (2004)
Q Consensus 1781 ----------h~~~Vssvafs-dd~~LlSgS~-DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsI 1848 (2004)
....|..+.|+ .++.++.|+. -|.+.+|+..+...+.+ ..+|...+++++++|||+++++|+.||.|
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK-QQgH~~~i~~l~YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK-QQGHSDRITSLAYSPDGQLIATGAEDGKV 374 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-ccccccceeeEEECCCCcEEEeccCCCcE
Confidence 11222233333 2333444443 37888888877766644 36899999999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEE
Q psy8748 1849 KLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCG 1928 (2004)
Q Consensus 1849 rIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSG 1928 (2004)
+|||...+-|..++..|...|+.+.|+..|+.+++++-||+|+.||+...+...++..+.. ....|++.+|.|..+++|
T Consensus 375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p-~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP-IQFSCVAVDPSGELVCAG 453 (893)
T ss_pred EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc-eeeeEEEEcCCCCEEEee
Confidence 9999999999999999999999999999999999999999999999999999999976543 567899999999999999
Q ss_pred eCCC-eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1929 SDDN-NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1929 SsDG-sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
+.|. .|.+|++.+|+.+..+.||.++|.+++|+|++..|+++++|.+|++|++-+.
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 9885 6999999999999999999999999999999999999999999999998543
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-30 Score=281.89 Aligned_cols=289 Identities=22% Similarity=0.390 Sum_probs=252.0
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
-+|+++|.|.+|++|...+|.+.++++..++.|..+...|+++.|++++.. .|++||+++.. ...+.++.+|.+.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~n----p~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNN----PNPVATFEGHTKN 85 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCC----CCceeEEeccCCc
Confidence 479999999999999999999999999889999999999999999999865 59999998764 3477889999999
Q ss_pred eeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q psy8748 1785 LSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863 (2004)
Q Consensus 1785 Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~ 1863 (2004)
|..+.|. ++..+++|++||+++|||++...+... ..|..+|+++..+|+...|++|..+|.|++||+....+...+.
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~--~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN--YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCcccchh--ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 9999998 455699999999999999998555433 3677999999999999999999999999999999887665553
Q ss_pred -cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEE----cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1864 -GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY----LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1864 -~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~----~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
.....|.++...|||.+++.+...|+.++|++-+......+ ....|.+.+..+.+|||+++|++++.|.+++||+
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 34568999999999999999999999999998765433222 2356778899999999999999999999999999
Q ss_pred CCCC-eeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1939 LLKT-THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1939 L~tg-e~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
..+. +....+.+|...+.+.+||.||.||++|+.|+.+++|++..+ +.++.+++|.++-.|+
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~---k~v~qy~gh~K~~vc~ 306 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG---KEVRQYQGHHKAAVCV 306 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC---ceeeecCCcccccEEE
Confidence 9887 666778999999999999999999999999999999999998 4567788887766664
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=317.92 Aligned_cols=298 Identities=21% Similarity=0.354 Sum_probs=266.1
Q ss_pred cccccccccccccceeEEEEe-CCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEE
Q psy8748 1681 KLMPKKSLKGHINKVNSVHYS-GDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCT 1759 (2004)
Q Consensus 1681 k~~pi~sL~GHt~~VtsLaFS-PDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIr 1759 (2004)
...+.+.+-|..+.|.+++|- |+.+++|.+++.+.+++++..+..+. .+.+|+..|.++....+|.+|++|+.|.+++
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 445677888999999999986 67889999999999999998777665 7899999999999666788999999999999
Q ss_pred EEEcCCCCCCCcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCce----eE----EeeccccCCeEE
Q psy8748 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQR----IH----EVAQAHIGDVVS 1829 (2004)
Q Consensus 1760 VWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~----i~----~il~~h~~~Its 1829 (2004)
+|.++++. ..........+|...+.+++++.. ..|++++.|+++++|++...+. +. .....|...|.|
T Consensus 391 lWr~~~~~--~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 391 LWRLNNNC--SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEecCCc--chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 99995432 244556677899999999999743 4699999999999999976221 11 123579999999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCC
Q psy8748 1830 ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNK 1909 (2004)
Q Consensus 1830 LafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~ 1909 (2004)
++++|+.+.+++|+.|.+.+||++.+.....++.+|...|+|+.|+|..+.++++|.|++|+||.+.++.++.++ .+|
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~--eGH 546 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF--EGH 546 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee--cCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 577
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
...|..+.|-.+|..|++++.||-|++|++++++|..++.+|.++|++++.++.+.+++||+.||.|.+|.-.+
T Consensus 547 ~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 547 TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999997654
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=283.39 Aligned_cols=290 Identities=25% Similarity=0.395 Sum_probs=253.4
Q ss_pred ccccccccccceeEEEEeCC-CCEEEEEeCCCeEEEEECC-----CCceEEEeeCCCCceEEEEEecCCCEEEEeecCCe
Q psy8748 1684 PKKSLKGHINKVNSVHYSGD-SRHCVSGSLDGKLIIWDTW-----TGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNM 1757 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPD-G~~LASGS~DGtIrVWDl~-----Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGt 1757 (2004)
...+|.+|++.|+.++..+. .+.+++++.|.++.+|++. .|...+.+.+|...|..+..++||++.++++.||.
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 45678999999999999986 5688999999999999764 46778899999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC-
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD- 1835 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd- 1835 (2004)
+++||+.++ +..+.+.+|...|.+++++++ .++++|+.|.+|++|+...+......-..+.+.|.|+.|+|+
T Consensus 87 lrlWDl~~g------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 87 LRLWDLATG------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred EEEEEecCC------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 999999864 567889999999999999955 569999999999999998665553333334888999999997
Q ss_pred -CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeE
Q psy8748 1836 -GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1836 -g~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~It 1914 (2004)
..+|++++.|++|++||+++.+....+.+|.+.++.++++|||...++|+.||.+.+||++.++.+..+ .+...|.
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl---~a~~~v~ 237 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL---EAFDIVN 237 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec---cCCCeEe
Confidence 679999999999999999999999999999999999999999999999999999999999999998777 5567899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc----C-----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1915 SCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG----H-----ENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1915 sLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g----H-----s~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
+++|+|+...|+.+.. ..|+|||+.++.++..++. . .-...+++|++||..|++|..|+.|++|.+..
T Consensus 238 sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred eEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 9999998877777654 4599999999888776642 1 22357789999999999999999999998753
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=296.86 Aligned_cols=293 Identities=28% Similarity=0.441 Sum_probs=272.5
Q ss_pred cccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1681 KLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1681 k~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
++.....+.||..+|+.+-|+|+-..+++++.|++|++||..+|+....+++|...+.++.|+..|+++++++.|-.+++
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEE
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYF 1839 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~L 1839 (2004)
||.+. ....++...+|...+.++.|.+ ++++++++.|.+|+.|++.+|.++.. +.+|...|..+..+.||..+
T Consensus 177 Wd~~~-----~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t-~~~h~ewvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 177 WDFDT-----FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT-FPGHSEWVRMVRVNQDGTII 250 (406)
T ss_pred eeHHH-----HHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEe-ccCchHhEEEEEecCCeeEE
Confidence 99975 3567788889999999999984 56799999999999999999999854 57899999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC---------------CCEEEEEECCCeEEEEEccCCceeEEE
Q psy8748 1840 VTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPS---------------GLAFATGSEDKTARLFDIRADQQIATY 1904 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPd---------------g~~LaSgS~DGtIrIWDLrtgk~i~t~ 1904 (2004)
++++.|.++++|-+.++++...++.|+.+|.|++|.|. +.++.+++.|++|++||+.++.++.++
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 99999999999999999988999999999999999873 258999999999999999999999888
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1905 LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1905 ~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
.+|...|..++|+|.|+||+++.+|+++++||++++++.+.+..|..-|+++.|+.+..++++|+-|.++++|.-
T Consensus 331 --~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 331 --VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred --ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 567789999999999999999999999999999999999999999999999999999999999999999999964
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=287.40 Aligned_cols=329 Identities=21% Similarity=0.277 Sum_probs=288.2
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccC
Q psy8748 1549 NAPEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMK 1628 (2004)
Q Consensus 1549 ~a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~s 1628 (2004)
+.-..|++.|.+++.+|+.+++|| |+.|-.-.+|+..+ +.
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aT-GGgDD~AflW~~~~-------------ge-------------------------- 97 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVAT-GGGDDLAFLWDIST-------------GE-------------------------- 97 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEe-cCCCceEEEEEccC-------------Cc--------------------------
Confidence 334459999999999999999999 99998999999877 11
Q ss_pred CCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEE
Q psy8748 1629 PTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCV 1708 (2004)
Q Consensus 1629 pdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LA 1708 (2004)
....+.||++.|+++.||.||.+||
T Consensus 98 -------------------------------------------------------~~~eltgHKDSVt~~~FshdgtlLA 122 (399)
T KOG0296|consen 98 -------------------------------------------------------FAGELTGHKDSVTCCSFSHDGTLLA 122 (399)
T ss_pred -------------------------------------------------------ceeEecCCCCceEEEEEccCceEEE
Confidence 1234678999999999999999999
Q ss_pred EEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeee
Q psy8748 1709 SGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSC 1788 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssv 1788 (2004)
||+.+|.|+||+..+|.....+...-..|.=+.|+|.+..|+.|+.||.+.+|.+.+. ...+.+.+|...+++-
T Consensus 123 TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~------~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 123 TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ------ALCKVMSGHNSPCTCG 196 (399)
T ss_pred ecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc------ceeeEecCCCCCcccc
Confidence 9999999999999999998888766677888999999999999999999999999753 5667888999999999
Q ss_pred EEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe----
Q psy8748 1789 RFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF---- 1863 (2004)
Q Consensus 1789 afsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~---- 1863 (2004)
.|.+ +.+++++..||+|++||..+++.++++........+++.++..+..++.|..++.+++....+++.+....
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 9885 45699999999999999999999988866667778899999999999999999999999999998877766
Q ss_pred ----cCCCCeEEEEEeC---CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy8748 1864 ----GHEADVNSVCFHP---SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHV 1936 (2004)
Q Consensus 1864 ----~h~s~ItsIafSP---dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrI 1936 (2004)
.+...+.|+.+.| .-.+.++|+.||+|.|||+...+....+ .|..+|+.+.|-+ ..+|++++.+|.|+.
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c---~he~~V~~l~w~~-t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC---EHEDGVTKLKWLN-TDYLLTACANGKVRQ 352 (399)
T ss_pred cccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec---cCCCceEEEEEcC-cchheeeccCceEEe
Confidence 3444555555554 5567899999999999999887776666 4556799999998 889999999999999
Q ss_pred EECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1937 WDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1937 WDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
||.++|+++..+.||...|.+++++|++++++|+|.|++.+||+..
T Consensus 353 wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 353 WDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999999999999999999875
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=279.05 Aligned_cols=290 Identities=25% Similarity=0.395 Sum_probs=247.7
Q ss_pred CCCCCCCeEEEEEccCCC-EEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1551 PEPCKEQRNAVSFHACST-LLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk-~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
.+.|++.|+.++..+.+. .|.+ ++.|.++.+|++.. +. ..
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~s-asrDk~ii~W~L~~--------------------dd----------~~-------- 51 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVS-ASRDKTIIVWKLTS--------------------DD----------IK-------- 51 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEE-cccceEEEEEEecc--------------------Cc----------cc--------
Confidence 457999999999999955 5555 99999999999977 00 00
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVS 1709 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LAS 1709 (2004)
-..+++.+.||...|..++.++||++.++
T Consensus 52 ---------------------------------------------------~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 52 ---------------------------------------------------YGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred ---------------------------------------------------cCceeeeeeccceEecceEEccCCceEEe
Confidence 01256788999999999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEec--Cccceee
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLG--YEGFLSS 1787 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~g--h~~~Vss 1787 (2004)
++.||++++||+.+|+..+.|.+|...|.+++|++|.+.+++|+.|.+|++|++-.. ...+... +.+.|.|
T Consensus 81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-------ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-------CKYTIHEDSHREWVSC 153 (315)
T ss_pred ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-------EEEEEecCCCcCcEEE
Confidence 999999999999999999999999999999999999999999999999999998542 2333332 3789999
Q ss_pred eEEeCCC---cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEec
Q psy8748 1788 CRFIDDT---TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG 1864 (2004)
Q Consensus 1788 vafsdd~---~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~ 1864 (2004)
+.|+|+. .+++++.|++|++||+++.+.. ..+.+|.+.++.++++|||...++|+.||.+.+||++.++.+..+ +
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~-~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~ 231 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLR-TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-E 231 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchh-hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-c
Confidence 9999763 5999999999999999987766 445689999999999999999999999999999999999998777 6
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCC-------CCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy8748 1865 HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNK-------NSGFTSCAVSSSGRYIFCGSDDNNVHVW 1937 (2004)
Q Consensus 1865 h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~-------~s~ItsLafSPdG~~LaSGSsDGsIrIW 1937 (2004)
|...|.+++|+|+...|+.+. +..|+|||+.++..+..+..... .....+++|++||..|++|..|+.|++|
T Consensus 232 a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 789999999999987777665 55699999999888766643322 2345688999999999999999999999
Q ss_pred ECC
Q psy8748 1938 DLL 1940 (2004)
Q Consensus 1938 DL~ 1940 (2004)
.+.
T Consensus 311 qv~ 313 (315)
T KOG0279|consen 311 QVA 313 (315)
T ss_pred Eee
Confidence 874
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=283.87 Aligned_cols=289 Identities=22% Similarity=0.384 Sum_probs=256.6
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECC-CCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTW-TGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~-Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
|...+.||.+.|+.+.|+|+|.+||+||.|..|.+|++. .-+....+++|.+.|..+.|.+|++.+++++.|.+++.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 566788999999999999999999999999999999954 4466778899999999999999999999999999999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
.+++ +..+...+|...+..+.-..- ..+.+++.||++++||+++...++.+ ..+.+++++.|..++..++
T Consensus 119 ~~tG------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~--~~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 119 AETG------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF--ENKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred cccc------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc--ccceeEEEEEeccccccee
Confidence 9865 667788889999988885433 34778899999999999988877554 3456799999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCC----ceeEEEcCCCCC--CCeE
Q psy8748 1841 TGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRAD----QQIATYLPPNKN--SGFT 1914 (2004)
Q Consensus 1841 SGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtg----k~i~t~~~~~~~--s~It 1914 (2004)
+|+-|+.|++||++.+.....+.+|.++|+.+..+++|.++.+-+.|.++++||++-. +++..+....|. ....
T Consensus 191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999753 346666554443 3456
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1915 SCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1915 sLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
.++|+|+++.+.+|+.|..+++||......+..+.||.+.|.+++|+|...+|.+++.|.+|++=.
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 789999999999999999999999999899999999999999999999999999999999998643
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=273.49 Aligned_cols=260 Identities=19% Similarity=0.349 Sum_probs=230.1
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
+.|+.+.+.||++.||+++. -.|++||+.++. .+.++.+|+..|+++.|..+|+.+++|+.||+++|||++..
T Consensus 41 sqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~---- 115 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL---- 115 (311)
T ss_pred cceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc----
Confidence 57889999999999999986 579999999875 58899999999999999999999999999999999999763
Q ss_pred cceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIr 1849 (2004)
.......+..+|.++..+++ ..+++|..+|.|++||+....+...........|.++.+.|||.+++.+...|..+
T Consensus 116 ---~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cy 192 (311)
T KOG0315|consen 116 ---SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCY 192 (311)
T ss_pred ---ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEE
Confidence 23445556789999988865 46999999999999999998887777777778899999999999999999999999
Q ss_pred EEECCCC------eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC
Q psy8748 1850 LWDFREK------KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1850 IWDlrs~------k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~ 1923 (2004)
+|++-.. +++..++.|.+.+..+.++|++++|++++.|.+++||+..+. ........++...+..++||.||.
T Consensus 193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~ 271 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGE 271 (311)
T ss_pred EEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCcc
Confidence 9998653 456778899999999999999999999999999999999887 444444567778999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEc
Q psy8748 1924 YIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLS 1961 (2004)
Q Consensus 1924 ~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFS 1961 (2004)
||++|+.|+.+++||+..++.+....+|.....|++..
T Consensus 272 YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 272 YLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 99999999999999999999999999999888887763
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=300.61 Aligned_cols=288 Identities=23% Similarity=0.415 Sum_probs=257.5
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
.++.||...|+++++|.+...+++|+ .+.+++|+..++++++++... .+.+..|.|.++++++|...|.+.+||+..
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 46789999999999999988888876 578999999999999998754 789999999999999999999999999975
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCC-----CceeE--E----eeccccCCeEEEEEC
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLET-----GQRIH--E----VAQAHIGDVVSISLS 1833 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~t-----g~~i~--~----il~~h~~~ItsLafS 1833 (2004)
. ........|.+.++.++..+++ .+++|+.|.+|++||..- |.... . ..-.....|.|+.++
T Consensus 444 ~------~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 444 A------SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred h------hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 3 4556677899999999998655 599999999999999742 11111 1 112345789999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCe
Q psy8748 1834 PDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGF 1913 (2004)
Q Consensus 1834 Pdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~I 1913 (2004)
|||++++++--|+++++|-+++-+....+.+|.-||.|+..+||++.+++||.|.+|++|-++-|.+-..+ ..|...|
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~--fAHdDSv 595 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF--FAHDDSV 595 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh--hcccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887 4677889
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1914 TSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1914 tsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
.++.|-|+...+++++.||.|+-||..+.+.+.++.+|...|++++.+|+|.+++++|.|..|++|.....
T Consensus 596 m~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 596 MSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred eEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998774
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-28 Score=271.99 Aligned_cols=282 Identities=34% Similarity=0.558 Sum_probs=246.0
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCc
Q psy8748 1553 PCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSS 1632 (2004)
Q Consensus 1553 ~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgS 1632 (2004)
.|+++|++++|+|+|++|++ |+.||.+++|+..+ .+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~-~~~~g~i~i~~~~~-------------~~------------------------------ 42 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLAT-GSGDGTIKVWDLET-------------GE------------------------------ 42 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEE-eecCcEEEEEEeeC-------------CC------------------------------
Confidence 58889999999999999999 99999999999877 11
Q ss_pred chhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeC
Q psy8748 1633 INIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSL 1712 (2004)
Q Consensus 1633 idi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~ 1712 (2004)
....+.+|...+.++.|+++++++++++.
T Consensus 43 ---------------------------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 71 (289)
T cd00200 43 ---------------------------------------------------LLRTLKGHTGPVRDVAASADGTYLASGSS 71 (289)
T ss_pred ---------------------------------------------------cEEEEecCCcceeEEEECCCCCEEEEEcC
Confidence 01234457788899999999999999999
Q ss_pred CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC
Q psy8748 1713 DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID 1792 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd 1792 (2004)
||.|++||+.+++....+..|...|.++.|+++++++++++.+|.|.+|++.+. .....+..|...+.++.+.+
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG------KCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc------EEEEEeccCCCcEEEEEEcC
Confidence 999999999998888889999999999999999899999888999999999743 44555667888999999998
Q ss_pred CCcEEEe-ecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEE
Q psy8748 1793 DTTLLTG-SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNS 1871 (2004)
Q Consensus 1793 d~~LlSg-S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~Its 1871 (2004)
++.++++ +.+|.|++||+++++....+ ..|...+.+++|+|+++.+++++.||.|++||++.++.+..+..|...+.+
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 224 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeE-ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEE
Confidence 6655554 45999999999987776444 577789999999999999999999999999999998888888888999999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1872 VCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1872 IafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
++|+|++.++++++.||.|++||+.+++....+. .+...+.+++|+++++++++++.||.|++|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999998888888889999999999888777764 5567899999999999999999999999996
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=286.38 Aligned_cols=298 Identities=24% Similarity=0.390 Sum_probs=269.3
Q ss_pred CCCcccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC
Q psy8748 1676 DAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD 1755 (2004)
Q Consensus 1676 ~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D 1755 (2004)
+.++.+|+..+++.||.+.|.|+++.|-.+++++|+.|++|+|||+.+|+...++.+|...|..+++++...|+++++.|
T Consensus 135 PeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 135 PEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred ccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCC
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
+.|+.||++.. +.++.+.||-..|.|+...+. +.+++|+.|..+++||+++...+ ..+.+|..+|.++.+.|
T Consensus 215 k~VKCwDLe~n------kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V-~~l~GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 215 KQVKCWDLEYN------KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV-HVLSGHTNPVASVMCQP 287 (460)
T ss_pred CeeEEEechhh------hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceE-EEecCCCCcceeEEeec
Confidence 99999999854 678889999999999998864 56999999999999999999888 44579999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeE
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~It 1914 (2004)
-...+++|+.|++|++||++.++...++..|...+++++.+|....|++++.| .|+-|++..|..+..+ .++...+.
T Consensus 288 ~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl--sgh~~iin 364 (460)
T KOG0285|consen 288 TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL--SGHNAIIN 364 (460)
T ss_pred CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc--ccccceee
Confidence 88899999999999999999999999999999999999999999999999877 5999999988887774 56778889
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc--------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1915 SCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG--------HENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1915 sLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g--------Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
+++...|| ++++|+++|.+.+||.++|...+.... .+..|.+.+|...|..|++|..|.+|++|.-++.
T Consensus 365 tl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 365 TLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred eeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 99988765 678899999999999998876655521 3457899999999999999999999999987654
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-28 Score=286.26 Aligned_cols=330 Identities=17% Similarity=0.239 Sum_probs=266.7
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
|+.-|+||+|||||.+.|| .+.||+|.++|-.+ +..+..+..
T Consensus 189 HskFV~~VRysPDG~~Fat-~gsDgki~iyDGkt-------------ge~vg~l~~------------------------ 230 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFAT-AGSDGKIYIYDGKT-------------GEKVGELED------------------------ 230 (603)
T ss_pred cccceeeEEECCCCCeEEE-ecCCccEEEEcCCC-------------ccEEEEecC------------------------
Confidence 7778999999999999999 99999999999877 443333321
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCC
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLD 1713 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~D 1713 (2004)
-.+|++.|.+++|+||++.++|++.|
T Consensus 231 ------------------------------------------------------~~aHkGsIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 231 ------------------------------------------------------SDAHKGSIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred ------------------------------------------------------CCCccccEEEEEECCCCceEEEecCC
Confidence 12599999999999999999999999
Q ss_pred CeEEEEECCCCceEEE-------------------------------------------eeCCCCceEEEEEecCCCEEE
Q psy8748 1714 GKLIIWDTWTGNKTQV-------------------------------------------IPLRSAWVMSVAFAQSGNFVA 1750 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~t-------------------------------------------i~~Ht~~ItsLafSPdg~~La 1750 (2004)
.+++|||+.+.+.+++ +.+|...|+++..++++.+|+
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY 336 (603)
T ss_pred ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence 9999999876544332 347888999999999999999
Q ss_pred EeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCcee-----------E--
Q psy8748 1751 CGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRI-----------H-- 1817 (2004)
Q Consensus 1751 SGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i-----------~-- 1817 (2004)
+|+.||.|.-|+...+... ...-.+|...|.++.-...+.+++.+.|.++++.++..+... .
T Consensus 337 SgsyDG~I~~W~~~~g~~~-----~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~l 411 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSD-----RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGL 411 (603)
T ss_pred eeccCceEEEEecCCcccc-----ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeE
Confidence 9999999999999765311 112256888888888888888999999999999876432100 0
Q ss_pred -----------------Eeec--------cccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE--EEEEecCCCCeE
Q psy8748 1818 -----------------EVAQ--------AHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC--VQTFFGHEADVN 1870 (2004)
Q Consensus 1818 -----------------~il~--------~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~--I~tl~~h~s~It 1870 (2004)
.++. .-.....+++++|++..+++|+.||.|++|.+..+.. ......|.++|+
T Consensus 412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT 491 (603)
T KOG0318|consen 412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAIT 491 (603)
T ss_pred EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCce
Confidence 0011 1122456889999999999999999999999987543 345568999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEEEc
Q psy8748 1871 SVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTH-NGVLS 1949 (2004)
Q Consensus 1871 sIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~-l~tL~ 1949 (2004)
+++|+||+.+|++|...+++.+||..+.+..... -.-|...|.+++|+|+..++|+|+-|-.|.||++.+... +....
T Consensus 492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~-w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ikn 570 (603)
T KOG0318|consen 492 DVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR-WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKN 570 (603)
T ss_pred EEEECCCCcEEEEeccCCcEEEEEcccCceecce-eeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecc
Confidence 9999999999999999999999999887763222 233668899999999999999999999999999977543 44446
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1950 GHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1950 gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
+|...|+.+.|- |...+++.|.|..|++|++.
T Consensus 571 AH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 571 AHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 799999999997 44579999999999999874
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=299.14 Aligned_cols=282 Identities=26% Similarity=0.435 Sum_probs=250.9
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
-.-+|..+.|.|+|+.|++|+..|.+.+|+..+.........|+.+|+++.|+++|.++++|+.+|.|++|+.+-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm----- 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM----- 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-----
Confidence 345899999999999999999999999999865555555678999999999999999999999999999999853
Q ss_pred cceEEEEEecCc-cceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeE
Q psy8748 1771 AAKVIRELLGYE-GFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSC 1848 (2004)
Q Consensus 1771 ~~k~i~sl~gh~-~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsI 1848 (2004)
..++.+..|. ..|.+++|++ +..|+++++||.|+|||....+.. ..+.+|.-.|.+++|+|....+++|+.|..|
T Consensus 170 --nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee-~vL~GHgwdVksvdWHP~kgLiasgskDnlV 246 (464)
T KOG0284|consen 170 --NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE-RVLRGHGWDVKSVDWHPTKGLIASGSKDNLV 246 (464)
T ss_pred --hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh-heeccCCCCcceeccCCccceeEEccCCcee
Confidence 3344445554 8899999994 567999999999999999877665 3458999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC-CCCEEEE
Q psy8748 1849 KLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS-SGRYIFC 1927 (2004)
Q Consensus 1849 rIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP-dG~~LaS 1927 (2004)
++||.+++.++.++.+|+..|..+.|++++++|+++|.|..++++|+++.+.+..+ .+|...++++.|+| ...++.+
T Consensus 247 KlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~--r~Hkkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 247 KLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY--RGHKKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred EeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh--hcchhhheeeccccccccceee
Confidence 99999999999999999999999999999999999999999999999988887777 46778899999999 6678899
Q ss_pred EeCCCeEEEEECCCCeeeEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1928 GSDDNNVHVWDLLKTTHNGVL-SGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1928 GSsDGsIrIWDL~tge~l~tL-~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
|+.||.|..|.+...+++..+ .+|.+.|++++|+|-|..|++|+.|.++++|...
T Consensus 325 gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999999999855555554 5799999999999999999999999999999764
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-28 Score=271.55 Aligned_cols=285 Identities=21% Similarity=0.352 Sum_probs=250.3
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccC
Q psy8748 1549 NAPEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMK 1628 (2004)
Q Consensus 1549 ~a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~s 1628 (2004)
....+|...|.+|.|++|.++|+| ++.||.+.|||.-+ .....
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivS-aSqDGklIvWDs~T-------------tnK~h----------------------- 91 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVS-ASQDGKLIVWDSFT-------------TNKVH----------------------- 91 (343)
T ss_pred EEecccccceeeeEecCCcCeEEe-eccCCeEEEEEccc-------------cccee-----------------------
Confidence 445679999999999999999999 99999999999877 11111
Q ss_pred CCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEE
Q psy8748 1629 PTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCV 1708 (2004)
Q Consensus 1629 pdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LA 1708 (2004)
.+.--...|..++|+|.|+++|
T Consensus 92 ----------------------------------------------------------aipl~s~WVMtCA~sPSg~~VA 113 (343)
T KOG0286|consen 92 ----------------------------------------------------------AIPLPSSWVMTCAYSPSGNFVA 113 (343)
T ss_pred ----------------------------------------------------------EEecCceeEEEEEECCCCCeEE
Confidence 1111345789999999999999
Q ss_pred EEeCCCeEEEEECCCC------ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCc
Q psy8748 1709 SGSLDGKLIIWDTWTG------NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYE 1782 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~Tg------k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~ 1782 (2004)
+||-|+...||++.+. +..+.+.+|++.+.|+.|-+ ...|++++.|.++.+||++++ .....+.+|.
T Consensus 114 cGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g------~~~~~f~GH~ 186 (343)
T KOG0286|consen 114 CGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETG------QQTQVFHGHT 186 (343)
T ss_pred ecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccc------eEEEEecCCc
Confidence 9999999999999855 44567899999999999986 667899999999999999865 6778899999
Q ss_pred cceeeeEEeC--CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEE
Q psy8748 1783 GFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1783 ~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~ 1860 (2004)
+.|.++.+.+ .+.+++|+.|+..++||++.+.+. +.+.+|...|.+++|.|+|.-|++|+.|++.++||++..+.+.
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~-qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a 265 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV-QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELA 265 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccCccee-EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEe
Confidence 9999999986 456999999999999999999887 5568999999999999999999999999999999999988887
Q ss_pred EEec--CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1861 TFFG--HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1861 tl~~--h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
.+.. ...+|++++|+..|+++++|..|.++.+||.-.++....+ .+|...|+|+..+|||.-+++|+.|..++||.
T Consensus 266 ~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L--~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 266 VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL--AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe--eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 7753 2457999999999999999999999999999988888877 47778999999999999999999999999994
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=284.48 Aligned_cols=301 Identities=20% Similarity=0.350 Sum_probs=250.5
Q ss_pred CCCcccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEeeCCCCceEEEEEecCCCEEEEe
Q psy8748 1676 DAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG---NKTQVIPLRSAWVMSVAFAQSGNFVACG 1752 (2004)
Q Consensus 1676 ~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg---k~l~ti~~Ht~~ItsLafSPdg~~LaSG 1752 (2004)
....++.+..+.+..|++.|+-+.||++|+|||+++.|.+..+|++... +..+++.+|..+|..+.|+||.++++++
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 3445567778899999999999999999999999999999999987654 3467788999999999999999999999
Q ss_pred ecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEE
Q psy8748 1753 GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSIS 1831 (2004)
Q Consensus 1753 S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLa 1831 (2004)
+.+..+++||+.+++...... .++...+.+++|.+++ .+++|+.|+.+..||.+.... ..........|.+++
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~-----~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYP-----SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLA 361 (519)
T ss_pred CchHheeeccCCcchhhhhcc-----cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEE
Confidence 999999999999875322111 1245677788887554 599999999999999975442 222222345699999
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCC
Q psy8748 1832 LSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNS 1911 (2004)
Q Consensus 1832 fSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s 1911 (2004)
..+||+++++.+.|..|++|+..+......+ ....+|++++.+.+++++++.-.+..+++||+...+.+.++..+....
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~ 440 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH 440 (519)
T ss_pred EcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc
Confidence 9999999999999999999998876554333 456789999999999999999999999999999888888886555444
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC
Q psy8748 1912 GFTSCAVSS-SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP-NGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1912 ~ItsLafSP-dG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSP-Dg~~LaSgS~DGtIrIWdlst 1983 (2004)
-+..-+|.- +..++++|++|+.|+||+..+|+++..+.||...|++++|+| +..++|+||+||+||||....
T Consensus 441 fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 455556655 558999999999999999999999999999999999999999 456799999999999998875
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=265.43 Aligned_cols=288 Identities=23% Similarity=0.347 Sum_probs=245.4
Q ss_pred cccccccccccceeEEEEeCC-CCEEEEEeCCCeEEEEECCCCc---eEEEe-eCCCCceEEEEEecCCCEEEEeecCCe
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGD-SRHCVSGSLDGKLIIWDTWTGN---KTQVI-PLRSAWVMSVAFAQSGNFVACGGMDNM 1757 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPD-G~~LASGS~DGtIrVWDl~Tgk---~l~ti-~~Ht~~ItsLafSPdg~~LaSGS~DGt 1757 (2004)
...+.+.||+++|..++|+|- |..||+||.|+.|++|+...+. +...+ .+|+..|++++|+|.|++|++|+.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 346788999999999999997 8899999999999999987532 33333 469999999999999999999999999
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCcee--EEeeccccCCeEEEEECC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRI--HEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i--~~il~~h~~~ItsLafSP 1834 (2004)
+.||.-..+ .++....+.||...|.+++|+ ++++|++++.|..|.+|.+..+... ..++..|...|..+.|||
T Consensus 85 ~~Iw~k~~~----efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 85 VVIWKKEDG----EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred EEEeecCCC----ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence 999986543 678899999999999999999 5667999999999999999855432 355789999999999999
Q ss_pred CCCEEEEEECCCeEEEEECC---CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCC
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFR---EKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNS 1911 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlr---s~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s 1911 (2004)
...+|++++.|++|++|+-. +..++.++.+|...|.+++|++.|..+++++.|++++||...+. ....+..
T Consensus 161 t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~------~~~~~sr 234 (312)
T KOG0645|consen 161 TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD------LSGMHSR 234 (312)
T ss_pred CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC------cchhccc
Confidence 99999999999999999866 45789999999999999999999999999999999999986622 2234456
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------ee-EEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECC
Q psy8748 1912 GFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT------HN-GVLSGHENRVTSISLSPN-GMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1912 ~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge------~l-~tL~gHs~~VtsLaFSPD-g~~LaSgS~DGtIrIWdls 1982 (2004)
.+..+.|. ...|++|+.|+.|++|.-.... .+ +.-..|...|+++.|.|. .++|++||+||.|++|.+.
T Consensus 235 ~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 235 ALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 78889998 5689999999999999765421 11 123569999999999994 7889999999999999875
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=303.56 Aligned_cols=208 Identities=26% Similarity=0.453 Sum_probs=196.2
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
..++|.||+++|..+.|+|+.++|++++.|+++|+|.+.+...+..+++|..+|.++.|+|.|-++++++.|++-++|..
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
+. ....+.+.+|-..+.|+.|+++ +++++|+.|.+|++||+.+|..+ +++.+|.++|++++|+|+|++|++|
T Consensus 523 d~------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-RiF~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 523 DH------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-RIFTGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred cc------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-EEecCCCCceEEEEEcCCCceEeec
Confidence 75 3667888999999999999965 57999999999999999999997 6678999999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCC
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRAD 1898 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtg 1898 (2004)
+.||.|.+||+.++..+..+.+|.+.|.++.|+.+|..|++|+.|.+|++||+..-
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999999999999999999999999999999999999999998643
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=301.78 Aligned_cols=292 Identities=28% Similarity=0.521 Sum_probs=260.7
Q ss_pred ccccccc-ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1685 KKSLKGH-INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1685 i~sL~GH-t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
...+.+| ...|.++.|+++|+++++++.|+.+++|+..+++ ..+.+.+|...|.+++|+|++.++++++.|++|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 4455554 8899999999999999999999999999998777 677778999999999999999999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
|+.. .....+.+.+|...+.+++|++.+ .+++|+.|++|++||++++++. ..+.+|.+.|++++|++++++++
T Consensus 231 d~~~-----~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~-~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 231 DLKD-----DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECV-RKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred eccC-----CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEE-EeeeccCCceEEEEECCCCCEEE
Confidence 9943 347788999999999999999655 7999999999999999998877 55689999999999999999999
Q ss_pred EEECCCeEEEEECCCCe--EEEEEecCCCC--eEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCC-CCeEE
Q psy8748 1841 TGSVDKSCKLWDFREKK--CVQTFFGHEAD--VNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN-SGFTS 1915 (2004)
Q Consensus 1841 SGS~DGsIrIWDlrs~k--~I~tl~~h~s~--ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~-s~Its 1915 (2004)
+++.||.|++||+.++. ++..+.++... +++++|+|++.++++++.|+.+++||+..+.....+..+... ..+.+
T Consensus 305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~ 384 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFS 384 (456)
T ss_pred EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEec
Confidence 99999999999999998 56677666555 999999999999999999999999999999998888655443 24455
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC-CCCeEEEEEcCCCCEEEEEE--CCCeEEEEECC
Q psy8748 1916 CAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH-ENRVTSISLSPNGMALVTSS--WDQFVKVWQES 1982 (2004)
Q Consensus 1916 LafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH-s~~VtsLaFSPDg~~LaSgS--~DGtIrIWdls 1982 (2004)
...++.|.++++|+.|+.|++||..++..+..+.+| ...+..+++++...++++++ .|+.|++|..+
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 566789999999999999999999999999999999 89999999999999999998 79999999865
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-29 Score=288.97 Aligned_cols=282 Identities=23% Similarity=0.406 Sum_probs=245.6
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
-+-+|..|.|.|+|+.|.+ |+..|.+.+|+..+ ..|
T Consensus 95 vkc~V~~v~WtPeGRRLlt-gs~SGEFtLWNg~~--------------------------------fnF----------- 130 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLT-GSQSGEFTLWNGTS--------------------------------FNF----------- 130 (464)
T ss_pred cccceeeEEEcCCCceeEe-ecccccEEEecCce--------------------------------eeH-----------
Confidence 4446999999999999999 99999999999755 011
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCC
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLD 1713 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~D 1713 (2004)
...++.|..+|+++.|+++|.++++|+.+
T Consensus 131 ---------------------------------------------------EtilQaHDs~Vr~m~ws~~g~wmiSgD~g 159 (464)
T KOG0284|consen 131 ---------------------------------------------------ETILQAHDSPVRTMKWSHNGTWMISGDKG 159 (464)
T ss_pred ---------------------------------------------------HHHhhhhcccceeEEEccCCCEEEEcCCC
Confidence 11345699999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeeC-CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC
Q psy8748 1714 GKLIIWDTWTGNKTQVIPL-RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID 1792 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd 1792 (2004)
|.|++|+..-. .+..+.. |...|++++|+|+...|++++.||+|+|||.... +..+.+.+|.-.+.++.|++
T Consensus 160 G~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~------kee~vL~GHgwdVksvdWHP 232 (464)
T KOG0284|consen 160 GMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP------KEERVLRGHGWDVKSVDWHP 232 (464)
T ss_pred ceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC------chhheeccCCCCcceeccCC
Confidence 99999996443 3444444 5589999999999999999999999999999754 33455689999999999996
Q ss_pred C-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEE
Q psy8748 1793 D-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNS 1871 (2004)
Q Consensus 1793 d-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~Its 1871 (2004)
. +.+++|+.|..|++||.+++.++.. ..+|+..|..+.|++++++|++++.|..++++|+++.+.+.++++|+..+++
T Consensus 233 ~kgLiasgskDnlVKlWDprSg~cl~t-lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 233 TKGLIASGSKDNLVKLWDPRSGSCLAT-LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS 311 (464)
T ss_pred ccceeEEccCCceeEeecCCCcchhhh-hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee
Confidence 5 5688999999999999999999854 4689999999999999999999999999999999988889999999999999
Q ss_pred EEEeC-CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1872 VCFHP-SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1872 IafSP-dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
+.|+| ...+|.+|+.||.|..|.+...+.+..+ ...|...|.+++|+|-|.+|++|+.|.++++|.-
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i-~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI-PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eccccccccceeeccCCCceEEEeccccccccCC-CcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99999 5678999999999999999855555444 4678899999999999999999999999999975
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=282.33 Aligned_cols=296 Identities=23% Similarity=0.369 Sum_probs=253.9
Q ss_pred ccccccccccceeEEEEeCCCC-EEEEEeCCCeEEEEECCCC--c--eEEEee----------CCCCceEEEEEecCCCE
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTG--N--KTQVIP----------LRSAWVMSVAFAQSGNF 1748 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tg--k--~l~ti~----------~Ht~~ItsLafSPdg~~ 1748 (2004)
..+.+. |+.+|.+.+|+|-.. .+++|+.|-..++|++... . ....++ ..+..|++++|+.+|..
T Consensus 171 ~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 171 KAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred ceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 344555 999999999999666 8999999999999998741 1 111111 12356999999999999
Q ss_pred EEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCe
Q psy8748 1749 VACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDV 1827 (2004)
Q Consensus 1749 LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~I 1827 (2004)
|++|+.||.+++|+... .....+..|.++|.++.|. .++++++++.||++.+||..++.....+ .-|..+-
T Consensus 250 LatG~~~G~~riw~~~G-------~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~ 321 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKDG-------NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPA 321 (524)
T ss_pred EEEeecCcEEEEEecCc-------hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee-eeccCCc
Confidence 99999999999999854 5567788899999999999 5668999999999999999999877444 4566665
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC
Q psy8748 1828 VSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP 1907 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~ 1907 (2004)
..+.|-. ...|++.+.||.|+++.+....++.++.+|.++|.++.|.|.|..|++++.|++++||++........+ .
T Consensus 322 lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l--~ 398 (524)
T KOG0273|consen 322 LDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL--Q 398 (524)
T ss_pred cceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh--h
Confidence 6788864 456899999999999999999999999999999999999999999999999999999999887777666 4
Q ss_pred CCCCCeEEEEEcCCC---------CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q psy8748 1908 NKNSGFTSCAVSSSG---------RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKV 1978 (2004)
Q Consensus 1908 ~~~s~ItsLafSPdG---------~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrI 1978 (2004)
.|...|..+.|+|.| ..+++++.|++|++||+..+.++..+..|..+|.+++|+|+|+++|+|+.||.|.+
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI 478 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEe
Confidence 666789999999964 46899999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEE
Q psy8748 1979 WQESNTIVWKVLK 1991 (2004)
Q Consensus 1979 Wdlstg~l~k~Ik 1991 (2004)
|+...++.++..+
T Consensus 479 ws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 479 WSTKTGKLVKSYQ 491 (524)
T ss_pred ccccchheeEeec
Confidence 9999986655443
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-29 Score=294.10 Aligned_cols=290 Identities=21% Similarity=0.430 Sum_probs=249.5
Q ss_pred cccccccccccceeEEEEeC-CCCEEEEEeCCCeEEEEECCC-CceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1683 MPKKSLKGHINKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWT-GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~T-gk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
..++.+.||+.+|+++.|.| .+.+|++||.|+.|+||++.. +++++++.+|..+|.+++|+++|..+++++.|+.+++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 34568999999999999999 888999999999999999887 8999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCE
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQY 1838 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~ 1838 (2004)
||++++. +... ......+.|+.|.+++ .+++|+.|+.|+.||+++++.+.. ...|-+.|..+.|-++|++
T Consensus 285 wDtETG~------~~~~-f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe-Yd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 285 WDTETGQ------VLSR-FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE-YDRHLGAILDITFVDEGRR 356 (503)
T ss_pred eccccce------EEEE-EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH-HHhhhhheeeeEEccCCce
Confidence 9999764 2222 2335667888888554 699999999999999999997744 4788999999999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce---eEEEcCCCCCCCeE
Q psy8748 1839 FVTGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ---IATYLPPNKNSGFT 1914 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlrs~k~I~tl~-~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~---i~t~~~~~~~s~It 1914 (2004)
+++.+.|++++||+.+.+..++... .+.....|+..+|+++++++-+.|+.|.+|.+...-. ...+..+...+.-.
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 9999999999999999877665443 2334577899999999999999999999998753222 22333333345567
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEE
Q psy8748 1915 SCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPN-GMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1915 sLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPD-g~~LaSgS~DGtIrIWd 1980 (2004)
.+.|||||++|++|+.||.+.+||.++.+.+..+++|.+.+..+.|+|. ...+|+||.||.|++|+
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 8999999999999999999999999999999999999999999999995 45799999999999996
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-28 Score=299.22 Aligned_cols=249 Identities=30% Similarity=0.553 Sum_probs=227.6
Q ss_pred CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC-------------------------CCCcceEEEEEecCccceee
Q psy8748 1733 RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD-------------------------STGAAKVIRELLGYEGFLSS 1787 (2004)
Q Consensus 1733 Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~-------------------------~~~~~k~i~sl~gh~~~Vss 1787 (2004)
....++|..|++++..+|.|..|..|++|.+...+ ........+.+.+|.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 34568999999999999999999999999987411 01122345668999999999
Q ss_pred eEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC
Q psy8748 1788 CRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE 1866 (2004)
Q Consensus 1788 vafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~ 1866 (2004)
+.|++++ .+++++.|+++++|.+.+..++... .+|..+|+++.|+|-|-+|++++.|++.++|......+.+.+.+|-
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghl 535 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHL 535 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccc
Confidence 9999765 5888999999999999999888544 6999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q psy8748 1867 ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNG 1946 (2004)
Q Consensus 1867 s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~ 1946 (2004)
+.|.|+.|+|++.|+++||.|.+|++||+.+|..++.| .+|..+|++++|+|+|++|++|+.||.|.+||+.++..+.
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF--~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF--TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK 613 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe--cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh
Confidence 99999999999999999999999999999999999999 4688999999999999999999999999999999999999
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1947 VLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1947 tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
.+.+|++.|.++.|+.+|..||+||.|.+|++||+...
T Consensus 614 ~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 614 QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999999999999999999999998764
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-27 Score=294.84 Aligned_cols=285 Identities=27% Similarity=0.448 Sum_probs=247.6
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
|...|+++.|||+|++|++ ++.|+.+++|+... .+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~-~~~~~~i~~~~~~~-------------~~~------------------------------ 193 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAA-ASSDGLIRIWKLEG-------------IKS------------------------------ 193 (456)
T ss_pred ccCceEEEEEcCCCCeEEE-ccCCCcEEEeeccc-------------ccc------------------------------
Confidence 4778999999999999999 99999999999855 000
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCC
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLD 1713 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~D 1713 (2004)
...+.+.+|...|++++|+|+++++++|+.|
T Consensus 194 -------------------------------------------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D 224 (456)
T KOG0266|consen 194 -------------------------------------------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDD 224 (456)
T ss_pred -------------------------------------------------hhhccccccccceeeeEECCCCcEEEEecCC
Confidence 0123446799999999999999999999999
Q ss_pred CeEEEEEC-CCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC
Q psy8748 1714 GKLIIWDT-WTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID 1792 (2004)
Q Consensus 1714 GtIrVWDl-~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd 1792 (2004)
++|+|||+ ..+..++++.+|...|++++|+|+++.+++|+.|++|++||+++ .+....+.+|.+.+++++|..
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~------~~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT------GECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC------CeEEEeeeccCCceEEEEECC
Confidence 99999999 55689999999999999999999999999999999999999985 478889999999999999995
Q ss_pred -CCcEEEeecCCeEEEEECCCCce--eEEeeccccC--CeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC
Q psy8748 1793 -DTTLLTGSGDMKIVTWNLETGQR--IHEVAQAHIG--DVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA 1867 (2004)
Q Consensus 1793 -d~~LlSgS~DGtI~IWDl~tg~~--i~~il~~h~~--~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s 1867 (2004)
+..+++++.||.|++||..++.. .... .++.. .+++++|+|++.++++++.|+.+++||++.+.....+.+|..
T Consensus 299 d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLETGSKLCLKLL-SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred CCCEEEEcCCCccEEEEECCCCceeeeecc-cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 45688888899999999999983 3333 33333 599999999999999999999999999999999999998887
Q ss_pred C---eEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEEC
Q psy8748 1868 D---VNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS--DDNNVHVWDL 1939 (2004)
Q Consensus 1868 ~---ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS--sDGsIrIWDL 1939 (2004)
. +.+...++.+.++++|+.|+.|.+||+.++..+..+..+. ...+..+.+++..+++++++ .|+.+++|..
T Consensus 378 ~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 378 LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred cceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 5 3344557789999999999999999999988777774432 67889999999999999998 6899999975
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-26 Score=307.58 Aligned_cols=240 Identities=18% Similarity=0.292 Sum_probs=202.8
Q ss_pred ccceeEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEec-CCCEEEEeecCCeEEEEEcCCCCCC
Q psy8748 1692 INKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQ-SGNFVACGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1692 t~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSP-dg~~LaSGS~DGtIrVWDl~t~~~~ 1769 (2004)
...|.+++|++ ++.+|++++.||+|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||.|++||+..+.
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-- 609 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-- 609 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--
Confidence 35789999987 578999999999999999999999999999999999999997 78999999999999999997642
Q ss_pred CcceEEEEEecCccceeeeEEe--CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCe
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGs 1847 (2004)
....+.. ...+.++.|. ++..+++|+.||.|++||++++........+|...|.++.|. ++.++++++.||.
T Consensus 610 ----~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ 683 (793)
T PLN00181 610 ----SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT 683 (793)
T ss_pred ----EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE
Confidence 3333433 3567888885 356799999999999999988764334556899999999997 7889999999999
Q ss_pred EEEEECCC------CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC-----------CCCC
Q psy8748 1848 CKLWDFRE------KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP-----------PNKN 1910 (2004)
Q Consensus 1848 IrIWDlrs------~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~-----------~~~~ 1910 (2004)
|++||++. ...+..+.+|...+.+++|++++.+|++|+.||.|++|+.........+.. ..+.
T Consensus 684 ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 763 (793)
T PLN00181 684 LKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDAS 763 (793)
T ss_pred EEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCC
Confidence 99999974 356788899999999999999999999999999999999876654433211 2234
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1911 SGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
..|.+++|++++.++++|+.||.|+||++
T Consensus 764 ~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 764 QFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 56899999999999999999999999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=306.71 Aligned_cols=283 Identities=18% Similarity=0.294 Sum_probs=235.7
Q ss_pred cccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC----c----eEEEeeCCCCceEEEEEec-CCCEEEEeecCCe
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG----N----KTQVIPLRSAWVMSVAFAQ-SGNFVACGGMDNM 1757 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg----k----~l~ti~~Ht~~ItsLafSP-dg~~LaSGS~DGt 1757 (2004)
.+.+|.+.|++++|+|+|+++|+|+.||.|+|||..+. . ....+. +...|.+++|++ ++.++++++.||.
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 35669999999999999999999999999999997542 1 112223 346799999987 4789999999999
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEEC-C
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLS-P 1834 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafS-P 1834 (2004)
|++||+.++ .....+.+|.+.|.++.|++ +..+++|+.||.|++||+.++..+..+. +...+.++.|+ +
T Consensus 557 v~lWd~~~~------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~ 628 (793)
T PLN00181 557 VQVWDVARS------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPSE 628 (793)
T ss_pred EEEEECCCC------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeCC
Confidence 999999753 45677788999999999984 4679999999999999999988775552 34679999995 5
Q ss_pred CCCEEEEEECCCeEEEEECCCCe-EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCC------ceeEEEcCC
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFREKK-CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRAD------QQIATYLPP 1907 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs~k-~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtg------k~i~t~~~~ 1907 (2004)
+|.++++|+.||.|++||+++.. .+..+.+|...|.++.|. ++.++++++.||+|++||++.+ +.+..+ .
T Consensus 629 ~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~--~ 705 (793)
T PLN00181 629 SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF--M 705 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE--c
Confidence 79999999999999999998765 467778999999999997 6789999999999999999753 344555 3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-------------ccCCCCeEEEEEcCCCCEEEEEECCC
Q psy8748 1908 NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVL-------------SGHENRVTSISLSPNGMALVTSSWDQ 1974 (2004)
Q Consensus 1908 ~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL-------------~gHs~~VtsLaFSPDg~~LaSgS~DG 1974 (2004)
+|...+.+++|++++.+|++|+.||.|++|+.....+...+ ..|...|.+++|++++..|++|+.||
T Consensus 706 gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 706 GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence 56677899999999999999999999999998665443222 23456799999999999999999999
Q ss_pred eEEEEEC
Q psy8748 1975 FVKVWQE 1981 (2004)
Q Consensus 1975 tIrIWdl 1981 (2004)
.|+||++
T Consensus 786 ~I~i~~~ 792 (793)
T PLN00181 786 NIKILEM 792 (793)
T ss_pred cEEEEec
Confidence 9999986
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=271.04 Aligned_cols=287 Identities=21% Similarity=0.340 Sum_probs=255.5
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccC
Q psy8748 1549 NAPEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMK 1628 (2004)
Q Consensus 1549 ~a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~s 1628 (2004)
.+..+|-+.|+||++.|-.+|++| |+.|++|+|||+.+ +.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~t-gs~DrtikIwDlat-------------g~-------------------------- 184 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFAT-GSADRTIKIWDLAT-------------GQ-------------------------- 184 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEe-cCCCceeEEEEccc-------------Ce--------------------------
Confidence 345569999999999999999999 99999999999988 22
Q ss_pred CCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEE
Q psy8748 1629 PTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCV 1708 (2004)
Q Consensus 1629 pdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LA 1708 (2004)
.+.+|.||...|..+++|+-..|++
T Consensus 185 -------------------------------------------------------LkltltGhi~~vr~vavS~rHpYlF 209 (460)
T KOG0285|consen 185 -------------------------------------------------------LKLTLTGHIETVRGVAVSKRHPYLF 209 (460)
T ss_pred -------------------------------------------------------EEEeecchhheeeeeeecccCceEE
Confidence 1345677999999999999999999
Q ss_pred EEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeee
Q psy8748 1709 SGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSC 1788 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssv 1788 (2004)
+++.|+.|+.||++..+.++.+.+|-..|+|++.+|.-+.|++|+.|..++|||+++. ..+..+.||...|..+
T Consensus 210 s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr------~~V~~l~GH~~~V~~V 283 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR------ASVHVLSGHTNPVASV 283 (460)
T ss_pred EecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc------ceEEEecCCCCcceeE
Confidence 9999999999999999999999999999999999999999999999999999999864 5677889999999999
Q ss_pred EEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC
Q psy8748 1789 RFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA 1867 (2004)
Q Consensus 1789 afsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s 1867 (2004)
.+.+ +..+++|+.|++|++||+..|+.... ...|...+.+++.+|....|++++.| .|+-|++..+..+..+.+|..
T Consensus 284 ~~~~~dpqvit~S~D~tvrlWDl~agkt~~t-lt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ 361 (460)
T KOG0285|consen 284 MCQPTDPQVITGSHDSTVRLWDLRAGKTMIT-LTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA 361 (460)
T ss_pred EeecCCCceEEecCCceEEEeeeccCceeEe-eecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc
Confidence 8874 66899999999999999999988744 46889999999999999999999877 699999999999999999999
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEc---CC---CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1868 DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL---PP---NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1868 ~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~---~~---~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
-|++++...|| ++++|+.+|.+.+||.++|....... .+ ....+|.+.+|+..|..|++|..|.+|++|.-
T Consensus 362 iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 362 IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 99999998877 78899999999999999887655441 11 12356899999999999999999999999974
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=284.95 Aligned_cols=386 Identities=20% Similarity=0.266 Sum_probs=307.0
Q ss_pred CCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccc-cCCCCcch
Q psy8748 1556 EQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLM-MKPTSSIN 1634 (2004)
Q Consensus 1556 ~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll-~spdgSid 1634 (2004)
..|+|+.-+|++-.||. |-.||.|+||+..+ ....-++.||..++.. ..|...- .-..|+.+
T Consensus 66 ~evt~l~~~~d~l~lAV-GYaDGsVqif~~~s-------------~~~~~tfngHK~AVt~---l~fd~~G~rlaSGskD 128 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAV-GYADGSVQIFSLES-------------EEILITFNGHKAAVTT---LKFDKIGTRLASGSKD 128 (888)
T ss_pred ceEEEeeccCCcceEEE-EecCceEEeeccCC-------------CceeeeecccccceEE---EEEcccCceEeecCCC
Confidence 47999999999999998 99999999999987 3455566676666654 1110000 00011111
Q ss_pred hhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCCC
Q psy8748 1635 IYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDG 1714 (2004)
Q Consensus 1635 i~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DG 1714 (2004)
..+..|. . +.-.-...|+||.+.|+..-|..+.+++++.|.|+
T Consensus 129 t~IIvwD----------------------------l---------V~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs 171 (888)
T KOG0306|consen 129 TDIIVWD----------------------------L---------VGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDS 171 (888)
T ss_pred ccEEEEE----------------------------e---------ccceeeEEeecchHHHhHHhccCCCeEEEEeccCc
Confidence 2112220 0 01123567999999999999999889999999999
Q ss_pred eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCC--------------------------
Q psy8748 1715 KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS-------------------------- 1768 (2004)
Q Consensus 1715 tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~-------------------------- 1768 (2004)
.|++||+.+..+..+.-.|.+.|.++++++ +.+++++.|+.+++|++.....
T Consensus 172 ~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~ 249 (888)
T KOG0306|consen 172 MIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREIN 249 (888)
T ss_pred eEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeE
Confidence 999999999999999999999999999986 8999999999999999811000
Q ss_pred ---------------------------------------------C----------------------------------
Q psy8748 1769 ---------------------------------------------T---------------------------------- 1769 (2004)
Q Consensus 1769 ---------------------------------------------~---------------------------------- 1769 (2004)
.
T Consensus 250 l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~ 329 (888)
T KOG0306|consen 250 LVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVT 329 (888)
T ss_pred EeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEE
Confidence 0
Q ss_pred ---Ccc-------------------e---------EEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEE
Q psy8748 1770 ---GAA-------------------K---------VIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHE 1818 (2004)
Q Consensus 1770 ---~~~-------------------k---------~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~ 1818 (2004)
... . ....+.+|...|..+++++++.++..+..+.+++|+..+.+++.+
T Consensus 330 ~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRT 409 (888)
T KOG0306|consen 330 PSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRT 409 (888)
T ss_pred ecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEE
Confidence 000 0 002234677778888888888888888899999999999999977
Q ss_pred eeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC-
Q psy8748 1819 VAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA- 1897 (2004)
Q Consensus 1819 il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt- 1897 (2004)
+. .+.+.+..|-|.++++++|...|.+.+||+.+...+.++.+|.+.|+.++.+||+..+++||.|.+|++||..-
T Consensus 410 i~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~ 486 (888)
T KOG0306|consen 410 IT---CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV 486 (888)
T ss_pred ec---cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE
Confidence 73 33789999999999999999999999999999999999999999999999999999999999999999999742
Q ss_pred ----CceeEEEcC-----CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEE
Q psy8748 1898 ----DQQIATYLP-----PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALV 1968 (2004)
Q Consensus 1898 ----gk~i~t~~~-----~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~La 1968 (2004)
+.....+.. -.-...|.|+.+||||+++++|--|++++||-+.+.+..-.+.||.-+|.++.++||++.++
T Consensus 487 ~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkliv 566 (888)
T KOG0306|consen 487 VSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIV 566 (888)
T ss_pred eccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEE
Confidence 111110100 11235689999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1969 TSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1969 SgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
|||.|..|+||-++=|.+ -+.+-+|...|+||
T Consensus 567 TgSADKnVKiWGLdFGDC---HKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFGDC---HKSFFAHDDSVMSV 598 (888)
T ss_pred eccCCCceEEeccccchh---hhhhhcccCceeEE
Confidence 999999999999998854 45566788888775
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-27 Score=270.62 Aligned_cols=289 Identities=25% Similarity=0.363 Sum_probs=258.3
Q ss_pred CCCCCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccc
Q psy8748 1547 PTNAPEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLM 1626 (2004)
Q Consensus 1547 pt~a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll 1626 (2004)
.....++|..+|+.+-|+|+--.+|+ ++.|++|++||..+ +.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~-as~d~tikv~D~~t-------------g~------------------------ 141 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVS-ASEDATIKVFDTET-------------GE------------------------ 141 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEE-ecCCceEEEEEccc-------------hh------------------------
Confidence 34445568889999999999999999 99999999999877 11
Q ss_pred cCCCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCE
Q psy8748 1627 MKPTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRH 1706 (2004)
Q Consensus 1627 ~spdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~ 1706 (2004)
....|+||++.|.+++|+..|++
T Consensus 142 ---------------------------------------------------------~e~~LrGHt~sv~di~~~a~Gk~ 164 (406)
T KOG0295|consen 142 ---------------------------------------------------------LERSLRGHTDSVFDISFDASGKY 164 (406)
T ss_pred ---------------------------------------------------------hhhhhhccccceeEEEEecCccE
Confidence 12357889999999999999999
Q ss_pred EEEEeCCCeEEEEECCC-CceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccce
Q psy8748 1707 CVSGSLDGKLIIWDTWT-GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL 1785 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~T-gk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~V 1785 (2004)
+|+++.|-.+++||..+ .++++...+|...|.+++|-|.|+++++++.|.+|+.|+++++ ..+.++.+|...+
T Consensus 165 l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg------~cv~t~~~h~ewv 238 (406)
T KOG0295|consen 165 LATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG------YCVKTFPGHSEWV 238 (406)
T ss_pred EEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc------eeEEeccCchHhE
Confidence 99999999999999887 5777888899999999999999999999999999999999865 6788999999999
Q ss_pred eeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC---------------CCEEEEEECCCeEE
Q psy8748 1786 SSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD---------------GQYFVTGSVDKSCK 1849 (2004)
Q Consensus 1786 ssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd---------------g~~LaSGS~DGsIr 1849 (2004)
..+....++ .+++++.|.++++|-..++++. ..+..|..+|.|++|.|. +.++.+++.|++|+
T Consensus 239 r~v~v~~DGti~As~s~dqtl~vW~~~t~~~k-~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk 317 (406)
T KOG0295|consen 239 RMVRVNQDGTIIASCSNDQTLRVWVVATKQCK-AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK 317 (406)
T ss_pred EEEEecCCeeEEEecCCCceEEEEEeccchhh-hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence 999988554 5778899999999999998766 445789999999999772 25899999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1850 IWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
+||+.++.++.++.+|...|..++|+|.|+||+++..|+++++||+++++++..+. .|..-++++.|+.+..++++|+
T Consensus 318 ~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--ah~hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 318 IWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--AHEHFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred EEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC--CCcceeEEEecCCCCceEEecc
Confidence 99999999999999999999999999999999999999999999999999998885 4556799999999999999999
Q ss_pred CCCeEEEEEC
Q psy8748 1930 DDNNVHVWDL 1939 (2004)
Q Consensus 1930 sDGsIrIWDL 1939 (2004)
-|.++++|.-
T Consensus 396 Vdqt~KvwEc 405 (406)
T KOG0295|consen 396 VDQTVKVWEC 405 (406)
T ss_pred ccceeeeeec
Confidence 9999999974
|
|
| >COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-28 Score=298.15 Aligned_cols=484 Identities=14% Similarity=0.125 Sum_probs=340.5
Q ss_pred chhHHHHHHHhhccCCCCc-chhhhHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHH
Q psy8748 874 QPMFLCALARALESNPGLR-ASHQHWTTMLTCALPYLGKSLTTVVKVAIKALCANVDYLAEVYSVQNENKLKTNIPADYA 952 (2004)
Q Consensus 874 ~~~fl~~ll~gL~~~~~~~-~~~~~W~~~l~~~LP~~~~sl~~~v~~~v~qlC~~i~~l~~~~~~~~~~~~~~~~p~~~~ 952 (2004)
-.|++.-++.+..-.-.+. ....+.+-++.+.+-|++.++|+++.+++..+-...+.+-..+. .....-.|-+..
T Consensus 906 h~~lv~flv~~~~ndg~sp~~~I~k~l~lL~~~~~l~~~sifr~~~~~~~S~i~~v~~~~l~~p----~~v~~yapv~~~ 981 (1618)
T COG5221 906 HRMLVHFLVNRKENDGRSPDMEIIKILELLVRGGILSGSSIFRVMNSVDLSRIVDVAKENLDDP----AIVLGYAPVIKH 981 (1618)
T ss_pred HHHHHHHHhhhhhccCCCcchHHHHHHHHHHhccchhcccHHHHHhhhHHHHHHHHHHHhccCc----ccccCchhHHHH
Confidence 3577777777665431222 46778999999999999999999999999987555554333222 112233677888
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccccccccccccCCC--CCCccccceeeeecCCCC--Ccccccc
Q psy8748 953 ITQMEALTILCHYCLLDSAQPFNQPLHGNVMYHVSEKYNKSLKDISSKANN--VGKSGKKIVAVTSLSSGD--NQCVTEK 1028 (2004)
Q Consensus 953 itlLegl~~i~H~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~f~n~v~~~~~s~~~--~~~~~~~ 1028 (2004)
+.=|++|--+||--|+..+.- +. -++.+ ..++.+|.|++||.|+.- ....+.|
T Consensus 982 ~g~l~~l~el~s~~l~~~~y~-~~----------------------f~~snl~~~~~i~~V~SnVfss~sSneeskiq~r 1038 (1618)
T COG5221 982 SGNLAALQELCSILLSQCFYY-HS----------------------FLESNLSLTRLIRKVMSNVFSSLSSNEESKIQNR 1038 (1618)
T ss_pred hccHHHHHHHHHHHHHhhhcc-cC----------------------chhccccHHHHHHHHHHHhhhccccCcccchhhh
Confidence 888888888899877764332 11 11222 348999999999998851 1112222
Q ss_pred hhhhhhchhhhHHHHhh---hHhH------------Hh----hhhh---------------hhcccCcccccc--chhhh
Q psy8748 1029 KRVNQNIYHDGIDTYTT---YSKN------------LS----LLQN---------------ISVFVNPFSTDN--STSMM 1072 (2004)
Q Consensus 1029 ~~vaR~~L~~i~~~~~~---w~~~------------i~----~~~~---------------il~~l~p~~~~~--~~~~l 1072 (2004)
+.- =-..-+.++++-+ |.-. +. .|.+ |++.+--|..|. .....
T Consensus 1039 d~~-L~~~~~ai~~~ll~~~wh~i~~~~~Dkssk~~~nnSy~fk~~s~~llee~~~~Eple~~e~l~~i~~~n~~t~~~~ 1117 (1618)
T COG5221 1039 DFG-LMIVSEAITSMLLKRGWHGILPAFIDKSSKFIFNNSYFFKNQSVDLLEEERGREPLEIAEMLQGIEHHNALTLSSS 1117 (1618)
T ss_pred HHH-HHHHHHHHHHHHHHHhhccccchhcchhHHHHhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccceeEEee
Confidence 200 0003334444444 5411 00 0111 111121111111 11122
Q ss_pred hccccccccccccCCCCccccccccCCcchHHHHH---------HHHHcCCCCCCCC--------------CcccHHHHH
Q psy8748 1073 NNDFDDYFVEEKKDGTSTTSTELIAMPIDTLVQTI---------HQVIRSTTINMEP--------------SMRMEVSVL 1129 (2004)
Q Consensus 1073 ~al~~~~~W~~~~~~~~~~s~~i~~l~~dti~~~~---------~~v~~~~~~~~~~--------------~~~~e~~Ll 1129 (2004)
+-+ ++..|.. ++++.+ .+-|+++++++-- +-..-..+.
T Consensus 1118 ~~l------~~~~p~~-------------~V~~l~~~~~~r~~~~as~~~~~~~~~~~t~l~~~~c~p~~~sr~~gE~i~ 1178 (1618)
T COG5221 1118 TCL------QEEAPRT-------------SVRILALKLSTRKELSASLFRKVPIKFVETILEGSPCIPFLMSRDFGEQIY 1178 (1618)
T ss_pred eee------cCCCCce-------------eHHHHHHHHHHhhhhhhhhccCCCccceeeeeccCccchHHHHHhhhhHHH
Confidence 222 5666777 777764 3445556565422 233345899
Q ss_pred HHHHHHHhhCCcchHHhHHHHHHHHHHhhcCCCC------chhHHHHHHHHHHhhcCCCCCcchhhhhhHHHHHHHHHHH
Q psy8748 1130 ELLLHYIQLTPSTALAESWPSLLLLLREGPSLSP------PSQFILMAILSQFVHRTSAPLPDRRDQKDLQDITAKLIES 1203 (2004)
Q Consensus 1130 ~FL~~Y~~sL~~~~l~eiW~~ll~flKdvlsn~~------p~~l~~l~IL~ekv~~t~f~~EdKk~rKELqD~~~KlL~a 1203 (2004)
.|+..|++...+.++. +.++++.++||+..|.+ -.++.+.+..+-|...+.| ++|++.++|++|.+.+++..
T Consensus 1179 ~~i~n~v~~~~~s~~~-F~~~ll~~~rEva~n~N~y~d~~g~~lk~v~~~aGk~s~p~f-t~~fl~~~~~~~~~f~~~~s 1256 (1618)
T COG5221 1179 ISIMNLVSNNGTSVFK-FLSTLLQVMREVAENMNVYNDSKGLLLKIVSYRAGKDSAPLF-TLNFLLGLDLGESDFALVQS 1256 (1618)
T ss_pred HHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHhhcCCCcccch-hHHHHhhhhhhhhHHHHHHH
Confidence 9999999999999988 99999999999988876 4556677888899999998 99999999999999999998
Q ss_pred HHhccccccccchhhhcccccccccccCCCCCCCcccccccccccccccccchhhHHHHHHHHHhhhhcccccCCCchhH
Q psy8748 1204 CAGIAGACLEQTTWLRRNLAVKEDELSNSSSDKDSDKCKFKHITVGTTVAQHSVQALSVLAQLLAPLLDVTYGSQEKERV 1283 (2004)
Q Consensus 1204 ~~~~~~~~leq~~w~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~L~~l~~~l~~l~~~~~E~DRv 1283 (2004)
++-. .+--.++.+ ++..... .....++.++-..-+.||+
T Consensus 1257 ~~~n------s~~l~~k~l----D~~~~~~-------------------------------f~~~~v~~Iv~~~~~edKf 1295 (1618)
T COG5221 1257 VILN------SVYLLQKKL----DLKTRNG-------------------------------FKDYEVEVIVLERLTEDKF 1295 (1618)
T ss_pred HHHh------HHHHHHhcC----Chhhhcc-------------------------------chhhhhhHHHHhhhchhHH
Confidence 8852 111112221 1110000 0011111111122346999
Q ss_pred HHHHHhHhhhhh-cccccc-cccccchhhHHHHHHHHhhhcCccccchHHHHHHhcCCCcccccChhchhhHHHHHHHHH
Q psy8748 1284 NTLLTTLMYNVI-PYLKNH-SQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLM 1361 (2004)
Q Consensus 1284 ~~~ls~I~~nvi-P~lK~k-~~~n~~~~~~~~~LL~sLS~~~~~~KaWKk~V~DlFnD~~FF~~~~~~l~~W~~II~~w~ 1361 (2004)
++.+.+|+..++ |++|.+ ++..++.+.+. |+..+|+.+..+|.||+++.|+|||.+||.-+.+.+.+-.+.+....
T Consensus 1296 ~~t~~siVn~~iTp~Ik~~~~~~~l~~y~l~--LlavlS~~g~~vKsWr~~f~EiFnd~~lf~~gsDQl~kks~~~~~v~ 1373 (1618)
T COG5221 1296 QRTVLSIVNSLITPIIKLVNSSLGLKNYGLN--LLAVLSERGLEVKSWRKEFVEIFNDLDLFIYGSDQLHKKSSLMRKVV 1373 (1618)
T ss_pred HHHHHHHHHHHhhhheecccccccccchhHH--HHHHHHhcchhHHHHHHHHHHHhccCceEEeccHHHhhhchheeehh
Confidence 999999999988 999999 58899999888 99999999999999999999999999999999888644445555557
Q ss_pred hcCCCcHHHHHhhcccCCCcccccccChHHHHHHHHHHHHHHHhhhhccCCchhhccChhHHHHHHHHHhhcCcccccch
Q psy8748 1362 SQEPATFRDLMTRVSLSQSNSLSLFSNKEQEYEQRAQLLKKLAFVILCSETDQFHKHIPEITGLTEGALIESCAGIAGAC 1441 (2004)
Q Consensus 1362 ~~DK~~f~DLL~Rit~~~Sss~~iFtn~e~E~e~Ra~~LKRLAfLIlsse~D~yl~~Lp~I~ekl~e~L~~~~~~l~~~~ 1441 (2004)
-.|+.++.||+.|+... -.++|.++++|++.|++||+||+|++|++|.|+|+.++|.++|+|..++.+.+.+++..|
T Consensus 1374 ~e~~SilnDLi~~~dsg---liTff~s~ds~~~~k~~nl~rIsyl~~ssP~d~fl~~~~~LI~~I~~l~~sp~~klkk~~ 1450 (1618)
T COG5221 1374 VEDPSILNDLIVRLDSG---LITFFVSQDSDANNKTLNLKRISYLIFSSPYDYFLGFSLKLIEKIATLMNSPSSKLKKEV 1450 (1618)
T ss_pred ccChHHHHHHHHHhcCC---ceEEEecchhhhhhhhhhhhheeEEEEeCchHhhhhccHHHHHHHHHHhcCcchhhhhHH
Confidence 77888899999999852 334789999999999999999999999999999999999999999999999999999988
Q ss_pred hhhHHHHHHhhcccc
Q psy8748 1442 LEQTTWLRRNLAVKE 1456 (2004)
Q Consensus 1442 ~~~~~~~~~~l~~~~ 1456 (2004)
+ +|.|||.+|-
T Consensus 1451 f----ll~r~L~Lr~ 1461 (1618)
T COG5221 1451 F----LLSRMLILRI 1461 (1618)
T ss_pred H----HHHHHHHHHh
Confidence 6 7999999985
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=277.76 Aligned_cols=280 Identities=22% Similarity=0.344 Sum_probs=248.0
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
++..|.||+|||.-.|+.. +-+.|.|.||+.++ ....+.
T Consensus 12 rSdRVKsVd~HPtePw~la-~LynG~V~IWnyet-------------qtmVks--------------------------- 50 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILA-ALYNGDVQIWNYET-------------QTMVKS--------------------------- 50 (794)
T ss_pred cCCceeeeecCCCCceEEE-eeecCeeEEEeccc-------------ceeeee---------------------------
Confidence 6678999999999999999 99999999999988 111111
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCC
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLD 1713 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~D 1713 (2004)
+.-..-+|++..|-...+++++|++|
T Consensus 51 ------------------------------------------------------feV~~~PvRa~kfiaRknWiv~GsDD 76 (794)
T KOG0276|consen 51 ------------------------------------------------------FEVSEVPVRAAKFIARKNWIVTGSDD 76 (794)
T ss_pred ------------------------------------------------------eeecccchhhheeeeccceEEEecCC
Confidence 11123467788888889999999999
Q ss_pred CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID- 1792 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd- 1792 (2004)
+.|+||+..+++.++.+..|.+.|++++.+|...++++++.|-.|++|+.+. ...+.+.+.||...|.+++|.+
T Consensus 77 ~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-----~wa~~qtfeGH~HyVMqv~fnPk 151 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-----EWACEQTFEGHEHYVMQVAFNPK 151 (794)
T ss_pred ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC-----ceeeeeEEcCcceEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999986 5688899999999999999985
Q ss_pred -CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC--CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCe
Q psy8748 1793 -DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD--GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADV 1869 (2004)
Q Consensus 1793 -d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd--g~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~I 1869 (2004)
.+.+++++-|++|++|.+.+..+..+. .+|...|.|+.+-+. ..++++|++|..|+|||..+..+++++.+|...|
T Consensus 152 D~ntFaS~sLDrTVKVWslgs~~~nfTl-~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv 230 (794)
T KOG0276|consen 152 DPNTFASASLDRTVKVWSLGSPHPNFTL-EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV 230 (794)
T ss_pred CccceeeeeccccEEEEEcCCCCCceee-eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence 467999999999999999988877554 699999999999874 4699999999999999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy8748 1870 NSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHV 1936 (2004)
Q Consensus 1870 tsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrI 1936 (2004)
..++|+|.-..+++|++||+++||+-.+.+...++... ...+.|++-.+.++.+++|.++|.|.+
T Consensus 231 s~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 231 SFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred eEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999999999999888777666433 367999999998889999988887654
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=280.15 Aligned_cols=286 Identities=20% Similarity=0.322 Sum_probs=264.3
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
.+.+..|+.+|.++.|+|...+++++-.+|.|.|||.++...++.+....-+|++..|-...+++++|+.|..|+||+.+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC-CCCEEEEE
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP-DGQYFVTG 1842 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP-dg~~LaSG 1842 (2004)
+. ..+..+..|.+.+.+++.++. .+++++++|-.|++||.+.+-.....+.+|...|.+++|+| |.+.|+++
T Consensus 86 t~------ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 86 TG------EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred cc------eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 64 678889999999999999865 57999999999999999998888888999999999999999 67799999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC--CCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPS--GLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPd--g~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP 1920 (2004)
+-|++|++|.+.+..+..++.+|...|+|+++-+. ..++++|+.|.+|+|||.++..++.++ .+|...|..+.|+|
T Consensus 160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL--eGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL--EGHTNNVSFVFFHP 237 (794)
T ss_pred eccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh--hcccccceEEEecC
Confidence 99999999999999999999999999999999884 468999999999999999999999988 46667899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q psy8748 1921 SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKV 1978 (2004)
Q Consensus 1921 dG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrI 1978 (2004)
.-.++++|++||+++||+..+.+...++.-.-++|++++-.+.+..++.|.+.|.|.+
T Consensus 238 ~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999999999999999888888899999999998888888887776543
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=253.60 Aligned_cols=291 Identities=23% Similarity=0.348 Sum_probs=256.1
Q ss_pred cccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1681 KLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1681 k~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
+....+.|.+|.++|+.+.|+-||+|.+++|.|.+|++|+...|..++++.+|...|..++.+.|+..+++|+.|..|.+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCce-eEEeeccccCCeEEEEECCCCCE
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQR-IHEVAQAHIGDVVSISLSPDGQY 1838 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~-i~~il~~h~~~ItsLafSPdg~~ 1838 (2004)
||++++ +..+.+.+|.+.|..+.|..+. .+++|+.|..+++||-++... ..+++......|.++... +..
T Consensus 86 wDV~TG------kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he 157 (307)
T KOG0316|consen 86 WDVNTG------KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE 157 (307)
T ss_pred EEcccC------eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE
Confidence 999865 7889999999999999999654 588899999999999986542 224566777889999886 678
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEE
Q psy8748 1839 FVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAV 1918 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLaf 1918 (2004)
+++|+.||+++.||++.|+....+. ..+|+|++|+++++..++++.|+++++.|-.+|+.+..+..+.....-..+++
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence 9999999999999999998766554 46899999999999999999999999999999999988876555555567888
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCC-eEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-VTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1919 SPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~-VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
.....++++|++||.|++||+.....+..+..|... |++++++|....+++++. +.+..|.-.
T Consensus 236 ~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~~ 299 (307)
T KOG0316|consen 236 NQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQE 299 (307)
T ss_pred cccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceeceeeh
Confidence 888899999999999999999999999999988888 899999998888888774 456666543
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=260.45 Aligned_cols=290 Identities=21% Similarity=0.380 Sum_probs=245.2
Q ss_pred CCCCCCCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccc
Q psy8748 1545 DIPTNAPEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRD 1624 (2004)
Q Consensus 1545 ~~pt~a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ 1624 (2004)
..|.....+|++.|..+.|+|+|.++|| |+.|+.|.+|++.. + + .
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aS-gG~Dr~I~LWnv~g--------------------d-------c--e----- 81 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFAS-GGSDRAIVLWNVYG--------------------D-------C--E----- 81 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEee-cCCcceEEEEeccc--------------------c-------c--c-----
Confidence 3455566779999999999999999999 99999999999866 0 0 0
Q ss_pred cccCCCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCC
Q psy8748 1625 LMMKPTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDS 1704 (2004)
Q Consensus 1625 ll~spdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG 1704 (2004)
-..+++||.++|..+.|.+|+
T Consensus 82 -----------------------------------------------------------N~~~lkgHsgAVM~l~~~~d~ 102 (338)
T KOG0265|consen 82 -----------------------------------------------------------NFWVLKGHSGAVMELHGMRDG 102 (338)
T ss_pred -----------------------------------------------------------ceeeeccccceeEeeeeccCC
Confidence 022456899999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcc
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG 1783 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~ 1783 (2004)
..++++|.|++|+.||.++|+..+.+++|...|.++.-+.-|. .+.+|+.||++++||++..+.... .....
T Consensus 103 s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t-------~~~ky 175 (338)
T KOG0265|consen 103 SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT-------FENKY 175 (338)
T ss_pred CEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc-------cccce
Confidence 9999999999999999999999999999999999998655554 667888999999999986542221 12244
Q ss_pred ceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCC----CeE
Q psy8748 1784 FLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE----KKC 1858 (2004)
Q Consensus 1784 ~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs----~k~ 1858 (2004)
.++++.|.+ ...+++|+-|+.|++||++.+... .+..+|.+.|+.+..+++|.++.+-+.|.++++||++. ..+
T Consensus 176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~-~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL-YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred eEEEEEecccccceeeccccCceeeeccccCcce-EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence 577888885 457999999999999999988877 45689999999999999999999999999999999984 345
Q ss_pred EEEEecCCC----CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q psy8748 1859 VQTFFGHEA----DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNV 1934 (2004)
Q Consensus 1859 I~tl~~h~s----~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsI 1934 (2004)
+..+.+|.. ....++|+|+++.+.+|+.|..+++||......+..+ ++|.+.|.+++|+|...+|.+++.|.+|
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl--pGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL--PGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc--CCcceeEEEeeecCCCcEEEEeccCcee
Confidence 777766543 3457899999999999999999999999877777666 7888999999999999999999999999
Q ss_pred EEEE
Q psy8748 1935 HVWD 1938 (2004)
Q Consensus 1935 rIWD 1938 (2004)
++=.
T Consensus 333 ~lge 336 (338)
T KOG0265|consen 333 YLGE 336 (338)
T ss_pred Eeec
Confidence 8743
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=251.59 Aligned_cols=289 Identities=21% Similarity=0.305 Sum_probs=238.4
Q ss_pred CCCCCCCeEEEEEccC-CCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1551 PEPCKEQRNAVSFHAC-STLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPd-Gk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
..+|++.|..++|+|- |..||| |+.|..||||+... +.. |
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAs-cg~Dk~vriw~~~~-------------~~s---~---------------------- 50 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILAS-CGTDKAVRIWSTSS-------------GDS---W---------------------- 50 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEe-ecCCceEEEEecCC-------------CCc---E----------------------
Confidence 3468989999999999 999999 99999999999874 000 0
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccc-cccccceeEEEEeCCCCEEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSL-KGHINKVNSVHYSGDSRHCV 1708 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL-~GHt~~VtsLaFSPDG~~LA 1708 (2004)
.++..| .+|+..|++++|+|.|++||
T Consensus 51 -----------------------------------------------------~ck~vld~~hkrsVRsvAwsp~g~~La 77 (312)
T KOG0645|consen 51 -----------------------------------------------------TCKTVLDDGHKRSVRSVAWSPHGRYLA 77 (312)
T ss_pred -----------------------------------------------------EEEEeccccchheeeeeeecCCCcEEE
Confidence 011111 25999999999999999999
Q ss_pred EEeCCCeEEEEECCCC--ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcccee
Q psy8748 1709 SGSLDGKLIIWDTWTG--NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~Tg--k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vs 1786 (2004)
+|+.|.++.||.-..+ +++..+.+|...|.|++|+++|++|++++.|..|-+|.++..+ .+.+...+.+|...|.
T Consensus 78 ~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd---Efec~aVL~~HtqDVK 154 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD---EFECIAVLQEHTQDVK 154 (312)
T ss_pred EeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC---cEEEEeeecccccccc
Confidence 9999999999976544 6788899999999999999999999999999999999998543 7888999999999999
Q ss_pred eeEEeCC-CcEEEeecCCeEEEEECCCCc--eeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q psy8748 1787 SCRFIDD-TTLLTGSGDMKIVTWNLETGQ--RIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863 (2004)
Q Consensus 1787 svafsdd-~~LlSgS~DGtI~IWDl~tg~--~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~ 1863 (2004)
.+.|++. ..|++++.|.+|++|+-..+. .....+.+|...|.+++|++.|..+++++.|++++||.....- -.
T Consensus 155 ~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~ 230 (312)
T KOG0645|consen 155 HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SG 230 (312)
T ss_pred EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----ch
Confidence 9999975 568999999999999876322 2234568899999999999999999999999999999865321 12
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEE-----cCCCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEE
Q psy8748 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY-----LPPNKNSGFTSCAVSSS-GRYIFCGSDDNNVHVW 1937 (2004)
Q Consensus 1864 ~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~-----~~~~~~s~ItsLafSPd-G~~LaSGSsDGsIrIW 1937 (2004)
.|..++..+.|. + ..|++++.|+.|++|.-...-.-..+ ....|...|++++|.|. .+.|++|+.||.|++|
T Consensus 231 ~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W 308 (312)
T KOG0645|consen 231 MHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFW 308 (312)
T ss_pred hcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEE
Confidence 467889999998 4 47999999999999986542111111 22456678999999994 7899999999999999
Q ss_pred ECC
Q psy8748 1938 DLL 1940 (2004)
Q Consensus 1938 DL~ 1940 (2004)
.+.
T Consensus 309 ~l~ 311 (312)
T KOG0645|consen 309 ELE 311 (312)
T ss_pred Eec
Confidence 864
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-28 Score=273.67 Aligned_cols=246 Identities=23% Similarity=0.414 Sum_probs=213.4
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
.+.|.||++.|.|+.|. .+.+++|+.|.+|+|||+.+|+.+.++-+|...|..+.|+ +.++++++.|..|.+||+.
T Consensus 230 ~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~ 305 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMA 305 (499)
T ss_pred HHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEecc
Confidence 45678999999999986 5699999999999999999999999999999999999998 7899999999999999998
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV 1844 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~ 1844 (2004)
... .....+.+.||...|..+.|.+. ++++++.|.+|++|++.+++.+ ..+.+|...|-|+.+. |+++++|+.
T Consensus 306 sps---~it~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~efv-Rtl~gHkRGIAClQYr--~rlvVSGSS 378 (499)
T KOG0281|consen 306 SPT---DITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCEFV-RTLNGHKRGIACLQYR--DRLVVSGSS 378 (499)
T ss_pred Cch---HHHHHHHHhhhhhheeeeccccc-eEEEecCCceEEEEeccceeee-hhhhcccccceehhcc--CeEEEecCC
Confidence 653 44555678899999999988655 9999999999999999999988 5568999999999885 899999999
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEE-------EcCCCCCCCeEEEE
Q psy8748 1845 DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIAT-------YLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1845 DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t-------~~~~~~~s~ItsLa 1917 (2004)
|.+|++||+..|.+++.+.+|+.-|.|+.|. .+.+++|+.||+|++||+..+..... .....|.+.|..+.
T Consensus 379 DntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 379 DNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred CceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 9999999999999999999999999999995 56899999999999999987654311 12234556788888
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1918 VSSSGRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1918 fSPdG~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
|. ...+++++.|.+|.|||..++.+-
T Consensus 457 FD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 457 FD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 84 578999999999999999776554
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-27 Score=271.73 Aligned_cols=290 Identities=23% Similarity=0.327 Sum_probs=242.2
Q ss_pred CCCCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCcccccccc
Q psy8748 1548 TNAPEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMM 1627 (2004)
Q Consensus 1548 t~a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~ 1627 (2004)
+.....|+..|+-+.||++|+|||| |+.|.+..||++.. +.
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAs-aSkD~Taiiw~v~~--------------------d~------------------ 257 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLAS-ASKDSTAIIWIVVY--------------------DV------------------ 257 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEee-ccCCceEEEEEEec--------------------Cc------------------
Confidence 3445569999999999999999999 99999999999866 11
Q ss_pred CCCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEE
Q psy8748 1628 KPTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHC 1707 (2004)
Q Consensus 1628 spdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~L 1707 (2004)
.++..+++.||..+|..+.||||.++|
T Consensus 258 -----------------------------------------------------~~kl~~tlvgh~~~V~yi~wSPDdryL 284 (519)
T KOG0293|consen 258 -----------------------------------------------------HFKLKKTLVGHSQPVSYIMWSPDDRYL 284 (519)
T ss_pred -----------------------------------------------------ceeeeeeeecccCceEEEEECCCCCeE
Confidence 012366788999999999999999999
Q ss_pred EEEeCCCeEEEEECCCCceEEEeeC-CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC-ccce
Q psy8748 1708 VSGSLDGKLIIWDTWTGNKTQVIPL-RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY-EGFL 1785 (2004)
Q Consensus 1708 ASGS~DGtIrVWDl~Tgk~l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh-~~~V 1785 (2004)
++|+.|..+++||+.+|...+.+.. +...+.+++|.|||..+++|+.|+.|..||++... .....+. ...+
T Consensus 285 laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-------~~~W~gvr~~~v 357 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-------LGNWEGVRDPKV 357 (519)
T ss_pred EecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-------hhccccccccee
Confidence 9999999999999999999887753 56789999999999999999999999999997642 1111121 2456
Q ss_pred eeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEec
Q psy8748 1786 SSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG 1864 (2004)
Q Consensus 1786 ssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~ 1864 (2004)
.+++.. ++..+++.+.|..|++|+.++......+ ....+|++++.+.+++++++.-.+..|++||+...+.++.+.+
T Consensus 358 ~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li--se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~G 435 (519)
T KOG0293|consen 358 HDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI--SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFG 435 (519)
T ss_pred EEEEEcCCCcEEEEEecccceeeechhhhhhhccc--cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhc
Confidence 777776 5566888899999999998876544222 4456899999999999999999999999999999888889988
Q ss_pred CCCC--eEEEEEeC-CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q psy8748 1865 HEAD--VNSVCFHP-SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS-SGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1865 h~s~--ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP-dG~~LaSGSsDGsIrIWDL~ 1940 (2004)
|... +..-||-. +..++++|++|++|+||+..+++.+..+ .+|...|.|++|+| +-.++|+|++||+|+||...
T Consensus 436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L--sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL--SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee--cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 8754 44445544 5579999999999999999999999988 57778999999999 55788999999999999864
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=262.33 Aligned_cols=308 Identities=18% Similarity=0.268 Sum_probs=262.1
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
....+..|++.|.+++.+|+.++++|||.|..-.+|++.+|.....+.+|+..|+++.|+.+|.+|++|+.+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
.++. ....+...-..+..+.|++.. .+++|+.||.+..|.+.++... +++.+|..++++=.|.|+|+.+++|
T Consensus 136 stg~------~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~-kv~~Gh~~~ct~G~f~pdGKr~~tg 208 (399)
T KOG0296|consen 136 STGG------EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC-KVMSGHNSPCTCGEFIPDGKRILTG 208 (399)
T ss_pred ccCc------eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee-eEecCCCCCcccccccCCCceEEEE
Confidence 8753 333444455667778888654 5888999999999999987444 6778999999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEecC-CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC------CCCCC---C
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGH-EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP------PNKNS---G 1912 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h-~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~------~~~~s---~ 1912 (2004)
..||+|++|+..+++++..+... .....++.++..+..++.|+.++.+++-+..+|+.+..... ..+.. .
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 99999999999999998887633 34678899999999999999999999999988888776642 11222 3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
|.++.++..-.+.|+|+-||+|.|||+...+..+.+. |...|+.+.|-+ ..+|++++.||.|+.||..+|++ .-.
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l---~~~ 363 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL---KFT 363 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccce---EEE
Confidence 4445555567789999999999999998887766665 888999999998 78999999999999999999954 556
Q ss_pred ecCCCCccccc
Q psy8748 1993 YNLEKKTIFCV 2003 (2004)
Q Consensus 1993 ~~~h~~~VtsV 2003 (2004)
+.+|..+|.++
T Consensus 364 y~GH~~~Il~f 374 (399)
T KOG0296|consen 364 YTGHQMGILDF 374 (399)
T ss_pred EecCchheeEE
Confidence 67888777653
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-26 Score=279.38 Aligned_cols=290 Identities=19% Similarity=0.360 Sum_probs=257.7
Q ss_pred cccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCC
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
.+...+.+|..++|+|...+++++-..|.|++||.+-+.++..|..|+++|++++|+|++.++++||.|-.|+||++...
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
++..++.||-+.|..+.|+.. ..++++++|.+|+||+..+++++ .+..+|...|.|..|+|....+++++-|
T Consensus 84 ------rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~i-avltGHnHYVMcAqFhptEDlIVSaSLD 156 (1202)
T KOG0292|consen 84 ------RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCI-AVLTGHNHYVMCAQFHPTEDLIVSASLD 156 (1202)
T ss_pred ------eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceE-EEEecCceEEEeeccCCccceEEEeccc
Confidence 677889999999999999854 56999999999999999999998 5668999999999999999999999999
Q ss_pred CeEEEEECCC--------C-------------------e--EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEcc
Q psy8748 1846 KSCKLWDFRE--------K-------------------K--CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1846 GsIrIWDlrs--------~-------------------k--~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLr 1896 (2004)
.+|++||+.. + . ....+.+|...|+-++|+|.-..+++|+.|..|++|.+.
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEec
Confidence 9999999752 1 0 123456899999999999999999999999999999987
Q ss_pred CCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeE
Q psy8748 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFV 1976 (2004)
Q Consensus 1897 tgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtI 1976 (2004)
..+.-..-...+|...|.++-|+|..++|++.++|++|+|||+.+.+.+.+++...++.+.++-+|..+++++|- |+-+
T Consensus 237 etKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm 315 (1202)
T KOG0292|consen 237 ETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGM 315 (1202)
T ss_pred cccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCce
Confidence 665544444567888999999999999999999999999999999999999988889999999999998766655 6667
Q ss_pred EEEECCCC
Q psy8748 1977 KVWQESNT 1984 (2004)
Q Consensus 1977 rIWdlstg 1984 (2004)
.+|.++..
T Consensus 316 ~VFkleRE 323 (1202)
T KOG0292|consen 316 IVFKLERE 323 (1202)
T ss_pred EEEEEccc
Confidence 78888744
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=275.74 Aligned_cols=286 Identities=23% Similarity=0.344 Sum_probs=250.0
Q ss_pred CCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcch
Q psy8748 1555 KEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSIN 1634 (2004)
Q Consensus 1555 k~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSid 1634 (2004)
+..|-.++|||.--|+.+ +-..|.|.+||..- +.
T Consensus 9 SsRvKglsFHP~rPwILt-slHsG~IQlWDYRM-------------~t-------------------------------- 42 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILT-SLHSGVIQLWDYRM-------------GT-------------------------------- 42 (1202)
T ss_pred cccccceecCCCCCEEEE-eecCceeeeehhhh-------------hh--------------------------------
Confidence 346889999999999999 99999999999865 11
Q ss_pred hhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCCC
Q psy8748 1635 IYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDG 1714 (2004)
Q Consensus 1635 i~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DG 1714 (2004)
.+..+.+|.++|+.++|+|++.++++||+|.
T Consensus 43 -------------------------------------------------li~rFdeHdGpVRgv~FH~~qplFVSGGDDy 73 (1202)
T KOG0292|consen 43 -------------------------------------------------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDY 73 (1202)
T ss_pred -------------------------------------------------HHhhhhccCCccceeeecCCCCeEEecCCcc
Confidence 1334667999999999999999999999999
Q ss_pred eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-C
Q psy8748 1715 KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-D 1793 (2004)
Q Consensus 1715 tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d 1793 (2004)
.|+||+.++.+++.++.+|-+.|+.+.|++.-.++++++.|.+|+||++.++ +.+..+.||...|.|..|++ .
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr------~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR------KCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred EEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC------ceEEEEecCceEEEeeccCCcc
Confidence 9999999999999999999999999999999999999999999999999864 67889999999999999998 6
Q ss_pred CcEEEeecCCeEEEEECCC--------C--------------------ceeEEeeccccCCeEEEEECCCCCEEEEEECC
Q psy8748 1794 TTLLTGSGDMKIVTWNLET--------G--------------------QRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1794 ~~LlSgS~DGtI~IWDl~t--------g--------------------~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
+.+++++-|.+|++||+.. + ..+..+..+|...|.-++|+|.-..|++|++|
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD 227 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD 227 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCc
Confidence 6799999999999999852 1 12345578999999999999999999999999
Q ss_pred CeEEEEECCCCeE--EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC
Q psy8748 1846 KSCKLWDFREKKC--VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1846 GsIrIWDlrs~k~--I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~ 1923 (2004)
..|++|.+...+. +.+..+|...|.++-|+|..+.+++.|+|+.|+|||+...+.+.++.. .....+.++.+|..+
T Consensus 228 RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr--endRFW~laahP~lN 305 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR--ENDRFWILAAHPELN 305 (1202)
T ss_pred ceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec--cCCeEEEEEecCCcc
Confidence 9999999876542 566789999999999999999999999999999999999988888853 346789999999999
Q ss_pred EEEEEeCCCeEEEEECCCCee
Q psy8748 1924 YIFCGSDDNNVHVWDLLKTTH 1944 (2004)
Q Consensus 1924 ~LaSGSsDGsIrIWDL~tge~ 1944 (2004)
++++|. |+-+.+|.+....+
T Consensus 306 LfAAgH-DsGm~VFkleRErp 325 (1202)
T KOG0292|consen 306 LFAAGH-DSGMIVFKLERERP 325 (1202)
T ss_pred eeeeec-CCceEEEEEcccCc
Confidence 998885 55577777754443
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-27 Score=266.64 Aligned_cols=275 Identities=22% Similarity=0.392 Sum_probs=241.8
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
...+|.|+.+. ...+++|..|++|+|||..+..+...+.+|++.|.|+.|. .+.+++|+.|.+|++||++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg---- 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG---- 267 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC----
Confidence 56789999975 5579999999999999999999999999999999999996 669999999999999999876
Q ss_pred cceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCce--eEEeeccccCCeEEEEECCCCCEEEEEECCCeE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQR--IHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSC 1848 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~--i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsI 1848 (2004)
+.+.++.+|...|..+.|+ ++++++++.|..+.+||+..... ....+.+|...|..+.|+ .+++++++.|.+|
T Consensus 268 --e~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 268 --EPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred --chhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE
Confidence 5667788899999998886 45899999999999999987653 234467999999999996 6699999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEE
Q psy8748 1849 KLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCG 1928 (2004)
Q Consensus 1849 rIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSG 1928 (2004)
++|++.+++.++++.+|...|.|+.+ .|+++++|+.|.+|++||+..|.++..+ .+|..-|.|+.|. .+.+++|
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL--eGHEeLvRciRFd--~krIVSG 416 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL--EGHEELVRCIRFD--NKRIVSG 416 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH--hchHHhhhheeec--Cceeeec
Confidence 99999999999999999999999887 5789999999999999999999998877 5676789999995 6789999
Q ss_pred eCCCeEEEEECCCCe---------eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1929 SDDNNVHVWDLLKTT---------HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1929 SsDGsIrIWDL~tge---------~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
..||+|++||+..+. ++.++..|.++|..+.| |...+++++.|.+|-|||+.++-.
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 999999999997654 33445679999999999 667899999999999999988754
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=274.50 Aligned_cols=285 Identities=20% Similarity=0.336 Sum_probs=245.9
Q ss_pred CCCCCCCeEEEEEcc-CCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1551 PEPCKEQRNAVSFHA-CSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSP-dGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
-.+|..+|+++.|.| .|.+|++ |+.|+.|+||++-. ++
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS-~gmD~~vklW~vy~--------------------~~-------------------- 248 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLS-GGMDGLVKLWNVYD--------------------DR-------------------- 248 (503)
T ss_pred ccCCccccchhhhccceeeEEEe-cCCCceEEEEEEec--------------------Cc--------------------
Confidence 345889999999999 8999999 99999999999866 11
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVS 1709 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LAS 1709 (2004)
.+++++.||..+|.+++|+.+|..+++
T Consensus 249 -----------------------------------------------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 249 -----------------------------------------------------RCLRTFKGHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred -----------------------------------------------------ceehhhhcchhhhhhhhccccCCeeee
Confidence 135677889999999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCC-CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeee
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSG-NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSC 1788 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg-~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssv 1788 (2004)
+|.|+.|++||+++|++...+.. ...++|+.|+|++ +.+++|+.|+.|+.||++++ +.++.+..|-+.+..+
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~------kvvqeYd~hLg~i~~i 348 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG------KVVQEYDRHLGAILDI 348 (503)
T ss_pred eecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccch------HHHHHHHhhhhheeee
Confidence 99999999999999999998874 4568999999998 89999999999999999865 4566777788899999
Q ss_pred EEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCC---eEEEEEec
Q psy8748 1789 RFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK---KCVQTFFG 1864 (2004)
Q Consensus 1789 afsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~---k~I~tl~~ 1864 (2004)
.|.++ .++++.++|+.+++|+.+.+-.+..+...+.....++..+|++++++.-+.|+.|.++.+... ...+.+.+
T Consensus 349 ~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG 428 (503)
T KOG0282|consen 349 TFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG 428 (503)
T ss_pred EEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc
Confidence 99865 569999999999999999988877666666677889999999999999999999999986532 22345566
Q ss_pred CC--CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEE
Q psy8748 1865 HE--ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS-GRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1865 h~--s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPd-G~~LaSGSsDGsIrIWD 1938 (2004)
|. +.-..+.|||||.+|++|+.||.+.+||.++-+.+.++. .|...+..+.|+|. ...+|+++.||.|++||
T Consensus 429 h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk--ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 429 HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK--AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc--cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 65 345678999999999999999999999999999888874 55688999999994 56899999999999996
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=258.53 Aligned_cols=283 Identities=23% Similarity=0.429 Sum_probs=250.0
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe--------eCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI--------PLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti--------~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
|...-+.|..|||||+||++|+.||.|.|||..+|+....+ --++.+|.|++|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 34566889999999999999999999999999999776543 3478899999999999999999999999999
Q ss_pred EcCCCCCCCcceEEEEEe-cCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEE
Q psy8748 1762 DLNNRDSTGAAKVIRELL-GYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYF 1839 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~-gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~L 1839 (2004)
.+.++. +++.+. .|...++++.|+ ++..+++++.|.++++.-+++|+++.. +.+|...|+...|.++|..+
T Consensus 291 ri~tG~------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE-frGHsSyvn~a~ft~dG~~i 363 (508)
T KOG0275|consen 291 RIETGQ------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE-FRGHSSYVNEATFTDDGHHI 363 (508)
T ss_pred EEecch------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHH-hcCccccccceEEcCCCCeE
Confidence 998764 334443 788999999999 556799999999999999999999844 57999999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEec--CCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccCCceeEEEcCC-CCCCCeEE
Q psy8748 1840 VTGSVDKSCKLWDFREKKCVQTFFG--HEADVNSVCFHP-SGLAFATGSEDKTARLFDIRADQQIATYLPP-NKNSGFTS 1915 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs~k~I~tl~~--h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-~~~s~Its 1915 (2004)
++++.||+|++|+.++.+++.+++. ...+|+++...| +...++++...++|+|.++. |+.+..+... ...+...+
T Consensus 364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~ 442 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFIN 442 (508)
T ss_pred EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEE
Confidence 9999999999999999999988864 345788888877 55689999999999999986 7777777433 33466788
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1916 CAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1916 LafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
++.+|.|.++++.+.|+.++.|.+.+|+...++..|...|.+++-+|..+.+++-+.||.+++|.
T Consensus 443 ~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=279.61 Aligned_cols=211 Identities=23% Similarity=0.404 Sum_probs=177.6
Q ss_pred CcccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEec-CCCEEEEeecCC
Q psy8748 1678 PKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQ-SGNFVACGGMDN 1756 (2004)
Q Consensus 1678 ~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSP-dg~~LaSGS~DG 1756 (2004)
..+.-.|.+.+.||++.|.++.||.+ ++|++++.|.+|++|++....++..|. |...|+|++|+| |.++|++|+-||
T Consensus 355 f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~ 432 (712)
T KOG0283|consen 355 FVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDG 432 (712)
T ss_pred ccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeeccccc
Confidence 34466789999999999999999965 589999999999999999999999887 999999999999 788999999999
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
.|++|++.. ..|..|. ....-|++++|.|||
T Consensus 433 KvRiWsI~d-------------------------------------~~Vv~W~------------Dl~~lITAvcy~PdG 463 (712)
T KOG0283|consen 433 KVRLWSISD-------------------------------------KKVVDWN------------DLRDLITAVCYSPDG 463 (712)
T ss_pred ceEEeecCc-------------------------------------CeeEeeh------------hhhhhheeEEeccCC
Confidence 999999853 2334443 112558999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEec--------CCCCeEEEEEeCC-CCEEEEEECCCeEEEEEccCCceeEEEcCC
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFG--------HEADVNSVCFHPS-GLAFATGSEDKTARLFDIRADQQIATYLPP 1907 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k~I~tl~~--------h~s~ItsIafSPd-g~~LaSgS~DGtIrIWDLrtgk~i~t~~~~ 1907 (2004)
+..++|+.+|.+++|+....+....+.- ....|+++.|.|. ...+++.+.|..|+|||.++...+.++...
T Consensus 464 k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~ 543 (712)
T KOG0283|consen 464 KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF 543 (712)
T ss_pred ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc
Confidence 9999999999999999988776554421 1237999999984 345888889999999999888888888765
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1908 NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1908 ~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
.....-....|+.||++|++|++|..|++|+.
T Consensus 544 ~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 544 RNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 55555677899999999999999999999997
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-26 Score=249.73 Aligned_cols=289 Identities=20% Similarity=0.318 Sum_probs=258.6
Q ss_pred ccccccccceeEEEEe---CCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1686 KSLKGHINKVNSVHYS---GDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFS---PDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
.+-.||+.+|-.++|| |+|-+|++++.||.-.+-+-++|.-+.++.+|.+.|.+.+.+.+...-++++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 3567999999999999 5888999999999999999999999999999999999999998888999999999999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
.-++.... ...|...|..++|+ +.+++++|+.+..+++||++..+.....+.+|.+.|..+.|....+.|++
T Consensus 88 a~tgdelh-------sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 88 AVTGDELH-------SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhh-------hhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence 87764222 23577889999999 45679999999999999999887776777899999999999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCC
Q psy8748 1842 GSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1842 GS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPd 1921 (2004)
++.|++|++||.+++..++++. ...+|+++.++++|.++.++ ..+.|.+||..+...+..+..+ ..|.+...+|+
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P---~nV~SASL~P~ 235 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP---CNVESASLHPK 235 (334)
T ss_pred eccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc---cccccccccCC
Confidence 9999999999999999998884 47889999999999877665 5778999999999988888544 45899999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1922 GRYIFCGSDDNNVHVWDLLKTTHNGVL-SGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1922 G~~LaSGSsDGsIrIWDL~tge~l~tL-~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
...+++|+.|+.++.||..+++.+..+ ++|.++|.|+.|+|||..-++|+.||+|++|...-++.
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 999999999999999999999999886 89999999999999999999999999999999876643
|
|
| >KOG3613|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-27 Score=312.84 Aligned_cols=201 Identities=32% Similarity=0.402 Sum_probs=169.7
Q ss_pred hHHHHHHHHHhhhchhhHHHHHHHHHHHHhcc-CccccccCC-cchHHhhhcCCCccc-cccCCCCCCCCCcchhhHHHH
Q psy8748 26 NHVCYLADLLGRCKVQKVTLHCILASVISAAR-KPAKVAVGG-NFVQEILSFNSVEDE-DVKNNNSGGSGVSSQCLTLQI 102 (2004)
Q Consensus 26 ~~~~~~~~~l~~~k~q~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~q~ 102 (2004)
.++.||++||.|||+|||++|||+|+|++.++ +..+.+.++ ...+++++.|-.++. .+++ ++|+
T Consensus 848 ~~~~~i~~ll~r~K~qk~~l~~llss~~s~~~~~~~~~n~k~~~~~~~~~S~~l~~d~ql~~~-------------~~q~ 914 (1749)
T KOG3613|consen 848 KFVEFISTLLCRIKLQKVILHSLLSSLCSLQKTLGLKDNIKSGTLAELILSINLGLDIQLNED-------------SLQA 914 (1749)
T ss_pred cHHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHhccccccCCCccHHHHHhhchhhhhhhchh-------------HHHH
Confidence 46889999999999999999999999999887 666666655 667777775554443 3335 8999
Q ss_pred HHHHHHHHHHhHhhhhcccCCCCCCCCCCccccccCCCCC------CCCCCcccCCCcchHHHHHHHhccCcCccccchh
Q psy8748 103 QLLKLLLSALILEHEVNTKRGEVEPSPPSLSSVDLTGNDP------KYYPGRIIPQQPMFLCALARALESNPGLRASHQH 176 (2004)
Q Consensus 103 ~ll~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~------~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (2004)
+||+|++.+|+|||+|+..+++.+.++.+|..+-+.-... +|++++++.+|+||++||+|||++ + +++||+
T Consensus 915 ~Ll~llq~~i~le~~v~~~~e~~~~~~~s~~~~~~~~~~~~~~~ld~~~~~~~~~~~~lfl~~vv~~L~~-~--~~~h~~ 991 (1749)
T KOG3613|consen 915 ELLFLLQIAIVLEHEVGRLPESRSNSFDSFVSDSLEMLHSGAIRLDQYDDPASILYQGLFLLAVVRALKD-G--PGLHPM 991 (1749)
T ss_pred HHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHhchhcCcchhhccCchHHHHHHHHHHHHHHhccc-C--CCCCHH
Confidence 9999999999999999999999998888655554433332 999999999999999999999977 3 999999
Q ss_pred hhHHhhhcccccCccccchHHHHHHHHHhcHHHHHHHHhhhcccccccccccccccccCcchhhccccccc
Q psy8748 177 WTTMLTCALPYLGKSLTTVVKVAIKALCANVDYLAEVYSVQNENKLKTKYAHSELSNISDTLFSKISDGKR 247 (2004)
Q Consensus 177 w~~~~~~~l~~~~~~l~~~~~~~~~~~c~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (2004)
|+.+||.+|||+||||+|+|+++++|||+|+|++.++|+.+. .+|-.++=..+||||+++.+||--
T Consensus 992 w~~lIt~sLp~~~~sL~~~vv~~v~qLcknvd~l~~~~~~~~-----~~~~~~~~~~~p~d~~l~~Le~Lt 1057 (1749)
T KOG3613|consen 992 WLILITESLPYFGKSLQRIVVPVVVQLCKNVDRLKKQYESEY-----GKSPDDPADYIPPDYLLTLLEGLT 1057 (1749)
T ss_pred HHHHHHHHHHHHHhhhheeehhhHHHHHHHHHHHHHHHhhcc-----CCCCCchhhhCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998643 233344444899999999998854
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=237.62 Aligned_cols=282 Identities=21% Similarity=0.271 Sum_probs=240.3
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
..|+++|+++.|+-||+|..+ ++.|.+||+|+... +.+
T Consensus 14 ~~~qgaV~avryN~dGnY~lt-cGsdrtvrLWNp~r-------------g~l---------------------------- 51 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLT-CGSDRTVRLWNPLR-------------GAL---------------------------- 51 (307)
T ss_pred cccccceEEEEEccCCCEEEE-cCCCceEEeecccc-------------cce----------------------------
Confidence 348889999999999999999 99999999999766 222
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
++++.||...|..++.+.|...+++||
T Consensus 52 -----------------------------------------------------iktYsghG~EVlD~~~s~Dnskf~s~G 78 (307)
T KOG0316|consen 52 -----------------------------------------------------IKTYSGHGHEVLDAALSSDNSKFASCG 78 (307)
T ss_pred -----------------------------------------------------eeeecCCCceeeeccccccccccccCC
Confidence 445667888999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.|..+.+||+.+|+..+.+.+|.+.|+.+.|+.+...+++|+.|..+++||.+.. ..++++.+....+.|.++...
T Consensus 79 gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~----s~ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR----SFEPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred CCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC----CCCccchhhhhcCceeEEEec
Confidence 9999999999999999999999999999999999999999999999999999875 456666677777777777653
Q ss_pred CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeE-
Q psy8748 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVN- 1870 (2004)
Q Consensus 1792 dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~It- 1870 (2004)
+..+++|+.||+++.||++.|+.... ....+|+|++|++++++.++++.|+++++.|-.+|+.+..+++|...-.
T Consensus 155 -~heIvaGS~DGtvRtydiR~G~l~sD---y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 155 -EHEIVAGSVDGTVRTYDIRKGTLSSD---YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK 230 (307)
T ss_pred -ccEEEeeccCCcEEEEEeecceeehh---hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee
Confidence 55799999999999999999987633 3456899999999999999999999999999999999999999976543
Q ss_pred -EEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1871 -SVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1871 -sIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
..++.....++++|++||.|++||+.....+..+.... .-.++.+.++|....++++... .+..|-
T Consensus 231 ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~-~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVS-TVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred eeeeecccceeEEeccCCceEEEEEeccceeeeeeccCC-ceeEEeeecccCccceeEecCC-ceecee
Confidence 44667777899999999999999999988888874332 2347899999987777776544 455554
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=238.24 Aligned_cols=288 Identities=18% Similarity=0.307 Sum_probs=241.0
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
..|+||..+++.+.|+.+|.+|.+++.|.+..||-..+|+.+.++.+|.+.|.|+..+.+.+.+++|+.|.++++||+++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 35789999999999999999999999999999999889999999999999999999999999999999999999999987
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec------CCeEEEEECCC-------CceeEEeeccccCCeEEEEE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG------DMKIVTWNLET-------GQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~------DGtI~IWDl~t-------g~~i~~il~~h~~~ItsLaf 1832 (2004)
++ .+.. ......+..+.|+.++.++..+. .+.|.++|++. .++..++ ..+...++..-|
T Consensus 84 Gk------~la~-~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~W 155 (327)
T KOG0643|consen 84 GK------QLAT-WKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALW 155 (327)
T ss_pred Cc------EEEE-eecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeeee
Confidence 64 2222 23456788889986655444433 36799999983 3334333 456688999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCe-EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCC
Q psy8748 1833 SPDGQYFVTGSVDKSCKLWDFREKK-CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNS 1911 (2004)
Q Consensus 1833 SPdg~~LaSGS~DGsIrIWDlrs~k-~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s 1911 (2004)
.|-+.+|++|..||.|.+||.+++. .+.....|...|+.+++++|..++++++.|.+-++||..+...+.++. ...
T Consensus 156 g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~---te~ 232 (327)
T KOG0643|consen 156 GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT---TER 232 (327)
T ss_pred cccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee---ecc
Confidence 9999999999999999999999974 456667899999999999999999999999999999999999999884 346
Q ss_pred CeEEEEEcCCCCEEEEEeCCCe--E------------EEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q psy8748 1912 GFTSCAVSSSGRYIFCGSDDNN--V------------HVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVK 1977 (2004)
Q Consensus 1912 ~ItsLafSPdG~~LaSGSsDGs--I------------rIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIr 1977 (2004)
++.+.+++|...+++.|+...- | ++|++-..+.+..+++|-++|++++|+|+|+..++||.||.|+
T Consensus 233 PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 233 PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence 7999999998888877754321 2 2223223345667789999999999999999999999999999
Q ss_pred EEECCCC
Q psy8748 1978 VWQESNT 1984 (2004)
Q Consensus 1978 IWdlstg 1984 (2004)
+..++..
T Consensus 313 ~h~Fd~~ 319 (327)
T KOG0643|consen 313 LHHFDSN 319 (327)
T ss_pred EEEeccc
Confidence 9877654
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=258.80 Aligned_cols=290 Identities=21% Similarity=0.363 Sum_probs=253.4
Q ss_pred ccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eEEEeeCCCCceEEEEEecCCCEEEEeecCCe
Q psy8748 1680 VKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNM 1757 (2004)
Q Consensus 1680 lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGt 1757 (2004)
++......+..|.+.|..+.|-++...|++||.|..|++|+...++ .+.++.+..+.|+++.|.+++..+++++.|+.
T Consensus 163 lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~ 242 (459)
T KOG0288|consen 163 LPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKN 242 (459)
T ss_pred cchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCc
Confidence 4556677899999999999999998999999999999999987665 66778888899999999999999999999999
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
+++|+++.. ....++.+|.+.++++.|..+.. +++|+.|.+|+.||+....+...++.+ ..+..|+.+ +
T Consensus 243 ~r~Wnvd~~------r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~--~ 312 (459)
T KOG0288|consen 243 LRLWNVDSL------RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS--I 312 (459)
T ss_pred eeeeeccch------hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc--ccccceEec--c
Confidence 999999754 56678889999999999986554 999999999999999998887666433 335555554 5
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCC--CCCeE
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNK--NSGFT 1914 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~--~s~It 1914 (2004)
..+++|..|++|++||.+...+......+. .|+++..+++|..+.+++.|.++.+.|+++......+...+. ....+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccc
Confidence 678899999999999999999988887655 999999999999999999999999999999888877754432 24578
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCC--CeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1915 SCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHEN--RVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1915 sLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~--~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
.+.|||++.|+++|+.||.|+||++.++++.+.+..... .|++++|+|.|..+++++.++.+.+|.
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999999999999999876544 599999999999999999999999993
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=248.64 Aligned_cols=285 Identities=24% Similarity=0.353 Sum_probs=240.7
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCC---EEEEeecCCeEEEEEcCCC
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN---FVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~---~LaSGS~DGtIrVWDl~t~ 1766 (2004)
-|.+.|.++... ++++++|++||.+++|| ..|+....+.+|.++|.+++|.-... .|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 389999999987 78999999999999999 58999999999999999999865433 6999999999999999876
Q ss_pred CCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCc------------------------eeEEeec
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQ------------------------RIHEVAQ 1821 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~------------------------~i~~il~ 1821 (2004)
+.. .+......||...|.++... ++.++++|+.|..|.+|+..+.. .....+.
T Consensus 180 ~~~--~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 180 ENK--VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred hhh--hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 432 23333445999999999965 66789999999999999932110 1123367
Q ss_pred cccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce-
Q psy8748 1822 AHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ- 1900 (2004)
Q Consensus 1822 ~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~- 1900 (2004)
+|..+|.++.|++ ...+++++.|.+|+.||+.++..+.++.+ ...+.|+.++|..+.+++|+.|..+++||.+++.-
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence 8999999999997 67899999999999999999998887754 56799999999999999999999999999987643
Q ss_pred eEEEcCCCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe-eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSS-GRYIFCGSDDNNVHVWDLLKTT-HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKV 1978 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPd-G~~LaSGSsDGsIrIWDL~tge-~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrI 1978 (2004)
+......+|...|..+.|+|. ...|++|+.||++++||+++.. ++..+.+|.+.|.++.|. ++..+++||.|.+|+|
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i 414 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRI 414 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEE
Confidence 344445678889999999995 5668899999999999999887 999999999999999997 5568999999999999
Q ss_pred EECC
Q psy8748 1979 WQES 1982 (2004)
Q Consensus 1979 Wdls 1982 (2004)
+.-.
T Consensus 415 ~~~~ 418 (423)
T KOG0313|consen 415 FKGS 418 (423)
T ss_pred eccc
Confidence 9754
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=235.18 Aligned_cols=277 Identities=19% Similarity=0.233 Sum_probs=243.8
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE--eeCCCCceEEEEEec-CCCEEEEeecCCeEEEEE
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQV--IPLRSAWVMSVAFAQ-SGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~t--i~~Ht~~ItsLafSP-dg~~LaSGS~DGtIrVWD 1762 (2004)
+.+++|...|.+++|+.+|..|++|+.|+++.||++..++.... ..+|.+.|-.++|+| +.+.+++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 67889999999999999999999999999999999987755443 468999999999998 567999999999999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
+..+ +.........+.+....+.+++++++++.|..|.+.|.++.+..... .....+.-++|+-++.+|+..
T Consensus 94 ~r~~------k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 94 IRSG------KCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred eccC------cEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEe
Confidence 9854 45555556666677666778889999999999999999988776443 445668889999888888877
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
...|.|.|.....-+++..+++|.....||.|+|+|++|++|+.|..+.+||+...-+...+ .....+|..+.|+.||
T Consensus 166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i--sRldwpVRTlSFS~dg 243 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI--SRLDWPVRTLSFSHDG 243 (313)
T ss_pred cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee--ccccCceEEEEeccCc
Confidence 77899999999999999999999999999999999999999999999999999988777777 4556789999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECC
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWD 1973 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D 1973 (2004)
++||+|++|..|-|=++++|..+..+. +.++-..++|+|...+||-+++|
T Consensus 244 ~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 244 RMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 999999999999999999999999887 78999999999999999988765
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=246.44 Aligned_cols=283 Identities=27% Similarity=0.405 Sum_probs=239.2
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
|.+.|.+|... ++++.| |++||+++|||... +
T Consensus 104 hdDWVSsv~~~--~~~Ilt-gsYDg~~riWd~~G--------------k------------------------------- 135 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILT-GSYDGTSRIWDLKG--------------K------------------------------- 135 (423)
T ss_pred chhhhhhhccc--CceEEE-eecCCeeEEEecCC--------------c-------------------------------
Confidence 88899999998 899999 99999999999765 1
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCC---CCEEEEE
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGD---SRHCVSG 1710 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPD---G~~LASG 1710 (2004)
..+.+.||+++|.+++|.-. ...++++
T Consensus 136 --------------------------------------------------~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa 165 (423)
T KOG0313|consen 136 --------------------------------------------------SIKTIVGHTGPIKSVAWVIKNSSSCLFVSA 165 (423)
T ss_pred --------------------------------------------------eEEEEecCCcceeeeEEEecCCccceEEEe
Confidence 23456789999998888632 2369999
Q ss_pred eCCCeEEEEECCCCceE----EEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC-------------------
Q psy8748 1711 SLDGKLIIWDTWTGNKT----QVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD------------------- 1767 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tgk~l----~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~------------------- 1767 (2004)
+.|.++++|.++.++.. ..-.+|...|.++...++|..+++|+.|..+++|+.....
T Consensus 166 s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~ 245 (423)
T KOG0313|consen 166 SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK 245 (423)
T ss_pred cCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence 99999999998877543 2335899999999999999999999999999999933211
Q ss_pred CCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCe
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGs 1847 (2004)
.......+..+.+|...|.++.|.+...+++++.|.+|+.||+.++.....+. ....+.|+..+|..+++++|+.|..
T Consensus 246 ~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 246 EGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDRH 323 (423)
T ss_pred cccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCCc
Confidence 11234456778999999999999999999999999999999999999886663 4567999999999999999999999
Q ss_pred EEEEECCCCe---EEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEEccCCc-eeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1848 CKLWDFREKK---CVQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQ-QIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1848 IrIWDlrs~k---~I~tl~~h~s~ItsIafSPdg-~~LaSgS~DGtIrIWDLrtgk-~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
|++||.+++. ....+.+|...|.++.|+|.. ..|++|+.||++++||+++.+ .+..+ ..|...|.++.|. ++
T Consensus 324 irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI--~~h~DKvl~vdW~-~~ 400 (423)
T KOG0313|consen 324 IRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI--AGHNDKVLSVDWN-EG 400 (423)
T ss_pred eeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee--ccCCceEEEEecc-CC
Confidence 9999998653 456788999999999999955 468999999999999999887 67666 5667889999997 46
Q ss_pred CEEEEEeCCCeEEEEEC
Q psy8748 1923 RYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL 1939 (2004)
..|++|+.|++|+|+..
T Consensus 401 ~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 401 GLIVSGGADNKLRIFKG 417 (423)
T ss_pred ceEEeccCcceEEEecc
Confidence 78999999999999874
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-24 Score=260.86 Aligned_cols=278 Identities=23% Similarity=0.404 Sum_probs=244.0
Q ss_pred eeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceE
Q psy8748 1695 VNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1695 VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
.+-+.|+ ..+.+|+|. +..|++|+..++........+...|+++.|+++|.+|++|..+|.|.+||.... +.
T Consensus 180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~------k~ 251 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ------KK 251 (484)
T ss_pred hhHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc------cc
Confidence 3457788 344566664 458999999999977777777899999999999999999999999999998754 34
Q ss_pred EEEEec-CccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1775 IRELLG-YEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1775 i~sl~g-h~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
...+.+ |...|.+++|. ...+.+|+.+|.|..+|++..+.......+|...|..++|++|++++++|+.|+.+.|||.
T Consensus 252 ~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG 330 (484)
T ss_pred cccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence 455556 89999999998 6778999999999999999888776667889999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEeC-CCCEEEEEE--CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEE--
Q psy8748 1854 REKKCVQTFFGHEADVNSVCFHP-SGLAFATGS--EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCG-- 1928 (2004)
Q Consensus 1854 rs~k~I~tl~~h~s~ItsIafSP-dg~~LaSgS--~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSG-- 1928 (2004)
....+...+..|...|.+++|+| ....||+|+ .|+.|++||..++..+... .....|..+.|++..+-|+++
T Consensus 331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v---dtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV---DTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc---ccCCceeeEEEcCCCCEEEEecC
Confidence 88889999999999999999999 566788865 5899999999999988776 455789999999998777754
Q ss_pred eCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1929 SDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1929 SsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
..++.|.||+..+.+.+..+.+|..+|..++++|||..+++|+.|.++++|++-+.
T Consensus 408 ~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 45778999999999999999999999999999999999999999999999998764
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=256.19 Aligned_cols=420 Identities=17% Similarity=0.251 Sum_probs=282.2
Q ss_pred CCCCCCCeEEEEEccCCC---EEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCcccccccc
Q psy8748 1551 PEPCKEQRNAVSFHACST---LLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMM 1627 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk---~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~ 1627 (2004)
..+|+..|+|+.+-|+.+ +++| |+.||.|++|.+.. ....+..+++++...+.+...........
T Consensus 50 l~GH~a~VnC~~~l~~s~~~a~~vs-G~sD~~v~lW~l~~-----------~~~~~i~~~~g~~~~~~cv~a~~~~~~~~ 117 (764)
T KOG1063|consen 50 LDGHVARVNCVHWLPTSEIVAEMVS-GDSDGRVILWKLRD-----------EYLIKIYTIQGHCKECVCVVARSSVMTCK 117 (764)
T ss_pred ccCCccceEEEEEcccccccceEEE-ccCCCcEEEEEEee-----------hheEEEEeecCcceeEEEEEeeeeEEEee
Confidence 456999999999999998 8999 99999999999974 12344555555433322211111000001
Q ss_pred CCCCcchhhhhHhHH-----HHHHHHHHH----HHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEE
Q psy8748 1628 KPTSSINIYLKLQTA-----ELKKELTQL----IDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSV 1698 (2004)
Q Consensus 1628 spdgSidi~i~~~~~-----ql~k~i~ql----~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsL 1698 (2004)
..++.+..+-....+ .++...... .........-..................-++....++.||++.|.++
T Consensus 118 ~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl 197 (764)
T KOG1063|consen 118 AADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSL 197 (764)
T ss_pred ccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhh
Confidence 233333332221111 111122221 21111000000000001100011111122667888999999999999
Q ss_pred EEeCCCC---EEEEEeCCCeEEEEECCCCc---------------------eEEE----------eeCCCCceEEEEEec
Q psy8748 1699 HYSGDSR---HCVSGSLDGKLIIWDTWTGN---------------------KTQV----------IPLRSAWVMSVAFAQ 1744 (2004)
Q Consensus 1699 aFSPDG~---~LASGS~DGtIrVWDl~Tgk---------------------~l~t----------i~~Ht~~ItsLafSP 1744 (2004)
+|...+. +||++|.|..||||.+.-+. .... +.+|+++|+++.|+|
T Consensus 198 ~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p 277 (764)
T KOG1063|consen 198 AFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP 277 (764)
T ss_pred hhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc
Confidence 9986444 89999999999999754222 1111 238999999999999
Q ss_pred CCCEEEEeecCCeEEEEEcCCCCCCCcce-EEEEEecCccceeeeEEeC-CCcEEEeecCCeEEEEECCCCc--eeEEee
Q psy8748 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAK-VIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQ--RIHEVA 1820 (2004)
Q Consensus 1745 dg~~LaSGS~DGtIrVWDl~t~~~~~~~k-~i~sl~gh~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~--~i~~il 1820 (2004)
.+..|++++.|.++.+|..++........ .+....+.......+.|++ ++.+++-+..|..++|...... ......
T Consensus 278 ~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~i 357 (764)
T KOG1063|consen 278 EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVI 357 (764)
T ss_pred chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccc
Confidence 99999999999999999887542111111 1112223344566666764 4568888899999999833221 223346
Q ss_pred ccccCCeEEEEECCCCCEEEEEECCCeEEEEECC-------------------------C----------CeE-------
Q psy8748 1821 QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR-------------------------E----------KKC------- 1858 (2004)
Q Consensus 1821 ~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlr-------------------------s----------~k~------- 1858 (2004)
.+|.+.|++++|+|.|.++++.+.|-+-|+|-.- + .+.
T Consensus 358 SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence 7899999999999999999999988766665211 0 000
Q ss_pred --------------------------------------------------------------------------------
Q psy8748 1859 -------------------------------------------------------------------------------- 1858 (2004)
Q Consensus 1859 -------------------------------------------------------------------------------- 1858 (2004)
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence
Q ss_pred EEEEecCCCCeEEEEEeCCCCEEEEEECCC-----eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCe
Q psy8748 1859 VQTFFGHEADVNSVCFHPSGLAFATGSEDK-----TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNN 1933 (2004)
Q Consensus 1859 I~tl~~h~s~ItsIafSPdg~~LaSgS~DG-----tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGs 1933 (2004)
+..+.+|...|.+++.+|+|+.+++++... .|++|+..+......+ ..|.-.|+.++|+|||++|++.+.|.+
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L--~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL--EGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee--cccceEEEEEEECCCCcEEEEeecCce
Confidence 011124788899999999999999998654 4999999988887755 567788999999999999999999999
Q ss_pred EEEEECCCCee----eEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1934 VHVWDLLKTTH----NGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1934 IrIWDL~tge~----l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
+.+|....... ....+.|+.-|.+..|+|++.+++|++.|.+|++|...++
T Consensus 596 ~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99998744322 2336789999999999999999999999999999999887
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-24 Score=267.00 Aligned_cols=293 Identities=19% Similarity=0.337 Sum_probs=221.4
Q ss_pred cccc-ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCC----------CceEEEEEec---CCC--EE
Q psy8748 1686 KSLK-GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS----------AWVMSVAFAQ---SGN--FV 1749 (2004)
Q Consensus 1686 ~sL~-GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht----------~~ItsLafSP---dg~--~L 1749 (2004)
..+. +|.+.|+++.||+||+|||+||.||.|+||.+...+....-.+.. +.+..+.-++ .++ ..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3455 899999999999999999999999999999876533311110000 0011111111 001 11
Q ss_pred EEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEE
Q psy8748 1750 ACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVS 1829 (2004)
Q Consensus 1750 aSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~Its 1829 (2004)
-.+..... .+.... ......+++..+.||.+.|..+.|+.+++|++++.|.+|++|++....++..+ .|...|+|
T Consensus 340 ~~~~~s~~-~~~p~~--~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F--~HndfVTc 414 (712)
T KOG0283|consen 340 RKGSQSPC-VLLPLK--AFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF--SHNDFVTC 414 (712)
T ss_pred ccccCCcc-ccCCCc--cccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE--ecCCeeEE
Confidence 11111111 111111 11223466788999999999999999999999999999999999999998666 79999999
Q ss_pred EEECC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCC
Q psy8748 1830 ISLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN 1908 (2004)
Q Consensus 1830 LafSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~ 1908 (2004)
++|+| |.++|++|+-||.|+||++...+.+. +..-..-|++++|.|||++.++|+.+|.+++|+....+....+....
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99999 88999999999999999998877554 44455889999999999999999999999999998777665552221
Q ss_pred C------CCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEccCCC--CeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1909 K------NSGFTSCAVSSS-GRYIFCGSDDNNVHVWDLLKTTHNGVLSGHEN--RVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1909 ~------~s~ItsLafSPd-G~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~--~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
+ ...|+.+.|.|. ...+++.+.|..|||||.++..++..++|+.. .-....|+.||++|+++++|..|++|
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 1 236999999984 34577778999999999988888888887543 34566899999999999999999999
Q ss_pred ECCCC
Q psy8748 1980 QESNT 1984 (2004)
Q Consensus 1980 dlstg 1984 (2004)
+.+..
T Consensus 574 ~~~~~ 578 (712)
T KOG0283|consen 574 KNDSF 578 (712)
T ss_pred eCCCC
Confidence 98543
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-24 Score=239.52 Aligned_cols=294 Identities=23% Similarity=0.359 Sum_probs=246.7
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC------------C------ceEEEeeCCCCceEEEEEecCC
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT------------G------NKTQVIPLRSAWVMSVAFAQSG 1746 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T------------g------k~l~ti~~Ht~~ItsLafSPdg 1746 (2004)
...+..|++++++-+|++||.++|||+.|..|+|.|++. | -.++++..|...|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 456788999999999999999999999999999999761 1 2456778899999999999999
Q ss_pred CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEe--eccc
Q psy8748 1747 NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEV--AQAH 1823 (2004)
Q Consensus 1747 ~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~i--l~~h 1823 (2004)
..|++|+.|++|++||+.........+. ......+.++.|++++ ++++|+....+++||+++-++.... ...|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~----~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKV----FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHH----hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 9999999999999999976532222222 2335678899999654 5778888899999999998876443 3578
Q ss_pred cCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCC-CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCcee
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF-GHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQI 1901 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~-~h~-s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i 1901 (2004)
.+.|+++.+++.|++.++|+.||.|++||--+++++.++. .|. ..|.+..|..+|+++++.+.|..+++|.+.+++.+
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 8999999999999999999999999999999999988874 454 47899999999999999999999999999999999
Q ss_pred EEEcCCCCCC---CeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeE
Q psy8748 1902 ATYLPPNKNS---GFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTTHNGVL-SGHENRVTSISLSPNGMALVTSSWDQFV 1976 (2004)
Q Consensus 1902 ~t~~~~~~~s---~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge~l~tL-~gHs~~VtsLaFSPDg~~LaSgS~DGtI 1976 (2004)
..+...+..+ --+...|+....|++.-++ .+.+.-||.+++..+..+ .+|.+.+..+.-+|.+..+++|+.|..+
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRA 420 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccccee
Confidence 9986553322 2345667777888777654 578999999998777655 5899999999999999999999999999
Q ss_pred EEEECC
Q psy8748 1977 KVWQES 1982 (2004)
Q Consensus 1977 rIWdls 1982 (2004)
++|--.
T Consensus 421 RFWyrr 426 (430)
T KOG0640|consen 421 RFWYRR 426 (430)
T ss_pred eeeeec
Confidence 999654
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-23 Score=241.99 Aligned_cols=282 Identities=20% Similarity=0.289 Sum_probs=251.9
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
.+|.++...|....++|||.|..+.++|..+++.+..+++|...|+.+.|+++...+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s----- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS----- 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-----
Confidence 578888888887899999999999999999999999999999999999999999999999999999999986532
Q ss_pred eEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeec-cccCCeEEEEECCCCCEEEEEECCCeEEE
Q psy8748 1773 KVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQ-AHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~-~h~~~ItsLafSPdg~~LaSGS~DGsIrI 1850 (2004)
.......|...|+.+..+ .+.++++++.||+..+.|++++..+..... ...-.+++.+|||||..|.+|+.||.++|
T Consensus 295 -~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 295 -EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred -CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 344566788899998887 466899999999999999999998866543 23456899999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1851 WDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1851 WDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
||+.++..+..|.+|.++|..++|+.+|-++++++.|+.|++||+|..+...++..... .++.++.|++.|.++++++.
T Consensus 374 wdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~-~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEK-KEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred EEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccc-ccceeEEEcCCCCeEEeecc
Confidence 99999999999999999999999999999999999999999999999998888876554 47999999999999999988
Q ss_pred CCeEEEEEC--CCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1931 DNNVHVWDL--LKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1931 DGsIrIWDL--~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
|=+|++++- .++.++..+..|.+..+++.|..+..+++++|.|..++++.+
T Consensus 453 ~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 453 DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 777777763 467888888899999999999999999999999999988865
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-23 Score=228.29 Aligned_cols=274 Identities=20% Similarity=0.331 Sum_probs=231.5
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCc
Q psy8748 1553 PCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSS 1632 (2004)
Q Consensus 1553 ~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgS 1632 (2004)
.|.+.|++|+|+.+|.+||+ |+.|+++++|++.. ++..+
T Consensus 18 ~~~~~v~Sv~wn~~g~~las-gs~dktv~v~n~e~-------------~r~~~--------------------------- 56 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLAS-GSFDKTVSVWNLER-------------DRFRK--------------------------- 56 (313)
T ss_pred hhhhcceEEEEcccCceeee-cccCCceEEEEecc-------------hhhhh---------------------------
Confidence 38889999999999999999 99999999999877 11000
Q ss_pred chhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC-CCCEEEEEe
Q psy8748 1633 INIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG-DSRHCVSGS 1711 (2004)
Q Consensus 1633 idi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP-DG~~LASGS 1711 (2004)
....+||++.|-.++|+| ....+++++
T Consensus 57 ----------------------------------------------------~~~~~gh~~svdql~w~~~~~d~~atas 84 (313)
T KOG1407|consen 57 ----------------------------------------------------ELVYRGHTDSVDQLCWDPKHPDLFATAS 84 (313)
T ss_pred ----------------------------------------------------hhcccCCCcchhhheeCCCCCcceEEec
Confidence 113567999999999997 556899999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.|.+|++||+..+++...+....+.| -++|+|+|+++++++.|..|...|.++.+. .. .......+.-+.|.
T Consensus 85 ~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~------~~-~~~~~~e~ne~~w~ 156 (313)
T KOG1407|consen 85 GDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKI------VN-EEQFKFEVNEISWN 156 (313)
T ss_pred CCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccce------ee-hhcccceeeeeeec
Confidence 99999999999999999988766665 478999999999999999999999976432 11 12223344555665
Q ss_pred -CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeE
Q psy8748 1792 -DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVN 1870 (2004)
Q Consensus 1792 -dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~It 1870 (2004)
+++.++.....|.|.|.....-+.+.. +..|.....|+.|+|+|++|++|+.|..+.+||+...-+++.+..+.-+|+
T Consensus 157 ~~nd~Fflt~GlG~v~ILsypsLkpv~s-i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVR 235 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPSLKPVQS-IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVR 235 (313)
T ss_pred CCCCEEEEecCCceEEEEeccccccccc-cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceE
Confidence 555677777779999999887777744 478999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC
Q psy8748 1871 SVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD 1931 (2004)
Q Consensus 1871 sIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD 1931 (2004)
.+.|+.+|++|++|++|..|-|=++.+|..+..+ .+.++...++|+|...+||.+++|
T Consensus 236 TlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI---~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 236 TLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI---PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EEEeccCcceeeccCccceEEeEecccCCeEEEe---eccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999999999999999999988 455678899999999999987764
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=247.99 Aligned_cols=285 Identities=17% Similarity=0.319 Sum_probs=231.2
Q ss_pred cccccccccceeEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1685 KKSLKGHINKVNSVHYSGDS-RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG-~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
+..|.||.++|.|++=+|.. ..+++|+.||.|++||+.+..+..++..|.+.|.++++.. ..++++|.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 56789999999999999977 6899999999999999999999999999999999999985 78899999999999998
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC-CCEEEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD-GQYFVT 1841 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd-g~~LaS 1841 (2004)
+.. ...++.+ ...+..+... .++.++++|. .|.|||......+..+ .-....|.++.|+|. ...|++
T Consensus 137 ~~~-------p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sm-swG~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 137 DGP-------PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSM-SWGADSISSVKFNPVETSILAS 205 (433)
T ss_pred cCC-------cceeeec-cccccccccccccccccccCc--eeeecccccCCcccee-ecCCCceeEEecCCCcchheee
Confidence 652 3344433 2333334333 2345666654 5899999887777554 344567999999995 456777
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCC
Q psy8748 1842 GSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1842 GS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPd 1921 (2004)
++.|+.|.+||++++.+++.+. ....-+.|+|+|.+-.|++|++|..++.||++........ ..+|.+.|..++|+|.
T Consensus 206 ~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v-~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV-HKDHVSAVMDVDFSPT 283 (433)
T ss_pred eccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchh-hcccceeEEEeccCCC
Confidence 7799999999999999887763 3456688999998888999999999999999876554332 2567789999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1922 GRYIFCGSDDNNVHVWDLLKTTHNGVLS-GHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1922 G~~LaSGSsDGsIrIWDL~tge~l~tL~-gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
|+-+++|+.|.+|+||.+..+.-...+. ..-..|.++.|+.|.+++++|++|+.|++|.....
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 9999999999999999997765443331 12356999999999999999999999999998754
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=247.70 Aligned_cols=300 Identities=18% Similarity=0.221 Sum_probs=238.9
Q ss_pred cccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCce----EEEe-eCCCCceEEEEEecCCCEEEEeecC
Q psy8748 1681 KLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK----TQVI-PLRSAWVMSVAFAQSGNFVACGGMD 1755 (2004)
Q Consensus 1681 k~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~----l~ti-~~Ht~~ItsLafSPdg~~LaSGS~D 1755 (2004)
+...-..|++|+..|.++++.|.|-.+++||.|.+|++||+..... .+.+ ......|.++.|++.|..|++.+..
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 4445567899999999999999999999999999999999864321 1222 2345579999999999999999888
Q ss_pred CeEEEEEcCCCCCCC------cceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEee-----cc
Q psy8748 1756 NMCTVYDLNNRDSTG------AAKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEVA-----QA 1822 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~------~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~il-----~~ 1822 (2004)
...+++|-+...... -........||...++|.+|++.+ .|++++.||++++||++..+....++ .+
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 999999976532111 111233456788899999999654 59999999999999998755333332 23
Q ss_pred ccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE---EEEEecCCC--CeEEEEEeCCCCEEEEEECCCeEEEEEccC
Q psy8748 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC---VQTFFGHEA--DVNSVCFHPSGLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1823 h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~---I~tl~~h~s--~ItsIafSPdg~~LaSgS~DGtIrIWDLrt 1897 (2004)
..-.++.++|+++|++|++|+.||.|.+|+...... ...-.+|.. .|+||.|+++|++|++-+.|+++++||++.
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 445689999999999999999999999999764322 233346766 899999999999999999999999999997
Q ss_pred Cce-eEEEcCCCCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEE
Q psy8748 1898 DQQ-IATYLPPNKNSGFTSCAVSSSGRYIFCGSD------DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTS 1970 (2004)
Q Consensus 1898 gk~-i~t~~~~~~~s~ItsLafSPdG~~LaSGSs------DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSg 1970 (2004)
.+. +..+..-.....-+.++|||+.++|++|+. .|.+.+||..+...+..+.-....|..+.|+|.-+.|+.|
T Consensus 396 ~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 396 FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred cccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 654 333333333455678999999999999864 5789999999999999988778899999999999999999
Q ss_pred ECCCeEEEEE
Q psy8748 1971 SWDQFVKVWQ 1980 (2004)
Q Consensus 1971 S~DGtIrIWd 1980 (2004)
+.||.+++|=
T Consensus 476 sgdG~~~vyY 485 (641)
T KOG0772|consen 476 SGDGTAHVYY 485 (641)
T ss_pred cCCCceEEEE
Confidence 9999999973
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-22 Score=227.79 Aligned_cols=292 Identities=22% Similarity=0.356 Sum_probs=247.9
Q ss_pred ccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec--CCeEE
Q psy8748 1682 LMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM--DNMCT 1759 (2004)
Q Consensus 1682 ~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~--DGtIr 1759 (2004)
+++.+.+..-.+.|+++.|+++|.++++++.|.++++||..+|+..+++..+...|..++|....+.++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 4566677778899999999999999999999999999999999999999999889999999888888877776 88999
Q ss_pred EEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCE
Q psy8748 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQY 1838 (2004)
Q Consensus 1760 VWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~ 1838 (2004)
..++.+. +.++-+.||...|..+..++ ++.+++++.|++|++||++..++...+. ...-..++|+|+|-+
T Consensus 84 yLsl~dN------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp~GLi 154 (311)
T KOG1446|consen 84 YLSLHDN------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDPEGLI 154 (311)
T ss_pred EEEeecC------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECCCCcE
Confidence 9999754 78899999999999999985 4679999999999999999877764442 223346789999999
Q ss_pred EEEEECCCeEEEEECCCC--eEEEEEe---cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCe
Q psy8748 1839 FVTGSVDKSCKLWDFREK--KCVQTFF---GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGF 1913 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlrs~--k~I~tl~---~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~I 1913 (2004)
+|++...+.|++||++.- .+..++. +.....+.+.|+|||++++.++..+.+++.|.-+|....++........+
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL 234 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence 999998889999999853 3344443 34677899999999999999999999999999999988888655443322
Q ss_pred -EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1914 -TSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG-HENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1914 -tsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g-Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
...+|+||++++++|+.||+|++|+++++..+..+.+ +.+++.++.|+|.-.++++++ ..+-+|-.+..
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~ 305 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDED 305 (311)
T ss_pred ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecccc
Confidence 5778999999999999999999999999999999988 799999999999877776665 67888876643
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-23 Score=259.17 Aligned_cols=281 Identities=25% Similarity=0.393 Sum_probs=246.9
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE-eeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQV-IPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~t-i~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~ 1769 (2004)
|...|.+..|. +.++++++.|++|.+||..++..+.. +.+|.+.|.++++...++.+++|+.|.++++||..++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--- 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--- 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC---
Confidence 67788899988 66899999999999999999999888 9999999999999888899999999999999998754
Q ss_pred CcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEE
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIr 1849 (2004)
.+...+.+|...+.++... +..+++|+.|.+|++|++.++..+... .+|.+.|.++..+ +.++++|+.||+|+
T Consensus 282 ---~C~~~l~gh~stv~~~~~~-~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 282 ---ECTHSLQGHTSSVRCLTID-PFLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVK 354 (537)
T ss_pred ---cEEEEecCCCceEEEEEcc-CceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec--CCEEEEEecCceEE
Confidence 6778888999998887653 446777899999999999999988544 5699999999998 88999999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCC-ceeEEEcCCCCCCCeEEEEEcCCCCEEEEE
Q psy8748 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRAD-QQIATYLPPNKNSGFTSCAVSSSGRYIFCG 1928 (2004)
Q Consensus 1850 IWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtg-k~i~t~~~~~~~s~ItsLafSPdG~~LaSG 1928 (2004)
+||..+++++.++.+|...|.++.+.+. +++++|+.|++|++||+++. +++..+. +|..-+.. ....+++|+++
T Consensus 355 VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~--~h~~~v~~--l~~~~~~Lvs~ 429 (537)
T KOG0274|consen 355 VWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ--GHTSLVSS--LLLRDNFLVSS 429 (537)
T ss_pred EEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc--CCcccccc--cccccceeEec
Confidence 9999999999999999999999988765 79999999999999999999 7887773 44344433 34468899999
Q ss_pred eCCCeEEEEECCCCeeeEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q psy8748 1929 SDDNNVHVWDLLKTTHNGVLSG-HENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVL 1990 (2004)
Q Consensus 1929 SsDGsIrIWDL~tge~l~tL~g-Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~I 1990 (2004)
+.||+|++||..+++++..+.+ |.+.|+.+++. ...+++++.||.+++||+.++...+.+
T Consensus 430 ~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 430 SADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 9999999999999999999998 67889998886 567999999999999999998765543
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-24 Score=234.01 Aligned_cols=250 Identities=23% Similarity=0.432 Sum_probs=220.6
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
+.++.||.+.|++.+.+.+...-|+++.|-+-+|||.-+|..++.+. |..-|.+++|+.|.++|++|+.+..++|||++
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence 45688999999999999999999999999999999999999998886 77789999999999999999999999999998
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
..+ .....+.+|.+.|..+.|. .+..+++++.|++|++||.+++..+..+. ....|+++.++++|+++.++
T Consensus 131 ~p~-----App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~ilTia- 202 (334)
T KOG0278|consen 131 RPK-----APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGRILTIA- 202 (334)
T ss_pred CCC-----CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCCCEEEEe-
Confidence 754 4456778899999999887 56678888999999999999999987774 45679999999999877665
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC
Q psy8748 1844 VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~ 1923 (2004)
..+.|.+||..+...++.+. ....|.+...+|+...+++|+.|+.++.||..++..+..+ ..+|.++|.|+.|+|+|.
T Consensus 203 ~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 203 YGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred cCceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCc
Confidence 46789999999988887774 4567999999999999999999999999999999998886 357779999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeee
Q psy8748 1924 YIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1924 ~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
..++|+.||+|++|.+..++..
T Consensus 281 ~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eeeccCCCceEEEEEecCCCch
Confidence 9999999999999998665543
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=256.31 Aligned_cols=249 Identities=28% Similarity=0.468 Sum_probs=220.7
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
+.||.+.|++++|..-+.++++|+.|.+++|||..+|++...+.+|.+.|.++... +..+++|+.|.+|++|+++++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~- 321 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG- 321 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCc-
Confidence 67899999999998878899999999999999999999999999999999988875 678888999999999999854
Q ss_pred CCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCe
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGs 1847 (2004)
..+..+.+|.+.|.++... ++.+++|+.||.|++||+.+++++.. +.+|.+.|.++.+... ..+++|+.|+.
T Consensus 322 -----~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~s-l~gH~~~V~sl~~~~~-~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 322 -----ACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKS-LSGHTGRVYSLIVDSE-NRLLSGSLDTT 393 (537)
T ss_pred -----ceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeee-ecCCcceEEEEEecCc-ceEEeeeeccc
Confidence 5667777799999999987 88999999999999999999999854 4679999999988765 89999999999
Q ss_pred EEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEE
Q psy8748 1848 CKLWDFREK-KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIF 1926 (2004)
Q Consensus 1848 IrIWDlrs~-k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~La 1926 (2004)
|++||+++. +++.++.+|..-+.++.+ .++++++++.||+|++||..++++...+... +...+..+++. ...++
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il 468 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEIL 468 (537)
T ss_pred eEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEE
Confidence 999999999 999999999998876665 5679999999999999999999999988654 45678887776 46788
Q ss_pred EEeCCCeEEEEECCCCeeeEEEccCC
Q psy8748 1927 CGSDDNNVHVWDLLKTTHNGVLSGHE 1952 (2004)
Q Consensus 1927 SGSsDGsIrIWDL~tge~l~tL~gHs 1952 (2004)
+++.||.+++||+++++....+-.+.
T Consensus 469 ~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 469 CSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred EEecCCeeEEEecccCchhhhhhhcc
Confidence 99999999999999999888774333
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=245.87 Aligned_cols=273 Identities=18% Similarity=0.281 Sum_probs=227.6
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEee-------------------------------------CCCCceEEEEEecCCCE
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQVIP-------------------------------------LRSAWVMSVAFAQSGNF 1748 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~ti~-------------------------------------~Ht~~ItsLafSPdg~~ 1748 (2004)
.++|++.||+|++||+..+..-..+. .....+++++.+|+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 48999999999999987532111100 11235899999999999
Q ss_pred EEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC----CCcEEEeecCCeEEEEECCCCceeEEeecccc
Q psy8748 1749 VACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID----DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHI 1824 (2004)
Q Consensus 1749 LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd----d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~ 1824 (2004)
|++|..-|.++||++... ........|...|.|+.|+. ...+++++.|..|.+||....-.+...+.+|.
T Consensus 474 LAsGDr~GnlrVy~Lq~l------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS 547 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQEL------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS 547 (1080)
T ss_pred ecccCccCceEEEEehhh------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccc
Confidence 999999999999999753 44556778999999999984 34588999999999999998877777789999
Q ss_pred CCeEEEEECCCC--CEEEEEECCCeEEEEECCCCeEEEEEec-----CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC
Q psy8748 1825 GDVVSISLSPDG--QYFVTGSVDKSCKLWDFREKKCVQTFFG-----HEADVNSVCFHPSGLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1825 ~~ItsLafSPdg--~~LaSGS~DGsIrIWDlrs~k~I~tl~~-----h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt 1897 (2004)
..|+++.|.-.| ..+++++.|..|.+--.+.......+.. ....+..++..|+.+++++++.|..|+|||+.+
T Consensus 548 ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s 627 (1080)
T KOG1408|consen 548 SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES 627 (1080)
T ss_pred cceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccc
Confidence 999999998876 6788999998876543332111122222 235688999999999999999999999999999
Q ss_pred CceeEEEcCC-CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeE
Q psy8748 1898 DQQIATYLPP-NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFV 1976 (2004)
Q Consensus 1898 gk~i~t~~~~-~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtI 1976 (2004)
++....|... .+.+....+..+|.|.|+++.+.|.++.++|..+|+++....||...|+++.|.+|.+.|++.+.||.|
T Consensus 628 gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCI 707 (1080)
T KOG1408|consen 628 GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCI 707 (1080)
T ss_pred cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceE
Confidence 9999999654 344778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCC
Q psy8748 1977 KVWQESNT 1984 (2004)
Q Consensus 1977 rIWdlstg 1984 (2004)
.||.+...
T Consensus 708 FvW~lp~~ 715 (1080)
T KOG1408|consen 708 FVWKLPLT 715 (1080)
T ss_pred EEEECchh
Confidence 99998753
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=234.90 Aligned_cols=307 Identities=20% Similarity=0.309 Sum_probs=243.2
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
..||+++++-+|||||.++|| |+.|-.|+|.|+.. +|. +. .+
T Consensus 109 t~HK~~cR~aafs~DG~lvAT-GsaD~SIKildver--mla---------------ks--------~~------------ 150 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVAT-GSADASIKILDVER--MLA---------------KS--------KP------------ 150 (430)
T ss_pred eecccceeeeeeCCCCcEEEc-cCCcceEEEeehhh--hhh---------------hc--------ch------------
Confidence 349999999999999999999 99999999999965 222 00 00
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
.+. ........-..+++|-.|.+.|+++.|+|....|++|+
T Consensus 151 ------------------------~em---------------~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s 191 (430)
T KOG0640|consen 151 ------------------------KEM---------------ISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS 191 (430)
T ss_pred ------------------------hhh---------------ccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence 000 00000011234778999999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEee--CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeE
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIP--LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR 1789 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~--~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssva 1789 (2004)
.|++|++||+......+.++ ....+|.++.|+|.|.++++|.....+++||+++.++ +.....-.+|.+.|+++.
T Consensus 192 rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc---fvsanPd~qht~ai~~V~ 268 (430)
T KOG0640|consen 192 RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC---FVSANPDDQHTGAITQVR 268 (430)
T ss_pred CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE---eeecCcccccccceeEEE
Confidence 99999999987654333332 3456899999999999999999999999999987542 222224456889999999
Q ss_pred EeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccC-CeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC
Q psy8748 1790 FIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIG-DVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA 1867 (2004)
Q Consensus 1790 fsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~-~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s 1867 (2004)
+++. +..++++.||.|++||--+++++..+...|.+ .|.+..|..+|+++++.+.|..+++|.+.+++++..+.+-..
T Consensus 269 Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~ 348 (430)
T KOG0640|consen 269 YSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGT 348 (430)
T ss_pred ecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCc
Confidence 9965 45788999999999999999999888777765 588899999999999999999999999999999998875421
Q ss_pred -----CeEEEEEeCCCCEEEEEEC-CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1868 -----DVNSVCFHPSGLAFATGSE-DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1868 -----~ItsIafSPdg~~LaSgS~-DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
--+...|+....+++.-.+ .+.+.-||.++......+ ..+|++.+.++.-+|.+.-+++|+.|..+++|--
T Consensus 349 tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~-slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 349 TGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL-SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc-ccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 1233456766777665543 567999999988776555 3578899999999999999999999999999964
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=259.77 Aligned_cols=294 Identities=19% Similarity=0.292 Sum_probs=245.1
Q ss_pred ccccceeEEEEeCCCCEEEEEe--CCCeEEEEECCC------------CceEEEeeCCCCceEEEEEecCCCEEEEeecC
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGS--LDGKLIIWDTWT------------GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD 1755 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS--~DGtIrVWDl~T------------gk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D 1755 (2004)
.+...|.+++.+|||..++||| .||.++||+... .+.+.....|.+.|.|+.|++||.+|++|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3456799999999999999999 899999997542 23345567899999999999999999999999
Q ss_pred CeEEEEEcCCC------------CCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeecc
Q psy8748 1756 NMCTVYDLNNR------------DSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQA 1822 (2004)
Q Consensus 1756 GtIrVWDl~t~------------~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~ 1822 (2004)
+.|.+|+.... ......+....+.+|...|..+.|+++ .++++++.|+.|.+||..+.+.+ +.+.+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~-~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL-KVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee-eeeec
Confidence 99999998731 112345678889999999999999965 46889999999999999999555 67789
Q ss_pred ccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC------CCeEEEEEeCCCCEEEEEEC----CCeEEE
Q psy8748 1823 HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE------ADVNSVCFHPSGLAFATGSE----DKTARL 1892 (2004)
Q Consensus 1823 h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~------s~ItsIafSPdg~~LaSgS~----DGtIrI 1892 (2004)
|.+.|..+.|+|-|++|++-+.|++|+||++.+....+.+.++- ..+..+.|+|||.+|++... -..+.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 99999999999999999999999999999988877777775543 35788999999999998643 336888
Q ss_pred EEccCCceeEEEcCCCCCCCeEEEEEcCC-----CC------------EEEEEeCCCeEEEEECCCCeeeEEEc-cCCCC
Q psy8748 1893 FDIRADQQIATYLPPNKNSGFTSCAVSSS-----GR------------YIFCGSDDNNVHVWDLLKTTHNGVLS-GHENR 1954 (2004)
Q Consensus 1893 WDLrtgk~i~t~~~~~~~s~ItsLafSPd-----G~------------~LaSGSsDGsIrIWDL~tge~l~tL~-gHs~~ 1954 (2004)
.+-.+.+.-..+ -+|..++.+++|+|. .+ .+|+|+.|++|-||.....+++.... -....
T Consensus 250 ieR~tWk~~~~L--vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 250 IERGTWKVDKDL--VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred EecCCceeeeee--ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 888777766666 466679999999982 11 67899999999999998777776553 24678
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1955 VTSISLSPNGMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1955 VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
|.+++|+|||..|+.|+.||+|.++.++..+.
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 99999999999999999999999999987543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-22 Score=249.95 Aligned_cols=299 Identities=14% Similarity=0.188 Sum_probs=228.1
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceE-------------EEeeCCCCceEEEEEec-CCCEEEEeecCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKT-------------QVIPLRSAWVMSVAFAQ-SGNFVACGGMDN 1756 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l-------------~ti~~Ht~~ItsLafSP-dg~~LaSGS~DG 1756 (2004)
|-..|+....++|+..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.||
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4556677777778777777777777777775443222 13678999999999999 889999999999
Q ss_pred eEEEEEcCCCCCC-CcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEEC
Q psy8748 1757 MCTVYDLNNRDST-GAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLS 1833 (2004)
Q Consensus 1757 tIrVWDl~t~~~~-~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafS 1833 (2004)
.|++|++...... ........+.+|...|.++.|++. +.+++++.|+.|++||+.+++... .+.+|...|.+++|+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~-~l~~h~~~V~sla~s 177 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE-VIKCHSDQITSLEWN 177 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE-EEcCCCCceEEEEEE
Confidence 9999999764311 122346678899999999999964 479999999999999999987764 446788999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC-eEEEEEeCCCCEEEEEE----CCCeEEEEEccCCceeEEEcCCC
Q psy8748 1834 PDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEAD-VNSVCFHPSGLAFATGS----EDKTARLFDIRADQQIATYLPPN 1908 (2004)
Q Consensus 1834 Pdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~-ItsIafSPdg~~LaSgS----~DGtIrIWDLrtgk~i~t~~~~~ 1908 (2004)
|+|++|++++.||.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++...........
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d 257 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD 257 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence 99999999999999999999999999888888765 45678999888877654 47899999998765443332223
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1909 KNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVLSG-HENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1909 ~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL~g-Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
....+....|+++++++++|+ .||.|++||+.+++....... +..++.+++|.|....=+ ..--..|+|.+....
T Consensus 258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv--~~~Ei~r~~~l~~~~- 334 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDT--RKCEIARFYALTYHS- 334 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccccccc--cceeeeEEEEecCCe-
Confidence 334566778999999999887 599999999999988776543 456788999988532211 112245777776543
Q ss_pred EEEEEee
Q psy8748 1987 WKVLKVY 1993 (2004)
Q Consensus 1987 ~k~Ik~~ 1993 (2004)
++.+...
T Consensus 335 i~pis~~ 341 (493)
T PTZ00421 335 LYTIQML 341 (493)
T ss_pred EEEEEEE
Confidence 4555543
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=242.40 Aligned_cols=280 Identities=24% Similarity=0.351 Sum_probs=239.6
Q ss_pred cccceeEEEEeCCCCE-EEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRH-CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~-LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~ 1769 (2004)
-.+.|.+++|+|...+ +|+.+ .-.+.+|+..+......+......|++++|..||+++++|+..|.|++||+.+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~---- 99 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS---- 99 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----
Confidence 3478999999996553 44443 35799999888888887888888899999999999999999999999999653
Q ss_pred CcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC-CCEEEEEECCC
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD-GQYFVTGSVDK 1846 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd-g~~LaSGS~DG 1846 (2004)
....+.+.+|..++....|++ +..+++|++|+.+++||+.+... .....+|.+.|.|.+|+|. +..+++|+.||
T Consensus 100 --r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg 176 (487)
T KOG0310|consen 100 --RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDG 176 (487)
T ss_pred --HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCc
Confidence 346677889999999999984 45688899999999999999885 4567899999999999995 55899999999
Q ss_pred eEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEE
Q psy8748 1847 SCKLWDFREK-KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1847 sIrIWDlrs~-k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~L 1925 (2004)
.|++||.+.. ..+..+ .|..+|..+.+-|.|..+++++ ...|++||+.+|....... ..|...|+|+++..++..|
T Consensus 177 ~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~-~~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 177 KVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSM-FNHNKTVTCLRLASDSTRL 253 (487)
T ss_pred eEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhh-hcccceEEEEEeecCCceE
Confidence 9999999987 555555 7999999999999999999987 5689999999776654443 2377899999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1926 FCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1926 aSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
++|+-||.|++||+.+.+.+..+. -.++|.+++.+|+++.++.|..||.+.+=+..
T Consensus 254 lS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 254 LSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhh
Confidence 999999999999999999988886 57899999999999999999999998877443
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=244.83 Aligned_cols=303 Identities=17% Similarity=0.257 Sum_probs=230.4
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC-C-----------------------CCceEEEEEecCCCE
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL-R-----------------------SAWVMSVAFAQSGNF 1748 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~-H-----------------------t~~ItsLafSPdg~~ 1748 (2004)
..-+||+.+ .+++++|+.+|.|++|+..+-....+++. | -....++.|++....
T Consensus 261 TnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~k 338 (1080)
T KOG1408|consen 261 TNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDK 338 (1080)
T ss_pred cccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCce
Confidence 344567765 67999999999999998776544433321 0 012346789999999
Q ss_pred EEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe------------CCCcEEEeecCCeEEEEECCCCc--
Q psy8748 1749 VACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI------------DDTTLLTGSGDMKIVTWNLETGQ-- 1814 (2004)
Q Consensus 1749 LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs------------dd~~LlSgS~DGtI~IWDl~tg~-- 1814 (2004)
+.+...|..++|||++... ..........|...|+.+.-. +.+.|++++.||+|++||+..+.
T Consensus 339 lscVYndhSlYvWDvrD~~---kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn 415 (1080)
T KOG1408|consen 339 LSCVYNDHSLYVWDVRDVN---KVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNN 415 (1080)
T ss_pred EEEEEcCceEEEEeccccc---cccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccccc
Confidence 9999999999999998654 222334445566666655433 34569999999999999987521
Q ss_pred -eeEE---------e------------------------eccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEE
Q psy8748 1815 -RIHE---------V------------------------AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1815 -~i~~---------i------------------------l~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~ 1860 (2004)
..++ + ..+....+.+++++|+|++|++|...|++++||+...+...
T Consensus 416 ~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~ 495 (1080)
T KOG1408|consen 416 QVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC 495 (1080)
T ss_pred ceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh
Confidence 1000 0 01223468999999999999999999999999999988888
Q ss_pred EEecCCCCeEEEEEeC---CCCEEEEEECCCeEEEEEccCCcee-E------------EE--------------------
Q psy8748 1861 TFFGHEADVNSVCFHP---SGLAFATGSEDKTARLFDIRADQQI-A------------TY-------------------- 1904 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSP---dg~~LaSgS~DGtIrIWDLrtgk~i-~------------t~-------------------- 1904 (2004)
.+.+|+..|.|+.|+. ..++|++++.|.-|+|||....-.+ . +|
T Consensus 496 ~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF 575 (1080)
T KOG1408|consen 496 FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF 575 (1080)
T ss_pred heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe
Confidence 8999999999999986 3467999999999999997421110 0 00
Q ss_pred ------------cCC---CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc---CCCCeEEEEEcCCCCE
Q psy8748 1905 ------------LPP---NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG---HENRVTSISLSPNGMA 1966 (2004)
Q Consensus 1905 ------------~~~---~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g---Hs~~VtsLaFSPDg~~ 1966 (2004)
... -....+..++..|..+++++++.|..|+|||+.+|+..+.+++ |.+....+...|.|.|
T Consensus 576 r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY 655 (1080)
T KOG1408|consen 576 RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY 655 (1080)
T ss_pred ehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE
Confidence 000 0123466788999999999999999999999999999999975 7788999999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1967 LVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1967 LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
+++...|.++.++|+.+|++ +..+.+|...|+.+
T Consensus 656 ~atScsdktl~~~Df~sgEc---vA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 656 LATSCSDKTLCFVDFVSGEC---VAQMTGHSEAVTGV 689 (1080)
T ss_pred EEEeecCCceEEEEeccchh---hhhhcCcchheeee
Confidence 99999999999999999854 55666788777754
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-23 Score=230.36 Aligned_cols=300 Identities=25% Similarity=0.408 Sum_probs=253.1
Q ss_pred ccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEE
Q psy8748 1680 VKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCT 1759 (2004)
Q Consensus 1680 lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIr 1759 (2004)
..+...+.+.||.++|+.++.......+.+++.|.+-+||.+++|+++..+.+|.+.|+++.|++.+.++++++.|++-.
T Consensus 136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence 46677889999999999999988777899999999999999999999999999999999999999999999999999999
Q ss_pred EEEc------CCCCC------------------------C----CcceEEEEEecCccceeeeEEe-CCCcEEEeecCCe
Q psy8748 1760 VYDL------NNRDS------------------------T----GAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMK 1804 (2004)
Q Consensus 1760 VWDl------~t~~~------------------------~----~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGt 1804 (2004)
||.. ..... . .....+..+.+|...+.++.|. .+..+++++.|.+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence 9972 11000 0 0112345677899999999997 5567999999999
Q ss_pred EEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEE
Q psy8748 1805 IVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK-KCVQTFFGHEADVNSVCFHPSGLAFAT 1883 (2004)
Q Consensus 1805 I~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~-k~I~tl~~h~s~ItsIafSPdg~~LaS 1883 (2004)
-.+||+++|..+ ..+.+|....+.++-+|..+++++++.|.+.++||++.. ..+..|.+|...|+++.|..+. .+++
T Consensus 296 AnlwDVEtge~v-~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVS 373 (481)
T KOG0300|consen 296 ANLWDVETGEVV-NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVS 373 (481)
T ss_pred ceeeeeccCcee-ccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceee
Confidence 999999999988 566899999999999999999999999999999999854 4577899999999999998765 5889
Q ss_pred EECCCeEEEEEccCCce-eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee----EEEccCCCCeEEE
Q psy8748 1884 GSEDKTARLFDIRADQQ-IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN----GVLSGHENRVTSI 1958 (2004)
Q Consensus 1884 gS~DGtIrIWDLrtgk~-i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l----~tL~gHs~~VtsL 1958 (2004)
|+.|.+|++||+++.+. +.++ ....++..++++..+..|+.-.++..|++||+...... ..-++|..-|+|+
T Consensus 374 gSDDrTvKvWdLrNMRsplATI---RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRSPLATI---RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred cCCCceEEEeeeccccCcceee---ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeee
Confidence 99999999999987654 3444 23467889999998899999999999999998543322 1235899999999
Q ss_pred EEcCCC--CEEEEEECCCeEEEEECCCC
Q psy8748 1959 SLSPNG--MALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1959 aFSPDg--~~LaSgS~DGtIrIWdlstg 1984 (2004)
+|..+. .-|++||.|..+.-|++...
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eccccCcccccccccccceeeeeEeccc
Confidence 997543 45899999999999998764
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-23 Score=242.36 Aligned_cols=284 Identities=22% Similarity=0.334 Sum_probs=239.9
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..-|.++|+.+.|-++..+||+ |+.|..|++|++.. .+
T Consensus 171 ld~h~gev~~v~~l~~sdtlat-gg~Dr~Ik~W~v~~-------------~k---------------------------- 208 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLAT-GGSDRIIKLWNVLG-------------EK---------------------------- 208 (459)
T ss_pred hhccccccceeEEccCcchhhh-cchhhhhhhhhccc-------------ch----------------------------
Confidence 3448889999999999999999 99999999999866 00
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
...+.+|.|-.++|+++.|.+++++++++
T Consensus 209 ---------------------------------------------------~~~~~tLaGs~g~it~~d~d~~~~~~iAa 237 (459)
T KOG0288|consen 209 ---------------------------------------------------SELISTLAGSLGNITSIDFDSDNKHVIAA 237 (459)
T ss_pred ---------------------------------------------------hhhhhhhhccCCCcceeeecCCCceEEee
Confidence 00234566777899999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE
Q psy8748 1711 SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf 1790 (2004)
+.|+.+++|++.+++...++.+|.+.|+++.|......+++|+.|.+|+.||+.... +.++... ...+..+..
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~------C~kt~l~-~S~cnDI~~ 310 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY------CSKTVLP-GSQCNDIVC 310 (459)
T ss_pred cCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh------eeccccc-cccccceEe
Confidence 999999999999999999999999999999998877779999999999999997643 2222211 112222222
Q ss_pred eCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecC----C
Q psy8748 1791 IDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH----E 1866 (2004)
Q Consensus 1791 sdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h----~ 1866 (2004)
. ...+++|-.|+.|++||+++......+ ...+.|+++..+++|..+.+++.|.++.++|+++.+....+.+. .
T Consensus 311 ~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv--~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a 387 (459)
T KOG0288|consen 311 S-ISDVISGHFDKKVRFWDIRSADKTRSV--PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA 387 (459)
T ss_pred c-ceeeeecccccceEEEeccCCceeeEe--ecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccc
Confidence 2 446788999999999999999887665 34458999999999999999999999999999999887777543 2
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy8748 1867 ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVW 1937 (2004)
Q Consensus 1867 s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIW 1937 (2004)
...+.+.|+|++.|+++|+.||.|+||++.++++............|++++|+|.|..+++++.++.+.+|
T Consensus 388 sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 388 SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 35889999999999999999999999999999999888776666689999999999999999999999999
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-23 Score=248.84 Aligned_cols=298 Identities=17% Similarity=0.328 Sum_probs=236.7
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC--ceEEEeeCCCCceEEEEE-ecCCCEEEEeecCCeEEEE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG--NKTQVIPLRSAWVMSVAF-AQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg--k~l~ti~~Ht~~ItsLaf-SPdg~~LaSGS~DGtIrVW 1761 (2004)
...+..|.+.|++++...+|+.|++++.|-+|++|+...+ -+..++..|.+.|.|+++ .++...+++||-|+.|.+|
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflW 145 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLW 145 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEE
Confidence 3456679999999999999999999999999999999887 577788899999999999 7788899999999999999
Q ss_pred EcCCCCC--CCcc--eEEEEEe-cCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC
Q psy8748 1762 DLNNRDS--TGAA--KVIRELL-GYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD 1835 (2004)
Q Consensus 1762 Dl~t~~~--~~~~--k~i~sl~-gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd 1835 (2004)
|++.+.. .... .....+. |+...+.+++..+.+ .+++|+..+.+++||.++++.+.++ .+|...|.++..++|
T Consensus 146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkL-rGHTdNVr~ll~~dD 224 (735)
T KOG0308|consen 146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKL-RGHTDNVRVLLVNDD 224 (735)
T ss_pred EccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeee-eccccceEEEEEcCC
Confidence 9997632 1111 1112222 677788888877554 5778889999999999999988666 499999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEE
Q psy8748 1836 GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTS 1915 (2004)
Q Consensus 1836 g~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~Its 1915 (2004)
|+.+++++.||+|++||+...+++.++..|...|+++..+|+-.++++|+.||.|..=|+++......+... ..++..
T Consensus 225 Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~ 302 (735)
T KOG0308|consen 225 GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLK 302 (735)
T ss_pred CCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhh
Confidence 999999999999999999999999999999999999999999999999999999999999985333222212 245666
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCe-------eeEEEc---c--------------CCCCeEEEEEcCCCCEEEEEE
Q psy8748 1916 CAVSSSGRYIFCGSDDNNVHVWDLLKTT-------HNGVLS---G--------------HENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1916 LafSPdG~~LaSGSsDGsIrIWDL~tge-------~l~tL~---g--------------Hs~~VtsLaFSPDg~~LaSgS 1971 (2004)
+..+.+.+-+-+++.|+.|+-|...-.. +..... . ....|..-+.-.|.++++|-.
T Consensus 303 l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkD 382 (735)
T KOG0308|consen 303 LHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKD 382 (735)
T ss_pred hhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeec
Confidence 7777655555777889999999753211 111000 0 112344445556888999999
Q ss_pred CCCeEEEEECCCCe
Q psy8748 1972 WDQFVKVWQESNTI 1985 (2004)
Q Consensus 1972 ~DGtIrIWdlstg~ 1985 (2004)
.+|.+.+||+-...
T Consensus 383 a~gnv~lwDIl~~~ 396 (735)
T KOG0308|consen 383 AKGNVALWDILACV 396 (735)
T ss_pred CCCCEEEEEeeeee
Confidence 99999999998754
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=239.82 Aligned_cols=290 Identities=23% Similarity=0.329 Sum_probs=224.2
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
|+..|.++++.|.|-+++| |+.|.+|+.||.+. ++...+.++.+
T Consensus 166 gtk~Vsal~~Dp~GaR~~s-Gs~Dy~v~~wDf~g---------Mdas~~~fr~l-------------------------- 209 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVS-GSLDYTVKFWDFQG---------MDASMRSFRQL-------------------------- 209 (641)
T ss_pred CceEEEEeeecCCCceeee-ccccceEEEEeccc---------ccccchhhhcc--------------------------
Confidence 6667999999999999999 99999999999987 11111101000
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCC
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLD 1713 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~D 1713 (2004)
...-...|+++.|++.|..|++.+..
T Consensus 210 ------------------------------------------------------~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 210 ------------------------------------------------------QPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred ------------------------------------------------------CcccccccceeeecCCCCeEEEEecC
Confidence 01133579999999999988888878
Q ss_pred CeEEEEECCCCceEEE-------------eeCCCCceEEEEEecCC-CEEEEeecCCeEEEEEcCCCCCCCcceEEEE--
Q psy8748 1714 GKLIIWDTWTGNKTQV-------------IPLRSAWVMSVAFAQSG-NFVACGGMDNMCTVYDLNNRDSTGAAKVIRE-- 1777 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~t-------------i~~Ht~~ItsLafSPdg-~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~s-- 1777 (2004)
...+|+|- .|..+.. .++|...++|.+|+|+. ..+++++.||++++|++++... ..++++.
T Consensus 236 aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~--q~qVik~k~ 312 (641)
T KOG0772|consen 236 AQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS--QLQVIKTKP 312 (641)
T ss_pred cceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh--heeEEeecc
Confidence 89999984 4433222 25789999999999965 5889999999999999987542 2222222
Q ss_pred EecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCC--ceeEEeeccccC--CeEEEEECCCCCEEEEEECCCeEEEEE
Q psy8748 1778 LLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETG--QRIHEVAQAHIG--DVVSISLSPDGQYFVTGSVDKSCKLWD 1852 (2004)
Q Consensus 1778 l~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg--~~i~~il~~h~~--~ItsLafSPdg~~LaSGS~DGsIrIWD 1852 (2004)
..+..-.++.|+|+.+ ..+++|+.||.|.+|+.... .....+...|.. .|+|+.|+++|++|++-+.|+++++||
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 2344557788999855 55888999999999997543 233445667877 899999999999999999999999999
Q ss_pred CCCCe-EEEEEecC--CCCeEEEEEeCCCCEEEEEEC------CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC
Q psy8748 1853 FREKK-CVQTFFGH--EADVNSVCFHPSGLAFATGSE------DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1853 lrs~k-~I~tl~~h--~s~ItsIafSPdg~~LaSgS~------DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~ 1923 (2004)
+++.+ ++....+. ..+-+.++|+|+.++|++|+. .|++.+||..+...+.++... ...|..+.|+|.-+
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--TASVVRCLWHPKLN 470 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--CceEEEEeecchhh
Confidence 99754 44444332 345678899999999999874 578999999999998888554 46789999999999
Q ss_pred EEEEEeCCCeEEEEE
Q psy8748 1924 YIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1924 ~LaSGSsDGsIrIWD 1938 (2004)
.|++|+.||.+++|=
T Consensus 471 Qi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 471 QIFAGSGDGTAHVYY 485 (641)
T ss_pred heeeecCCCceEEEE
Confidence 999999999999873
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-22 Score=220.20 Aligned_cols=291 Identities=21% Similarity=0.303 Sum_probs=239.1
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCc
Q psy8748 1553 PCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSS 1632 (2004)
Q Consensus 1553 ~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgS 1632 (2004)
+|..++|.+.|+.+|.+|+| ++.|.+..||--.. |+
T Consensus 8 GHERplTqiKyN~eGDLlFs-caKD~~~~vw~s~n-------------Ge------------------------------ 43 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFS-CAKDSTPTVWYSLN-------------GE------------------------------ 43 (327)
T ss_pred cCccccceEEecCCCcEEEE-ecCCCCceEEEecC-------------Cc------------------------------
Confidence 47778999999999999999 99999999997644 11
Q ss_pred chhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeC
Q psy8748 1633 INIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSL 1712 (2004)
Q Consensus 1633 idi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~ 1712 (2004)
.+-++.||++.|+|++.+-+.++++||+.
T Consensus 44 ---------------------------------------------------rlGty~GHtGavW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 44 ---------------------------------------------------RLGTYDGHTGAVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred ---------------------------------------------------eeeeecCCCceEEEEEecCCcceeeeccc
Confidence 23457789999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec-----CCeEEEEEcCCCCCC-CcceEEEEEecCcccee
Q psy8748 1713 DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM-----DNMCTVYDLNNRDST-GAAKVIRELLGYEGFLS 1786 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~-----DGtIrVWDl~t~~~~-~~~k~i~sl~gh~~~Vs 1786 (2004)
|.++++||+++|+.+..++. ..+|..+.|+++|++++.... .+.|.++|++..... ....+...+..+...++
T Consensus 73 D~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred cceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 99999999999999999884 567999999999998887654 478999999864422 23344666777778888
Q ss_pred eeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecC
Q psy8748 1787 SCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH 1865 (2004)
Q Consensus 1787 svafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h 1865 (2004)
.+.|.+ +..+++|..||.|.+||.++|.........|...|+.++++++..++++++.|.+-++||.++-+.++++. .
T Consensus 152 ~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-t 230 (327)
T KOG0643|consen 152 SALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-T 230 (327)
T ss_pred eeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-e
Confidence 888885 55689999999999999999988878778899999999999999999999999999999999999988885 4
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCe--EEEEEccCCceeEEE----------cCCCCCCCeEEEEEcCCCCEEEEEeCCCe
Q psy8748 1866 EADVNSVCFHPSGLAFATGSEDKT--ARLFDIRADQQIATY----------LPPNKNSGFTSCAVSSSGRYIFCGSDDNN 1933 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSgS~DGt--IrIWDLrtgk~i~t~----------~~~~~~s~ItsLafSPdG~~LaSGSsDGs 1933 (2004)
..+|++.+++|...+++.|+.... |.-=+.+.|+....| ...+|-++|++++|+|+|+..++|+.||.
T Consensus 231 e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 231 ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence 789999999998777777654322 222222333222221 22577899999999999999999999999
Q ss_pred EEEEECC
Q psy8748 1934 VHVWDLL 1940 (2004)
Q Consensus 1934 IrIWDL~ 1940 (2004)
|++.-..
T Consensus 311 VR~h~Fd 317 (327)
T KOG0643|consen 311 VRLHHFD 317 (327)
T ss_pred EEEEEec
Confidence 9998653
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=243.18 Aligned_cols=375 Identities=17% Similarity=0.254 Sum_probs=283.9
Q ss_pred eEEEEEccC--CCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCcccccccc--CCCCcc
Q psy8748 1558 RNAVSFHAC--STLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMM--KPTSSI 1633 (2004)
Q Consensus 1558 VtsVsFSPd--Gk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~--spdgSi 1633 (2004)
|+++ +||. -+.+.. |+.+|.+.+|++.+ ++.+.++++...++.+-.+...=++.. ..+|.+
T Consensus 162 Ital-~HP~TYLNKIvv-Gs~~G~lql~Nvrt-------------~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~V 226 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVV-GSSQGRLQLWNVRT-------------GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTV 226 (910)
T ss_pred eeeE-ecchhheeeEEE-eecCCcEEEEEecc-------------CcEEEEecccccceeEeccCCcceEEEEeccCceE
Confidence 6655 5665 223444 99999999999999 788888887777666644322211100 001110
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCE-EEEEeC
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRH-CVSGSL 1712 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~-LASGS~ 1712 (2004)
-+ -+.. .-+.+.+++.-.++|++++|.-||.. +|+|+.
T Consensus 227 ii------------------------------------fNlK-----~dkil~sFk~d~g~VtslSFrtDG~p~las~~~ 265 (910)
T KOG1539|consen 227 II------------------------------------FNLK-----FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS 265 (910)
T ss_pred EE------------------------------------EEcc-----cCcEEEEEEccccceeEEEeccCCCeeEEeccC
Confidence 00 0000 11224445544699999999999984 677777
Q ss_pred CCeEEEEECCCCceEEEee-CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1713 DGKLIIWDTWTGNKTQVIP-LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~ti~-~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.|.+.+||++..+.+.... .|.+.|....|.+....+++++.|..+++|-.++++. ..+..+...||..+..++.|.
T Consensus 266 ~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg--~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 266 NGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDG--VPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred CceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCC--cchheeeccCCCCCchheeee
Confidence 8999999999988877765 7989999999999999999999999999998885542 245555666677776666665
Q ss_pred --CCCcEEEeecCCeEEEE-------------------------------------------------------------
Q psy8748 1792 --DDTTLLTGSGDMKIVTW------------------------------------------------------------- 1808 (2004)
Q Consensus 1792 --dd~~LlSgS~DGtI~IW------------------------------------------------------------- 1808 (2004)
.+..+++++.|++.+.+
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 22335555555544444
Q ss_pred ----ECCCCceeEEee-----ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEeC
Q psy8748 1809 ----NLETGQRIHEVA-----QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF---FGHEADVNSVCFHP 1876 (2004)
Q Consensus 1809 ----Dl~tg~~i~~il-----~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl---~~h~s~ItsIafSP 1876 (2004)
+.+....-...+ +.....+++++.++.|++.+.|+..|.|-+|++.+|-....+ ..|.++|++++...
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG 503 (910)
T ss_pred EEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC
Confidence 333222111111 112356889999999999999999999999999999888888 58999999999999
Q ss_pred CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeE
Q psy8748 1877 SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVT 1956 (2004)
Q Consensus 1877 dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~Vt 1956 (2004)
-++.+++++.+|.+.+||..+......+. -...+.++..+.....++++.+|-.|+++|+.+.+.++.+.+|.+.|+
T Consensus 504 ~n~~~vsa~~~Gilkfw~f~~k~l~~~l~---l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nrit 580 (910)
T KOG1539|consen 504 TNRLLVSAGADGILKFWDFKKKVLKKSLR---LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRIT 580 (910)
T ss_pred CCceEEEccCcceEEEEecCCcceeeeec---cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccccee
Confidence 99999999999999999999887666663 335688888998889999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEee
Q psy8748 1957 SISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVY 1993 (2004)
Q Consensus 1957 sLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~ 1993 (2004)
+++|||||++|++++.|++|++||+.++.++..+..-
T Consensus 581 d~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 581 DMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred eeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence 9999999999999999999999999999877766543
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-23 Score=231.16 Aligned_cols=259 Identities=20% Similarity=0.341 Sum_probs=227.5
Q ss_pred CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc--ceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEE
Q psy8748 1733 RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA--AKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWN 1809 (2004)
Q Consensus 1733 Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~--~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWD 1809 (2004)
....+.|..|+|||+++++|+.||.|.+|++.+++.... ......+.-+...+.|+.|+.+ ..+++|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 455688999999999999999999999999987753322 2233455667889999999954 5689999999999999
Q ss_pred CCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCe
Q psy8748 1810 LETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKT 1889 (2004)
Q Consensus 1810 l~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGt 1889 (2004)
+.+|.++.++-..|...|+|+.|+.|+..+++++.|.++++.-+++|++++.+++|.+.|+...|.++|.++++++.||+
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT 371 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence 99999998888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCceeEEEcCCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEcc---CCCCeEEEEEcCCCC
Q psy8748 1890 ARLFDIRADQQIATYLPPNKNSGFTSCAVSS-SGRYIFCGSDDNNVHVWDLLKTTHNGVLSG---HENRVTSISLSPNGM 1965 (2004)
Q Consensus 1890 IrIWDLrtgk~i~t~~~~~~~s~ItsLafSP-dG~~LaSGSsDGsIrIWDL~tge~l~tL~g---Hs~~VtsLaFSPDg~ 1965 (2004)
|++|+.++..+..++...+...+|..+..-| +...++++...++|+|.++ .|+.++.+.. ..+...+.+.+|.|.
T Consensus 372 vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 372 VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGE 450 (508)
T ss_pred EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCc
Confidence 9999999999999998888888899988888 4568888889999999997 6777777743 345677788999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1966 ALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1966 ~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
++++.+.|+.++.|...+|+.-+.+.+
T Consensus 451 wiYcigED~vlYCF~~~sG~LE~tl~V 477 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGKLERTLPV 477 (508)
T ss_pred EEEEEccCcEEEEEEeecCceeeeeec
Confidence 999999999999999999976554443
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=224.80 Aligned_cols=279 Identities=20% Similarity=0.282 Sum_probs=228.7
Q ss_pred eEEEEeC-CCCEEEEE-------eCCCeEEEEECCCCceEEEeeC--CCCceEEEEEecC-CCEEEEeecCCeEEEEEcC
Q psy8748 1696 NSVHYSG-DSRHCVSG-------SLDGKLIIWDTWTGNKTQVIPL--RSAWVMSVAFAQS-GNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1696 tsLaFSP-DG~~LASG-------S~DGtIrVWDl~Tgk~l~ti~~--Ht~~ItsLafSPd-g~~LaSGS~DGtIrVWDl~ 1764 (2004)
.++.||| -.++||.+ ...|++.|.++..++.+..... -.+.+..++|+++ .+.+++++.||.+++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4788888 22233332 1258999999876555544432 3567999999985 5688899999999999964
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC-CCCEEEE
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP-DGQYFVT 1841 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP-dg~~LaS 1841 (2004)
. ...++..++.|...|.++.|.. ...+++++.||+|++|+...++.+.+ +.+|...|...+|+| .++.+++
T Consensus 92 ~-----~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T-f~gh~~~Iy~a~~sp~~~nlfas 165 (311)
T KOG0277|consen 92 M-----PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT-FNGHNSCIYQAAFSPHIPNLFAS 165 (311)
T ss_pred C-----CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe-ecCCccEEEEEecCCCCCCeEEE
Confidence 3 3457788889999999999984 44588889999999999999888855 578999999999999 6789999
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC
Q psy8748 1842 GSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1842 GS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP 1920 (2004)
++.||.+++||++.......+..|...|.|+.|+. +.+.+++|+.|+.|++||+++-+.. .+...+|.-.|..+.|||
T Consensus 166 ~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p-l~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 166 ASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP-LFELNGHGLAVRKVKFSP 244 (311)
T ss_pred ccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc-ceeecCCceEEEEEecCc
Confidence 99999999999986555555889999999999998 6778999999999999999976643 233367788999999999
Q ss_pred C-CCEEEEEeCCCeEEEEECCC-CeeeEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEC
Q psy8748 1921 S-GRYIFCGSDDNNVHVWDLLK-TTHNGVLSGHENRVTSISLSP-NGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1921 d-G~~LaSGSsDGsIrIWDL~t-ge~l~tL~gHs~~VtsLaFSP-Dg~~LaSgS~DGtIrIWdl 1981 (2004)
. ...|++++.|-+++|||... ...+.+...|+.-|.++.|++ ++.++|++|.|+.++||+.
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 4 56889999999999999874 445666778999999999987 6778999999999999984
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-22 Score=254.15 Aligned_cols=251 Identities=18% Similarity=0.279 Sum_probs=209.3
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC-------C-----------ceEEEeeCCCCceEEEEEecC
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT-------G-----------NKTQVIPLRSAWVMSVAFAQS 1745 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T-------g-----------k~l~ti~~Ht~~ItsLafSPd 1745 (2004)
.+..+..|.+.|+|+.|+|||++||+|++|+.|.||+... | +....+.+|...|..++|+|+
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 3556778999999999999999999999999999998662 1 245677899999999999999
Q ss_pred CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeecc--
Q psy8748 1746 GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQA-- 1822 (2004)
Q Consensus 1746 g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~-- 1822 (2004)
+.++++++.|++|.+|+..+ +.....+.+|.+.|..+.|.+- .++++-+.|++|++|+..+....+.+...
T Consensus 141 ~~~lvS~s~DnsViiwn~~t------F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKT------FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred ccEEEEecccceEEEEcccc------ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh
Confidence 99999999999999999874 4778899999999999999964 56888899999999998775555444222
Q ss_pred ---ccCCeEEEEECCCCCEEEEEEC----CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC-----CC-----------
Q psy8748 1823 ---HIGDVVSISLSPDGQYFVTGSV----DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPS-----GL----------- 1879 (2004)
Q Consensus 1823 ---h~~~ItsLafSPdg~~LaSGS~----DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPd-----g~----------- 1879 (2004)
....+..+.|+|||.+|++... -.++.|.+-.+.+.-..+.+|..++.++.|+|. .+
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y 294 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY 294 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence 2234778999999999998642 236999998888888899999999999999981 11
Q ss_pred -EEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1880 -AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1880 -~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
.+++|+.|+.|.||.....+++.... .-....|..++|+|||..|++++.||+|.++.+..
T Consensus 295 ~i~AvgSqDrSlSVW~T~~~RPl~vi~-~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 295 CIAAVGSQDRSLSVWNTALPRPLFVIH-NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EEEEEecCCccEEEEecCCCCchhhhh-hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 57899999999999987666654442 22346799999999999999999999999999864
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-21 Score=226.53 Aligned_cols=299 Identities=19% Similarity=0.250 Sum_probs=233.4
Q ss_pred cccceeEEEEeC--CCCEEEEE--eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCC
Q psy8748 1691 HINKVNSVHYSG--DSRHCVSG--SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1691 Ht~~VtsLaFSP--DG~~LASG--S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
-..+|.|++||+ .|.++... +.+..+.|||...+......+..+..|....|+|.+..+++....|.+..|+.+.+
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~ 232 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGG 232 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCC
Confidence 446899999997 34455443 34567999999999988888888889999999998776666666889999998765
Q ss_pred CCCCcceEEEEEec-CccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC
Q psy8748 1767 DSTGAAKVIRELLG-YEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~g-h~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
.. .+....+.+ ....|.|+.|.+++.+++|..+|.|.+|+..+.+...... .|.+.|.+++.-.+|.++- |+.|
T Consensus 233 ~l---~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKD 307 (626)
T KOG2106|consen 233 SL---VKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKD 307 (626)
T ss_pred ce---EEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCcc
Confidence 42 222222222 2378999999999999999999999999998877776666 9999999999999987555 9999
Q ss_pred CeEEEEECCCCe----------------------------------------EEEEEecCCCCeEEEEEeCCCCEEEEEE
Q psy8748 1846 KSCKLWDFREKK----------------------------------------CVQTFFGHEADVNSVCFHPSGLAFATGS 1885 (2004)
Q Consensus 1846 GsIrIWDlrs~k----------------------------------------~I~tl~~h~s~ItsIafSPdg~~LaSgS 1885 (2004)
..|..||-.-.+ ......+|....+.++.+|+.+.+++++
T Consensus 308 Rki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g 387 (626)
T KOG2106|consen 308 RKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG 387 (626)
T ss_pred ceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeecc
Confidence 999999832100 0111236778889999999999999999
Q ss_pred CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC
Q psy8748 1886 EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM 1965 (2004)
Q Consensus 1886 ~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~ 1965 (2004)
.|+.+++|+ ..+...+... ..+..|+.|+|.| .+++|+..|...+.|.++...+..-.. ..+++.++|+|+|.
T Consensus 388 qdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~ 460 (626)
T KOG2106|consen 388 QDKHVRLWN--DHKLEWTKII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA 460 (626)
T ss_pred CcceEEEcc--CCceeEEEEe---cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCC
Confidence 999999999 4555555432 3568899999999 999999999999999998655554444 88999999999999
Q ss_pred EEEEEECCCeEEEEECCCC-eEEEEEEeecCCCCccccc
Q psy8748 1966 ALVTSSWDQFVKVWQESNT-IVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1966 ~LaSgS~DGtIrIWdlstg-~l~k~Ik~~~~h~~~VtsV 2003 (2004)
+||.|+.|+.|++|.++.+ ..+........ ..|+-+
T Consensus 461 ~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithL 497 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHL 497 (626)
T ss_pred EEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEe
Confidence 9999999999999999754 44444443332 455443
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-22 Score=234.54 Aligned_cols=291 Identities=21% Similarity=0.253 Sum_probs=232.4
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceee-EeecccccccccccCccccccccCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCL-RAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~l-kt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
.+|...|+||+++|++++.++ ++.||+|.-|++.+ ++.. ..|+. +
T Consensus 139 ~~H~~s~~~vals~d~~~~fs-ask~g~i~kw~v~t-------------gk~~~~i~~~--------------------~ 184 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFS-ASKDGTILKWDVLT-------------GKKDRYIIER--------------------D 184 (479)
T ss_pred ccccCcceEEEeeccccceee-cCCCcceeeeehhc-------------Cccccccccc--------------------c
Confidence 457888999999999999999 99999999999988 3211 11110 0
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
++ .... ..+.++.. ++|...|.+++.|+||+|||+|
T Consensus 185 ----------------ev------~k~~--------------------~~~~k~~r--~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 185 ----------------EV------LKSH--------------------GNPLKESR--KGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ----------------hh------hhhc--------------------cCCCCccc--ccccceeEEEEEcCCCcEEEec
Confidence 00 0000 00111111 4899999999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE
Q psy8748 1711 SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf 1790 (2004)
+.|..|.||+..+++.++.+++|.+.|.+++|-.....+++++.|+.|++|+++. ...+.++.+|.+.|..+..
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~------~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ------LSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH------hHHHHHHhCCccceeeech
Confidence 9999999999999999999999999999999998889999999999999999974 4667789999999999988
Q ss_pred eCCCcEEE-eecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cC---
Q psy8748 1791 IDDTTLLT-GSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF-GH--- 1865 (2004)
Q Consensus 1791 sdd~~LlS-gS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~-~h--- 1865 (2004)
..-.++++ |+.|+++++|++..... .++.++.+.+-|++|-. ...|++|+.+|.|.+|++-..+++.+.. +|
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~eesq--lifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPEESQ--LIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hcccceEEeccccceeEEEeccccce--eeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 87666655 55999999999965444 35668888999999984 5679999999999999999888776653 12
Q ss_pred --------CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce-eEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1866 --------EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ-IATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1866 --------~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~-i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
...|++++..|..+++++|+.+|.|++|-+..+-. +..+..-.-.+-|+.++|+++|+.+++|.
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 23789999999999999999999999999987722 22222223456799999999999877764
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=241.34 Aligned_cols=277 Identities=14% Similarity=0.194 Sum_probs=209.8
Q ss_pred EeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecC-CCEEEEeecCCeEEEEEcCCCCCC--CcceEEEEEecCcccee
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQS-GNFVACGGMDNMCTVYDLNNRDST--GAAKVIRELLGYEGFLS 1786 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPd-g~~LaSGS~DGtIrVWDl~t~~~~--~~~k~i~sl~gh~~~Vs 1786 (2004)
||.+|.|++|+......+..+.+|.+.|.+++|+|+ +++|++|+.||.|++|++...... ........+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998888888889999999999999996 789999999999999999754211 11123446778999999
Q ss_pred eeEEeCCCc--EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEec
Q psy8748 1787 SCRFIDDTT--LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG 1864 (2004)
Q Consensus 1787 svafsdd~~--LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~ 1864 (2004)
++.|++... +++++.||.|++||+++++....+ .+...|.+++|+++|.+|++++.|+.|++||+++++.+..+.+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i--~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI--NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE--ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 999997553 568899999999999998876554 3567899999999999999999999999999999999999999
Q ss_pred CCCCeEEE-----EEeCCCCEEEEEECCC----eEEEEEccC-CceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q psy8748 1865 HEADVNSV-----CFHPSGLAFATGSEDK----TARLFDIRA-DQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNV 1934 (2004)
Q Consensus 1865 h~s~ItsI-----afSPdg~~LaSgS~DG----tIrIWDLrt-gk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsI 1934 (2004)
|.+.+.+. .|++++.++++++.|+ .|++||+++ ++.+.........+.+......++|.++++|+.|+.|
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 98765433 3458888999988774 799999995 5555555434433334444445568999999999999
Q ss_pred EEEECCCCeeeEEEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1935 HVWDLLKTTHNGVLS--GHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1935 rIWDL~tge~l~tL~--gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
++|++..+.. ..+. .+..++.+++|.|....=+.. --..|+|.+.....++.+.
T Consensus 288 r~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr~~dv~~--cEi~R~~kl~~~~~i~pis 343 (568)
T PTZ00420 288 RYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQICDVYK--CEIGRVYKNENNSSIRPIS 343 (568)
T ss_pred EEEEccCCcE-EeecccccCCCccceEEccccccCchh--hhHhHHhhhcCCCeEEEEE
Confidence 9999977643 2222 256788999999974321111 1234566665433344444
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=206.40 Aligned_cols=247 Identities=21% Similarity=0.376 Sum_probs=201.1
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCce-----EEEeeCCCCceEEEEEecC----CCEEEEeecCCeE
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK-----TQVIPLRSAWVMSVAFAQS----GNFVACGGMDNMC 1758 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~-----l~ti~~Ht~~ItsLafSPd----g~~LaSGS~DGtI 1758 (2004)
-+.|.+.|.|.+|||+|+++++|+.|++|++.-+....+ -..+..|.+.|..++|..+ +..|++++ -|..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g-agdc 163 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG-AGDC 163 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC-CCcc
Confidence 356999999999999999999999999999986543322 2356789999999999754 34666654 3445
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeecc-c-----cCCeEEEEE
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA-H-----IGDVVSISL 1832 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~-h-----~~~ItsLaf 1832 (2004)
++|-.+-+ .......+.+|.+.|..+...++-.+++|+.|.+|++||++-..++...-.. | ...|.++++
T Consensus 164 ~iy~tdc~----~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 164 KIYITDCG----RGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred eEEEeecC----CCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 55544332 3466778899999999988888999999999999999999988777554211 1 256899999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCC--ceeEEEcCCCCC
Q psy8748 1833 SPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRAD--QQIATYLPPNKN 1910 (2004)
Q Consensus 1833 SPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtg--k~i~t~~~~~~~ 1910 (2004)
.|.|+++++|-.|....+||++.++.++.+..|...|+|+.|+|...++++++.|.+|++-|+... ..+.......|.
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehk 319 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHK 319 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEecc
Confidence 999999999999999999999999999999999999999999999999999999999999998732 112222234566
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1911 SGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
..+..+.|+|..--+++.+.|.++.+|-+
T Consensus 320 dk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 320 DKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred CceEEEEecCccceeeeccCcceEEEecc
Confidence 77888999999989999999999999975
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=239.53 Aligned_cols=282 Identities=23% Similarity=0.352 Sum_probs=240.0
Q ss_pred cccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceE--EEeeCCCCceEE-EEEec-CCCEEEEeecCCeE
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKT--QVIPLRSAWVMS-VAFAQ-SGNFVACGGMDNMC 1758 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l--~ti~~Ht~~Its-LafSP-dg~~LaSGS~DGtI 1758 (2004)
+..+++.||...|..+++.+. .+++++|.||++++|+-..++.+ ..+.+|.+.|.. +++.+ ++-.+++|+.|+.|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 346789999999999998654 48999999999999997555444 346778888877 88886 45579999999999
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCE
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQY 1838 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~ 1838 (2004)
.+|..... .....+.+|...|+++....+..+++|+.|.++++|-...-.. ...+|...|++++.-|++ .
T Consensus 84 ~v~~~~~~------~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~---~l~gH~asVWAv~~l~e~-~ 153 (745)
T KOG0301|consen 84 IVFKLSQA------EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVY---SLQGHTASVWAVASLPEN-T 153 (745)
T ss_pred EEEecCCC------CchhhhhccccceeeeecCCcCceEecccccceEEecchhhhc---ccCCcchheeeeeecCCC-c
Confidence 99998753 5677889999999999988777799999999999998754332 267999999999999988 8
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEE
Q psy8748 1839 FVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAV 1918 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLaf 1918 (2004)
+++|+.|.+|++|.- ++.++++.+|.+.|+++++-+++ .|++++.||.|+.|++ +|.++... .+|..-+.+++.
T Consensus 154 ~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~--~ghtn~vYsis~ 227 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM--HGHTNFVYSISM 227 (745)
T ss_pred EEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee--eccceEEEEEEe
Confidence 899999999999985 77889999999999999999876 5888999999999999 57777666 577788999998
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1919 SPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
..++..++++++|++++||+.. ++...+.-....|+++.+-++|+ +++|+.||.||||..+..
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 8889999999999999999965 77888876667899999998887 778888999999988753
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=228.11 Aligned_cols=286 Identities=24% Similarity=0.381 Sum_probs=238.3
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE-e-----------------eCCCCceEEEEEecCC
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQV-I-----------------PLRSAWVMSVAFAQSG 1746 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~t-i-----------------~~Ht~~ItsLafSPdg 1746 (2004)
...+..|.-.|.+++++|++.+.++++.||+|.=|++.+|+.... + +.|...|.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 567788999999999999999999999999999999988874411 1 2677889999999999
Q ss_pred CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccC
Q psy8748 1747 NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIG 1825 (2004)
Q Consensus 1747 ~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~ 1825 (2004)
++|++|+.|..|.||+.++. ..+..+.+|.+.|.+++|-.+ +.+++++.|+.|++|+++....+ ..+.+|.+
T Consensus 215 kylatgg~d~~v~Iw~~~t~------ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v-etlyGHqd 287 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTL------EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV-ETLYGHQD 287 (479)
T ss_pred cEEEecCCCceEEEecCccc------chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH-HHHhCCcc
Confidence 99999999999999999865 455668999999999999854 56999999999999999887766 44579999
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEc
Q psy8748 1826 DVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~ 1905 (2004)
.|.++....-++.+-+|+.|+++++|++.... ...+.++.+.+-|++|-.+ .+|++|+.+|.|.+|++.+.+++.+..
T Consensus 288 ~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 288 GVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred ceeeechhcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEee
Confidence 99999998888889999999999999995433 4566788999999999855 489999999999999999888877663
Q ss_pred CCCC----------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeeEEEccCCCCeEEEEEcCCCCEEEEE-
Q psy8748 1906 PPNK----------NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT----THNGVLSGHENRVTSISLSPNGMALVTS- 1970 (2004)
Q Consensus 1906 ~~~~----------~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg----e~l~tL~gHs~~VtsLaFSPDg~~LaSg- 1970 (2004)
..++ ...|++++..|..+++++|+.+|.|++|-+..+ .++..+. -.+.|++++|+++|+.+++|
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence 3221 237899999999999999999999999998776 3444444 57889999999999966555
Q ss_pred ECCCeEEEEE
Q psy8748 1971 SWDQFVKVWQ 1980 (2004)
Q Consensus 1971 S~DGtIrIWd 1980 (2004)
|....+-=|-
T Consensus 445 GkEhRlGRW~ 454 (479)
T KOG0299|consen 445 GKEHRLGRWW 454 (479)
T ss_pred ccccccceee
Confidence 5555554443
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-22 Score=244.70 Aligned_cols=287 Identities=20% Similarity=0.392 Sum_probs=241.1
Q ss_pred ccccee---EEEEe-CCCCEEEEEeCCCeEEEEECCCCc------eEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1691 HINKVN---SVHYS-GDSRHCVSGSLDGKLIIWDTWTGN------KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1691 Ht~~Vt---sLaFS-PDG~~LASGS~DGtIrVWDl~Tgk------~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
|...|. .+..+ |.++||+|||.||.|++|++.... ....+..|.++|..+....+++.|++++.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 555555 44444 577899999999999999876432 35677889999999999999999999999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEe--CCCcEEEeecCCeEEEEECCCCce--eE--------EeeccccCCeE
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQR--IH--------EVAQAHIGDVV 1828 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~~--i~--------~il~~h~~~It 1828 (2004)
|+..... .-+...+..|.+.|.|+++. +...+++|+-|+.|.+||++++.. +. ....++...|.
T Consensus 100 W~~~~~~----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY 175 (735)
T KOG0308|consen 100 WNAHKDN----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY 175 (735)
T ss_pred eecccCc----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence 9997642 23456677899999999994 445688999999999999997732 11 11237888999
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCC
Q psy8748 1829 SISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN 1908 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~ 1908 (2004)
+++.++.|..|++|+..+.+++||.++++.+..+.+|...|.++..++||..+++++.||+|++||+...+++.++. .
T Consensus 176 SLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~--v 253 (735)
T KOG0308|consen 176 SLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI--V 253 (735)
T ss_pred eeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE--e
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985 4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1909 KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1909 ~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
|...+.++..+|+-.++++|+.||.|..=|+++......+-....+|..+..+.+.+-+-+++.|+.|+-|...-
T Consensus 254 H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 254 HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 556699999999999999999999999999998654444444667788888876555567888899999997764
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=214.44 Aligned_cols=268 Identities=23% Similarity=0.348 Sum_probs=219.2
Q ss_pred ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeec--
Q psy8748 1725 NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSG-- 1801 (2004)
Q Consensus 1725 k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~-- 1801 (2004)
+..+.+....+.|.++.|+++|.++++++.|..+++||..++ +..+.+..+.-.+..+.|. ..+.++.++.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g------~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~ 78 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG------KQVKTINSKKYGVDLACFTHHSNTVIHSSTKE 78 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC------ceeeEeecccccccEEEEecCCceEEEccCCC
Confidence 334445556788999999999999999999999999999765 5566666666677777776 4445665555
Q ss_pred CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEE
Q psy8748 1802 DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAF 1881 (2004)
Q Consensus 1802 DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~L 1881 (2004)
|.+|+..++.+++.+ +.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+..... ..++|.|+|-++
T Consensus 79 d~tIryLsl~dNkyl-RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLif 155 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYL-RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIF 155 (311)
T ss_pred CCceEEEEeecCceE-EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEE
Confidence 889999999999988 67799999999999999999999999999999999998877666644333 357899999999
Q ss_pred EEEECCCeEEEEEccCC--ceeEEEcCC-CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCe---
Q psy8748 1882 ATGSEDKTARLFDIRAD--QQIATYLPP-NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRV--- 1955 (2004)
Q Consensus 1882 aSgS~DGtIrIWDLrtg--k~i~t~~~~-~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~V--- 1955 (2004)
|++...+.|++||++.. .+..++... +.....+.+.|+|||++++.++..+.+++.|.-+|....++.++...-
T Consensus 156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP 235 (311)
T ss_pred EEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence 99988889999999864 334444333 445778999999999999999999999999999999999988765443
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1956 tsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
.+.+|+||++++++|+.||+|.+|++++|......+.. +.+.+.|+
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~--~~~~~~~~ 281 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP--NGGPVSCV 281 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC--CCCCcccc
Confidence 67789999999999999999999999999765554433 56666665
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-20 Score=202.00 Aligned_cols=295 Identities=23% Similarity=0.384 Sum_probs=237.4
Q ss_pred ccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECC------CCc---------eEEEeeCCCCceEEEEEecCC
Q psy8748 1682 LMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTW------TGN---------KTQVIPLRSAWVMSVAFAQSG 1746 (2004)
Q Consensus 1682 ~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~------Tgk---------~l~ti~~Ht~~ItsLafSPdg 1746 (2004)
+..+..| ..+..|++++|+|.|.+.++|+..++++|.-.. .+. ..+.-+.|.+.|+|.+|+|+|
T Consensus 23 f~~i~~l-~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 23 FEAINIL-EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred eEEEEEe-cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 3344334 356789999999999999999999999987432 111 112235689999999999999
Q ss_pred CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC----c-EEE-eecCCeEEEEECCCCceeEEee
Q psy8748 1747 NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT----T-LLT-GSGDMKIVTWNLETGQRIHEVA 1820 (2004)
Q Consensus 1747 ~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~----~-LlS-gS~DGtI~IWDl~tg~~i~~il 1820 (2004)
..+++|+.|.+|++..++....... .....+.-|.+.|..++|.++. . +++ |..|..|++-|..+|+..+ .+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~-g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~-a~ 179 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNAT-GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH-AL 179 (350)
T ss_pred CeEEecCCCceEEEEeccccccccc-CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce-ee
Confidence 9999999999999998875432222 2234567789999999998542 3 443 3456778888888888774 45
Q ss_pred ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEec--C-----CCCeEEEEEeCCCCEEEEEECCCeEEEE
Q psy8748 1821 QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG--H-----EADVNSVCFHPSGLAFATGSEDKTARLF 1893 (2004)
Q Consensus 1821 ~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~--h-----~s~ItsIafSPdg~~LaSgS~DGtIrIW 1893 (2004)
.+|.+.|.++ ++-+|-.+++|+.|.+|++||++-..++.++.. | ...|.+++..|.|+.+++|-.|....+|
T Consensus 180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 7899988886 334688999999999999999998888877642 1 2578999999999999999999999999
Q ss_pred EccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeeEEEccCCCCeEEEEEcCCCCEEEE
Q psy8748 1894 DIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT----THNGVLSGHENRVTSISLSPNGMALVT 1969 (2004)
Q Consensus 1894 DLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg----e~l~tL~gHs~~VtsLaFSPDg~~LaS 1969 (2004)
|++.++.+..+ ..|...|.|+.|+|...|+++++.|..|++-|+... -++.....|.+.+..+.|+|..--+++
T Consensus 259 dirg~r~iq~f--~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 259 DIRGGRMIQRF--HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred EeeCCceeeee--CCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence 99999999998 566788999999999999999999999999998532 233445679999999999999999999
Q ss_pred EECCCeEEEEECC
Q psy8748 1970 SSWDQFVKVWQES 1982 (2004)
Q Consensus 1970 gS~DGtIrIWdls 1982 (2004)
.+.|.++.+|.+.
T Consensus 337 ssadkt~tlwa~~ 349 (350)
T KOG0641|consen 337 SSADKTATLWALN 349 (350)
T ss_pred ccCcceEEEeccC
Confidence 9999999999765
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-21 Score=216.79 Aligned_cols=263 Identities=22% Similarity=0.384 Sum_probs=215.9
Q ss_pred EEEEeCCCeEEEEECCCC------------ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceE
Q psy8748 1707 CVSGSLDGKLIIWDTWTG------------NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tg------------k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
+++|++...|.-+++.-. ..+..+..|.++|++++.+ +.++++|+.|.+|++||+... ..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~------~q 75 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKR------KQ 75 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccch------hh
Confidence 566777666666654311 2245567899999999987 999999999999999999864 44
Q ss_pred EEEEecCccceeeeEEeCCC---cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy8748 1775 IRELLGYEGFLSSCRFIDDT---TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1775 i~sl~gh~~~Vssvafsdd~---~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIW 1851 (2004)
...+..|.+.++++.|.... .+++|+.||.|.+|+......+ ..+++|.+.|+.++++|.|++-++.+.|+.++.|
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~-~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL-KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe-eeecccccccceeEecCCCceEEEEcCCceeeee
Confidence 56677899999999998654 7999999999999999988666 5568999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC
Q psy8748 1852 DFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD 1931 (2004)
Q Consensus 1852 Dlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD 1931 (2004)
|+-.|+.-.... -......+.|+|.|.+|+.++.+ .|-+|.+.+.+.......+ ..+.|+.|. ++.++++|.+|
T Consensus 155 NLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~---~r~l~~~~l-~~~~L~vG~d~ 228 (362)
T KOG0294|consen 155 NLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP---KRILCATFL-DGSELLVGGDN 228 (362)
T ss_pred hhhcCccceeec-cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc---ccceeeeec-CCceEEEecCC
Confidence 998887544442 23334459999999999988865 5999999877766555333 335555554 57789999999
Q ss_pred CeEEEEECCCCeeeEEEccCCCCeEEEEE--cCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1932 NNVHVWDLLKTTHNGVLSGHENRVTSISL--SPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1932 GsIrIWDL~tge~l~tL~gHs~~VtsLaF--SPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
+.|.+||..+..+...+.+|..+|.++.+ .|++.+|+|+|.||.|+|||++..
T Consensus 229 ~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 229 EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999999999999999999999999985 467899999999999999999865
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=232.35 Aligned_cols=430 Identities=18% Similarity=0.258 Sum_probs=295.6
Q ss_pred CCccccccccccCCC------CCCccCCCCCCCCCCCCCCCCCCCCCC-CCCCeEEEEEccCCCEEEEeecCCCeEEEEE
Q psy8748 1512 SGSKSVLKKRWRKPR------TPNNYNVQGDASNPADTADIPTNAPEP-CKEQRNAVSFHACSTLLASLSSYQYTRKAWK 1584 (2004)
Q Consensus 1512 ~~s~~~L~~r~~k~~------~~~~yni~p~~~~~~ds~~~pt~a~e~-Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWD 1584 (2004)
..+++.++..|.+.. .+..|.+|......+....+....+.+ ..-+-+.-+|+|.-+||.. +..-+-|+
T Consensus 243 ~rmv~Air~Gwik~~~r~kee~~~~ydLW~~dd~~e~l~r~~~~~paPKl~lP~heESYNPP~EYL~~----~eE~~~we 318 (733)
T KOG0650|consen 243 SRMVHAIRKGWIKTDPREKEENYKFYDLWADDDTGEQLDRHLDLVPAPKLALPGHEESYNPPEEYLFD----EEEKKAWE 318 (733)
T ss_pred HHHHHHHHhccccCCccccccCccccceeccCCchhhhhcccccCCccccCCCCcccccCCchhhccC----HHHhhhhh
Confidence 445555555555441 223678887653333333222222222 3334566899999999998 44445566
Q ss_pred ccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhc
Q psy8748 1585 KDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQAD 1664 (2004)
Q Consensus 1585 v~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~ 1664 (2004)
-.. ...+...+.+..|..+-..|. |-+.-.+...+++.-.+ +...+.....
T Consensus 319 ~~E----------------------~~~R~l~F~P~ky~sLR~VPa-----Y~r~irErFeRcLDLYL--~PR~rK~rln 369 (733)
T KOG0650|consen 319 EAE----------------------PEDRKLNFIPQKYKSLRKVPA-----YERSIRERFERCLDLYL--APRVRKMRLN 369 (733)
T ss_pred hcc----------------------ccccccccccccchhhhcchh-----HHHHHHHHHHHhHHhhh--Ccccccceec
Confidence 333 122333333333322222221 22222222233222222 3445555666
Q ss_pred cccccccCCCCCCCccccc---ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEE
Q psy8748 1665 TKLEDVTASMPDAPKVKLM---PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVA 1741 (2004)
Q Consensus 1665 ~~~se~~~s~~~~~~lk~~---pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLa 1741 (2004)
.+.+.....++.+..+... +...++||++.|+||...|.|.+|++|+.||+|+||.+.+|++++++.. .+.|.|++
T Consensus 370 iDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~va 448 (733)
T KOG0650|consen 370 IDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVA 448 (733)
T ss_pred CCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEE
Confidence 7777788888877776544 4557899999999999999999999999999999999999999998874 45799999
Q ss_pred EecCCC--EEEEeecCCeEEEEEcCCCCC-----------------C--------------CcceEEEEEecCccceeee
Q psy8748 1742 FAQSGN--FVACGGMDNMCTVYDLNNRDS-----------------T--------------GAAKVIRELLGYEGFLSSC 1788 (2004)
Q Consensus 1742 fSPdg~--~LaSGS~DGtIrVWDl~t~~~-----------------~--------------~~~k~i~sl~gh~~~Vssv 1788 (2004)
|+|.++ .|+++- .+.+.+-+..-+.. . .....+.....|...|..+
T Consensus 449 w~P~~~~~vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~v 527 (733)
T KOG0650|consen 449 WNPLSDLCVLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQV 527 (733)
T ss_pred ecCCCCceeEEEEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcccee
Confidence 999765 334333 33344443221100 0 0011133445677888999
Q ss_pred EEe-CCCcEEEeec---CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEec
Q psy8748 1789 RFI-DDTTLLTGSG---DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG 1864 (2004)
Q Consensus 1789 afs-dd~~LlSgS~---DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~ 1864 (2004)
.|+ .+.+|++... ...|.|+++...... .-+....+.|.++.|+|...+|++++. ..|+|||+.....++.+..
T Consensus 528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t 605 (733)
T KOG0650|consen 528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT 605 (733)
T ss_pred eeecCCceEEEeccCCCcceEEEEeccccccc-CchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc
Confidence 998 4556666544 357889998766544 334456778999999999999998884 6899999998888877777
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC----
Q psy8748 1865 HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL---- 1940 (2004)
Q Consensus 1865 h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~---- 1940 (2004)
....|..++.+|.|..++.|+.|+++..||+.-.....+.. ..|...++.++|++.-.++++|+.||++.||.-.
T Consensus 606 g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l-r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D 684 (733)
T KOG0650|consen 606 GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL-RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND 684 (733)
T ss_pred CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh-hhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh
Confidence 77889999999999999999999999999998654433322 4566789999999999999999999999998532
Q ss_pred ---C--CeeeEEEccCCCC----eEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1941 ---K--TTHNGVLSGHENR----VTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1941 ---t--ge~l~tL~gHs~~----VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
+ --+++.+.+|... |.++.|+|...+|+++|.||+|++|
T Consensus 685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 1 2356778888766 9999999999999999999999998
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.4e-21 Score=215.48 Aligned_cols=296 Identities=21% Similarity=0.285 Sum_probs=217.8
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE--E--eeCCCCceEEEEEecCCCEEE-EeecCCeEE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQ--V--IPLRSAWVMSVAFAQSGNFVA-CGGMDNMCT 1759 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~--t--i~~Ht~~ItsLafSPdg~~La-SGS~DGtIr 1759 (2004)
...|+||.+.|++++|+.||++|||++.|++|++|++++..... . ....-+.-+.+.|.||-+-++ .+.....++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45799999999999999999999999999999999988743211 1 111223567889999977554 445556899
Q ss_pred EEEcCCCCCCCcc-e--EEE---EEecCccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEE
Q psy8748 1760 VYDLNNRDSTGAA-K--VIR---ELLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1760 VWDl~t~~~~~~~-k--~i~---sl~gh~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf 1832 (2004)
+|.+......... . ... -...|.-.+..+-..+ ..++++++.|..|.+|+++ |+.+..+ ......-+..++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i-dtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI-DTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee-ccccccccceee
Confidence 9988654321110 0 000 1112333333333333 3458889999999999998 7777555 344455667899
Q ss_pred CCCCCEEEEEECCCeEEEEECC---CC-----eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCC------
Q psy8748 1833 SPDGQYFVTGSVDKSCKLWDFR---EK-----KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRAD------ 1898 (2004)
Q Consensus 1833 SPdg~~LaSGS~DGsIrIWDlr---s~-----k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtg------ 1898 (2004)
+|+|+++++++-.-.|++|..- +| ..+..+.+|...|..++|+++...+++.+.||++++||++-.
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999863 22 235567899999999999999999999999999999997521
Q ss_pred -ceeEEEc--CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-ccCCCCeEEEEEcCCCCEEEEEECCC
Q psy8748 1899 -QQIATYL--PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVL-SGHENRVTSISLSPNGMALVTSSWDQ 1974 (2004)
Q Consensus 1899 -k~i~t~~--~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL-~gHs~~VtsLaFSPDg~~LaSgS~DG 1974 (2004)
+.+.... .....+.-..+..+|+|+.|+.+. ...+++|..++|+....+ ..|...|++++|+++|+++++|| |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 1112211 112233455899999999988764 557999999998887776 46999999999999999999999 78
Q ss_pred eEEEEECCCC
Q psy8748 1975 FVKVWQESNT 1984 (2004)
Q Consensus 1975 tIrIWdlstg 1984 (2004)
.++++.-..|
T Consensus 395 ~vrv~~ntpg 404 (420)
T KOG2096|consen 395 YVRVIRNTPG 404 (420)
T ss_pred eeeeecCCCc
Confidence 8999874444
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=225.74 Aligned_cols=237 Identities=21% Similarity=0.319 Sum_probs=206.1
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecC-CCEEEEeecCCeEEEEEcCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQS-GNFVACGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPd-g~~LaSGS~DGtIrVWDl~t~~~~ 1769 (2004)
-.+.|.++.|-.||+++|+|+..|.|+|||.++...++.+..|..+|..+.|+|+ +..+++|+.|+.+++||+.+.
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a--- 143 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA--- 143 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---
Confidence 4468999999999999999999999999998777788889999999999999995 457788999999999999864
Q ss_pred CcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCC-ceeEEeeccccCCeEEEEECCCCCEEEEEECCC
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETG-QRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK 1846 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg-~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG 1846 (2004)
.....+.+|.+.|.|..+++. ..+++|+.||.|++||.+.. ..+.. ..|..+|..+.+-|.|..+++++ ..
T Consensus 144 ---~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e--lnhg~pVe~vl~lpsgs~iasAg-Gn 217 (487)
T KOG0310|consen 144 ---YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE--LNHGCPVESVLALPSGSLIASAG-GN 217 (487)
T ss_pred ---EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE--ecCCCceeeEEEcCCCCEEEEcC-CC
Confidence 246689999999999999965 45999999999999999987 44433 47899999999999999999887 46
Q ss_pred eEEEEECCCCe-EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEE
Q psy8748 1847 SCKLWDFREKK-CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1847 sIrIWDlrs~k-~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~L 1925 (2004)
.|++||+.+|. .+.....|...|+|+++..++..|++|+-||.|++||+.+.+.+..+.. .++|.+++.+|++..+
T Consensus 218 ~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 218 SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTV 294 (487)
T ss_pred eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceE
Confidence 89999999554 4445555999999999999999999999999999999988888888744 3679999999999999
Q ss_pred EEEeCCCeEEEEEC
Q psy8748 1926 FCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1926 aSGSsDGsIrIWDL 1939 (2004)
++|..||.+.+-+.
T Consensus 295 viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 295 VIGMSNGLVSIRRR 308 (487)
T ss_pred EEecccceeeeehh
Confidence 99999998877644
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=231.21 Aligned_cols=290 Identities=19% Similarity=0.307 Sum_probs=234.3
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECC--CC--ceEEEeeCCCCceEEEEEe-cCCCEEEEeecCCeEEEEEcC
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTW--TG--NKTQVIPLRSAWVMSVAFA-QSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~--Tg--k~l~ti~~Ht~~ItsLafS-Pdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
.|.+.|....|-|....+++++.|+.+++|=.. +| +.++.-.+|..+..|+.|. .+|.++.+++.|++.+.+++.
T Consensus 286 ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~ 365 (910)
T KOG1539|consen 286 AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVI 365 (910)
T ss_pred cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhh
Confidence 478899999999999999999999999988544 44 4566667899999999998 578899999999988777653
Q ss_pred CCCC---------------CCcc-------eEE-------------------------------------------EEEe
Q psy8748 1765 NRDS---------------TGAA-------KVI-------------------------------------------RELL 1779 (2004)
Q Consensus 1765 t~~~---------------~~~~-------k~i-------------------------------------------~sl~ 1779 (2004)
.... .... ..+ ..+.
T Consensus 366 ~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~ 445 (910)
T KOG1539|consen 366 SESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFK 445 (910)
T ss_pred HHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcccc
Confidence 2100 0000 000 0000
Q ss_pred cCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEe--eccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1780 GYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEV--AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK 1856 (2004)
Q Consensus 1780 gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~i--l~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~ 1856 (2004)
.....+.+++.+ -++..+.|...|.|-+|++.+|-....+ ...|.++|++++.+.-++.+++++.+|.+++||....
T Consensus 446 ~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 446 KDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK 525 (910)
T ss_pred ccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc
Confidence 112344555554 3566788899999999999999877555 3579999999999998999999999999999999988
Q ss_pred eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy8748 1857 KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHV 1936 (2004)
Q Consensus 1857 k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrI 1936 (2004)
..+..+. -...+.++..+.....++.+..|-.|+++|..+.+.++.+ .+|...|+.++|||||++|++++.|++|++
T Consensus 526 ~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f--~gh~nritd~~FS~DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 526 VLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF--WGHGNRITDMTFSPDGRWLISASMDSTIRT 602 (910)
T ss_pred ceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh--hccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence 8776663 4677889999998889999999999999999998888888 466788999999999999999999999999
Q ss_pred EECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCC
Q psy8748 1937 WDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWD-QFVKVWQESN 1983 (2004)
Q Consensus 1937 WDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D-GtIrIWdlst 1983 (2004)
||+.++.++..+. -..+.+++.|+|+|.+||+...| .-|++|.-..
T Consensus 603 wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 603 WDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 9999999988775 46789999999999999999988 6799997554
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-22 Score=228.97 Aligned_cols=284 Identities=19% Similarity=0.282 Sum_probs=232.3
Q ss_pred CCCCCCeEEEEEccCC-CEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1552 EPCKEQRNAVSFHACS-TLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdG-k~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
.+|.++|.|++=+|.. ..+|| |+.||.|+|||+..+
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aS-Gs~DG~VkiWnlsqR------------------------------------------ 99 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVAS-GSCDGEVKIWNLSQR------------------------------------------ 99 (433)
T ss_pred cccccccchhhcCcchhhhhhc-cccCceEEEEehhhh------------------------------------------
Confidence 5699999999999998 88999 999999999998771
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
.+...++.|.+.|+.|++.. ..++++
T Consensus 100 ----------------------------------------------------~~~~~f~AH~G~V~Gi~v~~--~~~~tv 125 (433)
T KOG0268|consen 100 ----------------------------------------------------ECIRTFKAHEGLVRGICVTQ--TSFFTV 125 (433)
T ss_pred ----------------------------------------------------hhhheeecccCceeeEEecc--cceEEe
Confidence 02345678999999999986 679999
Q ss_pred eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE
Q psy8748 1711 SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf 1790 (2004)
|.|.+|+.|.+.- ...+++.+ .+.+..+.-+..++.++++|. .|.|||.... .++..+.-..+.+.++.|
T Consensus 126 gdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~------~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 126 GDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD------NPVSSMSWGADSISSVKF 195 (433)
T ss_pred cCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccC------CccceeecCCCceeEEec
Confidence 9999999998644 46666654 345777777777888888875 4999998643 445566667788899999
Q ss_pred eCC--CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCC-eEEEEEecCCC
Q psy8748 1791 IDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK-KCVQTFFGHEA 1867 (2004)
Q Consensus 1791 sdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~-k~I~tl~~h~s 1867 (2004)
++. +.|++++.|+.|.+||++++..+.++... ..-..|+|+|++-.|++|+.|..++.||++.. .++....+|.+
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~--mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs 273 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLKKVILT--MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS 273 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccceeeee--ccccceecCccccceeeccccccceehhhhhhcccchhhcccce
Confidence 854 45778889999999999999988777433 34578999998889999999999999999864 45777889999
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1868 DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1868 ~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
.|.+++|+|.|+-|++||.|.+|+||..+.+.....+-. ..-..|.|+.|+.|.+|+++|++|+.|++|...-.+.+
T Consensus 274 AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 274 AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 999999999999999999999999999987766544421 12245899999999999999999999999987554443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-19 Score=208.81 Aligned_cols=277 Identities=19% Similarity=0.215 Sum_probs=208.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEE-EEeecCCeEEEEEcCCCCCCCcceEEEEEecCc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFV-ACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYE 1782 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~L-aSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~ 1782 (2004)
+..+++++.||.|++||..+++....+..+.. +.+++|+|+++.+ ++++.++.|++||..+++ ....+..+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~------~~~~~~~~~ 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE------VIGTLPSGP 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc------EEEeccCCC
Confidence 35688999999999999999998888886654 6789999999876 567788999999987643 223333332
Q ss_pred cceeeeEEeCCC-cEEE-eecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC-eEEEEECCCCeEE
Q psy8748 1783 GFLSSCRFIDDT-TLLT-GSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK-SCKLWDFREKKCV 1859 (2004)
Q Consensus 1783 ~~Vssvafsdd~-~LlS-gS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG-sIrIWDlrs~k~I 1859 (2004)
. +..+.+++++ .+++ +..++.|++||+.+++.+..+. +...+.+++|+|+|+++++++.++ .+.+||.++++..
T Consensus 74 ~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~ 150 (300)
T TIGR03866 74 D-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV 150 (300)
T ss_pred C-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE
Confidence 2 3556676554 4544 4568999999999877664442 234468899999999999988775 4677899888766
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCC-----CCCCeEEEEEcCCCCEEEEE-eCCC
Q psy8748 1860 QTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPN-----KNSGFTSCAVSSSGRYIFCG-SDDN 1932 (2004)
Q Consensus 1860 ~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~-----~~s~ItsLafSPdG~~LaSG-SsDG 1932 (2004)
..... ...+.+++|+|++.++++++ .+|.|++||+.+++....+.... .......++|+|+|++++++ +.++
T Consensus 151 ~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 151 DNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred EEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 55432 34567899999999886554 58999999999987766553211 11123568899999986554 4567
Q ss_pred eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEEEe
Q psy8748 1933 NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTS-SWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1933 sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSg-S~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
.+.+||+.+++....+. +...+.+++|+|+|.+|+++ +.+|.|++||+.+++..+.++.
T Consensus 230 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred eEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 89999999888776553 45679999999999999886 5689999999999987676663
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=232.06 Aligned_cols=237 Identities=22% Similarity=0.370 Sum_probs=203.1
Q ss_pred ccccccccceeE-EEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1686 KSLKGHINKVNS-VHYSG-DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1686 ~sL~GHt~~Vts-LaFSP-DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
+.+.+|.+-|.+ ++|-+ ++..+++|+.|++|.+|..........+++|...|.++....++. +++|+.|.++++|..
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence 345567777777 88875 555799999999999999999999999999999999999887777 999999999999987
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
.. ....+.+|...|+.+...+.+.+++|+.|..|++|.- ++.+ +.+.+|.+.|..+++-+++ .|++++
T Consensus 130 ~~--------l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l-~tf~gHtD~VRgL~vl~~~-~flScs 197 (745)
T KOG0301|consen 130 GE--------LVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLL-KTFSGHTDCVRGLAVLDDS-HFLSCS 197 (745)
T ss_pred hh--------hhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchh-hhhccchhheeeeEEecCC-CeEeec
Confidence 53 3445899999999999999999999999999999986 3444 5567899999999999764 588999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC
Q psy8748 1844 VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~ 1923 (2004)
.||.|+.|++ +++++..+.+|..-|.++....++..++++++|++++||+.. .+...+..+. ..++++.+-++|+
T Consensus 198 NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPt--tsiWsa~~L~NgD 272 (745)
T KOG0301|consen 198 NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPT--TSIWSAKVLLNGD 272 (745)
T ss_pred CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCc--cceEEEEEeeCCC
Confidence 9999999999 788899999999999999988888899999999999999976 6666664443 4688888888887
Q ss_pred EEEEEeCCCeEEEEECCC
Q psy8748 1924 YIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1924 ~LaSGSsDGsIrIWDL~t 1941 (2004)
|++|+.||.||||....
T Consensus 273 -Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 273 -IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred -EEEeccCceEEEEEecc
Confidence 66788999999998753
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-20 Score=232.80 Aligned_cols=254 Identities=16% Similarity=0.176 Sum_probs=194.0
Q ss_pred ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC-------CcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEE
Q psy8748 1736 WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST-------GAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIV 1806 (2004)
Q Consensus 1736 ~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~-------~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~ 1806 (2004)
.|.....++++..+++++.+.....|+...+... ........+.+|.+.|.++.|++ +..+++|+.||.|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3444455556666666666666666665432100 00011234678999999999986 45799999999999
Q ss_pred EEECCCCce------eEEeeccccCCeEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCC
Q psy8748 1807 TWNLETGQR------IHEVAQAHIGDVVSISLSPDG-QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL 1879 (2004)
Q Consensus 1807 IWDl~tg~~------i~~il~~h~~~ItsLafSPdg-~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~ 1879 (2004)
+||+.++.. ....+.+|...|.+++|+|++ ++|++|+.||.|++||+++++.+..+.+|...|.+++|+|+|.
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 999976531 123457899999999999975 6999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe----CCCeEEEEECCCCe-eeEEEccC-CC
Q psy8748 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS----DDNNVHVWDLLKTT-HNGVLSGH-EN 1953 (2004)
Q Consensus 1880 ~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS----sDGsIrIWDL~tge-~l~tL~gH-s~ 1953 (2004)
+|++++.||+|++||+++++.+..+..+.. .....+.|.+++..+++++ .|+.|++||+++.. +......+ ..
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~-~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~ 260 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHAS-AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS 260 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCC-CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC
Confidence 999999999999999999988877643321 2345678899888777654 47899999998754 33333333 34
Q ss_pred CeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEE
Q psy8748 1954 RVTSISLSPNGMALVTSS-WDQFVKVWQESNTIVWKVL 1990 (2004)
Q Consensus 1954 ~VtsLaFSPDg~~LaSgS-~DGtIrIWdlstg~l~k~I 1990 (2004)
.+....|++++.+|++|| .||.|++|++.++......
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 566678899999999988 4999999999998765544
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=212.40 Aligned_cols=230 Identities=20% Similarity=0.258 Sum_probs=179.6
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCC--EEEEeecCCeEEEEEcCCC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN--FVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~--~LaSGS~DGtIrVWDl~t~ 1766 (2004)
..|.++|.+++|+.||..+++|+.|+.+++||+.++ ....+..|.++|.++.|-+... .|++|+.|.+|+.||.+..
T Consensus 69 ~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 69 QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred hccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence 458899999999999999999999999999999999 5566788999999999988665 8999999999999999754
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEe-eccccCCeEEEEECCCCCEEEEEECC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV-AQAHIGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~i-l~~h~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
. .+.++. ....+.++.. ....+++++.++.|.+|+++.+....+. .....-.+.|++..++....+.|+-+
T Consensus 148 ~------pv~t~~-LPeRvYa~Dv-~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 148 N------PVATLQ-LPERVYAADV-LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred C------eeeeee-ccceeeehhc-cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 2 111111 1222222221 2346888999999999999776543222 22344568899999988888999999
Q ss_pred CeEEEEECCCC--eEEEEEecCC---------CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeE
Q psy8748 1846 KSCKLWDFREK--KCVQTFFGHE---------ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1846 GsIrIWDlrs~--k~I~tl~~h~---------s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~It 1914 (2004)
|.+.|..+..+ +.-..++.|. ..|++|+|+|....|++++.||++.+||-.....+... +.+..+|+
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s--~~~~qpIt 297 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS--ETHPQPIT 297 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc--CcCCCccc
Confidence 99999988876 3334455554 25788999998889999999999999998766666554 45668899
Q ss_pred EEEEcCCCCEEEEEe
Q psy8748 1915 SCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1915 sLafSPdG~~LaSGS 1929 (2004)
+++|+.+|.+++.+.
T Consensus 298 cc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 298 CCSFNRNGSIFAYAL 312 (347)
T ss_pred eeEecCCCCEEEEEe
Confidence 999999999888653
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=213.10 Aligned_cols=269 Identities=16% Similarity=0.253 Sum_probs=217.3
Q ss_pred cccceeEEEEeC-CCCEEEEEeCCCeEEEEECCC-CceE-EEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1691 HINKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWT-GNKT-QVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1691 Ht~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~T-gk~l-~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
-.+.|.+++||| ...+++.|+.||+||+|+++. |... +....|.++|.+++|+.||..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 357899999999 555667899999999999987 3333 3345689999999999999999999999999999998653
Q ss_pred CCCcceEEEEEecCccceeeeEEeCCC---cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFIDDT---TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV 1844 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafsdd~---~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~ 1844 (2004)
......|.+.+..+.|.++. .+++|+.|.+|+.||.+....+..+ ...+.+.++..- ...++++..
T Consensus 106 -------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~--~LPeRvYa~Dv~--~pm~vVata 174 (347)
T KOG0647|consen 106 -------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL--QLPERVYAADVL--YPMAVVATA 174 (347)
T ss_pred -------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee--eccceeeehhcc--CceeEEEec
Confidence 45667799999999998543 4899999999999999988887665 345667776653 567889999
Q ss_pred CCeEEEEECCCCeEEEEE--ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCcee--EEEcCCC-------CCCCe
Q psy8748 1845 DKSCKLWDFREKKCVQTF--FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQI--ATYLPPN-------KNSGF 1913 (2004)
Q Consensus 1845 DGsIrIWDlrs~k~I~tl--~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i--~t~~~~~-------~~s~I 1913 (2004)
++.|.+|+++++...... ...+-.++|++..++....+.|+-+|.+.|..+..+... ..|..+. .-..|
T Consensus 175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 999999999766432211 123446899999999888899999999999999876332 2222111 12457
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEE
Q psy8748 1914 TSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTS 1970 (2004)
Q Consensus 1914 tsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSg 1970 (2004)
.+++|+|.-..|++++.||++.+||-.....++....|..+|++.+|+.+|.++|-+
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 899999999999999999999999988888888888999999999999999988765
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=231.31 Aligned_cols=252 Identities=17% Similarity=0.322 Sum_probs=206.0
Q ss_pred cccccceeEEEEeCCCC-EEEEEeCCCeEEEEECCCCce----------EEEeeCCCCceEEEEEecCC-CEEEEeecCC
Q psy8748 1689 KGHINKVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGNK----------TQVIPLRSAWVMSVAFAQSG-NFVACGGMDN 1756 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk~----------l~ti~~Ht~~ItsLafSPdg-~~LaSGS~DG 1756 (2004)
--|.+.|+.+.+-|... .+|+++..+.|.|||..+... -.++.+|...-++++|++.. -.+++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 45999999999999555 677788899999999764321 12677888878899999854 5899999999
Q ss_pred eEEEEEcCCCCCC-CcceEEEEEecCccceeeeEEe--CCCcEEEeecCCeEEEEECCC-CceeEEeeccccCCeEEEEE
Q psy8748 1757 MCTVYDLNNRDST-GAAKVIRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLET-GQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1757 tIrVWDl~t~~~~-~~~k~i~sl~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~t-g~~i~~il~~h~~~ItsLaf 1832 (2004)
.|.+||+...... ........+.+|...|..++|. ....|.+++.|+.+.+||.++ .........+|.++|.|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 9999999875542 3355667788999999999998 456799999999999999996 23333556789999999999
Q ss_pred CC-CCCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEEccCCce---------
Q psy8748 1833 SP-DGQYFVTGSVDKSCKLWDFREK-KCVQTFFGHEADVNSVCFHPS-GLAFATGSEDKTARLFDIRADQQ--------- 1900 (2004)
Q Consensus 1833 SP-dg~~LaSGS~DGsIrIWDlrs~-k~I~tl~~h~s~ItsIafSPd-g~~LaSgS~DGtIrIWDLrtgk~--------- 1900 (2004)
+| ++..||+|+.|++|++||+|+. +++.++.+|...|.++.|+|. ...+++++.|+.+.+||+..-..
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 99 6678899999999999999975 467889999999999999995 46788999999999999864222
Q ss_pred ---eEEEcCCCCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECC
Q psy8748 1901 ---IATYLPPNKNSGFTSCAVSSSGRY-IFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1901 ---i~t~~~~~~~s~ItsLafSPdG~~-LaSGSsDGsIrIWDL~ 1940 (2004)
...|...+|...|..+.|+|+..+ |++.+.|+.+.||...
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 223666788889999999997765 5677889999999974
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.3e-20 Score=229.33 Aligned_cols=278 Identities=19% Similarity=0.306 Sum_probs=227.2
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG-NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg-k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
.+|+++-+.++|.|+|.+|++++.||.|++|+.... +....+..+...|.+++.. ++.|++|+.+++|.+|.+..++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 469999999999999999999999999999987665 5555555577777777654 6799999999999999998764
Q ss_pred CCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK 1846 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG 1846 (2004)
.. ..+....-.+.+++++ ++..+++|+.|-.|++.+..+.... ..+.+|.++|.++.|+|++++|++.+.||
T Consensus 88 ~~------~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-~~lrgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 88 ED------TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-KVLRGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred cc------ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-eeecccCCceeeeeEcCCCCEEEEEecCc
Confidence 21 1223345577888888 4567888999999999999887766 45689999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEecC--------CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEE
Q psy8748 1847 SCKLWDFREKKCVQTFFGH--------EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAV 1918 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h--------~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLaf 1918 (2004)
.|++||+.++....++.+- ...+..++|+|+|..+++.+.|+.|++|+..++.....+....+...+.++.|
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence 9999999988776665421 34567789999988888888999999999999999888877777677999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1919 SPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
+|+|.|||+++.||.|.|||+.+.+. ......|++++|.|+++.+-.-..-|...+|
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999999999999987222 2234679999999998876555555544444
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=208.18 Aligned_cols=255 Identities=24% Similarity=0.360 Sum_probs=202.7
Q ss_pred EEEEEecC-CCEEEEee-------cCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEE
Q psy8748 1738 MSVAFAQS-GNFVACGG-------MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVT 1807 (2004)
Q Consensus 1738 tsLafSPd-g~~LaSGS-------~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~I 1807 (2004)
+++.|+|- .++|+++. ..|.+.|.++.... .... .....-.+.+..++|+. .+.+++++.||.+++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~---gi~e-~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl 87 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK---GIQE-CQSYDTEDGLFDVAWSENHENQVIAASGDGSLRL 87 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCC---CeEE-EEeeecccceeEeeecCCCcceEEEEecCceEEE
Confidence 67889983 34444432 35889999886332 1122 22233456778888884 467999999999999
Q ss_pred EECCCCceeEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEEEE
Q psy8748 1808 WNLETGQRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHP-SGLAFATGS 1885 (2004)
Q Consensus 1808 WDl~tg~~i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSP-dg~~LaSgS 1885 (2004)
||..........++.|...|.++.|++ .+..+++++.||+|++||...++.+.++.+|...|....|+| .++.+++++
T Consensus 88 ~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 88 FDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred eccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence 997766655566789999999999998 556788899999999999999999999999999999999999 678999999
Q ss_pred CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-eeeEEEccCCCCeEEEEEcCC
Q psy8748 1886 EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS-SGRYIFCGSDDNNVHVWDLLKT-THNGVLSGHENRVTSISLSPN 1963 (2004)
Q Consensus 1886 ~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP-dG~~LaSGSsDGsIrIWDL~tg-e~l~tL~gHs~~VtsLaFSPD 1963 (2004)
.||++++||++.......+ +.|...+.++.|+. +.+.+++|+.|+.|++||+++. .++..+.+|.-.|..+.|||.
T Consensus 168 gd~~l~lwdvr~~gk~~~i--~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph 245 (311)
T KOG0277|consen 168 GDGTLRLWDVRSPGKFMSI--EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPH 245 (311)
T ss_pred CCceEEEEEecCCCceeEE--EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcc
Confidence 9999999999865444444 45667899999998 6778999999999999999875 467888999999999999995
Q ss_pred -CCEEEEEECCCeEEEEECCCCeEEEEEEeecCCCCcc
Q psy8748 1964 -GMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTI 2000 (2004)
Q Consensus 1964 -g~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~V 2000 (2004)
...|++++.|-++||||...+. ..+.+++.|..=|
T Consensus 246 ~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv 281 (311)
T KOG0277|consen 246 HASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFV 281 (311)
T ss_pred hhhHhhhccccceEEecccccch--hhhhhhhccceEE
Confidence 5679999999999999998543 3344444454433
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=223.67 Aligned_cols=240 Identities=20% Similarity=0.329 Sum_probs=209.4
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC-CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL-RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
.+.|+++.|+++|++|++|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.+|.|..+|++..+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~-- 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH-- 292 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh--
Confidence 57899999999999999999999999999999999999998 99999999998 88999999999999999987542
Q ss_pred cceEEEEEecCccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC-CCCEEEEEE--CCC
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP-DGQYFVTGS--VDK 1846 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP-dg~~LaSGS--~DG 1846 (2004)
....+.+|...|..+.|+. +.++++|+.|+.+.|||........ .+..|...|.+++|+| ....||+|+ .|+
T Consensus 293 ---~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~-~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 293 ---VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF-TFTEHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred ---hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE-EEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence 2223788999999999995 5569999999999999996666654 4478999999999999 667888875 689
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE--ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATG--SEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSg--S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
.|++||..++..+..+. ....|.++.|++..+-|+++ ..++.|.||+..+.+.+..+ .+|...|..++++|||..
T Consensus 369 ~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l--~gH~~RVl~la~SPdg~~ 445 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL--LGHTSRVLYLALSPDGET 445 (484)
T ss_pred EEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee--cCCcceeEEEEECCCCCE
Confidence 99999999999888774 46789999999988776664 45678999999998888777 467788999999999999
Q ss_pred EEEEeCCCeEEEEECCCC
Q psy8748 1925 IFCGSDDNNVHVWDLLKT 1942 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tg 1942 (2004)
+++|+.|.++++|++-..
T Consensus 446 i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 446 IVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEecccCcEEeccccCC
Confidence 999999999999998654
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.5e-21 Score=228.94 Aligned_cols=343 Identities=18% Similarity=0.208 Sum_probs=246.8
Q ss_pred cccccccCCCCC-CccCCCCCCCCCCCCCCCCCCCCC---CCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCccccc
Q psy8748 1517 VLKKRWRKPRTP-NNYNVQGDASNPADTADIPTNAPE---PCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLL 1592 (2004)
Q Consensus 1517 ~L~~r~~k~~~~-~~yni~p~~~~~~ds~~~pt~a~e---~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~ 1592 (2004)
-|++|.++...+ ++.++.|.++++.++.++|+...- +|++.|+|++.+|.|.|||+ |+.||+||||++.+
T Consensus 358 YL~PR~rK~rlniDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlas-GsdDGtvriWEi~T----- 431 (733)
T KOG0650|consen 358 YLAPRVRKMRLNIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLAS-GSDDGTVRIWEIAT----- 431 (733)
T ss_pred hhCcccccceecCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeee-cCCCCcEEEEEeec-----
Confidence 467777876655 778899999999999999987664 49999999999999999999 99999999999999
Q ss_pred chhhhcccceeeEeecccccccccccCccccccccCCCCcchhhhhHhHHH-------HH--HHHHHHHHHhHHHhhhhh
Q psy8748 1593 DPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSINIYLKLQTAE-------LK--KELTQLIDKCKEEQAKQA 1663 (2004)
Q Consensus 1593 ~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSidi~i~~~~~q-------l~--k~i~ql~s~l~~~~~~~~ 1663 (2004)
++|++++.... .++.++|.|.+.+.+.+..-... .. .+.....+.+... .
T Consensus 432 --------gRcvr~~~~d~---------~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~----~ 490 (733)
T KOG0650|consen 432 --------GRCVRTVQFDS---------EIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASA----P 490 (733)
T ss_pred --------ceEEEEEeecc---------eeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcC----C
Confidence 99998886522 12233444444222221111000 00 0000000000000 0
Q ss_pred ccccccccCCCCCCCc--ccccccccccccccceeEEEEeCCCCEEEEEeCC---CeEEEEECCCCceEEEeeCCCCceE
Q psy8748 1664 DTKLEDVTASMPDAPK--VKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLD---GKLIIWDTWTGNKTQVIPLRSAWVM 1738 (2004)
Q Consensus 1664 ~~~~se~~~s~~~~~~--lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~D---GtIrVWDl~Tgk~l~ti~~Ht~~It 1738 (2004)
................ -.-.-++..-.|...|+.+.|+..|.||++...+ ..|.|+++..+.....|....+.|.
T Consensus 491 ~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq 570 (733)
T KOG0650|consen 491 NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQ 570 (733)
T ss_pred CccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCcee
Confidence 0000000000000000 0001133445689999999999999999987654 5699999988877777777788899
Q ss_pred EEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeE
Q psy8748 1739 SVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIH 1817 (2004)
Q Consensus 1739 sLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~ 1817 (2004)
++.|+|...++++++.. .|++||+... ...+.+......+..++.++ +..++.|+.|+.++.+|+.-+....
T Consensus 571 ~v~FHPs~p~lfVaTq~-~vRiYdL~kq------elvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy 643 (733)
T KOG0650|consen 571 RVKFHPSKPYLFVATQR-SVRIYDLSKQ------ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY 643 (733)
T ss_pred EEEecCCCceEEEEecc-ceEEEehhHH------HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh
Confidence 99999999999888764 5999999753 33444555566778888875 5679999999999999999887776
Q ss_pred EeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECC------CC---eEEEEEecCCCC----eEEEEEeCCCCEEEEE
Q psy8748 1818 EVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR------EK---KCVQTFFGHEAD----VNSVCFHPSGLAFATG 1884 (2004)
Q Consensus 1818 ~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlr------s~---k~I~tl~~h~s~----ItsIafSPdg~~LaSg 1884 (2004)
+....|...+++++||+.-.+|++|+.||++.|+.-. .. -+++.+.+|... |....|+|...+++++
T Consensus 644 k~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsA 723 (733)
T KOG0650|consen 644 KTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSA 723 (733)
T ss_pred HHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEec
Confidence 7778899999999999999999999999999998532 11 246677788655 8899999999999999
Q ss_pred ECCCeEEEE
Q psy8748 1885 SEDKTARLF 1893 (2004)
Q Consensus 1885 S~DGtIrIW 1893 (2004)
+.||+|++|
T Consensus 724 GAd~tirlf 732 (733)
T KOG0650|consen 724 GADGTIRLF 732 (733)
T ss_pred CCCceEEee
Confidence 999999998
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-20 Score=216.59 Aligned_cols=251 Identities=24% Similarity=0.368 Sum_probs=205.5
Q ss_pred CCCCceEEEEEecCC-CEEEEeecCCeEEEEEcCCCCCCC----cceEEEEEecCccceeeeEEe--CCCcEEEeecCCe
Q psy8748 1732 LRSAWVMSVAFAQSG-NFVACGGMDNMCTVYDLNNRDSTG----AAKVIRELLGYEGFLSSCRFI--DDTTLLTGSGDMK 1804 (2004)
Q Consensus 1732 ~Ht~~ItsLafSPdg-~~LaSGS~DGtIrVWDl~t~~~~~----~~k~i~sl~gh~~~Vssvafs--dd~~LlSgS~DGt 1804 (2004)
.|.+.|+.+.+.|.. ..+++++..+.|.|||..+..... .......+.+|.+.-.++.|+ ....+++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 488999999999965 466777888999999997653322 234445778888877778887 4567999999999
Q ss_pred EEEEECCCCce------eEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECC--CCeEEEEEecCCCCeEEEEEe
Q psy8748 1805 IVTWNLETGQR------IHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFR--EKKCVQTFFGHEADVNSVCFH 1875 (2004)
Q Consensus 1805 I~IWDl~tg~~------i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlr--s~k~I~tl~~h~s~ItsIafS 1875 (2004)
|++||+..... ....+.+|...|..++|++ +...|++++.|+.+.|||+| +.++.....+|.++|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 99999975443 3455789999999999999 56688999999999999999 566677788999999999999
Q ss_pred C-CCCEEEEEECCCeEEEEEccCCce-eEEEcCCCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCC----------
Q psy8748 1876 P-SGLAFATGSEDKTARLFDIRADQQ-IATYLPPNKNSGFTSCAVSSS-GRYIFCGSDDNNVHVWDLLKT---------- 1942 (2004)
Q Consensus 1876 P-dg~~LaSgS~DGtIrIWDLrtgk~-i~t~~~~~~~s~ItsLafSPd-G~~LaSGSsDGsIrIWDL~tg---------- 1942 (2004)
| ++..|++|+.|++|.+||+|+.+. +.++ .+|...|.++.|+|. ...+++++.|+.+.|||+...
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~--e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTF--EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceec--cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 9 667789999999999999998655 3333 677889999999995 568888999999999999542
Q ss_pred ----eeeEEEccCCCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCC
Q psy8748 1943 ----THNGVLSGHENRVTSISLSPNGMA-LVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1943 ----e~l~tL~gHs~~VtsLaFSPDg~~-LaSgS~DGtIrIWdlstg 1984 (2004)
+.+..-.||...|..+.|+|+..+ ++|.+.|+.+.||+....
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 234566789999999999998776 677899999999998853
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=205.27 Aligned_cols=268 Identities=19% Similarity=0.267 Sum_probs=217.9
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
.+.|.++.|+|.++.|++++.||.+++||+........++ |..++.+++|.+ ...+++|+.||.|+.+|++++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~---- 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN---- 86 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCc----
Confidence 5789999999999999999999999999998875555554 889999999985 6788999999999999998753
Q ss_pred ceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrI 1850 (2004)
...+..|...+.|+.+. ..+.+++|++|+.|++||.+........ .....|.++... |+.|++|+.|..+.+
T Consensus 87 ---~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~--d~~kkVy~~~v~--g~~LvVg~~~r~v~i 159 (323)
T KOG1036|consen 87 ---EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF--DQGKKVYCMDVS--GNRLVVGTSDRKVLI 159 (323)
T ss_pred ---ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc--ccCceEEEEecc--CCEEEEeecCceEEE
Confidence 34456788999999998 4567999999999999999875444333 334478888776 789999999999999
Q ss_pred EECCCCeEEEEE--ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCC----ceeEEEcCCC-------CCCCeEEEE
Q psy8748 1851 WDFREKKCVQTF--FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRAD----QQIATYLPPN-------KNSGFTSCA 1917 (2004)
Q Consensus 1851 WDlrs~k~I~tl--~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtg----k~i~t~~~~~-------~~s~ItsLa 1917 (2004)
||+++....... ...+..++|+++.|++.-+++++-||+|.+=.++.. +....|..+. ...+|.+++
T Consensus 160 yDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 160 YDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred EEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 999976543322 234567899999998888999999999988766554 2222221111 124688999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEEC
Q psy8748 1918 VSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1918 fSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
|+|-...+++|+.||.|.+||+.+.+.+..+......|..++|+.+|..||.++.
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999999999999999999999988888888999999999999999864
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-19 Score=223.39 Aligned_cols=232 Identities=16% Similarity=0.258 Sum_probs=181.4
Q ss_pred eecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCce-------eEEeecc
Q psy8748 1752 GGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQR-------IHEVAQA 1822 (2004)
Q Consensus 1752 GS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~-------i~~il~~ 1822 (2004)
|+.+|.|++|+.... .....+.+|.+.|.++.|++. ..+++|+.||.|++||+.++.. ....+.+
T Consensus 50 GG~~gvI~L~~~~r~------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g 123 (568)
T PTZ00420 50 GGLIGAIRLENQMRK------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG 123 (568)
T ss_pred CCceeEEEeeecCCC------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec
Confidence 566788999987542 456778899999999999964 6799999999999999986432 1123568
Q ss_pred ccCCeEEEEECCCCCE-EEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCcee
Q psy8748 1823 HIGDVVSISLSPDGQY-FVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQI 1901 (2004)
Q Consensus 1823 h~~~ItsLafSPdg~~-LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i 1901 (2004)
|...|.+++|+|++.. +++++.||.|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++++.+
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 9999999999998875 5688999999999999998777764 5678999999999999999999999999999999888
Q ss_pred EEEcCCCCCCCe-----EEEEEcCCCCEEEEEeCCC----eEEEEECCC-CeeeEEEc--cCCCCeEEEEEcCCCCEEEE
Q psy8748 1902 ATYLPPNKNSGF-----TSCAVSSSGRYIFCGSDDN----NVHVWDLLK-TTHNGVLS--GHENRVTSISLSPNGMALVT 1969 (2004)
Q Consensus 1902 ~t~~~~~~~s~I-----tsLafSPdG~~LaSGSsDG----sIrIWDL~t-ge~l~tL~--gHs~~VtsLaFSPDg~~LaS 1969 (2004)
..+.. |.+.+ ....|++++.+|++++.|+ +|++||+++ +.++..+. .+.+.+......++|.++++
T Consensus 203 ~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 203 SSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred EEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE
Confidence 77743 33332 2334568999999887764 799999985 55555543 23344444445567999999
Q ss_pred EECCCeEEEEECCCCeEEEEEEee
Q psy8748 1970 SSWDQFVKVWQESNTIVWKVLKVY 1993 (2004)
Q Consensus 1970 gS~DGtIrIWdlstg~l~k~Ik~~ 1993 (2004)
|+.|+.|++|++..+. ...+..+
T Consensus 281 GkGD~tIr~~e~~~~~-~~~l~~~ 303 (568)
T PTZ00420 281 GKGDGNCRYYQHSLGS-IRKVNEY 303 (568)
T ss_pred EECCCeEEEEEccCCc-EEeeccc
Confidence 9999999999998774 3334433
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-18 Score=198.91 Aligned_cols=254 Identities=15% Similarity=0.139 Sum_probs=188.7
Q ss_pred eeEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEe-ecCCeEEEEEcCCCCCCCcc
Q psy8748 1695 VNSVHYSGDSRHC-VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACG-GMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1695 VtsLaFSPDG~~L-ASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSG-S~DGtIrVWDl~t~~~~~~~ 1772 (2004)
+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.+++||+.+.
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~------ 105 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETR------ 105 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCC------
Confidence 5679999999976 5677889999999999988877765544 5678999999977654 56899999999753
Q ss_pred eEEEEEecCccceeeeEEeCCCc-EEEeecCC-eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-CCCeEE
Q psy8748 1773 KVIRELLGYEGFLSSCRFIDDTT-LLTGSGDM-KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDKSCK 1849 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafsdd~~-LlSgS~DG-tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DGsIr 1849 (2004)
.....+. ....+..+.+.+++. ++++..++ .+.+||..+++...... ....+.+++|+++++++++++ .+|.|+
T Consensus 106 ~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 182 (300)
T TIGR03866 106 KVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVS 182 (300)
T ss_pred eEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEE
Confidence 2233332 223356778876554 55565554 57788998877654442 233467899999999886554 589999
Q ss_pred EEECCCCeEEEEEecCC-------CCeEEEEEeCCCCEEEEE-ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCC
Q psy8748 1850 LWDFREKKCVQTFFGHE-------ADVNSVCFHPSGLAFATG-SEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1850 IWDlrs~k~I~tl~~h~-------s~ItsIafSPdg~~LaSg-S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPd 1921 (2004)
+||+++++.+..+..+. .....++|+|++++++++ +.++.+.+||.++++...... ....+.+++|+|+
T Consensus 183 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~ 259 (300)
T TIGR03866 183 VIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL---VGQRVWQLAFTPD 259 (300)
T ss_pred EEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE---eCCCcceEEECCC
Confidence 99999988776654221 123468899999986554 456789999999887765542 2246889999999
Q ss_pred CCEEEEEe-CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcC
Q psy8748 1922 GRYIFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP 1962 (2004)
Q Consensus 1922 G~~LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSP 1962 (2004)
|++|++++ .+|.|++||+.+++++..+... ...++++++|
T Consensus 260 g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 260 EKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 99998864 5899999999999999988754 5568888865
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=212.96 Aligned_cols=259 Identities=22% Similarity=0.410 Sum_probs=224.4
Q ss_pred CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCC
Q psy8748 1735 AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETG 1813 (2004)
Q Consensus 1735 ~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg 1813 (2004)
..+.++...+..+.+.+|+.|..+.++|...+ .....+.||...|+.+.++++. .+++++.|..|++|.....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence 35788888888789999999999999998754 5677889999999999999665 4888999999999998776
Q ss_pred ceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEec--CCCCeEEEEEeCCCCEEEEEECCCeEE
Q psy8748 1814 QRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG--HEADVNSVCFHPSGLAFATGSEDKTAR 1891 (2004)
Q Consensus 1814 ~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~--h~s~ItsIafSPdg~~LaSgS~DGtIr 1891 (2004)
... .....|..+|+.+..+|.|.||++++.||+..+.|++++..+..... ..-.+++.+|+|||..|.+|..||.|+
T Consensus 294 s~~-~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vk 372 (506)
T KOG0289|consen 294 SEP-TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVK 372 (506)
T ss_pred cCc-cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEE
Confidence 654 45678999999999999999999999999999999999988766543 334689999999999999999999999
Q ss_pred EEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC-CCCeEEEEEcCCCCEEEEE
Q psy8748 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH-ENRVTSISLSPNGMALVTS 1970 (2004)
Q Consensus 1892 IWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH-s~~VtsLaFSPDg~~LaSg 1970 (2004)
|||+.++.....| ++|.++|..++|+.+|.|++++++|+.|++||+++.+..+++.-. ..+|.++.|.+.|.+|+.+
T Consensus 373 iwdlks~~~~a~F--pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 373 IWDLKSQTNVAKF--PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EEEcCCccccccC--CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 9999999888777 568899999999999999999999999999999999888877543 3479999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1971 SWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1971 S~DGtIrIWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
|.|=+|++++-.+. .|..+..+..|.+-.++|
T Consensus 451 g~~l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v 482 (506)
T KOG0289|consen 451 GSDLQVYICKKKTK-SWTEIKELADHSGLSTGV 482 (506)
T ss_pred cceeEEEEEecccc-cceeeehhhhccccccee
Confidence 98877777776554 599999888887655554
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=218.08 Aligned_cols=342 Identities=18% Similarity=0.260 Sum_probs=266.1
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
-.+|.+.|.++.|+|.|..|.+ ++.|.++.||.-.+ .. ..|.. ..
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLS-ASaDksmiiW~pd~-------------~t--GiWv~-----------~v-------- 307 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLS-ASADKSMIIWKPDE-------------NT--GIWVD-----------VV-------- 307 (764)
T ss_pred hcCcccceEEEEEccchhhhee-cccCcceEEEecCC-------------cc--ceEEE-----------EE--------
Confidence 3479999999999999998888 99999999999877 00 01100 00
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
....+.|..++-.+.-|+|++..+++-
T Consensus 308 -----------------------------------------------------RlGe~gg~a~GF~g~lw~~n~~~ii~~ 334 (764)
T KOG1063|consen 308 -----------------------------------------------------RLGEVGGSAGGFWGGLWSPNSNVIIAH 334 (764)
T ss_pred -----------------------------------------------------EeecccccccceeeEEEcCCCCEEEEe
Confidence 011122455678899999999999999
Q ss_pred eCCCeEEEEECCCC---ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceee
Q psy8748 1711 SLDGKLIIWDTWTG---NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tg---k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vss 1787 (2004)
|..|..++|..++. .....+.+|.+.|.+++|+|.|.++++++.|.+-+++---..+ .....+...+-|.....|
T Consensus 335 g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q--~~wHEiaRPQiHGyDl~c 412 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ--QEWHEIARPQIHGYDLTC 412 (764)
T ss_pred cccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccc--cceeeeccccccccccee
Confidence 99999999983332 2334568999999999999999999999999999998765222 124445555668888999
Q ss_pred eEEeC-CCcEEEeecCCeEEEEECCC-------------------------------------------Cce----e---
Q psy8748 1788 CRFID-DTTLLTGSGDMKIVTWNLET-------------------------------------------GQR----I--- 1816 (2004)
Q Consensus 1788 vafsd-d~~LlSgS~DGtI~IWDl~t-------------------------------------------g~~----i--- 1816 (2004)
+.+.+ +..+++|.+...+++|+... |.. .
T Consensus 413 ~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~ 492 (764)
T KOG1063|consen 413 LSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP 492 (764)
T ss_pred eehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence 99988 66688888888888886421 000 0
Q ss_pred -------------------------EEeeccccCCeEEEEECCCCCEEEEEECCC-----eEEEEECCCCeEEEEEecCC
Q psy8748 1817 -------------------------HEVAQAHIGDVVSISLSPDGQYFVTGSVDK-----SCKLWDFREKKCVQTFFGHE 1866 (2004)
Q Consensus 1817 -------------------------~~il~~h~~~ItsLafSPdg~~LaSGS~DG-----sIrIWDlrs~k~I~tl~~h~ 1866 (2004)
...+.+|...|.+++.+|+|+++++++... .|++|+..+...+..+.+|.
T Consensus 493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs 572 (764)
T KOG1063|consen 493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS 572 (764)
T ss_pred cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc
Confidence 001357888999999999999999988654 59999999998888999999
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeE-EE-cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--
Q psy8748 1867 ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIA-TY-LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT-- 1942 (2004)
Q Consensus 1867 s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~-t~-~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg-- 1942 (2004)
-.|+.++|+|||++|++.+.|.++.+|....+.... .+ ....|..-|..+.|+|++.++++++.|.+|++|.....
T Consensus 573 LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d 652 (764)
T KOG1063|consen 573 LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD 652 (764)
T ss_pred eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh
Confidence 999999999999999999999999999975432211 11 14567778999999999999999999999999998776
Q ss_pred eeeEE--EccCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECC
Q psy8748 1943 THNGV--LSGHENRVTSISLSP-----NGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1943 e~l~t--L~gHs~~VtsLaFSP-----Dg~~LaSgS~DGtIrIWdls 1982 (2004)
+.+.. ...+...|+.++|.| .+..++.|-..|.|.+|+..
T Consensus 653 ~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 653 KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 43333 345889999999976 23367888889999999966
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=213.22 Aligned_cols=283 Identities=19% Similarity=0.278 Sum_probs=228.2
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECC--CCceEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTW--TGNKTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDS 1768 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~--Tgk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~ 1768 (2004)
.++|+++.|+|....+++||.||+++||.+. ....++.+.....+|.+.+|.|+|. .+++++.....+.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak- 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK- 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc-
Confidence 5789999999999999999999999999764 3456777777889999999999999 99999999999999998753
Q ss_pred CCcceEEEEEecCc-cceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC
Q psy8748 1769 TGAAKVIRELLGYE-GFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK 1846 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~-~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG 1846 (2004)
...+....++. ..+.....+ +++.++..+..|.|.+....+++.+..+ .-.+.|..++|+.+++.|++++.+|
T Consensus 292 ---~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~--KieG~v~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 292 ---VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF--KIEGVVSDFTFSSDSKELLASGGTG 366 (514)
T ss_pred ---cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee--eeccEEeeEEEecCCcEEEEEcCCc
Confidence 22223333333 223333333 5667889999999999999999888666 4567899999999999999999999
Q ss_pred eEEEEECCCCeEEEEEecCCC-CeEEEEEeCCCCEEEEEECCCeEEEEEccCC------ceeEEEcCCCCCCCeEEEEEc
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEA-DVNSVCFHPSGLAFATGSEDKTARLFDIRAD------QQIATYLPPNKNSGFTSCAVS 1919 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s-~ItsIafSPdg~~LaSgS~DGtIrIWDLrtg------k~i~t~~~~~~~s~ItsLafS 1919 (2004)
.|++||++...++..+....+ .-+++|.++++.+|++|+..|.|.|||.++. +++..+ .+-...|+++.|+
T Consensus 367 eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~--dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV--DNLTTAITSLQFN 444 (514)
T ss_pred eEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh--hhhheeeeeeeeC
Confidence 999999999998888864332 3457788899999999999999999996532 222222 3445679999999
Q ss_pred CCCCEEEEEeC--CCeEEEEECCCCeeeEEEcc---CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1920 SSGRYIFCGSD--DNNVHVWDLLKTTHNGVLSG---HENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1920 PdG~~LaSGSs--DGsIrIWDL~tge~l~tL~g---Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
+|+.+||.++. +..+++-.+.+......+.. .-+.|+|++|+|.|.++|.|..+|.|.+|.+.
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999998875 56799999887776666543 33568999999999999999999999999874
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-20 Score=218.10 Aligned_cols=282 Identities=21% Similarity=0.320 Sum_probs=231.9
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc---eEEEee--CCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN---KTQVIP--LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk---~l~ti~--~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
-.|..-|.++++|...++++|||. |.|+|||+.... .+..+. .....|+++...|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 358899999999999999999986 789999986542 222222 24578999999999999999999999999999
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
.... ..+...+......+..++.+++ +..++++.||.|.+||+.+...+ +.+.+|.+.+.||.++++|..|++|
T Consensus 495 AapT----prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V-rqfqGhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 495 AAPT----PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV-RQFQGHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred cCCC----cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee-ecccCCCCCceeEEecCCCceeecC
Confidence 7642 2233333333344555666655 45788999999999999987766 5568999999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
+-|++|+.||+++++.+... .....|.++.++|++.++++|-.++.+.+....... ++..+.|...|.++.|.+.|
T Consensus 570 GlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~---kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE---KYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred CCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCcc---ceeecccccEEEEEEecccC
Confidence 99999999999998765543 335789999999999999999999999888865333 33346777889999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
+++++.+.|+-+..|...-|..+...+ ....|.++.++.|.++++||+.|....||.+
T Consensus 646 kwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999999998888877765 4678999999999999999999988888865
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-20 Score=216.59 Aligned_cols=267 Identities=22% Similarity=0.349 Sum_probs=214.2
Q ss_pred CeEEEEECCCCceEEEeeCCC-CceEEEEEecCCCEEEEee-cCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRS-AWVMSVAFAQSGNFVACGG-MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht-~~ItsLafSPdg~~LaSGS-~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.++.+||+.+|.....+++.. ..-.++..- .+.+++++. ....+.+|.+....... ...-..+.+.++..+
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~------q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV------QYIVLPGPVHALASS 90 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh------hhcccccceeeeecC
Confidence 569999999999999888652 222222211 235555554 44689999987543111 223345678888888
Q ss_pred CCCcEEEee-cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECC---------CCeEEEE
Q psy8748 1792 DDTTLLTGS-GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR---------EKKCVQT 1861 (2004)
Q Consensus 1792 dd~~LlSgS-~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlr---------s~k~I~t 1861 (2004)
+.+.++.++ ..|.|++|.+.+|..+. ++.+|-..|+|+.|+-||.+|++|+.||.|.+|++. +.++...
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~-v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLN-VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHH-HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 777655555 99999999999999884 448999999999999999999999999999999763 3467888
Q ss_pred EecCCCCeEEEEEeCC--CCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1862 FFGHEADVNSVCFHPS--GLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1862 l~~h~s~ItsIafSPd--g~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
+..|.-+|+.+...+. ..+++++|.|.++++||+..+..+.++..+ ..+.+++.+|-++.+++|+.+|.|.+.++
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp---~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP---SSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC---CcceeEEEcccccEEEecCCcceEEeeeh
Confidence 9999999999988765 457999999999999999999998888554 56899999999999999999999999887
Q ss_pred CC----------------CeeeEEEccCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1940 LK----------------TTHNGVLSGHEN--RVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1940 ~t----------------ge~l~tL~gHs~--~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
.. +..+..+.||.+ .|+|++++-||..|++|+.||.|+|||+.+.++++.+.
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 43 234556778988 99999999999999999999999999999986665555
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=204.82 Aligned_cols=286 Identities=13% Similarity=0.261 Sum_probs=224.1
Q ss_pred eeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceE
Q psy8748 1695 VNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1695 VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
-.|+.|++.|.+||+|+.||.|.|||+.|....+.+.+|..+|++++|+++|+.|++++.|..|++||+..+. .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs------~ 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS------P 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC------c
Confidence 7899999999999999999999999999999888999999999999999999999999999999999998763 2
Q ss_pred EEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEeec-cc----cCCeEEEEECCCCCEEEEEECCCe
Q psy8748 1775 IRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQ-AH----IGDVVSISLSPDGQYFVTGSVDKS 1847 (2004)
Q Consensus 1775 i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~-~h----~~~ItsLafSPdg~~LaSGS~DGs 1847 (2004)
.+. .....+|..+.|++. +.+++.-.+..-.+.++..+.. ..+. .. .....+..|++.|+++++|...|.
T Consensus 100 l~r-irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 100 LKR-IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred eeE-EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 222 234678888888854 3455554444445555544222 1111 11 111233468899999999999999
Q ss_pred EEEEECCCCeEEEEEecCC-CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCcee---------EEEcCCCCCCCeEEEE
Q psy8748 1848 CKLWDFREKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQI---------ATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1848 IrIWDlrs~k~I~tl~~h~-s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i---------~t~~~~~~~s~ItsLa 1917 (2004)
+.++|..+.+++..++-.. ..|..+.++..|+.|+..+.|..|+.|+++.-... .++..--....-.+++
T Consensus 177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 9999999999998887666 78999999999999999999999999998621111 1111111223456899
Q ss_pred EcCCCCEEEEEeCC-CeEEEEECCCCeeeEEEccCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q psy8748 1918 VSSSGRYIFCGSDD-NNVHVWDLLKTTHNGVLSGHE-NRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVL 1990 (2004)
Q Consensus 1918 fSPdG~~LaSGSsD-GsIrIWDL~tge~l~tL~gHs-~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~I 1990 (2004)
|+.+|.|+++|+.. ..++||....|..++.+.|.. ....++.|+|-...+++- ..|.|+||.......|..+
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~enwsaf 330 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVENWSAF 330 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccchhhc
Confidence 99999999988753 569999999999999999877 568899999999888887 6899999998776666544
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-19 Score=201.52 Aligned_cols=265 Identities=17% Similarity=0.300 Sum_probs=215.3
Q ss_pred ccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCC--EEEEeecCCe
Q psy8748 1680 VKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN--FVACGGMDNM 1757 (2004)
Q Consensus 1680 lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~--~LaSGS~DGt 1757 (2004)
..+.+...+..|.+.|+++|.+ +.|+|+||.|-+|+|||..+...+..+-.|.+.|+++.|.+.-. .|++|+.||.
T Consensus 31 ~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 4556788899999999999976 89999999999999999999999999999999999999998765 9999999999
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
|.+|+.. .+.....+.+|.+.|+.++.++.+. .++.+.|+.++.||+-+|+.-...... ...+.+.|+|.|
T Consensus 109 i~iw~~~------~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~G 180 (362)
T KOG0294|consen 109 IIIWRVG------SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQG 180 (362)
T ss_pred EEEEEcC------CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCC
Confidence 9999986 4688899999999999999998776 567899999999999998865444323 334559999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
.+|+.++.+ .|-||.+.+......+.. ...+.|+.|. ++..+++|+.|+.|.+||..+..+...+ ..|...|..+
T Consensus 181 d~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~--~AH~~RVK~i 255 (362)
T KOG0294|consen 181 DHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF--LAHENRVKDI 255 (362)
T ss_pred CEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceee--ecchhheeee
Confidence 999998865 699999887765554432 3456677665 5668999999999999999987777766 4666778887
Q ss_pred EE--cCCCCEEEEEeCCCeEEEEECCCC-----eeeEEEccCCCCeEEEEE
Q psy8748 1917 AV--SSSGRYIFCGSDDNNVHVWDLLKT-----THNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1917 af--SPdG~~LaSGSsDGsIrIWDL~tg-----e~l~tL~gHs~~VtsLaF 1960 (2004)
.+ .|++.+|++++.||.|+|||++.. +.+..+.. ..+++|+..
T Consensus 256 ~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred EEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 74 457889999999999999998655 23333332 455666654
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-18 Score=201.16 Aligned_cols=303 Identities=17% Similarity=0.229 Sum_probs=233.2
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCC----
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS---- 1768 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~---- 1768 (2004)
.-|.|++|.++|+ ++||..+|.|.||+..+.+..+....|++.|.+++...+|..+- |+.|..|..||-+-...
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~e 324 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETE 324 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccccccccccc
Confidence 4689999999997 88999999999999888787777779999999999998888766 99999999999321110
Q ss_pred ----CCcce--------------------------EEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeE
Q psy8748 1769 ----TGAAK--------------------------VIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIH 1817 (2004)
Q Consensus 1769 ----~~~~k--------------------------~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~ 1817 (2004)
.+..+ ......+|......++.. ..+.+++++.|+.+++|+ ..+...
T Consensus 325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w 402 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW 402 (626)
T ss_pred CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE
Confidence 00000 011223444555555555 345799999999999999 334333
Q ss_pred EeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC
Q psy8748 1818 EVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1818 ~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt 1897 (2004)
.. ....++.|+.|+|.| .++.|+..|...+.|.++...+..-.. ..++++++|+|+|.+|++|+.|+.|++|.+..
T Consensus 403 t~--~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 403 TK--IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred EE--EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 32 345778999999999 999999999999999998665554444 89999999999999999999999999999987
Q ss_pred CceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE--------------E----ccCCCCeEEEE
Q psy8748 1898 DQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGV--------------L----SGHENRVTSIS 1959 (2004)
Q Consensus 1898 gk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~t--------------L----~gHs~~VtsLa 1959 (2004)
+..........+...|+.+.|++|++++.+-+.|-.|..|.......... + ..|...|..++
T Consensus 479 ~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~ 558 (626)
T KOG2106|consen 479 NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVA 558 (626)
T ss_pred CCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhh
Confidence 66655555555558999999999999999999999999994322111111 1 13556677778
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1960 LSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1960 FSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
-+.+.+++++|.+.|+|++|...-...-...-.+..|.+.|+||
T Consensus 559 rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V 602 (626)
T KOG2106|consen 559 RSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNV 602 (626)
T ss_pred hhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEE
Confidence 88889999999999999999987554445555667788888876
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-19 Score=200.46 Aligned_cols=283 Identities=19% Similarity=0.294 Sum_probs=217.7
Q ss_pred cccccceeEEEEeC-CCCEEEEEeCCCeEEEEECCCCce----------EE-----EeeCCCCceEEEEEec-CCCEEEE
Q psy8748 1689 KGHINKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWTGNK----------TQ-----VIPLRSAWVMSVAFAQ-SGNFVAC 1751 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~Tgk~----------l~-----ti~~Ht~~ItsLafSP-dg~~LaS 1751 (2004)
+.|.+.|+++.+.+ .|+|+++|+.||.|.|||++.... .. .-.+|...|.++.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45899999999997 788999999999999999875431 11 1135788899999999 6668889
Q ss_pred eecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC----CCcEEEeecCCeEEEEECCCCceeEEeeccccCCe
Q psy8748 1752 GGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID----DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDV 1827 (2004)
Q Consensus 1752 GS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd----d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~I 1827 (2004)
++.|.+++|||.++.+... .....+.|..-++++ ...+++|+.+-.|++.|+.+|... ..+.+|.+.|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~-------~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-H~LsGHr~~v 191 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAV-------DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-HTLSGHRDGV 191 (397)
T ss_pred ccccceEEEeecccceeeE-------EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce-eeeccccCce
Confidence 9999999999998753211 122334444444442 234778888999999999999987 4558999999
Q ss_pred EEEEECCCCC-EEEEEECCCeEEEEECCCC-eEEEEE--------------ecCCCCeEEEEEeCCCCEEEEEECCCeEE
Q psy8748 1828 VSISLSPDGQ-YFVTGSVDKSCKLWDFREK-KCVQTF--------------FGHEADVNSVCFHPSGLAFATGSEDKTAR 1891 (2004)
Q Consensus 1828 tsLafSPdg~-~LaSGS~DGsIrIWDlrs~-k~I~tl--------------~~h~s~ItsIafSPdg~~LaSgS~DGtIr 1891 (2004)
.++.|+|... .|++|+.||.|++||++.. .+...+ ..|.+.+.+++|..++.++++++.|.+++
T Consensus 192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR 271 (397)
T ss_pred EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence 9999999776 5678999999999999854 223222 35778899999999999999999999999
Q ss_pred EEEccCCceeEEE-cCCCCC----CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCE
Q psy8748 1892 LFDIRADQQIATY-LPPNKN----SGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMA 1966 (2004)
Q Consensus 1892 IWDLrtgk~i~t~-~~~~~~----s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~ 1966 (2004)
+|+..+|+....- ....+. -.+. +. +-+...++---.++.+.++++-.+..+..+..|-..|.+.++-|+-..
T Consensus 272 ~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~ 349 (397)
T KOG4283|consen 272 VWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQ 349 (397)
T ss_pred EeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhh
Confidence 9999887653222 111111 1111 22 223344444445689999999999999999999999999999999889
Q ss_pred EEEEECCCeEEEEEC
Q psy8748 1967 LVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1967 LaSgS~DGtIrIWdl 1981 (2004)
..+|..|+.|..|..
T Consensus 350 ~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 350 CFTGDMNGNIYMWSP 364 (397)
T ss_pred hhccccCCccccccc
Confidence 999999999999976
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-18 Score=209.79 Aligned_cols=241 Identities=17% Similarity=0.239 Sum_probs=199.9
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
+.|.+++|+ ++..|.+.+.+|.|.-||+.+++....+....+.|.+++.+|.+..++.|+.||.+..++...+ ..
T Consensus 70 rsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~----~I 144 (691)
T KOG2048|consen 70 RSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD----KI 144 (691)
T ss_pred CceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc----eE
Confidence 578899999 4556888889999999999999999999999999999999999999999999997777776543 33
Q ss_pred eEEEEEecCccceeeeEEeCCCc-EEEeecCCeEEEEECCCCceeEEee-------ccccCCeEEEEECCCCCEEEEEEC
Q psy8748 1773 KVIRELLGYEGFLSSCRFIDDTT-LLTGSGDMKIVTWNLETGQRIHEVA-------QAHIGDVVSISLSPDGQYFVTGSV 1844 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafsdd~~-LlSgS~DGtI~IWDl~tg~~i~~il-------~~h~~~ItsLafSPdg~~LaSGS~ 1844 (2004)
...+.+....+.+.++.|.++.. +++|+.||.|++||..+++..+... .....-|+++.|-.+ ..+++|..
T Consensus 145 ~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS 223 (691)
T KOG2048|consen 145 TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDS 223 (691)
T ss_pred EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecC
Confidence 44455556678999999997776 9999999999999999998775221 112334777887755 46899999
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce--eEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1845 DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ--IATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1845 DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~--i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
.|+|.+||...+..+..+..|...|.+++..++++++++++.|++|..|...+++. +.......|...+.+++..++
T Consensus 224 ~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~- 302 (691)
T KOG2048|consen 224 AGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN- 302 (691)
T ss_pred CceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-
Confidence 99999999999999999999999999999999999999999999999998876644 222233456677899998876
Q ss_pred CEEEEEeCCCeEEEEECCC
Q psy8748 1923 RYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~t 1941 (2004)
.+++|+.|+.+.+-..+.
T Consensus 303 -~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 303 -ALISGGRDFTLAICSSRE 320 (691)
T ss_pred -eEEecceeeEEEEccccc
Confidence 899999999999877654
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=219.17 Aligned_cols=246 Identities=19% Similarity=0.278 Sum_probs=207.3
Q ss_pred eCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEEC
Q psy8748 1731 PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNL 1810 (2004)
Q Consensus 1731 ~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl 1810 (2004)
..|+..-+.++|.|+|.+|++++.||.|++|+..... .....+..+...+.+++.. .++|++|+.+++|..|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-----e~P~ti~~~g~~v~~ia~~-s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-----EEPETIDISGELVSSIACY-SNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-----cCCchhhccCceeEEEeec-ccceEEeeccceEEEeeC
Confidence 3578889999999999999999999999999986542 1111122255566666554 448999999999999999
Q ss_pred CCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeE
Q psy8748 1811 ETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTA 1890 (2004)
Q Consensus 1811 ~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtI 1890 (2004)
.+++.- .++....-++.+++|+.+|++++.|+.|-.|++.+..+......+++|.++|.++.|+|++++|++.+.||.|
T Consensus 84 ps~~~~-~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v 162 (933)
T KOG1274|consen 84 PSGEED-TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKV 162 (933)
T ss_pred CCCCcc-ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceE
Confidence 887654 3445567789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCceeEEEcCCCC------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc--CCCCeEEEEEcC
Q psy8748 1891 RLFDIRADQQIATYLPPNK------NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG--HENRVTSISLSP 1962 (2004)
Q Consensus 1891 rIWDLrtgk~i~t~~~~~~------~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g--Hs~~VtsLaFSP 1962 (2004)
++||+.++....++..-.. ...+..++|+|+|..+++...|+.|.+|+...++....+.. +...+.++.|+|
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP 242 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence 9999998877655532111 34567899999988888888999999999999999988854 455599999999
Q ss_pred CCCEEEEEECCCeEEEEECCC
Q psy8748 1963 NGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1963 Dg~~LaSgS~DGtIrIWdlst 1983 (2004)
+|+|||+++.||.|.|||.++
T Consensus 243 nG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCcEEeeeccCCcEEEEeccc
Confidence 999999999999999999994
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=206.02 Aligned_cols=291 Identities=20% Similarity=0.284 Sum_probs=228.2
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1550 APEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1550 a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
+..+-.++|++|.|||.-..|.+ ++.||+++|+.++. +. .+
T Consensus 208 a~~ps~~~I~sv~FHp~~plllv-aG~d~~lrifqvDG--------------------k~---------N~--------- 248 (514)
T KOG2055|consen 208 AAHPSHGGITSVQFHPTAPLLLV-AGLDGTLRIFQVDG--------------------KV---------NP--------- 248 (514)
T ss_pred cCCcCcCCceEEEecCCCceEEE-ecCCCcEEEEEecC--------------------cc---------Ch---------
Confidence 33444568999999999999999 99999999999977 00 00
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCC-EEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSR-HCV 1708 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~-~LA 1708 (2004)
.++.+.--..+|.+.+|.|+|. .++
T Consensus 249 ------------------------------------------------------~lqS~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 249 ------------------------------------------------------KLQSIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred ------------------------------------------------------hheeeeeccCccceeeecCCCceEEE
Confidence 0112222346888999999999 899
Q ss_pred EEeCCCeEEEEECCCCceEEE--eeCCC-CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccce
Q psy8748 1709 SGSLDGKLIIWDTWTGNKTQV--IPLRS-AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL 1785 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~Tgk~l~t--i~~Ht-~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~V 1785 (2004)
++|....++.||+.+++.... ..++. ..+.....++++++|+..|..|.|.+....+++..... ...+.+
T Consensus 275 ~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-------KieG~v 347 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-------KIEGVV 347 (514)
T ss_pred ecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-------eeccEE
Confidence 999999999999988865443 33333 45777888999999999999999999988765432222 235677
Q ss_pred eeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECC------CCeE
Q psy8748 1786 SSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR------EKKC 1858 (2004)
Q Consensus 1786 ssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlr------s~k~ 1858 (2004)
..+.|+ ++..+++++.+|.|++||++...++++......-.-++++.++++.+|++|+..|.|.|||.+ ..++
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCc
Confidence 788887 455688899999999999999988877765554456778888999999999999999999965 3456
Q ss_pred EEEEecCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEEccCCceeEEEcCCC-CCCCeEEEEEcCCCCEEEEEeCCCeEE
Q psy8748 1859 VQTFFGHEADVNSVCFHPSGLAFATGSE--DKTARLFDIRADQQIATYLPPN-KNSGFTSCAVSSSGRYIFCGSDDNNVH 1935 (2004)
Q Consensus 1859 I~tl~~h~s~ItsIafSPdg~~LaSgS~--DGtIrIWDLrtgk~i~t~~~~~-~~s~ItsLafSPdG~~LaSGSsDGsIr 1935 (2004)
+..+......|+++.|++++..++.+|. +..+++-.+.+......+...+ .-+.++|++|+|.|.++|.|..+|.+.
T Consensus 428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence 7777777788999999999999888775 5668888877665555553332 235689999999999999999999999
Q ss_pred EEECC
Q psy8748 1936 VWDLL 1940 (2004)
Q Consensus 1936 IWDL~ 1940 (2004)
+|.+.
T Consensus 508 l~kL~ 512 (514)
T KOG2055|consen 508 LFKLH 512 (514)
T ss_pred eEeec
Confidence 99864
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=199.75 Aligned_cols=249 Identities=21% Similarity=0.246 Sum_probs=207.1
Q ss_pred cccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEeeCCCCceEEEEEec--CCCEEEEeecCCeEEEE
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG---NKTQVIPLRSAWVMSVAFAQ--SGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg---k~l~ti~~Ht~~ItsLafSP--dg~~LaSGS~DGtIrVW 1761 (2004)
.-.+|.+.|.++...--|+.|||++.|++|+|+..... +.+.++.+|.++|..++|.. .|.+|++++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34579999999998888999999999999999998764 45778899999999999965 79999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCCc---EEEeecCCeEEEEECCCC--ceeEEeeccccCCeEEEEECCC-
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT---LLTGSGDMKIVTWNLETG--QRIHEVAQAHIGDVVSISLSPD- 1835 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~---LlSgS~DGtI~IWDl~tg--~~i~~il~~h~~~ItsLafSPd- 1835 (2004)
.-.++ ..........|...+.+++|.+..+ |++++.||.|.+.+.+.. ....++...|...|++++|.|.
T Consensus 86 ke~~g----~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 86 KEENG----RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred ecCCC----chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcC
Confidence 98765 4455566778999999999987664 889999999999988754 3444567789999999999984
Q ss_pred --C-----------CEEEEEECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCCC----CEEEEEECCCeEEEEEcc
Q psy8748 1836 --G-----------QYFVTGSVDKSCKLWDFREKK--CVQTFFGHEADVNSVCFHPSG----LAFATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1836 --g-----------~~LaSGS~DGsIrIWDlrs~k--~I~tl~~h~s~ItsIafSPdg----~~LaSgS~DGtIrIWDLr 1896 (2004)
| +.|++|+.|..|+||+..++. .-.++.+|.+.|+.++|.|.- .++++++.||++.||..+
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 4 579999999999999998753 345588999999999999953 469999999999999876
Q ss_pred CCceeEE-EcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1897 ADQQIAT-YLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1897 tgk~i~t-~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
......+ .........+..+.|+..|++|++++.|+.|.+|.-
T Consensus 242 ~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 242 EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred CccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 3322111 112234567899999999999999999999999974
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-19 Score=208.09 Aligned_cols=233 Identities=20% Similarity=0.355 Sum_probs=194.2
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+.||.+|++|+.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------ 154 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------ 154 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe------
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999742
Q ss_pred ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC--CCEEEEEECCCeEE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD--GQYFVTGSVDKSCK 1849 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd--g~~LaSGS~DGsIr 1849 (2004)
++.+..++ +-... ..+..|.-+|+++...+. ..++++++.|.+++
T Consensus 155 ------------------------lv~a~~~~--------~~~p~-~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k 201 (476)
T KOG0646|consen 155 ------------------------LVSADNDH--------SVKPL-HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK 201 (476)
T ss_pred ------------------------ecccccCC--------Cccce-eeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence 12222222 11122 345678888999888764 45899999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc----------------eeEEEcCCCCCCCe
Q psy8748 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ----------------QIATYLPPNKNSGF 1913 (2004)
Q Consensus 1850 IWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk----------------~i~t~~~~~~~s~I 1913 (2004)
+||+..+..+.++ .....+.+++.+|.+..+++|+.+|.|.+.++.+.. .+..+..+.....|
T Consensus 202 ~wdlS~g~LLlti-~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 202 LWDLSLGVLLLTI-TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI 280 (476)
T ss_pred EEEeccceeeEEE-ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence 9999999888777 456789999999999999999999999999875432 12223322333489
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCC
Q psy8748 1914 TSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNG 1964 (2004)
Q Consensus 1914 tsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg 1964 (2004)
+|++++-||..|++|+.||.|+|||+.+.++++++....++|+.+.+.|-.
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 999999999999999999999999999999999988778999999996643
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=200.47 Aligned_cols=249 Identities=22% Similarity=0.289 Sum_probs=207.3
Q ss_pred CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCC
Q psy8748 1733 RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLET 1812 (2004)
Q Consensus 1733 Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~t 1812 (2004)
....|.++.|+|.++.|+++++||.+++|++... ..+....|..++.+++|.+...+++|+-||.|+.+|+++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-------~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-------SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch-------hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecC
Confidence 3567999999999999999999999999999754 234455688999999999999999999999999999999
Q ss_pred CceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE
Q psy8748 1813 GQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARL 1892 (2004)
Q Consensus 1813 g~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrI 1892 (2004)
+... ....|...|.|+.+.+....+++|+.|++|++||.+.......+.. ...|.++... |+.|++|+.|..|.+
T Consensus 85 ~~~~--~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~i 159 (323)
T KOG1036|consen 85 GNED--QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLI 159 (323)
T ss_pred Ccce--eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEE
Confidence 8764 4568999999999999999999999999999999997655555533 3478877764 668999999999999
Q ss_pred EEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeeEEEccCCC---------CeEEEE
Q psy8748 1893 FDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT----THNGVLSGHEN---------RVTSIS 1959 (2004)
Q Consensus 1893 WDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg----e~l~tL~gHs~---------~VtsLa 1959 (2004)
||+++...........-...+.|+++-|++.=+++++-||+|.+=.+... .....++.|.. +|++++
T Consensus 160 yDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 160 YDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred EEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 99998877665545555677899999998888999999999988766554 44455666643 699999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEEee
Q psy8748 1960 LSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVY 1993 (2004)
Q Consensus 1960 FSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~ 1993 (2004)
|+|-...|+|||.||.|.+||+.+.+.++.+..+
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred eccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 9999889999999999999999988655544443
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=197.36 Aligned_cols=304 Identities=19% Similarity=0.229 Sum_probs=208.7
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccC
Q psy8748 1549 NAPEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMK 1628 (2004)
Q Consensus 1549 ~a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~s 1628 (2004)
++..+|++.|++|+||.||++||| .+.|++||+|++.+ +.+ ...++++.--.+.. -..+.++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat-~~~Dr~Ir~w~~~D--F~~------~eHr~~R~nve~dh---------pT~V~Fa 141 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLAT-ISGDRSIRLWDVRD--FEN------KEHRCIRQNVEYDH---------PTRVVFA 141 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEE-EeCCceEEEEecch--hhh------hhhhHhhccccCCC---------ceEEEEC
Confidence 345569999999999999999999 99999999999977 111 11233322111111 1122345
Q ss_pred CCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCC---CCCcccccccccccccccceeEEEEeCCCC
Q psy8748 1629 PTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMP---DAPKVKLMPKKSLKGHINKVNSVHYSGDSR 1705 (2004)
Q Consensus 1629 pdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~---~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~ 1705 (2004)
||+...++..... ............. ......+.....-+.|.-.|..+-...++.
T Consensus 142 pDc~s~vv~~~~g---------------------~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k 200 (420)
T KOG2096|consen 142 PDCKSVVVSVKRG---------------------NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK 200 (420)
T ss_pred CCcceEEEEEccC---------------------CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce
Confidence 5543222111000 0000000000000 111112222222344777888888888999
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC--CCCcceEEEEEecCcc
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD--STGAAKVIRELLGYEG 1783 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~--~~~~~k~i~sl~gh~~ 1783 (2004)
+|++++.|..|.+|+++ |+.+..+......-+..+.+|+|+++++++..-.|++|.+--.+ ..........+.||..
T Consensus 201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s 279 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS 279 (420)
T ss_pred EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh
Confidence 99999999999999997 99999998877777888999999999999999999999874322 1223344567889999
Q ss_pred ceeeeEEeCC-CcEEEeecCCeEEEEECCCC----ceeEE------eeccccCCeEEEEECCCCCEEEEEECCCeEEEEE
Q psy8748 1784 FLSSCRFIDD-TTLLTGSGDMKIVTWNLETG----QRIHE------VAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852 (2004)
Q Consensus 1784 ~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg----~~i~~------il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWD 1852 (2004)
.|...+|+++ .++++.+.||.+++||.+-. +-... ......+.-..+..+|+|+.|+.+. ...+++|.
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~ 358 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFA 358 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEE
Confidence 9999999965 46999999999999997531 11100 1112233445899999999888765 45799999
Q ss_pred CCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q psy8748 1853 FREKKCVQTFF-GHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1853 lrs~k~I~tl~-~h~s~ItsIafSPdg~~LaSgS~DGtIrIWD 1894 (2004)
.++++....+. .|...|.+++|+++|+++++++ |..++++.
T Consensus 359 se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 359 SEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 99887665553 6889999999999999999997 77888875
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-16 Score=186.34 Aligned_cols=370 Identities=29% Similarity=0.496 Sum_probs=270.1
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccce-eeEeecccccccccccCcccccccc-C
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELR-CLRAWKSIVDNLMSQEPATFRDLMM-K 1628 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr-~lkt~~g~~~~V~s~~~~~f~~ll~-s 1628 (2004)
...|...+.++.|++.+..++. ++.|+.+.+|+... .. ....+.+... ..+..+.. .
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~-~~~d~~~~~~~~~~-------------~~~~~~~~~~~~~-------~~~~~~~~~~ 119 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLS-GSSDGTIKLWDLDN-------------GEKLIKSLEGLHD-------SSVSKLALSS 119 (466)
T ss_pred eeeccceEEEEEECCCCcEEEE-ecCCCcEEEEEcCC-------------CceeEEEEeccCC-------CceeeEEEEC
Confidence 3457888999999999999999 88999999999988 21 2333332111 00000000 1
Q ss_pred CCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcc--cccccccccccccceeEEEEeCCCCE
Q psy8748 1629 PTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKV--KLMPKKSLKGHINKVNSVHYSGDSRH 1706 (2004)
Q Consensus 1629 pdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~l--k~~pi~sL~GHt~~VtsLaFSPDG~~ 1706 (2004)
+++.. . . .........-..... .......+.+|...|.+++|+|++.+
T Consensus 120 ~~~~~-~-------------------~----------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 169 (466)
T COG2319 120 PDGNS-I-------------------L----------LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKL 169 (466)
T ss_pred CCcce-E-------------------E----------eccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCE
Confidence 11100 0 0 000000000000011 13456778899999999999999999
Q ss_pred EEEEeC-CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEE-EEecCcc
Q psy8748 1707 CVSGSL-DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIR-ELLGYEG 1783 (2004)
Q Consensus 1707 LASGS~-DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~-sl~gh~~ 1783 (2004)
+++++. |+.+++|+..++.....+.+|...|.+++|+|++. .+++++.|+.|++|+...+ .... .+.+|..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~------~~~~~~~~~~~~ 243 (466)
T COG2319 170 LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG------KLLRSTLSGHSD 243 (466)
T ss_pred EEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC------cEEeeecCCCCc
Confidence 998886 99999999999999999999999999999999998 5555599999999977632 3333 5666666
Q ss_pred ceeeeEEeCCC-cEEEeecCCeEEEEECCCCce-eEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEE
Q psy8748 1784 FLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQR-IHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQT 1861 (2004)
Q Consensus 1784 ~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~-i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~t 1861 (2004)
.. ...|.+++ .+++++.|+.+++||...... .... ..|...+.++.|+|++..+++++.|+.+.+||.........
T Consensus 244 ~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 321 (466)
T COG2319 244 SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321 (466)
T ss_pred ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence 64 33666554 777899999999999987765 3333 67789999999999888888899999999999988876666
Q ss_pred Ee--cCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEE-EeCCCeEEEE
Q psy8748 1862 FF--GHEADVNSVCFHPSGLAFATG-SEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFC-GSDDNNVHVW 1937 (2004)
Q Consensus 1862 l~--~h~s~ItsIafSPdg~~LaSg-S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaS-GSsDGsIrIW 1937 (2004)
.. .|...+..+.|.+++..++.+ ..|+.+.+|+........... . ...+..+.+.+ ...+.. +..++.+.+|
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 397 (466)
T COG2319 322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE--G-HSNVLSVSFSP-DGRVVSSGSTDGTVRLW 397 (466)
T ss_pred eeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEec--C-CceEEEEEECC-CCCEEEEecCCCceEEE
Confidence 65 777789999993332456555 678999999998877222221 1 12278888888 544444 6889999999
Q ss_pred ECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1938 DLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1938 DL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
+............+...+....+++++..+++++.++.+++|+...
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 398 DLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 9998888877765547899999999999999999999999999988
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-18 Score=207.15 Aligned_cols=266 Identities=17% Similarity=0.262 Sum_probs=222.7
Q ss_pred eCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEe-cCccceeeeEEeCCCcEEEeecCCeEEEEE
Q psy8748 1731 PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELL-GYEGFLSSCRFIDDTTLLTGSGDMKIVTWN 1809 (2004)
Q Consensus 1731 ~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~-gh~~~Vssvafsdd~~LlSgS~DGtI~IWD 1809 (2004)
.-....|.+++|+.+.+.||.+-.+|.|.+|++... .-....+. +....+.+++|.+++++++.+.+|.|..||
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-----w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-----WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWD 96 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCC-----ceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEe
Confidence 335678999999999999999999999999999763 23333444 446689999999999999999999999999
Q ss_pred CCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEE--EEecCCCCeEEEEEeCCCCEEEEEECC
Q psy8748 1810 LETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQ--TFFGHEADVNSVCFHPSGLAFATGSED 1887 (2004)
Q Consensus 1810 l~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~--tl~~h~s~ItsIafSPdg~~LaSgS~D 1887 (2004)
+.+++....+ ....+.|++++.+|.+..+++|++||.+..++...++... .+...++.|.++.|+|++..+++|+.|
T Consensus 97 l~~lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 97 LHTLKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred cccCceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 9999887544 5678899999999999999999999988888887776533 334456899999999999999999999
Q ss_pred CeEEEEEccCCceeEEEc-----C-CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEc
Q psy8748 1888 KTARLFDIRADQQIATYL-----P-PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLS 1961 (2004)
Q Consensus 1888 GtIrIWDLrtgk~i~t~~-----~-~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFS 1961 (2004)
|.|++||..++....... . .....-|.++.|-. ...|++|+..|+|.+||...+..+..+..|.+.|.+++..
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA 254 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEc
Confidence 999999999988766221 1 11223466666664 4579999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeE-EEEEEeecCCCCccccc
Q psy8748 1962 PNGMALVTSSWDQFVKVWQESNTIV-WKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1962 PDg~~LaSgS~DGtIrIWdlstg~l-~k~Ik~~~~h~~~VtsV 2003 (2004)
+++.+++++|.|+.|.-|...+.+. |......+.|...|.++
T Consensus 255 ~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~ 297 (691)
T KOG2048|consen 255 DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSM 297 (691)
T ss_pred CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceee
Confidence 9999999999999999999877644 88888888888887765
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-19 Score=199.40 Aligned_cols=324 Identities=16% Similarity=0.232 Sum_probs=238.3
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCcccccccc--C
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMM--K 1628 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~--s 1628 (2004)
-++|+++|+.|+.......+.+ ++.|.+-+||.+.+ ++|+..+.||...+.+-..-.-..++. +
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gt-ASADhTA~iWs~Es-------------g~CL~~Y~GH~GSVNsikfh~s~~L~lTaS 209 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGT-ASADHTARIWSLES-------------GACLATYTGHTGSVNSIKFHNSGLLLLTAS 209 (481)
T ss_pred hcccccceeeehhhcCCcceee-cccccceeEEeecc-------------ccceeeecccccceeeEEeccccceEEEcc
Confidence 3569999999999998889999 99999999999999 999999999988776522222222222 2
Q ss_pred CCCcchhhhhHhHHHHHHHHHHHH---HHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCC
Q psy8748 1629 PTSSINIYLKLQTAELKKELTQLI---DKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSR 1705 (2004)
Q Consensus 1629 pdgSidi~i~~~~~ql~k~i~ql~---s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~ 1705 (2004)
.|++..+ |......+..+-. ....+......+..............+---.|+..|.||.+.|.+..|-..|+
T Consensus 210 GD~taHI----W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 210 GDETAHI----WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ 285 (481)
T ss_pred CCcchHH----HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc
Confidence 2333222 2111000110000 00000000000000000000001111111236788999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccce
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL 1785 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~V 1785 (2004)
.+++++.|.+-.+||+++|..+..+.+|....+.++-+|..+++++.+.|.+.++||++. ....+..+.||...+
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-----aI~sV~VFQGHtdtV 360 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-----AIQSVAVFQGHTDTV 360 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh-----hcceeeeecccccce
Confidence 999999999999999999999999999999999999999999999999999999999974 456678899999999
Q ss_pred eeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEE----EE
Q psy8748 1786 SSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCV----QT 1861 (2004)
Q Consensus 1786 ssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I----~t 1861 (2004)
+++.|..+..+++|++|.+|++||++........+ ....++..++++..+..++.--.+..|++||++....- ..
T Consensus 361 TS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATI-RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrts 439 (481)
T KOG0300|consen 361 TSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATI-RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTS 439 (481)
T ss_pred eEEEEecCCceeecCCCceEEEeeeccccCcceee-ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccc
Confidence 99999999999999999999999998766443222 34567889999988888988888899999999755432 23
Q ss_pred EecCCCCeEEEEEeCCCC--EEEEEECCCeEEEEEccCC
Q psy8748 1862 FFGHEADVNSVCFHPSGL--AFATGSEDKTARLFDIRAD 1898 (2004)
Q Consensus 1862 l~~h~s~ItsIafSPdg~--~LaSgS~DGtIrIWDLrtg 1898 (2004)
-.+|..-|.|++|..+.. -+++++.|..+.-|.+...
T Consensus 440 RqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 440 RQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 358889999999986543 4788889999999998643
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=190.99 Aligned_cols=285 Identities=17% Similarity=0.290 Sum_probs=214.8
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC----ceEEEeeCCCCceEEEEEec--CCCEEEEeecCCeEEEEE
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG----NKTQVIPLRSAWVMSVAFAQ--SGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg----k~l~ti~~Ht~~ItsLafSP--dg~~LaSGS~DGtIrVWD 1762 (2004)
.+|.+-|+|+.|.+.|+.+|+|+.|++|+|||..+. .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 579999999999999999999999999999996543 34556788999999999965 489999999999999998
Q ss_pred cCCCCCC---CcceEEEEEecCccceeeeEEeCCC---cEEEeecCCeEEEEECCCCceeE------Ee------ecccc
Q psy8748 1763 LNNRDST---GAAKVIRELLGYEGFLSSCRFIDDT---TLLTGSGDMKIVTWNLETGQRIH------EV------AQAHI 1824 (2004)
Q Consensus 1763 l~t~~~~---~~~k~i~sl~gh~~~Vssvafsdd~---~LlSgS~DGtI~IWDl~tg~~i~------~i------l~~h~ 1824 (2004)
-...... .......++......+..+.|.+.. .+++++.||.++||+.-..-.+. .+ ...+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 6432211 2344556777888899999998654 48999999999999865432211 11 12355
Q ss_pred CCeEEEEECC---CCCEEEEEECC-----CeEEEEECCCC----eEEEEEecCCCCeEEEEEeCCC----CEEEEEECCC
Q psy8748 1825 GDVVSISLSP---DGQYFVTGSVD-----KSCKLWDFREK----KCVQTFFGHEADVNSVCFHPSG----LAFATGSEDK 1888 (2004)
Q Consensus 1825 ~~ItsLafSP---dg~~LaSGS~D-----GsIrIWDlrs~----k~I~tl~~h~s~ItsIafSPdg----~~LaSgS~DG 1888 (2004)
....|+.|+| ...+|++|+.+ +.++||....+ ..+.++.+|..+|+.++|.|+- ..+++++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 6788999997 34678888866 47888876543 3466778999999999999952 4589999999
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEE
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALV 1968 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~La 1968 (2004)
|+||.++...... .. .. + ..|+ .-+. -.-+.+..+.+|.+.|..+.|+-.|..|+
T Consensus 250 -v~I~~v~~~~s~i-~~-ee----~----~~~~--------~~~~------l~v~~vs~~~~H~~~VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 250 -VRIFKVKVARSAI-EE-EE----V----LAPD--------LMTD------LPVEKVSELDDHNGEVWRVRWNMTGTILS 304 (361)
T ss_pred -EEEEEEeeccchh-hh-hc----c----cCCC--------Cccc------cceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence 9999987432211 10 00 0 0111 0011 12244566788999999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEEeecCCCC
Q psy8748 1969 TSSWDQFVKVWQESNTIVWKVLKVYNLEKK 1998 (2004)
Q Consensus 1969 SgS~DGtIrIWdlstg~l~k~Ik~~~~h~~ 1998 (2004)
+.|.||.||+|+..-...|+++..+...+.
T Consensus 305 StGdDG~VRLWkany~n~~kC~sv~~~e~~ 334 (361)
T KOG2445|consen 305 STGDDGCVRLWKANYNNLWKCTSVLKAEGS 334 (361)
T ss_pred ecCCCceeeehhhhhhhhheeeeEEeccCC
Confidence 999999999999988778888888876654
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-19 Score=219.00 Aligned_cols=286 Identities=21% Similarity=0.309 Sum_probs=221.8
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCC----ceEEEeeCC---CCceEEEEEec-CCCEEEEeecCCeEEEEEcC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG----NKTQVIPLR---SAWVMSVAFAQ-SGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg----k~l~ti~~H---t~~ItsLafSP-dg~~LaSGS~DGtIrVWDl~ 1764 (2004)
...++|...++-..++.+|. ..++|+.+... ++...+... ...+..+.|.. +.++|++++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 45667777788888888876 36777765432 222222211 12356678875 57899999999999999997
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEe--CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC-CCCEEEE
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP-DGQYFVT 1841 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP-dg~~LaS 1841 (2004)
.. ...+.+..+..|...+.++.|+ ..+.+++|+.||.|++||++..+..... .+....|..++|+| .+..|++
T Consensus 119 k~---~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~~F~s 194 (839)
T KOG0269|consen 119 KS---IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGNKFAS 194 (839)
T ss_pred cc---ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-cccchhhhceeeccCCCceEEE
Confidence 53 1234455677899999999998 4567999999999999999988776444 45777899999999 6789999
Q ss_pred EECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC
Q psy8748 1842 GSVDKSCKLWDFREK-KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1842 GS~DGsIrIWDlrs~-k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP 1920 (2004)
+.+.|.+..||++.. ++...+.+|.++|.|+.|+|++.+|++||.|+.|+|||+.+.+...... -....++.++.|-|
T Consensus 195 ~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t-InTiapv~rVkWRP 273 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT-INTIAPVGRVKWRP 273 (839)
T ss_pred ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE-Eeecceeeeeeecc
Confidence 999999999999965 4567788999999999999999999999999999999998655433222 13346799999999
Q ss_pred CCCE-EEEEe--CCCeEEEEECCC-CeeeEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q psy8748 1921 SGRY-IFCGS--DDNNVHVWDLLK-TTHNGVLSGHENRVTSISLSP-NGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1921 dG~~-LaSGS--sDGsIrIWDL~t-ge~l~tL~gHs~~VtsLaFSP-Dg~~LaSgS~DGtIrIWdlstg 1984 (2004)
...+ |++++ .|-.|+|||++. .-+..++..|...++.++|.. |...+.+++.||+|..-.++++
T Consensus 274 ~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 274 ARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred CccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 7654 55544 377899999965 456678889999999999965 6678999999999877666554
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.2e-19 Score=207.51 Aligned_cols=249 Identities=20% Similarity=0.379 Sum_probs=205.6
Q ss_pred CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEEC
Q psy8748 1732 LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNL 1810 (2004)
Q Consensus 1732 ~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl 1810 (2004)
.|..-|.+++++...+++++|+. |.|+|||+........... .........+.+|... ++..+++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~Pvsq-Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQ-LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccc-ccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 47888899999988999999985 5699999976532222221 1222345667777766 5556999999999999999
Q ss_pred CCCceeEEe-eccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCe
Q psy8748 1811 ETGQRIHEV-AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKT 1889 (2004)
Q Consensus 1811 ~tg~~i~~i-l~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGt 1889 (2004)
.......+. +........+++.+||.+..+++..||.|.|||+.+...++.+.+|.+.+.||.++++|..|.+|+-|.+
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 876543222 2233345678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEE
Q psy8748 1890 ARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVT 1969 (2004)
Q Consensus 1890 IrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaS 1969 (2004)
|+.||+++++.+... .....|.++..+|++.++++|..++.+.|.... +.....+.-|..-|.++.|.+-|+++++
T Consensus 575 vRcWDlregrqlqqh---dF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQH---DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVS 650 (705)
T ss_pred eeehhhhhhhhhhhh---hhhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeee
Confidence 999999998887665 445679999999999999999999999999864 4445566779999999999999999999
Q ss_pred EECCCeEEEEECCCCeE
Q psy8748 1970 SSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1970 gS~DGtIrIWdlstg~l 1986 (2004)
.|.|+.+..|...-|..
T Consensus 651 tGkDnlLnawrtPyGas 667 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGAS 667 (705)
T ss_pred cCchhhhhhccCccccc
Confidence 99999999999988753
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-18 Score=200.19 Aligned_cols=299 Identities=19% Similarity=0.250 Sum_probs=225.3
Q ss_pred cccccccccccccceeEEEEeCCCC--EEEEEeCCCeEEEEECCC----CceEEEeeCCCCceEEEEEecC-CCEEEEee
Q psy8748 1681 KLMPKKSLKGHINKVNSVHYSGDSR--HCVSGSLDGKLIIWDTWT----GNKTQVIPLRSAWVMSVAFAQS-GNFVACGG 1753 (2004)
Q Consensus 1681 k~~pi~sL~GHt~~VtsLaFSPDG~--~LASGS~DGtIrVWDl~T----gk~l~ti~~Ht~~ItsLafSPd-g~~LaSGS 1753 (2004)
......+.+-|.++|++++|+|... .+|+|...|+|-+||+.+ ...+..+..|.++|.++.|+|. ...+++.+
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 3445667778999999999999554 788898999999999952 2345667889999999999994 56899999
Q ss_pred cCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEE
Q psy8748 1754 MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1754 ~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf 1832 (2004)
.||+|+.-|+++.. ...+.........+..+.++. +..++.++.=|...+||.+++........-|...|.++++
T Consensus 255 yDGtiR~~D~~~~i----~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNI----SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred cCceeeeeeecchh----hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 99999999998652 222233333444566666663 4457777777899999999887755556678889999999
Q ss_pred CCCC-CEEEEEECCCeEEEEECCCCe----EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEcc----CCceeEE
Q psy8748 1833 SPDG-QYFVTGSVDKSCKLWDFREKK----CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR----ADQQIAT 1903 (2004)
Q Consensus 1833 SPdg-~~LaSGS~DGsIrIWDlrs~k----~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLr----tgk~i~t 1903 (2004)
+|.. .++++++.|++.+|||++.-. +......|...|.+..|+|.+-.+++.+.|..|+|||.. ......+
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 9954 578999999999999998532 233445899999999999988789999999999999983 2333333
Q ss_pred EcCCCCC-C--CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCC-CeEEE-EEcCCCCEEEEE-ECCCeEE
Q psy8748 1904 YLPPNKN-S--GFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHEN-RVTSI-SLSPNGMALVTS-SWDQFVK 1977 (2004)
Q Consensus 1904 ~~~~~~~-s--~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~-~VtsL-aFSPDg~~LaSg-S~DGtIr 1977 (2004)
+...... . ......|.|+..+|++|-.-..|-|||-..++.+..+..... .|.++ .|+|-+..+++| +..|.|+
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEE
Confidence 3211111 1 233568999999999999999999999988887777644333 45554 799988855554 5678899
Q ss_pred EEECCC
Q psy8748 1978 VWQESN 1983 (2004)
Q Consensus 1978 IWdlst 1983 (2004)
||.-++
T Consensus 491 vft~k~ 496 (498)
T KOG4328|consen 491 VFTNKK 496 (498)
T ss_pred EEecCC
Confidence 887654
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-17 Score=188.14 Aligned_cols=254 Identities=17% Similarity=0.244 Sum_probs=192.9
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
...|++-|++|.|.+-|+++|+ |+.|++++|||... +. .
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAt-CSsDq~vkI~d~~~--------------------~s----------~---------- 47 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMAT-CSSDQTVKIWDSTS--------------------DS----------G---------- 47 (361)
T ss_pred ccCCcceeeeeeecccCceeee-ccCCCcEEEEeccC--------------------CC----------C----------
Confidence 3468889999999999999999 99999999999755 00 0
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC--CCCEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG--DSRHCV 1708 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP--DG~~LA 1708 (2004)
.|.+....+.|.+.|..+.|.+ -|+.+|
T Consensus 48 --------------------------------------------------~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA 77 (361)
T KOG2445|consen 48 --------------------------------------------------TWSCTSSWRAHDGSIWRVVWAHPEFGQVVA 77 (361)
T ss_pred --------------------------------------------------ceEEeeeEEecCCcEEEEEecCccccceEE
Confidence 1122344567999999999974 689999
Q ss_pred EEeCCCeEEEEECC-----C-C---ceEEEeeCCCCceEEEEEecC--CCEEEEeecCCeEEEEEcCCCCCCCcceEEEE
Q psy8748 1709 SGSLDGKLIIWDTW-----T-G---NKTQVIPLRSAWVMSVAFAQS--GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRE 1777 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~-----T-g---k~l~ti~~Ht~~ItsLafSPd--g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~s 1777 (2004)
+++.|+++.||.-. . | ....++....+.|++++|.|. |-.+++++.||.++||+...............
T Consensus 78 ~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 78 TCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred EEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence 99999999999641 1 1 233455667788999999984 77999999999999999876433333333332
Q ss_pred Ee-------cCccceeeeEEeCCC----cEEEeecC-----CeEEEEECCCCc-eeEE--eeccccCCeEEEEECCC---
Q psy8748 1778 LL-------GYEGFLSSCRFIDDT----TLLTGSGD-----MKIVTWNLETGQ-RIHE--VAQAHIGDVVSISLSPD--- 1835 (2004)
Q Consensus 1778 l~-------gh~~~Vssvafsdd~----~LlSgS~D-----GtI~IWDl~tg~-~i~~--il~~h~~~ItsLafSPd--- 1835 (2004)
+. .+.....|+.|.++. .+++|+.+ +.++||....+. .... .+.+|..+|++++|.|+
T Consensus 158 i~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 158 IQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred hhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC
Confidence 22 355667788888543 36666555 488898876554 2222 24589999999999995
Q ss_pred -CCEEEEEECCCeEEEEECCCC--------------------eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q psy8748 1836 -GQYFVTGSVDKSCKLWDFREK--------------------KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1836 -g~~LaSGS~DGsIrIWDlrs~--------------------k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWD 1894 (2004)
-..+++++.|| |+||.++.. +.+..+..|++.|..+.|+-.|..|.+.|.||.|++|.
T Consensus 238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 238 SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 24799999999 999998731 23455678999999999999999999999999999997
Q ss_pred cc
Q psy8748 1895 IR 1896 (2004)
Q Consensus 1895 Lr 1896 (2004)
..
T Consensus 317 an 318 (361)
T KOG2445|consen 317 AN 318 (361)
T ss_pred hh
Confidence 54
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-18 Score=188.74 Aligned_cols=258 Identities=22% Similarity=0.327 Sum_probs=211.1
Q ss_pred eCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC---CCcEEEeecCCeEEE
Q psy8748 1731 PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID---DTTLLTGSGDMKIVT 1807 (2004)
Q Consensus 1731 ~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd---d~~LlSgS~DGtI~I 1807 (2004)
..|.+.|.++...--|+.|++++.|+.|+|+..++.. ....+.++.+|.+++..+.|.. ++.|++++.||.|.+
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~---~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG---QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC---CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 4688888888888889999999999999999998753 3577889999999999999984 567999999999999
Q ss_pred EECCCCceeEE-eeccccCCeEEEEECCC--CCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeEEEEEeCC---C
Q psy8748 1808 WNLETGQRIHE-VAQAHIGDVVSISLSPD--GQYFVTGSVDKSCKLWDFREK---KCVQTFFGHEADVNSVCFHPS---G 1878 (2004)
Q Consensus 1808 WDl~tg~~i~~-il~~h~~~ItsLafSPd--g~~LaSGS~DGsIrIWDlrs~---k~I~tl~~h~s~ItsIafSPd---g 1878 (2004)
|.-..++-... ....|...|++++|.|. |-.|++++.||.|.|.+.+.. ...+....|.-.|++++|.|. |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99988853321 24578999999999995 558999999999999988754 223345689999999999985 4
Q ss_pred -----------CEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEECCCC-
Q psy8748 1879 -----------LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG----RYIFCGSDDNNVHVWDLLKT- 1942 (2004)
Q Consensus 1879 -----------~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG----~~LaSGSsDGsIrIWDL~tg- 1942 (2004)
+.|++|+.|..|+||+..++.-........|...++.++|.|.- .+|++++.||++.||.....
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 56999999999999999887544444456788999999999953 58999999999999986522
Q ss_pred -e-eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1943 -T-HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1943 -e-~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
. ....+......+..+.|+..|+.|+.++.|+.|.+|.-+....|+.+.
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVG 295 (299)
T ss_pred CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEcc
Confidence 1 122234456789999999999999999999999999988776777654
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=201.58 Aligned_cols=116 Identities=20% Similarity=0.353 Sum_probs=98.6
Q ss_pred eEEEEEeC-CCCEEEEEECCCeEEEEEccCCceeEEE-----cCCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q psy8748 1869 VNSVCFHP-SGLAFATGSEDKTARLFDIRADQQIATY-----LPPNKNSGFTSCAVSS-SGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1869 ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~i~t~-----~~~~~~s~ItsLafSP-dG~~LaSGSsDGsIrIWDL~t 1941 (2004)
|+.+.|.| |...+++++.||.|++|.+..+...... ....|...|+++.|+| -.+.|++++.|.+|++||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 55677777 5677999999999999998754332111 1234667899999999 567899999999999999999
Q ss_pred CeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1942 TTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1942 ge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
++....+.+|.+.|.+++|+|+|+.+++.+.||+|++|+...+
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 9999999999999999999999999999999999999998765
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-19 Score=218.27 Aligned_cols=255 Identities=25% Similarity=0.426 Sum_probs=221.5
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
.+++.+..+-.+++||.+. +-.|...+.++..-..++.+++|+.|..+-+|.+... ..+..+.+|...
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp------~~i~S~~~hesp 72 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP------NAITSLTGHESP 72 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCC------chhheeeccCCc
Confidence 3445555566788888533 3457777888877667889999999999999998654 333458899999
Q ss_pred eeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q psy8748 1785 LSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863 (2004)
Q Consensus 1785 Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~ 1863 (2004)
|.++.|.... .+++|+.+|+|++||++.++.+. .+.+|...+.++.|+|-+.+++.|+.|+.+++||.+...+...+.
T Consensus 73 IeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr-tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 73 IESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR-TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred ceeeecCcchhhhcccccCCceeeeehhhhhhhh-hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec
Confidence 9999999655 57788899999999999988774 457899999999999999999999999999999999888999999
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q psy8748 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1864 ~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge 1943 (2004)
+|...+.++.|+|+|.+++.|+.|..++|||...|+....| ..|.+.+..+.|+|..-.++.|+.|+++++||+++.+
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef--~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF--KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeeccccccccccc--ccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 99999999999999999999999999999999999999888 4566788999999999999999999999999999999
Q ss_pred eeEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q psy8748 1944 HNGVLSGHENRVTSISLSPNGMALVTSSWDQ 1974 (2004)
Q Consensus 1944 ~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG 1974 (2004)
.+.........|.+.+|+++++.+++|..+.
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EeeccCCccCCceeeeecCCceeeecCchhh
Confidence 9988888889999999999999888886553
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=186.94 Aligned_cols=281 Identities=15% Similarity=0.231 Sum_probs=207.6
Q ss_pred eEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcchhhh
Q psy8748 1558 RNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSINIYL 1637 (2004)
Q Consensus 1558 VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSidi~i 1637 (2004)
-+|+.||+.|.+||+ |+.||.|.|||..++ +
T Consensus 26 a~~~~Fs~~G~~lAv-Gc~nG~vvI~D~~T~-------------~----------------------------------- 56 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAV-GCANGRVVIYDFDTF-------------R----------------------------------- 56 (405)
T ss_pred cceEEeccCcceeee-eccCCcEEEEEcccc-------------c-----------------------------------
Confidence 789999999999999 999999999999881 0
Q ss_pred hHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCCCeEE
Q psy8748 1638 KLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLI 1717 (2004)
Q Consensus 1638 ~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIr 1717 (2004)
+-+.|.+|..+|++++||+||+.|+|++.|..|.
T Consensus 57 ----------------------------------------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~ 90 (405)
T KOG1273|consen 57 ----------------------------------------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIK 90 (405)
T ss_pred ----------------------------------------------hhhhhhccccceeEEEecCCCCEeeeecCCceeE
Confidence 1234667999999999999999999999999999
Q ss_pred EEECCCCceEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEE-EecCcc-ceeeeEEe-CC
Q psy8748 1718 IWDTWTGNKTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRE-LLGYEG-FLSSCRFI-DD 1793 (2004)
Q Consensus 1718 VWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~s-l~gh~~-~Vssvafs-dd 1793 (2004)
+||+..|..++.+. ..++|..+.|+|... ..++.-.+..-.+-++..+. ...... -.+... ...+..|. .+
T Consensus 91 lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~----h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 91 LWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK----HSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred EEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc----eeeccCCCccccccccccccccCCC
Confidence 99999999888887 567899999999543 44444444445555554321 011000 001111 11122333 56
Q ss_pred CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCe-------E--EEEEe-
Q psy8748 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKK-------C--VQTFF- 1863 (2004)
Q Consensus 1794 ~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k-------~--I~tl~- 1863 (2004)
.++++|+..|.+.++|..+-+++..........|..+.++..|++|+.-+.|+.|+.|+++.-. . .+.+.
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence 7899999999999999999988766544445779999999999999999999999999986311 1 01111
Q ss_pred -cCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1864 -GHEADVNSVCFHPSGLAFATGSE-DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1864 -~h~s~ItsIafSPdg~~LaSgS~-DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
-....-.+++|+.+|.|++.|+. -..++||....|..++.+.. ..+.....+.|+|-...+++- ..|.+++|...
T Consensus 246 vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG-~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 246 VVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG-TKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred HHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC-Cchhheeecccccceeeeeec-cCCceEEEEee
Confidence 01223457899999999888774 34699999999988877732 223567789999988877776 78999999863
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=202.15 Aligned_cols=283 Identities=19% Similarity=0.275 Sum_probs=210.3
Q ss_pred EEEeC---CCCEEEEEeCCCeEEEEECCCCceE------EEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCC
Q psy8748 1698 VHYSG---DSRHCVSGSLDGKLIIWDTWTGNKT------QVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS 1768 (2004)
Q Consensus 1698 LaFSP---DG~~LASGS~DGtIrVWDl~Tgk~l------~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~ 1768 (2004)
..|++ ....|+.+..||.|.++|....... .....|...|.++.|.|....|++++.|.++++||+.....
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55553 3457899999999999997654332 44567999999999999777999999999999999986532
Q ss_pred CCcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCcee------------------------E--Eee
Q psy8748 1769 TGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRI------------------------H--EVA 1820 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i------------------------~--~il 1820 (2004)
.-...+.+|.+.+.+++|.+. ..|++|+.||.|.+||++-...- . ...
T Consensus 135 ----~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 135 ----VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred ----ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 222358899999999999854 46999999999999998643200 0 001
Q ss_pred ccccCCeEE---EEECCCCCEEEEEEC-CCeEEEEECCCCeEEEE--------EecC---CCCeEEEEEeCCCCEEEEEE
Q psy8748 1821 QAHIGDVVS---ISLSPDGQYFVTGSV-DKSCKLWDFREKKCVQT--------FFGH---EADVNSVCFHPSGLAFATGS 1885 (2004)
Q Consensus 1821 ~~h~~~Its---LafSPdg~~LaSGS~-DGsIrIWDlrs~k~I~t--------l~~h---~s~ItsIafSPdg~~LaSgS 1885 (2004)
..+...|.+ +.+..|...|++++. |+.|++||++....... +..| ...+.++.....|.++++.+
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 223344444 555668888888887 99999999986543222 2223 33577888888899999988
Q ss_pred CCCeEEEEEccCCceeEEEcCCCC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEEEccCCCCeEEEEEcC
Q psy8748 1886 EDKTARLFDIRADQQIATYLPPNK--NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTH-NGVLSGHENRVTSISLSP 1962 (2004)
Q Consensus 1886 ~DGtIrIWDLrtgk~i~t~~~~~~--~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~-l~tL~gHs~~VtsLaFSP 1962 (2004)
.|+.|++||+.+...-......++ ..-...-..+|++.++++|+.|+..++|.+.+.+. ...+.+|...|++++|.|
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 999999999986544332222221 12233446789999999999999999999987554 456689999999999987
Q ss_pred C-CCEEEEEECCCeEEEEECCCC
Q psy8748 1963 N-GMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1963 D-g~~LaSgS~DGtIrIWdlstg 1984 (2004)
. -.-+++|++|..+++|++..+
T Consensus 371 S~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 371 SATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ccCCCceeeccCcceEEEeccCc
Confidence 3 234788899999999999765
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-18 Score=210.26 Aligned_cols=263 Identities=18% Similarity=0.270 Sum_probs=198.5
Q ss_pred ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEE-EEEecCccceeeeEEe--CCCcEEEeecCCeEEEEECCC
Q psy8748 1736 WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI-RELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLET 1812 (2004)
Q Consensus 1736 ~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i-~sl~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~t 1812 (2004)
...+|...++-..++.++.. .+++|.++........... +........+..+.|. .++.+++++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 35566677777777777754 5788887654322211111 1111111223345555 456799999999999999987
Q ss_pred --CceeEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEEEECCC
Q psy8748 1813 --GQRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHP-SGLAFATGSEDK 1888 (2004)
Q Consensus 1813 --g~~i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DG 1888 (2004)
.+.....+..|...+.++.|++ ..++|++|+.||.|++||++..+...++.+....|+.+.|+| .+.+|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 2233345789999999999998 567899999999999999999999999999999999999999 678899999999
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc-CCCCeEEEEEcCCCCE-
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG-HENRVTSISLSPNGMA- 1966 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g-Hs~~VtsLaFSPDg~~- 1966 (2004)
.+++||++..... .+....|.+.|.|+.|+|++.+||+|+.|+.|+|||+.+.+......- ...+|.++.|-|...+
T Consensus 200 ~lqlWDlRqp~r~-~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~h 278 (839)
T KOG0269|consen 200 YLQLWDLRQPDRC-EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYH 278 (839)
T ss_pred eEEEeeccCchhH-HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccch
Confidence 9999999865442 223357889999999999999999999999999999976554333222 3568999999997665
Q ss_pred EEEEE--CCCeEEEEECCCCeEEEEEEeecCCCCcccc
Q psy8748 1967 LVTSS--WDQFVKVWQESNTIVWKVLKVYNLEKKTIFC 2002 (2004)
Q Consensus 1967 LaSgS--~DGtIrIWdlstg~l~k~Ik~~~~h~~~Vts 2002 (2004)
|++++ .|-.|+|||+... +-...++..|...++.
T Consensus 279 LAtcsmv~dtsV~VWDvrRP--YIP~~t~~eH~~~vt~ 314 (839)
T KOG0269|consen 279 LATCSMVVDTSVHVWDVRRP--YIPYATFLEHTDSVTG 314 (839)
T ss_pred hhhhhccccceEEEEeeccc--cccceeeeccCccccc
Confidence 66664 4889999999875 4566777777776654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-15 Score=176.55 Aligned_cols=290 Identities=33% Similarity=0.559 Sum_probs=236.1
Q ss_pred cccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc-eEEEeeCCC-CceEEEEE-ecCCC-EEEEeec-CCeEEEE
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN-KTQVIPLRS-AWVMSVAF-AQSGN-FVACGGM-DNMCTVY 1761 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk-~l~ti~~Ht-~~ItsLaf-SPdg~-~LaSGS~-DGtIrVW 1761 (2004)
.+.+|...|.++.|.+.+..++.++.|+.+.+|+...+. ....+..+. ..+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998887 666666644 37777777 77777 5555444 8999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeec-CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC-E
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSG-DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ-Y 1838 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~-DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~-~ 1838 (2004)
+... ..........|...+..+.|.++. .+++++. ++.+++|+...+.... ...+|...+.+++|+|++. .
T Consensus 140 ~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 140 DLST-----PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS-TLAGHTDPVSSLAFSPDGGLL 213 (466)
T ss_pred EecC-----CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE-eeccCCCceEEEEEcCCcceE
Confidence 9974 246677888899999999999777 4666664 9999999999866653 3456899999999999998 5
Q ss_pred EEEEECCCeEEEEECCCCeEEE-EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce-eEEEcCCCCCCCeEEE
Q psy8748 1839 FVTGSVDKSCKLWDFREKKCVQ-TFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ-IATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlrs~k~I~-tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~-i~t~~~~~~~s~ItsL 1916 (2004)
+++++.|+.|++||...+.... .+.+|.... ...|++++..+++++.|+.+++|+.+.... .... ..+...+.++
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~ 290 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSV 290 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccEEEE
Confidence 5555899999999998787777 677887775 448999998899999999999999987665 4443 4556789999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc--cCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCe
Q psy8748 1917 AVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS--GHENRVTSISLSPNGMALVTS-SWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~--gHs~~VtsLaFSPDg~~LaSg-S~DGtIrIWdlstg~ 1985 (2004)
.|+|++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..|+.+.+|+.....
T Consensus 291 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 999998888889999999999998887777665 788889999994333566666 688999999998875
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-18 Score=214.18 Aligned_cols=240 Identities=27% Similarity=0.458 Sum_probs=215.0
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
..+.+..|...|.++..-..++.+++||.|..+-+|.+.....+..+.+|..+|.++.|+++...|++|+.+|+|++||+
T Consensus 20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 34567789999999998778899999999999999999888888889999999999999999999999999999999999
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
+. .+.++++.+|...+..+.|++-. +++.|+.|+.+++||++...+.+. +.+|...+.++.|+|+|++++.|
T Consensus 100 ee------Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~-~~s~~~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 100 EE------AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT-YKSHTRVVDVLRLSPDGRWVASG 172 (825)
T ss_pred hh------hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee-ecCCcceeEEEeecCCCceeecc
Confidence 84 46677899999999999999755 466788999999999998777744 46699999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
+.|..++|||...|+....|..|.+.+..+.|+|..-.++.|+.|+++++||+++...+..... ...+|.+.+|+|+|
T Consensus 173 ~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~--~~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP--ETDGVRSLAFNPDG 250 (825)
T ss_pred CCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC--ccCCceeeeecCCc
Confidence 9999999999999999999999999999999999999999999999999999998877766643 35789999999999
Q ss_pred CEEEEEeCCC
Q psy8748 1923 RYIFCGSDDN 1932 (2004)
Q Consensus 1923 ~~LaSGSsDG 1932 (2004)
..+++|....
T Consensus 251 ~~~~~G~q~s 260 (825)
T KOG0267|consen 251 KIVLSGEQIS 260 (825)
T ss_pred eeeecCchhh
Confidence 9999987654
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-16 Score=179.83 Aligned_cols=265 Identities=23% Similarity=0.282 Sum_probs=192.2
Q ss_pred eCCCCceEEEEEec-CCCEEEEeecCCeEEEEEcCCCCCCCcce------E---EEEEecCccceeeeEEe--CCCcEEE
Q psy8748 1731 PLRSAWVMSVAFAQ-SGNFVACGGMDNMCTVYDLNNRDSTGAAK------V---IRELLGYEGFLSSCRFI--DDTTLLT 1798 (2004)
Q Consensus 1731 ~~Ht~~ItsLafSP-dg~~LaSGS~DGtIrVWDl~t~~~~~~~k------~---i~sl~gh~~~Vssvafs--dd~~LlS 1798 (2004)
..|.+.|.++...+ .|+++++|+.||.|.+||+++........ + .....+|.-.|..+.|. +.+.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45788999999987 68999999999999999998643211111 1 11234566778888886 6678999
Q ss_pred eecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC---CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEe
Q psy8748 1799 GSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD---GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFH 1875 (2004)
Q Consensus 1799 gS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd---g~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafS 1875 (2004)
++-|.++++||.++-+....+ ...+.|.+-+++|- .-++++|..|-.|++.|+.+|.....+.+|.+.|.++.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 999999999999998876554 45677888888883 4478888889999999999999999999999999999999
Q ss_pred CCCCE-EEEEECCCeEEEEEccCC-ceeEEE------------cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1876 PSGLA-FATGSEDKTARLFDIRAD-QQIATY------------LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1876 Pdg~~-LaSgS~DGtIrIWDLrtg-k~i~t~------------~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
|...+ +++|+.||.|++||++.. .+...+ ....|.+.+..++|..+|.++++.+.|..+++|+..+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 97766 788999999999999754 222222 1344667789999999999999999999999999987
Q ss_pred CeeeEEEc---cCCCC----eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeecCCCCcccc
Q psy8748 1942 TTHNGVLS---GHENR----VTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFC 2002 (2004)
Q Consensus 1942 ge~l~tL~---gHs~~----VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~Vts 2002 (2004)
|+....-. .|... +. +. +-+...++---.|+.+.++++-.+.. ++.++.|.+.|.|
T Consensus 278 G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~---ir~l~~h~k~i~c 340 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSF---VRRLSTHLKRINC 340 (397)
T ss_pred CcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceE---EEeeecccceeeE
Confidence 76432211 11111 11 22 22333444444456677777766643 3334444444443
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-17 Score=197.21 Aligned_cols=291 Identities=19% Similarity=0.238 Sum_probs=205.6
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE--eeCCCCceEEEEEecC-CCEEEEeecCCeEEEEEcC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQV--IPLRSAWVMSVAFAQS-GNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~t--i~~Ht~~ItsLafSPd-g~~LaSGS~DGtIrVWDl~ 1764 (2004)
...|.+.|.++.|-|....|++++.|.++++||+++++.... +.+|.+.|.++||++. ...|++|+.||.|.|||+.
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 456999999999999667899999999999999999988876 8899999999999995 5688999999999999987
Q ss_pred CCCCC--------------C---cc----eEEEEEecC----ccceeeeEEeCCCcEEEeec-CCeEEEEECCCCceeEE
Q psy8748 1765 NRDST--------------G---AA----KVIRELLGY----EGFLSSCRFIDDTTLLTGSG-DMKIVTWNLETGQRIHE 1818 (2004)
Q Consensus 1765 t~~~~--------------~---~~----k~i~sl~gh----~~~Vssvafsdd~~LlSgS~-DGtI~IWDl~tg~~i~~ 1818 (2004)
..... . .. +.+.....+ .+.|+.+.|-++..+++++. |+.|++||++.......
T Consensus 176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r 255 (720)
T KOG0321|consen 176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR 255 (720)
T ss_pred ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence 43210 0 00 001111112 23456677778888998887 99999999987654432
Q ss_pred e-------eccc---cCCeEEEEECCCCCEEEEEECCCeEEEEECCCCe--EEEEEecCCCC--eEEEEEeCCCCEEEEE
Q psy8748 1819 V-------AQAH---IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKK--CVQTFFGHEAD--VNSVCFHPSGLAFATG 1884 (2004)
Q Consensus 1819 i-------l~~h---~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k--~I~tl~~h~s~--ItsIafSPdg~~LaSg 1884 (2004)
. +..| .-.++++..+..|.++++.+.|+.|++|++.... ++..+.++... -..-..+|++.++++|
T Consensus 256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~Sg 335 (720)
T KOG0321|consen 256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSG 335 (720)
T ss_pred cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEecc
Confidence 2 1112 3357888888889999999999999999997543 23333333211 1223468999999999
Q ss_pred ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCee--------------eEEEc
Q psy8748 1885 SEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG-RYIFCGSDDNNVHVWDLLKTTH--------------NGVLS 1949 (2004)
Q Consensus 1885 S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG-~~LaSGSsDGsIrIWDL~tge~--------------l~tL~ 1949 (2004)
+.|+..++|.+.+........ .+|...|++++|.|.. .-++++++|.++++|++.++-. ...++
T Consensus 336 Ssd~~ayiw~vs~~e~~~~~l-~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk 414 (720)
T KOG0321|consen 336 SSDEQAYIWVVSSPEAPPALL-LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFK 414 (720)
T ss_pred CCCcceeeeeecCccCChhhh-hCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhh
Confidence 999999999998766544332 4667789999999832 3466669999999999865422 22345
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1950 GHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1950 gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
+|...+..+.++-.+.+.... .+..++|..
T Consensus 415 ~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ss 444 (720)
T KOG0321|consen 415 GHLPQVLNVNSSLRKTYKDPR--EGMNRISSS 444 (720)
T ss_pred ccccccccccccccccccchh--hhccccccC
Confidence 566666666554433332222 344555543
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=193.21 Aligned_cols=261 Identities=20% Similarity=0.269 Sum_probs=206.4
Q ss_pred ceeEEEEeCCCC-EEEEEeCCCeEEEEECCCCc---eEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC
Q psy8748 1694 KVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGN---KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1694 ~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk---~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~ 1769 (2004)
+|.++.|+.... .+++.+.|..+++|. +.|+ ....-+.....-.|+.......++++||..|.|+|||++.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~---- 110 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA---- 110 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH----
Confidence 488999987654 233445688899996 3333 2222222223445555555568999999999999999973
Q ss_pred CcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC-EEEEEECCCe
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ-YFVTGSVDKS 1847 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~-~LaSGS~DGs 1847 (2004)
..+.+.+.+|...|+++.|. .+.++++++..|.|.+....++.....+..+....|.-+.|++..+ +|.+++.+|.
T Consensus 111 --kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~ 188 (673)
T KOG4378|consen 111 --KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA 188 (673)
T ss_pred --HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCe
Confidence 35667788999999999998 5667999999999999999998877666545556677899999766 5667889999
Q ss_pred EEEEECCCCeEEEEE-ecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEE
Q psy8748 1848 CKLWDFREKKCVQTF-FGHEADVNSVCFHPS-GLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1848 IrIWDlrs~k~I~tl-~~h~s~ItsIafSPd-g~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~L 1925 (2004)
|.+||+....++..+ ..|..+...|+|+|. ..+|++.+.|.+|.+||++..+....+. ...+.+.++|+++|.+|
T Consensus 189 VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~~Plstvaf~~~G~~L 265 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT---YSHPLSTVAFSECGTYL 265 (673)
T ss_pred EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee---ecCCcceeeecCCceEE
Confidence 999999877766554 579999999999994 5678899999999999999776665553 23568899999999999
Q ss_pred EEEeCCCeEEEEECCC-CeeeEEEccCCCCeEEEEEcCCC
Q psy8748 1926 FCGSDDNNVHVWDLLK-TTHNGVLSGHENRVTSISLSPNG 1964 (2004)
Q Consensus 1926 aSGSsDGsIrIWDL~t-ge~l~tL~gHs~~VtsLaFSPDg 1964 (2004)
++|+..|.|..||++. ..++..+.+|...|++++|-+..
T Consensus 266 ~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 266 CAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999999975 55788889999999999997754
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=190.40 Aligned_cols=281 Identities=14% Similarity=0.166 Sum_probs=215.3
Q ss_pred CeEEEEECCCCceEEEeeCCC--CceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRS--AWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht--~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf 1790 (2004)
..+++||+........+..|+ ..+.+++|..... .+++.+.|..+++|.-... ...........+. .-.|+..
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp~~~k~~gd--~~~Cv~~ 87 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEVPRVRKLTGD--NAFCVAC 87 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC--CCccceeeccccc--hHHHHhh
Confidence 479999988765555444332 2489999987654 2334456778889976543 2233333333333 2233333
Q ss_pred e-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecC-CCC
Q psy8748 1791 I-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH-EAD 1868 (2004)
Q Consensus 1791 s-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h-~s~ 1868 (2004)
. ..-++++|+..+.|+|||++ .+.+++..++|...|+++.++....+|++++..|.|.|..+.++.....+... ...
T Consensus 88 ~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs 166 (673)
T KOG4378|consen 88 ASQSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS 166 (673)
T ss_pred hhcceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCe
Confidence 2 23568999999999999999 56666788999999999999999999999999999999999988877777544 345
Q ss_pred eEEEEEeCCCCE-EEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeE
Q psy8748 1869 VNSVCFHPSGLA-FATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS-GRYIFCGSDDNNVHVWDLLKTTHNG 1946 (2004)
Q Consensus 1869 ItsIafSPdg~~-LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPd-G~~LaSGSsDGsIrIWDL~tge~l~ 1946 (2004)
|+-+.|++..++ |.+++.+|.|.+||+........+. ..|..+...++|+|. ..+|++.+.|..|.+||........
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~-~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS-EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCCcccchh-hhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 678999997665 6678899999999998766665553 466778889999994 5677888999999999998776666
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1947 VLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1947 tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
.+. ...+.+.++|.++|.+|+.|+..|.|..||+...+ ..+.+..+|...|+||
T Consensus 246 ~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 246 RLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRV 299 (673)
T ss_pred eee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEE
Confidence 664 46789999999999999999999999999998764 5577777888888886
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-16 Score=190.57 Aligned_cols=273 Identities=17% Similarity=0.260 Sum_probs=220.0
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcce
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k 1773 (2004)
.|+.++|-|||..|+.+. +..+.+||..+|..+.++++|.+.|++++|+.||+.+++|+.|..|.+|+-.-..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG------ 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG------ 86 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc------
Confidence 899999999999877765 4579999999999999999999999999999999999999999999999864311
Q ss_pred EEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1774 VIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1774 ~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
.-...|.+.|.|+.|.+-+..++.+.=...-+|......... ......+.+++|..||.+++.|-.+|+|.+-+-
T Consensus 87 --~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K---~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 87 --ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK---HKSSSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred --eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh---hhhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 123468999999999987776655555667788876554431 123456889999999999999999999999864
Q ss_pred CCCeEEEEE---ecCCCCeEEEEEeCCC-----CEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEE
Q psy8748 1854 REKKCVQTF---FGHEADVNSVCFHPSG-----LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1854 rs~k~I~tl---~~h~s~ItsIafSPdg-----~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~L 1925 (2004)
. ++....+ -+.+++|++++|+|.. ..+++.....++.+|.+. |+.+.+-. .-.-...|+.+.++|.|+
T Consensus 162 ~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r--~L~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 162 N-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR--ALNFDPCCISYFTNGEYI 237 (1081)
T ss_pred C-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc--cCCCCchhheeccCCcEE
Confidence 3 3332233 2467899999999953 467788888888888876 44443221 112335788999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1926 FCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1926 aSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
..|+.|+.+++|- +.|..+.++......|+.++..|++++++.|+.||+|.-|++-.
T Consensus 238 LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 9999999999997 67888888877888999999999999999999999999998754
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-17 Score=214.35 Aligned_cols=288 Identities=18% Similarity=0.293 Sum_probs=223.0
Q ss_pred eEEEEeCCCC-EEEEEe----------CCCeEEEEECC--CCc----eEEEeeCCCCceEEEEEecCCCE----EEEeec
Q psy8748 1696 NSVHYSGDSR-HCVSGS----------LDGKLIIWDTW--TGN----KTQVIPLRSAWVMSVAFAQSGNF----VACGGM 1754 (2004)
Q Consensus 1696 tsLaFSPDG~-~LASGS----------~DGtIrVWDl~--Tgk----~l~ti~~Ht~~ItsLafSPdg~~----LaSGS~ 1754 (2004)
..++|+|++. ++++|. .+.++-+|.+. +.. .+..+. .....+.++|.+.|.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 3678999887 555542 24556666443 322 222222 2345789999987765 888999
Q ss_pred CCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCCCceeEEe-eccccCCeEEEE
Q psy8748 1755 DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQRIHEV-AQAHIGDVVSIS 1831 (2004)
Q Consensus 1755 DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~i-l~~h~~~ItsLa 1831 (2004)
||.|.+|+............+.....|.+.|..+.|+. ++.+++|+.||.|.|||++.-+..... .....+.|.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999999876433345666778889999999999984 457999999999999999875544333 223567899999
Q ss_pred ECCC-CCEEEEEECCCeEEEEECCCCeEEEEEecCCC--CeEEEEEeCCC-CEEEEEECCC---eEEEEEccCCceeEEE
Q psy8748 1832 LSPD-GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA--DVNSVCFHPSG-LAFATGSEDK---TARLFDIRADQQIATY 1904 (2004)
Q Consensus 1832 fSPd-g~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s--~ItsIafSPdg-~~LaSgS~DG---tIrIWDLrtgk~i~t~ 1904 (2004)
|+.. ...|++++.+|.+.|||++..+.+..+..+.. .+..+.|+|++ ..+++++.|. .|.+||+|.-....+.
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 9874 45788899999999999999988877765544 47789999976 3466666654 5999999865544333
Q ss_pred cCCCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECC
Q psy8748 1905 LPPNKNSGFTSCAVSSSG-RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM-ALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1905 ~~~~~~s~ItsLafSPdG-~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~-~LaSgS~DGtIrIWdls 1982 (2004)
. .+|..+|.++.|++.+ +++++++.|++|.+|+..+++.+..+....+.+..+.|+|... .++.++-||.|.||.+.
T Consensus 249 ~-~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 249 L-EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred h-cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 2 5778899999999965 8999999999999999999999999998889999999999665 78888999999999998
Q ss_pred CCe
Q psy8748 1983 NTI 1985 (2004)
Q Consensus 1983 tg~ 1985 (2004)
++.
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 764
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=184.00 Aligned_cols=248 Identities=18% Similarity=0.246 Sum_probs=191.1
Q ss_pred cccccccceeEEEEeCCC--CEEEEEeCCCeEEEEECC----------------CCceEEEeeCCCCceEEEEEecC-CC
Q psy8748 1687 SLKGHINKVNSVHYSGDS--RHCVSGSLDGKLIIWDTW----------------TGNKTQVIPLRSAWVMSVAFAQS-GN 1747 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG--~~LASGS~DGtIrVWDl~----------------Tgk~l~ti~~Ht~~ItsLafSPd-g~ 1747 (2004)
..-+|.+.|+.+.-++-+ .+.++-+..|.|.|||+. ..+.+.++.+|.+.=++++|+|- ..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 445688999998888754 467777889999999974 23556778899999999999994 34
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCCCce-eEEeecccc
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQR-IHEVAQAHI 1824 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~-i~~il~~h~ 1824 (2004)
.+++|..-+.|++|...++. -..-...+.+|...|..+.|++ ++.|++|+.||.|+|||++.+.. .....+.|.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~---W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGS---WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred ccccCccccceEeeeeccCc---eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 58888888999999988753 1222345667999999999985 45699999999999999998832 222347899
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCC---CeEEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccCCce
Q psy8748 1825 GDVVSISLSPDGQYFVTGSVDKSCKLWDFRE---KKCVQTFFGHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRADQQ 1900 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs---~k~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~ 1900 (2004)
+.|.-+.|+....+|++|+.||+++|||+++ ++++..++.|..+|+++.|+| +...|++++.|..|.+||+....-
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 9999999999888999999999999999985 567899999999999999999 456788899999999999853221
Q ss_pred ----------------eEEEcCCCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEE
Q psy8748 1901 ----------------IATYLPPNKNSGFTSCAVSSS-GRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1901 ----------------i~t~~~~~~~s~ItsLafSPd-G~~LaSGSsDGsIrIWD 1938 (2004)
...+..+.....+..+.|++. ..++++.+.|| +.||.
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 001111222345677889885 34677777777 55553
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=179.43 Aligned_cols=289 Identities=16% Similarity=0.238 Sum_probs=208.0
Q ss_pred ccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee-CCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1682 LMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP-LRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1682 ~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~-~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
..|..+|++|.+.|+++.|..+++ |.+|..-|.|++|++.+.+....+. .+...|+.+.--|+ ..+.+-+.|+.+.+
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 346778889999999999988775 8999999999999999998888888 56778888888876 67888999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEe-----CCC----c-EEEeecCC-eEEEEECCCCceeEEe---eccccCC
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-----DDT----T-LLTGSGDM-KIVTWNLETGQRIHEV---AQAHIGD 1826 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-----dd~----~-LlSgS~DG-tI~IWDl~tg~~i~~i---l~~h~~~ 1826 (2004)
|++.... .-.+..+ .+.++.|. .+. . ++.-+... .+.+-|......+... ..+..+.
T Consensus 82 w~ia~s~----~i~i~Si-----~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 82 WTIAYSA----FISIHSI-----VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGS 152 (323)
T ss_pred EEccCcc----eEEEeee-----eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCc
Confidence 9997532 1222221 12222221 111 1 11111110 1122222111111000 1234566
Q ss_pred eEEEEECC-CCC--EEEEEECCCeEEEEECCCCeEE----------EEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEE
Q psy8748 1827 VVSISLSP-DGQ--YFVTGSVDKSCKLWDFREKKCV----------QTFFGHEADVNSVCFHPSGLAFATGSEDKTARLF 1893 (2004)
Q Consensus 1827 ItsLafSP-dg~--~LaSGS~DGsIrIWDlrs~k~I----------~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIW 1893 (2004)
++|..+.. ++. ++++|..+|.+.+||+.++..+ .....|..+|.++.+.+.-..=++|+.+..+..|
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY 232 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence 77777544 333 5678889999999999987433 3334688999999998866666788888889999
Q ss_pred EccCC--ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEE
Q psy8748 1894 DIRAD--QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1894 DLrtg--k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS 1971 (2004)
++... .........-.+.++..+.+-||++.+|+++.||+||||+.++..++..++.|.+.|.+++|+|+...+|+++
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas 312 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS 312 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc
Confidence 88643 2211111112235688899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEC
Q psy8748 1972 WDQFVKVWQE 1981 (2004)
Q Consensus 1972 ~DGtIrIWdl 1981 (2004)
.|++|.+|++
T Consensus 313 kD~rISLWkL 322 (323)
T KOG0322|consen 313 KDARISLWKL 322 (323)
T ss_pred CCceEEeeec
Confidence 9999999986
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.6e-16 Score=176.52 Aligned_cols=275 Identities=20% Similarity=0.233 Sum_probs=209.4
Q ss_pred eeEEEEeCCCCEEEEEeCCCeEEEEECCCC----c--------eEEEee-CCCCceEEEEEe-------cCCCEEEEeec
Q psy8748 1695 VNSVHYSGDSRHCVSGSLDGKLIIWDTWTG----N--------KTQVIP-LRSAWVMSVAFA-------QSGNFVACGGM 1754 (2004)
Q Consensus 1695 VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg----k--------~l~ti~-~Ht~~ItsLafS-------Pdg~~LaSGS~ 1754 (2004)
...+.|+|||..|++-+.|..+.+|++... + ....++ .....|...+|- |+.+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346889999999999999999999987421 0 011111 234568888885 56789999999
Q ss_pred CCeEEEEEcCCCCCCCcceEEEEEecCcc---ceeeeEEeCCCcEEEeecCCeEEEEEC-CCCceeEE---e---ecccc
Q psy8748 1755 DNMCTVYDLNNRDSTGAAKVIRELLGYEG---FLSSCRFIDDTTLLTGSGDMKIVTWNL-ETGQRIHE---V---AQAHI 1824 (2004)
Q Consensus 1755 DGtIrVWDl~t~~~~~~~k~i~sl~gh~~---~Vssvafsdd~~LlSgS~DGtI~IWDl-~tg~~i~~---i---l~~h~ 1824 (2004)
+.-|++||.-+++..... ....|.. ...++.|++++.-+.++....|+++|+ +.|..... . ..+..
T Consensus 132 ~~PIh~wdaftG~lraSy----~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASY----RAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cCceeeeeccccccccch----hhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 999999999876432222 2222322 345788988888777888899999999 44432211 1 12346
Q ss_pred CCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEEccCCce-e
Q psy8748 1825 GDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE-DKTARLFDIRADQQ-I 1901 (2004)
Q Consensus 1825 ~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~-DGtIrIWDLrtgk~-i 1901 (2004)
+-|.|++|+| +.+.+++|+....+-||.-..+.++..+.+|.+.|+.++|.++|+.|++|.. |.+|..||++..+. +
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 7789999999 4559999999999999998889999999999999999999999999999886 67899999986543 2
Q ss_pred EEEcCCCC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEEEccCCCCeEEEEEcCCCCEEEEEECC
Q psy8748 1902 ATYLPPNK-NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK-TTHNGVLSGHENRVTSISLSPNGMALVTSSWD 1973 (2004)
Q Consensus 1902 ~t~~~~~~-~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t-ge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D 1973 (2004)
..+..+.. ...-.-....|+|++|++|+.||.|++||+++ +..+..+..|+..++.++++|--.++++++..
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 22221111 12233456778999999999999999999988 77788888899999999999998888888744
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=195.17 Aligned_cols=306 Identities=19% Similarity=0.294 Sum_probs=219.8
Q ss_pred CCCCcccccccccccccccceeEEEEeCCC-CEEEEEeCCCeEEEEECCCC-------ceEEEeeCCCCceEEEEEecCC
Q psy8748 1675 PDAPKVKLMPKKSLKGHINKVNSVHYSGDS-RHCVSGSLDGKLIIWDTWTG-------NKTQVIPLRSAWVMSVAFAQSG 1746 (2004)
Q Consensus 1675 ~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG-~~LASGS~DGtIrVWDl~Tg-------k~l~ti~~Ht~~ItsLafSPdg 1746 (2004)
+.+++.++..+..|..|...|..++.++.. .+++|||.||+|++||...- +...++......+.++...+.+
T Consensus 1031 ~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1031 PPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence 334566777888999999999999998655 89999999999999997642 2233445467889999999999
Q ss_pred CEEEEeecCCeEEEEEcCCCCCCC-cceEE--EEEecCccceeeeEEe--CCC-cEEEeecCCeEEEEECCCCceeEEe-
Q psy8748 1747 NFVACGGMDNMCTVYDLNNRDSTG-AAKVI--RELLGYEGFLSSCRFI--DDT-TLLTGSGDMKIVTWNLETGQRIHEV- 1819 (2004)
Q Consensus 1747 ~~LaSGS~DGtIrVWDl~t~~~~~-~~k~i--~sl~gh~~~Vssvafs--dd~-~LlSgS~DGtI~IWDl~tg~~i~~i- 1819 (2004)
+.+++++.||.|.+.+++...... ..... ......+..+..-+|. ... .++.++..+.|..||.+........
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 999999999999999998632111 11111 1122222333333343 233 6888999999999999876654333
Q ss_pred eccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCCC---CEEEEEE--CCCeEEEE
Q psy8748 1820 AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHPSG---LAFATGS--EDKTARLF 1893 (2004)
Q Consensus 1820 l~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~-~h~s~ItsIafSPdg---~~LaSgS--~DGtIrIW 1893 (2004)
.....|.|++++.+|.++++++|+..|.+.+||++-+.++..+. ++..+|+.+..+|-. ...++++ ..+.|.+|
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 23345789999999999999999999999999999998887764 455788888887732 3444444 46789999
Q ss_pred EccCCceeEEEcCC-----------------CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-----------
Q psy8748 1894 DIRADQQIATYLPP-----------------NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN----------- 1945 (2004)
Q Consensus 1894 DLrtgk~i~t~~~~-----------------~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l----------- 1945 (2004)
++.+|.+...+... .+.-....+.+...+.++.+|+.|+.|+.||....+..
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~ 1350 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSY 1350 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccc
Confidence 99998776665332 11112334455556778999999999999997321111
Q ss_pred -------------------------------------EEE--------ccCCCCeEEEEEcCC-CCEEEEEECCCeEEEE
Q psy8748 1946 -------------------------------------GVL--------SGHENRVTSISLSPN-GMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1946 -------------------------------------~tL--------~gHs~~VtsLaFSPD-g~~LaSgS~DGtIrIW 1979 (2004)
... ..|.+.|+++++... ..+|++++.||.|+||
T Consensus 1351 ~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1351 STNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred cccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeec
Confidence 000 137778999988653 4689999999999999
Q ss_pred E
Q psy8748 1980 Q 1980 (2004)
Q Consensus 1980 d 1980 (2004)
.
T Consensus 1431 k 1431 (1431)
T KOG1240|consen 1431 K 1431 (1431)
T ss_pred C
Confidence 4
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-16 Score=184.37 Aligned_cols=211 Identities=19% Similarity=0.311 Sum_probs=165.9
Q ss_pred cccccccceeEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecC-CCEEEEeecCCeEEEEEcC
Q psy8748 1687 SLKGHINKVNSVHYSGDS-RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQS-GNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG-~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPd-g~~LaSGS~DGtIrVWDl~ 1764 (2004)
.-.+|++.|.+++|+.+- ..||+||.|.+|++||+.+|++..++..|+..|.++.|+|. ..+|++|+.||+|.+.|.+
T Consensus 238 ~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 238 SASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred ccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 346799999999999754 47899999999999999999999999999999999999995 6789999999999999986
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC-CCEEEEEE
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD-GQYFVTGS 1843 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd-g~~LaSGS 1843 (2004)
.... . =+-| ...+.|-.++|+|. ...+++++
T Consensus 318 ~~~~-------------s----------------------~~~w-------------k~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 318 DPSN-------------S----------------------GKEW-------------KFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred Cccc-------------c----------------------CceE-------------EeccceEEEEecCCCceeEEEec
Confidence 3110 0 0112 12356778888884 45788889
Q ss_pred CCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCC
Q psy8748 1844 VDKSCKLWDFREK-KCVQTFFGHEADVNSVCFHPS-GLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~-k~I~tl~~h~s~ItsIafSPd-g~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPd 1921 (2004)
.||+++-+|+|.. +++.++..|.++|.++++++. ...+++++.|+.|++|++............-.-+...|.++.|+
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~ 429 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPD 429 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCC
Confidence 9999999999975 899999999999999999984 45788999999999999875544332222222234667778886
Q ss_pred C-CEEEEEeCCCeEEEEECCCCeee
Q psy8748 1922 G-RYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1922 G-~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
- -+++.|+..+.++|||+.+...+
T Consensus 430 ~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 430 VAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cceEEEecCccceEEEeecccChhH
Confidence 4 46778888889999999776554
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=182.01 Aligned_cols=279 Identities=20% Similarity=0.233 Sum_probs=214.2
Q ss_pred ECCCCceEEEeeCCCCceEEEEEecCC--CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC--Cc
Q psy8748 1720 DTWTGNKTQVIPLRSAWVMSVAFAQSG--NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD--TT 1795 (2004)
Q Consensus 1720 Dl~Tgk~l~ti~~Ht~~ItsLafSPdg--~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd--~~ 1795 (2004)
|+.+-.....++.+.+.|++++|+|.. +.+++|...|.|-+||+...+ .....+..+..|...|.++.|++. ..
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~--~d~d~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE--KDKDGVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC--CccCceEEeccCCccccceEecCCChhh
Confidence 344445555667788999999999964 588889999999999996332 233455677889999999999954 56
Q ss_pred EEEeecCCeEEEEECCCCceeEEeec--cccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE-EEEEecCCCCeEEE
Q psy8748 1796 LLTGSGDMKIVTWNLETGQRIHEVAQ--AHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC-VQTFFGHEADVNSV 1872 (2004)
Q Consensus 1796 LlSgS~DGtI~IWDl~tg~~i~~il~--~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~-I~tl~~h~s~ItsI 1872 (2004)
+++.+.||+|+.-|++.+..- .++. .....+.++.|+.+...++.|+.=|...+||++.+.. ...+.-|...|.++
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e-~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISE-EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV 328 (498)
T ss_pred eeeeccCceeeeeeecchhhH-HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence 999999999999999876432 1111 2344567788888888888888888999999997765 56667788899999
Q ss_pred EEeCCC-CEEEEEECCCeEEEEEccCCceeE--EEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC----CCCeee
Q psy8748 1873 CFHPSG-LAFATGSEDKTARLFDIRADQQIA--TYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL----LKTTHN 1945 (2004)
Q Consensus 1873 afSPdg-~~LaSgS~DGtIrIWDLrtgk~i~--t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL----~tge~l 1945 (2004)
+++|.. .++++++.|++.+|||++.-.... .+..-.|...|.+..|||+|-.|++.+.|..|+|||. ....+.
T Consensus 329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL 408 (498)
T ss_pred ecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc
Confidence 999954 568999999999999998644333 2444577788999999998888999999999999998 344444
Q ss_pred EEEccCCC------CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeecCCCCcccccC
Q psy8748 1946 GVLSGHEN------RVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCVN 2004 (2004)
Q Consensus 1946 ~tL~gHs~------~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~VtsVN 2004 (2004)
..+. |.. ......|.|+..++++|..-..|-|||-++++.. .+.+.....+|.|+|
T Consensus 409 ~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v--~el~~P~~~tI~~vn 470 (498)
T KOG4328|consen 409 GTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMV--CELHDPESSTIPSVN 470 (498)
T ss_pred ceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEe--eeccCccccccccce
Confidence 4443 221 2455689999999999999999999999998633 344555566777765
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=192.39 Aligned_cols=295 Identities=15% Similarity=0.229 Sum_probs=221.4
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCC---CCceEEEEEec--CCCEEEEeecCCeEEEEE
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLR---SAWVMSVAFAQ--SGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~H---t~~ItsLafSP--dg~~LaSGS~DGtIrVWD 1762 (2004)
+.+....-..+.|+|-...++++...-.|+|||.+.++....|..+ ...|+.+++-. |...+++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 3344446678889999999999987789999999999998887654 46789999865 456899999999999997
Q ss_pred cCCCCCCCcceEEEEEec-------CccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1763 LNNRDSTGAAKVIRELLG-------YEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~g-------h~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
--.... ...+.+....+ ..+.-.-+.|. ..+.++++|+-..|+|||.........+..+....|+++.-+-
T Consensus 1140 ~y~~~~-~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1140 DYADKW-KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred cccccc-CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccc
Confidence 532210 12222222222 11222233444 4567888888899999999998888777777777788876654
Q ss_pred -CCCEEEEEECCCeEEEEECCCCe---EEEEEecCCCC--eEEEEEeCCCCE-EEEEECCCeEEEEEccCCceeEEEcCC
Q psy8748 1835 -DGQYFVTGSVDKSCKLWDFREKK---CVQTFFGHEAD--VNSVCFHPSGLA-FATGSEDKTARLFDIRADQQIATYLPP 1907 (2004)
Q Consensus 1835 -dg~~LaSGS~DGsIrIWDlrs~k---~I~tl~~h~s~--ItsIafSPdg~~-LaSgS~DGtIrIWDLrtgk~i~t~~~~ 1907 (2004)
.|+.+++|..||.|++||.+... .+...+.|... |..+.+-+.|-. +++|+.||.|++||++.......+...
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee
Confidence 57999999999999999988543 46777888877 999999987654 999999999999999974222221111
Q ss_pred CC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc-------CCCCeEEEEEcCCCCEEEEEECCCeEE
Q psy8748 1908 NK---NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG-------HENRVTSISLSPNGMALVTSSWDQFVK 1977 (2004)
Q Consensus 1908 ~~---~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g-------Hs~~VtsLaFSPDg~~LaSgS~DGtIr 1977 (2004)
.+ ++..+++..+++...+|+|+. +.|+||++ .|+.+..++. ..+.+.+++|+|..-.+|+|+.|.+|.
T Consensus 1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred eccccCccceeeeeccCCCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 11 235899999999999999998 99999997 4444444432 345689999999999999999999999
Q ss_pred EEECCCCe
Q psy8748 1978 VWQESNTI 1985 (2004)
Q Consensus 1978 IWdlstg~ 1985 (2004)
||...++.
T Consensus 1377 iYs~~k~~ 1384 (1387)
T KOG1517|consen 1377 IYSCEKPR 1384 (1387)
T ss_pred EeecCCcC
Confidence 99987753
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.7e-16 Score=178.13 Aligned_cols=274 Identities=16% Similarity=0.254 Sum_probs=201.2
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEec--CCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCc
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQ--SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYE 1782 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSP--dg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~ 1782 (2004)
..+|++...|.|++||..+|+.+..++++...+..+.|.. ....+.+|+.||+|++||++.... .......++.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e----~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE----SARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh----hhheeccCCC
Confidence 5688888999999999999999999999999999999987 467899999999999999987532 1122223333
Q ss_pred -cceeeeEEe-CCCcEEEee----cCCeEEEEECCCCce-eEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECC
Q psy8748 1783 -GFLSSCRFI-DDTTLLTGS----GDMKIVTWNLETGQR-IHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFR 1854 (2004)
Q Consensus 1783 -~~Vssvafs-dd~~LlSgS----~DGtI~IWDl~tg~~-i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlr 1854 (2004)
....++... .++.+++|+ .+-.|.+||++..+. +......|...|++++|+| +.+.|++|+.||-|.+||++
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 345555554 344455554 356899999998877 6667789999999999999 56799999999999999997
Q ss_pred CCe---EEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEEccCCceeEEEcCCCCC----------CCeEEEEEcC
Q psy8748 1855 EKK---CVQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQQIATYLPPNKN----------SGFTSCAVSS 1920 (2004)
Q Consensus 1855 s~k---~I~tl~~h~s~ItsIafSPdg-~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~----------s~ItsLafSP 1920 (2004)
... .+.....+...|.++.|..++ +.+++-+..++..+|+++.+.....+..+... ..+.......
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCC
Confidence 543 233334677889999999877 45888888999999999988866555333111 1111121122
Q ss_pred CCCEEEEEeC-CCeEEEEECC---C---CeeeEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1921 SGRYIFCGSD-DNNVHVWDLL---K---TTHNGVLSG-HENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1921 dG~~LaSGSs-DGsIrIWDL~---t---ge~l~tL~g-Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
++...+.++. -|...++-+. + .+.+..+.+ |..-|.++.|...+.++.|||.||.+.+|..+
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 4445554444 5555555432 2 334455555 77788999999999999999999999999954
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-15 Score=175.16 Aligned_cols=316 Identities=19% Similarity=0.224 Sum_probs=211.2
Q ss_pred CeEEEEEccCCC-EEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcchh
Q psy8748 1557 QRNAVSFHACST-LLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSINI 1635 (2004)
Q Consensus 1557 ~VtsVsFSPdGk-~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSidi 1635 (2004)
+|.++.|.+++. .||| |+.|..||||.+.. +. ++ +
T Consensus 15 pv~s~dfq~n~~~~laT-~G~D~~iriW~v~r-------------~~-----~~---------------------~---- 50 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLAT-AGGDKDIRIWKVNR-------------SE-----PG---------------------G---- 50 (434)
T ss_pred ceEEEEeccCcccceec-ccCccceeeeeeee-------------cC-----CC---------------------C----
Confidence 799999999988 9999 99999999999977 00 00 0
Q ss_pred hhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCCCe
Q psy8748 1636 YLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGK 1715 (2004)
Q Consensus 1636 ~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGt 1715 (2004)
...+..-...|..|+..|+++.|+|+|..||+|+++|.
T Consensus 51 ------------------------------------------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 51 ------------------------------------------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE 88 (434)
T ss_pred ------------------------------------------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce
Confidence 00112235678889999999999999999999999999
Q ss_pred EEEEECC--------C--------CceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEe
Q psy8748 1716 LIIWDTW--------T--------GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELL 1779 (2004)
Q Consensus 1716 IrVWDl~--------T--------gk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~ 1779 (2004)
|.+|... + ........+|...|+.++|+|++.++++++.|..+++||+..+ .......
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G------~l~~~~~ 162 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG------QLLAILD 162 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc------eeEeecc
Confidence 9999755 2 1223456789999999999999999999999999999999754 6677788
Q ss_pred cCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1780 GYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC 1858 (2004)
Q Consensus 1780 gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~ 1858 (2004)
.|...+..++|.+-+ ++++-+.|...+.+.+...+.+.... + ..+..-++++. .....++|.-++.
T Consensus 163 dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~--~-~~m~~~~~~~~--------e~~s~rLfhDeTl-- 229 (434)
T KOG1009|consen 163 DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHG--L-DIMPAKAFNER--------EGKSTRLFHDETL-- 229 (434)
T ss_pred ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeee--e-eEeeecccCCC--------CcceeeeeecCch--
Confidence 899999999998654 46667777766666655444332210 0 00001111110 1112233322211
Q ss_pred EEEEecCCCCeEEEEEeCCCCEEEEEEC----CCe-----EEEEEccCCce-eEEEcCCCCCCCeEEEEEcC--------
Q psy8748 1859 VQTFFGHEADVNSVCFHPSGLAFATGSE----DKT-----ARLFDIRADQQ-IATYLPPNKNSGFTSCAVSS-------- 1920 (2004)
Q Consensus 1859 I~tl~~h~s~ItsIafSPdg~~LaSgS~----DGt-----IrIWDLrtgk~-i~t~~~~~~~s~ItsLafSP-------- 1920 (2004)
..-...++|+|+|..+++... +|. .++|+-+..+. ...+ +........+.++|
T Consensus 230 -------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l--p~~~k~~lavr~~pVy~elrp~ 300 (434)
T KOG1009|consen 230 -------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL--PSPKKPALAVRFSPVYYELRPL 300 (434)
T ss_pred -------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeec--CCCCcceEEEEeeeeEEEeccc
Confidence 112345667777777666432 222 23443322111 1111 11122233333332
Q ss_pred ----------CCCEEEEEeCCCeEEEEECCCCeeeEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q psy8748 1921 ----------SGRYIFCGSDDNNVHVWDLLKTTHNGVLS-GHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVW 1987 (2004)
Q Consensus 1921 ----------dG~~LaSGSsDGsIrIWDL~tge~l~tL~-gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~ 1987 (2004)
-+-.+++++ ...|++||..+..++.... -|-..|++++|++||..++..+.||...+-.++..++-
T Consensus 301 ~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 301 SSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 233455554 4579999999988887764 48899999999999999999999999998888776543
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=177.01 Aligned_cols=246 Identities=22% Similarity=0.319 Sum_probs=187.9
Q ss_pred eCCCCceEEEEEecCC--CEEEEeecCCeEEEEEcCCCC----------CCCcceEEEEEecCccceeeeEEeC--CCcE
Q psy8748 1731 PLRSAWVMSVAFAQSG--NFVACGGMDNMCTVYDLNNRD----------STGAAKVIRELLGYEGFLSSCRFID--DTTL 1796 (2004)
Q Consensus 1731 ~~Ht~~ItsLafSPdg--~~LaSGS~DGtIrVWDl~t~~----------~~~~~k~i~sl~gh~~~Vssvafsd--d~~L 1796 (2004)
..|.+.+..+.-++-+ .+.++-+..|.|.||++...- .....+.+.++.+|.+.-..+.|++ .+.+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3466667666666644 355556778999999986421 1234566778888998889999986 4568
Q ss_pred EEeecCCeEEEEECCCCceeEE--eeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeE
Q psy8748 1797 LTGSGDMKIVTWNLETGQRIHE--VAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREK---KCVQTFFGHEADVN 1870 (2004)
Q Consensus 1797 lSgS~DGtI~IWDl~tg~~i~~--il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~---k~I~tl~~h~s~It 1870 (2004)
++|..-+.|++|...+|..... -+.+|...|-.++|+| ....|++|+.||+|+|||+|.+ .++. .+.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCcee
Confidence 9999999999999988765432 2557999999999999 4568999999999999999987 3343 379999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEEccCC---ceeEEEcCCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe---
Q psy8748 1871 SVCFHPSGLAFATGSEDKTARLFDIRAD---QQIATYLPPNKNSGFTSCAVSS-SGRYIFCGSDDNNVHVWDLLKTT--- 1943 (2004)
Q Consensus 1871 sIafSPdg~~LaSgS~DGtIrIWDLrtg---k~i~t~~~~~~~s~ItsLafSP-dG~~LaSGSsDGsIrIWDL~tge--- 1943 (2004)
.|.|+..-.+|++|+.||+++|||+++. +.+..| ..|..+|+++.|+| +...|++++.|.+|.+||+....
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f--k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e 384 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF--KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE 384 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE--EeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence 9999998889999999999999999864 455666 46778999999999 45678888999999999984211
Q ss_pred -------------eeEEEccC--CCCeEEEEEcCC-CCEEEEEECCCeEEEEE
Q psy8748 1944 -------------HNGVLSGH--ENRVTSISLSPN-GMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1944 -------------~l~tL~gH--s~~VtsLaFSPD-g~~LaSgS~DGtIrIWd 1980 (2004)
+.+.+--| ...|..+.|++. ..++++.+.|| +.||.
T Consensus 385 e~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 385 EIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 11122234 346889999985 34678888888 55654
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-15 Score=171.77 Aligned_cols=287 Identities=20% Similarity=0.280 Sum_probs=216.1
Q ss_pred cccccccceeEEEEeC-----CCCEEEEEeCCCeEEEEECCCCc---eEEEee--CCCCceEEEEEecC----CCEEEEe
Q psy8748 1687 SLKGHINKVNSVHYSG-----DSRHCVSGSLDGKLIIWDTWTGN---KTQVIP--LRSAWVMSVAFAQS----GNFVACG 1752 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSP-----DG~~LASGS~DGtIrVWDl~Tgk---~l~ti~--~Ht~~ItsLafSPd----g~~LaSG 1752 (2004)
...+|..+|..++|++ ..+.+|++|. ..+.+|...... .++.+. .|......++|+-+ ..++++|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 4557899999999984 3346777765 478888765432 333332 36677888889764 3489999
Q ss_pred ecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEe--eccccCCeE
Q psy8748 1753 GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEV--AQAHIGDVV 1828 (2004)
Q Consensus 1753 S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~i--l~~h~~~It 1828 (2004)
|.-|.|+|.|+..+ +....+.+|...|..+.+.+.+ .+++++.|..|++||+++..++..+ ..+|.+.|.
T Consensus 112 G~~GvIrVid~~~~------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSG------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred cceeEEEEEecchh------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 99999999999754 5667888999999999999766 7999999999999999999988555 468999999
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeEEE----------------------------EEecCCCCeEEEEEeCCCCE
Q psy8748 1829 SISLSPDGQYFVTGSVDKSCKLWDFREKKCVQ----------------------------TFFGHEADVNSVCFHPSGLA 1880 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~----------------------------tl~~h~s~ItsIafSPdg~~ 1880 (2004)
++.|+.+|.+++++|.|.+|++|++...+... +-.-|...|.|+.|. |++
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ 263 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDF 263 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhh
Confidence 99999999999999999999999997322100 112356666777775 468
Q ss_pred EEEEECCCeEEEEEcc-CCce-------------eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-
Q psy8748 1881 FATGSEDKTARLFDIR-ADQQ-------------IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN- 1945 (2004)
Q Consensus 1881 LaSgS~DGtIrIWDLr-tgk~-------------i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l- 1945 (2004)
+++-+.++.|..|... -++. ...+..+...-.....+|++-+++||.|...|.|++||++..++.
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~ 343 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK 343 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc
Confidence 9998889999999872 1111 122222221222334566777899999999999999999877663
Q ss_pred -EEEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1946 -GVLS--GHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1946 -~tL~--gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
.++. .....|...+|+.||..|+...+||+|.-||.-
T Consensus 344 ~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 344 CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 1222 234579999999999999999999999999853
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-16 Score=200.46 Aligned_cols=245 Identities=16% Similarity=0.268 Sum_probs=196.0
Q ss_pred cceeEEEEeCCCCE----EEEEeCCCeEEEEECCC---C---ceEEEeeCCCCceEEEEEecCC-CEEEEeecCCeEEEE
Q psy8748 1693 NKVNSVHYSGDSRH----CVSGSLDGKLIIWDTWT---G---NKTQVIPLRSAWVMSVAFAQSG-NFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~----LASGS~DGtIrVWDl~T---g---k~l~ti~~Ht~~ItsLafSPdg-~~LaSGS~DGtIrVW 1761 (2004)
.+-+.++|.+.|.. ||.|..||.|.+||... + ..+.+...|++.|..+.|++.+ +.+++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 46779999987765 89999999999999765 2 3345667899999999999965 599999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEeecccc-CCeEEEEECCCCC-
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQAHI-GDVVSISLSPDGQ- 1837 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~-~~ItsLafSPdg~- 1837 (2004)
|+.+.+...... .....+.|.+++|... ..|++++.+|.+.|||++..+.+..+..... ..+..++|||++.
T Consensus 145 Dlnn~~tP~~~~----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 145 DLNKPETPFTPG----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred ccCCcCCCCCCC----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 998754322221 2335678899999843 4588899999999999999877655533222 4578999999764
Q ss_pred EEEEEECCC---eEEEEECCCC-eEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1838 YFVTGSVDK---SCKLWDFREK-KCVQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1838 ~LaSGS~DG---sIrIWDlrs~-k~I~tl~~h~s~ItsIafSPdg-~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
.+++++.|. .|.+||+|.. .+++.+.+|...|.++.|++.+ .++++++.|++|.+|+.++++.+..+.. ...+
T Consensus 221 ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW 298 (1049)
T KOG0307|consen 221 QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNW 298 (1049)
T ss_pred eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcc
Confidence 566666543 5999999854 4677788999999999999965 7899999999999999999999988843 5578
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe
Q psy8748 1913 FTSCAVSSSGR-YIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1913 ItsLafSPdG~-~LaSGSsDGsIrIWDL~tge 1943 (2004)
+..+.|+|... .+++++-||.|.||.+....
T Consensus 299 ~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 299 CFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999665 88899999999999986544
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-15 Score=174.42 Aligned_cols=283 Identities=18% Similarity=0.304 Sum_probs=199.9
Q ss_pred EEEEeCCCCEEEEEeCC---Ce--EEEEECCCCceEEEeeCC----CCceEEEEEec-------CCCEEEEeecCCeEEE
Q psy8748 1697 SVHYSGDSRHCVSGSLD---GK--LIIWDTWTGNKTQVIPLR----SAWVMSVAFAQ-------SGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~D---Gt--IrVWDl~Tgk~l~ti~~H----t~~ItsLafSP-------dg~~LaSGS~DGtIrV 1760 (2004)
.+..-|+...++++-.+ .. ++||+-... .. +-.| ...-.|+.|.. .|++++.|+.|..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~-nl--YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE-NL--YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCc-ce--eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 45555766777766543 22 455553221 11 1112 23345677743 2689999999999999
Q ss_pred EEcCCCCCCCcce---------------EEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCCCceeEEeeccc
Q psy8748 1761 YDLNNRDSTGAAK---------------VIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAH 1823 (2004)
Q Consensus 1761 WDl~t~~~~~~~k---------------~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h 1823 (2004)
||++-.....+.- ......+|.+.+..+.|.. .+.+++|+.|.+|++||+.++++...+ ..|
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-~~~ 285 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-THH 285 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-hhc
Confidence 9987533211111 0111235777777787774 456999999999999999999998544 578
Q ss_pred cCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEEccCC-ce
Q psy8748 1824 IGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRAD-QQ 1900 (2004)
Q Consensus 1824 ~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg-~~LaSgS~DGtIrIWDLrtg-k~ 1900 (2004)
.+.|.++.|+| ....+++|+.||+|.+.|.|........-.-.+.|-.++|.|.. ..++++..||+|+-+|+|.. ++
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~ 365 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP 365 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc
Confidence 99999999999 56789999999999999999533222222345789999999954 56888889999999999976 66
Q ss_pred eEEEcCCCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEE--EccCCCCeEEEEEcCCCC-EEEEEECCCeE
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSS-GRYIFCGSDDNNVHVWDLLKTTHNGV--LSGHENRVTSISLSPNGM-ALVTSSWDQFV 1976 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPd-G~~LaSGSsDGsIrIWDL~tge~l~t--L~gHs~~VtsLaFSPDg~-~LaSgS~DGtI 1976 (2004)
+.+. ..|..+|.+++++.. -.++++++.|+.|++|++........ -...-++..|.++.|+-. .++.||..+.+
T Consensus 366 vwt~--~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~ 443 (463)
T KOG0270|consen 366 VWTL--KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVL 443 (463)
T ss_pred eeEE--EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceE
Confidence 6666 567789999999984 46788999999999999864433211 111123467777777654 57778888899
Q ss_pred EEEECCCCe
Q psy8748 1977 KVWQESNTI 1985 (2004)
Q Consensus 1977 rIWdlstg~ 1985 (2004)
+|||+.+..
T Consensus 444 ~vwd~~~~~ 452 (463)
T KOG0270|consen 444 RVWDIFTNS 452 (463)
T ss_pred EEeecccCh
Confidence 999998764
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-14 Score=180.19 Aligned_cols=287 Identities=15% Similarity=0.243 Sum_probs=207.0
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC--C--ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT--G--NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T--g--k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
..|+..++|.++||+++++|+|..||.|.+|.--. + ...+.++-|...|.++.|+++|.+|.+||..|.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35788899999999999999999999999995322 2 3445678899999999999999999999999999999998
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEe----------eccccCCeEEEEEC
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEV----------AQAHIGDVVSISLS 1833 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~i----------l~~h~~~ItsLafS 1833 (2004)
+++ .+-+..-.+.+..+.+++++ .......|..|.+....+......+ .....+-.+.++++
T Consensus 282 T~~-------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 282 TGK-------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred CCC-------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence 753 23344456788888888554 5667788999999877554332221 11124456778999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEe-----c------CCCCeEEEEEeCCCCEEEEEEC--------CC--eEEE
Q psy8748 1834 PDGQYFVTGSVDKSCKLWDFREKKCVQTFF-----G------HEADVNSVCFHPSGLAFATGSE--------DK--TARL 1892 (2004)
Q Consensus 1834 Pdg~~LaSGS~DGsIrIWDlrs~k~I~tl~-----~------h~s~ItsIafSPdg~~LaSgS~--------DG--tIrI 1892 (2004)
|..+.++-.+..|.|.+||+-+...+..+. . +...++.++.+-.|+++++.-. || .+++
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 977788888899999999998776655543 1 1234677777778988888642 33 4778
Q ss_pred EEccCCce----eEEEcCCCCCCCeEE-EEEcCCCC-EEEEEeCCCeEEEEECCC----------CeeeEEEccCCCCeE
Q psy8748 1893 FDIRADQQ----IATYLPPNKNSGFTS-CAVSSSGR-YIFCGSDDNNVHVWDLLK----------TTHNGVLSGHENRVT 1956 (2004)
Q Consensus 1893 WDLrtgk~----i~t~~~~~~~s~Its-LafSPdG~-~LaSGSsDGsIrIWDL~t----------ge~l~tL~gHs~~Vt 1956 (2004)
|-...... ...+.. +|...+.. +..++... ..++++.||.++||-+.. +.+...-.-|..+++
T Consensus 435 W~~n~~~kt~~L~T~I~~-PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~ 513 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINN-PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPIT 513 (792)
T ss_pred EEEcCCcceeEEEEEEec-CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCccc
Confidence 87654332 233333 34444443 44444333 789999999999998732 233333334789999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1957 SISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1957 sLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
..+|+.||. +++++.|++|.+||..+.
T Consensus 514 a~~fs~dGs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 514 ALCFSQDGS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred chhhcCCCc-EEEEecCCEEEEecCCCh
Confidence 999999996 555666889999999883
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.7e-15 Score=171.35 Aligned_cols=295 Identities=19% Similarity=0.245 Sum_probs=217.1
Q ss_pred cccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC------CceEEEee-CCCCceEEEEEecCCCEEEEeecC
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT------GNKTQVIP-LRSAWVMSVAFAQSGNFVACGGMD 1755 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T------gk~l~ti~-~Ht~~ItsLafSPdg~~LaSGS~D 1755 (2004)
.+.+.+.+|.+.|+++.||.++++|++||.|..+++|++.. .+.+.... .|...|.|++|...+.++++|+.+
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 35667889999999999999999999999999999998753 24444433 356899999999999999999999
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEEeecCCeEEEEECCCCce-eEEe-eccccCCeEEEEE
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQR-IHEV-AQAHIGDVVSISL 1832 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~-i~~i-l~~h~~~ItsLaf 1832 (2004)
|+|...|+++.+. -.+.......+.|..+..++ ++.+++.+.+|.|.+||.+.... ...+ .........++.|
T Consensus 127 ~~VI~HDiEt~qs----i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 127 GTVIKHDIETKQS----IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred ceeEeeeccccee----eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 9999999986531 11112222344677776664 56789999999999999987652 2111 2234556788899
Q ss_pred CCC-CCEEEEEECCCeEEEEECCCCeE-EEE---EecC---CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEE
Q psy8748 1833 SPD-GQYFVTGSVDKSCKLWDFREKKC-VQT---FFGH---EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY 1904 (2004)
Q Consensus 1833 SPd-g~~LaSGS~DGsIrIWDlrs~k~-I~t---l~~h---~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~ 1904 (2004)
+|. ..+|++.+..|.+.+||.+.... +.. +.+. ...-.++.|+|+|+.|++--....-..||+.+.++....
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK 282 (609)
T ss_pred cCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence 995 45778888889999999985432 111 1111 223367889999999998877777788898875554322
Q ss_pred cCCCC-----CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------C-------------eeeEEEccCCCCeE
Q psy8748 1905 LPPNK-----NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK----------T-------------THNGVLSGHENRVT 1956 (2004)
Q Consensus 1905 ~~~~~-----~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t----------g-------------e~l~tL~gHs~~Vt 1956 (2004)
..++. ...+.+++|..|.. +++|+.+-.|++|.+.. | ..+..+++|..-+.
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~N 361 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPN 361 (609)
T ss_pred ccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccc
Confidence 22122 12356677775544 99999999999998732 1 12355789999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1957 SISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1957 sLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
.+.|+|...+|++.|-...+++|.--
T Consensus 362 QVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 362 QVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceeecCCcceEeccchhhheeccccc
Confidence 99999999999999999999999754
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.5e-16 Score=187.56 Aligned_cols=267 Identities=17% Similarity=0.231 Sum_probs=206.5
Q ss_pred cccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC--------CceEEEeeCCCCceEEEEEecCCCEEEEe
Q psy8748 1681 KLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT--------GNKTQVIPLRSAWVMSVAFAQSGNFVACG 1752 (2004)
Q Consensus 1681 k~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T--------gk~l~ti~~Ht~~ItsLafSPdg~~LaSG 1752 (2004)
+|.+..++..|.+.|+.++|.|....|++++.||+|++|++.. -+.+.++.+|.++|.|++..+++..+++|
T Consensus 283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 4566678999999999999999999999999999999999832 25677899999999999999999999999
Q ss_pred ecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEE
Q psy8748 1753 GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1753 S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf 1832 (2004)
+.||+|+.|++.... .. +|......+...+.+|.+.|+.+++
T Consensus 363 g~Dg~I~~w~~p~n~-----dp---------------------------------~ds~dp~vl~~~l~Ghtdavw~l~~ 404 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQ-----DP---------------------------------DDSYDPSVLSGTLLGHTDAVWLLAL 404 (577)
T ss_pred ccCceeeeeccCCCC-----Cc---------------------------------ccccCcchhccceeccccceeeeee
Confidence 999999999986211 00 1111112223445699999999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeEEEEEecC--CCCeEEEEEeCCC-CEEEEEECCCeEEEEEccCCceeEEEcCCC-
Q psy8748 1833 SPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH--EADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQQIATYLPPN- 1908 (2004)
Q Consensus 1833 SPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h--~s~ItsIafSPdg-~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~- 1908 (2004)
+.....|++++.||+++.|+.....+ .++... .+...++.+-... .+.++...-|.-.++++.....+..+....
T Consensus 405 s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~ 483 (577)
T KOG0642|consen 405 SSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS 483 (577)
T ss_pred cccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence 99988999999999999999876665 333322 2233455554433 233333334444455555555544442221
Q ss_pred ----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1909 ----KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1909 ----~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
....+..+.++|.+.+.+++..|+.|+++|..++..+....+|...++++++.|+|.+|++++.||.|++|++...
T Consensus 484 ~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 484 PGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred CcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 1245778899999999999999999999999999999999999999999999999999999999999999999775
Q ss_pred eE
Q psy8748 1985 IV 1986 (2004)
Q Consensus 1985 ~l 1986 (2004)
.+
T Consensus 564 ~~ 565 (577)
T KOG0642|consen 564 TC 565 (577)
T ss_pred he
Confidence 43
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-14 Score=181.10 Aligned_cols=269 Identities=18% Similarity=0.220 Sum_probs=200.5
Q ss_pred CeEEEEECCCCceEEEeeCCCCceEEEEEec-CCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQ-SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID 1792 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSP-dg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd 1792 (2004)
+.+.||+++........-.....|++++|+| +.+.++.|+.+|.|.+||+..+..............|...+..+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 5799999988744444444567899999999 567888899999999999988765433444455667888999999873
Q ss_pred ---CCcEEEeecCCeEEEEECCCCceeEEe-----e------ccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCe
Q psy8748 1793 ---DTTLLTGSGDMKIVTWNLETGQRIHEV-----A------QAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKK 1857 (2004)
Q Consensus 1793 ---d~~LlSgS~DGtI~IWDl~tg~~i~~i-----l------~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k 1857 (2004)
+..+++++.||.|+.|+++.-...... . ......+++++|.+ +.+.|++|+.+|.|.--+....+
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 245999999999999988653321111 0 12234688999988 56689999999998874433221
Q ss_pred --------EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEcc-CCceeEEEcCCCCCCCeEEEEEcCCC-CEEEE
Q psy8748 1858 --------CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR-ADQQIATYLPPNKNSGFTSCAVSSSG-RYIFC 1927 (2004)
Q Consensus 1858 --------~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLr-tgk~i~t~~~~~~~s~ItsLafSPdG-~~LaS 1927 (2004)
.+..+..|.++|+++.++|-+..++..+.|.+++||... ...++..+ ..+...+++++|||.. ..+++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~--~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL--DSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh--hhccceeeeeEEcCcCceEEEE
Confidence 233556788999999999977665555559999999977 44444444 3334559999999955 57778
Q ss_pred EeCCCeEEEEECCC--CeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1928 GSDDNNVHVWDLLK--TTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1928 GSsDGsIrIWDL~t--ge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
+..||.|.+||+.. ..++.+...+....+.+.|++.|+.|+.|+..|.+.+|++...
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 88899999999954 4455555556677788899999999999999999999999754
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-14 Score=179.66 Aligned_cols=299 Identities=15% Similarity=0.225 Sum_probs=204.4
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
.+.++-|.+.|++++|+++|.+|++||..|.+.+|.+.+++ .+-++.-.++|..+.++||++..+....|..|.+....
T Consensus 244 ~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 34567799999999999999999999999999999999998 55567788999999999999999999999999999875
Q ss_pred CCCCCCcceEEEE-----EecCccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEee----c------cccCCeE
Q psy8748 1765 NRDSTGAAKVIRE-----LLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVA----Q------AHIGDVV 1828 (2004)
Q Consensus 1765 t~~~~~~~k~i~s-----l~gh~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il----~------~h~~~It 1828 (2004)
+.........+.. .....+-.+.+.+.+ .+.++-.+..|.|.+||+-+...+.++. . .+...++
T Consensus 323 dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~it 402 (792)
T KOG1963|consen 323 DLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGIT 402 (792)
T ss_pred chhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeee
Confidence 5332111111111 111234455555655 4568888999999999998877664441 1 1233467
Q ss_pred EEEECCCCCEEEEEE--------CCC--eEEEEECCCCeEE-----EEEecCCCCeEEEEEeC-C-CCEEEEEECCCeEE
Q psy8748 1829 SISLSPDGQYFVTGS--------VDK--SCKLWDFREKKCV-----QTFFGHEADVNSVCFHP-S-GLAFATGSEDKTAR 1891 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS--------~DG--sIrIWDlrs~k~I-----~tl~~h~s~ItsIafSP-d-g~~LaSgS~DGtIr 1891 (2004)
+++.+..|.+++++- .|| .+++|-......- .....|+..+...++.+ . ...+++++.||.++
T Consensus 403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE
Confidence 777777898888864 233 5788976544321 22246777666666654 2 33799999999999
Q ss_pred EEEccCCcee--------EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEEEccCCCCeEEEEEcC
Q psy8748 1892 LFDIRADQQI--------ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK-TTHNGVLSGHENRVTSISLSP 1962 (2004)
Q Consensus 1892 IWDLrtgk~i--------~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t-ge~l~tL~gHs~~VtsLaFSP 1962 (2004)
+|-+...+.+ ......-+..+++.++|+.||..+++| .+++|.+||..+ .+..........++..+.|..
T Consensus 483 iW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~ 561 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTEGSRNWPIAELLFTA 561 (792)
T ss_pred EEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhccccccccchHhHhhhc
Confidence 9998432221 122223467789999999999776665 688999999988 444444333334444444432
Q ss_pred CC--CEEEEEECCCeEEEEECCCCe
Q psy8748 1963 NG--MALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1963 Dg--~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
.. ...+.....+.+.+|++-+..
T Consensus 562 ~~~~~~~~~~~~~~~l~~WNll~~~ 586 (792)
T KOG1963|consen 562 QTQNDGALVHATQQRLSVWNLLSMS 586 (792)
T ss_pred ccccccceeeccCceEehHhhhhhh
Confidence 11 122333446788999987764
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.7e-14 Score=162.01 Aligned_cols=235 Identities=18% Similarity=0.306 Sum_probs=177.9
Q ss_pred cceeEEEEe-------CCCCEEEEEeCCCeEEEEECCCCceEEEeeC--CC---CceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1693 NKVNSVHYS-------GDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL--RS---AWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1693 ~~VtsLaFS-------PDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~--Ht---~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
+.|...+|- |+..++|+.+.|.-|.+||.-+|+....+.. |. ....+++|+|||..|++|. ...|++
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirv 183 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRV 183 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEE
Confidence 345555553 6778999999999999999999998887754 32 2457899999999999875 567999
Q ss_pred EEcCCC-CCCCcceEE-EEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1761 YDLNNR-DSTGAAKVI-RELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1761 WDl~t~-~~~~~~k~i-~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
+|+... ......... +...+..+.+.+++|++. ..+++|+....+-+|.-..+..+ ....+|.+.|+.++|+++|
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl-~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL-QLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce-eeecccCCCeeeEEeccCc
Confidence 999433 221111111 224456788899999854 45889999999999988777776 4556999999999999999
Q ss_pred CEEEEEEC-CCeEEEEECCCC-eEEEEEecCCC-CeEEE--EEeCCCCEEEEEECCCeEEEEEccC-CceeEEEcCCCCC
Q psy8748 1837 QYFVTGSV-DKSCKLWDFREK-KCVQTFFGHEA-DVNSV--CFHPSGLAFATGSEDKTARLFDIRA-DQQIATYLPPNKN 1910 (2004)
Q Consensus 1837 ~~LaSGS~-DGsIrIWDlrs~-k~I~tl~~h~s-~ItsI--afSPdg~~LaSgS~DGtIrIWDLrt-gk~i~t~~~~~~~ 1910 (2004)
+.|++|.. |-.|-.||++.. .++..+..|.+ .-..| ...|++++|++|+.||.|++||+++ +..+..+ ..+.
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~--~~~s 340 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT--GNYS 340 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc--cccc
Confidence 99999975 678999999854 45556666654 23334 4468999999999999999999988 5545444 4555
Q ss_pred CCeEEEEEcCCCCEEEEEeCC
Q psy8748 1911 SGFTSCAVSSSGRYIFCGSDD 1931 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGSsD 1931 (2004)
..+..++++|--.++++++..
T Consensus 341 d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccceecCcccceeeeccCc
Confidence 678899999998888887654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-13 Score=164.37 Aligned_cols=283 Identities=12% Similarity=0.182 Sum_probs=183.3
Q ss_pred EEEeCCCeEEEEECCC-Cc--eEEEeeCCCCceEEEEEecCCCEEEEee-cCCeEEEEEcCCCCCCCcceEEEEEecCcc
Q psy8748 1708 VSGSLDGKLIIWDTWT-GN--KTQVIPLRSAWVMSVAFAQSGNFVACGG-MDNMCTVYDLNNRDSTGAAKVIRELLGYEG 1783 (2004)
Q Consensus 1708 ASGS~DGtIrVWDl~T-gk--~l~ti~~Ht~~ItsLafSPdg~~LaSGS-~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~ 1783 (2004)
++...++.|.+||+.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++... ......... ..+
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g---~l~~~~~~~-~~~ 80 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG---ALTFAAESP-LPG 80 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC---ceEEeeeec-CCC
Confidence 3446789999999964 43 444444 345577899999999887664 57889999996321 122222222 223
Q ss_pred ceeeeEEeCCCc-EEEee-cCCeEEEEECCCCceeEE-e-eccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeE
Q psy8748 1784 FLSSCRFIDDTT-LLTGS-GDMKIVTWNLETGQRIHE-V-AQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKC 1858 (2004)
Q Consensus 1784 ~Vssvafsdd~~-LlSgS-~DGtI~IWDl~tg~~i~~-i-l~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~ 1858 (2004)
....+.+.+++. +++++ .++.|.+|++++...... . ...+.....+++++|+++++++++ .++.|.+||+.+...
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 456777775554 55544 489999999974321111 1 112234567789999999886655 568999999976332
Q ss_pred EEE-----Ee-cCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEEccC--Cc--eeEEEcCC-C---CCCCeEEEEEcCCCC
Q psy8748 1859 VQT-----FF-GHEADVNSVCFHPSGLAFATGSE-DKTARLFDIRA--DQ--QIATYLPP-N---KNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1859 I~t-----l~-~h~s~ItsIafSPdg~~LaSgS~-DGtIrIWDLrt--gk--~i~t~~~~-~---~~s~ItsLafSPdG~ 1923 (2004)
+.. .. ........+.|+|+|++++++.. ++.|.+||+.. ++ ....+... . .......+.++|+|+
T Consensus 161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 211 11 12345678999999999988876 89999999973 22 22222111 1 112234688999999
Q ss_pred EEEEEeC-CCeEEEEECCCCeeeEEEccC---CCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCC-CeEEEEEEeecC
Q psy8748 1924 YIFCGSD-DNNVHVWDLLKTTHNGVLSGH---ENRVTSISLSPNGMALVTSSW-DQFVKVWQESN-TIVWKVLKVYNL 1995 (2004)
Q Consensus 1924 ~LaSGSs-DGsIrIWDL~tge~l~tL~gH---s~~VtsLaFSPDg~~LaSgS~-DGtIrIWdlst-g~l~k~Ik~~~~ 1995 (2004)
+++++.. ++.|.+|++........+.++ ......+.|+|+|++|++++. +++|.+|+++. ...+..++.+..
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~ 318 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV 318 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc
Confidence 9999865 689999998553322222222 124567899999999998876 89999998853 223455555543
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-14 Score=174.19 Aligned_cols=239 Identities=16% Similarity=0.269 Sum_probs=183.0
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
..+|+||.+.|+|++|+.||+.+|+|+.|+.|.+|+-+-...+ . ..|++.|.|+.|+|-...+++++-.. .-+|..+
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k-YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~ 122 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K-YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPE 122 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-eccCCeeeEeecCchHHHhhhcchhh-ccccChh
Confidence 3457889999999999999999999999999999985322222 1 35999999999999999999987654 6688765
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEe--eccccCCeEEEEECCCC-----
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEV--AQAHIGDVVSISLSPDG----- 1836 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~i--l~~h~~~ItsLafSPdg----- 1836 (2004)
.... ........+.+++|.+ +.+++.|-.+|+|.+-+-...... .+ ..+...+|.+++|+|..
T Consensus 123 qK~V--------~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~-~I~Rpgg~Nspiwsi~~~p~sg~G~~ 193 (1081)
T KOG1538|consen 123 QKSV--------SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV-KIERPGGSNSPIWSICWNPSSGEGRN 193 (1081)
T ss_pred hhhH--------HhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce-EEeCCCCCCCCceEEEecCCCCCCcc
Confidence 4211 0112244677788874 556888999999999865433332 33 34567889999999953
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
..+++.....++.+|.+. |+.+..-+..+-...|+.+.++|.++..|+.|+.+++|-. .|-.+.+.. .....|+.+
T Consensus 194 di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg--~~D~WIWtV 269 (1081)
T KOG1538|consen 194 DILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVG--EQDSWIWTV 269 (1081)
T ss_pred ceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecc--ccceeEEEE
Confidence 367777888888888764 4445444445566789999999999999999999999974 466666653 345789999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1917 AVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
+..|++.+++.|+.||+|-.|++
T Consensus 270 ~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 270 QAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEccCCceEEEEEccCeeehhhh
Confidence 99999999999999999999987
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-15 Score=187.61 Aligned_cols=290 Identities=18% Similarity=0.207 Sum_probs=228.2
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
++.|.||..+|.|..|...|.++++|++|..++||...++.+.....+|.+.|+.++.+.+..++++++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 56688999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEE---eeccccCCeEEEEECCCCCEEEE
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHE---VAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~---il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
.+ ..+..+.+|.+.|++++|++-. +.+.||++++||.+-.-.+.. ........+.++.|...+..+++
T Consensus 263 ~~------~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 263 DG------APVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred CC------chHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 64 5566788999999999998755 788999999999872111100 01122345677778778889999
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC
Q psy8748 1842 GSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPS-GLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1842 GS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPd-g~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP 1920 (2004)
|+.|+.-..|...... .+...+.-+.++.+ ..+.+++-.+-.+.+|++.+|....... ++...+..+.++|
T Consensus 334 gs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~--ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM--GHSDEVYVLDVHP 405 (1113)
T ss_pred ccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc--ccccceeeeeecC
Confidence 9999998888764321 11111111112212 2456667778889999999998776663 4556788899999
Q ss_pred CC-CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1921 SG-RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1921 dG-~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
-+ +...+++.||...|||+..|.+++......+.+.+-+|++||..++....-|.++|.....++..+..+
T Consensus 406 fn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak 477 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAK 477 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccccccc
Confidence 55 455578899999999999998887765445677888999999999999888999999888776554443
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-14 Score=161.09 Aligned_cols=245 Identities=16% Similarity=0.249 Sum_probs=188.3
Q ss_pred cccceeEEEEeCC----CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCC-CEEEEeecCCeEEEEEcCC
Q psy8748 1691 HINKVNSVHYSGD----SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSG-NFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1691 Ht~~VtsLaFSPD----G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg-~~LaSGS~DGtIrVWDl~t 1765 (2004)
|...-..++|+-| ..++|.||.-|.|+|.|+.+++....+.+|...|..+.++|+. +++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 4455667777643 3489999999999999999999999999999999999999964 7999999999999999987
Q ss_pred CCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEE--------------------------
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHE-------------------------- 1818 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~-------------------------- 1818 (2004)
.. ......-..+|.+.|.++.|+ ++.++++++.|..+++|++...+....
T Consensus 168 ~~---Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 168 DV---CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred Ce---EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 53 344555677899999999999 556799999999999999984321100
Q ss_pred -eeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCC-C-------------eEEEEEecCCCCeEEEE--EeCCCCEE
Q psy8748 1819 -VAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE-K-------------KCVQTFFGHEADVNSVC--FHPSGLAF 1881 (2004)
Q Consensus 1819 -il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs-~-------------k~I~tl~~h~s~ItsIa--fSPdg~~L 1881 (2004)
...-|...|-|+.|- |+++++-+.++.|..|.... . ..+..+.-....|+-+. |.|-++.+
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 122355556666665 67899989999999998721 1 12233334445566554 45667899
Q ss_pred EEEECCCeEEEEEccCCcee--EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1882 ATGSEDKTARLFDIRADQQI--ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1882 aSgS~DGtIrIWDLrtgk~i--~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
+.|...|+|.+||++..... .++........|...+|+.||.+|+..++||+|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999876652 233333445678999999999999999999999999953
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-12 Score=152.07 Aligned_cols=291 Identities=18% Similarity=0.243 Sum_probs=209.7
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC--CeEEEEEcCCCCCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD--NMCTVYDLNNRDST 1769 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D--GtIrVWDl~t~~~~ 1769 (2004)
...++.+.|+.+...|..|+.|| .++|+................|.-+-|+ ..+++..+.+ ..++++++..+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~-- 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKT-- 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCc--
Confidence 45677888999999999999988 6788876655543334444556666776 5555555544 458888876431
Q ss_pred CcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeecc--ccCCeEEEEECCCCCEEEEEE--CC
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA--HIGDVVSISLSPDGQYFVTGS--VD 1845 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~--h~~~ItsLafSPdg~~LaSGS--~D 1845 (2004)
.+.. ......|.++.+..+ +++++-.+ .|+|||+++.+.++.+... +...+.+++++..+.+++.-+ ..
T Consensus 80 ----~ICe-~~fpt~IL~VrmNr~-RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 80 ----TICE-IFFPTSILAVRMNRK-RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred ----eEEE-EecCCceEEEEEccc-eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 1111 123445566665544 44444443 3999999999998877544 555677777777777887643 46
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCe-EEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1846 KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKT-ARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1846 GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGt-IrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
|.|.+||..+-+.+..+..|++.+.+++|+++|.++++++..|+ ||||.+.+|+.+..|........|.+++|+|++.+
T Consensus 153 GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 89999999999999999999999999999999999999999998 89999999999999976666677899999999999
Q ss_pred EEEEeCCCeEEEEECCCCeee-------------------------------------EEEccCCC---CeEEEEEcCCC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHN-------------------------------------GVLSGHEN---RVTSISLSPNG 1964 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l-------------------------------------~tL~gHs~---~VtsLaFSPDg 1964 (2004)
|++.+..++|++|.+...... ...+.... .+..+.-.+..
T Consensus 233 L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~ 312 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKI 312 (391)
T ss_pred EEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCC
Confidence 999999999999987431100 00000011 12222223467
Q ss_pred CEEEEEECCCeEEEEECC--CCeEEEEEEeec
Q psy8748 1965 MALVTSSWDQFVKVWQES--NTIVWKVLKVYN 1994 (2004)
Q Consensus 1965 ~~LaSgS~DGtIrIWdls--tg~l~k~Ik~~~ 1994 (2004)
.++..++.||.++.|.+. +|.....++.+.
T Consensus 313 ~~v~vas~dG~~y~y~l~~~~gGec~lik~h~ 344 (391)
T KOG2110|consen 313 PRVLVASYDGHLYSYRLPPKEGGECALIKRHF 344 (391)
T ss_pred CEEEEEEcCCeEEEEEcCCCCCceeEEEEeec
Confidence 889999999999999885 355556666544
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.2e-15 Score=174.79 Aligned_cols=298 Identities=18% Similarity=0.303 Sum_probs=230.4
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe-eCCCCceEEEEEecC--CCEEEEeecCCeEEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI-PLRSAWVMSVAFAQS--GNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti-~~Ht~~ItsLafSPd--g~~LaSGS~DGtIrV 1760 (2004)
....|.+|.+.|+.+.|+..|..+++|+.|..|.+||+..++....+ .+|...|....|.|. ...+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 45678899999999999999999999999999999999999877666 578888888889884 568999999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEee--ccccC---CeEEEEEC
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEVA--QAHIG---DVVSISLS 1833 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~il--~~h~~---~ItsLafS 1833 (2004)
=.+.... .......+..|.+.+..++.-++. .|.+++.|+.+.-+|++.+.....+. ..+.. ...+++.+
T Consensus 214 s~i~~t~---~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 214 SEILETG---YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeecccc---ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 8876432 233345566788888888877543 59999999999999998776443321 22222 56788999
Q ss_pred CCC-CEEEEEECCCeEEEEECCCCeE------EEEEec------CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC--C
Q psy8748 1834 PDG-QYFVTGSVDKSCKLWDFREKKC------VQTFFG------HEADVNSVCFHPSGLAFATGSEDKTARLFDIRA--D 1898 (2004)
Q Consensus 1834 Pdg-~~LaSGS~DGsIrIWDlrs~k~------I~tl~~------h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt--g 1898 (2004)
|-. ..+++|+.|-.+++||.+.-.. +..+.. ....|+|++|+.++.-+.++..|-.|+++.-.- |
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 854 4899999999999999874321 223322 234699999998887777788888899995322 2
Q ss_pred ----------ceeEE-EcCCCCCCCeEEEE-EcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCE
Q psy8748 1899 ----------QQIAT-YLPPNKNSGFTSCA-VSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMA 1966 (2004)
Q Consensus 1899 ----------k~i~t-~~~~~~~s~ItsLa-fSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~ 1966 (2004)
..... +..+.....|..+- |-|...|+++|++-|.|.||+-.+++.+..+.+...-|+|+.-+|.-..
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 11111 33233333455554 5678899999999999999999999999999888889999999999999
Q ss_pred EEEEECCCeEEEEECCCC
Q psy8748 1967 LVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1967 LaSgS~DGtIrIWdlstg 1984 (2004)
||++|-|.-|+||...+.
T Consensus 451 LAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 451 LASSGIDHDVKIWTPLTA 468 (559)
T ss_pred hhccCCccceeeecCCcc
Confidence 999999999999987443
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=161.39 Aligned_cols=284 Identities=20% Similarity=0.212 Sum_probs=198.8
Q ss_pred cccccccccceeEEEEeC-CCCEEEEEeCC-------CeEEEEECCCC---------ceEEEee-CCCCceEEEEEecCC
Q psy8748 1685 KKSLKGHINKVNSVHYSG-DSRHCVSGSLD-------GKLIIWDTWTG---------NKTQVIP-LRSAWVMSVAFAQSG 1746 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSP-DG~~LASGS~D-------GtIrVWDl~Tg---------k~l~ti~-~Ht~~ItsLafSPdg 1746 (2004)
.+.|..|.+.|+.++-+| +.+.|+|+..+ ..+.||.+... +++..+. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 346778999999999999 44566666543 24789987543 2223333 345689999999999
Q ss_pred CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCCCceeEEeecccc
Q psy8748 1747 NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHI 1824 (2004)
Q Consensus 1747 ~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~ 1824 (2004)
..+++.. |..|.+|+++........-......++....++-.|++ +..-+....|+++..||.++.+....+...|.
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhc
Confidence 9998877 77899999987543211111112223455667777775 44567777899999999999998888889999
Q ss_pred CCeEEEEECCCCC-EEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEEccCCcee
Q psy8748 1825 GDVVSISLSPDGQ-YFVTGSVDKSCKLWDFREK-KCVQTFFGHEADVNSVCFHPS-GLAFATGSEDKTARLFDIRADQQI 1901 (2004)
Q Consensus 1825 ~~ItsLafSPdg~-~LaSGS~DGsIrIWDlrs~-k~I~tl~~h~s~ItsIafSPd-g~~LaSgS~DGtIrIWDLrtgk~i 1901 (2004)
..|..+.|+|+.+ +|++++.||.|+|||.+.. .++..+.+|...|+++.|+|. ...+++|+.|..|.+|....-...
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 9999999999766 6788999999999999854 568899999999999999994 567889999999999986533222
Q ss_pred EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCE-EEEEECCCeEEEEE
Q psy8748 1902 ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMA-LVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1902 ~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~-LaSgS~DGtIrIWd 1980 (2004)
..+........ .+ +.|..=++=-+ ....+.++..|.+.|.+++|+.-..+ +|+-+.||.+.|=+
T Consensus 295 ~qi~~~~dese------~e--------~~dseer~kpL-~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 295 QQIEFEDDESE------SE--------DEDSEERVKPL-QDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS 359 (370)
T ss_pred ccccccccccc------Cc--------chhhHHhcccc-cccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence 22211111000 00 00100000011 12234566689999999999875554 67789999998877
Q ss_pred CCCC
Q psy8748 1981 ESNT 1984 (2004)
Q Consensus 1981 lstg 1984 (2004)
+...
T Consensus 360 V~r~ 363 (370)
T KOG1007|consen 360 VPRF 363 (370)
T ss_pred CChh
Confidence 7653
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-15 Score=184.56 Aligned_cols=281 Identities=17% Similarity=0.255 Sum_probs=215.1
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
|...|.|+.|...|.|+++ |++|..++||...+ .+
T Consensus 189 H~naVyca~fDrtg~~Iit-gsdd~lvKiwS~et-------------~~------------------------------- 223 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIIT-GSDDRLVKIWSMET-------------AR------------------------------- 223 (1113)
T ss_pred hhhheeeeeeccccceEee-cCccceeeeeeccc-------------hh-------------------------------
Confidence 8889999999999999999 99999999999777 11
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCC
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLD 1713 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~D 1713 (2004)
+.....||.+.|+.++.+.+..++++++.|
T Consensus 224 --------------------------------------------------~lAs~rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 224 --------------------------------------------------CLASCRGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred --------------------------------------------------hhccCCCCccccchhccchhhhhhhhcccC
Confidence 233467899999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-C
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-D 1792 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-d 1792 (2004)
..|++|.+.++..+..+.+|++.|++++|+|-. +.+.||++++||.+-......... ..+ ...+.+..+.+. .
T Consensus 254 ~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp-~~~-~~~~~~~s~~~~~~ 327 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRP-LKF-TEKDLVDSILFENN 327 (1113)
T ss_pred ceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCC-CCc-ccccceeeeecccc
Confidence 999999999999999999999999999999965 778899999999872100000000 001 112333334443 4
Q ss_pred CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC-CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEE
Q psy8748 1793 DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD-GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNS 1871 (2004)
Q Consensus 1793 d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd-g~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~Its 1871 (2004)
...+.+++.|+.-..|.+..-.. +...+.-+.++.+ ..+.+++-.+-.+++|++.++.......+|...+..
T Consensus 328 ~~~f~Tgs~d~ea~n~e~~~l~~-------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yv 400 (1113)
T KOG0644|consen 328 GDRFLTGSRDGEARNHEFEQLAW-------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYV 400 (1113)
T ss_pred ccccccccCCcccccchhhHhhh-------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceee
Confidence 45688999999888887643211 1111111111111 245566667788999999999999999999999999
Q ss_pred EEEeCC-CCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q psy8748 1872 VCFHPS-GLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTH 1944 (2004)
Q Consensus 1872 IafSPd-g~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~ 1944 (2004)
+.++|- .....+++.||...|||+-.|..+..+... ...+...+|+++|..++....-|.++|.....++.
T Consensus 401 Ld~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 401 LDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred eeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 999994 455678999999999999999888877633 46788899999999999999999999998755443
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=161.07 Aligned_cols=233 Identities=19% Similarity=0.322 Sum_probs=182.6
Q ss_pred EeeCCCCceEEEEEec-CCCEEEEeecCCeEEEEEcCCCCCC-CcceEEEEEecCccceeeeEEeCC--CcEEEeecCCe
Q psy8748 1729 VIPLRSAWVMSVAFAQ-SGNFVACGGMDNMCTVYDLNNRDST-GAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMK 1804 (2004)
Q Consensus 1729 ti~~Ht~~ItsLafSP-dg~~LaSGS~DGtIrVWDl~t~~~~-~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGt 1804 (2004)
.+.+|+++|..++|+| +.+.|++|+.|.+|.||.+..+... ........+.+|...|..+.|++. +.+++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999999 5678999999999999999765432 234567889999999999999964 67999999999
Q ss_pred EEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC-CeEEEEEeCCCCEEEE
Q psy8748 1805 IVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA-DVNSVCFHPSGLAFAT 1883 (2004)
Q Consensus 1805 I~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s-~ItsIafSPdg~~LaS 1883 (2004)
|.+||+.+|+.+..+ .|.+.|.++.|+.+|.++++++.|..|+|||.++++.+..-.+|.+ .-..+.|-.+|..+-+
T Consensus 156 v~iWnv~tgeali~l--~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 156 VSIWNVGTGEALITL--DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred EEEEeccCCceeeec--CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 999999999988665 4999999999999999999999999999999999999988878865 4556778888885544
Q ss_pred EE---CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEE-Ec--cCCCCeE
Q psy8748 1884 GS---EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIF-CGSDDNNVHVWDLLKTTHNGV-LS--GHENRVT 1956 (2004)
Q Consensus 1884 gS---~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~La-SGSsDGsIrIWDL~tge~l~t-L~--gHs~~Vt 1956 (2004)
|- .+..+-+||..+......+..-....+|.---|++|.++++ +|-.||.|+.|.+.+..+... +. ....+=.
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQR 313 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQR 313 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccc
Confidence 43 36789999987665544443345556787778899888776 555699999999977654322 21 1233444
Q ss_pred EEEEcCC
Q psy8748 1957 SISLSPN 1963 (2004)
Q Consensus 1957 sLaFSPD 1963 (2004)
++.|-|.
T Consensus 314 G~g~mPK 320 (472)
T KOG0303|consen 314 GMGFMPK 320 (472)
T ss_pred ccccccc
Confidence 5555554
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.5e-13 Score=147.55 Aligned_cols=275 Identities=16% Similarity=0.213 Sum_probs=196.5
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCC---------C-ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT---------G-NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T---------g-k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
..|.+-+|+|.+++|+.|..+|+|.+..+++ | ..+....+|+++|+.++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3566778999999999999999999998753 2 2344558899999999998 66777776 49999999
Q ss_pred cCCCCCCCcceE-------EEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1763 LNNRDSTGAAKV-------IRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1763 l~t~~~~~~~k~-------i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
.+........+. .+.-...-..|.++... ..+.++.++.|+.++-||+++|+.. ..+++|.+.|.++.--.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~-r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ-REYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE-EEEcCCcceeeeeeecc
Confidence 875432111010 00001112345555555 3455777779999999999999876 56689999999999866
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecC----------CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEE
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFREKKCVQTFFGH----------EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY 1904 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h----------~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~ 1904 (2004)
....+++|+.||++++||.++++.+..+... ...|.+++. +..++++|+ ...+.+|.++..++...+
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEE
Confidence 6667999999999999999999998877432 223555554 455888775 678999999999998888
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEE
Q psy8748 1905 LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNG-MALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1905 ~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg-~~LaSgS~DGtIrIWd 1980 (2004)
..+. .+..+.|. .+.+++++..+.|.-|.+ +|.............++..|+... +++-.+|....+.|+.
T Consensus 244 pipa---~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 244 PIPA---RVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred eccc---ceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 6554 46777775 456788888888999986 555555555555556666665443 3444556666676653
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.2e-14 Score=177.02 Aligned_cols=249 Identities=17% Similarity=0.214 Sum_probs=184.5
Q ss_pred ccceeEEEEeC-CCCEEEEEeCCCeEEEEECCCCce--EEE----eeCCCCceEEEEEecCC--CEEEEeecCCeEEEEE
Q psy8748 1692 INKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWTGNK--TQV----IPLRSAWVMSVAFAQSG--NFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1692 t~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~Tgk~--l~t----i~~Ht~~ItsLafSPdg--~~LaSGS~DGtIrVWD 1762 (2004)
...|+|++|+| +..++|.|..+|.|.+||+..+.. ... ...|..++..+.|..+. .-+++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 46899999998 566788889999999999988765 222 24688999999997654 4599999999999998
Q ss_pred cCCCCCCCcceEEEEE------ecCccceeeeEEe--CCCcEEEeecCCeEEEEECCC---Cc----eeEEeeccccCCe
Q psy8748 1763 LNNRDSTGAAKVIREL------LGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLET---GQ----RIHEVAQAHIGDV 1827 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl------~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~t---g~----~i~~il~~h~~~I 1827 (2004)
++.............. ......++++.|. +...+++|+.+|.|..-+... +. ..+.....|.+.|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 8754321111111111 1234456777777 445699999999998844332 22 1122345788999
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECC-CCeEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEEccCCceeEEEc
Q psy8748 1828 VSISLSPDGQYFVTGSVDKSCKLWDFR-EKKCVQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS~DGsIrIWDlr-s~k~I~tl~~h~s~ItsIafSPdg-~~LaSgS~DGtIrIWDLrtgk~i~t~~ 1905 (2004)
.++.++|=+..++..+.|.+++||... ...++..+..+...+++++|||.. ..|+++..||.+.+||+..........
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s 481 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS 481 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence 999999966655554459999999988 667777777788889999999965 467788889999999997655433332
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1906 PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1906 ~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
........+.+.|+++|+.+++|+..|++++|++.
T Consensus 482 ~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 482 QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 23334567788899999999999999999999985
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.8e-12 Score=152.30 Aligned_cols=244 Identities=16% Similarity=0.254 Sum_probs=159.7
Q ss_pred cceeEEEEeCCCCEEEEEe-CCCeEEEEECC-CCce--EEEeeCCCCceEEEEEecCCCEEEEeec-CCeEEEEEcCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGS-LDGKLIIWDTW-TGNK--TQVIPLRSAWVMSVAFAQSGNFVACGGM-DNMCTVYDLNNRD 1767 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS-~DGtIrVWDl~-Tgk~--l~ti~~Ht~~ItsLafSPdg~~LaSGS~-DGtIrVWDl~t~~ 1767 (2004)
+....++++|++++|++++ .++.|.+|++. +++. ..... ..+....++|+|+++++++++. ++.|.+|+++...
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 3455789999999887664 57889999986 3433 22222 2345678999999998888764 7899999997432
Q ss_pred CCCcceEEEEEecCccceeeeEEeCCC-cEE-EeecCCeEEEEECCCCceeEE-----eeccccCCeEEEEECCCCCEEE
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFIDDT-TLL-TGSGDMKIVTWNLETGQRIHE-----VAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafsdd~-~Ll-SgS~DGtI~IWDl~tg~~i~~-----il~~h~~~ItsLafSPdg~~La 1840 (2004)
.. ........+ ......+.+.+++ .++ +...++.|.+||+.+...+.. ...........++|+|+|++++
T Consensus 114 ~~--~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly 190 (330)
T PRK11028 114 IP--VAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY 190 (330)
T ss_pred CC--CCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence 11 112222222 2234556666554 454 455679999999986432211 1111234467899999999998
Q ss_pred EEEC-CCeEEEEECCC--C--eEEEEEecC------CCCeEEEEEeCCCCEEEEEEC-CCeEEEEEccCCceeEEEc-CC
Q psy8748 1841 TGSV-DKSCKLWDFRE--K--KCVQTFFGH------EADVNSVCFHPSGLAFATGSE-DKTARLFDIRADQQIATYL-PP 1907 (2004)
Q Consensus 1841 SGS~-DGsIrIWDlrs--~--k~I~tl~~h------~s~ItsIafSPdg~~LaSgS~-DGtIrIWDLrtgk~i~t~~-~~ 1907 (2004)
++.. ++.|.+||++. + +.+..+... ......+.++|++++++++.. ++.|.+|++.......++. ..
T Consensus 191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~ 270 (330)
T PRK11028 191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ 270 (330)
T ss_pred EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE
Confidence 8876 89999999973 2 223333221 112346889999999998864 6889999986543211111 00
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECC
Q psy8748 1908 NKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLL 1940 (2004)
Q Consensus 1908 ~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~ 1940 (2004)
........+.++|+|++|+++.. +++|.+|++.
T Consensus 271 ~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 271 PTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 11123457899999999998775 8999999874
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-14 Score=172.81 Aligned_cols=261 Identities=16% Similarity=0.238 Sum_probs=196.0
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
..|-+.|+++.|+|..--|++ ++.||++++|.++. . ..
T Consensus 291 ~s~~d~ir~l~~~~sep~lit-~sed~~lk~WnLqk--------------------~--------------------~~- 328 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLIT-ASEDGTLKLWNLQK--------------------A--------------------KK- 328 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEE-eccccchhhhhhcc--------------------c--------------------CC-
Confidence 448889999999999999999 99999999999844 0 00
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
......+++.++++|.++|.|+++++++..+++||
T Consensus 329 ---------------------------------------------s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 329 ---------------------------------------------SAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred ---------------------------------------------ccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 00123457889999999999999999999999999
Q ss_pred CCCeEEEEECC------CC----ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC
Q psy8748 1712 LDGKLIIWDTW------TG----NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY 1781 (2004)
Q Consensus 1712 ~DGtIrVWDl~------Tg----k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh 1781 (2004)
-||+|+.|++. +. .....+.+|++.|+.+++++....|++++.||+++.|+...... +.......
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-----~~f~~~~e 438 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-----CTFGEPKE 438 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-----cccCCccc
Confidence 99999999553 11 23456789999999999999999999999999999999865432 11111112
Q ss_pred ccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEeec------cccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1782 EGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEVAQ------AHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1782 ~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~il~------~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
.+....+.+.... ..++...-+.-.++++..+.....+-. .....+.-+.++|.+.+.+++..|+.|+++|.
T Consensus 439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN 518 (577)
T ss_pred cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc
Confidence 2333344443322 223333333334444444443322210 11245677889999999999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEE
Q psy8748 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY 1904 (2004)
Q Consensus 1854 rs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~ 1904 (2004)
.++..+.....|...++++++.|+|.+|++++.||.+++|.+....++...
T Consensus 519 ~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 519 KTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred cccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 999999999999999999999999999999999999999998766655444
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-13 Score=159.42 Aligned_cols=289 Identities=21% Similarity=0.263 Sum_probs=197.0
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1550 APEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1550 a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
...+|.+.|+++.|+|+|+.||| |+++|+|.+|.... .+ . + +
T Consensus 60 ~Ls~H~~aVN~vRf~p~gelLAS-g~D~g~v~lWk~~~-------------~~-------------~-----~------~ 101 (434)
T KOG1009|consen 60 SLSRHTRAVNVVRFSPDGELLAS-GGDGGEVFLWKQGD-------------VR-------------I-----F------D 101 (434)
T ss_pred cccCCcceeEEEEEcCCcCeeee-cCCCceEEEEEecC-------------cC-------------C-----c------c
Confidence 34568999999999999999999 99999999999765 00 0 0 0
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVS 1709 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LAS 1709 (2004)
... .....+-.|...+.+.+|...|..++|+||+.++++
T Consensus 102 ~d~-----------------------------------------e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 102 ADT-----------------------------------------EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred ccc-----------------------------------------hhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 000 000011235567789999999999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccce-eee
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL-SSC 1788 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~V-ssv 1788 (2004)
|+-|..+++||+..|.....+..|...+..++|.|-++++++-+.|...+.+.+.... ....+...+ ..-
T Consensus 141 ~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~---------~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ---------VIKRHGLDIMPAK 211 (434)
T ss_pred eeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeee---------eeeeeeeeEeeec
Confidence 9999999999999999999999999999999999999999999999877777664321 111111000 000
Q ss_pred EEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC----CC-----eEEEEECCC-CeE
Q psy8748 1789 RFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV----DK-----SCKLWDFRE-KKC 1858 (2004)
Q Consensus 1789 afsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~----DG-----sIrIWDlrs-~k~ 1858 (2004)
.+ ........+++.-++.+. -...++|+|+|..+++... +| ..++|+-.. .++
T Consensus 212 ~~-------~~~e~~s~rLfhDeTlks----------FFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP 274 (434)
T KOG1009|consen 212 AF-------NEREGKSTRLFHDETLKS----------FFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP 274 (434)
T ss_pred cc-------CCCCcceeeeeecCchhh----------hhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCc
Confidence 00 011122233443333222 2445788899988887532 12 234554332 233
Q ss_pred EEEEecCCCCeEEEEEeC------------------CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC
Q psy8748 1859 VQTFFGHEADVNSVCFHP------------------SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1859 I~tl~~h~s~ItsIafSP------------------dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP 1920 (2004)
...+.....+...+.|+| -+-.++.++ ...|.+||.++-.+..... .-|...++.++|++
T Consensus 275 ~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~-nihy~~iTDiaws~ 352 (434)
T KOG1009|consen 275 AARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVD-NIHYSAITDIAWSD 352 (434)
T ss_pred eeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEe-eeeeeeecceeecC
Confidence 444555555555555554 223455665 5579999998877766553 34567899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1921 SGRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1921 dG~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
||.+++..+.||...+..++.++.-
T Consensus 353 dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 353 DGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred CCcEEEEeccCCceEEEEEcchhcc
Confidence 9999999999998888777665543
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-12 Score=145.48 Aligned_cols=240 Identities=18% Similarity=0.284 Sum_probs=181.7
Q ss_pred ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC----CcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECC
Q psy8748 1736 WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST----GAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLE 1811 (2004)
Q Consensus 1736 ~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~----~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~ 1811 (2004)
.|.+-+|+|.+++|++|..+|.|.+..+...... .....+....+|++++..++|.+ ..+++|+ ||.|+-|..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-DFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-hheeecc-CceEEEeeeh
Confidence 3556688999999999999999999998753221 12233445588999999999983 3455554 4999999765
Q ss_pred CCce------eEE-eec-----cccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCC
Q psy8748 1812 TGQR------IHE-VAQ-----AHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL 1879 (2004)
Q Consensus 1812 tg~~------i~~-il~-----~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~ 1879 (2004)
.... ..+ ... ..-..|.++...|..+-++.++.|+.++.||+++|+..+++++|.+.|.++.--....
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 4321 000 011 1234688999999888777777899999999999999999999999999999866666
Q ss_pred EEEEEECCCeEEEEEccCCceeEEEcCCCC--------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC
Q psy8748 1880 AFATGSEDKTARLFDIRADQQIATYLPPNK--------NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951 (2004)
Q Consensus 1880 ~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~--------~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH 1951 (2004)
.+++|++||++++||.++++.+..+....+ ...|-+ ..-+..++++|+. -.+.+|+++..++...+. -
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~edWlvCGgG-p~lslwhLrsse~t~vfp-i 245 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-I 245 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE--EeccCceEEecCC-CceeEEeccCCCceEEEe-c
Confidence 799999999999999999999888744332 223444 4446678888754 469999999988887775 3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1952 ENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1952 s~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
..+|..+.|.. +.++++|..+.|.-|.+.+
T Consensus 246 pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 246 PARVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ccceeEeeeec--ceEEEeccccceeeeeecc
Confidence 56788888854 4688888888899998876
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.7e-13 Score=153.13 Aligned_cols=295 Identities=17% Similarity=0.186 Sum_probs=213.5
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
...|.+.|+++.||-+|+|||+ |++|..+++|.+.. +. .. .
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~S-GGDD~~~~~W~~de---~~----------------------~~-k------------ 92 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLAS-GGDDMHGRVWNVDE---LM----------------------VR-K------------ 92 (609)
T ss_pred hhhhccccceeeeccCCeEEee-cCCcceeeeechHH---HH----------------------hh-c------------
Confidence 3459999999999999999999 99999999999977 00 00 0
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccc-cccccceeEEEEeCCCCEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSL-KGHINKVNSVHYSGDSRHCVS 1709 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL-~GHt~~VtsLaFSPDG~~LAS 1709 (2004)
. .+|+... ..|...|.|++|....+++.+
T Consensus 93 -------------------------------------------~-------~KPI~~~~~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 93 -------------------------------------------T-------PKPIGVMEHPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred -------------------------------------------C-------CCCceeccCccccceEEEEEccCCeeEec
Confidence 0 0011111 136789999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEeeC--CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceee
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPL--RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~--Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vss 1787 (2004)
|+.+|+|...|+++.+.+..+.. ..+.|+.+..+|..+.+++.+.+|.|.+||......... . ............
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~--~-~~~AN~~~~F~t 199 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS--L-VLPANSGKNFYT 199 (609)
T ss_pred CCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc--e-eeecCCCcccee
Confidence 99999999999999988887753 346899999999999999999999999999976432211 1 112233455666
Q ss_pred eEEeCC--CcEEEeecCCeEEEEECCCCceeEEe---ecccc---CCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE-
Q psy8748 1788 CRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEV---AQAHI---GDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC- 1858 (2004)
Q Consensus 1788 vafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~i---l~~h~---~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~- 1858 (2004)
+.|.+. ..+++.+..|.+-+||++..+..... ..+.. ..-.+..|+|.|+.|.+--....-.+||+.+..+
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~ 279 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF 279 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence 677754 45788888999999999865432111 11222 2236788999999998877766777888877544
Q ss_pred EEEEecCC-------CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce------eE---------------EEcCCCCC
Q psy8748 1859 VQTFFGHE-------ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ------IA---------------TYLPPNKN 1910 (2004)
Q Consensus 1859 I~tl~~h~-------s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~------i~---------------t~~~~~~~ 1910 (2004)
+..+ .|. ..+.+++|..+- .+++|+.+-.|++|.+..... +. .....+|.
T Consensus 280 V~k~-D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHR 357 (609)
T KOG4227|consen 280 VLKS-DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHR 357 (609)
T ss_pred eEec-cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccc
Confidence 3333 222 245677777554 499999999999998742111 00 01224667
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1911 SGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
..+..+.|+|...+|++.+-.+.+++|.-
T Consensus 358 Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 358 SVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccccceeecCCcceEeccchhhheecccc
Confidence 77889999999999999999999999974
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-12 Score=162.59 Aligned_cols=243 Identities=17% Similarity=0.245 Sum_probs=170.6
Q ss_pred cceeEEEEeC--CCCEEEEEeCCCeEEEEEC-CCC----ceEEEeeC-------CCCceEEEEEecCCCEEEEeecCCeE
Q psy8748 1693 NKVNSVHYSG--DSRHCVSGSLDGKLIIWDT-WTG----NKTQVIPL-------RSAWVMSVAFAQSGNFVACGGMDNMC 1758 (2004)
Q Consensus 1693 ~~VtsLaFSP--DG~~LASGS~DGtIrVWDl-~Tg----k~l~ti~~-------Ht~~ItsLafSPdg~~LaSGS~DGtI 1758 (2004)
..|+.+.+-. |...+++|+.||.|+||+- .++ +.+..+.+ ..+.-.-+.|.....+|+++|.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 3566777653 4558999999999999953 222 22322211 11212445787777777777778899
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEe--CCCcEEEeecCCeEEEEECCCCce--eEEeeccccCC--eEEEEE
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQR--IHEVAQAHIGD--VVSISL 1832 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~~--i~~il~~h~~~--ItsLaf 1832 (2004)
+|||..... .......+....++++.-. .++.+++|..||.|++||.+.... .....+.|... |..+.+
T Consensus 1190 RIWDa~~E~-----~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1190 RIWDAHKEQ-----VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred EEEecccce-----eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence 999997532 2222223344455555443 467899999999999999986543 44556677776 999999
Q ss_pred CCCCC-EEEEEECCCeEEEEECCCCeE--EEEEecC---CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC
Q psy8748 1833 SPDGQ-YFVTGSVDKSCKLWDFREKKC--VQTFFGH---EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1833 SPdg~-~LaSGS~DGsIrIWDlrs~k~--I~tl~~h---~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
.+.|- .+++|+.||.|++||++.... ..++..| ++..+++..++....+++|+. +.|.||++... .+..+..
T Consensus 1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~ 1342 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKY 1342 (1387)
T ss_pred ecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhccccc
Confidence 98665 599999999999999997422 1222233 235899999999999999987 99999998743 3222211
Q ss_pred -----CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q psy8748 1907 -----PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942 (2004)
Q Consensus 1907 -----~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg 1942 (2004)
....+.+.|++|+|..-.+|+|+.|.+|.||...+.
T Consensus 1343 n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1343 NPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred CcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 123456799999999999999999999999987554
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-13 Score=149.98 Aligned_cols=290 Identities=19% Similarity=0.199 Sum_probs=193.1
Q ss_pred CCCCCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccc
Q psy8748 1547 PTNAPEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLM 1626 (2004)
Q Consensus 1547 pt~a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll 1626 (2004)
|-.+.++|...|+|+.|..+++ |.+ |..-|.|++|++++ .+....|++
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~s-g~~~G~V~~w~lqt-------------~r~~~~~r~----------------- 53 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMS-GLSVGIVKMWVLQT-------------ERDLPLIRL----------------- 53 (323)
T ss_pred CeeEeccccchheehhhccchh-hhc-ccccceEEEEEeec-------------Cccchhhhh-----------------
Confidence 4445557888999999999987 667 99999999999988 221111111
Q ss_pred cCCCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCE
Q psy8748 1627 MKPTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRH 1706 (2004)
Q Consensus 1627 ~spdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~ 1706 (2004)
.|+..|+.+.--|+ ..
T Consensus 54 ---------------------------------------------------------------~g~~~it~lq~~p~-d~ 69 (323)
T KOG0322|consen 54 ---------------------------------------------------------------FGRLFITNLQSIPN-DS 69 (323)
T ss_pred ---------------------------------------------------------------hccceeeceeecCC-cc
Confidence 25566777777776 56
Q ss_pred EEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecC-----CC---EEEEeecCCe--EEEEEcCCCCCCCcceEEE
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQS-----GN---FVACGGMDNM--CTVYDLNNRDSTGAAKVIR 1776 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPd-----g~---~LaSGS~DGt--IrVWDl~t~~~~~~~k~i~ 1776 (2004)
+.+-+.|+.+.+|++.-+..+.. |.-.+.++.|++. ++ .++..-..|. +.+-|. +......-...
T Consensus 70 l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~--g~~tqv~i~dd 144 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG--GDTTQVQIADD 144 (323)
T ss_pred hhhcCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhcc--CccceeEccCc
Confidence 88888999999999877554432 3333444444421 11 1111111110 011110 00000000000
Q ss_pred EEecCccceeeeEEe--CCC--cEEEeecCCeEEEEECCCCceeEEe---------eccccCCeEEEEECCCCCEEEEEE
Q psy8748 1777 ELLGYEGFLSSCRFI--DDT--TLLTGSGDMKIVTWNLETGQRIHEV---------AQAHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1777 sl~gh~~~Vssvafs--dd~--~LlSgS~DGtI~IWDl~tg~~i~~i---------l~~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
...+..+.+.+..+. .+. .+++|.++|.+.+||+.++..+..+ ...|..+|.++.+.+....=++|+
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg 224 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG 224 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC
Confidence 111223444444432 222 3778889999999999997443222 356889999999988666667888
Q ss_pred CCCeEEEEECCCC--eE--EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEc
Q psy8748 1844 VDKSCKLWDFREK--KC--VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVS 1919 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~--k~--I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafS 1919 (2004)
.+..+..|.+... .. -....-.+..|..+.+-||++.+++++.||+|+||+.++...+..+. .|...|.+++|+
T Consensus 225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk--yHsagvn~vAfs 302 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK--YHSAGVNAVAFS 302 (323)
T ss_pred ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh--hhhcceeEEEeC
Confidence 8888999987643 21 12222334568889999999999999999999999999999988774 455889999999
Q ss_pred CCCCEEEEEeCCCeEEEEEC
Q psy8748 1920 SSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1920 PdG~~LaSGSsDGsIrIWDL 1939 (2004)
|+...+|+++.|++|.+|++
T Consensus 303 pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 PDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCchhhhccCCceEEeeec
Confidence 99999999999999999986
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-12 Score=146.58 Aligned_cols=208 Identities=16% Similarity=0.218 Sum_probs=170.1
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG---NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg---k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
.--..+|+|.+|++|++.+|.+.....|.||..... +..++++.|...|++++|+|..+.|++|+.|..-++|....
T Consensus 7 ~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred eeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 334579999999999999999999999999986654 46778899999999999999999999999999999999854
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCcee---EEeeccccCCeEEEEECCCCCEEEE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRI---HEVAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i---~~il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
+. ..+....+..+....+++.|++. +.|++|+....|.+|-++....- +.+.+.+...|+++.|+|++-++++
T Consensus 87 ~~---~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 87 GG---TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CC---eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 32 55566667778889999999964 56999999999999987654321 2334567788999999999999999
Q ss_pred EECCCeEEEEECC-----C-------------CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc
Q psy8748 1842 GSVDKSCKLWDFR-----E-------------KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ 1899 (2004)
Q Consensus 1842 GS~DGsIrIWDlr-----s-------------~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk 1899 (2004)
|+.|+..+++..- . |+.+..+....+.+..+.|+|+|+.|+-.+.|+.+.+-|.....
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999998631 1 22333444566789999999999999999999999999977654
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=154.07 Aligned_cols=208 Identities=20% Similarity=0.262 Sum_probs=165.8
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
..++.++.||.+.+.+ +.|+....+..|.+.|.+-.|+|+|.-|+++|.||.|++|.-.. -...++......
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-------MLRStl~Q~~~~ 147 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-------MLRSTVVQNEES 147 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-------hHHHHHhhcCce
Confidence 4678888899999987 67888888999999999999999999999999999999998643 222234445678
Q ss_pred eeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEec
Q psy8748 1785 LSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG 1864 (2004)
Q Consensus 1785 Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~ 1864 (2004)
|.|++|.++..-+.-+..+.+.+=-+.....+ ...+.|.+-|.++.|++..+.+++|+.|-..++||- .|..+..-..
T Consensus 148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~-i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~ 225 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKI-IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAA 225 (737)
T ss_pred eEEEEECCCCCceEEecCCeEEEeecccccce-eEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCCh
Confidence 99999997765444455567777666555544 335789999999999999999999999999999996 4666667778
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy8748 1865 HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVW 1937 (2004)
Q Consensus 1865 h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIW 1937 (2004)
|+.+|++++|.|+ ..++.|+.+ +.+ +. ....+.|..++|++||..+++|+..|.+.+=
T Consensus 226 ~ey~ITSva~npd-~~~~v~S~n-t~R------------~~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 226 EEYAITSVAFNPE-KDYLLWSYN-TAR------------FS-SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred hccceeeeeeccc-cceeeeeee-eee------------ec-CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 9999999999999 667777642 333 22 2344678999999999999999999987653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-11 Score=146.86 Aligned_cols=297 Identities=15% Similarity=0.173 Sum_probs=192.5
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee-cCCeEEEEEc
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG-MDNMCTVYDL 1763 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS-~DGtIrVWDl 1763 (2004)
+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.+++.... ..++++++||+++++++ ..+.+.++|.
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEecc
Confidence 445554434444578999999999999999999999999999999986554 67899999999998775 5799999998
Q ss_pred CCCCCCCcceEEEEEec-------CccceeeeEEeCCCc-EEEe-ecCCeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1764 NNRDSTGAAKVIRELLG-------YEGFLSSCRFIDDTT-LLTG-SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~g-------h~~~Vssvafsdd~~-LlSg-S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
++.+ .++.+.. ....+..+..++... ++.. -+.+.|.+.|....+.................|+|
T Consensus 108 ~tle------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 108 ETLE------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP 181 (369)
T ss_dssp TT--------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred cccc------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc
Confidence 7653 3333222 233455565554443 4444 44589999998776544333334455677899999
Q ss_pred CCCEEEEE-ECCCeEEEEECCCCeEEEEEec----CCCCeEEE-------EEeC--CCCEEEEEECCCeEEEEEccCCce
Q psy8748 1835 DGQYFVTG-SVDKSCKLWDFREKKCVQTFFG----HEADVNSV-------CFHP--SGLAFATGSEDKTARLFDIRADQQ 1900 (2004)
Q Consensus 1835 dg~~LaSG-S~DGsIrIWDlrs~k~I~tl~~----h~s~ItsI-------afSP--dg~~LaSgS~DGtIrIWDLrtgk~ 1900 (2004)
++++++++ ..++.|.++|..+++.+..+.. |..++..+ .|.. .+...++.-..+.+.+||..+++.
T Consensus 182 dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence 99988775 4567899999999887766532 33333332 1211 222222222334567889999999
Q ss_pred eEEEcCCCCCCCeEEEEEcCCCCEEEEE----eCCCeEEEEECCCCeeeEEEccC-CCCeEEEEEcCCCCEEEEEECC--
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSSGRYIFCG----SDDNNVHVWDLLKTTHNGVLSGH-ENRVTSISLSPNGMALVTSSWD-- 1973 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPdG~~LaSG----SsDGsIrIWDL~tge~l~tL~gH-s~~VtsLaFSPDg~~LaSgS~D-- 1973 (2004)
+.++...+ .+ ..+..+|+++++.+. ...++|.++|.++.+....+... ...+..+.|+++|+.+..+.+|
T Consensus 262 v~~I~~~G--~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 262 VKTIPTQG--GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp EEEEE-SS--SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred EEEEECCC--Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 98886543 34 778899999999998 44589999999999888877532 3469999999999987666554
Q ss_pred CeEEEEECCCCeEEEEEE
Q psy8748 1974 QFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1974 GtIrIWdlstg~l~k~Ik 1991 (2004)
|.|.+||..+.+..+.+.
T Consensus 339 ~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 339 GAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TEEEEEETTTTEEEEEEE
T ss_pred CEEEEEECCCcEEEEEEE
Confidence 469999999998888877
|
... |
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-12 Score=154.11 Aligned_cols=262 Identities=16% Similarity=0.195 Sum_probs=189.3
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEE-ec-------CCCEEEEeecCCeEEEE
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF-AQ-------SGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLaf-SP-------dg~~LaSGS~DGtIrVW 1761 (2004)
.|...|.|+.|+.+...+.+++ |..+.+|.-.+.............|....+ -+ ....++.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4777888999998887666665 455555543333332222222222221111 11 23478888999999888
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
+-. .+..+....|.+.+.+-.|++++ -+++++.||.|++|.-... . .........+|.|++|.|+.+.++
T Consensus 91 ~k~-------~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-L-RStl~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 91 NKS-------ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-L-RSTVVQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred ccc-------chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-H-HHHHhhcCceeEEEEECCCCCceE
Confidence 653 34556677899999999998655 5999999999999985432 2 123334567899999999877665
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC
Q psy8748 1841 TGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1841 SGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP 1920 (2004)
.+- .|.+.|=.+.....+..+++|.+-|.++.|++..+.+++|++|-+.++||-. |..+. ....|..+|++++|.|
T Consensus 162 ~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf--~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 162 FCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLF--TSAAEEYAITSVAFNP 237 (737)
T ss_pred Eec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Ccccc--cCChhccceeeeeecc
Confidence 543 4677887777777788899999999999999999999999999999999965 44443 3356778999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q psy8748 1921 SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKV 1978 (2004)
Q Consensus 1921 dG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrI 1978 (2004)
+ ..++.|+.+ +.+ --+...+.|..++|++||..++.|...|.+.+
T Consensus 238 d-~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 238 E-KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred c-cceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 9 666666543 344 11345688999999999999999999887765
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-12 Score=153.61 Aligned_cols=191 Identities=20% Similarity=0.316 Sum_probs=149.3
Q ss_pred cEEEeecCCeEEEEECCCCceeEEe---eccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCC--------------C
Q psy8748 1795 TLLTGSGDMKIVTWNLETGQRIHEV---AQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFRE--------------K 1856 (2004)
Q Consensus 1795 ~LlSgS~DGtI~IWDl~tg~~i~~i---l~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs--------------~ 1856 (2004)
.+++|-.-|.|+++|....+....+ ..-.+..++|+.|-| +...|+++-.+|.+++||..- +
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 4889999999999998663221111 112346799999999 445777888899999997531 1
Q ss_pred --------------eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1857 --------------KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1857 --------------k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
.++..+.-..+.|..++|+|||++|++.+.||.++|||..+.+..... ...-+...|++|+|||
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m--kSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM--KSYFGGLLCVCWSPDG 344 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH--HhhccceEEEEEcCCc
Confidence 112222223457889999999999999999999999999887765544 2334679999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCC-----------------------------------C---
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPN-----------------------------------G--- 1964 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPD-----------------------------------g--- 1964 (2004)
+||++|++|--|.||.+...+.+..-.+|...|+.|+|.|- +
T Consensus 345 KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~ 424 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPL 424 (636)
T ss_pred cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcc
Confidence 99999999999999999999999999999999999999830 1
Q ss_pred ----------CEEEEEECCCeEEEEECCCCeEE
Q psy8748 1965 ----------MALVTSSWDQFVKVWQESNTIVW 1987 (2004)
Q Consensus 1965 ----------~~LaSgS~DGtIrIWdlstg~l~ 1987 (2004)
-.+.+.|.|-.+++||+....+.
T Consensus 425 s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 425 SSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred cccccccceEEEeecccccceEEEEecchhhcc
Confidence 14778899999999999987543
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=141.23 Aligned_cols=246 Identities=18% Similarity=0.290 Sum_probs=181.4
Q ss_pred CceEEEEEec--C-CCEEEEeec----CCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-----EEEeecC
Q psy8748 1735 AWVMSVAFAQ--S-GNFVACGGM----DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-----LLTGSGD 1802 (2004)
Q Consensus 1735 ~~ItsLafSP--d-g~~LaSGS~----DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-----LlSgS~D 1802 (2004)
-.+.++.|+. + +.+++.|+. .+.|.+..++... .+ ........|.-+++.+.|.++.. +++ +.+
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s--~e-~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLA-Ts~ 120 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDS--GE-LVEDANFDHPYPVTKLMWIPDSKGVYPDLLA-TSS 120 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCC--Cc-eeccCCCCCCCCccceEecCCccccCcchhh-ccc
Confidence 4578888874 2 346777764 3567777665321 11 11122256778888999986652 333 344
Q ss_pred CeEEEEECCCCc--eeE------EeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeE---EEEEecCCCCeE
Q psy8748 1803 MKIVTWNLETGQ--RIH------EVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKC---VQTFFGHEADVN 1870 (2004)
Q Consensus 1803 GtI~IWDl~tg~--~i~------~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~---I~tl~~h~s~It 1870 (2004)
..+++|.+.... ... .....+..++++..|+. +.+++.+++-|.+..|||+.++.. ...+.+|..+|.
T Consensus 121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~ 200 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY 200 (364)
T ss_pred CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence 579999987422 111 11234667899999987 778999999999999999998633 455679999999
Q ss_pred EEEEeCCC-CEEEEEECCCeEEEEEccCCceeEEEc-CCCCCCCeEEEEEcC-CCCEEEEEeCC-CeEEEEECCC-Ceee
Q psy8748 1871 SVCFHPSG-LAFATGSEDKTARLFDIRADQQIATYL-PPNKNSGFTSCAVSS-SGRYIFCGSDD-NNVHVWDLLK-TTHN 1945 (2004)
Q Consensus 1871 sIafSPdg-~~LaSgS~DGtIrIWDLrtgk~i~t~~-~~~~~s~ItsLafSP-dG~~LaSGSsD-GsIrIWDL~t-ge~l 1945 (2004)
.|+|...+ +.|++.+.||.||+||++.......+. .+....+...++|++ |-+++|+-..| ..|.|.|++. ..++
T Consensus 201 DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 201 DIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV 280 (364)
T ss_pred EEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce
Confidence 99999855 478999999999999999766544443 333357788999998 55777765554 5699999986 5678
Q ss_pred EEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC
Q psy8748 1946 GVLSGHENRVTSISLSPN-GMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1946 ~tL~gHs~~VtsLaFSPD-g~~LaSgS~DGtIrIWdlstg 1984 (2004)
..+++|.+.|++++|.|. +..|++||+|..+-+||+...
T Consensus 281 a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 281 ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred ehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 899999999999999995 568999999999999999753
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-11 Score=141.34 Aligned_cols=237 Identities=14% Similarity=0.173 Sum_probs=177.9
Q ss_pred CCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEe-ecCCeEEEEECCC
Q psy8748 1734 SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTG-SGDMKIVTWNLET 1812 (2004)
Q Consensus 1734 t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSg-S~DGtI~IWDl~t 1812 (2004)
...+..+.|..+...|..|+.|| -++|..+... + ..........|.-+-|+..-..+++ ...+.+++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~-----k-~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFE-----K-CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchH-----H-hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEccc
Confidence 34577778999999999999999 6888776432 1 1111112233444444433332222 2235699999998
Q ss_pred CceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecC---CCCeEEEEEeCCCCEEEEEE--CC
Q psy8748 1813 GQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH---EADVNSVCFHPSGLAFATGS--ED 1887 (2004)
Q Consensus 1813 g~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h---~s~ItsIafSPdg~~LaSgS--~D 1887 (2004)
+..+..+. ....|.++.++. +.+++.-.+ .|+|||+++.+.+.++... ...+.++.+++.+.+++.-+ ..
T Consensus 78 ~~~ICe~~--fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 78 KTTICEIF--FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred CceEEEEe--cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 88877764 455688998874 456665544 5999999999988887543 34466666666677887643 36
Q ss_pred CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeeeEEEccC--CCCeEEEEEcCCC
Q psy8748 1888 KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNN-VHVWDLLKTTHNGVLSGH--ENRVTSISLSPNG 1964 (2004)
Q Consensus 1888 GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGs-IrIWDL~tge~l~tL~gH--s~~VtsLaFSPDg 1964 (2004)
|.|.+||..+-+....+ ..|.+.+.+++|+++|.+||++++.|+ ||||.+.+|+.+..++-. ...|.+++|++++
T Consensus 153 GdV~l~d~~nl~~v~~I--~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTI--NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred ceEEEEEcccceeeeEE--EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 89999999998888888 478899999999999999999999997 799999999999998632 3468999999999
Q ss_pred CEEEEEECCCeEEEEECCCC
Q psy8748 1965 MALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1965 ~~LaSgS~DGtIrIWdlstg 1984 (2004)
.+|++.|..++|++|+++..
T Consensus 231 ~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CeEEEecCCCeEEEEEeccc
Confidence 99999999999999999875
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.6e-12 Score=158.36 Aligned_cols=233 Identities=20% Similarity=0.158 Sum_probs=164.1
Q ss_pred CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC---CeEEEEEcCCCCCCCcceEEEEEecCccceeeeE
Q psy8748 1713 DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD---NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR 1789 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D---GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssva 1789 (2004)
++.|++||..... .+.+..|...+.+..|+|||+.++.++.+ ..|++||+.++. ...+....+ ......
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~----~~~l~~~~g---~~~~~~ 254 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA----RKVVASFRG---HNGAPA 254 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc----eEEEecCCC---ccCcee
Confidence 5789999975444 55667788889999999999999887654 479999997642 122222222 334678
Q ss_pred EeCCC-cEEEe-ecCCeE--EEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCCC-eEEEEEe
Q psy8748 1790 FIDDT-TLLTG-SGDMKI--VTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFREK-KCVQTFF 1863 (2004)
Q Consensus 1790 fsdd~-~LlSg-S~DGtI--~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~-k~I~tl~ 1863 (2004)
|++++ .++.+ +.+|.+ ++||+.++... . ...+...+....|+|||+.++.++ .+|...||+++.. .....+
T Consensus 255 wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l- 331 (429)
T PRK01742 255 FSPDGSRLAFASSKDGVLNIYVMGANGGTPS-Q-LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV- 331 (429)
T ss_pred ECCCCCEEEEEEecCCcEEEEEEECCCCCeE-e-eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-
Confidence 88665 45554 457765 45576666543 2 335566788999999999877655 5788888876432 222222
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC--CC
Q psy8748 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL--LK 1941 (2004)
Q Consensus 1864 ~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL--~t 1941 (2004)
.+.. .+..|+|+|+++++++.++ +.+||+.+++...... .. ....+.|+|+|++|+.++.+|.+.+|++ .+
T Consensus 332 ~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~ 404 (429)
T PRK01742 332 GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD 404 (429)
T ss_pred cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CC---CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 3333 4578999999998887765 6669998887543221 11 2346789999999999999998888875 46
Q ss_pred CeeeEEEccCCCCeEEEEEcCC
Q psy8748 1942 TTHNGVLSGHENRVTSISLSPN 1963 (2004)
Q Consensus 1942 ge~l~tL~gHs~~VtsLaFSPD 1963 (2004)
|.....+.+|.+.+...+|+|-
T Consensus 405 G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 405 GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceEEccCCCCCCCCcccCCC
Confidence 8888888889999999999984
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-11 Score=138.87 Aligned_cols=272 Identities=19% Similarity=0.254 Sum_probs=182.9
Q ss_pred ceeEEEEeCCCCEEEE-EeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1694 KVNSVHYSGDSRHCVS-GSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LAS-GS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
.|.-+.|..|.-+++. ...|+.|.+|++...+-...+....+++.+++|+|||+ .+.+...+-.|.||.+.+..
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~---- 125 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK---- 125 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce----
Confidence 4446677777776554 56688999999999998888988889999999999996 55667778999999997642
Q ss_pred ceEEEEEecCccceeeeEEeCCCcEEEeecCCeE-EEEECCC---CceeEEeeccccCCeEEEEECCCCCEEEEEECCCe
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKI-VTWNLET---GQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI-~IWDl~t---g~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGs 1847 (2004)
..-+.-....+..++|.+++++.+-...... ..+.+.. -..+ +.+.-..-..+.+.|+|||+.+++
T Consensus 126 ---~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll-~~f~~dT~DltgieWsPdg~~laV------ 195 (447)
T KOG4497|consen 126 ---GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILL-KEFKLDTIDLTGIEWSPDGNWLAV------ 195 (447)
T ss_pred ---eEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHH-HhcCCCcccccCceECCCCcEEEE------
Confidence 1222233445577888877776554332211 1111111 0111 112233445788999999887765
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEE-----------------------
Q psy8748 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY----------------------- 1904 (2004)
Q Consensus 1848 IrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~----------------------- 1904 (2004)
||.--.-.+..+ ...-.+..+.|+|.++++++|+.|+.+++.+--+.+....+
T Consensus 196 ---wd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q 271 (447)
T KOG4497|consen 196 ---WDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ 271 (447)
T ss_pred ---ecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence 332111111111 12345778899999999999999998888653222111110
Q ss_pred -------------------------------------c----CCCCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECCC
Q psy8748 1905 -------------------------------------L----PPNKNSGFTSCAVSSSGRYIFCGSDD--NNVHVWDLLK 1941 (2004)
Q Consensus 1905 -------------------------------------~----~~~~~s~ItsLafSPdG~~LaSGSsD--GsIrIWDL~t 1941 (2004)
. .++...++.-++|++|..|+++-.+. +.+.+||+++
T Consensus 272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~ 351 (447)
T KOG4497|consen 272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN 351 (447)
T ss_pred hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence 0 01123456678999999999987654 6799999988
Q ss_pred CeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1942 TTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1942 ge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
.+....+. ...+|....|+|....|+.+.....+++|...+.
T Consensus 352 l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 352 LKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred hhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence 77665554 5678999999999999999888888999998874
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.2e-12 Score=142.39 Aligned_cols=237 Identities=18% Similarity=0.247 Sum_probs=179.1
Q ss_pred ccccceeEEEEeCCCC-----EEEEEeCCCeEEEEECCCC--ceE--EE-----eeCCCCceEEEEEec-CCCEEEEeec
Q psy8748 1690 GHINKVNSVHYSGDSR-----HCVSGSLDGKLIIWDTWTG--NKT--QV-----IPLRSAWVMSVAFAQ-SGNFVACGGM 1754 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~-----~LASGS~DGtIrVWDl~Tg--k~l--~t-----i~~Ht~~ItsLafSP-dg~~LaSGS~ 1754 (2004)
.|.-+++.+.|.|+.. +|||++ ..+|+|.+... +.. .. -..+.+++++..|+. +.+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 4888999999999773 566665 37999988742 211 11 123567899999987 6789999999
Q ss_pred CCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEeeccc--cCCeEEE
Q psy8748 1755 DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQAH--IGDVVSI 1830 (2004)
Q Consensus 1755 DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~~h--~~~ItsL 1830 (2004)
|-+..|||++.+. .+.....+..|...|..++|..+ +.|++.+.||.|++||++..+....+.... ..+...+
T Consensus 172 DTTCTiWdie~~~---~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 172 DTTCTIWDIETGV---SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL 248 (364)
T ss_pred cCeEEEEEEeecc---ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence 9999999998752 34566778899999999999974 459999999999999999876553443322 4567889
Q ss_pred EECC-CCCEEEEEECC-CeEEEEECCCC-eEEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccCCceeEE---
Q psy8748 1831 SLSP-DGQYFVTGSVD-KSCKLWDFREK-KCVQTFFGHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRADQQIAT--- 1903 (2004)
Q Consensus 1831 afSP-dg~~LaSGS~D-GsIrIWDlrs~-k~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~i~t--- 1903 (2004)
+|++ |-+++++-..| ..|.|.|++.. .++..+.+|.+.|++|+|.| .+..+++++.|..+.+||+.+.-....
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 9988 45677776555 46999999864 56888999999999999999 456899999999999999975322000
Q ss_pred EcCCCCCCCeEEEEEcC-CCCEEEEEeCC
Q psy8748 1904 YLPPNKNSGFTSCAVSS-SGRYIFCGSDD 1931 (2004)
Q Consensus 1904 ~~~~~~~s~ItsLafSP-dG~~LaSGSsD 1931 (2004)
+..-.....|..+.|++ .+.+++++...
T Consensus 329 ilay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 329 ILAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hhhhhccceeeeeeecccCCCEEEEEecC
Confidence 01112346799999996 67788887543
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-11 Score=146.39 Aligned_cols=197 Identities=22% Similarity=0.287 Sum_probs=153.9
Q ss_pred eeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEec
Q psy8748 1786 SSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG 1864 (2004)
Q Consensus 1786 ssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~ 1864 (2004)
.+++|+. +..+++|+.||.+++|+..+...+.. ...|.+.|.++.|+|||+.|++.+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~-e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE-EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh-hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 5677774 47799999999999999776665533 35788999999999999999999999 899999999977666542
Q ss_pred --CCCCeEEEEEeCCC---CE--EEEEECCCeEEEEEccCCce---eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q psy8748 1865 --HEADVNSVCFHPSG---LA--FATGSEDKTARLFDIRADQQ---IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNV 1934 (2004)
Q Consensus 1865 --h~s~ItsIafSPdg---~~--LaSgS~DGtIrIWDLrtgk~---i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsI 1934 (2004)
.......+.|+.++ .+ ++.....+.|+.||+...+. ............|++++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23346677888776 22 33333456677777654332 1111222334579999999999999999999999
Q ss_pred EEEECCCCeeeEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1935 HVWDLLKTTHNGVL-SGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1935 rIWDL~tge~l~tL-~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
-|++..+.+.++.. +.|...|+.+.|+||.+++++.+.|..+.+..+.-.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 99999998888766 579999999999999999999999999999988763
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-11 Score=141.04 Aligned_cols=207 Identities=19% Similarity=0.216 Sum_probs=160.6
Q ss_pred ccccccc-ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCce-EEEee-----CCCCceEEEEEec--CCCEEEEee
Q psy8748 1683 MPKKSLK-GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK-TQVIP-----LRSAWVMSVAFAQ--SGNFVACGG 1753 (2004)
Q Consensus 1683 ~pi~sL~-GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~-l~ti~-----~Ht~~ItsLafSP--dg~~LaSGS 1753 (2004)
+.+..|. .|-+.|.|+.|.|++..+++-. |..|.+|++..+.. ...+. .+....++-+|+| +|+.+++.+
T Consensus 113 E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence 3344454 5667999999999999999876 78999999988766 33332 2455678889998 677777654
Q ss_pred cCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEE
Q psy8748 1754 MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSIS 1831 (2004)
Q Consensus 1754 ~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLa 1831 (2004)
|+++..||+++.. +.......|...+..+.|.++. .+++|+.||.|++||.+..+.......+|...|.++.
T Consensus 192 -d~tl~~~D~RT~~-----~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 192 -DSTLQFWDLRTMK-----KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred -CCcEEEEEccchh-----hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 7899999998643 2233345677889999998765 4889999999999999987776677789999999999
Q ss_pred ECCC-CCEEEEEECCCeEEEEECCC-----------------------------CeEEEEEecCCCCeEEEEEeCCCC-E
Q psy8748 1832 LSPD-GQYFVTGSVDKSCKLWDFRE-----------------------------KKCVQTFFGHEADVNSVCFHPSGL-A 1880 (2004)
Q Consensus 1832 fSPd-g~~LaSGS~DGsIrIWDlrs-----------------------------~k~I~tl~~h~s~ItsIafSPdg~-~ 1880 (2004)
|+|. .+++++|+.|..|.+|.... ...+.++..|++.|.+++|+.-.. .
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 9994 56888999999999996421 113456778999999999998555 4
Q ss_pred EEEEECCCeEEEEEcc
Q psy8748 1881 FATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1881 LaSgS~DGtIrIWDLr 1896 (2004)
|++-+.||++.|=.+.
T Consensus 346 FASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 346 FASLSYDGRVIISSVP 361 (370)
T ss_pred EEEeccCceEEeecCC
Confidence 7788999999886654
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-12 Score=154.97 Aligned_cols=243 Identities=18% Similarity=0.253 Sum_probs=174.4
Q ss_pred EecCCCEEEE--eecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe--CCCcEEEeecCCeEEEEECCCCce--
Q psy8748 1742 FAQSGNFVAC--GGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQR-- 1815 (2004)
Q Consensus 1742 fSPdg~~LaS--GS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~~-- 1815 (2004)
|+.+..++++ .+..|.|-||+++............ .-....|+.+.|. ++.+++++++||.|++|.+..+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~--l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPG--LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccc--cccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 4444555544 4567999999998754332222111 1234567888887 677899999999999999876532
Q ss_pred ----eEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeE
Q psy8748 1816 ----IHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTA 1890 (2004)
Q Consensus 1816 ----i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtI 1890 (2004)
...++..|...|+++.||| -.+.|++++.|-+|++||+++++....+.+|.+.|.+++|+|+|+.+++.+.||+|
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence 2345678999999999999 45688999999999999999999989999999999999999999999999999999
Q ss_pred EEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEECCCC--eeeEEEccCCC-CeEEEEEcCC
Q psy8748 1891 RLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN----NVHVWDLLKT--THNGVLSGHEN-RVTSISLSPN 1963 (2004)
Q Consensus 1891 rIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDG----sIrIWDL~tg--e~l~tL~gHs~-~VtsLaFSPD 1963 (2004)
++|+-+++.....-........-..+.|.-+|+++++.+.|. .|.+||..+- .++.+..-... .+.--.+.+|
T Consensus 745 rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~D 824 (1012)
T KOG1445|consen 745 RVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYD 824 (1012)
T ss_pred EEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCC
Confidence 999998776543332222234445678888999998877664 5888987543 23322211000 1111123344
Q ss_pred C-CEEEEEECCCeEEEEECCCCeE
Q psy8748 1964 G-MALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1964 g-~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
. -++++|-.|..|.+|.+-....
T Consensus 825 s~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 825 SNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred CceEEEecCCCceEEEEEecCCCc
Confidence 4 4577888899999999876543
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.9e-12 Score=146.60 Aligned_cols=207 Identities=17% Similarity=0.266 Sum_probs=165.5
Q ss_pred EEEecCccceeeeEEe--CCCcEEEeecCCeEEEEECCCCcee------EEeeccccCCeEEEEECCC-CCEEEEEECCC
Q psy8748 1776 RELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQRI------HEVAQAHIGDVVSISLSPD-GQYFVTGSVDK 1846 (2004)
Q Consensus 1776 ~sl~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~~i------~~il~~h~~~ItsLafSPd-g~~LaSGS~DG 1846 (2004)
....+|.+.+..+.|. ++..+++|+.|.+|.+|++..+... ...+.+|...|--++|||. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 3456899999999998 5667999999999999998765432 2346799999999999994 56889999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEE
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIF 1926 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~La 1926 (2004)
.|.+|++.+++.+.++. |.+.|.++.|+.||.++++.+.|.+|+|||.++++.+..-..+. +..-..+.|-.+|.++-
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he-G~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE-GAKPARAIFLASGKIFT 232 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc-CCCcceeEEeccCceee
Confidence 99999999999988886 99999999999999999999999999999999999988773322 23345566778888666
Q ss_pred EEe---CCCeEEEEECCCCeee---EEEccCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCe
Q psy8748 1927 CGS---DDNNVHVWDLLKTTHN---GVLSGHENRVTSISLSPNGMALVTSSW-DQFVKVWQESNTI 1985 (2004)
Q Consensus 1927 SGS---sDGsIrIWDL~tge~l---~tL~gHs~~VtsLaFSPDg~~LaSgS~-DGtIrIWdlstg~ 1985 (2004)
+|. .+.++-+||-.+.+.. ..+. .+..|.---|.+|...++.+|. |+.||.|.+.+..
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 654 3678999997654433 2333 3455666667888888877664 9999999998875
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-11 Score=156.94 Aligned_cols=265 Identities=15% Similarity=0.195 Sum_probs=191.0
Q ss_pred EECCCCceEEEeeCCCCceEEEEEecCC-CEEEEeecCCeEEEEEcCCCCCC-CcceEEEEEecCccceeeeEEe-CCCc
Q psy8748 1719 WDTWTGNKTQVIPLRSAWVMSVAFAQSG-NFVACGGMDNMCTVYDLNNRDST-GAAKVIRELLGYEGFLSSCRFI-DDTT 1795 (2004)
Q Consensus 1719 WDl~Tgk~l~ti~~Ht~~ItsLafSPdg-~~LaSGS~DGtIrVWDl~t~~~~-~~~k~i~sl~gh~~~Vssvafs-dd~~ 1795 (2004)
|+. .|..+..+..|...|..++.++.. .++++|+.||+|++|+....... ...+...++......+.++... .++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 763 677888888899888888887754 99999999999999999764433 3444445555566777777776 4566
Q ss_pred EEEeecCCeEEEEECCCCce--e-----EEeeccccCCeEEE-EECC-CCC-EEEEEECCCeEEEEECCCCeEEEEEe--
Q psy8748 1796 LLTGSGDMKIVTWNLETGQR--I-----HEVAQAHIGDVVSI-SLSP-DGQ-YFVTGSVDKSCKLWDFREKKCVQTFF-- 1863 (2004)
Q Consensus 1796 LlSgS~DGtI~IWDl~tg~~--i-----~~il~~h~~~ItsL-afSP-dg~-~LaSGS~DGsIrIWDlrs~k~I~tl~-- 1863 (2004)
+++++.||.|.+.+++.... . ........+.+.++ +|.. .+. .++.++.-+.|..||.+.......++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 89999999999999876211 1 11111223333333 3332 233 78888888999999998766544443
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCC---CCEEEE-Ee-CCCeEEEEE
Q psy8748 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS---GRYIFC-GS-DDNNVHVWD 1938 (2004)
Q Consensus 1864 ~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPd---G~~LaS-GS-sDGsIrIWD 1938 (2004)
...+.|++++.+|.+++++.|+..|.+.+||++-+..+..+..+.+ .++..+..+|- ....++ |+ ..+.|.+|+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 3467899999999999999999999999999998888888765554 77777777763 244444 44 478899999
Q ss_pred CCCCeeeEEEccC-C------------------CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q psy8748 1939 LLKTTHNGVLSGH-E------------------NRVTSISLSPNGMALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1939 L~tge~l~tL~gH-s------------------~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
+.+|.+...+... . -......+...+..+.+||.|+.|+.||.....
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 9998777766432 1 112223444456789999999999999998764
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-12 Score=151.69 Aligned_cols=197 Identities=21% Similarity=0.312 Sum_probs=153.1
Q ss_pred eEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEE
Q psy8748 1696 NSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI 1775 (2004)
Q Consensus 1696 tsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i 1775 (2004)
.+++|+.+|..+++|+.||++|||++.+...+.....|.+.|.++.|+|||++|++.+.| ..+||+.+++.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t-- 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT-- 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC--
Confidence 689999999999999999999999998888888888899999999999999999999999 79999998763221111
Q ss_pred EEEecCccceeeeEEeCCC-----cEEEe-ecCCeEEEEECCCCce----eEEeeccccCCeEEEEECCCCCEEEEEECC
Q psy8748 1776 RELLGYEGFLSSCRFIDDT-----TLLTG-SGDMKIVTWNLETGQR----IHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1776 ~sl~gh~~~Vssvafsdd~-----~LlSg-S~DGtI~IWDl~tg~~----i~~il~~h~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
-.........|.|..++ ++++. ...+.|..||+..... ...........|++++++.+|++++.|+.|
T Consensus 225 --~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 225 --PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred --CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 12334456667777544 33332 2345666666543222 111111233479999999999999999999
Q ss_pred CeEEEEECCCCeEEEEE-ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC
Q psy8748 1846 KSCKLWDFREKKCVQTF-FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1846 GsIrIWDlrs~k~I~tl-~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt 1897 (2004)
|.|-|++..+.+.++.. +.|...|+.+.|+|+.+++++.+.|....+..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999888776655 47889999999999999999999999888887754
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-12 Score=152.40 Aligned_cols=221 Identities=24% Similarity=0.390 Sum_probs=163.9
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe-eCCCCceEEEEEec--CCCEEEEeecCCeEEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI-PLRSAWVMSVAFAQ--SGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti-~~Ht~~ItsLafSP--dg~~LaSGS~DGtIrV 1760 (2004)
...+|.||++.|+|+.|+.||.+|++|++|-.+.|||.-..+.++.+ .+|.+.|.++.|-| +.+.+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45689999999999999999999999999999999999988888877 57999999999998 4568999999999999
Q ss_pred EEcCCCCC----CCcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEe---------eccccC
Q psy8748 1761 YDLNNRDS----TGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEV---------AQAHIG 1825 (2004)
Q Consensus 1761 WDl~t~~~----~~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~i---------l~~h~~ 1825 (2004)
+|++..+. .+..........|...|..++..++ +.+.+++.||+|+-+|++.......- .....-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985321 1123334455667777777776654 46999999999999999874322111 111123
Q ss_pred CeEEEEECCC-CCEEEEEECCCeEEEEECCC--------Ce----------EEEEEe-cCC--------C---CeEEEEE
Q psy8748 1826 DVVSISLSPD-GQYFVTGSVDKSCKLWDFRE--------KK----------CVQTFF-GHE--------A---DVNSVCF 1874 (2004)
Q Consensus 1826 ~ItsLafSPd-g~~LaSGS~DGsIrIWDlrs--------~k----------~I~tl~-~h~--------s---~ItsIaf 1874 (2004)
...|+.++|. ..+|++|+.|-..++||.+. +. ++..+. +|- . .++-+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 4678999994 56899999999999999541 11 122221 111 1 2456789
Q ss_pred eCCCCEEEEEECCCeEEEEEccCCceeEEE
Q psy8748 1875 HPSGLAFATGSEDKTARLFDIRADQQIATY 1904 (2004)
Q Consensus 1875 SPdg~~LaSgS~DGtIrIWDLrtgk~i~t~ 1904 (2004)
+|+|.-+++.-....|+++|+..++....+
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 999988777666778999999876654433
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=7e-11 Score=144.02 Aligned_cols=281 Identities=14% Similarity=0.192 Sum_probs=206.0
Q ss_pred ccccceeEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCC
Q psy8748 1690 GHINKVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS 1768 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~ 1768 (2004)
+|...-+.|..+|||+|+ |||..--.|++||+..-.....-......|.-.-.+.|-...+.-..|..|.+..--..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~-- 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR-- 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe--
Confidence 366778899999999985 56777889999998776555443333445555555666666666667777765432110
Q ss_pred CCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCe
Q psy8748 1769 TGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGs 1847 (2004)
.... ........++++ ...-+++++....|+-++++.|..+..+ ....+.+.++..++...+|++|+.+|.
T Consensus 127 -----hy~~--RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 127 -----HYRT--RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred -----eeee--ecCcCCccccccCCCccEEEeecCcceEEEEcccccccccc-ccccccceeeeecCccceEEecccCce
Confidence 0000 011222334444 3345777778888999999999877443 445578999999999999999999999
Q ss_pred EEEEECCCCeEEEEEec------CCC-----CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1848 CKLWDFREKKCVQTFFG------HEA-----DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1848 IrIWDlrs~k~I~tl~~------h~s-----~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
|..||.+....+..+.. |.+ .|+++.|+.+|-.+++|+.+|.|.|||+++.+++... .+....+|..+
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l 277 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKL 277 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeee
Confidence 99999998776655532 222 4999999999999999999999999999988876554 34455678899
Q ss_pred EEcCC--CCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1917 AVSSS--GRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1917 afSPd--G~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
.|.+. ++.+++. +...++|||-.+|+....+.. ...+..+++-|++.+++++-.++.+..|=+..
T Consensus 278 ~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 99775 3445543 456799999999999888864 44599999999999999999988887776553
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.8e-12 Score=150.67 Aligned_cols=292 Identities=17% Similarity=0.176 Sum_probs=211.7
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..+|++.|+.|.|...|..|+| |++|..|.+|||.. +.....+
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~S-gSDD~~vv~WdW~~-------------~~~~l~f----------------------- 180 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLAS-GSDDLQVVVWDWVS-------------GSPKLSF----------------------- 180 (559)
T ss_pred ccCCCCccceeeecccCceeec-cCccceEEeehhhc-------------cCccccc-----------------------
Confidence 4569999999999999999999 99999999999988 2211111
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC--CCCEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG--DSRHCV 1708 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP--DG~~LA 1708 (2004)
..||...|..-.|-| +.+-++
T Consensus 181 ---------------------------------------------------------~SGH~~NvfQaKFiP~s~d~ti~ 203 (559)
T KOG1334|consen 181 ---------------------------------------------------------ESGHCNNVFQAKFIPFSGDRTIV 203 (559)
T ss_pred ---------------------------------------------------------ccccccchhhhhccCCCCCcCce
Confidence 124555555555655 345689
Q ss_pred EEeCCCeEEEEECCC-Cce--EEEeeCCCCceEEEEEecCC-CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcc-
Q psy8748 1709 SGSLDGKLIIWDTWT-GNK--TQVIPLRSAWVMSVAFAQSG-NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG- 1783 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~T-gk~--l~ti~~Ht~~ItsLafSPdg-~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~- 1783 (2004)
+++.||.+++=.+.. +.. ...+..|.++|..++.-|+. .-|.+++.|+.+.-+|+.......... ....+..
T Consensus 204 ~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~---cr~~~~~~ 280 (559)
T KOG1334|consen 204 TSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV---CREADEKE 280 (559)
T ss_pred eccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee---eeccCCcc
Confidence 999999999876543 322 33456799999999999965 578899999999999987654322222 2222222
Q ss_pred --ceeeeEEeC--CCcEEEeecCCeEEEEECCCCcee------EEe-----eccccCCeEEEEECCCCCEEEEEECCCeE
Q psy8748 1784 --FLSSCRFID--DTTLLTGSGDMKIVTWNLETGQRI------HEV-----AQAHIGDVVSISLSPDGQYFVTGSVDKSC 1848 (2004)
Q Consensus 1784 --~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~i------~~i-----l~~h~~~ItsLafSPdg~~LaSGS~DGsI 1848 (2004)
....++..+ ...+++|+.|..+++||.+.-... .++ .....-.|+|++|+.++.-+.++..|-.|
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 334444443 346999999999999998643221 122 12334569999999888888888889899
Q ss_pred EEEECC--CC----------eEEEE-EecCCC--CeEEEEE-eCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1849 KLWDFR--EK----------KCVQT-FFGHEA--DVNSVCF-HPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1849 rIWDlr--s~----------k~I~t-l~~h~s--~ItsIaf-SPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
+++.-. .+ ..+.. +++|.. .|.++-| -|...++++|+.-|.|.||+-.+++.+.......+ -
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~--V 438 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--V 438 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc--e
Confidence 999533 12 22233 677754 4667765 57888999999999999999998888776654443 7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
|.|+.-+|--..||+.+-|..|+||--.+
T Consensus 439 VNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 439 VNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred EeccCCCCCCchhhccCCccceeeecCCc
Confidence 89999999999999999999999998644
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.6e-10 Score=128.89 Aligned_cols=235 Identities=17% Similarity=0.275 Sum_probs=162.7
Q ss_pred eeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCc--eEEEEEecCCCEEEE-eecC------CeEEEEEcCC
Q psy8748 1695 VNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAW--VMSVAFAQSGNFVAC-GGMD------NMCTVYDLNN 1765 (2004)
Q Consensus 1695 VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~--ItsLafSPdg~~LaS-GS~D------GtIrVWDl~t 1765 (2004)
..+++|+.|...+++|.++| .+||+.+--+....-..+.+. +.-|-| ..++++. ||.+ ..+.|||=..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 34599999999999998776 899987654332222222222 222222 2444443 3332 4799999321
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCC-ceeEEeec-cccCCeEEEEECCCCCEEEE-E
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETG-QRIHEVAQ-AHIGDVVSISLSPDGQYFVT-G 1842 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg-~~i~~il~-~h~~~ItsLafSPdg~~LaS-G 1842 (2004)
...+.+ ......|..+....+..++ --.+.|++|...+. +.++.+.. .......+++-+.+..+|+. |
T Consensus 85 ------~~~i~e-l~f~~~I~~V~l~r~riVv--vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg 155 (346)
T KOG2111|consen 85 ------ERCIIE-LSFNSEIKAVKLRRDRIVV--VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG 155 (346)
T ss_pred ------CcEEEE-EEeccceeeEEEcCCeEEE--EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC
Confidence 122222 2345677777776554333 34678999998743 44433321 11333444443334444444 4
Q ss_pred ECCCeEEEEECCCCeE--EEEEecCCCCeEEEEEeCCCCEEEEEECCCe-EEEEEccCCceeEEEcCCCCCCCeEEEEEc
Q psy8748 1843 SVDKSCKLWDFREKKC--VQTFFGHEADVNSVCFHPSGLAFATGSEDKT-ARLFDIRADQQIATYLPPNKNSGFTSCAVS 1919 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~--I~tl~~h~s~ItsIafSPdg~~LaSgS~DGt-IrIWDLrtgk~i~t~~~~~~~s~ItsLafS 1919 (2004)
-.-|.|+|-|+...+. ...+.+|...|.|++.+-+|..++++|..|+ |||||..+|..+..+........|.+++|+
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 4568999999986654 4678899999999999999999999999998 899999999999999777777889999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCC
Q psy8748 1920 SSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1920 PdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
|++.+|+++++.|+++||.++.
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999999998865
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.7e-11 Score=139.84 Aligned_cols=250 Identities=16% Similarity=0.258 Sum_probs=183.2
Q ss_pred CCceEEEEEecCCC--EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECC
Q psy8748 1734 SAWVMSVAFAQSGN--FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLE 1811 (2004)
Q Consensus 1734 t~~ItsLafSPdg~--~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~ 1811 (2004)
...|..++|.-+++ .+...+.+..+..+.+...................+.|..+... ++.+++|..+|.+.+|..+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CCEEEEEecCCcEEEEecc
Confidence 45677888876554 44444466667777766544333322233444455556655554 4468888999999999988
Q ss_pred CCcee--EEeeccccCCeEEEEECCCCC-EEEEEECC--CeEEEEECCCCeEEEEEecC---------CCCeEEEEEeCC
Q psy8748 1812 TGQRI--HEVAQAHIGDVVSISLSPDGQ-YFVTGSVD--KSCKLWDFREKKCVQTFFGH---------EADVNSVCFHPS 1877 (2004)
Q Consensus 1812 tg~~i--~~il~~h~~~ItsLafSPdg~-~LaSGS~D--GsIrIWDlrs~k~I~tl~~h---------~s~ItsIafSPd 1877 (2004)
.+..- ..........+..+.-++... .+++||.. ..+.|||+.+.+.+..-+.- .-.++++.|-+.
T Consensus 134 ~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g 213 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEG 213 (412)
T ss_pred CCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCC
Confidence 54311 011112235566666666444 55668888 78999999988655544321 124668889887
Q ss_pred --CCEEEEEECCCeEEEEEccCCce-eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EccCCC
Q psy8748 1878 --GLAFATGSEDKTARLFDIRADQQ-IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGV-LSGHEN 1953 (2004)
Q Consensus 1878 --g~~LaSgS~DGtIrIWDLrtgk~-i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~t-L~gHs~ 1953 (2004)
...|++++.-+.+++||.+.++. +..+. -...+++++...|+|++|++|..-|.+..||++.++.... +.+-.+
T Consensus 214 ~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd--~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 214 SPNYKFATITRYHQVRLYDTRHQRRPVAQFD--FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCceEEEEecceeEEEecCcccCcceeEec--cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 78899999999999999987654 44443 3357899999999999999999999999999999998877 889999
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1954 RVTSISLSPNGMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1954 ~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
.|+++..+|.++++++||-|+.|||+|+.+.++
T Consensus 292 sirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 292 SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred CcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 999999999999999999999999999998643
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-10 Score=132.62 Aligned_cols=239 Identities=17% Similarity=0.241 Sum_probs=167.0
Q ss_pred ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC------CeEEEEE
Q psy8748 1736 WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD------MKIVTWN 1809 (2004)
Q Consensus 1736 ~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D------GtI~IWD 1809 (2004)
...+++|+.|...+++|..+| .++|+.+.-+.. ..+......-.+..+-|-.+-..++|+.+ ..|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~----~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES----ASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhh----hhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEe
Confidence 345589999999999999888 899998742210 11111111122222222222234455544 5799999
Q ss_pred CCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECC-CCeEEEEEecCC--CCeEEEEEeCCCCEEEE-EE
Q psy8748 1810 LETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR-EKKCVQTFFGHE--ADVNSVCFHPSGLAFAT-GS 1885 (2004)
Q Consensus 1810 l~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlr-s~k~I~tl~~h~--s~ItsIafSPdg~~LaS-gS 1885 (2004)
-....++.+. ....+|.++.+.++ .+++.- .+.|++|... +.+.+..+.... ....+++-..+..+|+. |-
T Consensus 82 D~k~~~i~el--~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 82 DLKERCIIEL--SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred cccCcEEEEE--EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 7666666555 56788999999854 455554 6789999987 445555554322 22333333334444554 34
Q ss_pred CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeeeEEEcc--CCCCeEEEEEcC
Q psy8748 1886 EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNN-VHVWDLLKTTHNGVLSG--HENRVTSISLSP 1962 (2004)
Q Consensus 1886 ~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGs-IrIWDL~tge~l~tL~g--Hs~~VtsLaFSP 1962 (2004)
.-|.|+|-|+...+.-.......|...|.|++.+-+|..+|+++..|+ |||||..+|+.+..++- ....|.+++|+|
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC
Confidence 568999999986655222333678899999999999999999999998 89999999999998853 345799999999
Q ss_pred CCCEEEEEECCCeEEEEECCCC
Q psy8748 1963 NGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1963 Dg~~LaSgS~DGtIrIWdlstg 1984 (2004)
++.+|+++|+-|+|+||.+...
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999998764
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-10 Score=131.97 Aligned_cols=285 Identities=18% Similarity=0.240 Sum_probs=190.0
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee-CCCCceEEEEEecCC-CEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP-LRSAWVMSVAFAQSG-NFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~-~Ht~~ItsLafSPdg-~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
-.+..++|++.-..+|++..|-.|++||-.+ +....++ .....|+|++|-|.+ ..|++|+..| |.+|..+......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4677899998777789999999999999766 4444443 345679999999964 5677777665 9999876432111
Q ss_pred c--------ceEEEEEecCccceeeeEEeCCCc-EEEee-cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1771 A--------AKVIRELLGYEGFLSSCRFIDDTT-LLTGS-GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1771 ~--------~k~i~sl~gh~~~Vssvafsdd~~-LlSgS-~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
. ...+....+| ..|+++.|.+++. +++++ .|..|.+||.+++..+.-. ....+.++-+.|+|||.+|+
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCCEEE
Confidence 1 0011122333 6889999986654 55554 5688999999999877433 34557789999999999999
Q ss_pred EEECCCeEEEEECC-CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEc--------------
Q psy8748 1841 TGSVDKSCKLWDFR-EKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL-------------- 1905 (2004)
Q Consensus 1841 SGS~DGsIrIWDlr-s~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~-------------- 1905 (2004)
+++-|+..++|... +....+-. ...+.|...+|+|+|+++...+. |.-++|.+.-......+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL 332 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADL 332 (445)
T ss_pred Eecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccc
Confidence 99999999999544 33333333 33458999999999998665542 344555442111100000
Q ss_pred --------CCCCCCCeEEEEEcCCCCEEEEEeCCC--------eEEEEECCCCeeeEEE-cc--CCCCeEEEEEcC---C
Q psy8748 1906 --------PPNKNSGFTSCAVSSSGRYIFCGSDDN--------NVHVWDLLKTTHNGVL-SG--HENRVTSISLSP---N 1963 (2004)
Q Consensus 1906 --------~~~~~s~ItsLafSPdG~~LaSGSsDG--------sIrIWDL~tge~l~tL-~g--Hs~~VtsLaFSP---D 1963 (2004)
..-..+++.+++|+|.|.++++....+ .|.+||.+..-.+... -+ ....-..++|+| +
T Consensus 333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~ 412 (445)
T KOG2139|consen 333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNE 412 (445)
T ss_pred hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccC
Confidence 001145688999999999999976644 3677887665444322 11 112245566665 6
Q ss_pred CCEEEEEECCCeEEEEECCC
Q psy8748 1964 GMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1964 g~~LaSgS~DGtIrIWdlst 1983 (2004)
|.+|..+=..|.+.-|.+.-
T Consensus 413 g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 413 GRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred CcEEEEEeccCceEeeeeEE
Confidence 77777777788888887653
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-10 Score=132.66 Aligned_cols=261 Identities=15% Similarity=0.151 Sum_probs=194.1
Q ss_pred EeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEE
Q psy8748 1729 VIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVT 1807 (2004)
Q Consensus 1729 ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~I 1807 (2004)
.+..-..+|+|.+|++|+..++++.....|.||.....+ ..+...++..|...++++.|.+. +++++++.|..-++
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~---~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD---LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC---CceeceehhhhCcceeEEeecCCCCceeEccCCCCccc
Confidence 344456789999999999999999999999999987653 46778889999999999999965 58999999999999
Q ss_pred EECC-CCceeE-EeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEE----EEEecCCCCeEEEEEeCCCCEE
Q psy8748 1808 WNLE-TGQRIH-EVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCV----QTFFGHEADVNSVCFHPSGLAF 1881 (2004)
Q Consensus 1808 WDl~-tg~~i~-~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I----~tl~~h~s~ItsIafSPdg~~L 1881 (2004)
|... .++-.. -.+..+....+++.|+|.++.|++|+....|.||-++...-- ..-+.+...|.+++|+|++-.+
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 9984 433222 224567889999999999999999999999999987654321 1223567889999999999999
Q ss_pred EEEECCCeEEEEEccC------------------CceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q psy8748 1882 ATGSEDKTARLFDIRA------------------DQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1882 aSgS~DGtIrIWDLrt------------------gk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge 1943 (2004)
++|+.|++.++|..-- |..+..+ ....+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~--~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA--SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh--ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999999997421 1112222 1345779999999999999999999999999986654
Q ss_pred -eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeecC
Q psy8748 1944 -HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNL 1995 (2004)
Q Consensus 1944 -~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~ 1995 (2004)
.+..+....-+..++.|-.+.. ++.+|.|..=.+|.......|...+..+.
T Consensus 240 ~~v~~~~~~~lP~ls~~~ise~~-vv~ag~~c~P~lf~~~~~~~l~~~~~ld~ 291 (361)
T KOG1523|consen 240 ERVQSVATAQLPLLSVSWISENS-VVAAGYDCGPVLFVTDEEGGLSFARRLDA 291 (361)
T ss_pred hhccchhhccCCceeeEeecCCc-eeecCCCCCceEEEeccccceeeehhcCC
Confidence 3444443347778888865543 55555564333444333224555444443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-10 Score=147.67 Aligned_cols=223 Identities=15% Similarity=0.119 Sum_probs=151.7
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCC---CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee-cCCeEEE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLD---GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG-MDNMCTV 1760 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~D---GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS-~DGtIrV 1760 (2004)
.+.+..|...|.+.+|||||+.|+.++.+ ..|++||+.+++.... ....+....++|+|||+.|+.++ .+|.+.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence 45677888899999999999999987654 4699999988764322 21222344689999999888764 6787776
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEE-eecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCE
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLT-GSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQY 1838 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlS-gS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~ 1838 (2004)
|.++... .....+..+...+....|++++. ++. +..+|...+|+++......... .+.+ .+..|+|+|++
T Consensus 275 y~~d~~~-----~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ 346 (429)
T PRK01742 275 YVMGANG-----GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKT 346 (429)
T ss_pred EEEECCC-----CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCE
Confidence 6553211 11234455566677888987664 444 4456777888765322211222 3333 45789999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEcc--CCceeEEEcCCCCCCCeEEE
Q psy8748 1839 FVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR--ADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLr--tgk~i~t~~~~~~~s~ItsL 1916 (2004)
++.++.++ +.+||+.+++....... .....+.|+|+|+++++++.+|.+.+|++. +++....+. .+.+.+...
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~--~~~g~~~~p 421 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP--GSDGQVKFP 421 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc--CCCCCCCCc
Confidence 98888765 56699988865432222 234567899999999999999988888763 466666663 444567788
Q ss_pred EEcCC
Q psy8748 1917 AVSSS 1921 (2004)
Q Consensus 1917 afSPd 1921 (2004)
+|+|-
T Consensus 422 ~wsp~ 426 (429)
T PRK01742 422 AWSPY 426 (429)
T ss_pred ccCCC
Confidence 89874
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=148.48 Aligned_cols=271 Identities=20% Similarity=0.274 Sum_probs=209.1
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
..+-..+.++.+|++++.||..|.|..+|+.+++....+... ..|.++.|-.+.++++++- ...+.|||-..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~G------ 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNG------ 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhhh-hceEEEecCCC------
Confidence 456678999999999999999999999999999998888754 4589999998888888764 56789998643
Q ss_pred ceEEEEEecCccceeeeEEeCCCc-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrI 1850 (2004)
..+..+. ....+..+.|.+-.+ +++++..|.+..-|+.+|+.+..+ ....+.+..++-+|-+..+-+|...|+|.+
T Consensus 201 -tElHClk-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~-~t~~G~~~vm~qNP~NaVih~GhsnGtVSl 277 (545)
T KOG1272|consen 201 -TELHCLK-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI-RTGAGRTDVMKQNPYNAVIHLGHSNGTVSL 277 (545)
T ss_pred -cEEeehh-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHH-HccCCccchhhcCCccceEEEcCCCceEEe
Confidence 2222222 234566777887776 556777899999999999988554 455678888999998889999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1851 WDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1851 WDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
|.....+++..+..|.++|.+|++.++|.|+++.+.|..++|||++....+.++..+ .+...+++|..| .||. +.
T Consensus 278 WSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg-lLA~-~~ 352 (545)
T KOG1272|consen 278 WSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG-LLAL-SY 352 (545)
T ss_pred cCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc-ceee-ec
Confidence 999999999999999999999999999999999999999999999998877776442 345677887655 3444 34
Q ss_pred CCeEEEEE-CCCC--eeeEEEccC--CCCeEEEEEcCCCCEEEEEECCCeEEE
Q psy8748 1931 DNNVHVWD-LLKT--THNGVLSGH--ENRVTSISLSPNGMALVTSSWDQFVKV 1978 (2004)
Q Consensus 1931 DGsIrIWD-L~tg--e~l~tL~gH--s~~VtsLaFSPDg~~LaSgS~DGtIrI 1978 (2004)
...|.||. ...+ .....+-.| .+.|.++.|+|-...|-.|-..|.-.+
T Consensus 353 G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 353 GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 55699994 3221 122222222 458999999998777777665554433
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=7e-12 Score=149.81 Aligned_cols=233 Identities=17% Similarity=0.282 Sum_probs=192.1
Q ss_pred CCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCC
Q psy8748 1734 SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETG 1813 (2004)
Q Consensus 1734 t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg 1813 (2004)
.-.-+.+.++.+|+.++.|+..|.+-.+|+.++. ..........|..+.|..+..+++......+++||-. |
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~-------L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK-------LHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-G 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccce-------eeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCC-C
Confidence 3445778999999999999999999999997643 2222233556788888888888888899999999964 5
Q ss_pred ceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEE
Q psy8748 1814 QRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLF 1893 (2004)
Q Consensus 1814 ~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIW 1893 (2004)
..++.+ .....|..+.|-|-.-+|++++..|.++.-|+..|+.+..+....+.+..++-+|-+-.+-+|...|+|.+|
T Consensus 201 tElHCl--k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 201 TELHCL--KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred cEEeeh--hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEec
Confidence 555444 234678999999998899999999999999999999999998888999999999988899999999999999
Q ss_pred EccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECC
Q psy8748 1894 DIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWD 1973 (2004)
Q Consensus 1894 DLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D 1973 (2004)
.......+.++. .|.++|.++++.++|+|+++.+.|..++|||++....+.++.. ..+...++||..| ++++|..
T Consensus 279 SP~skePLvKiL--cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G 353 (545)
T KOG1272|consen 279 SPNSKEPLVKIL--CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYG 353 (545)
T ss_pred CCCCcchHHHHH--hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecC
Confidence 998888777663 5678999999999999999999999999999999887777664 5667888888666 3344445
Q ss_pred CeEEEEEC
Q psy8748 1974 QFVKVWQE 1981 (2004)
Q Consensus 1974 GtIrIWdl 1981 (2004)
..|.||.-
T Consensus 354 ~~v~iw~d 361 (545)
T KOG1272|consen 354 DHVQIWKD 361 (545)
T ss_pred Ceeeeehh
Confidence 57999963
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-09 Score=137.02 Aligned_cols=234 Identities=14% Similarity=0.088 Sum_probs=160.0
Q ss_pred CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec---CCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM---DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~---DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf 1790 (2004)
..|.+||...+.. +.+..+...+.+..|+|||+.|+..+. +..|.+|++.+++ ...+. ...+......|
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~----~~~l~---~~~~~~~~~~~ 250 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVA---SFPRHNGAPAF 250 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC----eEEcc---CCCCCcCCeEE
Confidence 4799999765443 444556678999999999998886542 3578999987642 12222 22333456788
Q ss_pred eCCCc-EEEe-ecCC--eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC-C--eEEEEECCCCeEEEEEe
Q psy8748 1791 IDDTT-LLTG-SGDM--KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD-K--SCKLWDFREKKCVQTFF 1863 (2004)
Q Consensus 1791 sdd~~-LlSg-S~DG--tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D-G--sIrIWDlrs~k~I~tl~ 1863 (2004)
++++. ++.. +.+| .|++||+.+++.. .+ ..+...+....|+|||+.|+.++.+ | .|+++|+.++.. ..+.
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt 327 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQIR-QV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRIT 327 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEE-Ec-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEee
Confidence 86664 4433 3344 5999999887654 23 2334567889999999988877754 4 455557766653 3333
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECC---CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCe---EEEE
Q psy8748 1864 GHEADVNSVCFHPSGLAFATGSED---KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNN---VHVW 1937 (2004)
Q Consensus 1864 ~h~s~ItsIafSPdg~~LaSgS~D---GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGs---IrIW 1937 (2004)
..........|+|||++++..+.+ ..|.+||+.++... .+... .......|+|||++|+.++.++. ++++
T Consensus 328 ~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 328 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 444456678999999998876643 35888999877643 33221 12346789999999999887764 6777
Q ss_pred ECCCCeeeEEEccCCCCeEEEEEcCC
Q psy8748 1938 DLLKTTHNGVLSGHENRVTSISLSPN 1963 (2004)
Q Consensus 1938 DL~tge~l~tL~gHs~~VtsLaFSPD 1963 (2004)
++ +|.....+.+|.+.+...+|+|-
T Consensus 404 ~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 404 ST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EC-CCCCeEECccCCCCcCCcccCCC
Confidence 77 56667778888889999999873
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.6e-11 Score=136.92 Aligned_cols=191 Identities=16% Similarity=0.223 Sum_probs=151.1
Q ss_pred CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC--CCCEEEEEECCCeEEEEECCCCeEEEEE--ecCC-CC
Q psy8748 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP--DGQYFVTGSVDKSCKLWDFREKKCVQTF--FGHE-AD 1868 (2004)
Q Consensus 1794 ~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP--dg~~LaSGS~DGsIrIWDlrs~k~I~tl--~~h~-s~ 1868 (2004)
+.++++...|.|++||..+++.+ ..+.++...+..+.|.. ....+.+++.||+|++||+|.......+ ..+. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l-~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL-EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh-heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 46888999999999999998877 44578888888898876 4668999999999999999976554433 3444 45
Q ss_pred eEEEEEeCCCCEEEEEEC----CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe
Q psy8748 1869 VNSVCFHPSGLAFATGSE----DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS-SGRYIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1869 ItsIafSPdg~~LaSgS~----DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP-dG~~LaSGSsDGsIrIWDL~tge 1943 (2004)
..|++..-.++.+++|+. +-.|.+||++..+.........|...|+++.|+| +.+.|++|+.||-|.+||++...
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 667776667778888764 5679999999888743344467778999999999 56899999999999999996543
Q ss_pred e---eEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCe
Q psy8748 1944 H---NGVLSGHENRVTSISLSPNG-MALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1944 ~---l~tL~gHs~~VtsLaFSPDg-~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
. +...-.|...|..+.|..++ +.|.+-+..++..+|+++.+.
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 2 22223477889999998776 458888999999999999875
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-09 Score=130.65 Aligned_cols=248 Identities=14% Similarity=0.140 Sum_probs=155.6
Q ss_pred ceeEEEEeCCCCEEEEEe-CCCeEEEEECCCCceEEEeeCC-------CCceEEEEEecCCCEEEEe-ecCCeEEEEEcC
Q psy8748 1694 KVNSVHYSGDSRHCVSGS-LDGKLIIWDTWTGNKTQVIPLR-------SAWVMSVAFAQSGNFVACG-GMDNMCTVYDLN 1764 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS-~DGtIrVWDl~Tgk~l~ti~~H-------t~~ItsLafSPdg~~LaSG-S~DGtIrVWDl~ 1764 (2004)
...++++|+||++++++. .++.+.++|.++.+.++.+... ...+.++..++.+..++.. -..+.|.+.|..
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 346899999999988775 5799999999999999887643 3467788888888855554 445888777876
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCC-cEEE-eecCCeEEEEECCCCceeEEee---ccccCCeEEEEECCCC---
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLT-GSGDMKIVTWNLETGQRIHEVA---QAHIGDVVSISLSPDG--- 1836 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlS-gS~DGtI~IWDl~tg~~i~~il---~~h~~~ItsLafSPdg--- 1836 (2004)
... .................|.+++ ++++ ...+..|-++|..+++....+. ..|..+...+ .||..
T Consensus 159 d~~-----~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~v 232 (369)
T PF02239_consen 159 DPK-----NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPV 232 (369)
T ss_dssp TSS-----CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEE
T ss_pred ccc-----ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceE
Confidence 542 1222233334455667777655 4444 4567799999999887765442 2244444433 23322
Q ss_pred -------CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE----ECCCeEEEEEccCCceeEEEc
Q psy8748 1837 -------QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATG----SEDKTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1837 -------~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSg----S~DGtIrIWDLrtgk~i~t~~ 1905 (2004)
...++.-..+.+.+||....+.++.+.....+ ..+..+|+++++++. ...++|.++|.++.+...++.
T Consensus 233 w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~ 311 (369)
T PF02239_consen 233 WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT 311 (369)
T ss_dssp EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH
T ss_pred EeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe
Confidence 22212222335667888899999999877666 788899999999998 445889999999987776663
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEc
Q psy8748 1906 PPNKNSGFTSCAVSSSGRYIFCGSD--DNNVHVWDLLKTTHNGVLS 1949 (2004)
Q Consensus 1906 ~~~~~s~ItsLafSPdG~~LaSGSs--DGsIrIWDL~tge~l~tL~ 1949 (2004)
... ...+..+.|+++|+++..+.. +|.|.+||..+.+.+..+.
T Consensus 312 ~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 312 PGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 221 234889999999998776554 3479999999999998876
|
... |
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-10 Score=138.16 Aligned_cols=200 Identities=16% Similarity=0.235 Sum_probs=154.7
Q ss_pred eEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEE
Q psy8748 1696 NSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI 1775 (2004)
Q Consensus 1696 tsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i 1775 (2004)
.+++++.-.--|..++....|+-++++.|+.+..+....+.++++..++...+|++|+.+|.|..||.+...........
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 35556533333555555567999999999999999988899999999999999999999999999999876544443333
Q ss_pred EEEecCcc-----ceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC--CCEEEEEECCCe
Q psy8748 1776 RELLGYEG-----FLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD--GQYFVTGSVDKS 1847 (2004)
Q Consensus 1776 ~sl~gh~~-----~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd--g~~LaSGS~DGs 1847 (2004)
.....+.+ .|+++.|.+++ .+.+|+.+|.|.+||+++.+.+...-.+..-+|..+.|.+. ++.+++. ....
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~ 295 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRI 295 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHH
Confidence 33333333 48999999855 59999999999999999998875554455667889999774 3445544 4568
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC
Q psy8748 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1848 IrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt 1897 (2004)
++|||-.+|+....+.. ...++.+|+-|++.+++++-.++.+..|=+..
T Consensus 296 ~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 296 LKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred hhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 99999999998887754 45599999999999999999888877776544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.7e-09 Score=133.88 Aligned_cols=220 Identities=17% Similarity=0.183 Sum_probs=148.8
Q ss_pred CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD 1793 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd 1793 (2004)
..|.+||. +|...+.+..+...+.+..|+|||+.|+..+..+
T Consensus 182 ~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~------------------------------------- 223 (435)
T PRK05137 182 KRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN------------------------------------- 223 (435)
T ss_pred eEEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC-------------------------------------
Confidence 47889997 4555566677888899999999999888765321
Q ss_pred CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE-EEECCCe--EEEEECCCCeEEEEEecCCCCeE
Q psy8748 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKS--CKLWDFREKKCVQTFFGHEADVN 1870 (2004)
Q Consensus 1794 ~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La-SGS~DGs--IrIWDlrs~k~I~tl~~h~s~It 1870 (2004)
.+..|++||+.+++.. ....+.+.+.+.+|+|||+.++ +.+.+|. |++||+.++.. ..+..+.....
T Consensus 224 -------g~~~i~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~ 293 (435)
T PRK05137 224 -------GRPRVYLLDLETGQRE--LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDT 293 (435)
T ss_pred -------CCCEEEEEECCCCcEE--EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccC
Confidence 1123455555544432 1123445566789999999776 4455554 88889887764 44555666677
Q ss_pred EEEEeCCCCEEEEEEC-CC--eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCee
Q psy8748 1871 SVCFHPSGLAFATGSE-DK--TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD---NNVHVWDLLKTTH 1944 (2004)
Q Consensus 1871 sIafSPdg~~LaSgS~-DG--tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD---GsIrIWDL~tge~ 1944 (2004)
...|+|||+.++..+. +| .|++||+.++....... ....+....|+|+|++|+..+.+ ..|.+||+..+..
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~---~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF---GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE 370 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec---CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 8999999998887764 33 58888887665433321 12345668899999999877643 3688899755443
Q ss_pred eEEEccCCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCeE
Q psy8748 1945 NGVLSGHENRVTSISLSPNGMALVTSSWD------QFVKVWQESNTIV 1986 (2004)
Q Consensus 1945 l~tL~gHs~~VtsLaFSPDg~~LaSgS~D------GtIrIWdlstg~l 1986 (2004)
..+. +...+....|+|||+.|+..+.+ ..+++++++++..
T Consensus 371 -~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 371 -RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred -Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 3333 23357788999999998776543 2588888877654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-09 Score=137.30 Aligned_cols=233 Identities=18% Similarity=0.136 Sum_probs=158.5
Q ss_pred CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC---CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD---NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D---GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf 1790 (2004)
..|.+||.. +...+.+..+...+.+..|+|||+.|+.++.+ ..|.+|++.++. .. .+....+......|
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~----~~---~l~~~~g~~~~~~~ 255 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ----RE---LVASFRGINGAPSF 255 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC----EE---EeccCCCCccCceE
Confidence 469999974 44455566677789999999999998887643 469999997642 11 22233344556788
Q ss_pred eCCCc-EE-EeecCC--eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC-CCe--EEEEECCCCeEEEEEe
Q psy8748 1791 IDDTT-LL-TGSGDM--KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV-DKS--CKLWDFREKKCVQTFF 1863 (2004)
Q Consensus 1791 sdd~~-Ll-SgS~DG--tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~-DGs--IrIWDlrs~k~I~tl~ 1863 (2004)
++++. ++ +.+.+| .|++||+.+++.. . ...+.......+|+|||+.++.++. +|. |+++|+.+++.. .+.
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt 332 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLT-R-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLT 332 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCeE-E-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eee
Confidence 86654 43 444454 6999999888754 2 2344445567899999998887764 444 777787766543 232
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCC---eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEE
Q psy8748 1864 GHEADVNSVCFHPSGLAFATGSEDK---TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD---NNVHVW 1937 (2004)
Q Consensus 1864 ~h~s~ItsIafSPdg~~LaSgS~DG---tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD---GsIrIW 1937 (2004)
.+.......+|+|+|++++..+.++ .|.+||+.+++.. .+. .. .......|+|||++++..+.+ +.|+++
T Consensus 333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~--~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PG--SLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CC--CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 3334455789999999988766443 5999999877654 332 12 123457899999998877653 468888
Q ss_pred ECCCCeeeEEEccCCCCeEEEEEcC
Q psy8748 1938 DLLKTTHNGVLSGHENRVTSISLSP 1962 (2004)
Q Consensus 1938 DL~tge~l~tL~gHs~~VtsLaFSP 1962 (2004)
++. +.....+..+.+.+...+|+|
T Consensus 409 ~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 409 STD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ECC-CCceEEcccCCCCCCCCccCC
Confidence 884 445566666667788888876
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-09 Score=138.15 Aligned_cols=235 Identities=20% Similarity=0.146 Sum_probs=154.7
Q ss_pred CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC---CeEEEEEcCCCCCCCcceEEEEEecCccceeeeE
Q psy8748 1713 DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD---NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR 1789 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D---GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssva 1789 (2004)
...|.+||. +|...+.+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.++. . ..+....+......
T Consensus 175 ~~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~----~---~~l~~~~g~~~~~~ 246 (427)
T PRK02889 175 RYQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR----R---RVVANFKGSNSAPA 246 (427)
T ss_pred ccEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC----E---EEeecCCCCccceE
Confidence 346888886 555555566677889999999999998877643 469999997653 1 12223334556778
Q ss_pred EeCCC-cEE-EeecCCeEEEE--ECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC-CCeEEEEE--CCCCeEEEEE
Q psy8748 1790 FIDDT-TLL-TGSGDMKIVTW--NLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV-DKSCKLWD--FREKKCVQTF 1862 (2004)
Q Consensus 1790 fsdd~-~Ll-SgS~DGtI~IW--Dl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~-DGsIrIWD--lrs~k~I~tl 1862 (2004)
|++++ .++ +.+.+|...+| |...+.. ..+ ..+.+......|+|||+.++..+. +|...+|. ...+.. ..+
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~l-t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~l 323 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRL-TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRV 323 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCc-EEC-CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEE
Confidence 88665 444 45667765555 5554442 232 334455677899999998886654 45555554 444443 222
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEECCC---eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCC---eEEE
Q psy8748 1863 FGHEADVNSVCFHPSGLAFATGSEDK---TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN---NVHV 1936 (2004)
Q Consensus 1863 ~~h~s~ItsIafSPdg~~LaSgS~DG---tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDG---sIrI 1936 (2004)
..........+|+|+|++++..+.++ .|.+||+.+++... +. .. .......|+|||++|+.++.++ .+++
T Consensus 324 t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt-~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 324 TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT-DT--TRDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc-CC--CCccCceECCCCCEEEEEEecCCCEEEEE
Confidence 22233345678999999998777654 59999998876543 22 11 2235679999999998877544 3666
Q ss_pred EECCCCeeeEEEccCCCCeEEEEEcCC
Q psy8748 1937 WDLLKTTHNGVLSGHENRVTSISLSPN 1963 (2004)
Q Consensus 1937 WDL~tge~l~tL~gHs~~VtsLaFSPD 1963 (2004)
.++ ++.....+..+.+.+...+|+|-
T Consensus 400 ~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 400 VSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEC-CCCceEEeecCCCCCCCCccCCC
Confidence 676 56666667667788888888874
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.9e-10 Score=128.97 Aligned_cols=253 Identities=15% Similarity=0.246 Sum_probs=188.5
Q ss_pred ccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEE-CCCCceEEEee-CCCCceEEEEEecCCCEEEEeecCCe
Q psy8748 1680 VKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD-TWTGNKTQVIP-LRSAWVMSVAFAQSGNFVACGGMDNM 1757 (2004)
Q Consensus 1680 lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWD-l~Tgk~l~ti~-~Ht~~ItsLafSPdg~~LaSGS~DGt 1757 (2004)
.++...+.++||.+.|++...-|...-+++.+.|.+++||- ...++.-..+. ....+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 45556788999999999999999888899999999999994 33455444443 34677999999999999999999999
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
+.-+.+... .......+....|...+..+.|. +...+++.+.|..+..--.+.+..+....... ..+++.+.-.
T Consensus 92 vtefs~sed--fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~- 166 (404)
T KOG1409|consen 92 VTEFALSED--FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFDAL- 166 (404)
T ss_pred EEEEEhhhh--hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCceeeE-
Confidence 998887532 22445567778899999999888 45568888888777665556555443221111 1112222111
Q ss_pred CEEEEEECCCeEEEEECC--CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeE
Q psy8748 1837 QYFVTGSVDKSCKLWDFR--EKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlr--s~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~It 1914 (2004)
+...|...|.|....+. .-..+.++.+|.+.+.+++|.+....+++|..|..+.+||+-.++- ..+....+...+.
T Consensus 167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g-~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 167 -YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG-TAYELQGHNDKVQ 244 (404)
T ss_pred -EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc-eeeeeccchhhhh
Confidence 55667677776665543 4456888999999999999999999999999999999999974433 3333456667788
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1915 SCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1915 sLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
.+...+--+.+++++.||.|.+||+
T Consensus 245 ~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhhhhhhheeeeeccCCCeEEEEec
Confidence 8888888889999999999999997
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.7e-10 Score=124.68 Aligned_cols=151 Identities=21% Similarity=0.398 Sum_probs=111.7
Q ss_pred EEEEECCCCCEEEEEEC----------CCeEEEEECCC-CeEEEEEe-cCCCCeEEEEEeCCCCEEEEE--ECCCeEEEE
Q psy8748 1828 VSISLSPDGQYFVTGSV----------DKSCKLWDFRE-KKCVQTFF-GHEADVNSVCFHPSGLAFATG--SEDKTARLF 1893 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS~----------DGsIrIWDlrs-~k~I~tl~-~h~s~ItsIafSPdg~~LaSg--S~DGtIrIW 1893 (2004)
..+.|+++|.+|++-.. -|...+|.++. +..+..+. ...++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45788998887765443 12344554422 22333333 234579999999999987654 356799999
Q ss_pred EccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEE
Q psy8748 1894 DIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD---DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTS 1970 (2004)
Q Consensus 1894 DLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs---DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSg 1970 (2004)
|++ ++.+..+. ...+..+.|+|+|+++++|+. .|.|.+||+++.+.+.... ...++.++|+|||++++++
T Consensus 89 d~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLATA 161 (194)
T ss_pred cCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEEE
Confidence 997 66666653 245678999999999999874 4779999999888887765 3357999999999999998
Q ss_pred EC------CCeEEEEECCCCe
Q psy8748 1971 SW------DQFVKVWQESNTI 1985 (2004)
Q Consensus 1971 S~------DGtIrIWdlstg~ 1985 (2004)
+. |+.++||+..+..
T Consensus 162 ~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred EeccceeccccEEEEEecCeE
Confidence 64 7889999997653
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.7e-09 Score=127.17 Aligned_cols=275 Identities=16% Similarity=0.269 Sum_probs=184.5
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEe-----ec-----CCeEEEE
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACG-----GM-----DNMCTVY 1761 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSG-----S~-----DGtIrVW 1761 (2004)
...++..++|++|+++|.+. ++.++|++..++..+.+.... .++++.|+|.|+++.+= .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34478889999999888765 578999999888655444433 68999999999988752 11 2347799
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC--EE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ--YF 1839 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~--~L 1839 (2004)
++.++. ....+......-++..|+.+..+++--..+.+++|+....+.+... -|...|+.+.++|.+. .+
T Consensus 111 ~vet~~------~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~v 182 (566)
T KOG2315|consen 111 NVETGV------QRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFV 182 (566)
T ss_pred eeccce------ehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeee--eeccceeeEEecCCCCCceE
Confidence 887621 1111111111124677777777776666778888888765443222 2445566666666421 22
Q ss_pred EE-----EECCCeEEEEEC---------------------------------------------------------CCCe
Q psy8748 1840 VT-----GSVDKSCKLWDF---------------------------------------------------------REKK 1857 (2004)
Q Consensus 1840 aS-----GS~DGsIrIWDl---------------------------------------------------------rs~k 1857 (2004)
++ +|.-+.++||.. ....
T Consensus 183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s 262 (566)
T KOG2315|consen 183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES 262 (566)
T ss_pred EEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence 22 122234555533 2111
Q ss_pred EEEEEecCCCCeEEEEEeCCCCEEEE--EECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC---C
Q psy8748 1858 CVQTFFGHEADVNSVCFHPSGLAFAT--GSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD---N 1932 (2004)
Q Consensus 1858 ~I~tl~~h~s~ItsIafSPdg~~LaS--gS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD---G 1932 (2004)
+...+ ...++|.++.|+|+|+-|++ |-.-.++.|||++ ++.+..+.. ++-.++-|+|.|++|+.++-+ |
T Consensus 263 ~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~~~fnp~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 263 VSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNTAFFNPHGNIILLAGFGNLPG 336 (566)
T ss_pred EEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccceEECCCCCEEEEeecCCCCC
Confidence 11111 23689999999999987655 4456789999987 666666632 445788999999999887654 8
Q ss_pred eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEEC------CCeEEEEECCCCe
Q psy8748 1933 NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW------DQFVKVWQESNTI 1985 (2004)
Q Consensus 1933 sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~------DGtIrIWdlstg~ 1985 (2004)
.|-|||+.+.+++..+.... -+-+.|+|||.+++|+.. |+.++||+..+..
T Consensus 337 ~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 337 DMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred ceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 99999999988888877533 456789999999999864 7889999998763
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-09 Score=129.15 Aligned_cols=266 Identities=17% Similarity=0.159 Sum_probs=191.1
Q ss_pred cccceeEEEEeCCCC--EEEEEeCCCeEEEEECCCCceEEE------eeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1691 HINKVNSVHYSGDSR--HCVSGSLDGKLIIWDTWTGNKTQV------IPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~--~LASGS~DGtIrVWDl~Tgk~l~t------i~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
....|..++|.-+++ .+...+.|..+..+.+..+..... .....++|..++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 446788888876554 455554666777777766554433 23455667766654 56788888999999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeC--CCcEEEeecC--CeEEEEECCCCceeEEeecc--------ccCCeEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGD--MKIVTWNLETGQRIHEVAQA--------HIGDVVSI 1830 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~D--GtI~IWDl~tg~~i~~il~~--------h~~~ItsL 1830 (2004)
...+.... .....+..+ ..+..+.-.+ ...+++|+.. ..+.+||++..+.+.....- -.-.++++
T Consensus 132 ~k~~d~hs--s~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 132 DKSGDLHS--SKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred ccCCcccc--ccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence 97654211 111112111 2233333332 2345668888 88999999988655443211 12246788
Q ss_pred EECCC--CCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC
Q psy8748 1831 SLSPD--GQYFVTGSVDKSCKLWDFREK-KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP 1907 (2004)
Q Consensus 1831 afSPd--g~~LaSGS~DGsIrIWDlrs~-k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~ 1907 (2004)
.|-+. ...|++++.-+.+++||.+.+ +++..+.-.+.+++++...|+++.+++|...|.+..||++.++...... .
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~-k 287 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL-K 287 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc-C
Confidence 89887 789999999999999999854 5788888888999999999999999999999999999999988876632 4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCC
Q psy8748 1908 NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPN 1963 (2004)
Q Consensus 1908 ~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPD 1963 (2004)
+..+.++++..+|.++++++++-|..+||+|+.+.+.+.... -...++++-+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 556889999999999999999999999999998866554432 2445666666543
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-10 Score=139.69 Aligned_cols=211 Identities=23% Similarity=0.377 Sum_probs=161.1
Q ss_pred EEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC--CCCEEEEEECCCeEEEE
Q psy8748 1775 IRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP--DGQYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1775 i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP--dg~~LaSGS~DGsIrIW 1851 (2004)
...+.||.+.|.++.|. ++..+++|++|-.+.+||.-..+.++.+..+|...|.++.|-| +.+.+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 45688999999999999 4556889999999999999999999999999999999999999 56689999999999999
Q ss_pred ECCC----------CeEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEEccCCceeEEE--------cCCCCCCC
Q psy8748 1852 DFRE----------KKCVQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQQIATY--------LPPNKNSG 1912 (2004)
Q Consensus 1852 Dlrs----------~k~I~tl~~h~s~ItsIafSPdg-~~LaSgS~DGtIrIWDLrtgk~i~t~--------~~~~~~s~ 1912 (2004)
|+.. ......+..|...|..++-.|++ ..|.++++||+|+-+|++.......- .....--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9984 23345566788889999999988 78999999999999999863221100 00111234
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEECCC--------Ce----------eeEEE-ccCC--------C---CeEEEEEc
Q psy8748 1913 FTSCAVSS-SGRYIFCGSDDNNVHVWDLLK--------TT----------HNGVL-SGHE--------N---RVTSISLS 1961 (2004)
Q Consensus 1913 ItsLafSP-dG~~LaSGSsDGsIrIWDL~t--------ge----------~l~tL-~gHs--------~---~VtsLaFS 1961 (2004)
..|+.++| +..+|++|+.|--.++||.+. +. ++..+ .+|- . .++-++|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 67899999 457899999999999999421 11 12222 1222 1 25677899
Q ss_pred CCCCEEEEEECCCeEEEEECCCCe
Q psy8748 1962 PNGMALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1962 PDg~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
|+|.-|...-..-.|++|++..++
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCC
Confidence 999876665555679999998775
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-09 Score=124.85 Aligned_cols=273 Identities=15% Similarity=0.191 Sum_probs=180.8
Q ss_pred cccccccceeEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
.+.....++.+++|||||+.+ .+...|-.|.||.+.+.+.... +.....+..++|+|||++.+.++.....-.+.+..
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 345566789999999999754 5666789999999987665543 33345578999999999998887543211111110
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
. ......+.+.-..-..+.+.|++++. .+.+||---.-.+. .....-.+..++|+|.++++++|+.|
T Consensus 165 c---~~W~ll~~f~~dT~DltgieWsPdg~--------~laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qflavGsyD 231 (447)
T KOG4497|consen 165 C---KAWILLKEFKLDTIDLTGIEWSPDGN--------WLAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAVGSYD 231 (447)
T ss_pred h---HHHHHHHhcCCCcccccCceECCCCc--------EEEEecchhhheee--eeeeccceeEEEeccccceEEeeccc
Confidence 0 01122233333344556677776543 34566643222221 11233468899999999999999999
Q ss_pred CeEEEEECCCCeE------------------------------------------------------------EEEEe--
Q psy8748 1846 KSCKLWDFREKKC------------------------------------------------------------VQTFF-- 1863 (2004)
Q Consensus 1846 GsIrIWDlrs~k~------------------------------------------------------------I~tl~-- 1863 (2004)
+.+++.+--+.+. +..++
T Consensus 232 ~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~ 311 (447)
T KOG4497|consen 232 QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPP 311 (447)
T ss_pred hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCC
Confidence 9888765321110 00111
Q ss_pred ----cCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy8748 1864 ----GHEADVNSVCFHPSGLAFATGSE--DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVW 1937 (2004)
Q Consensus 1864 ----~h~s~ItsIafSPdg~~LaSgS~--DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIW 1937 (2004)
.....+.-++|++|..++++-.. -+.+.+||++..+....+. ...+|....|+|....++.+.....+++|
T Consensus 312 tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi---Qk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 312 TDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh---hccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 11233566899999988887643 2469999998776654442 23569999999999889888888889999
Q ss_pred ECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q psy8748 1938 DLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVK 1977 (2004)
Q Consensus 1938 DL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIr 1977 (2004)
...-...+.. .+..-.|..+.|.-+|..++-++.|....
T Consensus 389 ~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 389 APSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred cCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCceEE
Confidence 9765444433 33446799999999999999999997543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-07 Score=113.46 Aligned_cols=278 Identities=17% Similarity=0.224 Sum_probs=178.5
Q ss_pred EEEEeCC----CeEEEEEC--CCCceEEEe-eCCCCceEEEEEecCCCEEEEeec----CCeEEEEEcCCCCCCCcceEE
Q psy8748 1707 CVSGSLD----GKLIIWDT--WTGNKTQVI-PLRSAWVMSVAFAQSGNFVACGGM----DNMCTVYDLNNRDSTGAAKVI 1775 (2004)
Q Consensus 1707 LASGS~D----GtIrVWDl--~Tgk~l~ti-~~Ht~~ItsLafSPdg~~LaSGS~----DGtIrVWDl~t~~~~~~~k~i 1775 (2004)
++.|+.+ +.|.+|++ .+++....- .........++++|++++|.++.. +|.|..|++.... .....+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~--g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT--GTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT--TEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc--ceeEEe
Confidence 4455554 68888877 445433221 113344667899999999988876 5799999987641 233444
Q ss_pred EEEecCccceeeeEEeCCC-cEEEee-cCCeEEEEECCCCceeEEe---e----------ccccCCeEEEEECCCCCEEE
Q psy8748 1776 RELLGYEGFLSSCRFIDDT-TLLTGS-GDMKIVTWNLETGQRIHEV---A----------QAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1776 ~sl~gh~~~Vssvafsdd~-~LlSgS-~DGtI~IWDl~tg~~i~~i---l----------~~h~~~ItsLafSPdg~~La 1840 (2004)
............++..+++ .++++. .+|.|.++++.....+... . ........++.++|+|++++
T Consensus 80 ~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 80 NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 4444334444556666444 455554 6899999999874322222 1 01234578999999999988
Q ss_pred EEEC-CCeEEEEECCCCe--E--EEEE-ecCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEEcc--CCce--eEEEcCC--
Q psy8748 1841 TGSV-DKSCKLWDFREKK--C--VQTF-FGHEADVNSVCFHPSGLAFATGSE-DKTARLFDIR--ADQQ--IATYLPP-- 1907 (2004)
Q Consensus 1841 SGS~-DGsIrIWDlrs~k--~--I~tl-~~h~s~ItsIafSPdg~~LaSgS~-DGtIrIWDLr--tgk~--i~t~~~~-- 1907 (2004)
+... ...|++|++.... . ...+ .......+.+.|+|+++++++..+ ++.|.+|++. ++.. .......
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 8753 3479999987654 2 1222 244567899999999998877654 7789999988 3322 2222111
Q ss_pred --CCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECC--CCe--eeEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q psy8748 1908 --NKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLL--KTT--HNGVLSGHENRVTSISLSPNGMALVTSS-WDQFVKVW 1979 (2004)
Q Consensus 1908 --~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~--tge--~l~tL~gHs~~VtsLaFSPDg~~LaSgS-~DGtIrIW 1979 (2004)
........++++|||++|+++.. ++.|.+|++. +++ .+..+.........++++|+|++|++++ .++.|.+|
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 11125788999999999988764 6789999993 233 3344444455689999999999999887 46799999
Q ss_pred ECC--CCeE
Q psy8748 1980 QES--NTIV 1986 (2004)
Q Consensus 1980 dls--tg~l 1986 (2004)
+++ +|.+
T Consensus 320 ~~d~~tG~l 328 (345)
T PF10282_consen 320 DIDPDTGKL 328 (345)
T ss_dssp EEETTTTEE
T ss_pred EEeCCCCcE
Confidence 874 6654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-08 Score=123.55 Aligned_cols=279 Identities=17% Similarity=0.206 Sum_probs=181.1
Q ss_pred ceeEEEEeCCCCEEEEEeCC---------------CeEEEEECCCCceEEEeeCCCCc--eE-EEEEecCCCEEEEeecC
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLD---------------GKLIIWDTWTGNKTQVIPLRSAW--VM-SVAFAQSGNFVACGGMD 1755 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~D---------------GtIrVWDl~Tgk~l~ti~~Ht~~--It-sLafSPdg~~LaSGS~D 1755 (2004)
.|..+.|||+++||.+-+.. ..+.|||+.+|..+..+.....+ .. -+.|+-+.++.+-. ..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~ 151 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VG 151 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-cc
Confidence 45566667777777665432 35999999999999998876655 44 67888888776654 33
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC---CcEEE-----eecCCeEEEEECCCCceeEEeeccccCCe
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD---TTLLT-----GSGDMKIVTWNLETGQRIHEVAQAHIGDV 1827 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd---~~LlS-----gS~DGtI~IWDl~tg~~i~~il~~h~~~I 1827 (2004)
..++++++...-.......++ ...+....+++. ..++. .+..+.+++|.+..+..+.... -....-
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr-----~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-lfk~~~ 225 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLR-----PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-LFKVSG 225 (561)
T ss_pred CeEEEEecCCccccCchhhcc-----ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-eEeecc
Confidence 468999973221111111111 123444444433 11222 4567889999988666553321 112223
Q ss_pred EEEEECCCCCEEEEEE-----------CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEE
Q psy8748 1828 VSISLSPDGQYFVTGS-----------VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS--EDKTARLFD 1894 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS-----------~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS--~DGtIrIWD 1894 (2004)
..+.|++.|+++++-. ....++++++....+ .......++|..++|.|.++.|++.+ .+..+.++|
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeecc
Confidence 4678898888766422 124688888874443 33336688999999999888766554 678899999
Q ss_pred ccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeee-EEEccCCCCeEEEEEcCCCCEEEEE
Q psy8748 1895 IRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD---NNVHVWDLLKTTHN-GVLSGHENRVTSISLSPNGMALVTS 1970 (2004)
Q Consensus 1895 Lrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD---GsIrIWDL~tge~l-~tL~gHs~~VtsLaFSPDg~~LaSg 1970 (2004)
++.. .. .+.+... =..+.|+|.+++++.++-| |.|-+||......+ ..+.+- ..+-+.|+||+.++.+.
T Consensus 305 lr~N-l~-~~~Pe~~---rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 305 LRGN-LR-FYFPEQK---RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTD 377 (561)
T ss_pred cccc-eE-EecCCcc---cccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEec
Confidence 9855 33 3322222 3557899999999987665 78999998654443 355543 34556899999998876
Q ss_pred E------CCCeEEEEECCCCeEE
Q psy8748 1971 S------WDQFVKVWQESNTIVW 1987 (2004)
Q Consensus 1971 S------~DGtIrIWdlstg~l~ 1987 (2004)
. .|..|.||++.+....
T Consensus 378 ~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 378 TTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred CCCcccccCcceEEEEecCchhh
Confidence 3 3788999999886544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.4e-09 Score=131.11 Aligned_cols=225 Identities=14% Similarity=0.104 Sum_probs=150.3
Q ss_pred cccccccccccceeEEEEeCCCCEEEEEeC---CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEe-ecCCeE
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSL---DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACG-GMDNMC 1758 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG~~LASGS~---DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSG-S~DGtI 1758 (2004)
...+.+..|...+.+.+|+|||+.|+..+. +..|++||+.+|+.. .+..+.+.+.+..|+|||+.++.. +.+|.
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~- 269 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGN- 269 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCC-
Confidence 344567788889999999999999887764 468999999888654 344556677888999999877643 33332
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCE
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQY 1838 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~ 1838 (2004)
..|++||+.++... . +..+.+......|+|||+.
T Consensus 270 --------------------------------------------~~Iy~~d~~~~~~~-~-Lt~~~~~~~~~~~spDG~~ 303 (435)
T PRK05137 270 --------------------------------------------TDIYTMDLRSGTTT-R-LTDSPAIDTSPSYSPDGSQ 303 (435)
T ss_pred --------------------------------------------ceEEEEECCCCceE-E-ccCCCCccCceeEcCCCCE
Confidence 22444444444332 1 1223344556899999998
Q ss_pred EEEEEC-CC--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1839 FVTGSV-DK--SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED---KTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1839 LaSGS~-DG--sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D---GtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
++..+. +| .|++||+..+.. ..+..+...+....|+|+|+.++..+.+ ..|.+||+.++.. ..+. .. ..
T Consensus 304 i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~--~~ 378 (435)
T PRK05137 304 IVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SG--FL 378 (435)
T ss_pred EEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CC--CC
Confidence 887764 33 688889876654 3343345556778999999999877653 3588888765443 3332 12 23
Q ss_pred eEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeeeEEEccCCCCeEEEEEcC
Q psy8748 1913 FTSCAVSSSGRYIFCGSDD------NNVHVWDLLKTTHNGVLSGHENRVTSISLSP 1962 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsD------GsIrIWDL~tge~l~tL~gHs~~VtsLaFSP 1962 (2004)
+....|+|||++|+..+.+ ..++++|+..+.. ..+. ..+.+...+|+|
T Consensus 379 ~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 379 VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 5678999999998775543 3688888865544 3443 244567777776
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.8e-09 Score=123.21 Aligned_cols=280 Identities=20% Similarity=0.291 Sum_probs=184.6
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----eEEEeeCCC------------CceEEEEEecCCC--EEEEe
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN-----KTQVIPLRS------------AWVMSVAFAQSGN--FVACG 1752 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk-----~l~ti~~Ht------------~~ItsLafSPdg~--~LaSG 1752 (2004)
.+-|.++.|...|.+||||..+|.|.++.-.... ....+..|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4578999999999999999999999999533222 223344443 3588899998764 67777
Q ss_pred ecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEE
Q psy8748 1753 GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1753 S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf 1832 (2004)
+.|.+|++|.+........... ....+....++.+... +.+..+-.+. ..+.......|.--|.++.+
T Consensus 105 tNdktiKlWKi~er~~k~~~~~-~~~~~~~~~~~~lr~p-----~~~~~~~~ve------a~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYN-LPEEGPPGTITSLRLP-----VEGRHDLEVE------ASPRRVYANAHTYHINSISV 172 (433)
T ss_pred cCCcceeeeeeecccccccccc-ccccCCCCccceeece-----eeccccceee------eeeeeeccccceeEeeeeee
Confidence 8899999999976432211000 0011111222222111 1111111111 01222334578888999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCe---EEEEEecCC-----CCeEEEEEeC-CCCEEEEEECCCeEEEEEccCCcee--
Q psy8748 1833 SPDGQYFVTGSVDKSCKLWDFREKK---CVQTFFGHE-----ADVNSVCFHP-SGLAFATGSEDKTARLFDIRADQQI-- 1901 (2004)
Q Consensus 1833 SPdg~~LaSGS~DGsIrIWDlrs~k---~I~tl~~h~-----s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~i-- 1901 (2004)
+.|+..++++. |=.|.+|++.-.. .+..++.+. .-|++..|+| ..+.|+..+..|+|++-|++.....
T Consensus 173 NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 173 NSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred cCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 99999888775 7789999986322 233334433 3588899999 4567888889999999999843221
Q ss_pred --EEEcCC----------CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCeeeEEEccCCC------------C--
Q psy8748 1902 --ATYLPP----------NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL-LKTTHNGVLSGHEN------------R-- 1954 (2004)
Q Consensus 1902 --~t~~~~----------~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL-~tge~l~tL~gHs~------------~-- 1954 (2004)
..+..+ .....|..+.|+++|+|+++-+. -+|++||+ ...+++.++..|.. .
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If 330 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF 330 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh
Confidence 111111 11235788999999999998643 58999999 56677777765532 2
Q ss_pred -eEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q psy8748 1955 -VTSISLSPNGMALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1955 -VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
-..++|+.++.+++||+.....++|+...|.
T Consensus 331 dKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 331 DKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred heeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2567899999999999999999999977653
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-08 Score=128.59 Aligned_cols=215 Identities=19% Similarity=0.128 Sum_probs=145.4
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeec---CCeEEEEECCCCceeEEeeccccCCeEEEE
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSG---DMKIVTWNLETGQRIHEVAQAHIGDVVSIS 1831 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~---DGtI~IWDl~tg~~i~~il~~h~~~ItsLa 1831 (2004)
..|.+||.+.. ..+.+..+...+....|++++ .++..+. +..|++||+.+++... + ....+...+..
T Consensus 184 ~~l~i~D~~g~-------~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l-~~~~g~~~~~~ 254 (433)
T PRK04922 184 YALQVADSDGY-------NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V-ASFRGINGAPS 254 (433)
T ss_pred EEEEEECCCCC-------CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e-ccCCCCccCce
Confidence 36888887542 123344556678888888665 4555543 3479999998887542 2 23344556789
Q ss_pred ECCCCCEEEE-EECCC--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-CCe--EEEEEccCCceeEEEc
Q psy8748 1832 LSPDGQYFVT-GSVDK--SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE-DKT--ARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1832 fSPdg~~LaS-GS~DG--sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~-DGt--IrIWDLrtgk~i~t~~ 1905 (2004)
|+|||+.++. .+.+| .|++||+.+++. ..+..+.......+|+|||+.++.++. +|. |+++|+.+++.....
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt- 332 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT- 332 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-
Confidence 9999997764 45555 599999988764 345455555667899999998887764 444 666777666543322
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECC---CeEEEE
Q psy8748 1906 PPNKNSGFTSCAVSSSGRYIFCGSDDN---NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWD---QFVKVW 1979 (2004)
Q Consensus 1906 ~~~~~s~ItsLafSPdG~~LaSGSsDG---sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D---GtIrIW 1979 (2004)
... ......+|+|+|++|+..+.++ .|.+||+.+++.. .+. +........|+|||++++..+.+ +.|.++
T Consensus 333 ~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 333 FQG--NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred cCC--CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 122 2344689999999998765443 6999999877654 333 33345677999999988877653 468888
Q ss_pred ECCCCe
Q psy8748 1980 QESNTI 1985 (2004)
Q Consensus 1980 dlstg~ 1985 (2004)
+.+++.
T Consensus 409 ~~~g~~ 414 (433)
T PRK04922 409 STDGRV 414 (433)
T ss_pred ECCCCc
Confidence 887653
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.4e-10 Score=133.77 Aligned_cols=196 Identities=16% Similarity=0.229 Sum_probs=135.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEee----CCCCceEEEEEecC-CCEEEEeecCCeEEEEEcCCCCCCCcceEEE
Q psy8748 1702 GDSRHCVSGSLDGKLIIWDTWTGNKTQVIP----LRSAWVMSVAFAQS-GNFVACGGMDNMCTVYDLNNRDSTGAAKVIR 1776 (2004)
Q Consensus 1702 PDG~~LASGS~DGtIrVWDl~Tgk~l~ti~----~Ht~~ItsLafSPd-g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~ 1776 (2004)
+++--++.|-.-|.|.+.|....+..+.+. .....|+|+.|-|. ...++++-.+|.+.+||......
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~-------- 254 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG-------- 254 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc--------
Confidence 566678888888999988866532222121 23478999999995 45677778899999998732110
Q ss_pred EEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1777 ELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK 1856 (2004)
Q Consensus 1777 sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~ 1856 (2004)
........+...+.+......+. .+...+... .-..+.|..++|+|||++|++.+.||.++|||..+.
T Consensus 255 -----~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~ 322 (636)
T KOG2394|consen 255 -----ATAPSYQALKDGDQFAILTSKSK------KTRNPVARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ 322 (636)
T ss_pred -----CCCCcccccCCCCeeEEeeeecc------ccCCcccee-EeccccccceeEcCCCceEEEEecCceEEEeeccHH
Confidence 00001111112222222211110 011122121 123347899999999999999999999999999988
Q ss_pred eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEc
Q psy8748 1857 KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVS 1919 (2004)
Q Consensus 1857 k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafS 1919 (2004)
+.+..++.--+...|++|+|||++|++|++|.-|.||.+...+.+..- ++|..+|..++|+
T Consensus 323 eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG--qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 323 ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG--QGHKSWVSVVAFD 383 (636)
T ss_pred HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec--cccccceeeEeec
Confidence 877776666778999999999999999999999999999988877665 6888999999998
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-08 Score=125.47 Aligned_cols=214 Identities=18% Similarity=0.159 Sum_probs=142.8
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEee---cCCeEEEEECCCCceeEEeeccccCCeEEEEE
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGS---GDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS---~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf 1832 (2004)
.|.+||.+... .+.+..+...+....|++++. ++..+ .+..|++||+.+++... + ....+.+....|
T Consensus 180 ~l~~~d~dg~~-------~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l-~~~~~~~~~~~~ 250 (429)
T PRK03629 180 ELRVSDYDGYN-------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V-ASFPRHNGAPAF 250 (429)
T ss_pred eEEEEcCCCCC-------CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-c-cCCCCCcCCeEE
Confidence 57777775432 122334556778889987664 44332 34579999998876432 1 223344567899
Q ss_pred CCCCCEEEEE-ECCC--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC-Ce--EEEEEccCCceeEEEcC
Q psy8748 1833 SPDGQYFVTG-SVDK--SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED-KT--ARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1833 SPdg~~LaSG-S~DG--sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D-Gt--IrIWDLrtgk~i~t~~~ 1906 (2004)
+|||+.|+.. +.+| .|++||+.+++... +..+...+....|+|||+.|+..+.+ |. |.++|+.++... .+..
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~ 328 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW 328 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec
Confidence 9999988865 4455 59999998876543 44445567889999999988777654 44 555566665443 2221
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCe---EEEEE
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDD---NNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQF---VKVWQ 1980 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsD---GsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGt---IrIWd 1980 (2004)
.........|+|||++|+..+.+ ..|++||+.+++.. .+.. ........|+|||++|+.++.|+. +.+|+
T Consensus 329 --~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 329 --EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred --CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 12334578899999999876543 35889999887644 3332 123456789999999999988764 77888
Q ss_pred CCCCe
Q psy8748 1981 ESNTI 1985 (2004)
Q Consensus 1981 lstg~ 1985 (2004)
++++.
T Consensus 405 ~~G~~ 409 (429)
T PRK03629 405 TDGRF 409 (429)
T ss_pred CCCCC
Confidence 86654
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=8e-09 Score=127.80 Aligned_cols=285 Identities=14% Similarity=0.170 Sum_probs=205.8
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc---------------eEEEeeCCCCceEEEEEecCCCEEEEeecCCe
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN---------------KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNM 1757 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk---------------~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGt 1757 (2004)
....|++|+....|+|+||.||.++|..+.+.. .-+++.+|.+.|.-+.|+.+.+.|-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 567899999999999999999999999765421 12356789999999999999999999999999
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
|.||-+-++...... ......+.|.+++|. ++..+.....||.|.+=.++.++...+-+++ .....+.|++|.
T Consensus 95 IiVWmlykgsW~EEM----iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEM----INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDL 168 (1189)
T ss_pred EEEEeeecccHHHHH----hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccH
Confidence 999998665321111 112235567788887 5666888888888887766544332222222 224578899999
Q ss_pred CEEEEEECCCeEEEEECCCC-------eEEEE----EecCCCCeEEEEEe--------CCCCEEEEEECCCeEEEEEccC
Q psy8748 1837 QYFVTGSVDKSCKLWDFREK-------KCVQT----FFGHEADVNSVCFH--------PSGLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~-------k~I~t----l~~h~s~ItsIafS--------Pdg~~LaSgS~DGtIrIWDLrt 1897 (2004)
+.++.+-..|.+.+||.... .+... +......|..+.|. |+...++++..+|.+.+..-.+
T Consensus 169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 98888888999999997532 11111 11222346667764 4777899999999999887655
Q ss_pred CceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEE
Q psy8748 1898 DQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD---------NNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALV 1968 (2004)
Q Consensus 1898 gk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD---------GsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~La 1968 (2004)
......+. ....+....|+++|..+++++.+ +.|++|. .-|+.+.+++.....|++++|-..|-.++
T Consensus 249 D~~Pvv~d---tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 249 DPEPVVVD---TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIA 324 (1189)
T ss_pred CCCCeEEe---cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEE
Confidence 55444442 22568889999999999998754 3567776 46788888988889999999988777666
Q ss_pred EEECCCeEEEEECCCCeEEE
Q psy8748 1969 TSSWDQFVKVWQESNTIVWK 1988 (2004)
Q Consensus 1969 SgS~DGtIrIWdlstg~l~k 1988 (2004)
.+- |+.|++=++...-.|.
T Consensus 325 ~Av-dsfiyfanIRP~ykWg 343 (1189)
T KOG2041|consen 325 IAV-DSFIYFANIRPEYKWG 343 (1189)
T ss_pred EEe-cceEEEEeecccceEE
Confidence 654 7777777776655554
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-08 Score=123.79 Aligned_cols=282 Identities=15% Similarity=0.181 Sum_probs=175.6
Q ss_pred eEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec-----------CCeEEEEEcC
Q psy8748 1696 NSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM-----------DNMCTVYDLN 1764 (2004)
Q Consensus 1696 tsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~-----------DGtIrVWDl~ 1764 (2004)
+-+.|||.|.||+|-..-| |.+|--.+...++.+. |.+ |.-+.|||+.++|++-+. ...+.|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 5689999999999998766 8899877766666665 544 889999999999998653 2579999999
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV 1844 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~ 1844 (2004)
++.....+... .+....-.-..|+-++.+++.-....|.+|+..+-..+. ...-....|....|+|.++.||--+.
T Consensus 291 tG~lkrsF~~~---~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld-~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 291 TGLLKRSFPVI---KSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLD-KKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred ccchhcceecc---CCCccccceEEeccCCceeEEeccceEEEEecCceeeec-ccccCCccccCcccCCCcceEEEEcc
Confidence 87544333332 122222334567766666665555778888865532221 11112234555666666555543221
Q ss_pred C---------------------------------------------------------CeEEEEECCCCeEEEEEecCCC
Q psy8748 1845 D---------------------------------------------------------KSCKLWDFREKKCVQTFFGHEA 1867 (2004)
Q Consensus 1845 D---------------------------------------------------------GsIrIWDlrs~k~I~tl~~h~s 1867 (2004)
. ..+.|+.++....-........
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke 446 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKE 446 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecch
Confidence 1 0122222221111111112345
Q ss_pred CeEEEEEeCCCCEEEEEEC---CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCC
Q psy8748 1868 DVNSVCFHPSGLAFATGSE---DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS---DDNNVHVWDLLK 1941 (2004)
Q Consensus 1868 ~ItsIafSPdg~~LaSgS~---DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS---sDGsIrIWDL~t 1941 (2004)
.|...+|-|.|+.+++-+. ..++.+|.+.+......+...-.....+.+.|+|.|++++++. ..|.+.++|+..
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 6778899999998877654 3468888877322111111111124567899999999998764 468899999875
Q ss_pred CeeeEEEccCCCCeEEEEEcCCCCEEEEEEC------CCeEEEEECCCC
Q psy8748 1942 TTHNGVLSGHENRVTSISLSPNGMALVTSSW------DQFVKVWQESNT 1984 (2004)
Q Consensus 1942 ge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~------DGtIrIWdlstg 1984 (2004)
..+..+-.......+.+.|.|.|+|+++++. |..-++|++.+.
T Consensus 527 a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 527 ADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred hhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 4443333333345688999999999999875 445677776654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-07 Score=118.16 Aligned_cols=269 Identities=14% Similarity=0.119 Sum_probs=176.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG 1783 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~ 1783 (2004)
+..+++++.+|.+..+|..+|+.+.............. .++..+++++.+|.+..+|..+++...... . .+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~------~-~~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAK------L-SS 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeec------c-Cc
Confidence 56788888899999999999999887765543222222 247788888899999999997764322111 1 11
Q ss_pred ceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccC----CeEEEEECCCCCEEEEEECCCeEEEEECCCCeEE
Q psy8748 1784 FLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIG----DVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCV 1859 (2004)
Q Consensus 1784 ~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~----~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I 1859 (2004)
.+.+.....++.++.++.+|.++.||.++|+.+.+....... ...+... .+..++.+..+|.+..+|.++++.+
T Consensus 136 ~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 136 EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence 122212224567888889999999999999877554221110 0011112 1346788888999999999999876
Q ss_pred EEEecCCC----C---eEEEEEeC--CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1860 QTFFGHEA----D---VNSVCFHP--SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1860 ~tl~~h~s----~---ItsIafSP--dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
........ . ...+.-+| .+..+++++.+|.++.||..+++......... ..... ..+..+++++.
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~--~~~~~vyv~~~ 287 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS----YQGPA--VDDNRLYVTDA 287 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC----ccCce--EeCCEEEEECC
Confidence 54321100 0 00111111 34578888889999999999998877664221 11122 25678888889
Q ss_pred CCeEEEEECCCCeeeEEEccCCC-CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1931 DNNVHVWDLLKTTHNGVLSGHEN-RVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1931 DGsIrIWDL~tge~l~tL~gHs~-~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
+|.++.+|..+++.+........ ....... .+..+++++.||.|++||..+|+....++
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 99999999999988765532211 2222222 46689999999999999999887654444
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-08 Score=129.72 Aligned_cols=223 Identities=15% Similarity=0.096 Sum_probs=143.5
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCC---CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEE-EeecCCeEEE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLD---GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVA-CGGMDNMCTV 1760 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~D---GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~La-SGS~DGtIrV 1760 (2004)
.+.+..|.+.+.+.+|+|||+.|+..+.+ ..|++||+.+|+... +....+.+.+..|+|||+.++ +.+.+|...+
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence 34556788899999999999999877643 459999999887654 333345567899999999876 4677888777
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEee-cCCeEEEE--ECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGS-GDMKIVTW--NLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS-~DGtI~IW--Dl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
|.++... .....+..+........|++++. ++..+ .+|...+| +..++... .+. .........+|+|+|
T Consensus 267 y~~d~~~-----~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt-~~g~~~~~~~~SpDG 339 (427)
T PRK02889 267 YTVNADG-----SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVT-FTGSYNTSPRISPDG 339 (427)
T ss_pred EEEECCC-----CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEe-cCCCCcCceEECCCC
Confidence 7765321 11233344444556677886654 55444 34555555 44554432 221 122334567899999
Q ss_pred CEEEEEECCC---eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC---eEEEEEccCCceeEEEcCCCCC
Q psy8748 1837 QYFVTGSVDK---SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK---TARLFDIRADQQIATYLPPNKN 1910 (2004)
Q Consensus 1837 ~~LaSGS~DG---sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG---tIrIWDLrtgk~i~t~~~~~~~ 1910 (2004)
++++..+.++ .|.+||+.+++... +.. ........|+|||+.++.++.++ .+.+.+.. +.....+. ...
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~--~~~ 414 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLS--VQG 414 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEee--cCC
Confidence 9998877654 59999998876443 322 23346789999999988877544 35555663 44444442 222
Q ss_pred CCeEEEEEcC
Q psy8748 1911 SGFTSCAVSS 1920 (2004)
Q Consensus 1911 s~ItsLafSP 1920 (2004)
+.+...+|+|
T Consensus 415 g~~~~p~wsp 424 (427)
T PRK02889 415 GDVREPSWGP 424 (427)
T ss_pred CCCCCCccCC
Confidence 4456667776
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-08 Score=119.35 Aligned_cols=244 Identities=14% Similarity=0.171 Sum_probs=164.2
Q ss_pred CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCC
Q psy8748 1735 AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLET 1812 (2004)
Q Consensus 1735 ~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~t 1812 (2004)
..+..++|++.-..++++..|..|++|+-... ... .-.......+++++|-+- ..+++|+. +.|++|....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst----~pt--~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~ 171 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST----CPT--KLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSR 171 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC----CCc--eecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCc
Confidence 34778899998888899999999999987542 111 112234567899999853 34555555 5689997653
Q ss_pred CceeEE------------eeccccCCeEEEEECCCCCEEEEEEC-CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCC
Q psy8748 1813 GQRIHE------------VAQAHIGDVVSISLSPDGQYFVTGSV-DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL 1879 (2004)
Q Consensus 1813 g~~i~~------------il~~h~~~ItsLafSPdg~~LaSGS~-DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~ 1879 (2004)
.-.... ........|+++.|.+||..+++++. |..|.|||..++..+.......+.+.-+.|+|||.
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD 251 (445)
T ss_pred ccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence 211100 11122367999999999999998874 56899999999887665545567788999999999
Q ss_pred EEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----Ce-----------e
Q psy8748 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK----TT-----------H 1944 (2004)
Q Consensus 1880 ~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t----ge-----------~ 1944 (2004)
++++++-|+..++|+............. .+.|...+|+|+|++|..... |.-++|.+.. +. .
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~erw~lg--sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTKERWILG--SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred EEEEecccceeeeehhcccceecceecc--CCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeee
Confidence 9999999999999965433222222211 237899999999998776543 3344444321 00 0
Q ss_pred eEEEc-----c----CCCCeEEEEEcCCCCEEEEEECCC--------eEEEEECCCCeEEE
Q psy8748 1945 NGVLS-----G----HENRVTSISLSPNGMALVTSSWDQ--------FVKVWQESNTIVWK 1988 (2004)
Q Consensus 1945 l~tL~-----g----Hs~~VtsLaFSPDg~~LaSgS~DG--------tIrIWdlstg~l~k 1988 (2004)
+..+. . -.+++.+++|+|.|.+||+.-..+ .|.+||....-..+
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve 389 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE 389 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence 00110 1 246789999999999999875433 46677776554433
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5e-07 Score=123.17 Aligned_cols=290 Identities=13% Similarity=0.130 Sum_probs=183.9
Q ss_pred cccceeEEEEeCCCCEEEEEeC---C---CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec---CCeEEEE
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSL---D---GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM---DNMCTVY 1761 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~---D---GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~---DGtIrVW 1761 (2004)
+.+.-..|+|-.||.|+|+.+- + ..++||+ +.|....+-..-.+--.+++|.|.|+++++... ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 5566778999999999998764 2 5799998 457655554444444567899999999998764 3566677
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEe--eccccCCeEEEEECCC-CCE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV--AQAHIGDVVSISLSPD-GQY 1838 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~i--l~~h~~~ItsLafSPd-g~~ 1838 (2004)
.-+..+ .+............+..+.|+.++.+++......|.+|-..+-....+. .......+..+.|+|. ...
T Consensus 287 ErNGLr---hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~ 363 (928)
T PF04762_consen 287 ERNGLR---HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLR 363 (928)
T ss_pred ecCCcE---eeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCE
Confidence 654321 1111112234566789999997777655555556999998876643222 2233344556999995 445
Q ss_pred EEEEECCCeEEEEECC----CC--------eEEEEEe-----------------------cCCCCeEEEEEeCCCCEEEE
Q psy8748 1839 FVTGSVDKSCKLWDFR----EK--------KCVQTFF-----------------------GHEADVNSVCFHPSGLAFAT 1883 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlr----s~--------k~I~tl~-----------------------~h~s~ItsIafSPdg~~LaS 1883 (2004)
|.+++.+|.+..+++. .+ ..+..+. ....+|.+++|++++..+++
T Consensus 364 L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av 443 (928)
T PF04762_consen 364 LHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV 443 (928)
T ss_pred EEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE
Confidence 7777776776655432 11 1111111 23567999999999988999
Q ss_pred EECCCeEEEEEccCCcee--------EEEcC--------CCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCe-
Q psy8748 1884 GSEDKTARLFDIRADQQI--------ATYLP--------PNKNSGFTSCAVSSSGRYIFCGSDD---NNVHVWDLLKTT- 1943 (2004)
Q Consensus 1884 gS~DGtIrIWDLrtgk~i--------~t~~~--------~~~~s~ItsLafSPdG~~LaSGSsD---GsIrIWDL~tge- 1943 (2004)
-..||.|.+|........ ..+.. ......+..++|..+...++..+.+ +.+.++++...+
T Consensus 444 l~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 523 (928)
T PF04762_consen 444 LTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSEN 523 (928)
T ss_pred EECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCC
Confidence 999999999985432211 11111 1123457788888887777766654 678888874332
Q ss_pred --eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1944 --HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1944 --~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
.......-.+.+..+...++...++.-..||.+...+..+.
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 524 SASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred ceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 23333333555666666666555666677888886655543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.8e-08 Score=120.39 Aligned_cols=232 Identities=17% Similarity=0.135 Sum_probs=152.4
Q ss_pred CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC---CeEEEEEcCCCCCCCcceEEEEEecCccceeeeE
Q psy8748 1713 DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD---NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR 1789 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D---GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssva 1789 (2004)
...|.++|.. +...+.+..+...+.+..|+|+|+.++.+..+ ..|++|++.++. . ..+..+........
T Consensus 169 ~~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~----~---~~~~~~~~~~~~~~ 240 (417)
T TIGR02800 169 RYELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ----R---EKVASFPGMNGAPA 240 (417)
T ss_pred cceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC----E---EEeecCCCCccceE
Confidence 3468888875 44445555566778999999999999887654 479999987642 1 12223344555677
Q ss_pred EeCCC-cEE-EeecC--CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC-C--eEEEEECCCCeEEEEE
Q psy8748 1790 FIDDT-TLL-TGSGD--MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD-K--SCKLWDFREKKCVQTF 1862 (2004)
Q Consensus 1790 fsdd~-~Ll-SgS~D--GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D-G--sIrIWDlrs~k~I~tl 1862 (2004)
|++++ .++ +.+.+ ..|++||+.++... .+ ..+........|+|+|+.++.++.. | .|+++|+.+++. ..+
T Consensus 241 ~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l 317 (417)
T TIGR02800 241 FSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RL-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRL 317 (417)
T ss_pred ECCCCCEEEEEECCCCCccEEEEECCCCCEE-EC-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEe
Confidence 88665 344 34444 36999999877643 22 2344445577899999988776643 3 588888877664 344
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEECCC---eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCC---eEEE
Q psy8748 1863 FGHEADVNSVCFHPSGLAFATGSEDK---TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN---NVHV 1936 (2004)
Q Consensus 1863 ~~h~s~ItsIafSPdg~~LaSgS~DG---tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDG---sIrI 1936 (2004)
..+...+....|+|+|++++.++.++ .|.+||+.++... .+... .......|+|+|++|+.++.++ .+++
T Consensus 318 ~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~ 393 (417)
T TIGR02800 318 TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT---GLDESPSFAPNGRMILYATTRGGRGVLGL 393 (417)
T ss_pred ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEE
Confidence 44556677889999999999888776 7999998875443 22211 1234568999999988877654 3555
Q ss_pred EECCCCeeeEEEccCCCCeEEEEE
Q psy8748 1937 WDLLKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1937 WDL~tge~l~tL~gHs~~VtsLaF 1960 (2004)
.+. ++.....+..+.+.+...+|
T Consensus 394 ~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 394 VST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEC-CCceeeECCCCCCCcCCCCC
Confidence 554 44445555444455555544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.7e-09 Score=134.76 Aligned_cols=275 Identities=15% Similarity=0.234 Sum_probs=187.2
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC-CCCceE---EEEEecCCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL-RSAWVM---SVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~-Ht~~It---sLafSPdg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
-+++++..+-. +||..|. .-.|.+||+..+..+..+.. +.-.+. ... .-.+..++++..-+.+..=+...
T Consensus 7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~-~l~~~~~v~~~~~~~v~~~~~~~-- 80 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKV-KLLSGKIVTCAKSDEVYVKEASN-- 80 (967)
T ss_pred cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccc-eeccceEEEEEeecceeecchhh--
Confidence 34555555543 5666553 45799999998876654321 111111 000 00133444444333333322211
Q ss_pred CCCcceEEEEEecCccceeeeEE-eCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeE---EEEECCCCCEEEEEE
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRF-IDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVV---SISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvaf-sdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~It---sLafSPdg~~LaSGS 1843 (2004)
.. .....+.+....+ -.+..++.++.+..+.+||...+....++......... -+-++++.-++++|+
T Consensus 81 -----~~---~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 81 -----QI---IERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred -----hh---hhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecc
Confidence 11 1111222222222 25567888999999999999887766555322221111 223455666899999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC
Q psy8748 1844 VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~ 1923 (2004)
.-|.|.+|+....+.-..+.+|++.|.++.|+-||.++++.|.|..+++|++.+.+... ...-+|...+..++|.|+
T Consensus 153 v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred ccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccc--
Confidence 99999999987444334678999999999999999999999999999999999887765 222467788999999998
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEccCCC-CeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1924 YIFCGSDDNNVHVWDLLKTTHNGVLSGHEN-RVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1924 ~LaSGSsDGsIrIWDL~tge~l~tL~gHs~-~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
.+++++.|.+.++|+. +++.+..+.+|.+ .|..++..++....+|++.||.+++|++.+.
T Consensus 230 ~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999999999975 5555667777754 6999999999999999999999999998764
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-07 Score=116.82 Aligned_cols=251 Identities=16% Similarity=0.220 Sum_probs=163.6
Q ss_pred eEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCC--EEEE-----eecCCeEEEEEcCCCCC
Q psy8748 1696 NSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN--FVAC-----GGMDNMCTVYDLNNRDS 1768 (2004)
Q Consensus 1696 tsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~--~LaS-----GS~DGtIrVWDl~t~~~ 1768 (2004)
++..|+.|..+.|=- ..+.+.+|+..+.+... -+.|...|..+.++|.+. .+++ +|.-+.+++|.+.....
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 588899888754422 23579999987743322 244677899999998743 4443 45667899998863211
Q ss_pred CCcceEEEEEecCccceeeeEEeCCC--cEEEeec-----------CCeEEEEECCCCceeEEeeccccCCeEEEEECCC
Q psy8748 1769 TGAAKVIRELLGYEGFLSSCRFIDDT--TLLTGSG-----------DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD 1835 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~-----------DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd 1835 (2004)
. .....+.+. ...-..+.|...+ .|+.++. ..+++++++...... +.....++|.++.|+++
T Consensus 207 ~-~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~--V~L~k~GPVhdv~W~~s 281 (566)
T KOG2315|consen 207 H-QPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS--VPLLKEGPVHDVTWSPS 281 (566)
T ss_pred c-chhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE--EecCCCCCceEEEECCC
Confidence 1 111111111 1122234454322 2332222 246888888743443 22355789999999999
Q ss_pred CCEEEEE--ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEEccCCceeEEEcCCCCC
Q psy8748 1836 GQYFVTG--SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED---KTARLFDIRADQQIATYLPPNKN 1910 (2004)
Q Consensus 1836 g~~LaSG--S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D---GtIrIWDLrtgk~i~t~~~~~~~ 1910 (2004)
++.|++. ..-..+.|||++ +.++..+ ..++=+++-|+|.|++++.+|-+ |.|.+||+.+.+++..+...
T Consensus 282 ~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--- 355 (566)
T KOG2315|consen 282 GREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--- 355 (566)
T ss_pred CCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC---
Confidence 9876654 456689999986 4444444 46777899999999999888764 78999999998888777433
Q ss_pred CCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEccCCCCeEEEEEcC
Q psy8748 1911 SGFTSCAVSSSGRYIFCGSD------DNNVHVWDLLKTTHNGVLSGHENRVTSISLSP 1962 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGSs------DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSP 1962 (2004)
..+-+.|+|||.++++++. |+.++||+. +|..+....-.. ....+.|-|
T Consensus 356 -~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 356 -NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRP 410 (566)
T ss_pred -CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH-hHhheeeee
Confidence 3578999999999999875 677999997 555544322111 566677765
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.8e-07 Score=109.64 Aligned_cols=267 Identities=15% Similarity=0.207 Sum_probs=168.7
Q ss_pred ceeEEEEeCCCCEEEEEeC----CCeEEEEECCCC--c--eEEEeeCCCCceEEEEEecCCCEEEEeec-CCeEEEEEcC
Q psy8748 1694 KVNSVHYSGDSRHCVSGSL----DGKLIIWDTWTG--N--KTQVIPLRSAWVMSVAFAQSGNFVACGGM-DNMCTVYDLN 1764 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~----DGtIrVWDl~Tg--k--~l~ti~~Ht~~ItsLafSPdg~~LaSGS~-DGtIrVWDl~ 1764 (2004)
....++++|++++|.++.. +|.|..|++... + .+............++++|++++++++.. +|.|.+++++
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 4457889999999988876 578999987654 3 33334434455678999999999988864 7999999998
Q ss_pred CCCCCCcceEEEEEe--------cCccceeeeEEeCCCc-EEEe-ecCCeEEEEECCCCc--ee--EEeeccccCCeEEE
Q psy8748 1765 NRDSTGAAKVIRELL--------GYEGFLSSCRFIDDTT-LLTG-SGDMKIVTWNLETGQ--RI--HEVAQAHIGDVVSI 1830 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~--------gh~~~Vssvafsdd~~-LlSg-S~DGtI~IWDl~tg~--~i--~~il~~h~~~ItsL 1830 (2004)
............... .......++.+.+++. +++. -....|.+|+++... .. ..+..........+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 642111111111110 1234556778886654 4443 345689999997665 21 12223455668899
Q ss_pred EECCCCCEEEEEE-CCCeEEEEECC--CCeE--EEEEecC------CCCeEEEEEeCCCCEEEEEEC-CCeEEEEEcc--
Q psy8748 1831 SLSPDGQYFVTGS-VDKSCKLWDFR--EKKC--VQTFFGH------EADVNSVCFHPSGLAFATGSE-DKTARLFDIR-- 1896 (2004)
Q Consensus 1831 afSPdg~~LaSGS-~DGsIrIWDlr--s~k~--I~tl~~h------~s~ItsIafSPdg~~LaSgS~-DGtIrIWDLr-- 1896 (2004)
+|+|+++++++.. .++.|.+|++. ++.. +..+... ......|+++|||++++++.. ++.|.+|++.
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 9999999887765 46789999887 4432 2222211 125788999999999887764 5679999994
Q ss_pred CCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC--CCCeeeEEEc-cCCCCeEEEEE
Q psy8748 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDL--LKTTHNGVLS-GHENRVTSISL 1960 (2004)
Q Consensus 1897 tgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL--~tge~l~tL~-gHs~~VtsLaF 1960 (2004)
+++....-...........++++|+|++|+++.. ++.|.+|++ .+|.....-. ..-....||.|
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 2333221111222344789999999999998874 578999876 5666554432 23445666665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-07 Score=118.74 Aligned_cols=233 Identities=13% Similarity=0.058 Sum_probs=151.4
Q ss_pred eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC---CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1715 KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD---NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1715 tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D---GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.|.++|...+ ..+.+..+...+....|+|||+.|+..+.+ ..|.+|++.++. .. .+....+......|+
T Consensus 180 ~l~~~d~~g~-~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~----~~---~l~~~~g~~~~~~~S 251 (430)
T PRK00178 180 TLQRSDYDGA-RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR----RE---QITNFEGLNGAPAWS 251 (430)
T ss_pred EEEEECCCCC-CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC----EE---EccCCCCCcCCeEEC
Confidence 5777887544 345555677789999999999998876544 368888987643 11 222233344567888
Q ss_pred CCC-cEE-EeecCC--eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEec
Q psy8748 1792 DDT-TLL-TGSGDM--KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV-DK--SCKLWDFREKKCVQTFFG 1864 (2004)
Q Consensus 1792 dd~-~Ll-SgS~DG--tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~-DG--sIrIWDlrs~k~I~tl~~ 1864 (2004)
+++ .++ +...+| .|++||+.++... .+ ..+........|+|||+.++..+. +| .|+++|+.+++..... .
T Consensus 252 pDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~l-t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~ 328 (430)
T PRK00178 252 PDGSKLAFVLSKDGNPEIYVMDLASRQLS-RV-TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-F 328 (430)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCeE-Ec-ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-c
Confidence 655 444 344444 6889999887654 22 334455667899999998877664 33 5888888777643322 2
Q ss_pred CCCCeEEEEEeCCCCEEEEEECC-C--eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEE
Q psy8748 1865 HEADVNSVCFHPSGLAFATGSED-K--TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD---NNVHVWD 1938 (2004)
Q Consensus 1865 h~s~ItsIafSPdg~~LaSgS~D-G--tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD---GsIrIWD 1938 (2004)
.........|+|+|++++..+.+ | .|.+||+.+++... +.... ......|+|+|++++..+.+ +.+++++
T Consensus 329 ~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 329 VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVS 404 (430)
T ss_pred CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 22334457899999998877653 3 58889998776533 22111 12245899999999877654 3577778
Q ss_pred CCCCeeeEEEccCCCCeEEEEEcCC
Q psy8748 1939 LLKTTHNGVLSGHENRVTSISLSPN 1963 (2004)
Q Consensus 1939 L~tge~l~tL~gHs~~VtsLaFSPD 1963 (2004)
+. +.....+..+.+.+...+|+|-
T Consensus 405 ~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 405 IN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CC-CCceEECcCCCCCcCCCccCCC
Confidence 74 4444455555667777888763
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=145.33 Aligned_cols=201 Identities=19% Similarity=0.283 Sum_probs=164.6
Q ss_pred cccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC-CCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL-RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
.++.|-..|.++.=+|...+.+||+.||.|++|....++.+..+.. ....|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 3455677888998899999999999999999999999988877653 34789999999999999999999999999986
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCCCcEEEe---ecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTG---SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSg---S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
.+.......|........|.. ..++++ +.++.+.+||..-......+...|.+.++++++-|..+.|++|
T Consensus 2282 ------pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2282 ------PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred ------CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 245566677888888888876 444444 3578999999764433333347899999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEc
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~ 1905 (2004)
|.+|.|++||++..+.++++.. ++ ...+|++|+..|.++||++.....+.++.
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999998887766654 44 56689999999999999998877766663
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-07 Score=117.74 Aligned_cols=263 Identities=19% Similarity=0.174 Sum_probs=168.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEE-EEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC
Q psy8748 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMS-VAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY 1781 (2004)
Q Consensus 1703 DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~Its-LafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh 1781 (2004)
++..++.++.+|.++.+|..+|+.+........ +.+ ... .+..++.++.+|.+..||.++++..............
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 356788888899999999999999887654332 221 112 3556777888999999999876432221110000000
Q ss_pred ccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccC---C---eEEEEECC--CCCEEEEEECCCeEEEEEC
Q psy8748 1782 EGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIG---D---VVSISLSP--DGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1782 ~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~---~---ItsLafSP--dg~~LaSGS~DGsIrIWDl 1853 (2004)
... ..... .++.++++..+|.+..+|..+|+........... . ...+.-+| .+..+++++.+|.++.||.
T Consensus 181 ~~~-~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 181 RGS-ASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred cCC-CCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 000 11112 2356788888999999999999876543211110 0 00011111 3567888889999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCe
Q psy8748 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNN 1933 (2004)
Q Consensus 1854 rs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGs 1933 (2004)
.+++.+...... ...... ..+..+++++.+|.+..+|..+++.+........ ........ .+..+++++.+|.
T Consensus 259 ~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~-~~~ssp~i--~g~~l~~~~~~G~ 331 (377)
T TIGR03300 259 RSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKY-RQLTAPAV--VGGYLVVGDFEGY 331 (377)
T ss_pred CCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccC-CccccCEE--ECCEEEEEeCCCE
Confidence 999877655421 111222 2456788888999999999999988766522111 11222222 4678999999999
Q ss_pred EEEEECCCCeeeEEEccCCCCeEE-EEEcCCCCEEEEEECCCeEEEE
Q psy8748 1934 VHVWDLLKTTHNGVLSGHENRVTS-ISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1934 IrIWDL~tge~l~tL~gHs~~Vts-LaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
|+++|..+++.+..+..+...+.. ..+. + ..|+.++.||.|+.|
T Consensus 332 l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 332 LHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 999999999999988866654332 2332 3 358899999998876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.5e-08 Score=114.49 Aligned_cols=231 Identities=19% Similarity=0.275 Sum_probs=146.1
Q ss_pred cceeEEEEeCCCC--EEEEEeCCCeEEEEECCCCceEE-Ee----eCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1693 NKVNSVHYSGDSR--HCVSGSLDGKLIIWDTWTGNKTQ-VI----PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~--~LASGS~DGtIrVWDl~Tgk~l~-ti----~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
..|+.+.|.++++ .++..+.|.+|++|.+....... .. .+..+.|.++.. .+.+..+-.+
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~~v------- 151 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDLEV------- 151 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeec------eeecccccee-------
Confidence 4677888887665 56677789999999876543222 00 111122222211 1111111100
Q ss_pred CCCCCcceEEEE-EecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeec-------cccCCeEEEEECC-CC
Q psy8748 1766 RDSTGAAKVIRE-LLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ-------AHIGDVVSISLSP-DG 1836 (2004)
Q Consensus 1766 ~~~~~~~k~i~s-l~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~-------~h~~~ItsLafSP-dg 1836 (2004)
...+.+. -..|.-.+.++.+..+...+...+|-.|.+|+++-......+.. .-..-|++..||| ..
T Consensus 152 -----ea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c 226 (433)
T KOG1354|consen 152 -----EASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC 226 (433)
T ss_pred -----eeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc
Confidence 1111111 23467778889998888878888899999999875443333321 1233588899999 46
Q ss_pred CEEEEEECCCeEEEEECCCCeE----EEEEe------------cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEc-cCCc
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKKC----VQTFF------------GHEADVNSVCFHPSGLAFATGSEDKTARLFDI-RADQ 1899 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k~----I~tl~------------~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDL-rtgk 1899 (2004)
+.|+-.+..|+|++.|++.... .+.+. +--..|..+.|+++|+++++-.. -+|++||+ ...+
T Consensus 227 n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~ 305 (433)
T KOG1354|consen 227 NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK 305 (433)
T ss_pred cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC
Confidence 7888888999999999984321 11111 12245788999999999987653 58999999 4455
Q ss_pred eeEEEcCCCC----------CCC---eEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q psy8748 1900 QIATYLPPNK----------NSG---FTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942 (2004)
Q Consensus 1900 ~i~t~~~~~~----------~s~---ItsLafSPdG~~LaSGSsDGsIrIWDL~tg 1942 (2004)
++.++..+.. ... -..++|+-++.++++|+....+++|++..|
T Consensus 306 pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 306 PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred cceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 5555532221 111 245789999999999999999999996443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-07 Score=119.75 Aligned_cols=232 Identities=17% Similarity=0.138 Sum_probs=148.3
Q ss_pred eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC---CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1715 KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD---NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1715 tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D---GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.|.++|..... .+.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++ ...+ ....+......|+
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~----~~~l---t~~~g~~~~~~wS 270 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV----REKV---TSFPGINGAPRFS 270 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC----eEEe---cCCCCCcCCeeEC
Confidence 67777864433 34555567788999999999988876543 258888886542 1122 2222333456788
Q ss_pred CCCc-EE-EeecCC--eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEec
Q psy8748 1792 DDTT-LL-TGSGDM--KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV-DK--SCKLWDFREKKCVQTFFG 1864 (2004)
Q Consensus 1792 dd~~-Ll-SgS~DG--tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~-DG--sIrIWDlrs~k~I~tl~~ 1864 (2004)
+++. ++ +.+.+| .|++||+.+++.. .+ ..+.......+|+|||+.++..+. +| .|+++|+.+++... +..
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~l-t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~ 347 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIATKALT-RI-TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTF 347 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCCCCeE-EC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Eec
Confidence 6554 44 345556 4888898877653 22 234455677899999998877654 33 47777887776433 222
Q ss_pred CCCCeEEEEEeCCCCEEEEEEC-CC--eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEE
Q psy8748 1865 HEADVNSVCFHPSGLAFATGSE-DK--TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD-N--NVHVWD 1938 (2004)
Q Consensus 1865 h~s~ItsIafSPdg~~LaSgS~-DG--tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD-G--sIrIWD 1938 (2004)
........+|+|||++++..+. ++ .|.++|+.+++... +.... ......|+|+|++|+..+.+ | .+++++
T Consensus 348 ~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~ 423 (448)
T PRK04792 348 EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVS 423 (448)
T ss_pred CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 2233445789999999877655 34 45667877765432 22111 11244799999988776543 3 377788
Q ss_pred CCCCeeeEEEccCCCCeEEEEEcC
Q psy8748 1939 LLKTTHNGVLSGHENRVTSISLSP 1962 (2004)
Q Consensus 1939 L~tge~l~tL~gHs~~VtsLaFSP 1962 (2004)
. +|.....+..+.+.+...+|+|
T Consensus 424 ~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 424 I-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred C-CCCceEECcCCCCCcCCCccCC
Confidence 6 6666677766677788888887
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-07 Score=117.46 Aligned_cols=244 Identities=14% Similarity=0.184 Sum_probs=169.9
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe--eCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI--PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti--~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
-.+|.||.+.|.-+.|+.+.+.|-|...+|.|.||-+-.|.-.... ....+.|.+++|..+|..++....||.|.|=.
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 4578999999999999999999999999999999998877654332 33567799999999999999999999998887
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCc-------eeE---EeeccccCCeEEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQ-------RIH---EVAQAHIGDVVSIS 1831 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~-------~i~---~il~~h~~~ItsLa 1831 (2004)
++..+..+ +.+. ......+.|+.+. .++.+-.+|.+.+||....- +.. ..+......|..+.
T Consensus 144 vdGNRIwg-----KeLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 144 VDGNRIWG-----KELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE 216 (1189)
T ss_pred eccceecc-----hhcc--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence 76543111 1111 1223466777554 46777788999999976431 111 11222233466666
Q ss_pred EC--------CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC---------eEEEEE
Q psy8748 1832 LS--------PDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK---------TARLFD 1894 (2004)
Q Consensus 1832 fS--------Pdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG---------tIrIWD 1894 (2004)
|. |+...++++...|.+.|..-.+...-..+ .....+..+.|+++|..+++++.+. .|.+|.
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys 295 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS 295 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE-ecccEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence 64 47789999999999988765433222222 2347788999999999999988643 466665
Q ss_pred ccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1895 IRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1895 Lrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
.- |+...++..++ ..|+.++|-..|-.++.+ .|+.|++=+++
T Consensus 296 p~-G~i~gtlkvpg--~~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 296 PY-GHIVGTLKVPG--SCITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred cc-hhheEEEecCC--ceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 43 66666665444 678999998877776665 45666655543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-08 Score=111.07 Aligned_cols=119 Identities=22% Similarity=0.393 Sum_probs=94.2
Q ss_pred cccCCeEEEEECCCCCEEEEE--ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEEcc
Q psy8748 1822 AHIGDVVSISLSPDGQYFVTG--SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE---DKTARLFDIR 1896 (2004)
Q Consensus 1822 ~h~~~ItsLafSPdg~~LaSG--S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~---DGtIrIWDLr 1896 (2004)
...++|.+++|+|+|+.|++. ..++.|.+||++ ++.+..+. ...++.+.|+|+|+++++++. .|.|.+||.+
T Consensus 57 ~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 345679999999999987654 356799999996 66666653 567889999999999999875 4679999999
Q ss_pred CCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEE
Q psy8748 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD------DNNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1897 tgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs------DGsIrIWDL~tge~l~tL 1948 (2004)
+.+.+.... + ..++.++|+|+|+++++++. |+.++||+. .|+.+...
T Consensus 134 ~~~~i~~~~---~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 134 KKKKISTFE---H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CCEEeeccc---c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 888877653 2 34789999999999998875 678999997 46655443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-06 Score=104.23 Aligned_cols=263 Identities=14% Similarity=0.086 Sum_probs=167.0
Q ss_pred CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec----------CCeEEEEEcCCCCCCCcceEEEEEecC--
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM----------DNMCTVYDLNNRDSTGAAKVIRELLGY-- 1781 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~----------DGtIrVWDl~t~~~~~~~k~i~sl~gh-- 1781 (2004)
++|.+.|..+++.+..+.....+- .+ ++||++.++++.. ++.|.+||..+.+ ....+.-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~------~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL------PIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc------EEeEEccCCC
Confidence 899999999999999887654443 34 9999998877665 7899999998753 33333221
Q ss_pred -----ccceeeeEEeCCC-cEEEee-c-CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1782 -----EGFLSSCRFIDDT-TLLTGS-G-DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1782 -----~~~Vssvafsdd~-~LlSgS-~-DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
........+++++ .+++.. . +..|.++|+.+++.+..+..+ +...-...+.+..+ +-+.||......+
T Consensus 99 p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp--~~~~vy~t~e~~~~--~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP--DCYHIFPTANDTFF--MHCRDGSLAKVGY 174 (352)
T ss_pred chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC--CCcEEEEecCCccE--EEeecCceEEEEe
Confidence 1222355566555 455444 3 789999999999988766432 22222222222222 2233554444333
Q ss_pred CC-CeE-EEE---EecCCCCeE-EEEEeC-CCCEEEEEECCCeEEEEEccCC-----ceeEEEcCC-----CCCCCeEEE
Q psy8748 1854 RE-KKC-VQT---FFGHEADVN-SVCFHP-SGLAFATGSEDKTARLFDIRAD-----QQIATYLPP-----NKNSGFTSC 1916 (2004)
Q Consensus 1854 rs-~k~-I~t---l~~h~s~It-sIafSP-dg~~LaSgS~DGtIrIWDLrtg-----k~i~t~~~~-----~~~s~ItsL 1916 (2004)
.+ ++. ... +.....++. .-.|.+ +|.++++... |+|.+.|+... .....+... -..+.+.-+
T Consensus 175 d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 175 GTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred cCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 22 211 111 111011110 004455 8888877766 99999996432 222222111 122344559
Q ss_pred EEcCCCCEEEEEeC----------CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC-EEEEEE-CCCeEEEEECCCC
Q psy8748 1917 AVSSSGRYIFCGSD----------DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM-ALVTSS-WDQFVKVWQESNT 1984 (2004)
Q Consensus 1917 afSPdG~~LaSGSs----------DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~-~LaSgS-~DGtIrIWdlstg 1984 (2004)
+++++|+.+++... .+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.++|..++
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 99999999888532 25799999999999998864 46899999999999 887666 5788999999999
Q ss_pred eEEEEE
Q psy8748 1985 IVWKVL 1990 (2004)
Q Consensus 1985 ~l~k~I 1990 (2004)
+..+.+
T Consensus 333 k~i~~i 338 (352)
T TIGR02658 333 KELSSV 338 (352)
T ss_pred eEEeee
Confidence 776665
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.7e-09 Score=127.36 Aligned_cols=288 Identities=14% Similarity=0.169 Sum_probs=199.3
Q ss_pred cccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC-------CceEEEeeCCCCceEEEEEecCCCEEEEeecC
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT-------GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD 1755 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T-------gk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D 1755 (2004)
.....+.||+..|+.++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|-.+.++++++ |
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 34567899999999998888888999999999999998753 34667888999999999999888887765 7
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEe-ecCCeEEEEECCCCceeEEee----ccccCCeEEE
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTG-SGDMKIVTWNLETGQRIHEVA----QAHIGDVVSI 1830 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSg-S~DGtI~IWDl~tg~~i~~il----~~h~~~ItsL 1830 (2004)
|.|.+||.-.+........ ....+..+.+.++.-.+...+++| +...+|+++|.+.+....... .+..+.+.++
T Consensus 804 ~giHlWDPFigr~Laq~~d-apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMED-APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred CcceeecccccchhHhhhc-CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 8899999754322111110 111223344555544444555555 678999999999887654442 3344668999
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE-EEccCCceeEEEcCCCC
Q psy8748 1831 SLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARL-FDIRADQQIATYLPPNK 1909 (2004)
Q Consensus 1831 afSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrI-WDLrtgk~i~t~~~~~~ 1909 (2004)
++.+.|++++++-..|.|.+.|.++|+.+..++..+.....++- |..+.++....|.++.+ |-.-.+.......++..
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppe 961 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE 961 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence 99999999999999999999999999999888776666555543 55567777777888888 87665554444433222
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-C---CeeeEEEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL-K---TTHNGVLS--GHENRVTSISLSPNGMALVTSSWDQFVKV 1978 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~-t---ge~l~tL~--gHs~~VtsLaFSPDg~~LaSgS~DGtIrI 1978 (2004)
.. .. .-.-|.-++++.....+.+|--. . ...+.+++ ...+..++++.-|-..-+..|+..|.|.+
T Consensus 962 pa--hf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 962 PA--HF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ch--hh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11 11 11135566766666667777421 1 11112222 23466788888887777888888888875
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.1e-07 Score=112.41 Aligned_cols=213 Identities=19% Similarity=0.149 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEeecC---CeEEEEECCCCceeEEeeccccCCeEEEEE
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGSGD---MKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~D---GtI~IWDl~tg~~i~~il~~h~~~ItsLaf 1832 (2004)
.|.++|.+.. ..+.+..+...+....|++++. ++.+..+ ..|++||+.+++.... ..+.+.+.+++|
T Consensus 171 ~l~~~d~~g~-------~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~ 241 (417)
T TIGR02800 171 ELQVADYDGA-------NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAF 241 (417)
T ss_pred eEEEEcCCCC-------CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEE
Confidence 4666666432 1233444555667777886654 5544432 5799999998865422 234556778999
Q ss_pred CCCCCEEEEE-ECCC--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC-C--eEEEEEccCCceeEEEcC
Q psy8748 1833 SPDGQYFVTG-SVDK--SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED-K--TARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1833 SPdg~~LaSG-S~DG--sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D-G--tIrIWDLrtgk~i~t~~~ 1906 (2004)
+|+|+.|+.. +.+| .|++||+.++.. ..+..+........|+|+|+.++..+.. | .|+++|+.+++.....
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~-- 318 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT-- 318 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--
Confidence 9999977654 4444 589999987754 3344444555677899999988766543 3 5888888766543222
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCC---eEEEEE
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDDN---NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQ---FVKVWQ 1980 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsDG---sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG---tIrIWd 1980 (2004)
..........|+|+|++++.++.++ .|.+||+.++... .+..+ .......|+|||++|+.++.++ .+++.+
T Consensus 319 -~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 319 -FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred -cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence 1224466789999999999888776 7999998876543 23222 2345668999999988877654 466666
Q ss_pred CCCC
Q psy8748 1981 ESNT 1984 (2004)
Q Consensus 1981 lstg 1984 (2004)
.++.
T Consensus 396 ~~g~ 399 (417)
T TIGR02800 396 TDGR 399 (417)
T ss_pred CCCc
Confidence 5554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-07 Score=117.84 Aligned_cols=187 Identities=17% Similarity=0.227 Sum_probs=151.6
Q ss_pred CCcEEEeecCCeEEEEECCCCceeEEeec--cccCCeEEEEEC------C--------------CCCEEEEEECCCeEEE
Q psy8748 1793 DTTLLTGSGDMKIVTWNLETGQRIHEVAQ--AHIGDVVSISLS------P--------------DGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1793 d~~LlSgS~DGtI~IWDl~tg~~i~~il~--~h~~~ItsLafS------P--------------dg~~LaSGS~DGsIrI 1850 (2004)
..+++..+.||.+++||...++....+.. ...+..++..|. | +...++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 34688889999999999998887655522 123334444442 1 3346788889999999
Q ss_pred EECCCCeEEEEEe--cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEE
Q psy8748 1851 WDFREKKCVQTFF--GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCG 1928 (2004)
Q Consensus 1851 WDlrs~k~I~tl~--~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSG 1928 (2004)
|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..+... ...+.+++++|||..++++
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~--~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ--KPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC--CCccceEEEcCCCCEEEec
Confidence 9999999877775 68899999999999889999999999999999999888888543 3568899999999999988
Q ss_pred eCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCC-----CCEEEE-EECCCeEEEEECCC
Q psy8748 1929 SDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPN-----GMALVT-SSWDQFVKVWQESN 1983 (2004)
Q Consensus 1929 SsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPD-----g~~LaS-gS~DGtIrIWdlst 1983 (2004)
+ ++|++||+++++.+.++.||.++|.+++|..+ |.++.+ ...+..+.+|-+..
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5 68999999999999999999999999999876 666555 45567788998765
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.3e-08 Score=110.79 Aligned_cols=265 Identities=16% Similarity=0.136 Sum_probs=175.1
Q ss_pred CCeEEEEECCCCceEE---EeeCCCCceEEEEEec---CCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcc--
Q psy8748 1713 DGKLIIWDTWTGNKTQ---VIPLRSAWVMSVAFAQ---SGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG-- 1783 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~---ti~~Ht~~ItsLafSP---dg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~-- 1783 (2004)
-|.+.++++.+.+... .....+..+..+.|.. +|. .++-+..+|.|.++..+..... -..+.+....-
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss---~~L~~ls~~ki~~ 121 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS---VHLRGLSSKKISV 121 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee---eeecccchhhhhh
Confidence 3678888877655443 1223445677888864 455 5667778899999987653211 11111111111
Q ss_pred -ceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeE-EeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECC-CCeE
Q psy8748 1784 -FLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIH-EVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFR-EKKC 1858 (2004)
Q Consensus 1784 -~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~-~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlr-s~k~ 1858 (2004)
...++.|.. +..++++..+|.+.+.+........ ...+.|..+++...|+. +.+.+++|+.||.+..||++ .++.
T Consensus 122 ~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 122 VEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 123445553 3458888889999866655443321 24678999999999986 45689999999999999999 3444
Q ss_pred EEE-EecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccC-CceeEEEcCCCCCCCeEEEEEcCC--CCEEEEEeCCCe
Q psy8748 1859 VQT-FFGHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRA-DQQIATYLPPNKNSGFTSCAVSSS--GRYIFCGSDDNN 1933 (2004)
Q Consensus 1859 I~t-l~~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrt-gk~i~t~~~~~~~s~ItsLafSPd--G~~LaSGSsDGs 1933 (2004)
+.. .+.|...|.+|.-+| .+.++++|+.|..|++||.++ ++++..- ...++|..+.++|. ++.++++..+|
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~---~v~GGVWRi~~~p~~~~~lL~~CMh~G- 277 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA---KVGGGVWRIKHHPEIFHRLLAACMHNG- 277 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC---ccccceEEEEecchhhhHHHHHHHhcC-
Confidence 433 456888999998887 577999999999999999985 4444332 34478999999994 34555555555
Q ss_pred EEEEECCCC--e---eeEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEE-EEECCCC
Q psy8748 1934 VHVWDLLKT--T---HNGVLSGHENRVTSISLSPNGMALVTSS-WDQFVK-VWQESNT 1984 (2004)
Q Consensus 1934 IrIWDL~tg--e---~l~tL~gHs~~VtsLaFSPDg~~LaSgS-~DGtIr-IWdlstg 1984 (2004)
.+|-+...+ + .....+.|.+-+..-.|......|+||+ .|+.++ +|-.-++
T Consensus 278 ~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 278 AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 666666443 2 3344566777777777755556788875 466644 6654443
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=125.53 Aligned_cols=289 Identities=18% Similarity=0.205 Sum_probs=202.7
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEee-CCCCceEEEEEecC--CCEEEEeecCCeEEEEEcCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG-NKTQVIP-LRSAWVMSVAFAQS--GNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg-k~l~ti~-~Ht~~ItsLafSPd--g~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
-.+++..+..+|.|+-+|.++.-| +.+-|+... ...+-+. ...-.|-...|++. ..+-++......-.+|++...
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 346888999999999999998876 556666543 3332222 22234667788775 345666666666789998654
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV 1844 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~ 1844 (2004)
. ...+...+.+|...++.+.|.+.. .+++++.|..+..||+++...............+.++|+.....+.+.+.
T Consensus 102 s---~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 102 S---SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred C---ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhcc
Confidence 3 334555678899999999998654 58889999999999999887665555555667788999986666777777
Q ss_pred CCeEEEEECCCC-eEEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1845 DKSCKLWDFREK-KCVQTFFGHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1845 DGsIrIWDlrs~-k~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
.+.|++||.+.+ .++..+++|...|+.++|.. ....+++++.||+|+.||............ ....++..-.+-|-|
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWRGRYLPFG 257 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-cccCcceeccccccC
Confidence 889999999865 46778888988999998876 334688899999999999875544333221 223455555666633
Q ss_pred C--EEEEEeCCCeEEEE---------ECC-CCeeeEEEccCCCCeEEEEEcCCC----------CEEEEEECCCeEEEEE
Q psy8748 1923 R--YIFCGSDDNNVHVW---------DLL-KTTHNGVLSGHENRVTSISLSPNG----------MALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1923 ~--~LaSGSsDGsIrIW---------DL~-tge~l~tL~gHs~~VtsLaFSPDg----------~~LaSgS~DGtIrIWd 1980 (2004)
. ++.---.+..+.++ +.. ..+++..+.||.+.|...-|-..+ -.|+|-+.|..+++|-
T Consensus 258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 2 22211122234443 332 246789999999999888774321 2599999999999999
Q ss_pred CCCC
Q psy8748 1981 ESNT 1984 (2004)
Q Consensus 1981 lstg 1984 (2004)
+.+.
T Consensus 338 I~~~ 341 (1081)
T KOG0309|consen 338 IDSQ 341 (1081)
T ss_pred ccHH
Confidence 8764
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-06 Score=101.24 Aligned_cols=122 Identities=12% Similarity=0.141 Sum_probs=100.6
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCC-eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q psy8748 1865 HEADVNSVCFHPSGLAFATGSEDK-TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1865 h~s~ItsIafSPdg~~LaSgS~DG-tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge 1943 (2004)
+...|.-..+..+++-++.|..|| .+-|||.++++..... ..-+.|.++..+++|++++++.....|.++|+.++.
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e---~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee---CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 445566666666777888899999 8999999877654433 334679999999999999999999999999999998
Q ss_pred eeEEEccCCCCeEEEEEcCCCCEEEEEECCC----eEEEEECCCCeEEEE
Q psy8748 1944 HNGVLSGHENRVTSISLSPNGMALVTSSWDQ----FVKVWQESNTIVWKV 1989 (2004)
Q Consensus 1944 ~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG----tIrIWdlstg~l~k~ 1989 (2004)
....-+...+-|+.++|||+++++|-+--+| .|+++|+.+++....
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 8777777788899999999999999886665 699999999876553
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=4e-07 Score=106.93 Aligned_cols=196 Identities=17% Similarity=0.264 Sum_probs=142.8
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECC----CCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTW----TGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS 1768 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~----Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~ 1768 (2004)
.+++++.+.++...|+.|-..|++.-+.+. .....+....|...|..+-|+-....+++.+.|..+.---.+.+..
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~ 148 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR 148 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc
Confidence 478899999999999999999999988654 3445566678999999999999899999999887654333333221
Q ss_pred CCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCc-eeEEeeccccCCeEEEEECCCCCEEEEEECCCe
Q psy8748 1769 TGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQ-RIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~-~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGs 1847 (2004)
.+..... ...++..+.-. ..+.|...|.|....+.... .....+.+|.+.+.+++|.+....+.+|..|..
T Consensus 149 lg~Y~~~-------~~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~ 220 (404)
T KOG1409|consen 149 LGGYNFE-------TPASALQFDAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS 220 (404)
T ss_pred ccceEee-------ccCCCCceeeE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc
Confidence 1111100 01111111111 45566667777666554322 233456899999999999999999999999999
Q ss_pred EEEEECCCCe-EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEcc
Q psy8748 1848 CKLWDFREKK-CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1848 IrIWDlrs~k-~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLr 1896 (2004)
+.+||+.-++ ......+|...|..+...+--..+++++.||.|.+||++
T Consensus 221 vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 221 VIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred eEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 9999987543 345667899999999888888889999999999999985
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.8e-07 Score=113.47 Aligned_cols=191 Identities=17% Similarity=0.308 Sum_probs=152.0
Q ss_pred cCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe---------------------CCCcEEEeecC
Q psy8748 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI---------------------DDTTLLTGSGD 1802 (2004)
Q Consensus 1744 Pdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs---------------------dd~~LlSgS~D 1802 (2004)
|...+++....||.+++|+...++....+...... .+...+..|. +...++-|...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 44678999999999999999876433222222222 2223333331 22347789999
Q ss_pred CeEEEEECCCCceeEEee-ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEE
Q psy8748 1803 MKIVTWNLETGQRIHEVA-QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAF 1881 (2004)
Q Consensus 1803 GtI~IWDl~tg~~i~~il-~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~L 1881 (2004)
|.|.+|+...|+...++. ..|.+.|.++.++.+-.+|.+++.|+.+..|+....+.++.+.+....+.+++.+|||..+
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 999999999999877765 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCC-----CCEEEEEeC-CCeEEEEECCC
Q psy8748 1882 ATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS-----GRYIFCGSD-DNNVHVWDLLK 1941 (2004)
Q Consensus 1882 aSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPd-----G~~LaSGSs-DGsIrIWDL~t 1941 (2004)
++++ +.|++||+.+++.+.+| .+|.+.|.+++|..+ |.++.++.. +..+.+|-+..
T Consensus 160 ~~as--~~ik~~~~~~kevv~~f--tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITF--TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEe--cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9886 68999999999999998 577799999999887 777776543 44577776543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.8e-07 Score=112.04 Aligned_cols=221 Identities=16% Similarity=0.106 Sum_probs=140.3
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCC---CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEE-eecCC--eE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLD---GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVAC-GGMDN--MC 1758 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~D---GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaS-GS~DG--tI 1758 (2004)
.+.+..|...+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.++. ...+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 44566777889999999999999876643 369999998886544 3333344567899999998874 44455 57
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeec-C--CeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSG-D--MKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~-D--GtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
.+||+.++. ...+..+........|++++ .++..+. + ..|+++|+.+++....... ........|+|
T Consensus 270 y~~d~~~~~-------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~~~~~~~~~Sp 340 (430)
T PRK00178 270 YVMDLASRQ-------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV--GNYNARPRLSA 340 (430)
T ss_pred EEEECCCCC-------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCCccceEECC
Confidence 778886542 12233344445566787654 4544443 3 3688888887764322221 22344578999
Q ss_pred CCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEEccCCceeEEEcCCC
Q psy8748 1835 DGQYFVTGSVD-K--SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED---KTARLFDIRADQQIATYLPPN 1908 (2004)
Q Consensus 1835 dg~~LaSGS~D-G--sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D---GtIrIWDLrtgk~i~t~~~~~ 1908 (2004)
+|++++..+.+ | .|.+||+.+++.. .+.. ........|+|+|+.++..+.+ +.+.+++.. +.....+. .
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~--~ 415 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLP--T 415 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc--C
Confidence 99999887654 3 5889999887643 3322 2223356899999998876654 346777775 33333332 2
Q ss_pred CCCCeEEEEEcC
Q psy8748 1909 KNSGFTSCAVSS 1920 (2004)
Q Consensus 1909 ~~s~ItsLafSP 1920 (2004)
..+.+...+|+|
T Consensus 416 ~~g~~~~p~ws~ 427 (430)
T PRK00178 416 AQGEVREPSWSP 427 (430)
T ss_pred CCCCcCCCccCC
Confidence 223455666765
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-06 Score=105.79 Aligned_cols=278 Identities=12% Similarity=0.063 Sum_probs=186.8
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCC--------------
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN-------------- 1756 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG-------------- 1756 (2004)
-.-++..++|||.|.+|++....| |.+|+...+..+..+. | ..|..+.|+|.+++|.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 345788999999999999887654 9999988877666555 3 3489999999999999865443
Q ss_pred -eEEEEEcCCCCCCCcceEEEEEecCccc--ee-eeEEeCCCcEEEeecCCeEEEEECCCCceeE-EeeccccCCeEEEE
Q psy8748 1757 -MCTVYDLNNRDSTGAAKVIRELLGYEGF--LS-SCRFIDDTTLLTGSGDMKIVTWNLETGQRIH-EVAQAHIGDVVSIS 1831 (2004)
Q Consensus 1757 -tIrVWDl~t~~~~~~~k~i~sl~gh~~~--Vs-svafsdd~~LlSgS~DGtI~IWDl~tg~~i~-~il~~h~~~ItsLa 1831 (2004)
.+.+||+.++ ..+..+.+.... .. -+.|+-++.+++--....++++++ ++.... .+..-....|....
T Consensus 108 n~~~vwd~~sg------~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFs 180 (561)
T COG5354 108 NNVFVWDIASG------MIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFS 180 (561)
T ss_pred CceeEEeccCc------eeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEE
Confidence 4899999765 334444333333 33 455664444333335567899997 333221 11112235688899
Q ss_pred ECCCCC--EEEE-----EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-----------CCCeEEEE
Q psy8748 1832 LSPDGQ--YFVT-----GSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS-----------EDKTARLF 1893 (2004)
Q Consensus 1832 fSPdg~--~LaS-----GS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS-----------~DGtIrIW 1893 (2004)
|+|.++ .|+. ++.++.+++|.+..+..+.+..-....-..+.|.+.|+++++-- ....++++
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 999643 3443 45678899999987766554433333345678888888765432 12457888
Q ss_pred EccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEE--eCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEE
Q psy8748 1894 DIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCG--SDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1894 DLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSG--SsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS 1971 (2004)
++......... ...++|...+|.|.++.+++. -.+..+.++|++.. .... ...+.=..+.|+|.+++++.+|
T Consensus 261 ~~~e~~i~V~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 261 RITERSIPVEK---DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred eecccccceec---cccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEec
Confidence 88744433332 335789999999988776654 46788999998655 3332 3345556788999999999887
Q ss_pred CC---CeEEEEECCCC
Q psy8748 1972 WD---QFVKVWQESNT 1984 (2004)
Q Consensus 1972 ~D---GtIrIWdlstg 1984 (2004)
-| |.|-+|+..+.
T Consensus 335 F~nl~gni~i~~~~~r 350 (561)
T COG5354 335 FDNLQGNIEIFDPAGR 350 (561)
T ss_pred CCccccceEEeccCCc
Confidence 65 78999998876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-06 Score=109.78 Aligned_cols=239 Identities=15% Similarity=0.100 Sum_probs=145.1
Q ss_pred CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCE--E-EEeecCC--eEEEEEcCCCCCCCcceEEEEEecCccceeee
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNF--V-ACGGMDN--MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSC 1788 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~--L-aSGS~DG--tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssv 1788 (2004)
+.|.+.|...+. .+.+......+.+-.|+|||+. + ++...+| .|.+.++..++ ...+.. ..+.....
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~----~~~lt~---~~g~~~~p 236 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA----GKKILA---LQGNQLMP 236 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC----ceEeec---CCCCccce
Confidence 467777865443 3344445556677899999974 2 2444444 56666776542 222222 23334456
Q ss_pred EEeCCC-cEEEee-cCC----eEEEEECCCC--ceeEEeeccccCCeEEEEECCCCCEEEEEE-CCCeEEEE--ECCC-C
Q psy8748 1789 RFIDDT-TLLTGS-GDM----KIVTWNLETG--QRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLW--DFRE-K 1856 (2004)
Q Consensus 1789 afsdd~-~LlSgS-~DG----tI~IWDl~tg--~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIW--Dlrs-~ 1856 (2004)
.|++++ .++..+ .+| .+..|++..+ .....+.....+.....+|+|||+.|+..+ .+|...+| ++.. +
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 788665 444433 222 3444676653 122233323333456789999999887765 45654444 5432 2
Q ss_pred eEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC---
Q psy8748 1857 KCVQTFFGHEADVNSVCFHPSGLAFATGSED---KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD--- 1930 (2004)
Q Consensus 1857 k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D---GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs--- 1930 (2004)
.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+++...... . ...+....|+|||++|+....
T Consensus 317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~-~~~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--S-PENKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--C-CCCccceEECCCCCEEEEEECCCC
Confidence 3334444455567789999999998876543 369999998887643321 1 234567899999998875443
Q ss_pred CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCC
Q psy8748 1931 DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNG 1964 (2004)
Q Consensus 1931 DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg 1964 (2004)
.+.|++||+..++...... ..+.+...+|+|-.
T Consensus 394 ~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 394 ESELYLISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred CceEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence 3568999998776544443 45567778888753
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-05 Score=95.44 Aligned_cols=269 Identities=13% Similarity=0.209 Sum_probs=176.4
Q ss_pred CCeEEEEECCCC--ceEE-EeeCCCCceEEEEEecCCCEEEEeec---CCeEEEEEcCCCCCCCcceEEEEEecCcccee
Q psy8748 1713 DGKLIIWDTWTG--NKTQ-VIPLRSAWVMSVAFAQSGNFVACGGM---DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786 (2004)
Q Consensus 1713 DGtIrVWDl~Tg--k~l~-ti~~Ht~~ItsLafSPdg~~LaSGS~---DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vs 1786 (2004)
++-|++|++.+. +... ..-.+.+.++-++|+|+++.|.++.. +|.|..|.++... +....+..........+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~--G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD--GRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC--CeEEEeeccccCCCCCe
Confidence 466999988743 2211 12235667889999999998888755 4788888887531 12233332222333335
Q ss_pred eeEEeCCC-cEEEee-cCCeEEEEECCC-CceeEE-eeccccCC----------eEEEEECCCCCEEEEEECC-CeEEEE
Q psy8748 1787 SCRFIDDT-TLLTGS-GDMKIVTWNLET-GQRIHE-VAQAHIGD----------VVSISLSPDGQYFVTGSVD-KSCKLW 1851 (2004)
Q Consensus 1787 svafsdd~-~LlSgS-~DGtI~IWDl~t-g~~i~~-il~~h~~~----------ItsLafSPdg~~LaSGS~D-GsIrIW 1851 (2004)
.++...++ .++++. ..|.|.++-++. |..... -...|.+. +....+.|+++++++.+-. -.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 56666555 455444 468899998865 332211 11234443 7889999999999887632 369999
Q ss_pred ECCCCeEEEEE---ecCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEEccCC-ceeEEEc---C----CCCCCCeEEEEEc
Q psy8748 1852 DFREKKCVQTF---FGHEADVNSVCFHPSGLAFATGSE-DKTARLFDIRAD-QQIATYL---P----PNKNSGFTSCAVS 1919 (2004)
Q Consensus 1852 Dlrs~k~I~tl---~~h~s~ItsIafSPdg~~LaSgS~-DGtIrIWDLrtg-k~i~t~~---~----~~~~s~ItsLafS 1919 (2004)
++..+.....- .......+.|.|+|++++.++.++ +++|.+|..... .....+. . -........+.++
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 99977643221 144567889999999999877665 899999998763 2222211 0 1123456789999
Q ss_pred CCCCEEEEEeC-CCeEEEEECCC--Cee--eEEEccCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCC
Q psy8748 1920 SSGRYIFCGSD-DNNVHVWDLLK--TTH--NGVLSGHENRVTSISLSPNGMALVTSSWD-QFVKVWQESN 1983 (2004)
Q Consensus 1920 PdG~~LaSGSs-DGsIrIWDL~t--ge~--l~tL~gHs~~VtsLaFSPDg~~LaSgS~D-GtIrIWdlst 1983 (2004)
+||++|+++.. ...|.+|.+.. ++. +.....+...-.++.|+++|++|++++.| ..|.+|.++.
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 99999998764 34788887754 322 22223355557899999999999998875 4699998763
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-07 Score=122.78 Aligned_cols=195 Identities=26% Similarity=0.413 Sum_probs=148.8
Q ss_pred CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc-e-eeeEEe---CCCcEEEeecCCeEEEEE
Q psy8748 1735 AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF-L-SSCRFI---DDTTLLTGSGDMKIVTWN 1809 (2004)
Q Consensus 1735 ~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~-V-ssvafs---dd~~LlSgS~DGtI~IWD 1809 (2004)
.+|....+..+...++.++.+..+.+||..... ........... . .++.+. ..-++++|+.-+.|.+|+
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~------~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSS------VLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWK 161 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCc------eehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEe
Confidence 445555566677888999999999999987542 11222111111 1 111111 222488888999999999
Q ss_pred CCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEE-EEecCCCCeEEEEEeCCCCEEEEEECCC
Q psy8748 1810 LETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQ-TFFGHEADVNSVCFHPSGLAFATGSEDK 1888 (2004)
Q Consensus 1810 l~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~-tl~~h~s~ItsIafSPdg~~LaSgS~DG 1888 (2004)
....+.. ....+|.+.|.++.++-+|+++++.++|.++++|++.+.+... +..+|...|+.++|+|+ .+++++.|.
T Consensus 162 ~~~dn~p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedc 238 (967)
T KOG0974|consen 162 PHEDNKP-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDC 238 (967)
T ss_pred ccccCCc-ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccce
Confidence 9843333 3567999999999999999999999999999999999988766 66799999999999998 899999999
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
+.++|+.. +.....+. ......+..++..++...+++++.||.+++||+.
T Consensus 239 tcrvW~~~-~~~l~~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 239 TCRVWGVN-GTQLEVYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEEEEecc-cceehhhh-hhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 99999765 44444443 2334679999999999999999999999999974
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.6e-06 Score=101.73 Aligned_cols=237 Identities=12% Similarity=0.104 Sum_probs=154.5
Q ss_pred EeCCCCEEEEEeC----------CCeEEEEECCCCceEEEeeCCCC-------ceEEEEEecCCCEEEEee-c-CCeEEE
Q psy8748 1700 YSGDSRHCVSGSL----------DGKLIIWDTWTGNKTQVIPLRSA-------WVMSVAFAQSGNFVACGG-M-DNMCTV 1760 (2004)
Q Consensus 1700 FSPDG~~LASGS~----------DGtIrVWDl~Tgk~l~ti~~Ht~-------~ItsLafSPdg~~LaSGS-~-DGtIrV 1760 (2004)
+||||+.++++.. +..|.+||..+++.+..+..... ....++++|||+++++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8899998776655 68999999999999988875322 334789999999998776 3 689999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCC-CceeEE---eeccccCCeE-EEEECC-
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLET-GQRIHE---VAQAHIGDVV-SISLSP- 1834 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~t-g~~i~~---il~~h~~~It-sLafSP- 1834 (2004)
+|+..++ ....+.- .+...... ..+..+.+.+.||......+.+ |+.... ++......+. .-.|.+
T Consensus 133 vD~~~~k------vv~ei~v-p~~~~vy~-t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~ 204 (352)
T TIGR02658 133 VDLEGKA------FVRMMDV-PDCYHIFP-TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK 204 (352)
T ss_pred EECCCCc------EEEEEeC-CCCcEEEE-ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC
Confidence 9998653 3333322 11111111 2223333445555555544332 221111 1111000000 003445
Q ss_pred CCCEEEEEECCCeEEEEECCCC-----eEEEEEec-------CCCCeEEEEEeCCCCEEEEEEC----------CCeEEE
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFREK-----KCVQTFFG-------HEADVNSVCFHPSGLAFATGSE----------DKTARL 1892 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs~-----k~I~tl~~-------h~s~ItsIafSPdg~~LaSgS~----------DGtIrI 1892 (2004)
+|+++++... |.|.+.|+... .....+.. ..+.+.-++++++++.+++... .+.|.+
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 7888887776 99999996433 22222211 1233445999999999888431 247999
Q ss_pred EEccCCceeEEEcCCCCCCCeEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCeeeEEE
Q psy8748 1893 FDIRADQQIATYLPPNKNSGFTSCAVSSSGR-YIFCGS-DDNNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1893 WDLrtgk~i~t~~~~~~~s~ItsLafSPdG~-~LaSGS-sDGsIrIWDL~tge~l~tL 1948 (2004)
+|..+++.+..+.. ...+..++++|||+ ++++.. .++.|.++|..+++.++.+
T Consensus 284 iD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 284 VDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99999999988853 24688999999999 877666 5788999999999999887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-06 Score=108.17 Aligned_cols=227 Identities=13% Similarity=0.076 Sum_probs=137.1
Q ss_pred cccccccceeEEEEeCCCCE--E-EEEeCCC--eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec-CC----
Q psy8748 1687 SLKGHINKVNSVHYSGDSRH--C-VSGSLDG--KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM-DN---- 1756 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~--L-ASGS~DG--tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~-DG---- 1756 (2004)
.|..+...+.+-+|||||+. + ++...+| .|++.++.+|+...... ..+......|+|||+.|+..+. +|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCCEEEEEECCCCCcce
Confidence 34445566778899999975 2 2443443 57777988776544332 3444567899999998876553 22
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEee-cCCe--EEEEECCC-CceeEEeeccccCCeEEEE
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGS-GDMK--IVTWNLET-GQRIHEVAQAHIGDVVSIS 1831 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS-~DGt--I~IWDl~t-g~~i~~il~~h~~~ItsLa 1831 (2004)
.+..|++..+.. ........+.........|++++. ++..+ .+|. |+++++.. +... .....+...+....
T Consensus 258 ~~~~~~~~~g~~---g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~-~~lt~~~~~~~~p~ 333 (428)
T PRK01029 258 FIQSFSLETGAI---GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP-RLLTKKYRNSSCPA 333 (428)
T ss_pred eEEEeecccCCC---CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce-EEeccCCCCcccee
Confidence 344466654211 111112222223445668886654 55444 4564 55555542 2222 22233445677899
Q ss_pred ECCCCCEEEEEECC---CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEEccCCceeEEEc
Q psy8748 1832 LSPDGQYFVTGSVD---KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE---DKTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1832 fSPdg~~LaSGS~D---GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~---DGtIrIWDLrtgk~i~t~~ 1905 (2004)
|+|||+.|+..+.+ ..|.+||+.+++... +......+....|+|||+.|+..+. .+.|.+||+.+++......
T Consensus 334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 99999988877643 369999998887543 3333446678999999998876543 3468889988776544432
Q ss_pred CCCCCCCeEEEEEcCCC
Q psy8748 1906 PPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1906 ~~~~~s~ItsLafSPdG 1922 (2004)
..+.+...+|+|-.
T Consensus 413 ---~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 413 ---GSGEKRFPSWGAFP 426 (428)
T ss_pred ---CCCcccCceecCCC
Confidence 22345667887743
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.8e-08 Score=131.84 Aligned_cols=194 Identities=18% Similarity=0.231 Sum_probs=155.0
Q ss_pred ceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q psy8748 1784 FLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF 1862 (2004)
Q Consensus 1784 ~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl 1862 (2004)
.+.++.-++ ....++|+.||.|++|....++.+..........|+.+.|+.+|+.+..+..||.+.+|... .++....
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~ 2288 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW 2288 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecc
Confidence 344444443 34688999999999999999998877766666899999999999999999999999999986 6677778
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEE---CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1863 FGHEADVNSVCFHPSGLAFATGS---EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1863 ~~h~s~ItsIafSPdg~~LaSgS---~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
+.|......+.|-. ..+++++ .++.+.+||....... .+....|.++++++++.|....+++|+.+|.|++||+
T Consensus 2289 qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-SLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred ccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-ceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence 88988888888876 4566654 4678999996532221 1222567788999999999999999999999999999
Q ss_pred CCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1940 LKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1940 ~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
+..+..++++. ++ ...++++|+..|.|+||++..-..+....
T Consensus 2366 rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2366 RQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred HHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 88887777764 44 66789999999999999999865444433
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.2e-06 Score=113.96 Aligned_cols=200 Identities=9% Similarity=0.125 Sum_probs=134.4
Q ss_pred eeeeEEeC-CCcEEEe-ecCCeEEEEECCCCceeEEeec-cc---------------cCCeEEEEECC-CCCEEEEEECC
Q psy8748 1785 LSSCRFID-DTTLLTG-SGDMKIVTWNLETGQRIHEVAQ-AH---------------IGDVVSISLSP-DGQYFVTGSVD 1845 (2004)
Q Consensus 1785 Vssvafsd-d~~LlSg-S~DGtI~IWDl~tg~~i~~il~-~h---------------~~~ItsLafSP-dg~~LaSGS~D 1845 (2004)
...+++.+ ++.++++ +.++.|+.+|..++... .+.. +. ......++++| ++..+++.+.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 45666664 4445444 45678999998776532 2211 00 12346799999 45566666678
Q ss_pred CeEEEEECCCCeEEEEEecC---------------CCCeEEEEEeCCCCEE-EEEECCCeEEEEEccCCceeEEEcC---
Q psy8748 1846 KSCKLWDFREKKCVQTFFGH---------------EADVNSVCFHPSGLAF-ATGSEDKTARLFDIRADQQIATYLP--- 1906 (2004)
Q Consensus 1846 GsIrIWDlrs~k~I~tl~~h---------------~s~ItsIafSPdg~~L-aSgS~DGtIrIWDLrtgk~i~t~~~--- 1906 (2004)
+.|++||..++... .+.+. -.....++++|+++.+ ++.+.++.|++||+.++........
T Consensus 705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 89999998876532 22111 1235679999999854 4555678999999987653221100
Q ss_pred --------CC--------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc-------------cCCCCeEE
Q psy8748 1907 --------PN--------KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS-------------GHENRVTS 1957 (2004)
Q Consensus 1907 --------~~--------~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~-------------gHs~~Vts 1957 (2004)
.. .......++++++|+.+++-..+++|++||..++....... ++-....+
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 00 01124578999999988888889999999998776654321 11235789
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1958 ISLSPNGMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1958 LaFSPDg~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
++++++|+++++-+.++.|++||+.++..
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999999999888999999999998764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-05 Score=93.06 Aligned_cols=222 Identities=18% Similarity=0.166 Sum_probs=146.6
Q ss_pred CCCeEEEEECCCCceEEEeeCCC--CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeE
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRS--AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR 1789 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht--~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssva 1789 (2004)
.+|+|..||..+|+.+....... ....+. ..+++..+++++.++.+..||..+++ ..-.... ...+....
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~------~~W~~~~-~~~~~~~~ 72 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGK------VLWRFDL-PGPISGAP 72 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSE------EEEEEEC-SSCGGSGE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCC------EEEEeec-ccccccee
Confidence 36899999999999998886421 112211 23357778888899999999997653 3333222 22222223
Q ss_pred EeCCCcEEEeecCCeEEEEECCCCceeEEeeccc---cCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC
Q psy8748 1790 FIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAH---IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE 1866 (2004)
Q Consensus 1790 fsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h---~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~ 1866 (2004)
...++.+++++.++.++.+|..+|+...+..... ............+..++++..+|.|..+|.++|+.+.......
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 4567778888889999999999999987742221 1112222233347889999989999999999999988876543
Q ss_pred CC----------eEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy8748 1867 AD----------VNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHV 1936 (2004)
Q Consensus 1867 s~----------ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrI 1936 (2004)
.. +.+-....++ .++.++.+|.+..+|+.+++...... .. .+.. ....++..+++++.+|.|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTEEEE
T ss_pred CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCCEEEE
Confidence 22 1122222344 77777778864444999998765432 11 1222 24567888888889999999
Q ss_pred EECCCCeeeEE
Q psy8748 1937 WDLLKTTHNGV 1947 (2004)
Q Consensus 1937 WDL~tge~l~t 1947 (2004)
||+++|+.+..
T Consensus 227 ~d~~tG~~~W~ 237 (238)
T PF13360_consen 227 LDLKTGKVVWQ 237 (238)
T ss_dssp EETTTTEEEEE
T ss_pred EECCCCCEEeE
Confidence 99999988653
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.5e-06 Score=103.89 Aligned_cols=271 Identities=14% Similarity=0.048 Sum_probs=172.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCC----------ceE-EEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSA----------WVM-SVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~----------~It-sLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
+..+++++.+|.+.-+|..+|+.+........ .+. .+.. ++..++.++.+|.+..+|.++++.....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 56778888889999999999999887654321 000 1111 3567778888999999999887644433
Q ss_pred eEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC--CCCEEEEEECCCeEEE
Q psy8748 1773 KVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP--DGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP--dg~~LaSGS~DGsIrI 1850 (2004)
... +.+.+.....++.+++++.+|.+..+|..+|+.+.+.............-+| .+..++.++.+|.+..
T Consensus 147 ~~~-------~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 147 KVA-------GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSA 219 (394)
T ss_pred cCC-------CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEE
Confidence 221 1111111123567888889999999999999987665322110000000111 2345777888999999
Q ss_pred EECCCCeEEEEEecCCC-------CeEEEEEeC--CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCC
Q psy8748 1851 WDFREKKCVQTFFGHEA-------DVNSVCFHP--SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1851 WDlrs~k~I~tl~~h~s-------~ItsIafSP--dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPd 1921 (2004)
+|..+++.+........ ....+..+| .+..+++++.+|.+..+|..+|+...+..... ...+. ..
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~--~~ 293 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDFA--VD 293 (394)
T ss_pred EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcE--EE
Confidence 99999887655421110 011111222 34567778889999999999999887764321 11122 24
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEEccCCC-CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1922 GRYIFCGSDDNNVHVWDLLKTTHNGVLSGHEN-RVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1922 G~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~-~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
+..+++++.+|.+..+|..+|+.+.....-.. ...+... .+.+|+.++.||.|...|..+|+.....+
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 67788888999999999999987654432111 1222222 25578889999999999999987654444
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-05 Score=111.78 Aligned_cols=241 Identities=17% Similarity=0.148 Sum_probs=158.4
Q ss_pred eEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEEEeeC--C------------CCceEEEEEecCCCEEEEee-cCCeEE
Q psy8748 1696 NSVHYSGD-SRHCVSGSLDGKLIIWDTWTGNKTQVIPL--R------------SAWVMSVAFAQSGNFVACGG-MDNMCT 1759 (2004)
Q Consensus 1696 tsLaFSPD-G~~LASGS~DGtIrVWDl~Tgk~l~ti~~--H------------t~~ItsLafSPdg~~LaSGS-~DGtIr 1759 (2004)
..++++++ +..+++-..++.|++||.. |..+..+.. . -.....++++++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46789875 5567777778899999974 555544432 1 12357899999888665554 457899
Q ss_pred EEEcCCCCCCCcceEEEEEec----------C-------ccceeeeEEeC-CCc-EEEeecCCeEEEEECCCCceeEEee
Q psy8748 1760 VYDLNNRDSTGAAKVIRELLG----------Y-------EGFLSSCRFID-DTT-LLTGSGDMKIVTWNLETGQRIHEVA 1820 (2004)
Q Consensus 1760 VWDl~t~~~~~~~k~i~sl~g----------h-------~~~Vssvafsd-d~~-LlSgS~DGtI~IWDl~tg~~i~~il 1820 (2004)
++|..++. +..+.+ . -.....+++.+ ++. +++.+.++.|++||..++......-
T Consensus 650 ~id~~~~~-------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 650 EIDFVNET-------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred EEecCCCE-------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec
Confidence 99886532 111111 0 11234577775 444 5666678999999998775431110
Q ss_pred c-------c------ccCCeEEEEECCCCCEEEE-EECCCeEEEEECCCCeEEEEEec-------------C--------
Q psy8748 1821 Q-------A------HIGDVVSISLSPDGQYFVT-GSVDKSCKLWDFREKKCVQTFFG-------------H-------- 1865 (2004)
Q Consensus 1821 ~-------~------h~~~ItsLafSPdg~~LaS-GS~DGsIrIWDlrs~k~I~tl~~-------------h-------- 1865 (2004)
. + .......++++|+++.+++ -+.++.|++||+.++.......+ .
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 0 0 1123567999999985554 45568999999987653211100 0
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC-----------CCCCCeEEEEEcCCCCEEEEEeCCCeE
Q psy8748 1866 EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP-----------NKNSGFTSCAVSSSGRYIFCGSDDNNV 1934 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-----------~~~s~ItsLafSPdG~~LaSGSsDGsI 1934 (2004)
-....+++++++|+.+++-+.+++|++||..++......... ........++++++|+.+++-+.++.|
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 112468999999998888888999999999877654332111 111246789999999988888889999
Q ss_pred EEEECCCCee
Q psy8748 1935 HVWDLLKTTH 1944 (2004)
Q Consensus 1935 rIWDL~tge~ 1944 (2004)
++||+.+++.
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999988764
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.8e-06 Score=103.68 Aligned_cols=265 Identities=13% Similarity=0.072 Sum_probs=165.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG 1783 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~ 1783 (2004)
+..++.++.+|.++.+|.++|+.+...........+... .+..+++++.+|.+..+|..+++................
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 456777888999999999999998877654321111122 245677788889999999987653222211000000000
Q ss_pred ceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccC------CeEEEEECC--CCCEEEEEECCCeEEEEECCC
Q psy8748 1784 FLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIG------DVVSISLSP--DGQYFVTGSVDKSCKLWDFRE 1855 (2004)
Q Consensus 1784 ~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~------~ItsLafSP--dg~~LaSGS~DGsIrIWDlrs 1855 (2004)
. ..... .++.++.++.+|.+..+|..+|+........... ....+..+| .+..+++++.+|.+..+|..+
T Consensus 198 ~-~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 198 E-SAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS 275 (394)
T ss_pred C-CCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence 0 01111 2346778888999999999998876543211110 011111222 356777888899999999999
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q psy8748 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVH 1935 (2004)
Q Consensus 1856 ~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIr 1935 (2004)
++.+..... .....+. ..+..++.++.+|.+..+|..+++.+........ .......+ .+.++++++.+|.++
T Consensus 276 G~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l~v~~~~G~l~ 348 (394)
T PRK11138 276 GQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYLVVGDSEGYLH 348 (394)
T ss_pred CCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-CcccCCEE--ECCEEEEEeCCCEEE
Confidence 987655432 1111222 2456788888999999999999988765432111 11122222 356788899999999
Q ss_pred EEECCCCeeeEEEccCCCCeEE-EEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1936 VWDLLKTTHNGVLSGHENRVTS-ISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1936 IWDL~tge~l~tL~gHs~~Vts-LaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
++|..+|+.+...+.....+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 349 ~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 349 WINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 9999999988877644333322 222 3447888999999988765
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-06 Score=110.91 Aligned_cols=219 Identities=16% Similarity=0.111 Sum_probs=135.0
Q ss_pred cccccccceeEEEEeCCCCEEEEEeCC---CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEE-eecCCe--EEE
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGSLD---GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVAC-GGMDNM--CTV 1760 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS~D---GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaS-GS~DGt--IrV 1760 (2004)
.+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++.... ....+......|+|||+.|+. .+.+|. |.+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 445556778899999999998876543 3589999988865432 222333457899999997765 455665 666
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEee-cC--CeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGS-GD--MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS-~D--GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
||+.++. ...+..+........|++++. ++..+ .+ ..|+++|+.+++...... ........+|+|||
T Consensus 291 ~dl~tg~-------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--~g~~~~~~~~SpDG 361 (448)
T PRK04792 291 VDIATKA-------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF--EGEQNLGGSITPDG 361 (448)
T ss_pred EECCCCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec--CCCCCcCeeECCCC
Confidence 6765432 223333444556677876554 44433 23 357777887776542222 22223457899999
Q ss_pred CEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC-C--eEEEEEccCCceeEEEcCCCCC
Q psy8748 1837 QYFVTGSVD-K--SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED-K--TARLFDIRADQQIATYLPPNKN 1910 (2004)
Q Consensus 1837 ~~LaSGS~D-G--sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D-G--tIrIWDLrtgk~i~t~~~~~~~ 1910 (2004)
++++..+.+ + .|.++|+.+++.. .+... .......|+|+|+.++..+.+ | .+.+++.. ++....+.. ..
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~--~~ 436 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPA--GQ 436 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC--CC
Confidence 988876653 3 4666788777643 23222 122345799999987766543 3 36777764 555444422 23
Q ss_pred CCeEEEEEcC
Q psy8748 1911 SGFTSCAVSS 1920 (2004)
Q Consensus 1911 s~ItsLafSP 1920 (2004)
+.+...+|+|
T Consensus 437 g~~~~p~Wsp 446 (448)
T PRK04792 437 GEVKSPAWSP 446 (448)
T ss_pred CCcCCCccCC
Confidence 4456677776
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6e-06 Score=112.89 Aligned_cols=279 Identities=14% Similarity=0.137 Sum_probs=173.7
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEE----ECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIW----DTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVW----Dl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
..+.|.++.|-++...++.+..+|.|.+. +..+.. +...-.-+..|.+++||||+..++.++.+|++.+.+-+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-- 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-- 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc--
Confidence 44789999999999999999999999999 443332 22233345679999999999999999999988887542
Q ss_pred CCCCcceEEEEEecCc-----cceeeeEEeCCCcEEEeecCCeEE--EEECCCCceeEEeeccccCCeEEEEECCCCCEE
Q psy8748 1767 DSTGAAKVIRELLGYE-----GFLSSCRFIDDTTLLTGSGDMKIV--TWNLETGQRIHEVAQAHIGDVVSISLSPDGQYF 1839 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~-----~~Vssvafsdd~~LlSgS~DGtI~--IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~L 1839 (2004)
+..+....-+. .....+-|.....-+=|+...... .-|....+.-..... ....-..++|-.||.+|
T Consensus 151 -----fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yF 224 (928)
T PF04762_consen 151 -----FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYF 224 (928)
T ss_pred -----ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEE
Confidence 22222221111 111222222211111111111000 001000000000111 34456789999999999
Q ss_pred EEEEC---C---CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEEccCCceeEEEcCC--C
Q psy8748 1840 VTGSV---D---KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE---DKTARLFDIRADQQIATYLPP--N 1908 (2004)
Q Consensus 1840 aSGS~---D---GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~---DGtIrIWDLrtgk~i~t~~~~--~ 1908 (2004)
++.+. . ..|+||+-+ |....+-..-.+--.+++|.|.|+++++... ...|.+|.- +|-.-..|..+ .
T Consensus 225 AVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDP 302 (928)
T ss_pred EEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCC
Confidence 99875 3 479999954 6655444433444457899999999998775 345777774 45554555433 3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EEEcc-CCCCeEEEEEcCC-CCEEEEEECCCeEEEEEC
Q psy8748 1909 KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN--GVLSG-HENRVTSISLSPN-GMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1909 ~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l--~tL~g-Hs~~VtsLaFSPD-g~~LaSgS~DGtIrIWdl 1981 (2004)
....+..+.|++|+..||+...|. |.+|-..+..-. +.+.. ....+..+.|+|. ...|.....+|.+..++.
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 456789999999999999987665 999998876532 22322 2344566999985 445777776677766544
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.2e-06 Score=96.81 Aligned_cols=259 Identities=14% Similarity=0.101 Sum_probs=172.7
Q ss_pred CCeEEEEECCCCc--eEEEeeCCCCceEEEEEec-----CCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccce
Q psy8748 1713 DGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQ-----SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL 1785 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSP-----dg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~V 1785 (2004)
...+.+|+..+.. .+... ..+.|-| ...+|+.||..|...+|...+.+ ........+...|
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-----~h~~~cd~snn~v 118 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTND-----GHLYQCDVSNNDV 118 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcc-----cceeeecccccch
Confidence 3456777765543 22222 2344444 35689999999999999987643 1111222222222
Q ss_pred eeeEEe--CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCe-E-EE-
Q psy8748 1786 SSCRFI--DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKK-C-VQ- 1860 (2004)
Q Consensus 1786 ssvafs--dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k-~-I~- 1860 (2004)
+-+.-. ....+..++.|.++++.+++.+.......... -.+.+++++++++++++.+....|..|.+.... . +.
T Consensus 119 ~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~-~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~ 197 (344)
T KOG4532|consen 119 TLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN-LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI 197 (344)
T ss_pred hhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc-cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee
Confidence 211111 22347788889888888887654432221111 237889999999999999999999999887432 2 22
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEE---cCCCCCCCeEEEEEcCCC--CEEEEEeCCCeEE
Q psy8748 1861 TFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY---LPPNKNSGFTSCAVSSSG--RYIFCGSDDNNVH 1935 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~---~~~~~~s~ItsLafSPdG--~~LaSGSsDGsIr 1935 (2004)
......+.-.+..|+.....++++..||++.|||++........ ..+.|.+.+..+.|++.| .+|+..-.-+.+.
T Consensus 198 ~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h 277 (344)
T KOG4532|consen 198 YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH 277 (344)
T ss_pred EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence 22234455678899999999999999999999999876543322 345688999999999866 3566666678999
Q ss_pred EEECCCCeeeEEEc-------cCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q psy8748 1936 VWDLLKTTHNGVLS-------GHE-NRVTSISLSPNGMALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1936 IWDL~tge~l~tL~-------gHs-~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
+.|++++.....+. .|. ..|..-.|+.++.-+.+.+++. +.=|++....
T Consensus 278 v~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~srs 334 (344)
T KOG4532|consen 278 VVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSRS 334 (344)
T ss_pred EEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheeeccccc
Confidence 99999987665542 233 3388888988887777777653 5667776653
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.9e-05 Score=90.38 Aligned_cols=269 Identities=14% Similarity=0.202 Sum_probs=171.6
Q ss_pred ccccceeEEEEeCCCCEEEEEeCC---CeEEEEECCC--CceEEE--eeCCCCceEEEEEecCCCEEEEeecC-CeEEEE
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLD---GKLIIWDTWT--GNKTQV--IPLRSAWVMSVAFAQSGNFVACGGMD-NMCTVY 1761 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~D---GtIrVWDl~T--gk~l~t--i~~Ht~~ItsLafSPdg~~LaSGS~D-GtIrVW 1761 (2004)
.+.+.++-++|+|++++|.++..+ |.|..|.+.. |+.... ......+-+.++++++|++++++... |.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 466788899999999999887654 7777776654 544322 22233344789999999999988754 899999
Q ss_pred EcCCCCCCCcceEEEEEecCccc----------eeeeEEeCCCcEEEeec--CCeEEEEECCCCceeEEe--eccccCCe
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGF----------LSSCRFIDDTTLLTGSG--DMKIVTWNLETGQRIHEV--AQAHIGDV 1827 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~----------Vssvafsdd~~LlSgS~--DGtI~IWDl~tg~~i~~i--l~~h~~~I 1827 (2004)
-++....... ......|.+. +....+.+++.++.+.+ --.|.+|++..|...... .......-
T Consensus 117 p~~~dG~l~~---~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 117 PLQADGSLQP---VVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EcccCCcccc---ceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence 9876432211 1111222222 55666777775444443 346999999977643221 12345567
Q ss_pred EEEEECCCCCEEEEEE-CCCeEEEEECCCC-eEEEEEe---------cCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEEc
Q psy8748 1828 VSISLSPDGQYFVTGS-VDKSCKLWDFREK-KCVQTFF---------GHEADVNSVCFHPSGLAFATGSE-DKTARLFDI 1895 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS-~DGsIrIWDlrs~-k~I~tl~---------~h~s~ItsIafSPdg~~LaSgS~-DGtIrIWDL 1895 (2004)
..|.|+|++++.++.+ -+++|.+|..+.. ..+..+. ........|..++||++|+++.+ ...|.+|.+
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 8999999999887766 4789999998763 2222222 12345678899999999988764 235777776
Q ss_pred cCC--ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEEC--CCCeeeEEEc-cCCCCeEEEEEc
Q psy8748 1896 RAD--QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN-NVHVWDL--LKTTHNGVLS-GHENRVTSISLS 1961 (2004)
Q Consensus 1896 rtg--k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDG-sIrIWDL--~tge~l~tL~-gHs~~VtsLaFS 1961 (2004)
... +....-..+.+...-....++++|++|+++..++ .|.+|.. .+|+...... .......|+.|.
T Consensus 274 ~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 274 DPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 543 2221112223333467889999999999988754 5888865 4555444333 344455666663
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-06 Score=108.49 Aligned_cols=311 Identities=11% Similarity=0.108 Sum_probs=194.1
Q ss_pred cccccccccccceeEEEEeCCC------------CEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecC---C-
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDS------------RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQS---G- 1746 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG------------~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPd---g- 1746 (2004)
+.+.++.-|...|+.+.|.|-. -.||++.-.|.|.+||...+..+..+..|..++..++|-+. .
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Sr 125 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSR 125 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcch
Confidence 4466677799999999997621 15677777899999999999999999999999999999763 3
Q ss_pred CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe--CCCcEEEeecCCeEEEEECCC-------CceeE
Q psy8748 1747 NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLET-------GQRIH 1817 (2004)
Q Consensus 1747 ~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~t-------g~~i~ 1817 (2004)
..|++-.....+.+|+.++++. .-..........|+.+. +...+..-+..|.+.+-+.-. |+..
T Consensus 126 d~LlaIh~ss~lvLwntdtG~k------~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~- 198 (1062)
T KOG1912|consen 126 DVLLAIHGSSTLVLWNTDTGEK------FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEF- 198 (1062)
T ss_pred heeEEecCCcEEEEEEccCCce------eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeE-
Confidence 4677777778999999987642 22222223344444443 344455556666666655421 1111
Q ss_pred EeeccccC------------C-------------eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEE
Q psy8748 1818 EVAQAHIG------------D-------------VVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSV 1872 (2004)
Q Consensus 1818 ~il~~h~~------------~-------------ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsI 1872 (2004)
.+...|.. . .-.++|+|.-+.++.......+.++|++-..++....-..+.+.-+
T Consensus 199 qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv 278 (1062)
T KOG1912|consen 199 QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFV 278 (1062)
T ss_pred EEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCccee
Confidence 12112111 0 1135678866655556667889999999888888877667777778
Q ss_pred EEeCCCC--EEEEEECCCeEEEEEccCCceeEEEc----CCCCCCCeEE-----------EEEcCC-CCEEEEEeCCCeE
Q psy8748 1873 CFHPSGL--AFATGSEDKTARLFDIRADQQIATYL----PPNKNSGFTS-----------CAVSSS-GRYIFCGSDDNNV 1934 (2004)
Q Consensus 1873 afSPdg~--~LaSgS~DGtIrIWDLrtgk~i~t~~----~~~~~s~Its-----------LafSPd-G~~LaSGSsDGsI 1934 (2004)
.+-|+++ .+++...||.+.+|-.+......+.. .......+.+ ....|. ...++.--.+|.+
T Consensus 279 ~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~ 358 (1062)
T KOG1912|consen 279 DVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDS 358 (1062)
T ss_pred EeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchh
Confidence 8888664 58999999999999865422211110 0000111222 222332 3334444457778
Q ss_pred EEEECCCCeeeEEE-------------------------------ccCCCCeEEEEEcC-----------CC-------C
Q psy8748 1935 HVWDLLKTTHNGVL-------------------------------SGHENRVTSISLSP-----------NG-------M 1965 (2004)
Q Consensus 1935 rIWDL~tge~l~tL-------------------------------~gHs~~VtsLaFSP-----------Dg-------~ 1965 (2004)
.+|.+.+++..... .+|....++....| .| .
T Consensus 359 ~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~p 438 (1062)
T KOG1912|consen 359 TFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVP 438 (1062)
T ss_pred HHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeee
Confidence 88887643321100 13555555544433 22 2
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1966 ALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1966 ~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
++|.|...|+|.++|+.++.. .+.+..|.+.|.|+
T Consensus 439 LvAvGT~sGTV~vvdvst~~v---~~~fsvht~~Vkgl 473 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAV---AASFSVHTSLVKGL 473 (1062)
T ss_pred eEEeecCCceEEEEEecchhh---hhhhcccccceeee
Confidence 578899999999999999843 44455666666554
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-07 Score=117.11 Aligned_cols=291 Identities=16% Similarity=0.157 Sum_probs=186.5
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
-.+++.+|+.+|.|+-+|. ++.-|-.. -|... .++..+-+.-. .+..+.+..|++....
T Consensus 23 v~~~~~a~si~p~grdi~l-Asr~gl~i-~dld~------------p~~ppr~l~h~-------tpw~vad~qws~h~a~ 81 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVL-ASRQGLYI-IDLDD------------PFTPPRWLHHI-------TPWQVADVQWSPHPAK 81 (1081)
T ss_pred ecCcccceeeccccchhhh-hhhcCeEE-EeccC------------CCCCceeeecc-------CcchhcceecccCCCC
Confidence 4557999999999999998 66666543 34333 12222222211 1233344455555544
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCC-CEEEEEeC
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDS-RHCVSGSL 1712 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG-~~LASGS~ 1712 (2004)
+.++..+..+- .+..- .... .... .-..+.||+.+|+++.|+|.. ..+++++-
T Consensus 82 ~~wiVsts~qk--aiiwn------------------lA~s--s~~a----Ief~lhghsraitd~n~~~q~pdVlatcsv 135 (1081)
T KOG0309|consen 82 PYWIVSTSNQK--AIIWN------------------LAKS--SSNA----IEFVLHGHSRAITDINFNPQHPDVLATCSV 135 (1081)
T ss_pred ceeEEecCcch--hhhhh------------------hhcC--Cccc----eEEEEecCccceeccccCCCCCcceeeccc
Confidence 55444442211 00000 0000 0011 134688999999999999854 47899999
Q ss_pred CCeEEEEECCCCc-eEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1713 DGKLIIWDTWTGN-KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk-~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
|..+..||+.+.. .+..+..-......+.|+-....+.+.+....|.+||.+.+. .....+.+|...+..+.|.
T Consensus 136 dt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs-----~pl~s~K~~vs~vn~~~fn 210 (1081)
T KOG0309|consen 136 DTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS-----TPLCSLKGHVSSVNSIDFN 210 (1081)
T ss_pred cccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC-----cceEEecccceeeehHHHh
Confidence 9999999998764 444444444556788998866666666677789999998753 5566677787788888776
Q ss_pred C--CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC--EEEEEECCCeEEEEECC----------CCe
Q psy8748 1792 D--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ--YFVTGSVDKSCKLWDFR----------EKK 1857 (2004)
Q Consensus 1792 d--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~--~LaSGS~DGsIrIWDlr----------s~k 1857 (2004)
. ...+.+++.||+|+.||................+|..-.+.|-|. ++.-.-.+..+.+++.+ ..+
T Consensus 211 r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~ 290 (1081)
T KOG0309|consen 211 RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNT 290 (1081)
T ss_pred hhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCc
Confidence 3 356899999999999998765443333334556677777777433 32222222344444433 235
Q ss_pred EEEEEecCCCCeEEEEEeCCC----------CEEEEEECCCeEEEEEcc
Q psy8748 1858 CVQTFFGHEADVNSVCFHPSG----------LAFATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1858 ~I~tl~~h~s~ItsIafSPdg----------~~LaSgS~DGtIrIWDLr 1896 (2004)
++..+.+|.+.|..+.|-..+ -.|++.+.|.++++|-+.
T Consensus 291 pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 291 PVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred ceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 788999999988877775422 259999999999999875
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-06 Score=98.43 Aligned_cols=243 Identities=16% Similarity=0.157 Sum_probs=159.6
Q ss_pred cccceeEEEEeC---CCC-EEEEEeCCCeEEEEECCCCceEEEeeCCC------CceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1691 HINKVNSVHYSG---DSR-HCVSGSLDGKLIIWDTWTGNKTQVIPLRS------AWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1691 Ht~~VtsLaFSP---DG~-~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht------~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
-+..+..+.|.. +|. .++-+..+|.|.++..........+.+-. ....++.|++.+..++++..+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 345677777762 455 45667778999999765544444443211 12457789999999999999999986
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEe--CCCcEEEeecCCeEEEEECC-CCceeEEeeccccCCeEEEEECC-CC
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLE-TGQRIHEVAQAHIGDVVSISLSP-DG 1836 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~-tg~~i~~il~~h~~~ItsLafSP-dg 1836 (2004)
-+.... ..+.......|+-....+.|+ ..+.+++|++||.+..||++ .++.+..-.+.|...|.+|.-+| .+
T Consensus 148 v~~t~~----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~ 223 (339)
T KOG0280|consen 148 VYETEM----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKP 223 (339)
T ss_pred Eeccee----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCC
Confidence 554432 233444677888888888887 44679999999999999999 45555554567888999998887 57
Q ss_pred CEEEEEECCCeEEEEECCC-CeEEEEEecCCCCeEEEEEeCCC--CEEEEEECCCeEEEEEccCCcee---EEEcCCCCC
Q psy8748 1837 QYFVTGSVDKSCKLWDFRE-KKCVQTFFGHEADVNSVCFHPSG--LAFATGSEDKTARLFDIRADQQI---ATYLPPNKN 1910 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs-~k~I~tl~~h~s~ItsIafSPdg--~~LaSgS~DGtIrIWDLrtgk~i---~t~~~~~~~ 1910 (2004)
.++++|+.|-.|++||.++ ++++..- .-.+.|+.+.++|.- ..++++-.+| .+|-+...+... .......|.
T Consensus 224 ~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hd 301 (339)
T KOG0280|consen 224 TYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHD 301 (339)
T ss_pred ceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeecccccc
Confidence 7999999999999999984 4554433 335889999999943 2344443343 667666544332 111122333
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCeEE-EEEC
Q psy8748 1911 SGFTSCAVSSSGRYIFCGS-DDNNVH-VWDL 1939 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGS-sDGsIr-IWDL 1939 (2004)
+-+..-.|.....++++++ .|..++ +|-.
T Consensus 302 Sl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 302 SLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred ceeeccccccccceeeeeeccccceeeeeee
Confidence 3333344443345567654 344433 5543
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.7e-08 Score=120.99 Aligned_cols=265 Identities=14% Similarity=0.233 Sum_probs=186.2
Q ss_pred cccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCC--eE
Q psy8748 1681 KLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN--MC 1758 (2004)
Q Consensus 1681 k~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG--tI 1758 (2004)
.+++.++++.|+..-+|++|+.+.++|+.|+..|.|+++++.+|.......+|..+|+-+.-+.+|..+++.+.-. -.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 5678889999999999999999999999999999999999999999999999999999999999999777665433 46
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEeecCCeEEEEECCCCceeEEeecc---ccCCeEEEEECC
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGSGDMKIVTWNLETGQRIHEVAQA---HIGDVVSISLSP 1834 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~DGtI~IWDl~tg~~i~~il~~---h~~~ItsLafSP 1834 (2004)
.+|+...- +.....+ ..-.++.|++... -+.|+......+||+.++..+.+++.+ ....-.+..|+|
T Consensus 1170 aLW~~~s~-----~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1170 ALWDASST-----GGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred HHhccccc-----cCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 78987541 1222222 2234566765543 445666678899999999877654322 122236788999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeE
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~It 1914 (2004)
+..+++ .|| .+||++..+.++.|......+ .-.|+|+|+.++..+ .|||+++.+.+.....-. -.
T Consensus 1241 ~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld----qc 1305 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD----QC 1305 (1516)
T ss_pred CcceEe---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCcccc----ce
Confidence 888765 355 589999888777775544322 335999999988876 489999988876653222 35
Q ss_pred EEEEcCCCCEEEEEeC------C-----------CeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEE
Q psy8748 1915 SCAVSSSGRYIFCGSD------D-----------NNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTS 1970 (2004)
Q Consensus 1915 sLafSPdG~~LaSGSs------D-----------GsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSg 1970 (2004)
.+.|+..|+.++..-. | ...+-+|......+.++.+ ...|.+++-.+...++..-
T Consensus 1306 ~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred EEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEEE
Confidence 6788888887665430 0 1233444444555555543 3345666666666666554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00013 Score=85.65 Aligned_cols=219 Identities=17% Similarity=0.140 Sum_probs=145.6
Q ss_pred EEEEec-CCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCcee
Q psy8748 1739 SVAFAQ-SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRI 1816 (2004)
Q Consensus 1739 sLafSP-dg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i 1816 (2004)
+++|.+ ++.++++--..+.|..|+..++. ...... .. ...+.+. +++.++++...+. .++|..+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~-------~~~~~~-~~-~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE-------VEVIDL-PG-PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE-------EEEEES-SS-EEEEEEECTTSEEEEEETTCE-EEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe-------EEEEec-CC-CceEEEEccCCEEEEEEcCce-EEEecCCCcEE
Confidence 678998 67777777778999999987642 111221 12 5555555 6777877776554 55599888654
Q ss_pred EEeec---c-ccCCeEEEEECCCCCEEEEEECC--------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEE-E
Q psy8748 1817 HEVAQ---A-HIGDVVSISLSPDGQYFVTGSVD--------KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFA-T 1883 (2004)
Q Consensus 1817 ~~il~---~-h~~~ItsLafSPdg~~LaSGS~D--------GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~La-S 1883 (2004)
..... . .......+++.++|++.++.... |.|..++.. ++..... ..-...+.|+|+|+++.|+ +
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEE
T ss_pred EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeec
Confidence 32221 1 34567889999999966665533 568888877 5543333 3355678999999998776 5
Q ss_pred EECCCeEEEEEccCCce----eEEE-cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEE
Q psy8748 1884 GSEDKTARLFDIRADQQ----IATY-LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI 1958 (2004)
Q Consensus 1884 gS~DGtIrIWDLrtgk~----i~t~-~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsL 1958 (2004)
-+..+.|..|++..... ...+ .........-.++++.+|++.++....+.|.++|.. |+.+..+......++++
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 56678899999864322 1222 112222346789999999998888889999999976 88888887666689999
Q ss_pred EEc-CCCCEEEEE
Q psy8748 1959 SLS-PNGMALVTS 1970 (2004)
Q Consensus 1959 aFS-PDg~~LaSg 1970 (2004)
+|. ++.+.|+..
T Consensus 231 ~fgg~~~~~L~vT 243 (246)
T PF08450_consen 231 AFGGPDGKTLYVT 243 (246)
T ss_dssp EEESTTSSEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 994 565555544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.51 E-value=7e-05 Score=86.35 Aligned_cols=221 Identities=17% Similarity=0.121 Sum_probs=139.8
Q ss_pred CCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1755 DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1755 DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
+|.|..||..+++.... ..+........+.....++.+++++.++.++.||..+|+.+.+...... +.... ..
T Consensus 2 ~g~l~~~d~~tG~~~W~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~-~~ 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWS----YDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGAP-VV 74 (238)
T ss_dssp TSEEEEEETTTTEEEEE----EECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSGE-EE
T ss_pred CCEEEEEECCCCCEEEE----EECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--cccee-ee
Confidence 57788888866532111 1111111222222444677888889999999999999998766643211 11111 12
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEE-ecCCC---CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCC
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFREKKCVQTF-FGHEA---DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN 1910 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs~k~I~tl-~~h~s---~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~ 1910 (2004)
.+..+++++.++.++.+|..+++.+... ..... .........++..++++..+|.|..+|.++|+.+.........
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 4567788888999999999999988874 33211 1122233334778888988999999999999998888553322
Q ss_pred C--C------eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1911 S--G------FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1911 s--~------ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
. . +..-....++ .+++++.+|.+.-+|+.+++.+.... ...+... ...++..|+.++.||.|..||+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETT
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECC
Confidence 1 1 1222222344 77777778854444999999765333 2223321 34677788888899999999999
Q ss_pred CCeE
Q psy8748 1983 NTIV 1986 (2004)
Q Consensus 1983 tg~l 1986 (2004)
+|+.
T Consensus 231 tG~~ 234 (238)
T PF13360_consen 231 TGKV 234 (238)
T ss_dssp TTEE
T ss_pred CCCE
Confidence 9863
|
... |
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.6e-05 Score=95.08 Aligned_cols=224 Identities=14% Similarity=0.150 Sum_probs=134.4
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC-----CeEEEEEcCCCCCCCc
Q psy8748 1697 SVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD-----NMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D-----GtIrVWDl~t~~~~~~ 1771 (2004)
-+.||.|++|+|--.. ..|.||+..+...+..-...-..|....|+|.++.|+--.-. ..+.+-.+.+++
T Consensus 310 ~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~---- 384 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR---- 384 (698)
T ss_pred eEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc----
Confidence 4689999999997766 469999977655444333445678899999998877643211 233444443321
Q ss_pred ceEEEEEecCccceeeeEEeC-CCcEEEe----------ecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFID-DTTLLTG----------SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsd-d~~LlSg----------S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
.+++..-+.-.-..+.|-. +.+|+.- +.-..+.|+.++........ ..-...|...+|-|.|+.++
T Consensus 385 --~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~-velke~vi~FaWEP~gdkF~ 461 (698)
T KOG2314|consen 385 --EIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV-VELKESVIAFAWEPHGDKFA 461 (698)
T ss_pred --eeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee-eecchheeeeeeccCCCeEE
Confidence 1222111111112233333 3333221 11123455555554433222 24456788999999999887
Q ss_pred EEEC---CCeEEEEECCC-C---eEEEEEecCCCCeEEEEEeCCCCEEEEEE---CCCeEEEEEccCCceeEEEcCCCCC
Q psy8748 1841 TGSV---DKSCKLWDFRE-K---KCVQTFFGHEADVNSVCFHPSGLAFATGS---EDKTARLFDIRADQQIATYLPPNKN 1910 (2004)
Q Consensus 1841 SGS~---DGsIrIWDlrs-~---k~I~tl~~h~s~ItsIafSPdg~~LaSgS---~DGtIrIWDLrtgk~i~t~~~~~~~ 1910 (2004)
+-+. ..++.+|.+++ . ..+..+. ....+.+.|+|.|++++++. ..|.+.++|+.......+- ...|
T Consensus 462 vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh- 537 (698)
T KOG2314|consen 462 VISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH- 537 (698)
T ss_pred EEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc-Cccc-
Confidence 7653 24688888763 2 2233332 24567899999999987754 4788999998742322221 1222
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC
Q psy8748 1911 SGFTSCAVSSSGRYIFCGSDDN 1932 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGSsDG 1932 (2004)
...+.+.|+|.|+|+++++.-+
T Consensus 538 ~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 538 FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred cccccceECCCCCEEEEeeehh
Confidence 4567899999999999998643
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.3e-07 Score=108.16 Aligned_cols=250 Identities=17% Similarity=0.218 Sum_probs=172.7
Q ss_pred EEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCC-CCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeE
Q psy8748 1727 TQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR-DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKI 1805 (2004)
Q Consensus 1727 l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~-~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI 1805 (2004)
+..+.+|...|+.++--.+.+-+++++.|.+|++|.++.. +..+...+..++..|...+..+.|..+.+.+ ++.||.|
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i-~ScD~gi 806 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI-ASCDGGI 806 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee-eeccCcc
Confidence 3456789999998888778899999999999999999753 2334455677888999999999998665433 4557889
Q ss_pred EEEECCCCceeEEeec-cccCCeEEEEECC--CCCEEEEE-ECCCeEEEEECCCCeEEEEEe-----cCCCCeEEEEEeC
Q psy8748 1806 VTWNLETGQRIHEVAQ-AHIGDVVSISLSP--DGQYFVTG-SVDKSCKLWDFREKKCVQTFF-----GHEADVNSVCFHP 1876 (2004)
Q Consensus 1806 ~IWDl~tg~~i~~il~-~h~~~ItsLafSP--dg~~LaSG-S~DGsIrIWDlrs~k~I~tl~-----~h~s~ItsIafSP 1876 (2004)
.+||.--+..+..+.. ...+.+..+..-+ +...++.| +...+|+++|.+..+....++ +...-+++++..+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9999987776543321 1222233333333 34444444 678899999999887655553 3456689999999
Q ss_pred CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEE-EECCCCeeeEEEccCCCCe
Q psy8748 1877 SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHV-WDLLKTTHNGVLSGHENRV 1955 (2004)
Q Consensus 1877 dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrI-WDL~tge~l~tL~gHs~~V 1955 (2004)
.|++++++-.+|.|.+.|.++|+.+..+.+.. .....++ .|....++....|.++.+ |....+......+....+.
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpme--cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPME--CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCccc--chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence 99999999999999999999999887774332 2233333 355667777777888888 8876665554443222221
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1956 TSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1956 tsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
.- .-.-|.-++++.....+.+|.-.
T Consensus 964 hf--lqsvgpSLV~a~~Gn~lgVYad~ 988 (1034)
T KOG4190|consen 964 HF--LQSVGPSLVTAQNGNILGVYADS 988 (1034)
T ss_pred hh--hhccCceeEEeccCcEEEEEecc
Confidence 11 11235567777777777777543
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.1e-06 Score=101.21 Aligned_cols=282 Identities=16% Similarity=0.203 Sum_probs=195.2
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCC--C-ceEEEeeCCCCceEEEEEecCCCEEEEeec-CCeEEEEEcCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT--G-NKTQVIPLRSAWVMSVAFAQSGNFVACGGM-DNMCTVYDLNNR 1766 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T--g-k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~-DGtIrVWDl~t~ 1766 (2004)
|.+-|+.+.-. ..+++.+++.||.++.|.-.. | +.+..+..|-+.|.+++.+-++..+.+++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77778777654 456999999999999997433 1 334455678889999999999999999887 999999999864
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCC---cE-EEeecCCeEEEEECCCCc-eeEEeeccccCCeEEEEECCCCCEEEE
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDT---TL-LTGSGDMKIVTWNLETGQ-RIHEVAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~---~L-lSgS~DGtI~IWDl~tg~-~i~~il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
+.... ..+....+.+.++ ..++. .+ +..-.+|.+.++|-..+. .......-|..+|.++.+.+-+..+++
T Consensus 87 Dminm----iKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 87 DMINM----IKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred chhhh----cccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 32111 1111122222222 12221 22 334467999999987655 333445568899999999999999999
Q ss_pred EECCCeEEEEECCC------CeE---------EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC
Q psy8748 1842 GSVDKSCKLWDFRE------KKC---------VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1842 GS~DGsIrIWDlrs------~k~---------I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
....|.|..|.... .+. +..+........++.|+|+|..+.+-+.|.+|++++.++|+.+..+..
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 99999999998762 111 111223455678999999999999999999999999999876554411
Q ss_pred C-------------------------------CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCC---
Q psy8748 1907 P-------------------------------NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHE--- 1952 (2004)
Q Consensus 1907 ~-------------------------------~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs--- 1952 (2004)
. .....-+.+.|+..|++|+.|+-=| |++.++.++++.+.+....
T Consensus 242 ~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir 320 (558)
T KOG0882|consen 242 VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIR 320 (558)
T ss_pred cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhh
Confidence 0 0011235678999999999998776 8999999988877663111
Q ss_pred ---------------CCe-------EEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1953 ---------------NRV-------TSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1953 ---------------~~V-------tsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
..+ -.+.+.+|...++++-....+++|
T Consensus 321 ~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 321 FTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 000 112255566667777777778877
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.4e-06 Score=102.82 Aligned_cols=283 Identities=18% Similarity=0.164 Sum_probs=191.6
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCC------------CEEEEeecCCeEE
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSG------------NFVACGGMDNMCT 1759 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg------------~~LaSGS~DGtIr 1759 (2004)
...-.++.|+|.| ++|-|+ ...|.|-|..+-+.++.+..|...|+.+.|.|-. -.|+++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3346688999877 566665 4579999999999999999999999999997631 2577888889999
Q ss_pred EEEcCCCCCCCcceEEEEEecCccceeeeEEe---CC--CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI---DD--TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1760 VWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs---dd--~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
+||+... ..+..+..+.+.+..++|. ++ ..+++-.....+.+|+..+|+...+...+ .....|+.++|
T Consensus 93 l~d~~~~------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-~~iLs~f~~DP 165 (1062)
T KOG1912|consen 93 LVDFVLA------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-HEILSCFRVDP 165 (1062)
T ss_pred EEEehhh------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-CcceeeeeeCC
Confidence 9999754 3444556677777778776 22 34777788899999999999988766433 34567799999
Q ss_pred -CCCEEEEEECCCeEEEEECCC-------CeEEEEEecCCC----------------C---------eEEEEEeCCCCEE
Q psy8748 1835 -DGQYFVTGSVDKSCKLWDFRE-------KKCVQTFFGHEA----------------D---------VNSVCFHPSGLAF 1881 (2004)
Q Consensus 1835 -dg~~LaSGS~DGsIrIWDlrs-------~k~I~tl~~h~s----------------~---------ItsIafSPdg~~L 1881 (2004)
|.+.+..-+..|.+.+.+.-. ++..+.-..|.+ . ...++|+|.-+.+
T Consensus 166 fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 166 FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 777788888888888776531 222222222211 0 1135678865555
Q ss_pred EEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC----------------e
Q psy8748 1882 ATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS--GRYIFCGSDDNNVHVWDLLKT----------------T 1943 (2004)
Q Consensus 1882 aSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPd--G~~LaSGSsDGsIrIWDL~tg----------------e 1943 (2004)
+.......+.++|++-..++.....+. +.+..+.+-|+ ...++++..||.+.+|-.+.. +
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier--~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~ 323 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIER--GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGE 323 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEecc--CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcccccc
Confidence 555667889999999888887775444 34555666665 467999999999999976441 1
Q ss_pred eeEEEcc-CCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCe
Q psy8748 1944 HNGVLSG-HENRVTSISLSPN-GMALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1944 ~l~tL~g-Hs~~VtsLaFSPD-g~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
....+.. .+..+......|. ...++.--.+|.+.+|.+.+|+
T Consensus 324 Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 324 QVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred ceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 1111111 1112223333443 3334444557888999988653
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00017 Score=91.54 Aligned_cols=173 Identities=14% Similarity=0.109 Sum_probs=108.8
Q ss_pred eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-CC--CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCE
Q psy8748 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VD--KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLA 1880 (2004)
Q Consensus 1804 tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~D--GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~ 1880 (2004)
.|+++|+.+++... +. ...+......|+|||+.++... .+ ..|+++|+..+.. ..+..+........|+|||+.
T Consensus 214 ~Iyv~dl~tg~~~~-lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~ 290 (419)
T PRK04043 214 TLYKYNLYTGKKEK-IA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKR 290 (419)
T ss_pred EEEEEECCCCcEEE-Ee-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCE
Confidence 35555665554432 11 2344455678999998776543 23 4688889877764 334333333345689999998
Q ss_pred EEEEEC-CC--eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCeeeEEE
Q psy8748 1881 FATGSE-DK--TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD---------NNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1881 LaSgS~-DG--tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD---------GsIrIWDL~tge~l~tL 1948 (2004)
++..+. .| .|.++|+.+++...... .+. . ...|+|+|++++..... ..|.+.|+.++... .+
T Consensus 291 I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~-~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~L 364 (419)
T PRK04043 291 IVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK-N---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RL 364 (419)
T ss_pred EEEEECCCCCceEEEEECCCCCeEeCcc-CCC-c---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-EC
Confidence 777663 23 58888888776533321 121 1 24899999998876643 36888898877643 34
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeE
Q psy8748 1949 SGHENRVTSISLSPNGMALVTSSWD---QFVKVWQESNTIV 1986 (2004)
Q Consensus 1949 ~gHs~~VtsLaFSPDg~~LaSgS~D---GtIrIWdlstg~l 1986 (2004)
... +......|+|||+.++..+.+ ..+.+.++++...
T Consensus 365 T~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 365 TAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred CCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence 322 233468899999988776543 2477778877643
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00017 Score=87.93 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=132.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCC-eEEEEEcCCCCCCCcceEEEEEecC
Q psy8748 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN-MCTVYDLNNRDSTGAAKVIRELLGY 1781 (2004)
Q Consensus 1703 DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG-tIrVWDl~t~~~~~~~k~i~sl~gh 1781 (2004)
+|.+++..+. |...|.+...+-.++ -+|.+.|.-..+..+++-++.|..|| .+-+++.+++ ..+.+.+.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-------e~kr~e~~ 400 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-------EVKRIEKD 400 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-------eEEEeeCC
Confidence 7888888875 778888776665554 24666788888888888999999999 9999999764 24455666
Q ss_pred ccceeeeEEeCCCc-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC----eEEEEECCCC
Q psy8748 1782 EGFLSSCRFIDDTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK----SCKLWDFREK 1856 (2004)
Q Consensus 1782 ~~~Vssvafsdd~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG----sIrIWDlrs~ 1856 (2004)
-+.|.++..++++. ++++.....+.++|+++|... .+-+...+-|+.+.|||++++++-+--+| .|+++|+..+
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~-~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 77888888887654 777888899999999999865 44456677899999999999999887776 5999999988
Q ss_pred eEEEEEecCCCCeEEEEEeCCCCEEEEEEC
Q psy8748 1857 KCVQTFFGHEADVNSVCFHPSGLAFATGSE 1886 (2004)
Q Consensus 1857 k~I~tl~~h~s~ItsIafSPdg~~LaSgS~ 1886 (2004)
+..... ...+.=.+-+|.|+++++..-+.
T Consensus 480 Kiy~vT-T~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 480 KIYDVT-TPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eEEEec-CCcccccCcccCCCCcEEEEEec
Confidence 765443 33333456678899998776553
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.6e-06 Score=96.01 Aligned_cols=248 Identities=17% Similarity=0.265 Sum_probs=165.3
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----eEEEeeCCC------------CceEEEEEecCC--CEEEE
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN-----KTQVIPLRS------------AWVMSVAFAQSG--NFVAC 1751 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk-----~l~ti~~Ht------------~~ItsLafSPdg--~~LaS 1751 (2004)
..+.|+++.|...|.|+++|...|.|.+|.-.... ....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34689999999999999999999999999644322 122345553 358888897654 36677
Q ss_pred eecCCeEEEEEcCCCCC----------------C----C-----------cceEE-----EEE-ecCccceeeeEEeCCC
Q psy8748 1752 GGMDNMCTVYDLNNRDS----------------T----G-----------AAKVI-----REL-LGYEGFLSSCRFIDDT 1794 (2004)
Q Consensus 1752 GS~DGtIrVWDl~t~~~----------------~----~-----------~~k~i-----~sl-~gh~~~Vssvafsdd~ 1794 (2004)
.+.|.+|++|.+..... . . ....+ +.. ..|.-.+.++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 77899999999865310 0 0 00000 111 2355667778888787
Q ss_pred cEEEeecCCeEEEEECCCCceeEEee--ccc-----cCCeEEEEECCC-CCEEEEEECCCeEEEEECCCCeE--------
Q psy8748 1795 TLLTGSGDMKIVTWNLETGQRIHEVA--QAH-----IGDVVSISLSPD-GQYFVTGSVDKSCKLWDFREKKC-------- 1858 (2004)
Q Consensus 1795 ~LlSgS~DGtI~IWDl~tg~~i~~il--~~h-----~~~ItsLafSPd-g~~LaSGS~DGsIrIWDlrs~k~-------- 1858 (2004)
..+....|-.|.+|+++-......+. +.| ..-|++..|+|. .+.+.-.+..|.|++-|+++...
T Consensus 185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77888889999999987544332332 222 235788899994 45667777889999999984321
Q ss_pred --------EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce-eEEEcCCC----------CCCCe---EEE
Q psy8748 1859 --------VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ-IATYLPPN----------KNSGF---TSC 1916 (2004)
Q Consensus 1859 --------I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~-i~t~~~~~----------~~s~I---tsL 1916 (2004)
..-+.+-...|..+.|+++|+++++-+. -+|++||.+..+. +.++..+. ....| ..+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 0111223356888999999999887654 5799999986543 44431111 01122 357
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1917 AVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
.|+-|.+.+.+|+..+..-+|-+
T Consensus 344 sfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EecCCcccccccccccceeeecc
Confidence 88888899999988887777764
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.7e-05 Score=88.33 Aligned_cols=241 Identities=12% Similarity=0.125 Sum_probs=141.0
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCC--ceEEEee---CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1697 SVHYSGDSRHCVSGSLDGKLIIWDTWTG--NKTQVIP---LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~DGtIrVWDl~Tg--k~l~ti~---~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
.++.+.||+.||.. .|..|.|-..++. ..+.... .....=+-++|+||+..|+.+...|+|++||+...... .
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-V 79 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-E
Confidence 35677899988877 4667777655442 2222222 22233578999999999999999999999999753211 0
Q ss_pred ceEEEEE-ecCccceeeeEEeCCC-------cEEEeecCCeEEEEECCCC--c---eeE--EeeccccCCeEEEEECCCC
Q psy8748 1772 AKVIREL-LGYEGFLSSCRFIDDT-------TLLTGSGDMKIVTWNLETG--Q---RIH--EVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1772 ~k~i~sl-~gh~~~Vssvafsdd~-------~LlSgS~DGtI~IWDl~tg--~---~i~--~il~~h~~~ItsLafSPdg 1836 (2004)
....... ......|..+.|.+.. .+++-..+|.++-|-+..+ + ..+ .+...+...|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 0000111 1123456666665322 4888888998888876432 1 111 1223356789999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCE--EEEEECCC------eEEEEEccCCceeEEEcCCC
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLA--FATGSEDK------TARLFDIRADQQIATYLPPN 1908 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~--LaSgS~DG------tIrIWDLrtgk~i~t~~~~~ 1908 (2004)
+.|++||.... +++. -.+....+++-..-.+..+ .++...|+ +-.+|.+-+.+..... ..
T Consensus 160 ~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~--~~ 227 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ--GQ 227 (282)
T ss_pred CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc--cc
Confidence 99888875432 0000 0011222222222222111 11121121 1123333322221111 23
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC
Q psy8748 1909 KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951 (2004)
Q Consensus 1909 ~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH 1951 (2004)
....|..+..||||..||+...+|.|.+|++.+-........+
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 3467999999999999999999999999999887777666543
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=3e-06 Score=101.89 Aligned_cols=162 Identities=22% Similarity=0.363 Sum_probs=112.4
Q ss_pred EEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecC---CeEEEEECCCC
Q psy8748 1738 MSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGD---MKIVTWNLETG 1813 (2004)
Q Consensus 1738 tsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~D---GtI~IWDl~tg 1813 (2004)
..+..++.+++++++..+....++++..... ..+..... .....-..+.+. .+....++..- ..+.+|....+
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPK--GAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCC--cceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 3445667788888888888777777765432 11222222 222233333343 33444444444 45555555544
Q ss_pred ceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEE-ecCCCCeEEEEEeCCCCEEEEEECCCeEEE
Q psy8748 1814 QRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF-FGHEADVNSVCFHPSGLAFATGSEDKTARL 1892 (2004)
Q Consensus 1814 ~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl-~~h~s~ItsIafSPdg~~LaSgS~DGtIrI 1892 (2004)
... ...+|-..++.++|+||+++++++..|..|++-.......+..+ .||..-|..++.-++. .|++||.|+++++
T Consensus 143 ~~~--~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 143 RCE--PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRL 219 (390)
T ss_pred Ccc--hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEE
Confidence 443 34589999999999999999999999999999887766555554 4799999999988764 5899999999999
Q ss_pred EEccCCceeEEEc
Q psy8748 1893 FDIRADQQIATYL 1905 (2004)
Q Consensus 1893 WDLrtgk~i~t~~ 1905 (2004)
||+.+|+.+.++.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999999987663
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00011 Score=93.23 Aligned_cols=207 Identities=12% Similarity=0.046 Sum_probs=127.5
Q ss_pred ceeEEEEeCCCCE-EEEEeC---CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC
Q psy8748 1694 KVNSVHYSGDSRH-CVSGSL---DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~-LASGS~---DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~ 1769 (2004)
.+..-.|+|||+. ++..+. +..|+++|+.+|+...... ..+......|+|||+.++.....+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~------------- 254 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPK------------- 254 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccC-------------
Confidence 6778999999985 554433 3569999998887655443 455566778999998776543210
Q ss_pred CcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC-C--
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD-K-- 1846 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D-G-- 1846 (2004)
.+..|+++|+.++... .+ ..+.+......|+|||+.++..+.. |
T Consensus 255 -------------------------------g~~~Iy~~dl~~g~~~-~L-T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~ 301 (419)
T PRK04043 255 -------------------------------GQPDIYLYDTNTKTLT-QI-TNYPGIDVNGNFVEDDKRIVFVSDRLGYP 301 (419)
T ss_pred -------------------------------CCcEEEEEECCCCcEE-Ec-ccCCCccCccEECCCCCEEEEEECCCCCc
Confidence 1234666666655432 22 1222223345799999988777643 3
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---------CeEEEEEccCCceeEEEcCCCCCCCeEEEE
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED---------KTARLFDIRADQQIATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D---------GtIrIWDLrtgk~i~t~~~~~~~s~ItsLa 1917 (2004)
.|+++|+.+++..+.... ... ...|+|+|+.++..+.. ..|.+.|+.++... .+.... ......
T Consensus 302 ~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~---~~~~p~ 374 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANG---VNQFPR 374 (419)
T ss_pred eEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCC---CcCCeE
Confidence 588889887765333322 111 24899999998776654 26888888877643 332221 223578
Q ss_pred EcCCCCEEEEEeCCC---eEEEEECCCCeeeEEEccCCCCe
Q psy8748 1918 VSSSGRYIFCGSDDN---NVHVWDLLKTTHNGVLSGHENRV 1955 (2004)
Q Consensus 1918 fSPdG~~LaSGSsDG---sIrIWDL~tge~l~tL~gHs~~V 1955 (2004)
|+|||+.|+..+.++ .+.++++. |.....+....+.+
T Consensus 375 ~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~ 414 (419)
T PRK04043 375 FSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKI 414 (419)
T ss_pred ECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCcc
Confidence 999999887765432 36666763 33333343333333
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.6e-06 Score=94.67 Aligned_cols=196 Identities=20% Similarity=0.250 Sum_probs=116.5
Q ss_pred eeEEEEeCCCCEEEEEeCCCeEEEEECCCCceE------------EEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1695 VNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKT------------QVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1695 VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l------------~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
|+.+.++-+ -.|+++..++.+......++.+. +.+..|.++-.+-+.+-.++.+++++.||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555555433 34666666666555544333322 22223333222222333467899999999999999
Q ss_pred cCCCCCCCcceEEEEEec-CccceeeeEEeCCCcEEEe-----ecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC-
Q psy8748 1763 LNNRDSTGAAKVIRELLG-YEGFLSSCRFIDDTTLLTG-----SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD- 1835 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~g-h~~~Vssvafsdd~~LlSg-----S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd- 1835 (2004)
.+... .....+.. +.+..........+.+.++ ..-+..+.|+++..+........ ...|++++-+|.
T Consensus 118 ~~~~~-----~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~q 191 (319)
T KOG4714|consen 118 TDKDL-----ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQ 191 (319)
T ss_pred chHHH-----hhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCccc
Confidence 87521 11111111 1111111111122222222 22345667776654433222222 234999999994
Q ss_pred CCEEEEEECCCeEEEEECCCCeE-EEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccC
Q psy8748 1836 GQYFVTGSVDKSCKLWDFREKKC-VQTFFGHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1836 g~~LaSGS~DGsIrIWDlrs~k~-I~tl~~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrt 1897 (2004)
.+.+++|+.||.+.+||.+.... ...+..|+.+|+.+.|+| ++..|+++++||.+..||..+
T Consensus 192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 55778889999999999997743 445678999999999999 678899999999999999764
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.7e-06 Score=94.89 Aligned_cols=245 Identities=20% Similarity=0.319 Sum_probs=165.9
Q ss_pred CCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCc------------cceeeeEEeCC---CcEEE
Q psy8748 1734 SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYE------------GFLSSCRFIDD---TTLLT 1798 (2004)
Q Consensus 1734 t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~------------~~Vssvafsdd---~~LlS 1798 (2004)
...|+++.|...|.++++|...|.|.+|.-+... ....+....+.+|. ..|..+.|.++ ..++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeeccccc-ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4568999999999999999999999999765432 11222333344443 34556666633 34888
Q ss_pred eecCCeEEEEECCCCce-------------------e----------------------EE-eeccccCCeEEEEECCCC
Q psy8748 1799 GSGDMKIVTWNLETGQR-------------------I----------------------HE-VAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1799 gS~DGtI~IWDl~tg~~-------------------i----------------------~~-il~~h~~~ItsLafSPdg 1836 (2004)
.+.|.+|++|.+..... + .+ ....|.--|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 99999999998754310 0 00 123566678889999887
Q ss_pred CEEEEEECCCeEEEEECCCCe---EEEEEecCC-----CCeEEEEEeCC-CCEEEEEECCCeEEEEEccCCcee----EE
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKK---CVQTFFGHE-----ADVNSVCFHPS-GLAFATGSEDKTARLFDIRADQQI----AT 1903 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k---~I~tl~~h~-----s~ItsIafSPd-g~~LaSgS~DGtIrIWDLrtgk~i----~t 1903 (2004)
..++++ .|=.|.+|++.-.. .+..++.|. .-|++..|+|. .+.+...+..|.|++-|++..... ..
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777766 47789999876322 233444554 34788899994 456777888999999999843211 00
Q ss_pred E----cC------CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEccCC------------CCe---EE
Q psy8748 1904 Y----LP------PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT-THNGVLSGHE------------NRV---TS 1957 (2004)
Q Consensus 1904 ~----~~------~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg-e~l~tL~gHs------------~~V---ts 1957 (2004)
+ .. ......|..+.|+++|+++++-+ --+|++||++.. .+++++..|. +.| ..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 1 00 11134578899999999999864 458999999754 4566664442 233 45
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1958 ISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1958 LaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
+.|+.|...+.+|+..+..-+|-.
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEecCCcccccccccccceeeecc
Confidence 788999999999998887777764
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.7e-05 Score=88.43 Aligned_cols=202 Identities=12% Similarity=0.032 Sum_probs=140.4
Q ss_pred CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEE
Q psy8748 1793 DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNS 1871 (2004)
Q Consensus 1793 d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~Its 1871 (2004)
...++.|+..|...+|...+.+........+...|+-..=.- ..-.+..++.|.++++.++.-+..-.......-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 456888999999999999987766555555554443221111 1224566777888888877644322222111234789
Q ss_pred EEEeCCCCEEEEEECCCeEEEEEccCCc-eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE---
Q psy8748 1872 VCFHPSGLAFATGSEDKTARLFDIRADQ-QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGV--- 1947 (2004)
Q Consensus 1872 IafSPdg~~LaSgS~DGtIrIWDLrtgk-~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~t--- 1947 (2004)
++++++++++++.+....|..|.+.... .+...........-.+..|+.....+|++..||++.|||++.......
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 9999999999999999999999986533 222222223334456889999999999999999999999987543322
Q ss_pred --EccCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCeEEEEEEeec
Q psy8748 1948 --LSGHENRVTSISLSPNGM--ALVTSSWDQFVKVWQESNTIVWKVLKVYN 1994 (2004)
Q Consensus 1948 --L~gHs~~VtsLaFSPDg~--~LaSgS~DGtIrIWdlstg~l~k~Ik~~~ 1994 (2004)
-..|.+.+..+.|++.|. +|...-.-+.+.+-|+.++...+.+..+.
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence 235899999999998654 35555556789999999988777776554
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.4e-06 Score=100.48 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=111.9
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCCeE----EEEEecCCCCeEEEEEeCCCCEEEEEECCCe---EEEEEccCCc
Q psy8748 1827 VVSISLSPDGQYFVTGSVDKSCKLWDFREKKC----VQTFFGHEADVNSVCFHPSGLAFATGSEDKT---ARLFDIRADQ 1899 (2004)
Q Consensus 1827 ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~----I~tl~~h~s~ItsIafSPdg~~LaSgS~DGt---IrIWDLrtgk 1899 (2004)
...+..++++++++++..+....+++++.... +... .-...-+++.|..+...+..+..-|. +.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34456778889999998888877777664432 2222 12233345555555555555444444 5555544454
Q ss_pred eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q psy8748 1900 QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVL-SGHENRVTSISLSPNGMALVTSSWDQFVKV 1978 (2004)
Q Consensus 1900 ~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL-~gHs~~VtsLaFSPDg~~LaSgS~DGtIrI 1978 (2004)
..... +|-..++.++|+||+++|++++.|..|++-.......+..+ -||+..|..++.-++. .|++||.|++|++
T Consensus 144 ~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 144 CEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRL 219 (390)
T ss_pred cchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEE
Confidence 44443 67788999999999999999999999999887666555554 5799999999997654 4899999999999
Q ss_pred EECCCCeEEE
Q psy8748 1979 WQESNTIVWK 1988 (2004)
Q Consensus 1979 Wdlstg~l~k 1988 (2004)
||+.+|+...
T Consensus 220 Wd~~sgk~L~ 229 (390)
T KOG3914|consen 220 WDITSGKLLD 229 (390)
T ss_pred EecccCCccc
Confidence 9999997653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0016 Score=76.48 Aligned_cols=218 Identities=17% Similarity=0.196 Sum_probs=142.3
Q ss_pred EEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEe-cCCCEEEEeecCCeEEEEEcCCCCCCCcceE
Q psy8748 1697 SVHYSG-DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFA-QSGNFVACGGMDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1697 sLaFSP-DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafS-Pdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
+.+|.+ ++.++++--..+.|..|+..++.... +.... ..++++. ++ ..++.+...+ +.++|..++ ....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g----~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTG----KVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTT----EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCC----cEEE
Confidence 678998 67777777778999999987775543 33222 6777887 55 4455555544 566687664 2333
Q ss_pred EEEEe--c-CccceeeeEEeCCCcEEEeecC---------CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEE-
Q psy8748 1775 IRELL--G-YEGFLSSCRFIDDTTLLTGSGD---------MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVT- 1841 (2004)
Q Consensus 1775 i~sl~--g-h~~~Vssvafsdd~~LlSgS~D---------GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaS- 1841 (2004)
..... . .......+++.+++.+..+... |.|..++.. ++.. .. .........++|+|+++.|++
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~-~~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VV-ADGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EE-EEEESSEEEEEEETTSSEEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE-EE-ecCcccccceEECCcchheeec
Confidence 33332 1 3455667788777766665432 568888877 4432 22 233456789999999997764
Q ss_pred EECCCeEEEEECCCCe-------EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeE
Q psy8748 1842 GSVDKSCKLWDFREKK-------CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1842 GS~DGsIrIWDlrs~k-------~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~It 1914 (2004)
-+..+.|..|++.... ....+....+..-.+++..+|++.++....+.|.++|.+ |+.+..+..+. ..++
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t 228 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPT 228 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEE
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEE
Confidence 4567789999885321 111222222347889999999988888889999999988 88888776552 4789
Q ss_pred EEEE-cCCCCEEEEEe
Q psy8748 1915 SCAV-SSSGRYIFCGS 1929 (2004)
Q Consensus 1915 sLaf-SPdG~~LaSGS 1929 (2004)
+++| .++.+.|++.+
T Consensus 229 ~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 229 NCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEESTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEe
Confidence 9999 46766666543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.4e-06 Score=92.91 Aligned_cols=166 Identities=17% Similarity=0.159 Sum_probs=107.8
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCce-EEEeeCCCCceEEEEEecCCCEEEEeec-----CCe
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK-TQVIPLRSAWVMSVAFAQSGNFVACGGM-----DNM 1757 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~-l~ti~~Ht~~ItsLafSPdg~~LaSGS~-----DGt 1757 (2004)
+.+.+..|+++=.+-+.+-.++.+++++.||.+.+++.+.-.. .+.+......-.+.+....++++.+++. -+.
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence 4455555665555555555567899999999999998765211 1122211111223344445666655432 234
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC-
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP- 1834 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP- 1834 (2004)
.++|+++... ...........+.+++-++ ...+++|+.||.+-+||.+........+..|+.++..+-|+|
T Consensus 161 ~~a~~~~p~~------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 161 FYANTLDPIK------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred eeeecccccc------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence 5666665321 1111111122366666553 456888999999999999998777777889999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCC
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFRE 1855 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs 1855 (2004)
++..|++++.||.+.-||..+
T Consensus 235 ~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 235 NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CchheeEecCCCcEEEEcCCC
Confidence 567899999999999999764
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00032 Score=90.77 Aligned_cols=276 Identities=12% Similarity=0.077 Sum_probs=167.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCC------ceE--EEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEE
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSA------WVM--SVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI 1775 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~------~It--sLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i 1775 (2004)
+..++.++.++.+.-.|..+|+.+..+..... .+. .+... ++..++.++.+|.|..+|.++++........
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44566777789999999999998887754332 010 11111 2267888889999999999876532221111
Q ss_pred EEEecCcccee-eeEEeCCCcEEEee---------cCCeEEEEECCCCceeEEeeccccC-------------------C
Q psy8748 1776 RELLGYEGFLS-SCRFIDDTTLLTGS---------GDMKIVTWNLETGQRIHEVAQAHIG-------------------D 1826 (2004)
Q Consensus 1776 ~sl~gh~~~Vs-svafsdd~~LlSgS---------~DGtI~IWDl~tg~~i~~il~~h~~-------------------~ 1826 (2004)
.... ....+. ..... ++.+++++ .+|.+..+|..+|+...+....... .
T Consensus 140 ~~~~-~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVP-PGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcC-cceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 0000 000011 11222 34555554 3688999999999987665332110 1
Q ss_pred e-EEEEECCCCCEEEEEECCC------------------eEEEEECCCCeEEEEEecCCCCeE------EEEEe----CC
Q psy8748 1827 V-VSISLSPDGQYFVTGSVDK------------------SCKLWDFREKKCVQTFFGHEADVN------SVCFH----PS 1877 (2004)
Q Consensus 1827 I-tsLafSPdg~~LaSGS~DG------------------sIrIWDlrs~k~I~tl~~h~s~It------sIafS----Pd 1877 (2004)
+ ...++++.+..+++++.++ .|.-+|..+++....+........ ...+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1244555667888887665 799999999998877642211111 01111 13
Q ss_pred CC---EEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEE------------------eCCCeEEE
Q psy8748 1878 GL---AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCG------------------SDDNNVHV 1936 (2004)
Q Consensus 1878 g~---~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSG------------------SsDGsIrI 1936 (2004)
+. .+++++.+|.+...|.++|+.+....... ..++.+| ..++++ ..+|.+.-
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~A 370 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-----QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAA 370 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-----cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEE
Confidence 33 57888899999999999999988764221 1123333 333332 24678999
Q ss_pred EECCCCeeeEEEccCC--------CCe--EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1937 WDLLKTTHNGVLSGHE--------NRV--TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1937 WDL~tge~l~tL~gHs--------~~V--tsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
+|+.+|+.+....... .+. ..+. -.+..++.++.||.|+.+|.++|+..-..+
T Consensus 371 lD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 371 LDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 9999998887765321 111 1122 255688889999999999999987544444
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00037 Score=93.20 Aligned_cols=271 Identities=13% Similarity=0.099 Sum_probs=158.3
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
+.|.++.|.-++.-++.+..+|.|.+-|..+..... ...-...|.+++|+||+..++..+.++++.+-+-+- ......
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f-~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF-EPIAEK 146 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc-cchhcc
Confidence 689999999999989989999999999877764433 223456799999999999999998888776654321 100010
Q ss_pred eEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeE-------Eeec--cccCCeEEEEECCCCCEEEEEE
Q psy8748 1773 KVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIH-------EVAQ--AHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~-------~il~--~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
...... ...+.++.++....=.-+.-..|+... +... .....=++++|--||.++++..
T Consensus 147 ~L~~d~------------~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 147 PLDADD------------ERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred cccccc------------ccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence 110000 011223333332211111111111100 0000 1122235689999999999843
Q ss_pred -----CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE---CCCeEEEEEccCCceeEEE--cCCCCCCCe
Q psy8748 1844 -----VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS---EDKTARLFDIRADQQIATY--LPPNKNSGF 1913 (2004)
Q Consensus 1844 -----~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS---~DGtIrIWDLrtgk~i~t~--~~~~~~s~I 1913 (2004)
....|++||.+ +..-..-....+.-.+++|-|.|..+++-. .|+.|.+|.-+ |-.-..+ ..+.....+
T Consensus 215 ~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEV 292 (1265)
T ss_pred EeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccch
Confidence 23789999976 443222223334456899999999988754 35679999854 3332222 122233448
Q ss_pred EEEEEcCCCCEEEE---EeCCCeEEEEECCCCeee--EEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEC
Q psy8748 1914 TSCAVSSSGRYIFC---GSDDNNVHVWDLLKTTHN--GVLSGHENRVTSISLSPNGM-ALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1914 tsLafSPdG~~LaS---GSsDGsIrIWDL~tge~l--~tL~gHs~~VtsLaFSPDg~-~LaSgS~DGtIrIWdl 1981 (2004)
..++|+.++..|++ ......|++|-+.+..-. ..+....... +.|+|... .+..-..+|...++++
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 99999999999998 444455999998775432 2222222222 77777322 2333335565555443
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.2e-05 Score=99.90 Aligned_cols=182 Identities=16% Similarity=0.252 Sum_probs=138.8
Q ss_pred CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEE
Q psy8748 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNS 1871 (2004)
Q Consensus 1792 dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~Its 1871 (2004)
+...++.|+-...+..+|+++.+....... ..+.|+-++. +++.+.+|...|+|.+-|.++.+.++++..|.+.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 556788888888899999998876644322 2233665554 5889999999999999999999999999999999987
Q ss_pred EEEeCCCCEEEEEEC---------CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECC-
Q psy8748 1872 VCFHPSGLAFATGSE---------DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS-GRYIFCGSDDNNVHVWDLL- 1940 (2004)
Q Consensus 1872 IafSPdg~~LaSgS~---------DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPd-G~~LaSGSsDGsIrIWDL~- 1940 (2004)
+.. .|+.++++|. |.-|+|||++..+.+.-+..+. .-.-+.|+|. ...+++.+..|...+-|..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---CchhhhhcccccceEEEEecccceeeccccc
Confidence 665 5789998886 4458999999877765553332 2356778884 4567888899999999943
Q ss_pred --CC-eeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1941 --KT-THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1941 --tg-e~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
+. .-+..+......+.++.++++|+.++.|..+|.|.+|.-
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 22 122333334556999999999999999999999999983
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00031 Score=91.11 Aligned_cols=225 Identities=12% Similarity=0.170 Sum_probs=144.6
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCc-eEEEEEecCCCEEEEeecCC-----eEEEEEcCCCC
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAW-VMSVAFAQSGNFVACGGMDN-----MCTVYDLNNRD 1767 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~-ItsLafSPdg~~LaSGS~DG-----tIrVWDl~t~~ 1767 (2004)
.|+| |++.+..+|.|+.+|.|.+.+ ...+.++.++.+... |..+....+.++|++.+.|+ .+++|+++..+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4444 458889999999999998887 344555777777776 44443333446888877665 48889887532
Q ss_pred CCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCe
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGs 1847 (2004)
........ +..+++-... .....++.+++++.+-+.+++|-.+|.
T Consensus 104 ~n~sP~c~---------------------------~~~ri~~~~n--------p~~~~p~s~l~Vs~~l~~Iv~Gf~nG~ 148 (933)
T KOG2114|consen 104 KNNSPQCL---------------------------YEHRIFTIKN--------PTNPSPASSLAVSEDLKTIVCGFTNGL 148 (933)
T ss_pred CCCCccee---------------------------eeeeeeccCC--------CCCCCcceEEEEEccccEEEEEecCcE
Confidence 11110000 1112222111 123567889999999999999999999
Q ss_pred EEEEECC----CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC
Q psy8748 1848 CKLWDFR----EKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1848 IrIWDlr----s~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~ 1923 (2004)
|..+.-+ .+....-....+++|+++++..++..++.......|.+|.+. |+.+.......++....|..+++...
T Consensus 149 V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~ 227 (933)
T KOG2114|consen 149 VICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTY 227 (933)
T ss_pred EEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCc
Confidence 9998532 122222223456799999999998873333345679999998 44433333456677888989888666
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEc-cCCCCeEEE
Q psy8748 1924 YIFCGSDDNNVHVWDLLKTTHNGVLS-GHENRVTSI 1958 (2004)
Q Consensus 1924 ~LaSGSsDGsIrIWDL~tge~l~tL~-gHs~~VtsL 1958 (2004)
.+++++.. -+.+||.....+-..+. ||......+
T Consensus 228 qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 228 QFICAGSE-FLYFYDSDGRGPCFAFEVGEKKEMLVF 262 (933)
T ss_pred cEEEecCc-eEEEEcCCCcceeeeecCCCeEEEEEE
Confidence 45555444 59999987666666665 666554433
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.4e-06 Score=96.56 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=121.5
Q ss_pred EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCC-----eEEEEEecCCCCeE
Q psy8748 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK-----KCVQTFFGHEADVN 1870 (2004)
Q Consensus 1796 LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~-----k~I~tl~~h~s~It 1870 (2004)
-++.+.+..|-+-|+.+|... .+ ...+.|.++.|...++.+..|+..|.|..+|++.+ .+...+ .|...|+
T Consensus 227 hfs~G~sqqv~L~nvetg~~q--sf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvt 302 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQ--SF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVT 302 (425)
T ss_pred eecccccceeEEEEeeccccc--cc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchh
Confidence 366777788999999988653 22 36678999999998999999999999999999865 233333 6889999
Q ss_pred EEEEeC-CCCEEEEEECCCeEEEEEccCCce---eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q psy8748 1871 SVCFHP-SGLAFATGSEDKTARLFDIRADQQ---IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNG 1946 (2004)
Q Consensus 1871 sIafSP-dg~~LaSgS~DGtIrIWDLrtgk~---i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~ 1946 (2004)
++..-. ++.++++.+.+|+|.+||.+--++ +..+..+.......-+-+.+....+++++.|...+||.++.|..+.
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 998777 788999999999999999987776 7777555444444555677788889999999999999999999988
Q ss_pred EEcc
Q psy8748 1947 VLSG 1950 (2004)
Q Consensus 1947 tL~g 1950 (2004)
++..
T Consensus 383 tipf 386 (425)
T KOG2695|consen 383 TIPF 386 (425)
T ss_pred ccCC
Confidence 8753
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0015 Score=75.41 Aligned_cols=263 Identities=16% Similarity=0.191 Sum_probs=150.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCc
Q psy8748 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYE 1782 (2004)
Q Consensus 1703 DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~ 1782 (2004)
-|++++.|+..|.+++.+.++|.....+.....--......+++..+..|+.|++.+..|..+. ..+.......
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~------~cVykskcgG 135 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY------GCVYKSKCGG 135 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc------ceEEecccCC
Confidence 3678999999999999999999888877654432233456778999999999999999998754 2333333333
Q ss_pred cceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEE--EEECCCCCEEEEEECCCeEEEEECCCCeEE
Q psy8748 1783 GFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVS--ISLSPDGQYFVTGSVDKSCKLWDFREKKCV 1859 (2004)
Q Consensus 1783 ~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~Its--LafSPdg~~LaSGS~DGsIrIWDlrs~k~I 1859 (2004)
+...+-...+ ++.++++...|.+.--..+......-......++|.+ ++ -+..+..++-||.+.-+| ..|+.+
T Consensus 136 ~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qv 211 (354)
T KOG4649|consen 136 GTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQV 211 (354)
T ss_pred ceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCcee---ccceEEEEEeccEEEEEc-CCCcEE
Confidence 3333333333 4557777777777766666553221111112223322 11 244566677788877777 556655
Q ss_pred EEEecCCCCeEE-EEEe-CCCCEEEEEECCCe--------EEEEEccCCceeEEEcCCCCCCCeEEEEEcC----CCCEE
Q psy8748 1860 QTFFGHEADVNS-VCFH-PSGLAFATGSEDKT--------ARLFDIRADQQIATYLPPNKNSGFTSCAVSS----SGRYI 1925 (2004)
Q Consensus 1860 ~tl~~h~s~Its-IafS-Pdg~~LaSgS~DGt--------IrIWDLrtgk~i~t~~~~~~~s~ItsLafSP----dG~~L 1925 (2004)
..+ ...++|.. -+-+ |..+.+..+..+.. --+|..++|.....+..+.- ..+++. ..+++
T Consensus 212 wr~-~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l-----~F~~h~~~~S~~~ll 285 (354)
T KOG4649|consen 212 WRP-ATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKL-----RFDLHSPGISYPKLL 285 (354)
T ss_pred Eee-cCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCccc-----ceeccCCCCcchhhh
Confidence 544 23333321 1111 33333444433322 33566555544443322211 112221 14567
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEccCCCCeEEE---E-----E-cC---CCCEEEEEECCCeEEEEECCCC
Q psy8748 1926 FCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI---S-----L-SP---NGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1926 aSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsL---a-----F-SP---Dg~~LaSgS~DGtIrIWdlstg 1984 (2004)
..++.||.+.|.-++.. +.....|.+.+..+ . | +| +| +|+.|+.|..|+-||+++.
T Consensus 286 ~~~s~dgkv~il~~~~s--l~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 286 RRSSGDGKVMILMTSKS--LAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred hhhcCCCcEEEEEeccc--ccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEecccc
Confidence 78889999888854332 33334444433322 2 2 22 34 5888899999999999874
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00094 Score=78.47 Aligned_cols=194 Identities=13% Similarity=0.191 Sum_probs=128.4
Q ss_pred EeCCCcEEEeecCCeEEEEECCCCc----eeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEec-
Q psy8748 1790 FIDDTTLLTGSGDMKIVTWNLETGQ----RIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG- 1864 (2004)
Q Consensus 1790 fsdd~~LlSgS~DGtI~IWDl~tg~----~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~- 1864 (2004)
..+++.+++.-.|..|.+-..++.- ....+.+.....-..++|+||+..|+.+...|+|++||+.... +..+..
T Consensus 5 ~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~ 83 (282)
T PF15492_consen 5 LSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPA 83 (282)
T ss_pred ecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcc
Confidence 3456677777777777776544321 1112233344456789999999999999999999999987533 333322
Q ss_pred ------CCCCeEEEEEeCCC------CEEEEEECCCeEEEEEccC-----CceeEEEcCC-CCCCCeEEEEEcCCCCEEE
Q psy8748 1865 ------HEADVNSVCFHPSG------LAFATGSEDKTARLFDIRA-----DQQIATYLPP-NKNSGFTSCAVSSSGRYIF 1926 (2004)
Q Consensus 1865 ------h~s~ItsIafSPdg------~~LaSgS~DGtIrIWDLrt-----gk~i~t~~~~-~~~s~ItsLafSPdG~~La 1926 (2004)
-...|.++.|.+.. ..|++-..+|.++-|-+.. .+....+... ....+|.++.++|..+.|+
T Consensus 84 ~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLl 163 (282)
T PF15492_consen 84 MSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLL 163 (282)
T ss_pred cccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEE
Confidence 12456777776532 2466677788888777532 2333444332 2356899999999988888
Q ss_pred EEeCC----C-------eEEEEECCCCeeeEE--------------------------E---ccCCCCeEEEEEcCCCCE
Q psy8748 1927 CGSDD----N-------NVHVWDLLKTTHNGV--------------------------L---SGHENRVTSISLSPNGMA 1966 (2004)
Q Consensus 1927 SGSsD----G-------sIrIWDL~tge~l~t--------------------------L---~gHs~~VtsLaFSPDg~~ 1966 (2004)
+|+.. + -+..|.+-++.+... + ......|..|..||||..
T Consensus 164 VgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~ 243 (282)
T PF15492_consen 164 VGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSL 243 (282)
T ss_pred EeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCE
Confidence 87641 1 266676533221111 0 113557899999999999
Q ss_pred EEEEECCCeEEEEECCCC
Q psy8748 1967 LVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1967 LaSgS~DGtIrIWdlstg 1984 (2004)
||+...+|.|.+|++.+-
T Consensus 244 La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 244 LACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEEEcCCeEEEEecCcc
Confidence 999999999999999884
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.7e-05 Score=96.11 Aligned_cols=210 Identities=17% Similarity=0.122 Sum_probs=154.0
Q ss_pred cCccceeeeEEeCCCcEEEeecCCeEEEEECCC--CceeEEeeccccCCeEEEEECCCCCEEEEEEC-CCeEEEEECCCC
Q psy8748 1780 GYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLET--GQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV-DKSCKLWDFREK 1856 (2004)
Q Consensus 1780 gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~t--g~~i~~il~~h~~~ItsLafSPdg~~LaSGS~-DGsIrIWDlrs~ 1856 (2004)
-|.+.++.+.....+.+++++.||.++.|.... +......+..|.+.|.+++.+-+|..+.+++. |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 467778888777888999999999999998654 33333446678889999999999999999777 999999999876
Q ss_pred eEEEEEecCCCCeEEEEEeC-CC---CEEE-EEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC
Q psy8748 1857 KCVQTFFGHEADVNSVCFHP-SG---LAFA-TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD 1931 (2004)
Q Consensus 1857 k~I~tl~~h~s~ItsIafSP-dg---~~La-SgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD 1931 (2004)
..+..++-. .....+.|.. .| ..++ +.-.+|.+.++|-....+...+...-|..+|.++.+.+-+..++++...
T Consensus 87 DminmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccc-cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 544333211 1111222222 22 1233 3345789999998766655555556677899999999999999999999
Q ss_pred CeEEEEECCC------CeeeEEE---------ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q psy8748 1932 NNVHVWDLLK------TTHNGVL---------SGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVL 1990 (2004)
Q Consensus 1932 GsIrIWDL~t------ge~l~tL---------~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~I 1990 (2004)
|.|.-|.... .+....+ .......+++.|+|+|..+.+-+.|..|+++...+|+..+.+
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 9999998762 1111111 224566899999999999999999999999999998654433
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.001 Score=83.73 Aligned_cols=212 Identities=15% Similarity=0.120 Sum_probs=121.2
Q ss_pred ccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee--C------CCCceEEEEEec-----CC
Q psy8748 1680 VKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP--L------RSAWVMSVAFAQ-----SG 1746 (2004)
Q Consensus 1680 lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~--~------Ht~~ItsLafSP-----dg 1746 (2004)
-.+.|..-++...++|++++.| |=.++|.|..+|.+.|.|++....+..-. . ....|+++.|.- |+
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred cccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 3467777888889999999997 55699999999999999997777776532 2 345688898862 22
Q ss_pred ---CEEEEeecCCeEEEEEcCC-CCCCCcceEEEEEecCccceeeeEEe-CC---------------------CcEEEee
Q psy8748 1747 ---NFVACGGMDNMCTVYDLNN-RDSTGAAKVIRELLGYEGFLSSCRFI-DD---------------------TTLLTGS 1800 (2004)
Q Consensus 1747 ---~~LaSGS~DGtIrVWDl~t-~~~~~~~k~i~sl~gh~~~Vssvafs-dd---------------------~~LlSgS 1800 (2004)
-.+++|+..|.+.+|.+.- ...............+.+.+..+... .+ ..+++..
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 4789999999999998852 21111122222222344444443322 10 1256667
Q ss_pred cCCeEEEEECCCCceeEEeeccccCCeEEEEE-----CCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC----CCeEE
Q psy8748 1801 GDMKIVTWNLETGQRIHEVAQAHIGDVVSISL-----SPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE----ADVNS 1871 (2004)
Q Consensus 1801 ~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf-----SPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~----s~Its 1871 (2004)
.+..++++...+.+..++.+. .......+.+ ...+..|++-..+|.|++|.+..-+.+....-.. ..+..
T Consensus 233 Se~~irv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred cccceEEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 788999999998887776652 2222333444 2356788888999999999999988887775432 23445
Q ss_pred EEEeCCCCEEEEEECCCeEEEEE
Q psy8748 1872 VCFHPSGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1872 IafSPdg~~LaSgS~DGtIrIWD 1894 (2004)
..++++|..++-.+ ...+.++.
T Consensus 312 ssis~~Gdi~~~~g-psE~~l~s 333 (395)
T PF08596_consen 312 SSISRNGDIFYWTG-PSEIQLFS 333 (395)
T ss_dssp -EE-TTS-EEEE-S-SSEEEEEE
T ss_pred cEECCCCCEEEEeC-cccEEEEE
Confidence 66788887665554 33444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.1e-05 Score=92.87 Aligned_cols=150 Identities=15% Similarity=0.185 Sum_probs=116.3
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCC-----ceeEEEcCCCCCCCeE
Q psy8748 1840 VTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRAD-----QQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtg-----k~i~t~~~~~~~s~It 1914 (2004)
++.+.+-.|-+-|+.++.. ..+ ...+.|.+..|...++.++.|+.+|.|..+|++.. .+...+ .|...|+
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl---yh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL---YHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecccc-ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE---EcCcchh
Confidence 3444566788889887753 333 36788999999999999999999999999999865 223333 3557788
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCee---eEEEccCCCCeEEEEE--cCCCCEEEEEECCCeEEEEECCCCeEEE
Q psy8748 1915 SCAVSS-SGRYIFCGSDDNNVHVWDLLKTTH---NGVLSGHENRVTSISL--SPNGMALVTSSWDQFVKVWQESNTIVWK 1988 (2004)
Q Consensus 1915 sLafSP-dG~~LaSGSsDGsIrIWDL~tge~---l~tL~gHs~~VtsLaF--SPDg~~LaSgS~DGtIrIWdlstg~l~k 1988 (2004)
++..-. ++.+|.+.+.+|.|.+||.+--++ +..+.||-..-.-+-+ .+....++++|+|...|||.++.|.+..
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 887766 788999999999999999987766 7788888665444433 4566788999999999999999998777
Q ss_pred EEEeec
Q psy8748 1989 VLKVYN 1994 (2004)
Q Consensus 1989 ~Ik~~~ 1994 (2004)
.++...
T Consensus 383 tipf~~ 388 (425)
T KOG2695|consen 383 TIPFPY 388 (425)
T ss_pred ccCCCC
Confidence 776443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0049 Score=74.39 Aligned_cols=233 Identities=18% Similarity=0.165 Sum_probs=142.8
Q ss_pred eeEEEEeC-CCCEEEEEeCCCe-EEEEECCCCceEEEeeCCCCce--EEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1695 VNSVHYSG-DSRHCVSGSLDGK-LIIWDTWTGNKTQVIPLRSAWV--MSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1695 VtsLaFSP-DG~~LASGS~DGt-IrVWDl~Tgk~l~ti~~Ht~~I--tsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
...++.+| ++..++.+-.-|+ ..+||..+++....+....+.- =.-+|++||++|++.-.|-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~-------------- 72 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDY-------------- 72 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecccc--------------
Confidence 34778888 4555666666554 7889999999887765433321 1347999999988864320
Q ss_pred cceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE--------
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG-------- 1842 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG-------- 1842 (2004)
.+..|.|-+||...+-.....+..+.-.-..+.+.|||+.|+++
T Consensus 73 ----------------------------~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thp 124 (305)
T PF07433_consen 73 ----------------------------ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHP 124 (305)
T ss_pred ----------------------------CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCc
Confidence 01223444444442211112222333333445555555544443
Q ss_pred ----------ECCCeEEEEECCCCeEEEEEe----cCCCCeEEEEEeCCCCEEEEEECCCe-------EEEEEccCCcee
Q psy8748 1843 ----------SVDKSCKLWDFREKKCVQTFF----GHEADVNSVCFHPSGLAFATGSEDKT-------ARLFDIRADQQI 1901 (2004)
Q Consensus 1843 ----------S~DGsIrIWDlrs~k~I~tl~----~h~s~ItsIafSPdg~~LaSgS~DGt-------IrIWDLrtgk~i 1901 (2004)
+.+.++...|..+++.+.... -|...|+.+++.++|..++..-..|. |-+++. +..+
T Consensus 125 d~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~ 202 (305)
T PF07433_consen 125 DSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGAL 202 (305)
T ss_pred ccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcc
Confidence 234467777888888776633 36778999999999977666655443 334433 3323
Q ss_pred EEEcCC-----CCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q psy8748 1902 ATYLPP-----NKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQF 1975 (2004)
Q Consensus 1902 ~t~~~~-----~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGt 1975 (2004)
..+..+ .-...+-+++++.+|.++++.+ ..|.+.+||..+++.+.... -..+..++-.+++ +++|.+. |.
T Consensus 203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~-G~ 278 (305)
T PF07433_consen 203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQ-GQ 278 (305)
T ss_pred eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCC-cc
Confidence 333221 1235688999999999887665 46789999999999887664 3456777777776 6666553 44
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00022 Score=91.92 Aligned_cols=183 Identities=14% Similarity=0.159 Sum_probs=127.9
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
.+.++|++++ +++++-|+.+|.|++++.. |.. .+...|... ..+|.++++|+.||.|.|-.+.+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~--- 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE--- 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc---
Confidence 4677888887 6789999999999999853 333 333344433 56799999999999999998866431
Q ss_pred ceEEEEEecCccceeeeEEeCC------CcEEEeecCCeEEEEECCC-CceeEEeeccccCCeEEEEECCCCCEEEEEEC
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDD------TTLLTGSGDMKIVTWNLET-GQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV 1844 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd------~~LlSgS~DGtI~IWDl~t-g~~i~~il~~h~~~ItsLafSPdg~~LaSGS~ 1844 (2004)
........++.++++.++ .++++|+..| +.++.-+- |...........|+|.++.|. |++++-++.
T Consensus 106 ----~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 106 ----ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred ----ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence 112234556777777765 5699999998 77765432 111112345678899999997 888888887
Q ss_pred CCeEEEEECCCCeEEEEEecCCCC------eEEEEEeCCCCEEEEEECCCeEEEEEccC
Q psy8748 1845 DKSCKLWDFREKKCVQTFFGHEAD------VNSVCFHPSGLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1845 DGsIrIWDlrs~k~I~tl~~h~s~------ItsIafSPdg~~LaSgS~DGtIrIWDLrt 1897 (2004)
+| |++||...++.+..+...... ...+.|.++.+.++ | ...+|+|..++.
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-WGDSVKICSIKK 234 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-cCCeEEEEEEec
Confidence 66 899999998887776544333 33577877765444 3 344788888873
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.8e-06 Score=104.08 Aligned_cols=218 Identities=16% Similarity=0.254 Sum_probs=149.4
Q ss_pred ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEE-eecC
Q psy8748 1725 NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLT-GSGD 1802 (2004)
Q Consensus 1725 k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlS-gS~D 1802 (2004)
+..+++..|+...+|++|+-+.++|++|+..|.|++|++.++. ......+|...++.+.-+ ++...++ ++..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~------~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS------MEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc------ccccccccccccccccccCCcceeeeecccc
Confidence 4445677888999999999999999999999999999998764 334556788888888776 3444443 3333
Q ss_pred C-eEEEEECCC-CceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe----cCCCCeEEEEEeC
Q psy8748 1803 M-KIVTWNLET-GQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF----GHEADVNSVCFHP 1876 (2004)
Q Consensus 1803 G-tI~IWDl~t-g~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~----~h~s~ItsIafSP 1876 (2004)
. -..+|++.+ +...+.+ ..-.++.|+.....-+.|+......+||+.++....++. +....-++..|+|
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred CchHHHhccccccCccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 3 577899865 2233222 234578888765555667766789999999988766632 2223347889999
Q ss_pred CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeE
Q psy8748 1877 SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVT 1956 (2004)
Q Consensus 1877 dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~Vt 1956 (2004)
+...++ .|| .+||++..+.+..|.... ....-.|+|+|.-+++-+ .|||+++.+.++....- .-.
T Consensus 1241 ~D~LIl---ndG--vLWDvR~~~aIh~FD~ft---~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L--dqc 1305 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIPEAIHRFDQFT---DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL--DQC 1305 (1516)
T ss_pred CcceEe---eCc--eeeeeccHHHHhhhhhhe---ecccccccCCCceEEeec-----hhhhhHHHHHHhcCccc--cce
Confidence 987766 456 589999887776663221 122346999999998875 48999988776654321 124
Q ss_pred EEEEcCCCCEEE
Q psy8748 1957 SISLSPNGMALV 1968 (2004)
Q Consensus 1957 sLaFSPDg~~La 1968 (2004)
.+.|+..|..++
T Consensus 1306 ~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMY 1317 (1516)
T ss_pred EEEeccCccchh
Confidence 456666665444
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.013 Score=76.62 Aligned_cols=284 Identities=12% Similarity=0.083 Sum_probs=169.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCC-CceEE----------EEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS-AWVMS----------VAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht-~~Its----------LafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
+..++.++.++.|+-.|..+|+.+..+.... ..+.. +++ .+..++.++.|+.+...|..+++.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778899999999999988775321 11111 122 2456778888999999998877543322
Q ss_pred eEEEEEecCccceeeeEEeCCCcEEEeec------CCeEEEEECCCCceeEEeecccc----------------------
Q psy8748 1773 KVIRELLGYEGFLSSCRFIDDTTLLTGSG------DMKIVTWNLETGQRIHEVAQAHI---------------------- 1824 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafsdd~~LlSgS~------DGtI~IWDl~tg~~i~~il~~h~---------------------- 1824 (2004)
.... .. ....+.+.-...++.++++.. +|.|..+|.++|+.+.+......
T Consensus 147 ~~~~-~~-~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGD-YK-AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccc-cc-ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 2110 00 001111111112445666543 68999999999987765422111
Q ss_pred --------CCe-EEEEECCCCCEEEEEECC-----C-----------eEEEEECCCCeEEEEEecCCCCeEE--------
Q psy8748 1825 --------GDV-VSISLSPDGQYFVTGSVD-----K-----------SCKLWDFREKKCVQTFFGHEADVNS-------- 1871 (2004)
Q Consensus 1825 --------~~I-tsLafSPdg~~LaSGS~D-----G-----------sIrIWDlrs~k~I~tl~~h~s~Its-------- 1871 (2004)
+.+ ..++++++.++++.+... + .|.-.|.++++....++.....+..
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 111 134777777777776622 2 6777889999988777653332222
Q ss_pred -EEEeCCCC---EEEEEECCCeEEEEEccCCceeEEEcC----------C-CC-----------------CC--------
Q psy8748 1872 -VCFHPSGL---AFATGSEDKTARLFDIRADQQIATYLP----------P-NK-----------------NS-------- 1911 (2004)
Q Consensus 1872 -IafSPdg~---~LaSgS~DGtIrIWDLrtgk~i~t~~~----------~-~~-----------------~s-------- 1911 (2004)
+.+..+|+ .++.+..+|.+++.|.++|+.+..... . .. ..
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~ 384 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFL 384 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCc
Confidence 22224665 688999999999999999987522100 0 00 00
Q ss_pred ---CeEEEEEcCCCCEEEEEeCC---------------------------------CeEEEEECCCCeeeEEEccCCCCe
Q psy8748 1912 ---GFTSCAVSSSGRYIFCGSDD---------------------------------NNVHVWDLLKTTHNGVLSGHENRV 1955 (2004)
Q Consensus 1912 ---~ItsLafSPdG~~LaSGSsD---------------------------------GsIrIWDL~tge~l~tL~gHs~~V 1955 (2004)
.-..++++|+..++++...+ |.|.-+|+.+++............
T Consensus 385 Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~ 464 (527)
T TIGR03075 385 GGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLW 464 (527)
T ss_pred CCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCC
Confidence 00125677766666544333 457778888888777665322111
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1956 TSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1956 tsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
.+. ..-.+.+++.++.||.++.+|.++|+.+-..+.
T Consensus 465 ~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 465 GGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred Ccc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 221 112455777788899999999999975544443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00054 Score=82.83 Aligned_cols=244 Identities=14% Similarity=0.065 Sum_probs=144.7
Q ss_pred cccccccccceeEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCC-CEEEEeecCCeEEEEE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSG-NFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg-~~LaSGS~DGtIrVWD 1762 (2004)
..-+.+|...|.+++|||..+ ++..++.+..|+|.|+++...+..+..+ ..+.+++|.-|. +++..|..+|.|.+||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 446778999999999999776 7888999999999999999999888888 679999998765 5788888999999999
Q ss_pred cCCCCCCCcceEEEEEec--CccceeeeEEe-------CCCcEEEeecCCeEEEEECCC--CceeEEeeccccCCeEEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLG--YEGFLSSCRFI-------DDTTLLTGSGDMKIVTWNLET--GQRIHEVAQAHIGDVVSIS 1831 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~g--h~~~Vssvafs-------dd~~LlSgS~DGtI~IWDl~t--g~~i~~il~~h~~~ItsLa 1831 (2004)
++..+... ..+.+ ...++..++.. .++.++....+ ...|++.- +........+..+...++.
T Consensus 265 ~R~~~~~~-----~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 265 MRQPEGPL-----MELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred ccCCCchH-----hhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeee
Confidence 98653211 11111 11223322222 22333333332 45565532 2222222224456667777
Q ss_pred ECCCCCEEEEEECCC-------e-EEEEECCCCeEEEEEe-cC-CCC------eEEEEEeCCCCEEE-EEECCCeEEEEE
Q psy8748 1832 LSPDGQYFVTGSVDK-------S-CKLWDFREKKCVQTFF-GH-EAD------VNSVCFHPSGLAFA-TGSEDKTARLFD 1894 (2004)
Q Consensus 1832 fSPdg~~LaSGS~DG-------s-IrIWDlrs~k~I~tl~-~h-~s~------ItsIafSPdg~~La-SgS~DGtIrIWD 1894 (2004)
+++..+.++.....+ . +.--|.++|.++...+ ++ .+. -..+.-.++.++++ +|...+.+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 777556555544331 0 1112333444333221 11 110 01122233445544 455567899999
Q ss_pred ccCCceeEEEcCCCCCCCeEEEEEcC-CC-CEEEEEeCCCeEEEEECC
Q psy8748 1895 IRADQQIATYLPPNKNSGFTSCAVSS-SG-RYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1895 Lrtgk~i~t~~~~~~~s~ItsLafSP-dG-~~LaSGSsDGsIrIWDL~ 1940 (2004)
..++....++... .++..++... +| .+|++- .|..++||..+
T Consensus 418 ~~s~evvQ~l~~~---epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSFEVVQTLALS---EPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred cchhheeeecccC---cceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 9999998888543 4565555443 33 455554 56678887643
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0023 Score=85.92 Aligned_cols=210 Identities=17% Similarity=0.211 Sum_probs=142.5
Q ss_pred ccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECC----C-
Q psy8748 1782 EGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR----E- 1855 (2004)
Q Consensus 1782 ~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlr----s- 1855 (2004)
.+.|.++.|. +.+.++.+..+|.|.+.|..+.... +...-...|.+++|+||+..++..+.++++.+-+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 4577777777 5667889999999999988876543 344567789999999999999999888877665321 0
Q ss_pred ------------------CeEEEEEecCC---------------------CCeEEEEEeCCCCEEEEEE----CC-CeEE
Q psy8748 1856 ------------------KKCVQTFFGHE---------------------ADVNSVCFHPSGLAFATGS----ED-KTAR 1891 (2004)
Q Consensus 1856 ------------------~k~I~tl~~h~---------------------s~ItsIafSPdg~~LaSgS----~D-GtIr 1891 (2004)
|+....+.+.. +.=+.|.|-.||.+|++.. .+ .+|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 11111222111 1123589999999998843 23 7899
Q ss_pred EEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCeeeEE----EccCCCCeEEEEEcCCC
Q psy8748 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS---DDNNVHVWDLLKTTHNGV----LSGHENRVTSISLSPNG 1964 (2004)
Q Consensus 1892 IWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS---sDGsIrIWDL~tge~l~t----L~gHs~~VtsLaFSPDg 1964 (2004)
+||.. |..-..- ....+--.+++|-|.|..+++-. +|+.|.+|.- +|-.... +.....+|..++|+.++
T Consensus 226 V~drE-g~Lns~s--e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 226 VYDRE-GALNSTS--EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred Eeccc-chhhccc--CcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCC
Confidence 99976 4332222 12223456899999999998754 4567999984 4433332 23344559999999999
Q ss_pred CEEEE---EECCCeEEEEECCCCeEEEEEEeecCCCC
Q psy8748 1965 MALVT---SSWDQFVKVWQESNTIVWKVLKVYNLEKK 1998 (2004)
Q Consensus 1965 ~~LaS---gS~DGtIrIWdlstg~l~k~Ik~~~~h~~ 1998 (2004)
..|+. +.....|++|-..+- .|-.-+.+.....
T Consensus 302 diLAv~~~~~e~~~v~lwt~~Ny-hWYLKq~l~~~~~ 337 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNY-HWYLKQELQFSQK 337 (1265)
T ss_pred CceeeeecccccceEEEEEecCe-EEEEEEEEecccc
Confidence 99988 555566999998875 4766666655444
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0046 Score=80.27 Aligned_cols=239 Identities=15% Similarity=0.156 Sum_probs=143.5
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCCCc-----eE-EEEEecCCCEEEEee---------cCCeEEEEEcCCCCCC
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAW-----VM-SVAFAQSGNFVACGG---------MDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~-----It-sLafSPdg~~LaSGS---------~DGtIrVWDl~t~~~~ 1769 (2004)
..++.++.+|.|+-+|.++|+.+..+...... +. +..+. +..++.++ .+|.+..+|..+++..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 56777888999999999999999887654321 11 11222 34455553 3678888888776533
Q ss_pred CcceEEEE----Ee---------cC-cccee-eeEEe-CCCcEEEeecCC------------------eEEEEECCCCce
Q psy8748 1770 GAAKVIRE----LL---------GY-EGFLS-SCRFI-DDTTLLTGSGDM------------------KIVTWNLETGQR 1815 (2004)
Q Consensus 1770 ~~~k~i~s----l~---------gh-~~~Vs-svafs-dd~~LlSgS~DG------------------tI~IWDl~tg~~ 1815 (2004)
........ .. .. ...+. ...+. .++.+++++.++ .|.-+|.++|+.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 22211100 00 00 01111 12222 345677777665 799999999998
Q ss_pred eEEeeccccC-----CeEEEEEC----CCCC---EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEE
Q psy8748 1816 IHEVAQAHIG-----DVVSISLS----PDGQ---YFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFAT 1883 (2004)
Q Consensus 1816 i~~il~~h~~-----~ItsLafS----Pdg~---~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaS 1883 (2004)
..+....+.. ......+. -++. .+++++.+|.+...|.++++.+...... ...++.+| ..++.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv 343 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYL 343 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEE
Confidence 8765322211 00000111 1333 6788889999999999999987765421 11233333 23333
Q ss_pred E------------------ECCCeEEEEEccCCceeEEEcCCCCC------CCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1884 G------------------SEDKTARLFDIRADQQIATYLPPNKN------SGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1884 g------------------S~DGtIrIWDLrtgk~i~t~~~~~~~------s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
+ ..+|.+.-.|..+|+.+.+....... .....-.....+..+++|+.||.|+.+|.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEEC
Confidence 2 24688999999999998887543111 11111111125678999999999999999
Q ss_pred CCCeeeEEEcc
Q psy8748 1940 LKTTHNGVLSG 1950 (2004)
Q Consensus 1940 ~tge~l~tL~g 1950 (2004)
.+|+.+...+-
T Consensus 424 ~tG~~lW~~~~ 434 (488)
T cd00216 424 TTGKELWKFRT 434 (488)
T ss_pred CCCceeeEEEC
Confidence 99999988764
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.1e-05 Score=64.59 Aligned_cols=38 Identities=34% Similarity=0.677 Sum_probs=36.0
Q ss_pred cccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEE
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD 1720 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWD 1720 (2004)
++++++.+|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00053 Score=88.59 Aligned_cols=183 Identities=15% Similarity=0.177 Sum_probs=129.2
Q ss_pred ceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q psy8748 1784 FLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863 (2004)
Q Consensus 1784 ~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~ 1863 (2004)
.++|+++ .+..++.|+.+|.|++++....- . .. ..|... ..+|.++++|+.||+|.|..+-+.+...++
T Consensus 41 ~is~~av-~~~~~~~GtH~g~v~~~~~~~~~-~-~~-~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~- 109 (846)
T KOG2066|consen 41 AISCCAV-HDKFFALGTHRGAVYLTTCQGNP-K-TN-FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY- 109 (846)
T ss_pred HHHHHHh-hcceeeeccccceEEEEecCCcc-c-cc-cccccc------ccCCceEEEecCCCcEEEeeccCCccceeE-
Confidence 3444444 45678899999999999876443 1 11 123222 568999999999999999998887766555
Q ss_pred cCCCCeEEEEEeCC-----CCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1864 GHEADVNSVCFHPS-----GLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1864 ~h~s~ItsIafSPd-----g~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
....++.+++++|+ .+.+++||.-| +.++.-+-.............++|.++.|. |++||=++++| |+|||
T Consensus 110 df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd 185 (846)
T KOG2066|consen 110 DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYD 185 (846)
T ss_pred ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEe
Confidence 34678999999997 56799999888 887764432222222334566889999995 78898888777 99999
Q ss_pred CCCCeeeEEEccCCCCe------EEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1939 LLKTTHNGVLSGHENRV------TSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1939 L~tge~l~tL~gHs~~V------tsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
+.+++.+..+......+ ..+.|.++.+ |+.|- .-+|+|..+..
T Consensus 186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIKK 234 (846)
T ss_pred ccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEec
Confidence 99988887775433333 4567776654 44443 34688888873
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.012 Score=71.81 Aligned_cols=270 Identities=15% Similarity=0.150 Sum_probs=156.9
Q ss_pred CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee----------cCCeEEEEEcCCCCCCCcceEEEEEecC-c
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG----------MDNMCTVYDLNNRDSTGAAKVIRELLGY-E 1782 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS----------~DGtIrVWDl~t~~~~~~~k~i~sl~gh-~ 1782 (2004)
++++|+|..+++.+..+... ..-.+..+|+++.+.+++ ....|.+||..+.....+ ..+... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E----I~iP~k~R 90 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE----IEIPPKPR 90 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE----EEETTS-B
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce----EecCCcch
Confidence 47999999999888777642 233467899999887743 345799999987532111 111111 1
Q ss_pred ----cceeeeEEeCCC-cEEE--eecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECC-
Q psy8748 1783 ----GFLSSCRFIDDT-TLLT--GSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR- 1854 (2004)
Q Consensus 1783 ----~~Vssvafsdd~-~LlS--gS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlr- 1854 (2004)
........+.++ .+++ .+-...|.+.|+..++.+..+.. .+ +..+--. ..+-|.+-|.||.+.-..+.
T Consensus 91 ~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PG-C~~iyP~-~~~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 91 AQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PG-CWLIYPS-GNRGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp --BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TS-EEEEEEE-ETTEEEEEETTSCEEEEEETS
T ss_pred heecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CC-EEEEEec-CCCceEEEecCCceEEEEECC
Confidence 111223334333 3332 33445677778877777655522 11 1222111 23457888899999988887
Q ss_pred CCeEEEEE----ecCCCCe-EEEEEeCCCCEEEEEECCCeEEEEEccCCceeE--EEcCCC--------CCCCeEEEEEc
Q psy8748 1855 EKKCVQTF----FGHEADV-NSVCFHPSGLAFATGSEDKTARLFDIRADQQIA--TYLPPN--------KNSGFTSCAVS 1919 (2004)
Q Consensus 1855 s~k~I~tl----~~h~s~I-tsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~--t~~~~~--------~~s~ItsLafS 1919 (2004)
.|+...+. .....++ ..-++...+..++.-+.+|.|+-.|+....... .+.... ..++..-++++
T Consensus 167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~ 246 (342)
T PF06433_consen 167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYH 246 (342)
T ss_dssp TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEE
T ss_pred CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeec
Confidence 45443221 1222222 233455556666668889999999987654321 121100 01234557888
Q ss_pred CCCCEEEEEeCC---C-------eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC-EEEEEE-CCCeEEEEECCCCeEE
Q psy8748 1920 SSGRYIFCGSDD---N-------NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM-ALVTSS-WDQFVKVWQESNTIVW 1987 (2004)
Q Consensus 1920 PdG~~LaSGSsD---G-------sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~-~LaSgS-~DGtIrIWdlstg~l~ 1987 (2004)
+..+.|++-... | .|.+||+.+++.+..+.. ..++.+|+.+.+.+ +|++.+ .++.+.+||..+|+..
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 766666554322 1 488889999999998864 34577999988655 666554 5899999999999887
Q ss_pred EEEEeec
Q psy8748 1988 KVLKVYN 1994 (2004)
Q Consensus 1988 k~Ik~~~ 1994 (2004)
+.++...
T Consensus 326 ~~~~~lG 332 (342)
T PF06433_consen 326 RSIEQLG 332 (342)
T ss_dssp EEE---S
T ss_pred eehhccC
Confidence 7777554
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.015 Score=74.20 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=63.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1908 NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1908 ~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
.....+.+++++|+...++.|+.||.|.+||...+.... ..+.-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 345679999999999999999999999999987664332 234566899999999999999999999999998743
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00038 Score=89.11 Aligned_cols=262 Identities=11% Similarity=0.094 Sum_probs=147.1
Q ss_pred eeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceE
Q psy8748 1695 VNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1695 VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|+.++++..-|.+.+|..+..........
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 45699999988899998899999999877777767778999999999999999999999999999999874321111111
Q ss_pred EEEEecCccceeeeEEe--CC-------CcEEEeecCCeEE-EEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC
Q psy8748 1775 IRELLGYEGFLSSCRFI--DD-------TTLLTGSGDMKIV-TWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV 1844 (2004)
Q Consensus 1775 i~sl~gh~~~Vssvafs--dd-------~~LlSgS~DGtI~-IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~ 1844 (2004)
.... ....++-++|- .+ ...++.+++..+- .++.+........ .+ .-.|+|..|+.++.
T Consensus 142 ~~he--l~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~--~k-------sgv~~g~~F~~~~~ 210 (1416)
T KOG3617|consen 142 MQHE--LNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD--EK-------SGVPKGTEFLFAGK 210 (1416)
T ss_pred hhhH--hhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc--cc-------cCCCCCcEEEEEcC
Confidence 1110 12223333332 22 1233444443332 2222211100000 11 12467888999999
Q ss_pred CCeEEEEECCCCeEEEEEec----------CCCCeEEEEEeCCCCEEE------------------EEECCCeEEEEEcc
Q psy8748 1845 DKSCKLWDFREKKCVQTFFG----------HEADVNSVCFHPSGLAFA------------------TGSEDKTARLFDIR 1896 (2004)
Q Consensus 1845 DGsIrIWDlrs~k~I~tl~~----------h~s~ItsIafSPdg~~La------------------SgS~DGtIrIWDLr 1896 (2004)
+|+|+..|-. +++....+. ....|.++.-.-...++. .|+..|.|-+=.-.
T Consensus 211 ~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss 289 (1416)
T KOG3617|consen 211 SGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS 289 (1416)
T ss_pred CceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc
Confidence 9999988843 333222211 112222221110000000 01111111111100
Q ss_pred CCc--eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CC------CeeeEEEcc---CCCCeEEEEEcCCC
Q psy8748 1897 ADQ--QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL-LK------TTHNGVLSG---HENRVTSISLSPNG 1964 (2004)
Q Consensus 1897 tgk--~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL-~t------ge~l~tL~g---Hs~~VtsLaFSPDg 1964 (2004)
|- ...++ ....+..++|++++..+..++.|...|.+.+|-- .+ +.....+.+ -.+.|+.+.|.|-.
T Consensus 290 -GvLr~~eKy-g~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k 367 (1416)
T KOG3617|consen 290 -GVLRKSEKY-GLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIK 367 (1416)
T ss_pred -ccccCCcch-hhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecccc
Confidence 00 00111 1123457999999999999999999999999953 22 122333332 35679999998865
Q ss_pred CEEEEE
Q psy8748 1965 MALVTS 1970 (2004)
Q Consensus 1965 ~~LaSg 1970 (2004)
..++.-
T Consensus 368 ~~~avn 373 (1416)
T KOG3617|consen 368 STAAVN 373 (1416)
T ss_pred chhhhh
Confidence 544433
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.2e-05 Score=62.07 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=37.0
Q ss_pred CeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1942 TTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1942 ge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
|+++..+.+|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0023 Score=77.66 Aligned_cols=256 Identities=14% Similarity=0.189 Sum_probs=148.4
Q ss_pred EEEEECCCCceEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe--C
Q psy8748 1716 LIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI--D 1792 (2004)
Q Consensus 1716 IrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs--d 1792 (2004)
+++.+..+.+....+..+...|.+++|+|..+ .+..++.+..|++.|+++. .....+..+ ..+++++|. +
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~------~~vssy~a~-~~~wSC~wDlde 247 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS------CVVSSYIAY-NQIWSCCWDLDE 247 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc------eeeeheecc-CCceeeeeccCC
Confidence 55666556666666678888999999999877 7888999999999999864 333444444 778888887 3
Q ss_pred CCcEEEeecCCeEEEEECCCCceeEEeecc--ccCCeEEEEEC------CCCCEEEEEECCCeEEEEECCC--C--eEEE
Q psy8748 1793 DTTLLTGSGDMKIVTWNLETGQRIHEVAQA--HIGDVVSISLS------PDGQYFVTGSVDKSCKLWDFRE--K--KCVQ 1860 (2004)
Q Consensus 1793 d~~LlSgS~DGtI~IWDl~tg~~i~~il~~--h~~~ItsLafS------Pdg~~LaSGS~DGsIrIWDlrs--~--k~I~ 1860 (2004)
.+.+++|..+|.|.+||++..+.....+.+ ...+|..++.- +.|.+++....+ ...|...- + -++.
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vl 325 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVL 325 (463)
T ss_pred cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccc
Confidence 356889999999999999876543222111 22334443332 234444444432 45565432 1 1122
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEECCC-e------EE-EEEccCCceeEEEcCCCCCCC-----e-EEEEEcCCCCEEE
Q psy8748 1861 TFFGHEADVNSVCFHPSGLAFATGSEDK-T------AR-LFDIRADQQIATYLPPNKNSG-----F-TSCAVSSSGRYIF 1926 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg~~LaSgS~DG-t------Ir-IWDLrtgk~i~t~~~~~~~s~-----I-tsLafSPdG~~La 1926 (2004)
.+ +..+...++.+++..++++...... + |- --|..+|..+........+.. - ..+.-.++.++|+
T Consensus 326 el-e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv 404 (463)
T KOG1645|consen 326 EL-EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIV 404 (463)
T ss_pred cc-CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEE
Confidence 22 2244555666666445544433321 0 00 112223333222211110000 0 1122233455554
Q ss_pred -EEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCC
Q psy8748 1927 -CGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP--NGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1927 -SGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSP--Dg~~LaSgS~DGtIrIWdlst 1983 (2004)
+|+..+.+.+||..+++.+.++.- ..+|.+++... .+.+|+.-. |..++||+.+.
T Consensus 405 ~~gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 405 VVGDSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred EecCCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 455668899999999999998864 47888887654 344666666 55788887653
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.031 Score=71.10 Aligned_cols=267 Identities=13% Similarity=0.091 Sum_probs=140.2
Q ss_pred EEEeCCCCEEEEEeCC----------C-eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCC
Q psy8748 1698 VHYSGDSRHCVSGSLD----------G-KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1698 LaFSPDG~~LASGS~D----------G-tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
++.+|.|.-+|...++ . .|.||+ ..|+.+..+.-..+.|.++.|..+ ..|++...||.+++||+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence 4555666666655443 1 599998 477788777665589999999875 55566678999999998632
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccC---------CeEE-EEECCCC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIG---------DVVS-ISLSPDG 1836 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~---------~Its-LafSPdg 1836 (2004)
.............-....+....+..++ +++-+.++.+++.+-.......+....... .... ..++.+.
T Consensus 112 ~~fsl~~~i~~~~v~e~~i~~~~~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~ 190 (410)
T PF04841_consen 112 FQFSLGEEIEEEKVLECRIFAIWFYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR 190 (410)
T ss_pred eeechhhhccccCcccccccccccCCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc
Confidence 1000000111111111112222333334 344445565555533222211011000000 0000 2233344
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
...+....++.+.+.+-...+. + ...+++..|+.||+|++++.-..+|.+.+.+.+-.+....+... .......+
T Consensus 191 ~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~ 265 (410)
T PF04841_consen 191 VVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQM 265 (410)
T ss_pred ceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEE
Confidence 4445555555566444332211 1 23468999999999999999999999999987666666555433 22345667
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q psy8748 1917 AVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKV 1989 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~ 1989 (2004)
.|.-+.-.++.- ...+.++. ..... +.|.-++..++..-.|| |||..-+.-+.++.
T Consensus 266 ~WCG~dav~l~~--~~~l~lvg-----------~~~~~---~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~ 321 (410)
T PF04841_consen 266 AWCGNDAVVLSW--EDELLLVG-----------PDGDS---ISFWYDGPVILVSEIDG-VRIITSTSHEFLQR 321 (410)
T ss_pred EEECCCcEEEEe--CCEEEEEC-----------CCCCc---eEEeccCceEEeccCCc-eEEEeCCceEEEEE
Confidence 776443222221 22333332 12222 34444455555556677 88887766544433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.005 Score=77.66 Aligned_cols=277 Identities=14% Similarity=0.171 Sum_probs=148.0
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCC---CC
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS---TG 1770 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~---~~ 1770 (2004)
.|+.+.|+++..-|++|...|.|.||.+...+.-. ......-..+.+.+ ....++.-.+-|+..... ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~------~~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRR------FSLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccc------ccccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999999865433221 00001111111111 001112223344433211 11
Q ss_pred cceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEee-cc------ccCCeEEEEECC-----CC--
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVA-QA------HIGDVVSISLSP-----DG-- 1836 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il-~~------h~~~ItsLafSP-----dg-- 1836 (2004)
.+....-+....+.|++++.++=+.+++|..+|.+.+.|++....+.... .. ....++++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred ccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 23444455556899999999999999999999999999998877765531 11 234578888863 33
Q ss_pred -CEEEEEECCCeEEEEECC--C-CeE----EEEEecCCCCeEEEE-EeCC-----------------C---CEEEEEECC
Q psy8748 1837 -QYFVTGSVDKSCKLWDFR--E-KKC----VQTFFGHEADVNSVC-FHPS-----------------G---LAFATGSED 1887 (2004)
Q Consensus 1837 -~~LaSGS~DGsIrIWDlr--s-~k~----I~tl~~h~s~ItsIa-fSPd-----------------g---~~LaSgS~D 1887 (2004)
-++++|+..|.+.+|.+. . +.. ......+.++|..|. ++.+ | +-+++...+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 478999999999999764 1 211 112224566666665 3221 0 123444447
Q ss_pred CeEEEEEccCCceeEEEcCCCCCCCeEEEEE-----cCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCC----CCeEEE
Q psy8748 1888 KTARLFDIRADQQIATYLPPNKNSGFTSCAV-----SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHE----NRVTSI 1958 (2004)
Q Consensus 1888 GtIrIWDLrtgk~i~t~~~~~~~s~ItsLaf-----SPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs----~~VtsL 1958 (2004)
..++++...+.+...+.. ........+.+ ...+..|++-..+|.|++|.+...+.+....-+. ..+...
T Consensus 235 ~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp SEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred cceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 789999998888776664 21122333444 2357788888999999999999988887776432 234566
Q ss_pred EEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1959 SLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1959 aFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
.++++|..++-.|.. .+.+|.+
T Consensus 313 sis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 313 SISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred EECCCCCEEEEeCcc-cEEEEEE
Confidence 778888877666533 4444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0067 Score=78.07 Aligned_cols=143 Identities=14% Similarity=0.155 Sum_probs=98.4
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE-eeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQV-IPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~t-i~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~ 1769 (2004)
|...|.--+++..+++++.|+.-|.+++|+-..|..... ..+..+.+..++.+++..+++.|+..|.|.++-++.....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 445666667778899999999999999999665544332 2334556677788888999999999999999998874322
Q ss_pred CcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCc---eeEEeeccccCCeEEEEEC
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQ---RIHEVAQAHIGDVVSISLS 1833 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~---~i~~il~~h~~~ItsLafS 1833 (2004)
........-..|...|+++.|+.+. .+++|...|+|..-.+++.. ..........+.|..+.+.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 2111112222367899999999654 59999999999998887621 1111122345566666665
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0093 Score=72.05 Aligned_cols=187 Identities=16% Similarity=0.188 Sum_probs=131.4
Q ss_pred eEEEEECCCCceeEEeeccccCC-eEEEEECCCCCEEEEEEC-----CCeEEEEECC-CCeEEEEEecCCCCeEEEEEeC
Q psy8748 1804 KIVTWNLETGQRIHEVAQAHIGD-VVSISLSPDGQYFVTGSV-----DKSCKLWDFR-EKKCVQTFFGHEADVNSVCFHP 1876 (2004)
Q Consensus 1804 tI~IWDl~tg~~i~~il~~h~~~-ItsLafSPdg~~LaSGS~-----DGsIrIWDlr-s~k~I~tl~~h~s~ItsIafSP 1876 (2004)
...+||..+++....+......- --.-+|++||++|++.-. .|.|-|||.. ..+.+..+..+.-....+.+.|
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p 108 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP 108 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC
Confidence 35678888887765442111111 113579999999998643 4789999998 6677888888887788899999
Q ss_pred CCCEEEEEEC------------------CCeEEEEEccCCceeEEEcC--CCCCCCeEEEEEcCCCCEEEEEeCCCe---
Q psy8748 1877 SGLAFATGSE------------------DKTARLFDIRADQQIATYLP--PNKNSGFTSCAVSSSGRYIFCGSDDNN--- 1933 (2004)
Q Consensus 1877 dg~~LaSgS~------------------DGtIrIWDLrtgk~i~t~~~--~~~~s~ItsLafSPdG~~LaSGSsDGs--- 1933 (2004)
||+.|+++.. +..+...|..+|+.+.+... ..+...+..+++.++|..++..-..|.
T Consensus 109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~ 188 (305)
T PF07433_consen 109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD 188 (305)
T ss_pred CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence 9988777642 22466677888888877655 446678999999999988777655442
Q ss_pred ----EEEEECCCCeeeEEEc-------cCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1934 ----VHVWDLLKTTHNGVLS-------GHENRVTSISLSPNGMAL-VTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1934 ----IrIWDL~tge~l~tL~-------gHs~~VtsLaFSPDg~~L-aSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
|.+++. ++.+..+. .-.+.|-+|+++.++..+ +|+-.-|.+.+||..++........
T Consensus 189 ~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 189 APPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred cCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc
Confidence 344442 33233332 235779999999999877 4555678999999999976655443
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0025 Score=83.10 Aligned_cols=194 Identities=14% Similarity=0.200 Sum_probs=129.5
Q ss_pred EEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCC-eEEEEECCCCCEEEEEECCC-----eEEEEECCCC------
Q psy8748 1789 RFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD-VVSISLSPDGQYFVTGSVDK-----SCKLWDFREK------ 1856 (2004)
Q Consensus 1789 afsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~-ItsLafSPdg~~LaSGS~DG-----sIrIWDlrs~------ 1856 (2004)
..+.++.++.|+.+|.|.+++-. .....-+..+... |..+....+.++|++.+.|+ .++|||++..
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 33456779999999999888743 2221223444444 44444444446787777665 4899998632
Q ss_pred eEE--EEEec-----CCCCeEEEEEeCCCCEEEEEECCCeEEEEEcc--CCceeEEEcCCCCCCCeEEEEEcCCCCEEEE
Q psy8748 1857 KCV--QTFFG-----HEADVNSVCFHPSGLAFATGSEDKTARLFDIR--ADQQIATYLPPNKNSGFTSCAVSSSGRYIFC 1927 (2004)
Q Consensus 1857 k~I--~tl~~-----h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLr--tgk~i~t~~~~~~~s~ItsLafSPdG~~LaS 1927 (2004)
.++ ..+.+ ...++.+++.+.+-+.+++|-.+|.|..+.-+ ..+-.+.........+|+.+++..++..++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 233 12222 35678899999999999999999999998532 1111122223455688999999999987443
Q ss_pred EeCCCeEEEEECCCCee-eEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q psy8748 1928 GSDDNNVHVWDLLKTTH-NGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1928 GSsDGsIrIWDL~tge~-l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
......|.+|.+....+ ...+..|+..+.|.+|++....+++|+. ..+.+|+.++.+
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG 246 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence 34456799999874442 4457788889999999876665666653 458999888654
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.032 Score=72.84 Aligned_cols=270 Identities=14% Similarity=0.098 Sum_probs=153.1
Q ss_pred CCCCEEEEEeC-CCeEEEEECCCCceEEEeeC-CCCceEEEEEe--cCCCEEEEeec-------CCeEEEEEcCCCCCCC
Q psy8748 1702 GDSRHCVSGSL-DGKLIIWDTWTGNKTQVIPL-RSAWVMSVAFA--QSGNFVACGGM-------DNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1702 PDG~~LASGS~-DGtIrVWDl~Tgk~l~ti~~-Ht~~ItsLafS--Pdg~~LaSGS~-------DGtIrVWDl~t~~~~~ 1770 (2004)
.||+|++.-.. +..|-..++...++-+.+.. ....+.++.|- |+..++++++. ||.. +++...
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~-l~~~~e----- 212 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKD-LDDPKK----- 212 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCE-eecccc-----
Confidence 47888887664 56677777766655444432 22345555554 56666666653 4431 222211
Q ss_pred cceEEEEEecCcc-ceeeeEEeCCCcEEEeecCCeEEEEE---CCCCceeEEeeccccCCeEEEEEC--------CCCCE
Q psy8748 1771 AAKVIRELLGYEG-FLSSCRFIDDTTLLTGSGDMKIVTWN---LETGQRIHEVAQAHIGDVVSISLS--------PDGQY 1838 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~-~Vssvafsdd~~LlSgS~DGtI~IWD---l~tg~~i~~il~~h~~~ItsLafS--------Pdg~~ 1838 (2004)
....+..+..... .+..+.....-..+..+.||...... .+.+..+..+...... ..+.|+ ++|++
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~vvfni~~iea~vkdGK~ 290 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WVVVFNIARIEEAVKAGKF 290 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc--eEEEEchHHHHHhhhCCCE
Confidence 1111111211111 11222222333455666676655444 3455544333222222 334443 46776
Q ss_pred EEEEECCCeEEEEECCC----C-eEEEEEecCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEEccCCce------------
Q psy8748 1839 FVTGSVDKSCKLWDFRE----K-KCVQTFFGHEADVNSVCFHPSGLAFATGSE-DKTARLFDIRADQQ------------ 1900 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlrs----~-k~I~tl~~h~s~ItsIafSPdg~~LaSgS~-DGtIrIWDLrtgk~------------ 1900 (2004)
...+ ++.|.++|.++ + ..+..+ .-......+.++|||+++++++. +++|.|+|+.+.+.
T Consensus 291 ~~V~--gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v 367 (635)
T PRK02888 291 KTIG--GSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV 367 (635)
T ss_pred EEEC--CCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence 6653 67899999988 3 334444 45667789999999999777664 88999999987553
Q ss_pred eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CeeeEEEccCCCCeEE-----EEEcCCCC
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK----------TTHNGVLSGHENRVTS-----ISLSPNGM 1965 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t----------ge~l~tL~gHs~~Vts-----LaFSPDg~ 1965 (2004)
.... .....-...+|+++|+...+-.-|..|..||+.+ ...+..+.-|-.+-.- =.-.+||+
T Consensus 368 vaev---evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk 444 (635)
T PRK02888 368 VAEP---ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGK 444 (635)
T ss_pred EEee---ccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCC
Confidence 2222 1123345678999999888888899999999865 3344444434332211 12357899
Q ss_pred EEEEEE---CCCe----------EEEEECCCCe
Q psy8748 1966 ALVTSS---WDQF----------VKVWQESNTI 1985 (2004)
Q Consensus 1966 ~LaSgS---~DGt----------IrIWdlstg~ 1985 (2004)
+|++.. .|+. -++.|+++.+
T Consensus 445 ~l~~~nk~skdrfl~vgpl~pen~qlidIsgdk 477 (635)
T PRK02888 445 WLVSLNKFSKDRFLPVGPLHPENDQLIDISGDK 477 (635)
T ss_pred EEEEccccccccccCCCCCCCCcceeEEccCCe
Confidence 988874 3432 3566776553
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.15 Score=64.38 Aligned_cols=268 Identities=17% Similarity=0.187 Sum_probs=171.9
Q ss_pred EEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC-CeEEEEEcCCCCCCCcceEEEEEecCc-cceeeeEEe-C
Q psy8748 1716 LIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD-NMCTVYDLNNRDSTGAAKVIRELLGYE-GFLSSCRFI-D 1792 (2004)
Q Consensus 1716 IrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D-GtIrVWDl~t~~~~~~~k~i~sl~gh~-~~Vssvafs-d 1792 (2004)
+.+++..+......+..+. ....+...+++..+...... ..+...+... .......... .....+... .
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-------n~~~~~~~~g~~~p~~i~v~~~ 84 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-------NTVTQSLSVGGVYPAGVAVNPA 84 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-------ceeeeeccCCCccccceeeCCC
Confidence 6666655555555555443 45667788888544443322 2343333321 1111111111 222333443 3
Q ss_pred CCc-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC---CCeEEEEECCCCeEEEEEecCCCC
Q psy8748 1793 DTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV---DKSCKLWDFREKKCVQTFFGHEAD 1868 (2004)
Q Consensus 1793 d~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~---DGsIrIWDlrs~k~I~tl~~h~s~ 1868 (2004)
+.. ++....++.|.+.|..+.........+. ....++++++++.++++.. ++.+.+.|..+.+.......-..+
T Consensus 85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P 162 (381)
T COG3391 85 GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP 162 (381)
T ss_pred CCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc
Confidence 333 4445556899999988877776664444 5678999999988888766 688999999988888775444444
Q ss_pred eEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeE-EEc-CCCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q psy8748 1869 VNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIA-TYL-PPNKNSGFTSCAVSSSGRYIFCGSDD---NNVHVWDLLKT 1942 (2004)
Q Consensus 1869 ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~-t~~-~~~~~s~ItsLafSPdG~~LaSGSsD---GsIrIWDL~tg 1942 (2004)
..+++.|+|+.+++.. .++.|.+.|........ .-. .......-..+.++++|.++.+.... +.+...|..++
T Consensus 163 -~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 163 -TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred -ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 8999999999766655 68899999977655442 100 01122334678999999977766554 58999999888
Q ss_pred eeeEEEccCCC-CeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEEeec
Q psy8748 1943 THNGVLSGHEN-RVTSISLSPNGMALVTSSW-DQFVKVWQESNTIVWKVLKVYN 1994 (2004)
Q Consensus 1943 e~l~tL~gHs~-~VtsLaFSPDg~~LaSgS~-DGtIrIWdlstg~l~k~Ik~~~ 1994 (2004)
........-.. ....+.++|+|..+.+... .+.+.+-|..+...........
T Consensus 242 ~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 242 NVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred eEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccc
Confidence 87765221122 5677899999999988844 4889999988876555544433
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0081 Score=78.12 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=91.2
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE---------------------------------------
Q psy8748 1845 DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS--------------------------------------- 1885 (2004)
Q Consensus 1845 DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS--------------------------------------- 1885 (2004)
.+.+.++|..+.+....+.-. .....++++++|+++++.+
T Consensus 214 ~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred eEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence 345777787776665555332 2445677788888777665
Q ss_pred -CCCeEEEEEccC----C-ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCee------------eE
Q psy8748 1886 -EDKTARLFDIRA----D-QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTTH------------NG 1946 (2004)
Q Consensus 1886 -~DGtIrIWDLrt----g-k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge~------------l~ 1946 (2004)
.+++|.++|.++ + +....+. .......+.++|||+++++++. +++|.|+|+.+.+. ..
T Consensus 293 V~gn~V~VID~~t~~~~~~~v~~yIP---VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 293 IGGSKVPVVDGRKAANAGSALTRYVP---VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred ECCCEEEEEECCccccCCcceEEEEE---CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 124577777776 2 2333332 2234577899999999887665 88999999987553 23
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1947 VLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1947 tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
...- ...-...+|.++|....|.--|..|..|++..
T Consensus 370 evev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 370 EPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3322 23345678999999888889999999999886
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.023 Score=72.69 Aligned_cols=222 Identities=12% Similarity=0.098 Sum_probs=118.2
Q ss_pred CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECC
Q psy8748 1732 LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLE 1811 (2004)
Q Consensus 1732 ~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~ 1811 (2004)
........+.++|+|++++++ .||.-.++..... .... .+......|...+.+++-...+.|.++.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~------r~k~-----~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW------RNKA-----FGSGLSFVWSSRNRYAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT------EEEE-----EEE-SEEEE-TSSEEEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC------cccc-----cCceeEEEEecCccEEEEECCCeEEEEEcC
Confidence 344557899999999999985 4677777774321 1111 233445677777888888888999996332
Q ss_pred CCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEE
Q psy8748 1812 TGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTAR 1891 (2004)
Q Consensus 1812 tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIr 1891 (2004)
+......+. ....+..+-. |..|...+. +.|.+||+.+++.++.+... +|..+.|+++|++++..+.+ .+.
T Consensus 98 ~~~~~k~i~--~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 98 KNEVVKSIK--LPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIY 168 (443)
T ss_dssp EE-TT-------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEE
T ss_pred ccccceEEc--CCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEE
Confidence 222211221 1123444433 777777764 48999999999999988643 48999999999999998755 688
Q ss_pred EEEccCC-----------ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEE
Q psy8748 1892 LFDIRAD-----------QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1892 IWDLrtg-----------k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF 1960 (2004)
+++.+.. ...... ......|.+.+|..+ .++-.+.. .++. +..|+. ..+..-..++.=+.+
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~--~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy 240 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELI--HEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLGY 240 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEE--EEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEEE
T ss_pred EEEecchhcccccccCchhceEEE--EEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEEE
Confidence 8775533 011111 011245777778755 44433333 6665 333332 222222445666677
Q ss_pred cCCCCEEEEEECCCeEEEEECC
Q psy8748 1961 SPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1961 SPDg~~LaSgS~DGtIrIWdls 1982 (2004)
.+..+.++....|+.|..+.++
T Consensus 241 ~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 241 LPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ETTTTEEEEE-TT--EEEEE--
T ss_pred EccCCEEEEEECCCCEEEEEEC
Confidence 7777788888888888888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.078 Score=65.02 Aligned_cols=243 Identities=17% Similarity=0.198 Sum_probs=145.1
Q ss_pred EEEEeCCCCEEEEEeC----------CCeEEEEECCCCceEEEeeCCCC-------ceEEEEEecCCCEEEEeec--CCe
Q psy8748 1697 SVHYSGDSRHCVSGSL----------DGKLIIWDTWTGNKTQVIPLRSA-------WVMSVAFAQSGNFVACGGM--DNM 1757 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~----------DGtIrVWDl~Tgk~l~ti~~Ht~-------~ItsLafSPdg~~LaSGS~--DGt 1757 (2004)
.+..+||++.+++++. .-.|.+||..+-.....+..... ......++.|++++++... --.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 4678899998886532 34699999999988776543322 1233567777877766543 246
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECC-CCceeEEe---eccccCCeE-EEEE
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLE-TGQRIHEV---AQAHIGDVV-SISL 1832 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~-tg~~i~~i---l~~h~~~It-sLaf 1832 (2004)
|.|.|+..+ +....+.- .++. .+.-..+..|.+-|.||.+....+. .|+...+. +.....++. .-++
T Consensus 120 VtVVDl~~~------kvv~ei~~-PGC~-~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~ 191 (342)
T PF06433_consen 120 VTVVDLAAK------KVVGEIDT-PGCW-LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY 191 (342)
T ss_dssp EEEEETTTT------EEEEEEEG-TSEE-EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE
T ss_pred EEEEECCCC------ceeeeecC-CCEE-EEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce
Confidence 777777643 33332221 1221 1222244568899999999999887 44443221 222222222 2334
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeE--EEEEecC----------CCCeEEEEEeCCCCEEEEEEC---CC-------eE
Q psy8748 1833 SPDGQYFVTGSVDKSCKLWDFREKKC--VQTFFGH----------EADVNSVCFHPSGLAFATGSE---DK-------TA 1890 (2004)
Q Consensus 1833 SPdg~~LaSGS~DGsIrIWDlrs~k~--I~tl~~h----------~s~ItsIafSPdg~~LaSgS~---DG-------tI 1890 (2004)
...+..++..+.+|.|+-.|+..... ...+..- .+.-.-+++++..+.|++.-. +| .|
T Consensus 192 ~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteV 271 (342)
T PF06433_consen 192 SRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEV 271 (342)
T ss_dssp ETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEE
T ss_pred ECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEE
Confidence 44555666678899999999876542 2222110 122345778876666555332 22 48
Q ss_pred EEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCeeeEEEcc
Q psy8748 1891 RLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR-YIFCGS-DDNNVHVWDLLKTTHNGVLSG 1950 (2004)
Q Consensus 1891 rIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~-~LaSGS-sDGsIrIWDL~tge~l~tL~g 1950 (2004)
.+||+.+++.+.++... ..+.++.++.+.+ +|++.+ .+|.+.+||..+|+.+..+..
T Consensus 272 Wv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 272 WVYDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 88999999999988543 3466889998765 565544 579999999999999988864
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.14 Score=63.98 Aligned_cols=274 Identities=16% Similarity=0.180 Sum_probs=131.5
Q ss_pred EEEEeCCCCEEEEEeC-C--CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcce
Q psy8748 1697 SVHYSGDSRHCVSGSL-D--GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~-D--GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k 1773 (2004)
.=+|.+||+.|+-++. | ..+.+.|+.+++..+...+.........++++++.++-......++..|+++.+ ..
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e----~~ 115 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE----ER 115 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT------EE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc----EE
Confidence 3467789987665554 4 457777999998887666543434456778888887766556678888887753 22
Q ss_pred EEEEEecCccceeeeEEe--CCCcEEEee-----------------------cCCeEEEEECCCCceeEEeeccccCCeE
Q psy8748 1774 VIRELLGYEGFLSSCRFI--DDTTLLTGS-----------------------GDMKIVTWNLETGQRIHEVAQAHIGDVV 1828 (2004)
Q Consensus 1774 ~i~sl~gh~~~Vssvafs--dd~~LlSgS-----------------------~DGtI~IWDl~tg~~i~~il~~h~~~It 1828 (2004)
.+... .........|. .+...+++. -...|...|+.+|+..... .....+.
T Consensus 116 ~vy~~--p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~--~~~~wlg 191 (386)
T PF14583_consen 116 VVYEV--PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF--EDTDWLG 191 (386)
T ss_dssp EEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE--EESS-EE
T ss_pred EEEEC--CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE--ecCcccc
Confidence 22222 22333223332 223333222 1235667788887754222 3455677
Q ss_pred EEEECCCCCEEEEEECCC-----eEEEEECC-CCeEEEEEecCC--CCeEEEEEeCCCCEEEEEEC-----CCeEEEEEc
Q psy8748 1829 SISLSPDGQYFVTGSVDK-----SCKLWDFR-EKKCVQTFFGHE--ADVNSVCFHPSGLAFATGSE-----DKTARLFDI 1895 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS~DG-----sIrIWDlr-s~k~I~tl~~h~--s~ItsIafSPdg~~LaSgS~-----DGtIrIWDL 1895 (2004)
.+.|+|....++.-+..| .-+||-++ .+...+.+..+. ..+..=-|.|||..+..-+. +..|.-+|.
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 889999665555544433 12555443 233334443332 23444568899987665332 335777788
Q ss_pred cCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCC----------------eEEEEECCCCeeeEEEc---------c
Q psy8748 1896 RADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN----------------NVHVWDLLKTTHNGVLS---------G 1950 (2004)
Q Consensus 1896 rtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDG----------------sIrIWDL~tge~l~tL~---------g 1950 (2004)
.+++....... ........++||++++-=+.|. -|+++++..+....... +
T Consensus 272 ~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~ 347 (386)
T PF14583_consen 272 DTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDG 347 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTT
T ss_pred CCCCceEEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecC
Confidence 87765433221 2345667788998876433332 46678887766532221 1
Q ss_pred CCC-CeEEEEEcCCCCEEE-EEECCCeEEEEECC
Q psy8748 1951 HEN-RVTSISLSPNGMALV-TSSWDQFVKVWQES 1982 (2004)
Q Consensus 1951 Hs~-~VtsLaFSPDg~~La-SgS~DGtIrIWdls 1982 (2004)
|.. .=-...|+|||++++ ++...|...||-++
T Consensus 348 ~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 348 DRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp BSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 111 124679999999865 45567877777543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.081 Score=65.93 Aligned_cols=262 Identities=18% Similarity=0.194 Sum_probs=140.7
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee-CC----------------CCceEEEEEecCCCEEEEeec
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP-LR----------------SAWVMSVAFAQSGNFVACGGM 1754 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~-~H----------------t~~ItsLafSPdg~~LaSGS~ 1754 (2004)
...+....|||+|+++|-.. ++.|.+++..++...+... +. -+.-.++.|+||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999999885 5789999987774443221 20 112356789999999887654
Q ss_pred C-CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC--CeEEEEECCCCceeE-Eee---ccccCCe
Q psy8748 1755 D-NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD--MKIVTWNLETGQRIH-EVA---QAHIGDV 1827 (2004)
Q Consensus 1755 D-GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D--GtI~IWDl~tg~~i~-~il---~~h~~~I 1827 (2004)
| ..|+.+.+........ ....+..+.+.. +|..+ -.+.++|+.+++... ... ......+
T Consensus 121 d~~~v~~~~~~~~~~~~~---------~yp~~~~~~YPk-----~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl 186 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDS---------QYPEVESIRYPK-----AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYL 186 (353)
T ss_dssp E-TTS-EEEEEEESSSTE---------SS-EEEEEE--B-----TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEE
T ss_pred CCcCCceEEeeccCCccc---------cCCcccccccCC-----CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCc
Confidence 4 3444443321110000 001222222221 11111 246678888877532 111 2345568
Q ss_pred EEEEECCCCCEEEEEE--CCC---eEEEEECCCCeEEEEEe-cCCCCe---EEEEEe-CCCC-EEEEEECCCeEEEE--E
Q psy8748 1828 VSISLSPDGQYFVTGS--VDK---SCKLWDFREKKCVQTFF-GHEADV---NSVCFH-PSGL-AFATGSEDKTARLF--D 1894 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS--~DG---sIrIWDlrs~k~I~tl~-~h~s~I---tsIafS-Pdg~-~LaSgS~DGtIrIW--D 1894 (2004)
..+.|.++++.+++.- .+. .+.++|..++....... .....| ....|. +++. ++.....||.-++| +
T Consensus 187 ~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~ 266 (353)
T PF00930_consen 187 TRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYD 266 (353)
T ss_dssp EEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEE
T ss_pred ccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEc
Confidence 8999999988444433 222 47777887665433222 222222 355555 5554 45555577765554 5
Q ss_pred ccCCceeEEEcCCCCCCCeE-EEEEcCCCCEEE-EEeCC----CeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEE
Q psy8748 1895 IRADQQIATYLPPNKNSGFT-SCAVSSSGRYIF-CGSDD----NNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALV 1968 (2004)
Q Consensus 1895 Lrtgk~i~t~~~~~~~s~It-sLafSPdG~~La-SGSsD----GsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~La 1968 (2004)
...+. .. ....+ .-.|. .+.++++++.|+ ++..+ ..++..++..+.....+....+.-..+.|+|+|++++
T Consensus 267 ~~~~~-~~-~lT~G-~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 267 LDGGK-PR-QLTSG-DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp TTSSE-EE-ESS-S-SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred ccccc-ee-ccccC-ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEE
Confidence 44443 22 32223 34453 478888877655 55442 2566667662334455543333337999999999876
Q ss_pred EEE
Q psy8748 1969 TSS 1971 (2004)
Q Consensus 1969 SgS 1971 (2004)
-..
T Consensus 344 ~~~ 346 (353)
T PF00930_consen 344 DTY 346 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.071 Score=65.40 Aligned_cols=219 Identities=14% Similarity=0.158 Sum_probs=130.0
Q ss_pred CeEEEEECCCCceEEEeeCC-CCceEEEEEec---C----CCEEEEeec---------C-CeEEEEEcCCC-CCCCcceE
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLR-SAWVMSVAFAQ---S----GNFVACGGM---------D-NMCTVYDLNNR-DSTGAAKV 1774 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~H-t~~ItsLafSP---d----g~~LaSGS~---------D-GtIrVWDl~t~-~~~~~~k~ 1774 (2004)
+.|++.|..+.+.+..+... ...+.+++... + ..++++|+. . |.|.++++... ......+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36888998888877766532 33455554432 2 467777753 2 99999999863 11112232
Q ss_pred EEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCc-eeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1775 IRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQ-RIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1775 i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~-~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
+.. ....+.|.++....+. + +++.++.|.+|++...+ ............++++... ++++++|+....+.++..
T Consensus 82 i~~-~~~~g~V~ai~~~~~~-l-v~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHS-TEVKGPVTAICSFNGR-L-VVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEE-EEESS-EEEEEEETTE-E-EEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEE-EeecCcceEhhhhCCE-E-EEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 222 2346778888877544 3 34445899999998888 4444333344467777765 669999998888887754
Q ss_pred CC-CeEEEEE--ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC-------Cc-eeEEEcCCCCCCCeEEE---EEc
Q psy8748 1854 RE-KKCVQTF--FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA-------DQ-QIATYLPPNKNSGFTSC---AVS 1919 (2004)
Q Consensus 1854 rs-~k~I~tl--~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt-------gk-~i~t~~~~~~~s~ItsL---afS 1919 (2004)
+. ...+..+ ......++++.|-++++.++++..+|.+.++.... +. .+.....-.....|+++ ++.
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 43 2222222 22345688889987767999999999999998762 22 22221111223456666 444
Q ss_pred C--CC------CEEEEEeCCCeEEEE
Q psy8748 1920 S--SG------RYIFCGSDDNNVHVW 1937 (2004)
Q Consensus 1920 P--dG------~~LaSGSsDGsIrIW 1937 (2004)
| .+ ..++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 4 22 247888899988843
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0026 Score=83.13 Aligned_cols=181 Identities=16% Similarity=0.196 Sum_probs=134.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCc
Q psy8748 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYE 1782 (2004)
Q Consensus 1703 DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~ 1782 (2004)
++..++.||-...+..+|+.+++..+......+.|.-|+. +++++++|...|+|.+-|.++ .+.+.++..|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s------~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS------FETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc------Cceeeeeeccc
Confidence 3456777777778889999888888777666655666654 489999999999999999874 57788899999
Q ss_pred cceeeeEEeCCCcEEEeec---------CCeEEEEECCCCceeEEeeccccCCeEEEEECCC-CCEEEEEECCCeEEEEE
Q psy8748 1783 GFLSSCRFIDDTTLLTGSG---------DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD-GQYFVTGSVDKSCKLWD 1852 (2004)
Q Consensus 1783 ~~Vssvafsdd~~LlSgS~---------DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd-g~~LaSGS~DGsIrIWD 1852 (2004)
+.+..+... ++.++++|. |.-|++||++..+.+..+ .......-+.|+|. ...+++++..|...+.|
T Consensus 218 ~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI--~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 218 GSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI--QFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred cceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCc--ccccCchhhhhcccccceEEEEecccceeecc
Confidence 998877654 456666654 456899999887765333 11122245677774 34678888899999999
Q ss_pred ---CCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q psy8748 1853 ---FREK-KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1853 ---lrs~-k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWD 1894 (2004)
+.+. ..+..+......+..++++++|+.++.|..+|.|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3333 22344444556699999999999999999999999997
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.097 Score=62.40 Aligned_cols=234 Identities=15% Similarity=0.110 Sum_probs=132.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEE------
Q psy8748 1702 GDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI------ 1775 (2004)
Q Consensus 1702 PDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i------ 1775 (2004)
..++.|+.|+.+| +.+++.........+. +...|..+...++-+.+++-+ ||.+.+++++...........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 4578899999988 9999983333322222 223399999999888777665 499999999765432211100
Q ss_pred --EEEecCccceeeeE---EeCCCcEEEeecCCeEEEEECCCC-----ceeEEeeccccCCeEEEEECCCCCEEEEEECC
Q psy8748 1776 --RELLGYEGFLSSCR---FIDDTTLLTGSGDMKIVTWNLETG-----QRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1776 --~sl~gh~~~Vssva---fsdd~~LlSgS~DGtI~IWDl~tg-----~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
.........+...+ ...+...++......|.+|..... ....++ .....+.+++|. ++.+++|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI--SLPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE--EcCCCcEEEEEe--CCEEEEEeCC
Confidence 00111122233333 123334555555568888877653 233333 345778999998 6678888755
Q ss_pred CeEEEEECCCCeEEEEEecCC------------CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCe
Q psy8748 1846 KSCKLWDFREKKCVQTFFGHE------------ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGF 1913 (2004)
Q Consensus 1846 GsIrIWDlrs~k~I~tl~~h~------------s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~I 1913 (2004)
...+.|+.++.....+.... .++..+.. +++.++++. |..-.+.|. .|+...... -......
T Consensus 158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~-i~W~~~p 231 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST-IQWSSAP 231 (275)
T ss_pred -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE-EEcCCch
Confidence 48888998766543332111 12333333 345555543 333334443 343332110 0111234
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC
Q psy8748 1914 TSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951 (2004)
Q Consensus 1914 tsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH 1951 (2004)
..+++. ..|+++.+. +.|.||++.+++.++.+...
T Consensus 232 ~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 232 QSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred hEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 455553 457777655 55999999999998888743
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.03 Score=71.73 Aligned_cols=226 Identities=15% Similarity=0.134 Sum_probs=119.3
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE-c
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD-L 1763 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD-l 1763 (2004)
.+.+.........+.++|+|++++.++ ||...|+.....+.... +.-...+|.++ +.+++-...+.|.++. +
T Consensus 25 ~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNF 97 (443)
T ss_dssp -EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETT
T ss_pred eccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcC
Confidence 444555556688999999999998855 68888887433333322 23456789884 4566666688899963 3
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
+... .+ .+.. ...+..+.. +.++....++.|.+||+.+++.+.++. -.+|..+.|+++|.+++..+
T Consensus 98 ~~~~----~k---~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~---v~~vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 98 KNEV----VK---SIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRID---VSAVKYVIWSDDGELVALVT 163 (443)
T ss_dssp EE-T----T---------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEES---S-E-EEEEE-TTSSEEEEE-
T ss_pred cccc----ce---EEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEe---cCCCcEEEEECCCCEEEEEe
Confidence 2111 00 1110 111222222 444444455589999999999887762 22389999999999999988
Q ss_pred CCCeEEEEECCCC-----------eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1844 VDKSCKLWDFREK-----------KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~-----------k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
.+ .+.|++.+.. .....+......|.+.+|..+ .|+..+.. +++- +..|........ ..+
T Consensus 164 ~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~l---d~~ 234 (443)
T PF04053_consen 164 KD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHL---DKP 234 (443)
T ss_dssp S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE----SS-
T ss_pred CC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEc---CCc
Confidence 55 6788775433 023333333567889999876 44444444 6666 333433222211 234
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
+.-+.+.++.+.++..+.|+.|..+.+.
T Consensus 235 ~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 235 LYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp -EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred eEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 5667777777788888888888877663
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.059 Score=66.08 Aligned_cols=172 Identities=16% Similarity=0.167 Sum_probs=105.2
Q ss_pred CeEEEEECCCC-----ceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCe-EEEEEe-cCCCCeEEEEEe
Q psy8748 1803 MKIVTWNLETG-----QRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKK-CVQTFF-GHEADVNSVCFH 1875 (2004)
Q Consensus 1803 GtI~IWDl~tg-----~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k-~I~tl~-~h~s~ItsIafS 1875 (2004)
|.|.++++... +..........++|++++-- ++ +++++. ++.|.+|++...+ ....-. .....+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 89999999884 22222234567889998876 33 455544 5799999998777 433322 223356666555
Q ss_pred CCCCEEEEEECCCeEEEEEccC-CceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-------C--eee
Q psy8748 1876 PSGLAFATGSEDKTARLFDIRA-DQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK-------T--THN 1945 (2004)
Q Consensus 1876 Pdg~~LaSgS~DGtIrIWDLrt-gk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t-------g--e~l 1945 (2004)
++++++|.....+.++..+. +..+...........++++.+-++++.+++++.+|.+.++.... + ...
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~ 216 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLE 216 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEE
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccce
Confidence 55999999888888886554 33233333333456688888886768999999999999998752 2 122
Q ss_pred EEEcc-CCCCeEEE---EEcC--CC------CEEEEEECCCeEEEE
Q psy8748 1946 GVLSG-HENRVTSI---SLSP--NG------MALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1946 ~tL~g-Hs~~VtsL---aFSP--Dg------~~LaSgS~DGtIrIW 1979 (2004)
....- ....|+++ .+.| .+ ..++.++.+|.|.+.
T Consensus 217 ~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 217 RISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 22222 34567777 4444 12 247888889988743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.16 Score=60.57 Aligned_cols=228 Identities=15% Similarity=0.204 Sum_probs=129.3
Q ss_pred cCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEe----
Q psy8748 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV---- 1819 (2004)
Q Consensus 1744 Pdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~i---- 1819 (2004)
..++.|+.|+.+| +.+++..... ...... ....|..+...+.-.++..-.|+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-----~~~~i~--~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-----KPTRIL--KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-----cceeEe--ecceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccc
Confidence 4588999999888 8999883211 111111 112277777776555444445699999998754433210
Q ss_pred ---------eccccCCeEEEE--ECCCCCEEEEEECCCeEEEEECCCC-----eEEEEEecCCCCeEEEEEeCCCCEEEE
Q psy8748 1820 ---------AQAHIGDVVSIS--LSPDGQYFVTGSVDKSCKLWDFREK-----KCVQTFFGHEADVNSVCFHPSGLAFAT 1883 (2004)
Q Consensus 1820 ---------l~~h~~~ItsLa--fSPdg~~LaSGS~DGsIrIWDlrs~-----k~I~tl~~h~s~ItsIafSPdg~~LaS 1883 (2004)
.......+...+ -...+...++......|.+|..... +..+.+ .....+.+++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEE
Confidence 112223344444 1223334444444568888877653 344444 345788999998 557888
Q ss_pred EECCCeEEEEEccCCceeEEEcCCCCC----------CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE--EEccC
Q psy8748 1884 GSEDKTARLFDIRADQQIATYLPPNKN----------SGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNG--VLSGH 1951 (2004)
Q Consensus 1884 gS~DGtIrIWDLrtgk~i~t~~~~~~~----------s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~--tL~gH 1951 (2004)
|..+ ...+.|+.++.....+...... .++..+... ++.+|++. |..-.+.|. .|+..+ .+. -
T Consensus 154 ~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~-W 227 (275)
T PF00780_consen 154 GTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ-W 227 (275)
T ss_pred EeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE-c
Confidence 8754 4889999877665444222211 223333333 45666653 333333343 444333 221 2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1952 ENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1952 s~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
...+.++++ ...+|+..+.+ .|.||++.+++..+.+.
T Consensus 228 ~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 228 SSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred CCchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 335566666 44578877765 59999999997655554
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.11 Score=60.60 Aligned_cols=190 Identities=11% Similarity=0.063 Sum_probs=115.3
Q ss_pred CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccC
Q psy8748 1746 GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIG 1825 (2004)
Q Consensus 1746 g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~ 1825 (2004)
..+++.|+..|.+...|..++....+ .+ -...+.+-+..-++.++.|+..|.+++.+.++|.....+.....-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We-----~i--lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWE-----AI--LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEee-----hh--hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 45677788888888877776542221 11 122333333345667999999999999999999776555322222
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEc
Q psy8748 1826 DVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~ 1905 (2004)
.+ .....+++..++.|+.|++.+..|.++..++...+...+...+-+..|-...++.+...|.+.--..+.+.. ..+.
T Consensus 96 k~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~-~~~w 173 (354)
T KOG4649|consen 96 KV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSS-TEFW 173 (354)
T ss_pred cc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCc-ceeh
Confidence 22 234567899999999999999999999998888765555444555666333455555666665555444321 1111
Q ss_pred CCCCCCCeEE--EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE
Q psy8748 1906 PPNKNSGFTS--CAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1906 ~~~~~s~Its--LafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL 1948 (2004)
......++.. ++ -+..+..+.-||.+.-+| ..|+.+...
T Consensus 174 ~~~~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~ 214 (354)
T KOG4649|consen 174 AATRFGPIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRP 214 (354)
T ss_pred hhhcCCccccCcee---ccceEEEEEeccEEEEEc-CCCcEEEee
Confidence 1111122211 11 144566666777777776 556655544
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.41 Score=58.61 Aligned_cols=274 Identities=12% Similarity=0.092 Sum_probs=130.4
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc-eEEEe--eCC---CCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN-KTQVI--PLR---SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk-~l~ti--~~H---t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
...+.+|+|..+..-+++| ..|.| +...+|- .-... ... .....++.|.. ...+++ +..| +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~iv-G~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIV-GEPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTSS-EE-----S-----EEEEEEEET-TEEEEE-EETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE--EEECCCCccccccccCCCccceeeEEEEEecC-CceEEE-cCCc-eEEEecCC
Confidence 3588999998555555555 45654 3333432 21111 111 22466777764 334444 4455 33333333
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
+. ....+.......+....+...++.....++..|.|+.= .+.|+.-..+.....+.+..+..+++|++++++...
T Consensus 90 G~---tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 90 GK---TWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TS---S-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CC---CcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 32 22222211112223333444444555555566665442 234444444445566788999999999999888766
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEc-cCCceeEE--EcCCCCCCCeEEEEEcCCC
Q psy8748 1846 KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDI-RADQQIAT--YLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1846 GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDL-rtgk~i~t--~~~~~~~s~ItsLafSPdG 1922 (2004)
....-||--...-...-......|..+.|.|++...+.+ ..|.|+.=+. .....-.. .........+..++|.+++
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 666788865432333333456889999999998776655 8898888872 22222111 1111233458899999988
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLS---GHENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge~l~tL~---gHs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
...++|+ .|.+ +.....|+.=.... .-...+..|.|.++.+-+ ..|.||.|--|
T Consensus 245 ~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~lG~~G~ll~~ 301 (302)
T PF14870_consen 245 EIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VLGQDGVLLRY 301 (302)
T ss_dssp -EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE-STTEEEEE
T ss_pred CEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE-EECCCcEEEEe
Confidence 8777665 4433 33444454433332 234568889997665444 45568877655
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.016 Score=77.92 Aligned_cols=136 Identities=17% Similarity=0.165 Sum_probs=99.6
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCc-eEEEEEec-----CCCEEEEeecCCeEEEEEcCCCCCCCcceEE---EEEecCc
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAW-VMSVAFAQ-----SGNFVACGGMDNMCTVYDLNNRDSTGAAKVI---RELLGYE 1782 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~-ItsLafSP-----dg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i---~sl~gh~ 1782 (2004)
....|+-.|+..|+.+..++.|... |..++-.. +....+.|-.+..+..||.+-.. .+.+ .......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~----~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG----NKLVDSQSKQYSSK 577 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC----CceeeccccccccC
Confidence 4577899999999999999887754 55554321 13345667777889999987532 1111 1122345
Q ss_pred cceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1783 GFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1783 ~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
...+|++-..++++++|+.+|.|++||- .|....+.+.+.+.+|.++..+.||+++++.+ +..+.+++.
T Consensus 578 ~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 578 NNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 5677888889999999999999999994 44555556667789999999999999988776 567777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.18 Score=60.05 Aligned_cols=206 Identities=13% Similarity=0.226 Sum_probs=115.2
Q ss_pred cccccccccceeEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEeeCCC-CceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGNKTQVIPLRS-AWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht-~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
.+.+.+-...+..++|+|+.+ ++++....+.|...+. +|+.++.++... +..-+|++..++.++++--.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 345666667799999999766 5556666788888885 688888876543 5578899988888877777789999999
Q ss_pred cCCCCCCCcceEEEEEe-----cCccceeeeEEeCC-CcEEEeecCCeEEEEECCC---CceeE-Ee------eccccCC
Q psy8748 1763 LNNRDSTGAAKVIRELL-----GYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLET---GQRIH-EV------AQAHIGD 1826 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~-----gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~t---g~~i~-~i------l~~h~~~ 1826 (2004)
+..............+. .+...+..++|.+. +.++++-...-..+|.+.. +.... .. .......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 85432221111111111 23455889999864 5677777766555555543 11111 11 1123456
Q ss_pred eEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEEEEecCC---------CCeEEEEEeCCCCEEEEEECCCeEEEE
Q psy8748 1827 VVSISLSPDG-QYFVTGSVDKSCKLWDFREKKCVQTFFGHE---------ADVNSVCFHPSGLAFATGSEDKTARLF 1893 (2004)
Q Consensus 1827 ItsLafSPdg-~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~---------s~ItsIafSPdg~~LaSgS~DGtIrIW 1893 (2004)
+.+++++|.. .+++.+..+..|.++| .+|+.+..+.-.. ...-+|+|.++|+..+ .++-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 8899999964 4566666778899999 6677665553222 2467899999996554 4465555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.012 Score=76.18 Aligned_cols=93 Identities=12% Similarity=0.139 Sum_probs=75.3
Q ss_pred cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCE
Q psy8748 1801 GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLA 1880 (2004)
Q Consensus 1801 ~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~ 1880 (2004)
..|.|.||- ++|+.-..+ ..+-.+++++|+|..-.++.|-.-|.+.+|...+.+.......|..+|..+.|+++|..
T Consensus 39 r~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~ 115 (1416)
T KOG3617|consen 39 RGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTV 115 (1416)
T ss_pred CCceEEEEe-cCCCCCccc--ccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCe
Confidence 467787774 345433222 22344678999999888999999999999999888777777789999999999999999
Q ss_pred EEEEECCCeEEEEEcc
Q psy8748 1881 FATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1881 LaSgS~DGtIrIWDLr 1896 (2004)
++++..-|.|.+|...
T Consensus 116 l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 116 LMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EEEcCCCceeEEEEee
Confidence 9999999999999865
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.39 Score=60.68 Aligned_cols=259 Identities=15% Similarity=0.186 Sum_probs=162.3
Q ss_pred ceeEEEEeCCCCEEEEEe-CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1694 KVNSVHYSGDSRHCVSGS-LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS-~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
....+.+.+++..+.... ....+.+.+................-..++.++.++ .++....++.|.+.|.....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~---- 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT---- 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc----
Confidence 445677778885443332 222455555442221111121213445778888877 44555556889999965432
Q ss_pred ceEEEEEecCccceeeeEEeCC-CcEEEeec---CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-CCC
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDD-TTLLTGSG---DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDK 1846 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~---DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DG 1846 (2004)
....... ......+.+.++ +.+.++.. ++.+.+.|..++........+. .+ ..++++|+|+.+++.. .++
T Consensus 108 --~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~ 182 (381)
T COG3391 108 --VLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDN 182 (381)
T ss_pred --eeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCC
Confidence 1121111 114445555543 35555444 6899999999988887754333 23 8899999999777665 788
Q ss_pred eEEEEECCCCeEEE-E---EecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEEccCCceeEEEcCCCCCCCeEEEEEc
Q psy8748 1847 SCKLWDFREKKCVQ-T---FFGHEADVNSVCFHPSGLAFATGSED---KTARLFDIRADQQIATYLPPNKNSGFTSCAVS 1919 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~-t---l~~h~s~ItsIafSPdg~~LaSgS~D---GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafS 1919 (2004)
.|.+.|........ . ...-......+.++++|+++++.... +.+...|..++.....-...... ....+.++
T Consensus 183 ~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~ 261 (381)
T COG3391 183 TVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVD 261 (381)
T ss_pred eEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeEC
Confidence 99999976655442 1 11223345678999999977665544 58999999888777663333333 45678999
Q ss_pred CCCCEEEEEeCC-CeEEEEECCCCeeeEEEccCCC---CeEEEEEcC
Q psy8748 1920 SSGRYIFCGSDD-NNVHVWDLLKTTHNGVLSGHEN---RVTSISLSP 1962 (2004)
Q Consensus 1920 PdG~~LaSGSsD-GsIrIWDL~tge~l~tL~gHs~---~VtsLaFSP 1962 (2004)
|+|+++.+.... +.+.+.|..+............ .+..+++.+
T Consensus 262 p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 262 PAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred CCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 999999988554 8899999988877776543322 344555544
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00044 Score=87.27 Aligned_cols=244 Identities=18% Similarity=0.229 Sum_probs=143.1
Q ss_pred ccceeEEEEeCCC--CEEEEEeCCCeEEEEECCCCce--EEEeeCCCCceEEEEEec-CCCEEEEee----cCCeEEEEE
Q psy8748 1692 INKVNSVHYSGDS--RHCVSGSLDGKLIIWDTWTGNK--TQVIPLRSAWVMSVAFAQ-SGNFVACGG----MDNMCTVYD 1762 (2004)
Q Consensus 1692 t~~VtsLaFSPDG--~~LASGS~DGtIrVWDl~Tgk~--l~ti~~Ht~~ItsLafSP-dg~~LaSGS----~DGtIrVWD 1762 (2004)
+..+.|+++.-+. ..++.|..+|.|.+-....... ....+++....++++|++ |.+.|++|- .|..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3467788876543 3678898999999987765422 334567888899999998 566777763 356799999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC-CCCEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP-DGQYFV 1840 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP-dg~~La 1840 (2004)
+.++-......... ..+......+++|..+ ..+++|.....+.++|++........ -....+..+.++| .+++++
T Consensus 136 i~s~ltvPke~~~f-s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLF-SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCcccccc-ccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCcee
Confidence 98752111111111 1112233335666644 44777778889999999743221111 1233466778888 777877
Q ss_pred EEECCCeEEEEE-CCCCe-EEEEEec----CCCCeEEEEEeCCCC-EEEEEE-CCCeEEEEEccCCc--------ee---
Q psy8748 1841 TGSVDKSCKLWD-FREKK-CVQTFFG----HEADVNSVCFHPSGL-AFATGS-EDKTARLFDIRADQ--------QI--- 1901 (2004)
Q Consensus 1841 SGS~DGsIrIWD-lrs~k-~I~tl~~----h~s~ItsIafSPdg~-~LaSgS-~DGtIrIWDLrtgk--------~i--- 1901 (2004)
+.. ||.|.+|| .++-+ ++..+.. ....+..++|+|... .+++.. ..++|+.+|+..-. ..
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~ 291 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNY 291 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeee
Confidence 665 99999999 33222 2222211 123488999999432 344444 45789999985311 01
Q ss_pred -EE--EcCCCCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEEC
Q psy8748 1902 -AT--YLPPNKNSGFTSCAVSSSG--RYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1902 -~t--~~~~~~~s~ItsLafSPdG--~~LaSGSsDGsIrIWDL 1939 (2004)
.. +........|.+..|++.. ...+.+-.+-++.-+++
T Consensus 292 ~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 292 ESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred cccccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 11 1112223567788888744 33444444444444443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.19 Score=59.92 Aligned_cols=201 Identities=15% Similarity=0.205 Sum_probs=116.3
Q ss_pred EEEecCccceeeeEEeCC-Cc-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1776 RELLGYEGFLSSCRFIDD-TT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1776 ~sl~gh~~~Vssvafsdd-~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
+.+.+....++.++|.++ +. +++....+.|..++. +|+.+.++.....+..-.+++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 345556667999999964 43 555667788988886 477777765555677899999877777766656899999988
Q ss_pred CCCe------EEEEEe-----cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC---CceeEEEc------CCCCCCCe
Q psy8748 1854 REKK------CVQTFF-----GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA---DQQIATYL------PPNKNSGF 1913 (2004)
Q Consensus 1854 rs~k------~I~tl~-----~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt---gk~i~t~~------~~~~~s~I 1913 (2004)
.... ....+. .++..+-.++|++.++.|+++-...-..+|.++. ........ .......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 4321 112221 2445689999999888888887776667777653 21111110 11223457
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEccCC---------CCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1914 TSCAVSSS-GRYIFCGSDDNNVHVWDLLKTTHNGVLSGHE---------NRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1914 tsLafSPd-G~~LaSGSsDGsIrIWDL~tge~l~tL~gHs---------~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
..++++|. |++++..+.+..|..+| .+|+.+..+.-.. ..--+|+|.++|++ +..++-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL-YIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E-EEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE-EEEcCCceEEEe
Confidence 88999995 55666677788899999 6788776653222 24789999999864 444566655554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.043 Score=70.29 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=71.5
Q ss_pred EEEECCCCce--eEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEE
Q psy8748 1806 VTWNLETGQR--IHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFAT 1883 (2004)
Q Consensus 1806 ~IWDl~tg~~--i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaS 1883 (2004)
++|+...++. +....-.....+.+++++|+...++.|+.||.|.+||...+... .....-.++.++|+|+|..+++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEE
Confidence 4555554432 21222356778999999999999999999999999998766432 3344566789999999999999
Q ss_pred EECCCeEEEEEccCCce
Q psy8748 1884 GSEDKTARLFDIRADQQ 1900 (2004)
Q Consensus 1884 gS~DGtIrIWDLrtgk~ 1900 (2004)
|+..|.+.+||+.-...
T Consensus 317 ~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 317 GSEQGELQCFDMALSPI 333 (545)
T ss_pred EcCCceEEEEEeecCcc
Confidence 99999999999865433
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00025 Score=89.38 Aligned_cols=183 Identities=19% Similarity=0.304 Sum_probs=123.7
Q ss_pred cEEEeecCCeEEEEECCCCcee-EEeeccccCCeEEEEECC-CCCEEEEEE----CCCeEEEEECCCC--eEE--EEEec
Q psy8748 1795 TLLTGSGDMKIVTWNLETGQRI-HEVAQAHIGDVVSISLSP-DGQYFVTGS----VDKSCKLWDFREK--KCV--QTFFG 1864 (2004)
Q Consensus 1795 ~LlSgS~DGtI~IWDl~tg~~i-~~il~~h~~~ItsLafSP-dg~~LaSGS----~DGsIrIWDlrs~--k~I--~tl~~ 1864 (2004)
.+.+|..+|.|.+-..+...-- ..+..++....++++|++ |.+.|++|- .|..+.|||+.++ .+. ..+.+
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~ 151 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS 151 (783)
T ss_pred hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccc
Confidence 4778888999999887654433 455567888899999998 566777764 3557999999876 221 11222
Q ss_pred -CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce-eEEEcCCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE-CC
Q psy8748 1865 -HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ-IATYLPPNKNSGFTSCAVSS-SGRYIFCGSDDNNVHVWD-LL 1940 (2004)
Q Consensus 1865 -h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~-i~t~~~~~~~s~ItsLafSP-dG~~LaSGSsDGsIrIWD-L~ 1940 (2004)
......+++|..+.+.+.+|.....+.++|++.... ...+. ...+..+.++| .++|+++-. ||.|.+|| .+
T Consensus 152 ~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~r 226 (783)
T KOG1008|consen 152 STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYR 226 (783)
T ss_pred ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCceeccc-cCceeeccchh
Confidence 334566899998889999999999999999983322 22221 12356677888 778887764 99999999 33
Q ss_pred CCee-eEEEccCC----CCeEEEEEcCCCC-EEEEEEC-CCeEEEEECC
Q psy8748 1941 KTTH-NGVLSGHE----NRVTSISLSPNGM-ALVTSSW-DQFVKVWQES 1982 (2004)
Q Consensus 1941 tge~-l~tL~gHs----~~VtsLaFSPDg~-~LaSgS~-DGtIrIWdls 1982 (2004)
+-+. +..+.... ..+..++|+|... .+++... .++|+.+++.
T Consensus 227 nienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 227 NIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 3322 22222112 2489999999543 3555555 4789999875
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.26 Score=62.96 Aligned_cols=177 Identities=13% Similarity=0.106 Sum_probs=100.7
Q ss_pred cceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEee-ccccCCe-----EEEEECCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1783 GFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVA-QAHIGDV-----VSISLSPDGQYFVTGSVDKSCKLWDFREK 1856 (2004)
Q Consensus 1783 ~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il-~~h~~~I-----tsLafSPdg~~LaSGS~DGsIrIWDlrs~ 1856 (2004)
+.+.++.|..+..+++...||.+++||+.... ...+. ......| ....+..+| +++-+.++.+.+..-...
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccc
Confidence 78889999999999999999999999986333 11110 0011122 222333344 333344555555432221
Q ss_pred e-EEEEE---ecCC-----C-CeEE-EEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEE
Q psy8748 1857 K-CVQTF---FGHE-----A-DVNS-VCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1857 k-~I~tl---~~h~-----s-~Its-IafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~L 1925 (2004)
. ..+.+ .... . .... ..++.+....+....++.+.+.+-...+. . ...+++..+++||+|+++
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~i 231 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFI 231 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEE
Confidence 1 11111 1100 0 0001 23444555555555566666554332211 1 123579999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEccC-CCCeEEEEEcCCCCEEE
Q psy8748 1926 FCGSDDNNVHVWDLLKTTHNGVLSGH-ENRVTSISLSPNGMALV 1968 (2004)
Q Consensus 1926 aSGSsDGsIrIWDL~tge~l~tL~gH-s~~VtsLaFSPDg~~La 1968 (2004)
|.-..+|.+.+.+..-.+....+... ......+.|+.++..++
T Consensus 232 Al~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 232 ALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred EEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE
Confidence 99999999999987666666555433 45677888887654433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.57 Score=59.43 Aligned_cols=244 Identities=12% Similarity=0.087 Sum_probs=125.8
Q ss_pred ceeEEEEeCCCCEEEEE-eCC----CeEEEEECCCCceEEEe-eCCCCceEEEEEecCCCEEEEeecCC-----------
Q psy8748 1694 KVNSVHYSGDSRHCVSG-SLD----GKLIIWDTWTGNKTQVI-PLRSAWVMSVAFAQSGNFVACGGMDN----------- 1756 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASG-S~D----GtIrVWDl~Tgk~l~ti-~~Ht~~ItsLafSPdg~~LaSGS~DG----------- 1756 (2004)
.+...++||||+++|.+ +.. ..++++|+.+|+.+... ... ....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 44467899999988854 333 35999999999776532 221 123499999988776654332
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEe-e--cC-CeEEEEECCCC----ceeEEeeccccCCe
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTG-S--GD-MKIVTWNLETG----QRIHEVAQAHIGDV 1827 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSg-S--~D-GtI~IWDl~tg----~~i~~il~~h~~~I 1827 (2004)
.|+.|.+.+.. ..-..+............+..+.++ .++.. . .+ ..+++.|...+ .....+.....+..
T Consensus 203 ~v~~~~~gt~~--~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 203 QVYRHKLGTPQ--SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp EEEEEETTS-G--GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred EEEEEECCCCh--HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 36677765432 1111222222222213445555444 43332 2 23 46888888875 22223322233333
Q ss_pred EEEEECCCCCEEEEEE---CCCeEEEEECCCCeE---EEEEecCCCC--eEEEEEeCCCCEEE-EEECCC--eEEEEEcc
Q psy8748 1828 VSISLSPDGQYFVTGS---VDKSCKLWDFREKKC---VQTFFGHEAD--VNSVCFHPSGLAFA-TGSEDK--TARLFDIR 1896 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS---~DGsIrIWDlrs~k~---I~tl~~h~s~--ItsIafSPdg~~La-SgS~DG--tIrIWDLr 1896 (2004)
..+... .+.+++... ..+.|...++..... ...+..+... +..+.. .+.+|+ ....++ .|+++++.
T Consensus 281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 333333 333433332 235677788876652 3355555553 445444 344544 444444 48889988
Q ss_pred CCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe--C--CCeEEEEECCCCeee
Q psy8748 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS--D--DNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1897 tgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS--s--DGsIrIWDL~tge~l 1945 (2004)
.+........+. .+.+..+...++++.+.... . -++++-||+.+++..
T Consensus 358 ~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 358 DGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp -TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 344444443333 24455665556665544322 2 257888898887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0048 Score=79.36 Aligned_cols=115 Identities=21% Similarity=0.230 Sum_probs=90.4
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-
Q psy8748 1868 DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNG- 1946 (2004)
Q Consensus 1868 ~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~- 1946 (2004)
.|.--+++..+++++.|+.-|.+++|+-..+.. ..+......+.+..+.++++..++|+|+..|.|.++-+..+.+..
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 344455667888999999999999999775544 333333345667788899999999999999999999886633221
Q ss_pred ----EE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1947 ----VL-SGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1947 ----tL-~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
.. +.|...|++++|++++..+++|...|+|..-.++.
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11 24788999999999999999999999999988887
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.73 E-value=1.5 Score=60.22 Aligned_cols=200 Identities=15% Similarity=0.112 Sum_probs=118.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCc--------eEEEEEec----------------CCCEEEEeecCCeEE
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAW--------VMSVAFAQ----------------SGNFVACGGMDNMCT 1759 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~--------ItsLafSP----------------dg~~LaSGS~DGtIr 1759 (2004)
+..++.++.++.|.-.|..+|+.+..+...... .+.+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888999999999988877543211 12233321 345788888999999
Q ss_pred EEEcCCCCCCCcceE-----EEEEec-Cc-c--ceeeeEEeCCCcEEEeec----------CCeEEEEECCCCceeEEee
Q psy8748 1760 VYDLNNRDSTGAAKV-----IRELLG-YE-G--FLSSCRFIDDTTLLTGSG----------DMKIVTWNLETGQRIHEVA 1820 (2004)
Q Consensus 1760 VWDl~t~~~~~~~k~-----i~sl~g-h~-~--~Vssvafsdd~~LlSgS~----------DGtI~IWDl~tg~~i~~il 1820 (2004)
..|.++++....+.. ...-.+ .. . .+++.-..-++.+++|+. +|.|+-+|.++|+......
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 999887653321110 000000 00 0 011111123456666643 6889999999999886653
Q ss_pred cccc--------C--------Ce-EEEEECCCCCEEEEEEC------------------CCeEEEEECCCCeEEEEEecC
Q psy8748 1821 QAHI--------G--------DV-VSISLSPDGQYFVTGSV------------------DKSCKLWDFREKKCVQTFFGH 1865 (2004)
Q Consensus 1821 ~~h~--------~--------~I-tsLafSPdg~~LaSGS~------------------DGsIrIWDlrs~k~I~tl~~h 1865 (2004)
.+.. + .+ ..++++++...++.+.. .+.|.-.|.++++....++..
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 2210 0 11 23456665555554321 245777788888887777542
Q ss_pred CCCeEE---------EEEeC-CCC---EEEEEECCCeEEEEEccCCceeEE
Q psy8748 1866 EADVNS---------VCFHP-SGL---AFATGSEDKTARLFDIRADQQIAT 1903 (2004)
Q Consensus 1866 ~s~Its---------IafSP-dg~---~LaSgS~DGtIrIWDLrtgk~i~t 1903 (2004)
...+.. +.+.. +|+ .++.++.+|.+.++|.++|+.+..
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 222221 22322 553 688999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.29 Score=60.06 Aligned_cols=220 Identities=15% Similarity=0.102 Sum_probs=125.9
Q ss_pred EEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEe
Q psy8748 1741 AFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV 1819 (2004)
Q Consensus 1741 afSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~i 1819 (2004)
.|.++.. .+.+--..+.|.-|+..++. ...+. ..+.+.+....+....+.++..| +.+++.+++......
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~-------~~~~~-~p~~~~~~~~~d~~g~Lv~~~~g-~~~~~~~~~~~~t~~ 101 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK-------KRVFP-SPGGFSSGALIDAGGRLIACEHG-VRLLDPDTGGKITLL 101 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc-------eEEEE-CCCCcccceeecCCCeEEEEccc-cEEEeccCCceeEEe
Confidence 4556555 33444455667777665331 11111 22223344444433333333333 455666555442222
Q ss_pred ec----cccCCeEEEEECCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE
Q psy8748 1820 AQ----AHIGDVVSISLSPDGQYFVTGSV-----------DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATG 1884 (2004)
Q Consensus 1820 l~----~h~~~ItsLafSPdg~~LaSGS~-----------DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSg 1884 (2004)
.. ..........+.|+|.+.+.... -|.++.+|. .+..++.+..+-..-++++|+||++.++.+
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 11 11234567888888875554333 133444443 455556565555667899999999887776
Q ss_pred EC-CCeEEEEEccC--C---ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeeeEEEccCCCCeEE
Q psy8748 1885 SE-DKTARLFDIRA--D---QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN-NVHVWDLLKTTHNGVLSGHENRVTS 1957 (2004)
Q Consensus 1885 S~-DGtIrIWDLrt--g---k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDG-sIrIWDL~tge~l~tL~gHs~~Vts 1957 (2004)
.. .+.|.-|++.. + ............+..-.++...+|++.+++..+| .|.+|+.. |+.+..+......+++
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 65 47788887752 1 1111111122234455678888999886655554 89999987 9999999887788999
Q ss_pred EEEc-CCCCEEEEEE
Q psy8748 1958 ISLS-PNGMALVTSS 1971 (2004)
Q Consensus 1958 LaFS-PDg~~LaSgS 1971 (2004)
++|- ++.+.|+..+
T Consensus 260 ~~FgG~~~~~L~iTs 274 (307)
T COG3386 260 PAFGGPDLNTLYITS 274 (307)
T ss_pred ceEeCCCcCEEEEEe
Confidence 9995 4445444443
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.89 Score=61.39 Aligned_cols=286 Identities=12% Similarity=0.128 Sum_probs=161.6
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEE--ECCCCceEEEe--eCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIW--DTWTGNKTQVI--PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVW--Dl~Tgk~l~ti--~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~ 1769 (2004)
.|--..|-.|..+|.++..||.+.-+ |..+|..-..- .....++.=-.|+..++.-+.+..|.-..+|..+.
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~---- 660 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG---- 660 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC----
Confidence 34455555678899999999998766 55555433222 23455666667766555444444455555665432
Q ss_pred CcceEEEEEecCccceeeeEEeCCCc--EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC--
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFIDDTT--LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD-- 1845 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafsdd~~--LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D-- 1845 (2004)
+.......-...-..+.|.++.. .++....+.+.+.-++.-+.++...-.-......+++.+....+.+.+..
T Consensus 661 ---kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e 737 (1096)
T KOG1897|consen 661 ---KLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIE 737 (1096)
T ss_pred ---cEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccc
Confidence 11111111111122233333222 33444455666666554333221112334456677777644444444321
Q ss_pred ------------CeEEEEECCCCeEEEEEec-CC---CCeEEEEEeCC-CCEEEEEEC----------CCeEEEEEccCC
Q psy8748 1846 ------------KSCKLWDFREKKCVQTFFG-HE---ADVNSVCFHPS-GLAFATGSE----------DKTARLFDIRAD 1898 (2004)
Q Consensus 1846 ------------GsIrIWDlrs~k~I~tl~~-h~---s~ItsIafSPd-g~~LaSgS~----------DGtIrIWDLrtg 1898 (2004)
..++++|-++.+.+....- .. ..|.++.|..| +.++++|.. .|.|.+|.+..+
T Consensus 738 ~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~ 817 (1096)
T KOG1897|consen 738 SSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL 817 (1096)
T ss_pred cchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC
Confidence 1366777666554433221 11 23455568777 667777763 578888888774
Q ss_pred ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q psy8748 1899 QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKV 1978 (2004)
Q Consensus 1899 k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrI 1978 (2004)
+.+.........+.+.++..- +|+++|. -+..|++|+..+.+.++.-..|..++..+...-.|..++.|.--+.+.+
T Consensus 818 ~~L~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 818 NSLELVAETVVKGAVYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred Cceeeeeeeeeccceeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 444443222223334443321 5666664 4668999999888788777788999999999999999999988777666
Q ss_pred E--ECCCCeEEEE
Q psy8748 1979 W--QESNTIVWKV 1989 (2004)
Q Consensus 1979 W--dlstg~l~k~ 1989 (2004)
- +-..|...+.
T Consensus 895 l~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 895 LQYKGDEGNFEEV 907 (1096)
T ss_pred EEEeccCCceEEe
Confidence 4 4444434333
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.1 Score=70.38 Aligned_cols=136 Identities=16% Similarity=0.262 Sum_probs=95.5
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCC-eEEEEEeC-----CCCEEEEEECCCeEEEEEccCCc--eeEE-EcCCCCCCCeE
Q psy8748 1844 VDKSCKLWDFREKKCVQTFFGHEAD-VNSVCFHP-----SGLAFATGSEDKTARLFDIRADQ--QIAT-YLPPNKNSGFT 1914 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~k~I~tl~~h~s~-ItsIafSP-----dg~~LaSgS~DGtIrIWDLrtgk--~i~t-~~~~~~~s~It 1914 (2004)
....++-.|+..|+.+..+..+... |..++-.. ++..-+.|-.+..+..||.|-.. .+.. ...-......+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4578999999999999999887654 55543221 12345667778899999998643 2211 11112334577
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1915 SCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1915 sLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
|++-+.+| +||+|+.+|.||+||-........+.+-..+|.+|..+.||+++++.+ +..+.+++.
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 77777665 689999999999999533333334567789999999999999988777 456777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.6 Score=53.75 Aligned_cols=247 Identities=12% Similarity=0.066 Sum_probs=115.3
Q ss_pred CCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCC
Q psy8748 1734 SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETG 1813 (2004)
Q Consensus 1734 t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg 1813 (2004)
...+.+|.|..+..-+++|. .|. ++....+................-....+.|.++..++ ++..|. .+.-.+.|
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~i-vG~~g~-ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWI-VGEPGL-LLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEE-EEETTE-EEEESSTT
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEE-EcCCce-EEEecCCC
Confidence 45789999985566666654 453 34444332221111111111112345567776554444 444553 33333444
Q ss_pred ceeEEee--ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE-EEEEecCCCCeEEEEEeCCCCEEEEEECCCeE
Q psy8748 1814 QRIHEVA--QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC-VQTFFGHEADVNSVCFHPSGLAFATGSEDKTA 1890 (2004)
Q Consensus 1814 ~~i~~il--~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~-I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtI 1890 (2004)
+.-..+. ..-.+....+....++ ....++..|.|+.=. +.++. ........+.+..+..+++|.+++++......
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~ 168 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY 168 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence 4333321 1122333444444344 333344555544322 22221 22233455778889999999999888766556
Q ss_pred EEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCeeeEE----EccCCCCeEEEEEcCCCC
Q psy8748 1891 RLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL-LKTTHNGV----LSGHENRVTSISLSPNGM 1965 (2004)
Q Consensus 1891 rIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL-~tge~l~t----L~gHs~~VtsLaFSPDg~ 1965 (2004)
.-||--...-.... ......|..+.|.|++...+++ ..|.|++=+. ...+.-.. .....-.+.+++|.+++.
T Consensus 169 ~s~~~G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 169 SSWDPGQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp EEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred EEecCCCccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence 67775322111111 1234679999999998877755 8888988872 22222111 111233489999999988
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1966 ALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1966 ~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
..++|+ .|. -+...+.|+.|+..+.
T Consensus 246 ~wa~gg-~G~-l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 246 IWAVGG-SGT-LLVSTDGGKTWQKDRV 270 (302)
T ss_dssp EEEEES-TT--EEEESSTTSS-EE-GG
T ss_pred EEEEeC-Ccc-EEEeCCCCccceECcc
Confidence 777666 453 4667888888877653
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=4.2 Score=50.70 Aligned_cols=275 Identities=13% Similarity=0.095 Sum_probs=138.8
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEee----CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG-NKTQVIP----LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg-k~l~ti~----~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
...+.+|+|..+.+-+++|. +|.| |...++ +.-.... .....+.++.|..+ ..+++ +..|. +|...++
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCC
Confidence 56889999986556566664 5543 333332 2222111 12334777877643 34444 44453 3333332
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK 1846 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG 1846 (2004)
.. .................+....+..+..++..|.|..=+ +.|+.-..+.....+.+.++.+.+++.+++++. .|
T Consensus 118 G~--tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G 193 (334)
T PRK13684 118 GK--NWTRIPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RG 193 (334)
T ss_pred CC--CCeEccCCcCCCCCceEEEEECCCcceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-Cc
Confidence 21 111111100011111222223333344445555554322 233333233333456788999999887665554 56
Q ss_pred eEEEE-ECCCCe-EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC--CCCCCeEEEEEcCCC
Q psy8748 1847 SCKLW-DFREKK-CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP--NKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1847 sIrIW-Dlrs~k-~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~--~~~s~ItsLafSPdG 1922 (2004)
.+..- |- .++ -..........++++.+.++++.++++ ..|.+.+=..+.+..-.....+ .....+..+.+.+++
T Consensus 194 ~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~ 271 (334)
T PRK13684 194 NFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG 271 (334)
T ss_pred eEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCC
Confidence 55432 22 222 112222345678999999999877765 4676653233444332222111 122457788999988
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLS---GHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge~l~tL~---gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
..+++| .+|.+. .....++.-.... .-......+.|..+++.++ .|..|.|--|+-.
T Consensus 272 ~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~~ 331 (334)
T PRK13684 272 EIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVGS 331 (334)
T ss_pred CEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecCC
Confidence 766655 567554 3334444333332 2223578888877766555 5568888777643
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.21 Score=66.13 Aligned_cols=228 Identities=9% Similarity=0.078 Sum_probs=110.9
Q ss_pred eEEEEECCCCceEEEeeCCCCce-EEEEEecCCCEEEEeecC------CeEEEEEcCCCCCCCcceEEEEEecCccceee
Q psy8748 1715 KLIIWDTWTGNKTQVIPLRSAWV-MSVAFAQSGNFVACGGMD------NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787 (2004)
Q Consensus 1715 tIrVWDl~Tgk~l~ti~~Ht~~I-tsLafSPdg~~LaSGS~D------GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vss 1787 (2004)
.+..||..+++....-....... .+++. -++..++.||.+ ..+..||..+.. ........... .-.+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~----W~~~~~m~~~R-~~~~ 346 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKI----HVELPPMIKNR-CRFS 346 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCe----EeeCCCCcchh-hcee
Confidence 56778877765332211111111 12222 357777778754 246667765432 11111111111 1123
Q ss_pred eEEeCCCcEEEeecCC-----eEEEEECCCCceeEEeeccc-cCCeEEEEECCCCCEEEEEECCC---------------
Q psy8748 1788 CRFIDDTTLLTGSGDM-----KIVTWNLETGQRIHEVAQAH-IGDVVSISLSPDGQYFVTGSVDK--------------- 1846 (2004)
Q Consensus 1788 vafsdd~~LlSgS~DG-----tI~IWDl~tg~~i~~il~~h-~~~ItsLafSPdg~~LaSGS~DG--------------- 1846 (2004)
++..++...+.||.++ .+..||..+++......-.. ......+.+ +|+..+.||.++
T Consensus 347 ~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 347 LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred EEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccc
Confidence 3444666677777654 48889988765432110011 111112222 577777777553
Q ss_pred --------eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC------eEEEEEccC-CceeEEEcCCCCCC
Q psy8748 1847 --------SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK------TARLFDIRA-DQQIATYLPPNKNS 1911 (2004)
Q Consensus 1847 --------sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG------tIrIWDLrt-gk~i~t~~~~~~~s 1911 (2004)
.+..||..+.+-...-.-.......-...-+|+..+.|+.++ .+..||..+ .+-......+....
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 477788776543211111111111111223566667776542 467898876 33322211122212
Q ss_pred CeEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEEccCC
Q psy8748 1912 GFTSCAVSSSGRYIFCGSDDN--NVHVWDLLKTTHNGVLSGHE 1952 (2004)
Q Consensus 1912 ~ItsLafSPdG~~LaSGSsDG--sIrIWDL~tge~l~tL~gHs 1952 (2004)
....+. -+|++.++|+.+| .+..||..+.+-......|.
T Consensus 505 ~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 505 ALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred cceeEE--ECCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 222222 2788889999888 77788877665544444444
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.2 Score=66.38 Aligned_cols=200 Identities=16% Similarity=0.228 Sum_probs=112.4
Q ss_pred eeeeEEeCCCcEEEeecC------CeEEEEECCCCceeEEe-eccccCCeEEEEECCCCCEEEEEECCC-----eEEEEE
Q psy8748 1785 LSSCRFIDDTTLLTGSGD------MKIVTWNLETGQRIHEV-AQAHIGDVVSISLSPDGQYFVTGSVDK-----SCKLWD 1852 (2004)
Q Consensus 1785 Vssvafsdd~~LlSgS~D------GtI~IWDl~tg~~i~~i-l~~h~~~ItsLafSPdg~~LaSGS~DG-----sIrIWD 1852 (2004)
-.+++..++..+++|+.| ..+..||..+++..... ......... ++. -+|...++||.|| ++-.||
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~~-l~g~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VAV-LDGKLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eEE-ECCEEEEEeccccccccccEEEec
Confidence 445566677778888888 35788998887744211 011111111 111 1578888999887 477888
Q ss_pred CCCCeEEEEEecCCCCeEEEEE-eCCCCEEEEEECCC------eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEE
Q psy8748 1853 FREKKCVQTFFGHEADVNSVCF-HPSGLAFATGSEDK------TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1853 lrs~k~I~tl~~h~s~ItsIaf-SPdg~~LaSgS~DG------tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~L 1925 (2004)
..+.+-...- .......+... .-+|...++||.+| .+..||..+++....-.......... ...-++.+.
T Consensus 403 p~~~~W~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iY 479 (571)
T KOG4441|consen 403 PVTNKWTPVA-PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIY 479 (571)
T ss_pred CCCCcccccC-CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEE
Confidence 7765422111 11112222222 22677778887654 47788887665433322122112222 223367888
Q ss_pred EEEeCCCe-----EEEEECCCCeeeEE--EccCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEEe
Q psy8748 1926 FCGSDDNN-----VHVWDLLKTTHNGV--LSGHENRVTSISLSPNGMALVTSSWDQ-----FVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1926 aSGSsDGs-----IrIWDL~tge~l~t--L~gHs~~VtsLaFSPDg~~LaSgS~DG-----tIrIWdlstg~l~k~Ik~ 1992 (2004)
++|+.||. |..||..+.+-... .......+....+ ++...+.||.|| +|..||..+++ |.....
T Consensus 480 vvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~-W~~~~~ 555 (571)
T KOG4441|consen 480 VVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT-WTEVTE 555 (571)
T ss_pred EECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc-eeeCCC
Confidence 88888763 77788766443322 2222333333333 667788888886 58889888774 766654
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.73 Score=63.02 Aligned_cols=198 Identities=14% Similarity=0.156 Sum_probs=124.3
Q ss_pred CCcEEEeecCCeEEEEECCCCceeEEeeccccC-------CeEEEEEC----------------CCCCEEEEEECCCeEE
Q psy8748 1793 DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIG-------DVVSISLS----------------PDGQYFVTGSVDKSCK 1849 (2004)
Q Consensus 1793 d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~-------~ItsLafS----------------Pdg~~LaSGS~DGsIr 1849 (2004)
++.++.++.++.|.-.|..+|+.+.+....... ....+++. .++..++.++.||.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777888889999999998877665321110 01122221 1345788899999999
Q ss_pred EEECCCCeEEEEEecCCCCeE-------------EEEEeC--CCCEEEEEEC----------CCeEEEEEccCCceeEEE
Q psy8748 1850 LWDFREKKCVQTFFGHEADVN-------------SVCFHP--SGLAFATGSE----------DKTARLFDIRADQQIATY 1904 (2004)
Q Consensus 1850 IWDlrs~k~I~tl~~h~s~It-------------sIafSP--dg~~LaSgS~----------DGtIrIWDLrtgk~i~t~ 1904 (2004)
-.|.++++....+.. .+.+. .+.-.| .+..+++|+. +|.|+-+|.++|+....+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876632 22211 111112 2345666643 688999999999999887
Q ss_pred cCCCC----------------CCCeEEEEEcCCCCEEEEEeC------------------CCeEEEEECCCCeeeEEEcc
Q psy8748 1905 LPPNK----------------NSGFTSCAVSSSGRYIFCGSD------------------DNNVHVWDLLKTTHNGVLSG 1950 (2004)
Q Consensus 1905 ~~~~~----------------~s~ItsLafSPdG~~LaSGSs------------------DGsIrIWDL~tge~l~tL~g 1950 (2004)
..... ...-...+++++...++.+.. .+.|.-.|.++|+....++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 43110 001134566666666555331 34577778889998888765
Q ss_pred CCCCeEE---------EEEcC-CCC---EEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1951 HENRVTS---------ISLSP-NGM---ALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1951 Hs~~Vts---------LaFSP-Dg~---~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
..+.+.+ +.+.. +|+ .++.++.+|.++++|.++|+.+-.++
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 2222222 12222 553 79999999999999999997655443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.16 Score=65.03 Aligned_cols=163 Identities=20% Similarity=0.151 Sum_probs=101.3
Q ss_pred ccCCeEEEEECCCCCEEEEEE---CC-CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCe--EEEEEc
Q psy8748 1823 HIGDVVSISLSPDGQYFVTGS---VD-KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS-EDKT--ARLFDI 1895 (2004)
Q Consensus 1823 h~~~ItsLafSPdg~~LaSGS---~D-GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGt--IrIWDL 1895 (2004)
....+..-+|+|++..++... .. ..+.++|+.+++...... ..+.-..-+|+|||+.++.+. .||. |.++|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 344566678899888655432 22 359999999876544432 233344567999998866544 4565 667777
Q ss_pred cCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCe--EEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEEC
Q psy8748 1896 RADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNN--VHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1896 rtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGs--IrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
.++.... +. ...+.-+.-.|+|||++++..++ .|. |.++|...... ..+....+.-..-.|+|||++++..+.
T Consensus 270 ~~~~~~~-Lt--~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 270 DGKNLPR-LT--NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred CCCccee-cc--cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEec
Confidence 7666333 21 11122236789999999887655 444 66667655544 333333333337789999999988875
Q ss_pred C-Ce--EEEEECCCCeEEEEE
Q psy8748 1973 D-QF--VKVWQESNTIVWKVL 1990 (2004)
Q Consensus 1973 D-Gt--IrIWdlstg~l~k~I 1990 (2004)
. |. |.+.++.++..++.+
T Consensus 346 ~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 346 SGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred cCCceeeEEeccCCCCcEEEc
Confidence 3 44 777777666544443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.38 Score=63.35 Aligned_cols=192 Identities=13% Similarity=0.172 Sum_probs=124.4
Q ss_pred CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEE----------EEECCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q psy8748 1793 DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVS----------ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF 1862 (2004)
Q Consensus 1793 d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~Its----------LafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl 1862 (2004)
++.+++++.++.|+-+|..+|+.+.+........+.. +++ .+..+++++.||.+.-+|.++++.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 5577778888899999999998876653221111111 122 2456778889999999999999987765
Q ss_pred ecCCCC-eEEEEEeC---CCCEEEEEEC------CCeEEEEEccCCceeEEEcCCCCC----------------------
Q psy8748 1863 FGHEAD-VNSVCFHP---SGLAFATGSE------DKTARLFDIRADQQIATYLPPNKN---------------------- 1910 (2004)
Q Consensus 1863 ~~h~s~-ItsIafSP---dg~~LaSgS~------DGtIrIWDLrtgk~i~t~~~~~~~---------------------- 1910 (2004)
...... -..+.-+| ++ .++++.. +|.|.-+|.++|+.+..+......
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 421110 00111112 34 4555542 689999999999998876432211
Q ss_pred -------CC-eEEEEEcCCCCEEEEEeCC-----C-----------eEEEEECCCCeeeEEEccCCCCeEE---------
Q psy8748 1911 -------SG-FTSCAVSSSGRYIFCGSDD-----N-----------NVHVWDLLKTTHNGVLSGHENRVTS--------- 1957 (2004)
Q Consensus 1911 -------s~-ItsLafSPdG~~LaSGSsD-----G-----------sIrIWDL~tge~l~tL~gHs~~Vts--------- 1957 (2004)
.. -..+++++...+++.+..+ + +|.-.|+++|+....++.....+.+
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 01 1245778877777777632 2 6777899999998888653333222
Q ss_pred EEEcCCCC---EEEEEECCCeEEEEECCCCeEE
Q psy8748 1958 ISLSPNGM---ALVTSSWDQFVKVWQESNTIVW 1987 (2004)
Q Consensus 1958 LaFSPDg~---~LaSgS~DGtIrIWdlstg~l~ 1987 (2004)
+.+..+|+ .++.++.+|.+++.|..+|+.+
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 22224665 7889999999999999999764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.22 Score=66.04 Aligned_cols=193 Identities=8% Similarity=0.103 Sum_probs=103.6
Q ss_pred EEeCCCcEEEeecC------CeEEEEECCCCceeEEeec--cccCCeEEEEECCCCCEEEEEECCC-----eEEEEECCC
Q psy8748 1789 RFIDDTTLLTGSGD------MKIVTWNLETGQRIHEVAQ--AHIGDVVSISLSPDGQYFVTGSVDK-----SCKLWDFRE 1855 (2004)
Q Consensus 1789 afsdd~~LlSgS~D------GtI~IWDl~tg~~i~~il~--~h~~~ItsLafSPdg~~LaSGS~DG-----sIrIWDlrs 1855 (2004)
+..++..+++||.+ ..+..||..++... .... ...... +++. -+|+..+.||.+| .+..||..+
T Consensus 300 a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~-~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRF-SLAV-IDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred EEECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhce-eEEE-ECCEEEEECCcCCCCCCceEEEEECCC
Confidence 33455566666643 35788898877542 1111 011111 2222 2577778888764 488899876
Q ss_pred CeEEE--EEecCCCCeEEEEEeCCCCEEEEEECCC-----------------------eEEEEEccCCceeEEEcCCCCC
Q psy8748 1856 KKCVQ--TFFGHEADVNSVCFHPSGLAFATGSEDK-----------------------TARLFDIRADQQIATYLPPNKN 1910 (2004)
Q Consensus 1856 ~k~I~--tl~~h~s~ItsIafSPdg~~LaSgS~DG-----------------------tIrIWDLrtgk~i~t~~~~~~~ 1910 (2004)
.+-.. .+.........+ .-+|...+.||.++ .+..||..+.+-...- +-..
T Consensus 377 ~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~--~m~~ 452 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP--NFWT 452 (557)
T ss_pred CeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC--CCCc
Confidence 54221 111111111112 22577777777653 4777887765432211 1111
Q ss_pred CCeEEEEEcCCCCEEEEEeCC------CeEEEEECCC---CeeeEEEccCCCCeEEEEEcCCCCEEEEEECCC--eEEEE
Q psy8748 1911 SGFTSCAVSSSGRYIFCGSDD------NNVHVWDLLK---TTHNGVLSGHENRVTSISLSPNGMALVTSSWDQ--FVKVW 1979 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGSsD------GsIrIWDL~t---ge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG--tIrIW 1979 (2004)
......+..-+|++.++|+.+ ..+..||..+ ++.+..+.........+.+ +|+..++||.|| .+..|
T Consensus 453 ~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 453 GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhc
Confidence 111122223357777777754 2467898875 3344444333333333333 788899999998 78889
Q ss_pred ECCCCeEEEEEE
Q psy8748 1980 QESNTIVWKVLK 1991 (2004)
Q Consensus 1980 dlstg~l~k~Ik 1991 (2004)
|..+++ |..+.
T Consensus 531 d~~~~~-W~~~~ 541 (557)
T PHA02713 531 NVYTYE-WNHIC 541 (557)
T ss_pred Cccccc-ccchh
Confidence 998874 66554
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.56 Score=59.74 Aligned_cols=85 Identities=13% Similarity=0.234 Sum_probs=55.2
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCC-----------------CCE-E
Q psy8748 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS-----------------GRY-I 1925 (2004)
Q Consensus 1864 ~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPd-----------------G~~-L 1925 (2004)
.....+.+++.+|++++.++...=|+|.++|+.++..+..+..-.. ..+.-+..... ..+ +
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd-Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD-AQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc-ceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 3445688999999999988888889999999998877666532111 11111111111 112 2
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEc
Q psy8748 1926 FCGSDDNNVHVWDLLKTTHNGVLS 1949 (2004)
Q Consensus 1926 aSGSsDGsIrIWDL~tge~l~tL~ 1949 (2004)
+-+-.-|.|.||++++|..+..+.
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEE
Confidence 344567899999998887776654
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=4.7 Score=48.63 Aligned_cols=276 Identities=13% Similarity=0.082 Sum_probs=149.9
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCC--CCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLR--SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~H--t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
+-+..+.++ +++...+..+.-++|.|+.+......+..- .+.-+++. -.|++..++..|.-..+.|+.+..
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdps--- 159 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPS--- 159 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCC---
Confidence 456677777 456666667777999999887655443321 13334444 459999888866668888987653
Q ss_pred cceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEee-ccccCCeEEEEECCCCCEEEEEECCCeEE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVA-QAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il-~~h~~~ItsLafSPdg~~LaSGS~DGsIr 1849 (2004)
.................++. .+++...+..|+-+.+.|+.......-+- ......+.++..+++..+++..+ --+.
T Consensus 160 sP~lagrya~~~~d~~~v~I-SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvl 236 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAI-SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVL 236 (370)
T ss_pred CceeeeeeccCCCCceeEEE-ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceE
Confidence 22223333333332233333 45677778889999999998765432221 12233678888876655555543 3577
Q ss_pred EEECCCCeEEEEEe--cCCCCeEEE-EEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC-CCCCCCeEEEEEcCCCCEE
Q psy8748 1850 LWDFREKKCVQTFF--GHEADVNSV-CFHPSGLAFATGSEDKTARLFDIRADQQIATYLP-PNKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1850 IWDlrs~k~I~tl~--~h~s~ItsI-afSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~-~~~~s~ItsLafSPdG~~L 1925 (2004)
+-|....+....+- .... +.++ .+.-.+++......+.-+.+-|+.+......... ......-..+.. .|.++
T Consensus 237 ivd~s~~ssp~~~gsyet~~-p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~ 313 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSN-PVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYN 313 (370)
T ss_pred EEecCCCCCceEeeccccCC-cccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCee
Confidence 77776655333331 2222 2222 2233455666666666666667654322111100 000011122222 34555
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1926 FCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1926 aSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
..+..+ ...+-+....+......+....+.+.+.+-+.+.+.+...+|.+.+|+..
T Consensus 314 yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 314 YIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred EeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 555544 44555554433333222222233444444455678888889989998753
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=96.04 E-value=4 Score=55.57 Aligned_cols=286 Identities=15% Similarity=0.162 Sum_probs=148.1
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe-eCCCCceEEEEEecCC------CEEEEeecCCeEEEEEcCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI-PLRSAWVMSVAFAQSG------NFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti-~~Ht~~ItsLafSPdg------~~LaSGS~DGtIrVWDl~t 1765 (2004)
+.++....+.+...++.++.++.+...++..+...... +.....|.|+.++|-| +++++|.++..+.+.-...
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 44555555556667777777777777777766632222 2235678999998742 2788888877666655432
Q ss_pred CCCCCcceEEEEEecCcc---ceeeeEEe-CCCcEEEeecCCeEEEEECC--CCceeEEe-eccccCCeEEEEECCCCC-
Q psy8748 1766 RDSTGAAKVIRELLGYEG---FLSSCRFI-DDTTLLTGSGDMKIVTWNLE--TGQRIHEV-AQAHIGDVVSISLSPDGQ- 1837 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~---~Vssvafs-dd~~LlSgS~DGtI~IWDl~--tg~~i~~i-l~~h~~~ItsLafSPdg~- 1837 (2004)
.. ........+... .+.-..+- +..+++++..||.+..|-+. ++..-... ..-...++.--.|+..++
T Consensus 568 d~----~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t 643 (1096)
T KOG1897|consen 568 DL----ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRT 643 (1096)
T ss_pred Cc----ceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCce
Confidence 21 111111111111 12222222 46789999999998776544 33321100 000111122112222111
Q ss_pred EEEEE-----------------------------------------ECCCeEEEEECCCCe--EEEEEecCCCCeEEEEE
Q psy8748 1838 YFVTG-----------------------------------------SVDKSCKLWDFREKK--CVQTFFGHEADVNSVCF 1874 (2004)
Q Consensus 1838 ~LaSG-----------------------------------------S~DGsIrIWDlrs~k--~I~tl~~h~s~ItsIaf 1874 (2004)
.+++. ...|.+++.-++.-+ .++++ ......+.+++
T Consensus 644 ~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtv-pl~~~prrI~~ 722 (1096)
T KOG1897|consen 644 AVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTV-PLGESPRRICY 722 (1096)
T ss_pred EEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeee-cCCCChhheEe
Confidence 11111 112233333322111 12232 23455667788
Q ss_pred eCCCCEEEEEECC--------------CeEEEEEccCCceeEEEcCCCC--CCCeEEEEEcCC-CCEEEEEeC-------
Q psy8748 1875 HPSGLAFATGSED--------------KTARLFDIRADQQIATYLPPNK--NSGFTSCAVSSS-GRYIFCGSD------- 1930 (2004)
Q Consensus 1875 SPdg~~LaSgS~D--------------GtIrIWDLrtgk~i~t~~~~~~--~s~ItsLafSPd-G~~LaSGSs------- 1930 (2004)
.+....+.+.+.. ..++++|-++.+.......... ...+.++.|..| +.++++|+.
T Consensus 723 q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ 802 (1096)
T KOG1897|consen 723 QESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDEN 802 (1096)
T ss_pred cccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCC
Confidence 7755555544421 1367777776666554433322 233556668887 778888863
Q ss_pred ---CCeEEEEECCCCeeeEEEccC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1931 ---DNNVHVWDLLKTTHNGVLSGH--ENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1931 ---DGsIrIWDL~tge~l~tL~gH--s~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
.|.|.+|.+..+..+.....+ .+.+.++.. -+|+++|.-+ ..|++|+..+++.
T Consensus 803 ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In--~~vrLye~t~~~e 860 (1096)
T KOG1897|consen 803 EPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGIN--QSVRLYEWTTERE 860 (1096)
T ss_pred CcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEecC--cEEEEEEccccce
Confidence 588999888774444433222 344444432 2666666544 6799999988743
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.46 Score=63.31 Aligned_cols=199 Identities=13% Similarity=0.096 Sum_probs=115.0
Q ss_pred cccceeEEEEeCCCCEEEEEe------CCC--eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeE-EEE
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGS------LDG--KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMC-TVY 1761 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS------~DG--tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtI-rVW 1761 (2004)
....+.+.+++|||+.++..- .|+ .|.+++. .+.......+. ....-.|+|+|..+++......+ ++.
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 334678999999999887654 243 4555564 33332222322 37788999999888776532211 111
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
.....+.+.+.+++.+.... ...+.|..+.|+|||..++.
T Consensus 425 ------------------------------------~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 425 ------------------------------------RDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAM 464 (591)
T ss_pred ------------------------------------ccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEE
Confidence 11124566666776655432 33567999999999998888
Q ss_pred EECCCeEEE---EECCCCeE-E---EEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEE-cCCCCCCC
Q psy8748 1842 GSVDKSCKL---WDFREKKC-V---QTFF-GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY-LPPNKNSG 1912 (2004)
Q Consensus 1842 GS~DGsIrI---WDlrs~k~-I---~tl~-~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~-~~~~~~s~ 1912 (2004)
.. +|.|++ -....+.. + ..+. .....+..+.|..++.++ ++..++...+|.+.-....... ...+....
T Consensus 465 i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~ 542 (591)
T PRK13616 465 II-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAP 542 (591)
T ss_pred EE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCc
Confidence 76 577777 44444431 1 1121 233346889999998854 5555555555654322222222 22223456
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEE
Q psy8748 1913 FTSCAVSSSGRYIFCGSDDNNVHV 1936 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsDGsIrI 1936 (2004)
+..++-++ ..+++.+.+|.+.+
T Consensus 543 v~~vaa~~--~~iyv~~~~g~~~l 564 (591)
T PRK13616 543 VVAVAASP--STVYVTDARAVLQL 564 (591)
T ss_pred eEEEecCC--ceEEEEcCCceEEe
Confidence 66777665 34666667774443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.43 Score=61.17 Aligned_cols=202 Identities=20% Similarity=0.179 Sum_probs=117.1
Q ss_pred EEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee---cC-CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1716 LIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG---MD-NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1716 IrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS---~D-GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
+.+-|.. |.....+......+..-.|+|++..++... .. ..+.+++++.+.. ..+.. ..+.-..-.|+
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~----~~i~~---~~g~~~~P~fs 246 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR----PVILN---FNGNNGAPAFS 246 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc----ceeec---cCCccCCccCC
Confidence 3344433 555555555556677788999988655442 22 4688899887632 22222 23333445566
Q ss_pred CCCc--EEEeecCCe--EEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC-C--eEEEEECCCCeEEEEEec
Q psy8748 1792 DDTT--LLTGSGDMK--IVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD-K--SCKLWDFREKKCVQTFFG 1864 (2004)
Q Consensus 1792 dd~~--LlSgS~DGt--I~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D-G--sIrIWDlrs~k~I~tl~~ 1864 (2004)
+++. +++...||. |+++|+..+... + +....+.-+.-.|+|||++++..+.. | .|.++|.+.... ..+..
T Consensus 247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~ 323 (425)
T COG0823 247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLP-R-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF 323 (425)
T ss_pred CCCCEEEEEECCCCCccEEEEcCCCCcce-e-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec
Confidence 5443 555556664 667788777633 2 22333333467899999988877643 3 377777766654 33333
Q ss_pred CCCCeEEEEEeCCCCEEEEEECC-Ce--EEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC
Q psy8748 1865 HEADVNSVCFHPSGLAFATGSED-KT--ARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD 1931 (2004)
Q Consensus 1865 h~s~ItsIafSPdg~~LaSgS~D-Gt--IrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD 1931 (2004)
....-..-.|+|||++++..+.. |. |.+.|+.++.....+ ........-.|.++|+.+...+..
T Consensus 324 ~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l---t~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 324 SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL---TSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc---cccccCCCCCcCCCCceEEEeccC
Confidence 33333377899999998877753 44 666666655543332 112223445678888877655443
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.03 Score=71.63 Aligned_cols=95 Identities=18% Similarity=0.263 Sum_probs=80.6
Q ss_pred cCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeE-EEEEeCCCCEEEEEECCCeEEEEEccCCceeE
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVN-SVCFHPSGLAFATGSEDKTARLFDIRADQQIA 1902 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~It-sIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~ 1902 (2004)
...+.-+.|+|.-..+|.+..+|.|.++.+. .+.+.++.-++..++ +++|.|||+.+++|-.||+|++.|..++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457889999999999999999999999988 777888887777777 99999999999999999999999999998887
Q ss_pred EEcCCCCCCCeEEEEEcC
Q psy8748 1903 TYLPPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSP 1920 (2004)
.+.. .....|.++-|++
T Consensus 99 ~~~~-s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLF-SVETDISKGIWDR 115 (665)
T ss_pred cccc-ccccchheeeccc
Confidence 7422 2335677777763
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.85 E-value=5.2 Score=50.86 Aligned_cols=240 Identities=15% Similarity=0.159 Sum_probs=126.9
Q ss_pred eEEEEEecCCCEEEEe-ecC----CeEEEEEcCCCCCCCcceEEE-EEecCccceeeeEEeCCC-cEEEeec--------
Q psy8748 1737 VMSVAFAQSGNFVACG-GMD----NMCTVYDLNNRDSTGAAKVIR-ELLGYEGFLSSCRFIDDT-TLLTGSG-------- 1801 (2004)
Q Consensus 1737 ItsLafSPdg~~LaSG-S~D----GtIrVWDl~t~~~~~~~k~i~-sl~gh~~~Vssvafsdd~-~LlSgS~-------- 1801 (2004)
+....++|+|++++.+ +.. ..++++|+.++. ... .+.. .....+.|.+++ .++....
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~------~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK------FLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE------EEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc------CcCCcccc--cccceEEEeCCCCEEEEEEeCccccccc
Confidence 4467889999988765 333 469999998762 221 1111 112237888663 3443332
Q ss_pred ---CCeEEEEECCCCcee-EEeeccccCC--eEEEEECCCCCEEEEEECC----CeEEEEECCCC----eEEEEEecCCC
Q psy8748 1802 ---DMKIVTWNLETGQRI-HEVAQAHIGD--VVSISLSPDGQYFVTGSVD----KSCKLWDFREK----KCVQTFFGHEA 1867 (2004)
Q Consensus 1802 ---DGtI~IWDl~tg~~i-~~il~~h~~~--ItsLafSPdg~~LaSGS~D----GsIrIWDlrs~----k~I~tl~~h~s 1867 (2004)
...|+.|.+.++..- ..++...... ...+..++++++++..... ..+++.|+..+ .....+.....
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 334888888776543 2233333322 5688899999988765433 34888888874 22333333344
Q ss_pred CeEEEEEeCCCCEEEEEE---CCCeEEEEEccCCce---eEEEcCCCCCCCeEEEEEcCCCCEEEE-EeCCC--eEEEEE
Q psy8748 1868 DVNSVCFHPSGLAFATGS---EDKTARLFDIRADQQ---IATYLPPNKNSGFTSCAVSSSGRYIFC-GSDDN--NVHVWD 1938 (2004)
Q Consensus 1868 ~ItsIafSPdg~~LaSgS---~DGtIrIWDLrtgk~---i~t~~~~~~~s~ItsLafSPdG~~LaS-GSsDG--sIrIWD 1938 (2004)
.+....-+..+.+++... .++.|...++..... ...+..+.....+..+. ..+++|+. ...++ .|++++
T Consensus 278 ~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 278 GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEEEEE
Confidence 443333333443444332 245677778776653 22332222222344443 44555554 44454 588999
Q ss_pred CCCCeeeEEEc-cCCCCeEEEEEcCCCCEEEE-E-EC--CCeEEEEECCCCeE
Q psy8748 1939 LLKTTHNGVLS-GHENRVTSISLSPNGMALVT-S-SW--DQFVKVWQESNTIV 1986 (2004)
Q Consensus 1939 L~tge~l~tL~-gHs~~VtsLaFSPDg~~LaS-g-S~--DGtIrIWdlstg~l 1986 (2004)
+..+.....+. .-.+.|..+...++++.+.. . |. -+++.-||+.+++.
T Consensus 356 ~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 356 LDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 98344444443 23445666665565554332 2 22 36899999999864
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.011 Score=45.76 Aligned_cols=37 Identities=43% Similarity=0.654 Sum_probs=33.4
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD 1720 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWD 1720 (2004)
+...+.+|...|+++.|++++.++++++.||.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.01 Score=68.30 Aligned_cols=143 Identities=12% Similarity=0.103 Sum_probs=89.9
Q ss_pred EEEEECCCeEEEEECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEE
Q psy8748 1839 FVTGSVDKSCKLWDFREKKCVQT-FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlrs~k~I~t-l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLa 1917 (2004)
+...+.||.|+-++++..+.... -..+... .....-+..+++|+.+|.|.+|......................+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 34445677887777764332111 1111111 1122235579999999999999986322222221112222222333
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCC-CCeEEEEEcCCCCEEEEE--ECCCeEEEEECCCC
Q psy8748 1918 VSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHE-NRVTSISLSPNGMALVTS--SWDQFVKVWQESNT 1984 (2004)
Q Consensus 1918 fSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs-~~VtsLaFSPDg~~LaSg--S~DGtIrIWdlstg 1984 (2004)
.-.++.+..+++.||.|+.|++.-.+.+.....|. .++.....+..+.+++.+ |.|..++.|++..-
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 33466789999999999999999999888888887 666666666677777777 77888888877653
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.025 Score=43.79 Aligned_cols=39 Identities=36% Similarity=0.570 Sum_probs=34.4
Q ss_pred CeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1942 TTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1942 ge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
+++...+..|...|.++.|++++..+++++.||.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.35 Score=63.60 Aligned_cols=188 Identities=13% Similarity=0.196 Sum_probs=94.2
Q ss_pred eEEEEECCCCceeEEeecc-ccCCeEEEEECCCCCEEEEEECCC-----eEEEEECCCCeEEEE--EecCCCCeEEEEEe
Q psy8748 1804 KIVTWNLETGQRIHEVAQA-HIGDVVSISLSPDGQYFVTGSVDK-----SCKLWDFREKKCVQT--FFGHEADVNSVCFH 1875 (2004)
Q Consensus 1804 tI~IWDl~tg~~i~~il~~-h~~~ItsLafSPdg~~LaSGS~DG-----sIrIWDlrs~k~I~t--l~~h~s~ItsIafS 1875 (2004)
.+..||..+++........ .......+.+ +++.++.||.++ .+..||..+++-... +...... .+++ .
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~ 387 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-N 387 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-E
Confidence 4677887766543211000 1111222222 567777787653 477888776542211 1111111 1222 2
Q ss_pred CCCCEEEEEECC------CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEECCC
Q psy8748 1876 PSGLAFATGSED------KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD--------NNVHVWDLLK 1941 (2004)
Q Consensus 1876 Pdg~~LaSgS~D------GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD--------GsIrIWDL~t 1941 (2004)
-++..++.||.+ +.+..||..+++-...-..+...... + +...++..++.|+.+ ..+.+||..+
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 356666667632 35888998765433221111111111 2 223356677777643 2388899876
Q ss_pred CeeeEE--EccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEEeecCCCCcc
Q psy8748 1942 TTHNGV--LSGHENRVTSISLSPNGMALVTSSWD-----QFVKVWQESNTIVWKVLKVYNLEKKTI 2000 (2004)
Q Consensus 1942 ge~l~t--L~gHs~~VtsLaFSPDg~~LaSgS~D-----GtIrIWdlstg~l~k~Ik~~~~h~~~V 2000 (2004)
.+-... ..........+.+ ++..++.||.+ +.|.+||..++ .|..+..+....+.|
T Consensus 466 ~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 466 NKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN-TWTLFCKFPKVIGSL 528 (534)
T ss_pred CceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC-EEEecCCCcccccce
Confidence 543221 1111111122222 67777777764 47899999876 488777655544444
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.56 Score=62.35 Aligned_cols=228 Identities=15% Similarity=0.185 Sum_probs=119.7
Q ss_pred CCCCEEEEEeCCC------eEEEEECCCCceEEEeeCC-CCceEEEEEecCCCEEEEeecC-C-----eEEEEEcCCCCC
Q psy8748 1702 GDSRHCVSGSLDG------KLIIWDTWTGNKTQVIPLR-SAWVMSVAFAQSGNFVACGGMD-N-----MCTVYDLNNRDS 1768 (2004)
Q Consensus 1702 PDG~~LASGS~DG------tIrVWDl~Tgk~l~ti~~H-t~~ItsLafSPdg~~LaSGS~D-G-----tIrVWDl~t~~~ 1768 (2004)
..+..++.||.++ .+..+|..++......... ...-.+++.. ++...++||.| | .+..||.....
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~- 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ- 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-
Confidence 3455667777663 5778888777544433222 2223334443 56788889888 3 45666665543
Q ss_pred CCcceEEEEEecCccceeeeEEeCCCcEEEeecCCe-----EEEEECCCCceeEEeeccccCCeEEEEE-CCCCCEEEEE
Q psy8748 1769 TGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMK-----IVTWNLETGQRIHEVAQAHIGDVVSISL-SPDGQYFVTG 1842 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGt-----I~IWDl~tg~~i~~il~~h~~~ItsLaf-SPdg~~LaSG 1842 (2004)
+........ ...-..++...+...++|+.||. |-.||..+.+....- .......+... .-+|...++|
T Consensus 361 ---W~~~a~M~~-~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 361 ---WTPVAPMNT-KRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred ---eeccCCccC-ccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC--CCCcceeeeEEEEECCEEEEEc
Confidence 111111111 11222344446667888888864 777888776543211 11111122111 2257788888
Q ss_pred ECCC------eEEEEECCCCeEEE--EEecCCCCeEEEEEeCCCCEEEEEECCCe-----EEEEEccCCceeEEEcCCCC
Q psy8748 1843 SVDK------SCKLWDFREKKCVQ--TFFGHEADVNSVCFHPSGLAFATGSEDKT-----ARLFDIRADQQIATYLPPNK 1909 (2004)
Q Consensus 1843 S~DG------sIrIWDlrs~k~I~--tl~~h~s~ItsIafSPdg~~LaSgS~DGt-----IrIWDLrtgk~i~t~~~~~~ 1909 (2004)
|.+| ++..||..++.-.. .+....... +++. -++...+.||.||. |..||..+.+-...-.....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP 512 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc
Confidence 8665 47788877654322 111111111 1222 25667888887763 77788876655443222222
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCC
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGSDDN-----NVHVWDLLK 1941 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGSsDG-----sIrIWDL~t 1941 (2004)
...+..+. -++...++|+.|| +|..||..+
T Consensus 513 rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 513 RSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cccccEEE--ECCEEEEEecccCccccceeEEcCCCC
Confidence 22222222 2567778888776 355665543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.56 E-value=3.8 Score=51.32 Aligned_cols=263 Identities=16% Similarity=0.156 Sum_probs=134.3
Q ss_pred eCCCCEEEEEeC---------CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1701 SGDSRHCVSGSL---------DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1701 SPDG~~LASGS~---------DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
|||+++++.... .+.+.|||+.+++....... ...+....|+|+|+.++... ++.|.+++..++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~---- 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ---- 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE----
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCC----
Confidence 688888776422 46799999999766554333 56788999999999998886 5679998875531
Q ss_pred ceEEEEEec-------C---------ccceeeeEEeCCCc-EEE-eecCCeEEEEECCCCceeEEeecccc---CCeEEE
Q psy8748 1772 AKVIRELLG-------Y---------EGFLSSCRFIDDTT-LLT-GSGDMKIVTWNLETGQRIHEVAQAHI---GDVVSI 1830 (2004)
Q Consensus 1772 ~k~i~sl~g-------h---------~~~Vssvafsdd~~-LlS-gS~DGtI~IWDl~tg~~i~~il~~h~---~~ItsL 1830 (2004)
....+..+ . -+.-..+.|++++. ++. ...+..|..+.+.. ..... ..+..+
T Consensus 75 -~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~-------~~~~~~~yp~~~~~ 146 (353)
T PF00930_consen 75 -ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD-------YSPPDSQYPEVESI 146 (353)
T ss_dssp -EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE-------ESSSTESS-EEEEE
T ss_pred -eEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeec-------cCCccccCCccccc
Confidence 11111111 0 11224556665543 222 22233333322110 00111 123444
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeEEE-E-E---ecCCCCeEEEEEeCCCCEEEEE--ECCC---eEEEEEccCCce
Q psy8748 1831 SLSPDGQYFVTGSVDKSCKLWDFREKKCVQ-T-F---FGHEADVNSVCFHPSGLAFATG--SEDK---TARLFDIRADQQ 1900 (2004)
Q Consensus 1831 afSPdg~~LaSGS~DGsIrIWDlrs~k~I~-t-l---~~h~s~ItsIafSPdg~~LaSg--S~DG---tIrIWDLrtgk~ 1900 (2004)
.+-.-|.--.. -.+.++|+.+++... . . ......+..+.|.+++..|+.. ..+. .+.++|..++..
T Consensus 147 ~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 147 RYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET 222 (353)
T ss_dssp E--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred ccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence 44322322211 147778888776422 1 1 2345568899999999844333 3332 377778877665
Q ss_pred eEEEc--CCCCCCCeEEEEEc-CCC-CEEEEEeCCCe--EEEEECCCCeeeEEEccCCCCeEE-EEEcCCCCEEE-EEEC
Q psy8748 1901 IATYL--PPNKNSGFTSCAVS-SSG-RYIFCGSDDNN--VHVWDLLKTTHNGVLSGHENRVTS-ISLSPNGMALV-TSSW 1972 (2004)
Q Consensus 1901 i~t~~--~~~~~s~ItsLafS-PdG-~~LaSGSsDGs--IrIWDL~tge~l~tL~gHs~~Vts-LaFSPDg~~La-SgS~ 1972 (2004)
..... ...--.......+. +++ .++.....+|- |++++...+. ...+....-.|+. +.|+++++.|+ ++..
T Consensus 223 ~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 223 RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred eEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecC
Confidence 43331 11111122344544 554 45555666775 5556665555 3455555566755 67788777654 4444
Q ss_pred C--C--eEEEEECC
Q psy8748 1973 D--Q--FVKVWQES 1982 (2004)
Q Consensus 1973 D--G--tIrIWdls 1982 (2004)
+ + .|+.-+++
T Consensus 302 ~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 302 DNPGERHLYRVSLD 315 (353)
T ss_dssp GGTTSBEEEEEETT
T ss_pred CCCCceEEEEEEeC
Confidence 2 2 44445555
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.14 Score=64.78 Aligned_cols=138 Identities=17% Similarity=0.284 Sum_probs=95.1
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCE-------EEEEECCCeEEEEEccCCce--eE--EEcCCC
Q psy8748 1840 VTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLA-------FATGSEDKTARLFDIRADQQ--IA--TYLPPN 1908 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~-------LaSgS~DGtIrIWDLrtgk~--i~--t~~~~~ 1908 (2004)
..+.....++-.|+..|+.+..+.-+.. |+-+.+.|+.+. -+.|-.|..|.-||.+-... +. ....-.
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 3444556788899999999998877666 777777776432 34566788999999874332 11 111111
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1909 KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTH-NGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1909 ~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~-l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
......|.+-..+| +|++|+.+|.|++||- .+.. ...+.+-..+|..|..+.+|++|+..+ +..+.+-+.
T Consensus 429 ~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 429 TKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred cccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 22345566655554 7899999999999997 4443 345677889999999999999887766 455555554
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.40 E-value=3 Score=50.17 Aligned_cols=183 Identities=13% Similarity=0.104 Sum_probs=114.8
Q ss_pred ceeeeEEeCCCc-EEEeecCC--eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEE
Q psy8748 1784 FLSSCRFIDDTT-LLTGSGDM--KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1784 ~Vssvafsdd~~-LlSgS~DG--tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~ 1860 (2004)
....+.|.+++. +-+.+.-| .|+.+|+.+++......-....---.++... ++.....-.+|...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEE
Confidence 344566644444 45555544 7999999999877555333333333444442 3334444568899999999999888
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCC---CeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy8748 1861 TFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNS---GFTSCAVSSSGRYIFCGSDDNNVHVW 1937 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s---~ItsLafSPdG~~LaSGSsDGsIrIW 1937 (2004)
++.- .+.-+.++ .++..++.+....+++++|..+.+....+....... .+.-+.+- +|...|-.-....|...
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 8754 45667777 456677777777889999998887776664433322 34455664 67666666667789999
Q ss_pred ECCCCeeeEEEcc------------C---CCCeEEEEEcCCCCEEEEEE
Q psy8748 1938 DLLKTTHNGVLSG------------H---ENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1938 DL~tge~l~tL~g------------H---s~~VtsLaFSPDg~~LaSgS 1971 (2004)
|..+|++...+.. + .+-.+.||++|....+...|
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 9999999887631 1 34579999998776665555
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.13 Score=64.83 Aligned_cols=141 Identities=14% Similarity=0.130 Sum_probs=102.3
Q ss_pred EEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCC-------EEEEeecCCeEEEEEcCCCCCCCcceEEEEEe
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN-------FVACGGMDNMCTVYDLNNRDSTGAAKVIRELL 1779 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~-------~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~ 1779 (2004)
+.+++....++-.|++.|+.+...+.+.. |.-+.+.|+.+ .-+.|-.+..|.-||.+-... ..+....
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~----~kl~~~q 423 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK----NKLAVVQ 423 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc----ceeeeee
Confidence 33455556788889999999999988877 77777777643 224566677788898874321 0111111
Q ss_pred ----cCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECC
Q psy8748 1780 ----GYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR 1854 (2004)
Q Consensus 1780 ----gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlr 1854 (2004)
.......|.+-..++++++|+.+|.|++||- .+....+.+.+...+|..+..+.+|++++..+ +..+.+.++.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 2234556667678899999999999999998 66666677788899999999999999887665 5677777653
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.34 E-value=3.2 Score=51.18 Aligned_cols=220 Identities=13% Similarity=0.118 Sum_probs=122.7
Q ss_pred EEEeCCCCE-EEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEE
Q psy8748 1698 VHYSGDSRH-CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIR 1776 (2004)
Q Consensus 1698 LaFSPDG~~-LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~ 1776 (2004)
-.|.++... +.+--..+.|.-|+..+++... +.. .+.+.++..-..+..|+++. .| +.+++.+.+.. .....
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~-p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~---~t~~~ 102 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPS-PGGFSSGALIDAGGRLIACE-HG-VRLLDPDTGGK---ITLLA 102 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EEC-CCCcccceeecCCCeEEEEc-cc-cEEEeccCCce---eEEec
Confidence 356666663 4455567888889887664332 222 22334444444455555443 22 56666643321 01111
Q ss_pred EEe-cC-ccceeeeEEeCCCcEEEeecC------------CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1777 ELL-GY-EGFLSSCRFIDDTTLLTGSGD------------MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1777 sl~-gh-~~~Vssvafsdd~~LlSgS~D------------GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
... +. ..........+++.+..++.. |.|+.+|. .+... +....+-..-..++|+||++.++.+
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~-~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVV-RLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEE-EeecCcEEecCceEECCCCCEEEEE
Confidence 111 11 122333444445555555444 33444454 33333 3444445556789999999888877
Q ss_pred ECC-CeEEEEECCC--C----eE-EEEEecCCCCeEEEEEeCCCCEEEEEECCC-eEEEEEccCCceeEEEcCCCCCCCe
Q psy8748 1843 SVD-KSCKLWDFRE--K----KC-VQTFFGHEADVNSVCFHPSGLAFATGSEDK-TARLFDIRADQQIATYLPPNKNSGF 1913 (2004)
Q Consensus 1843 S~D-GsIrIWDlrs--~----k~-I~tl~~h~s~ItsIafSPdg~~LaSgS~DG-tIrIWDLrtgk~i~t~~~~~~~s~I 1913 (2004)
... +.|+-|++.. + +. ...+....+..-.++...+|.+.+++..+| .|.+|+.. ++.+..+..+. ..+
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~ 257 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--KRP 257 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--CCC
Confidence 654 7788887752 1 11 122223445666788888898776555554 89999998 88888886654 446
Q ss_pred EEEEEcC-CCCEEEEEe
Q psy8748 1914 TSCAVSS-SGRYIFCGS 1929 (2004)
Q Consensus 1914 tsLafSP-dG~~LaSGS 1929 (2004)
++++|-- +.+.|++.+
T Consensus 258 t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 258 TNPAFGGPDLNTLYITS 274 (307)
T ss_pred ccceEeCCCcCEEEEEe
Confidence 6777643 445555443
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.072 Score=68.41 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=68.6
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceE-EEEEecCCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVM-SVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~It-sLafSPdg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
-.-.|.-+.|+|.-..+|++..+|.|.+..+. .+.+.+++.|+..++ +++|.|||+.+++|-.||+|++.|++++.
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 34568889999999999999999999999987 888889998888787 99999999999999999999999998764
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=8.5 Score=52.66 Aligned_cols=239 Identities=9% Similarity=-0.005 Sum_probs=118.0
Q ss_pred cceeEEEEeCCCCEEEEEeC-----CCeEEEEECCCCceEEE-eeCCCCceEEEEEecCCCEEEEeecC------CeEEE
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSL-----DGKLIIWDTWTGNKTQV-IPLRSAWVMSVAFAQSGNFVACGGMD------NMCTV 1760 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~-----DGtIrVWDl~Tgk~l~t-i~~Ht~~ItsLafSPdg~~LaSGS~D------GtIrV 1760 (2004)
-.+..+.|||||++|+.+.+ ...|++-|+.+|..+.. +..- . ..++|.+|++.|+.+..+ ..|..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34777899999998886533 24588999988864322 2221 1 468999999877665442 35666
Q ss_pred EEcCCCCCCCcceEEEEEecCcccee-eeEEe-CCCcEEEee---cCCeEEEEECC--CCceeEEeeccccCCeEEEEEC
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLS-SCRFI-DDTTLLTGS---GDMKIVTWNLE--TGQRIHEVAQAHIGDVVSISLS 1833 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vs-svafs-dd~~LlSgS---~DGtI~IWDl~--tg~~i~~il~~h~~~ItsLafS 1833 (2004)
+++.++.. .-..+.. ....... ..... ++..++..+ .++.+.+|+.. .+... .......+....+. +
T Consensus 204 h~lgt~~~--~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~ 277 (686)
T PRK10115 204 HTIGTPAS--QDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPF-VFLPRRKDHEYSLD-H 277 (686)
T ss_pred EECCCChh--HCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCce-EEEECCCCCEEEEE-e
Confidence 67665421 1122222 1112122 22223 444444333 34578888853 33322 11111222222222 3
Q ss_pred CCCCEEEEEECCC----eEEEEECCCCeEEEEEecC-C-CCeEEEEEeCCCCEEEEEECCCeEEEEEccC-CceeEEEcC
Q psy8748 1834 PDGQYFVTGSVDK----SCKLWDFREKKCVQTFFGH-E-ADVNSVCFHPSGLAFATGSEDKTARLFDIRA-DQQIATYLP 1906 (2004)
Q Consensus 1834 Pdg~~LaSGS~DG----sIrIWDlrs~k~I~tl~~h-~-s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt-gk~i~t~~~ 1906 (2004)
.. ..++..+..+ .|...++........+..+ . ..|..+.+. .+..+++...+|.-+++-+.. +.....+..
T Consensus 278 ~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~ 355 (686)
T PRK10115 278 YQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAF 355 (686)
T ss_pred CC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecC
Confidence 23 3444443322 3444455422222333344 2 367888887 334566666677655554432 223333321
Q ss_pred CCCCCCeEEEEEc--CCCC-EEEEEeC---CCeEEEEECCCCe
Q psy8748 1907 PNKNSGFTSCAVS--SSGR-YIFCGSD---DNNVHVWDLLKTT 1943 (2004)
Q Consensus 1907 ~~~~s~ItsLafS--PdG~-~LaSGSs---DGsIrIWDL~tge 1943 (2004)
.. ...+..+.++ +++. ++++.++ -+.++.+|..+++
T Consensus 356 ~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 356 DD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 11 1223333344 3444 4444333 3678999987764
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.76 Score=48.27 Aligned_cols=101 Identities=24% Similarity=0.294 Sum_probs=68.0
Q ss_pred eEEEEECC---CC-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeE
Q psy8748 1827 VVSISLSP---DG-QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIA 1902 (2004)
Q Consensus 1827 ItsLafSP---dg-~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~ 1902 (2004)
|+++++.. +| +.|++|+.|..|++|+-. ..+..+.. .+.|.+++-... ..|+.+..+|+|-+|+- .....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 55666544 32 589999999999999843 55566643 566777777666 57899999999999985 33444
Q ss_pred EEcCCCCCCCeEEEEEcC-C--C-CEEEEEeCCCeEEE
Q psy8748 1903 TYLPPNKNSGFTSCAVSS-S--G-RYIFCGSDDNNVHV 1936 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSP-d--G-~~LaSGSsDGsIrI 1936 (2004)
...... .++++++.. + | .-|++|-.+|.|-+
T Consensus 76 RiKSK~---~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKSKN---QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeccCC---CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 443222 345554433 3 2 36888988998753
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=94.87 E-value=16 Score=46.36 Aligned_cols=256 Identities=14% Similarity=0.109 Sum_probs=118.2
Q ss_pred ECCCCceEEEeeCCCCce-----EEEEEecCCCEEEEe-ecCCe--EEEEEcCCCCCCCcceEEEEEecCc--cceeeeE
Q psy8748 1720 DTWTGNKTQVIPLRSAWV-----MSVAFAQSGNFVACG-GMDNM--CTVYDLNNRDSTGAAKVIRELLGYE--GFLSSCR 1789 (2004)
Q Consensus 1720 Dl~Tgk~l~ti~~Ht~~I-----tsLafSPdg~~LaSG-S~DGt--IrVWDl~t~~~~~~~k~i~sl~gh~--~~Vssva 1789 (2004)
|..||..+..+......- +.=+|.++|+.|+.+ ..+|. +.+.|+.++ + +..+.... .....+.
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~------~-i~QLTdg~g~~~~g~~~ 88 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATG------E-ITQLTDGPGDNTFGGFL 88 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-------E-EEE---SS-B-TTT-EE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccC------E-EEECccCCCCCccceEE
Confidence 667777776665433322 223677888755554 44554 555555543 2 22222221 1222222
Q ss_pred EeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEE--CCCCCEEEEEEC----------------------C
Q psy8748 1790 FIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL--SPDGQYFVTGSV----------------------D 1845 (2004)
Q Consensus 1790 fsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf--SPdg~~LaSGS~----------------------D 1845 (2004)
..+++.++-...+..|+-.|+.+.+.. .+.......+-...| +.++..++..-. .
T Consensus 89 s~~~~~~~Yv~~~~~l~~vdL~T~e~~-~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~ 167 (386)
T PF14583_consen 89 SPDDRALYYVKNGRSLRRVDLDTLEER-VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPH 167 (386)
T ss_dssp -TTSSEEEEEETTTEEEEEETTT--EE-EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---
T ss_pred ecCCCeEEEEECCCeEEEEECCcCcEE-EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCC
Confidence 234444555555678888999987653 333333333433444 345555433211 1
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC-----eEEEEEccC-CceeEEEcCCCCCCCeEEEEEc
Q psy8748 1846 KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK-----TARLFDIRA-DQQIATYLPPNKNSGFTSCAVS 1919 (2004)
Q Consensus 1846 GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG-----tIrIWDLrt-gk~i~t~~~~~~~s~ItsLafS 1919 (2004)
..|.-.|+.+|+... +......+..+.|+|....+++=|..| .-+||-+++ +..............+..=-|.
T Consensus 168 ~~i~~idl~tG~~~~-v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 168 CRIFTIDLKTGERKV-VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEEETTT--EEE-EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred ceEEEEECCCCceeE-EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 246667888877543 334567788999999655544443333 135665543 3333333323333445566789
Q ss_pred CCCCEEEEEe-----CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCC----------------eEEE
Q psy8748 1920 SSGRYIFCGS-----DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQ----------------FVKV 1978 (2004)
Q Consensus 1920 PdG~~LaSGS-----sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG----------------tIrI 1978 (2004)
+||..|..-+ .+..|.-+|..+++...... ......+.-++||++++-=|.|. .|++
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~ 324 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYL 324 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEE
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEE
Confidence 9998776432 23457778888876644332 22455666778999876655442 5667
Q ss_pred EECCCCeE
Q psy8748 1979 WQESNTIV 1986 (2004)
Q Consensus 1979 Wdlstg~l 1986 (2004)
+++..+..
T Consensus 325 ~~~~~~~~ 332 (386)
T PF14583_consen 325 FDVEAGRF 332 (386)
T ss_dssp EETTTTEE
T ss_pred eccccCce
Confidence 88887754
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.6 Score=62.21 Aligned_cols=148 Identities=11% Similarity=0.040 Sum_probs=89.5
Q ss_pred CCeEEEEECCCCCEEEEEE------CCC--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---------
Q psy8748 1825 GDVVSISLSPDGQYFVTGS------VDK--SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED--------- 1887 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSGS------~DG--sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D--------- 1887 (2004)
..+.+.+++|+|+.++... .|+ .|.+++.. +.. ..+.. ......-.|+|+|..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999887665 233 56666653 222 22222 2247888999998887777533
Q ss_pred ---CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEE---EECCCCeee----EEE-ccCCCCeE
Q psy8748 1888 ---KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHV---WDLLKTTHN----GVL-SGHENRVT 1956 (2004)
Q Consensus 1888 ---GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrI---WDL~tge~l----~tL-~gHs~~Vt 1956 (2004)
+.+.+.+++.+.... .....|..+.|+|||..++... +|.|++ -....|+.. ..+ .+-...+.
T Consensus 427 ~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 222222333222211 1235699999999999988766 578877 443445411 112 22334468
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1957 SISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1957 sLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
++.|..++.++ .+..++...+|.+.
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEe
Confidence 89999999854 55555555566543
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.85 E-value=2 Score=54.82 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=58.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEE-EEEc-CC----------------CC-EEEEE
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTS-ISLS-PN----------------GM-ALVTS 1970 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~Vts-LaFS-PD----------------g~-~LaSg 1970 (2004)
...+.+++.+|++++.++.+.-|+|.++|+.++..++.++|..+.=.. +... .. .. +++-+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 345788999999999999888899999999999888888765443111 1111 10 11 24456
Q ss_pred ECCCeEEEEECCCCeEEEEEEe
Q psy8748 1971 SWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1971 S~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
-.-|.|.||++..|.....+..
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEe
Confidence 6789999999999865544443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.83 E-value=11 Score=45.59 Aligned_cols=195 Identities=13% Similarity=0.120 Sum_probs=118.0
Q ss_pred eEEEeeC-CCCceEEEEEecCCCEEEEeecCC--eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC
Q psy8748 1726 KTQVIPL-RSAWVMSVAFAQSGNFVACGGMDN--MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD 1802 (2004)
Q Consensus 1726 ~l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DG--tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D 1802 (2004)
.+.+++. ......++.|..+|.++-+.|.-| .|+.+|+.+++. .........-.-..++..++......-.+
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~-----~~~~~l~~~~FgEGit~~~d~l~qLTWk~ 109 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKV-----LQSVPLPPRYFGEGITILGDKLYQLTWKE 109 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSE-----EEEEE-TTT--EEEEEEETTEEEEEESSS
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcE-----EEEEECCccccceeEEEECCEEEEEEecC
Confidence 3444442 345567888878888888888777 788888876531 11222222333445555566556666678
Q ss_pred CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecC--C---CCeEEEEEeCC
Q psy8748 1803 MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH--E---ADVNSVCFHPS 1877 (2004)
Q Consensus 1803 GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h--~---s~ItsIafSPd 1877 (2004)
+...+||..+-+.+.++.. .+.=+.++ .++..|+.+.....++++|..+.+....+.-. . ..++-+.|. +
T Consensus 110 ~~~f~yd~~tl~~~~~~~y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~ 184 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFPY--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N 184 (264)
T ss_dssp SEEEEEETTTTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred CeEEEEccccceEEEEEec--CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence 9999999999888766633 34556676 35777888777788999998887766655422 2 234556665 5
Q ss_pred CCEEEEEECCCeEEEEEccCCceeEEEcC----------C---CCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1878 GLAFATGSEDKTARLFDIRADQQIATYLP----------P---NKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1878 g~~LaSgS~DGtIrIWDLrtgk~i~t~~~----------~---~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
|...+=.-....|...|..+|+....+.. . ....-...++++|.++.+.+.+.
T Consensus 185 G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 185 GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 65555455567788889999988776511 0 11345789999987665554443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.77 E-value=9.8 Score=47.42 Aligned_cols=238 Identities=14% Similarity=0.134 Sum_probs=119.3
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCce---EEEe----eCCCCceEEEEEecC----CCEEEEeecC-------
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK---TQVI----PLRSAWVMSVAFAQS----GNFVACGGMD------- 1755 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~---l~ti----~~Ht~~ItsLafSPd----g~~LaSGS~D------- 1755 (2004)
..++|+|.|||+.+++ ...|.|++++ .++.. +..+ .........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4578999999987665 5699999999 55554 2222 123456899999994 3333333321
Q ss_pred -CeEEEEEcCCCC--CCCcceEEEEEec---CccceeeeEEeCCCcEEEeecC--------------CeEEEEECCCCc-
Q psy8748 1756 -NMCTVYDLNNRD--STGAAKVIRELLG---YEGFLSSCRFIDDTTLLTGSGD--------------MKIVTWNLETGQ- 1814 (2004)
Q Consensus 1756 -GtIrVWDl~t~~--~~~~~k~i~sl~g---h~~~Vssvafsdd~~LlSgS~D--------------GtI~IWDl~tg~- 1814 (2004)
..|.-|...... .......+..... .......+.|.+++.|+++..+ |.|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 244445544331 0111122222222 2344556888877775554332 334444432110
Q ss_pred -----------eeEEeeccccCCeEEEEECCCCCEEEEEE--CCCeEEEEECCCC-------------------------
Q psy8748 1815 -----------RIHEVAQAHIGDVVSISLSPDGQYFVTGS--VDKSCKLWDFREK------------------------- 1856 (2004)
Q Consensus 1815 -----------~i~~il~~h~~~ItsLafSPdg~~LaSGS--~DGsIrIWDlrs~------------------------- 1856 (2004)
....+..++ .....++|+|....|+++. .++.=.|.-+..+
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 000111122 2346789999833344433 2222112111111
Q ss_pred ----eEEEEEecCCCCeEEEEEeC-------CCCEEEEEECCCeEEEEEccCCceeEEE--cCCCCCCCeEEEEEcCCCC
Q psy8748 1857 ----KCVQTFFGHEADVNSVCFHP-------SGLAFATGSEDKTARLFDIRADQQIATY--LPPNKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1857 ----k~I~tl~~h~s~ItsIafSP-------dg~~LaSgS~DGtIrIWDLrtgk~i~t~--~~~~~~s~ItsLafSPdG~ 1923 (2004)
.++..+. +...+..+.|.. .|.+|++.-..+.|....+..+..+... ........+..+++.|||.
T Consensus 240 ~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 1222232 335566777764 3456666655678888888755433221 1133334789999999999
Q ss_pred EEEEEeCCCeEE
Q psy8748 1924 YIFCGSDDNNVH 1935 (2004)
Q Consensus 1924 ~LaSGSsDGsIr 1935 (2004)
+.++-+.+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888888888774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=94.37 E-value=22 Score=45.83 Aligned_cols=272 Identities=13% Similarity=0.042 Sum_probs=146.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceE----EEeeCCCCceEEEEEec-----CCCEEEEeecCCeEEEEEcCCCCCC---C
Q psy8748 1703 DSRHCVSGSLDGKLIIWDTWTGNKT----QVIPLRSAWVMSVAFAQ-----SGNFVACGGMDNMCTVYDLNNRDST---G 1770 (2004)
Q Consensus 1703 DG~~LASGS~DGtIrVWDl~Tgk~l----~ti~~Ht~~ItsLafSP-----dg~~LaSGS~DGtIrVWDl~t~~~~---~ 1770 (2004)
+...+++|+..|.++||+...+... ..-..-..+|..+..-. +...|++ -.-..+.+|.+...... +
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 3458999999999999998554311 11122456788877642 2234444 44567888888432211 1
Q ss_pred cceEEEEEecCccc--e---eeeEEe--C-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1771 AAKVIRELLGYEGF--L---SSCRFI--D-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~--V---ssvafs--d-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
..-.......|.-. . ..-.|. . ...+.+-+.||.+.+|+-+.-... ..+.. .--...+++.+....|+++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~-~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFS-RFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEE-EEcCC-CCCCcCeEEeecCCEEEEe
Confidence 11112222222211 1 111222 1 345888999999999997654322 22111 2223457788888889999
Q ss_pred ECCCeEEEEECCCC--------------------e---EEEEEecCCCCeEEEEE---eCCCCEEEEEECCCeEEEEEcc
Q psy8748 1843 SVDKSCKLWDFREK--------------------K---CVQTFFGHEADVNSVCF---HPSGLAFATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~--------------------k---~I~tl~~h~s~ItsIaf---SPdg~~LaSgS~DGtIrIWDLr 1896 (2004)
+.+..+..|....- + +-.++ .-...+..|.. +.....+++-+ ..++.+.+-
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~-nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~- 269 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSF-NLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD- 269 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEE-ECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-
Confidence 98888888865310 0 01111 11233333333 22333344443 445666664
Q ss_pred CCceeEEEcCCCCCCCeEEEEEc----CCC---CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEE---cCCCCE
Q psy8748 1897 ADQQIATYLPPNKNSGFTSCAVS----SSG---RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISL---SPNGMA 1966 (2004)
Q Consensus 1897 tgk~i~t~~~~~~~s~ItsLafS----PdG---~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF---SPDg~~ 1966 (2004)
+|........... +...+.|. .++ ..+++++.++++.||. ..+.+...+....+| ++.. ..-...
T Consensus 270 ~G~l~~~krLd~~--p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~~~~~~G~ 344 (418)
T PF14727_consen 270 NGSLRFQKRLDYN--PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVANFNGLKGL 344 (418)
T ss_pred CCeEEEEEecCCc--eeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecccCCCCce
Confidence 3444433332221 12222221 122 2588899999999997 344444444333333 3333 334557
Q ss_pred EEEEECCCeEEEEECCCCe
Q psy8748 1967 LVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1967 LaSgS~DGtIrIWdlstg~ 1985 (2004)
|++-+.+|.+.+-=+.+.-
T Consensus 345 IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 345 IVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EEEEcCCCcEEEEEeCCCC
Confidence 8889999999998877653
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.49 Score=64.19 Aligned_cols=99 Identities=17% Similarity=0.341 Sum_probs=75.5
Q ss_pred cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEE
Q psy8748 1795 TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCF 1874 (2004)
Q Consensus 1795 ~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIaf 1874 (2004)
.+++|+..|.+-..|+...-.....-....++|++++|+.+|..++.|-.+|.|.+||...++..+.+..|..+.+++-+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 46778888888888876542211222345678999999999999999999999999999999999988887777666544
Q ss_pred ---eCCCCEEEEEECCCeEEEEEc
Q psy8748 1875 ---HPSGLAFATGSEDKTARLFDI 1895 (2004)
Q Consensus 1875 ---SPdg~~LaSgS~DGtIrIWDL 1895 (2004)
..++..++++...|. +|.+
T Consensus 181 v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEeCCCcEEEEccCCCc--eEEE
Confidence 445667888877776 5654
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.12 E-value=19 Score=44.14 Aligned_cols=225 Identities=15% Similarity=0.190 Sum_probs=130.5
Q ss_pred eEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC-cceEEEEEec-----CccceeeeEEeCC-------------CcEE
Q psy8748 1737 VMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG-AAKVIRELLG-----YEGFLSSCRFIDD-------------TTLL 1797 (2004)
Q Consensus 1737 ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~-~~k~i~sl~g-----h~~~Vssvafsdd-------------~~Ll 1797 (2004)
-+.|+++|.+.+.++....+...+||........ .......+.. .....+.+.|... ..++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4688999999999988888999999986221111 1122223321 1234556666522 2368
Q ss_pred EeecCCeEEEEECCCCce----eEEeec-cccCCe-EEEEECC--CCCEEEEE-ECCCeEEEEECCCCeEEE--EEecC-
Q psy8748 1798 TGSGDMKIVTWNLETGQR----IHEVAQ-AHIGDV-VSISLSP--DGQYFVTG-SVDKSCKLWDFREKKCVQ--TFFGH- 1865 (2004)
Q Consensus 1798 SgS~DGtI~IWDl~tg~~----i~~il~-~h~~~I-tsLafSP--dg~~LaSG-S~DGsIrIWDlrs~k~I~--tl~~h- 1865 (2004)
.+++||+|.-|...-+.. ...... ...+.| ..+++.. .+.+|+.+ -..|+|.+||-.-.+... .+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 899999999998643322 111111 112333 3455543 34555544 467889999854322110 01000
Q ss_pred ---C-CC--e---------EEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC------CCCE
Q psy8748 1866 ---E-AD--V---------NSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS------SGRY 1924 (2004)
Q Consensus 1866 ---~-s~--I---------tsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP------dG~~ 1924 (2004)
. .+ | +-..-.+++..=+.|..-|.|-+||.. ++.++++.....-..-+.++..| .|.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0 00 1 111111222222233345789999986 77888886555555566777766 4666
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEccCCC------CeEEEEEcC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGHEN------RVTSISLSP 1962 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~gHs~------~VtsLaFSP 1962 (2004)
|+---.||+|..||..+++.+..+....+ .++.++|..
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 77666799999999999998888865443 357788864
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.13 Score=69.20 Aligned_cols=103 Identities=20% Similarity=0.313 Sum_probs=79.2
Q ss_pred CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeE
Q psy8748 1877 SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVT 1956 (2004)
Q Consensus 1877 dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~Vt 1956 (2004)
.+..++.|+..|.+-..|+...-. .-.......++|++++|+.+|+.++.|-.+|.|.+||+..++..+.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc-hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 455788899999999999875311 1223345568899999999999999999999999999999999999887777766
Q ss_pred EEEE---cCCCCEEEEEECCCeEEEEECC
Q psy8748 1957 SISL---SPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1957 sLaF---SPDg~~LaSgS~DGtIrIWdls 1982 (2004)
++-+ ..++..+.++..-|. +|++.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 5544 456667788777775 66654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.98 E-value=5.5 Score=48.28 Aligned_cols=172 Identities=15% Similarity=0.213 Sum_probs=109.4
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCC-CceEEEEEecCCCEEEEeecCCeEEEEEcCCC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS-AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht-~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
+.|-+..|.++.|+|+.+.|++..+...-.||=..+|+.+++++... ...-.|.|..+|++.++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 34555669999999999999998888888888888999999886421 22456788878888887777888888777543
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK 1846 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG 1846 (2004)
....... +-.|.+ ............++|+|.+..|+++-+..
T Consensus 161 t~~~~~~----------------------------~~~i~L----------~~~~k~N~GfEGlA~d~~~~~l~~aKEr~ 202 (316)
T COG3204 161 TTVISAK----------------------------VQKIPL----------GTTNKKNKGFEGLAWDPVDHRLFVAKERN 202 (316)
T ss_pred ccEEecc----------------------------ceEEec----------cccCCCCcCceeeecCCCCceEEEEEccC
Confidence 1000000 000110 00011134567889999888888888777
Q ss_pred eEEEEECCCCeE---EEEEecC-------CCCeEEEEEeC-CCCEEEEEECCCeEEEEEccC
Q psy8748 1847 SCKLWDFREKKC---VQTFFGH-------EADVNSVCFHP-SGLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1847 sIrIWDlrs~k~---I~tl~~h-------~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrt 1897 (2004)
-+.||....... +.....+ -..|.++.|++ .+..++-+.+++.+.-.|...
T Consensus 203 P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 203 PIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 777776653321 1111111 12466778887 455566666777777777653
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=26 Score=44.99 Aligned_cols=148 Identities=9% Similarity=0.045 Sum_probs=83.8
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc-----ee
Q psy8748 1827 VVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ-----QI 1901 (2004)
Q Consensus 1827 ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk-----~i 1901 (2004)
...+...+++.+++++.....++-||-....-...-......+.++.+.+++..++++ .+|.+.. ....+. ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence 4445667788777776544333344432211011222345678899999999877766 4665443 333343 12
Q ss_pred EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc---cCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q psy8748 1902 ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS---GHENRVTSISLSPNGMALVTSSWDQFVKV 1978 (2004)
Q Consensus 1902 ~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~---gHs~~VtsLaFSPDg~~LaSgS~DGtIrI 1978 (2004)
...........+..+.+.+++..+++| ..|.+.... ..|+.-.... .-......+.|.++++.+++ |.+|.|.-
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~ 395 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLR 395 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEE
Confidence 222212223458889999888776665 677666553 3443322222 23456889999877665554 55787655
Q ss_pred E
Q psy8748 1979 W 1979 (2004)
Q Consensus 1979 W 1979 (2004)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 4
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=15 Score=45.81 Aligned_cols=121 Identities=10% Similarity=0.001 Sum_probs=72.6
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1866 EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
...+.++.+.+++.+++++ ..|.+..- .+.+..............+..+.+.++++.+++| ..|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4568899999988766655 45654432 1222221122223344678899999999987776 5676654333333332
Q ss_pred EEEcc----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1946 GVLSG----HENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1946 ~tL~g----Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
..... ....+.++.+.+++..+ .++.+|.|. ...+.++.|+.++
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~-~S~d~G~tW~~~~ 296 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLL-VSKDGGKTWEKDP 296 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEE-EEcCCCeEE-EeCCCCCCCeECC
Confidence 22211 22457889999887754 455677554 5677777787654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.88 E-value=2.9 Score=50.09 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=94.8
Q ss_pred CeEEEEECCCCCEEEEEE---CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE-ccCCcee
Q psy8748 1826 DVVSISLSPDGQYFVTGS---VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD-IRADQQI 1901 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSGS---~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWD-Lrtgk~i 1901 (2004)
.+.+.+++++++.++... ....++++..... ..... ....+..-.|++++...++...++..+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999877665 3334666654332 22221 233777889999987766666666666663 3333332
Q ss_pred E-EEcCCCCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECC---CC------eeeEEEccCCCCeEEEEEcCCCCEEE
Q psy8748 1902 A-TYLPPNKNSGFTSCAVSSSGRYIFCGS---DDNNVHVWDLL---KT------THNGVLSGHENRVTSISLSPNGMALV 1968 (2004)
Q Consensus 1902 ~-t~~~~~~~s~ItsLafSPdG~~LaSGS---sDGsIrIWDL~---tg------e~l~tL~gHs~~VtsLaFSPDg~~La 1968 (2004)
. ..........|+.+.++|||..++... .++.|.+--+. .+ ............+++++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2 222222222799999999999888765 35777776543 22 11122223356899999999998877
Q ss_pred EEECCC-eEEE-EECCC
Q psy8748 1969 TSSWDQ-FVKV-WQESN 1983 (2004)
Q Consensus 1969 SgS~DG-tIrI-Wdlst 1983 (2004)
.+...+ .+.. .....
T Consensus 182 ~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 182 LGRSAGGPVVRLVSVDG 198 (253)
T ss_pred EeCCCCCceeEEEEccC
Confidence 765543 2333 44443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.8 Score=51.81 Aligned_cols=163 Identities=17% Similarity=0.186 Sum_probs=102.9
Q ss_pred EECCCCCEEEEEECC-----CeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEEC------------------
Q psy8748 1831 SLSPDGQYFVTGSVD-----KSCKLWDFREK-KCVQTFFGHEADVNSVCFHPSGLAFATGSE------------------ 1886 (2004)
Q Consensus 1831 afSPdg~~LaSGS~D-----GsIrIWDlrs~-k~I~tl~~h~s~ItsIafSPdg~~LaSgS~------------------ 1886 (2004)
.|+|||.+|+..-.| |.|-|||.+.+ +.+..+..|.-....+.|.+||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 689999999886544 68999999854 446677788888889999999999887642
Q ss_pred CCeEEEEEccCCceeEEEcCC--CCCCCeEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCeeeEEEcc-------CC
Q psy8748 1887 DKTARLFDIRADQQIATYLPP--NKNSGFTSCAVSSSGRYIFCGSDDNN-----VHVWDLLKTTHNGVLSG-------HE 1952 (2004)
Q Consensus 1887 DGtIrIWDLrtgk~i~t~~~~--~~~s~ItsLafSPdG~~LaSGSsDGs-----IrIWDL~tge~l~tL~g-------Hs 1952 (2004)
.-.+.+.|..+|..+.+...+ .+.-.+..++..+||..++.+-..|. -.+=-...++.+.-+.. -.
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a 279 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA 279 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence 012344454555555544433 34456778888888877665543331 11111223444433321 23
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEEee
Q psy8748 1953 NRVTSISLSPNGMALVTSS-WDQFVKVWQESNTIVWKVLKVY 1993 (2004)
Q Consensus 1953 ~~VtsLaFSPDg~~LaSgS-~DGtIrIWdlstg~l~k~Ik~~ 1993 (2004)
..|-+|+.+.+..+++..+ ..+...+||..+|.........
T Consensus 280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~ 321 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP 321 (366)
T ss_pred hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc
Confidence 4577888876555555444 4556788999999766554433
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=93.70 E-value=2 Score=45.20 Aligned_cols=100 Identities=13% Similarity=0.214 Sum_probs=68.7
Q ss_pred eEEEEEec-CC---CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCC
Q psy8748 1737 VMSVAFAQ-SG---NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLET 1812 (2004)
Q Consensus 1737 ItsLafSP-dg---~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~t 1812 (2004)
|+++++.. ++ +.|++|+.|..|++|+-+. .+... .....+..+.....+.|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--------~~~Ei-~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--------IVAEI-TETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--------EEEEE-ecccceEEEEEcCCCEEEEEecCCEEEEEeCcc
Confidence 66777654 22 5899999999999998542 22332 345667777777788999999999999998643
Q ss_pred CceeEEeeccccCCeEEEEECC-C--C-CEEEEEECCCeEE
Q psy8748 1813 GQRIHEVAQAHIGDVVSISLSP-D--G-QYFVTGSVDKSCK 1849 (2004)
Q Consensus 1813 g~~i~~il~~h~~~ItsLafSP-d--g-~~LaSGS~DGsIr 1849 (2004)
.+.++. .+..++++++.. + | ..|++|-.+|.|-
T Consensus 73 --RlWRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 --RLWRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --eeeeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333332 233466766654 2 2 2688888888764
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.63 E-value=6.5 Score=47.69 Aligned_cols=164 Identities=15% Similarity=0.188 Sum_probs=113.8
Q ss_pred ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecC-CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc
Q psy8748 1821 QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH-EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ 1899 (2004)
Q Consensus 1821 ~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h-~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk 1899 (2004)
.+....+.++.|+|+.+.|++....+.-.+|=..+|+.++++.-. -...-.|.+..+|.++++--.++.+.++.+..+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344556999999999999988888877777766788888877422 2345567888888888887788888888776553
Q ss_pred eeEEE-------cCCCC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee---EEEccCC-------CCeEEEEEc
Q psy8748 1900 QIATY-------LPPNK-NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN---GVLSGHE-------NRVTSISLS 1961 (2004)
Q Consensus 1900 ~i~t~-------~~~~~-~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l---~tL~gHs-------~~VtsLaFS 1961 (2004)
..... ....+ +.+.-.++|+|.++.++.+-+-.-+.||.+..+... .....+. ..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 22211 11122 567889999999998888888877888776533211 1111121 246778887
Q ss_pred C-CCCEEEEEECCCeEEEEECCCC
Q psy8748 1962 P-NGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1962 P-Dg~~LaSgS~DGtIrIWdlstg 1984 (2004)
+ .+..++-+.+++.+.-.+..++
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCCC
Confidence 6 5667777778888888888775
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.44 E-value=7.8 Score=46.70 Aligned_cols=232 Identities=11% Similarity=0.114 Sum_probs=130.0
Q ss_pred EEEEeCCCC-EEEEEeCCCe-EEEEECCCCceEEEeeCCCCc--eEEEEEecCCCEEEEeecC-----CeEEEEEcCCCC
Q psy8748 1697 SVHYSGDSR-HCVSGSLDGK-LIIWDTWTGNKTQVIPLRSAW--VMSVAFAQSGNFVACGGMD-----NMCTVYDLNNRD 1767 (2004)
Q Consensus 1697 sLaFSPDG~-~LASGS~DGt-IrVWDl~Tgk~l~ti~~Ht~~--ItsLafSPdg~~LaSGS~D-----GtIrVWDl~t~~ 1767 (2004)
.|+|+|... -++.+-.-|+ ..++|..+++...++...++. --.=+|+|||.+|...-.| |.|-|||.+.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~-- 149 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE-- 149 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc--
Confidence 677777544 3455544444 578888887766655432211 1122699999999876443 8899999974
Q ss_pred CCCcceEEEEEecCccceeeeEEeCCCcEEEeecCC-------------------eEEEEECCCCceeEEeec---cccC
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM-------------------KIVTWNLETGQRIHEVAQ---AHIG 1825 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DG-------------------tI~IWDl~tg~~i~~il~---~h~~ 1825 (2004)
.+..+..+..|.-....+.+..++..++....| .+.+.|..+|+.+.+... .+.-
T Consensus 150 ---~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 150 ---GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred ---ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 345566667777667777777666644443322 233344444444432211 2334
Q ss_pred CeEEEEECCCCCEEEEEECCCe-----EEEEECCCCeEEEEEe-------cCCCCeEEEEEeCCCCEEEEEE-CCCeEEE
Q psy8748 1826 DVVSISLSPDGQYFVTGSVDKS-----CKLWDFREKKCVQTFF-------GHEADVNSVCFHPSGLAFATGS-EDKTARL 1892 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSGS~DGs-----IrIWDlrs~k~I~tl~-------~h~s~ItsIafSPdg~~LaSgS-~DGtIrI 1892 (2004)
.|..++..+||...+.+-..|. --+=-...++.+.-+. .....|-+|+.+.+..+++..+ ..+...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 5677777777765444332221 0111112233332221 1223466788876555555544 4556889
Q ss_pred EEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1893 FDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1893 WDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
||..+|..+..-.... ...+ .+...=+++.+.+|.+.++.-
T Consensus 307 ~da~tG~vv~~a~l~d----aaGv--a~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 307 WDAATGAVVSEAALPD----AAGV--AAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEcCCCcEEecccccc----cccc--eeccCceEEecCCceEEeccc
Confidence 9999998876653322 1222 233344666677888888753
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=93.42 E-value=30 Score=44.53 Aligned_cols=197 Identities=13% Similarity=0.138 Sum_probs=98.1
Q ss_pred CcEEEee-cCCeEEEEECCCCc---eeEEeecc-------ccCCeEEEEECCCCCEEEEEE--C----CCeEEEEECCCC
Q psy8748 1794 TTLLTGS-GDMKIVTWNLETGQ---RIHEVAQA-------HIGDVVSISLSPDGQYFVTGS--V----DKSCKLWDFREK 1856 (2004)
Q Consensus 1794 ~~LlSgS-~DGtI~IWDl~tg~---~i~~il~~-------h~~~ItsLafSPdg~~LaSGS--~----DGsIrIWDlrs~ 1856 (2004)
++|++.+ ..+.|+++|..+.- .+.++... .-.....+..-|+|+.++++- . -|.+.++|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 3466555 78899999998532 22233221 112233455567888887753 2 246888998887
Q ss_pred eEEEEEecCC---CCeEEEEEeCCCCEEEEEEC--------------------CCeEEEEEccCCceeEEEcCCCCCCCe
Q psy8748 1857 KCVQTFFGHE---ADVNSVCFHPSGLAFATGSE--------------------DKTARLFDIRADQQIATYLPPNKNSGF 1913 (2004)
Q Consensus 1857 k~I~tl~~h~---s~ItsIafSPdg~~LaSgS~--------------------DGtIrIWDLrtgk~i~t~~~~~~~s~I 1913 (2004)
+....+.... ..-..+-|.|..+.+++... ..++.+||+.+.+.++++.........
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 7777665432 23456778888888887653 347999999999999998765543445
Q ss_pred EEEEEcC--CCCEEEEEeC-CCeEEEEEC-CCCee----eEEEcc-----C------------CCCeEEEEEcCCCCEEE
Q psy8748 1914 TSCAVSS--SGRYIFCGSD-DNNVHVWDL-LKTTH----NGVLSG-----H------------ENRVTSISLSPNGMALV 1968 (2004)
Q Consensus 1914 tsLafSP--dG~~LaSGSs-DGsIrIWDL-~tge~----l~tL~g-----H------------s~~VtsLaFSPDg~~La 1968 (2004)
..+.|.. +..+=++|+. .++|..|-- ..++- +..+.. - ..-|++|.+|.|.++|.
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY 327 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY 327 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence 5666654 4555444433 444544432 33321 112211 0 23479999999999998
Q ss_pred EEEC-CCeEEEEECCCCeEEEEE
Q psy8748 1969 TSSW-DQFVKVWQESNTIVWKVL 1990 (2004)
Q Consensus 1969 SgS~-DGtIrIWdlstg~l~k~I 1990 (2004)
.++. +|.|+.||+++...=+..
T Consensus 328 vs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 328 VSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp EEETTTTEEEEEE-SSTTS-EEE
T ss_pred EEcccCCcEEEEecCCCCCCcEE
Confidence 7776 899999999876433333
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.098 Score=60.51 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=66.5
Q ss_pred CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEE-EEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-CCe
Q psy8748 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVS-ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE-ADV 1869 (2004)
Q Consensus 1792 dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~Its-LafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~-s~I 1869 (2004)
-+..+++|+.+|.|++|+.................|.+ +....++.+.++++.||.|+.|++.-.+.+.....|. .++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 34568999999999999987322221221122223333 2333356689999999999999998888777666666 445
Q ss_pred EEEEEeCCCCEEEEE--ECCCeEEEEEcc
Q psy8748 1870 NSVCFHPSGLAFATG--SEDKTARLFDIR 1896 (2004)
Q Consensus 1870 tsIafSPdg~~LaSg--S~DGtIrIWDLr 1896 (2004)
.....+..+..+..+ |.|..++.|++.
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchh
Confidence 444444555555555 556666666654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=2.6 Score=55.63 Aligned_cols=189 Identities=12% Similarity=0.138 Sum_probs=90.4
Q ss_pred CCCCEEEEEeCCC------eEEEEECCCCceEEEeeCC--CCceEEEEEecCCCEEEEeecC-----CeEEEEEcCCCCC
Q psy8748 1702 GDSRHCVSGSLDG------KLIIWDTWTGNKTQVIPLR--SAWVMSVAFAQSGNFVACGGMD-----NMCTVYDLNNRDS 1768 (2004)
Q Consensus 1702 PDG~~LASGS~DG------tIrVWDl~Tgk~l~ti~~H--t~~ItsLafSPdg~~LaSGS~D-----GtIrVWDl~t~~~ 1768 (2004)
.++..++.||.++ .+..||..+.+....-... ..... ++ .-++..++.||.+ ..+..||..+..
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~-~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~- 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG-VT-VFNNRIYVIGGIYNSISLNTVESWKPGESK- 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccce-EE-EECCEEEEEeCCCCCEecceEEEEcCCCCc-
Confidence 3455666666542 5778887776553321111 11111 22 2357777888865 346677766542
Q ss_pred CCcceEEEEEecCccceeeeEEeCCCcEEEeecC------CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1769 TGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD------MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D------GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
.......... ..-.+++..++..++.|+.+ ..+..||..+++............-.+++. .++..++.|
T Consensus 370 ---W~~~~~lp~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~G 444 (534)
T PHA03098 370 ---WREEPPLIFP-RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIG 444 (534)
T ss_pred ---eeeCCCcCcC-CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEEC
Confidence 1111111111 11122333455556666632 468889988765432110000111112222 256666666
Q ss_pred ECCC--------eEEEEECCCCeEEEE--EecCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEEccCCce
Q psy8748 1843 SVDK--------SCKLWDFREKKCVQT--FFGHEADVNSVCFHPSGLAFATGSED-----KTARLFDIRADQQ 1900 (2004)
Q Consensus 1843 S~DG--------sIrIWDlrs~k~I~t--l~~h~s~ItsIafSPdg~~LaSgS~D-----GtIrIWDLrtgk~ 1900 (2004)
|.++ .+.+||..+++-... ........ +++. -++..++.|+.+ +.+.+||..+.+-
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 6432 388889876543221 11111111 1222 256667777654 3677888775543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=93.20 E-value=24 Score=45.32 Aligned_cols=225 Identities=14% Similarity=0.137 Sum_probs=102.4
Q ss_pred CCCEEEEee-cCCeEEEEEcCCCCCCCcceEEEEEec---Cc--c--ceeeeEEeC-CCcEEEee------cCCeEEEEE
Q psy8748 1745 SGNFVACGG-MDNMCTVYDLNNRDSTGAAKVIRELLG---YE--G--FLSSCRFID-DTTLLTGS------GDMKIVTWN 1809 (2004)
Q Consensus 1745 dg~~LaSGS-~DGtIrVWDl~t~~~~~~~k~i~sl~g---h~--~--~Vssvafsd-d~~LlSgS------~DGtI~IWD 1809 (2004)
+.++|+..+ ..+.|.|.|+.+.. ...+..+.+.. +. + ....+...+ ++.++++- .-|.+.++|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dP--r~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDP--RKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-T--TS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCC--CCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEc
Confidence 345666665 67899999997532 23334444432 11 1 111122223 44555532 236788888
Q ss_pred CCCCceeEEeecc--ccCCeEEEEECCCCCEEEEEEC--------------------CCeEEEEECCCCeEEEEEecCCC
Q psy8748 1810 LETGQRIHEVAQA--HIGDVVSISLSPDGQYFVTGSV--------------------DKSCKLWDFREKKCVQTFFGHEA 1867 (2004)
Q Consensus 1810 l~tg~~i~~il~~--h~~~ItsLafSPdg~~LaSGS~--------------------DGsIrIWDlrs~k~I~tl~~h~s 1867 (2004)
-++.+........ ....-..+-|.|..+.+++... ..++.+||+.+.+.++++.-...
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 8877665444222 2233456778888888887643 24799999999999998864332
Q ss_pred --CeEEEEEeC--CCCE-EEEEECCCeEEEEEc-cCCce----eEEEcCCC---C------------CCCeEEEEEcCCC
Q psy8748 1868 --DVNSVCFHP--SGLA-FATGSEDKTARLFDI-RADQQ----IATYLPPN---K------------NSGFTSCAVSSSG 1922 (2004)
Q Consensus 1868 --~ItsIafSP--dg~~-LaSgS~DGtIrIWDL-rtgk~----i~t~~~~~---~------------~s~ItsLafSPdG 1922 (2004)
....+.|.. +..+ |+.+.-.++|..|-- ..++- +..+.... . ..-++.+.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 345666654 4444 333334455555543 33321 12221110 0 2347899999999
Q ss_pred CEEEEEeC-CCeEEEEECCCCe---eeEEEc-c---------------CCCCeEEEEEcCCCCEEEEEE
Q psy8748 1923 RYIFCGSD-DNNVHVWDLLKTT---HNGVLS-G---------------HENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1923 ~~LaSGSs-DGsIrIWDL~tge---~l~tL~-g---------------Hs~~VtsLaFSPDg~~LaSgS 1971 (2004)
++|++.+. +|.|+.||+.... ....+. + -.+...-+..|-||+.|+..+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 99988775 8999999996532 232221 1 012235677888999887764
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.10 E-value=20 Score=43.58 Aligned_cols=195 Identities=12% Similarity=0.161 Sum_probs=114.8
Q ss_pred CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCc
Q psy8748 1735 AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQ 1814 (2004)
Q Consensus 1735 ~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~ 1814 (2004)
+-+..+.++ +++...+..+.-+++.|+.+..... . ....... ...-+....++...++..+..+.++|+.+.+
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~---~-~~~lnt~-gyaygv~vsGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPT---L-IGFLNTD-GYAYGVYVSGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcc---e-eccccCC-ceEEEEEecCCEEEEeeccCcEEEEECCCCC
Confidence 446667776 6777777778889999998764221 1 1111112 2333334467777888767777788987665
Q ss_pred eeEE--eeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE---EEEEecCCCCeEEEEEeCCCCEEEEEECCCe
Q psy8748 1815 RIHE--VAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC---VQTFFGHEADVNSVCFHPSGLAFATGSEDKT 1889 (2004)
Q Consensus 1815 ~i~~--il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~---I~tl~~h~s~ItsIafSPdg~~LaSgS~DGt 1889 (2004)
...- ......+.-..++.+ |++-+.+..|+-+.+.|+..... +... .....+.++..+++.-+++.. +.-
T Consensus 160 sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y~vvy--~eg 234 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAYLVVY--DEG 234 (370)
T ss_pred CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeEEEEc--ccc
Confidence 4321 122233344566665 78888888999999999876532 2222 223367777777765555544 445
Q ss_pred EEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1890 ARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1890 IrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
+.+-|..+.+....+..-.....+..-.+.-.|++......+.-+.+.|+.+
T Consensus 235 vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 235 VLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred eEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
Confidence 7788877766555443222222221112333466666666666666666644
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=92.37 E-value=8 Score=45.46 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=83.2
Q ss_pred CCeEEEEECCCCCEEEEEEC-C---------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEE-EECCCeEEEE
Q psy8748 1825 GDVVSISLSPDGQYFVTGSV-D---------KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFAT-GSEDKTARLF 1893 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSGS~-D---------GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaS-gS~DGtIrIW 1893 (2004)
.....-..+|+|+++ .|.. | |.++.|-.. ..+..+...-.--+.++|+.+.+.++. -+.+-.|.-|
T Consensus 109 nR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCCCcee-eeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 345566788999984 4432 1 334444321 112222222233457889887766554 4445667667
Q ss_pred E--ccCCce-----eEEEcCC-C-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcC
Q psy8748 1894 D--IRADQQ-----IATYLPP-N-KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP 1962 (2004)
Q Consensus 1894 D--Lrtgk~-----i~t~~~~-~-~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSP 1962 (2004)
| ..+|.. +..+... . ....--.++++.+|++.++.-..|+|...|..+|+.+..++-....|++++|-.
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 7 444432 2222110 0 011122345677899999988999999999999999999998899999999953
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.14 E-value=4.8 Score=52.62 Aligned_cols=175 Identities=13% Similarity=0.135 Sum_probs=85.5
Q ss_pred eEEEEECCCCceeEEee-ccccCCeEEEEECCCCCEEEEEECC--CeEEEEECCCCeEEEEEecCCCCeE-EEEEeCCCC
Q psy8748 1804 KIVTWNLETGQRIHEVA-QAHIGDVVSISLSPDGQYFVTGSVD--KSCKLWDFREKKCVQTFFGHEADVN-SVCFHPSGL 1879 (2004)
Q Consensus 1804 tI~IWDl~tg~~i~~il-~~h~~~ItsLafSPdg~~LaSGS~D--GsIrIWDlrs~k~I~tl~~h~s~It-sIafSPdg~ 1879 (2004)
.+..||..++....... .........+. -++...++||.+ ..+..||..+++-.. ......+.. .....-+|+
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~ 364 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNV 364 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCE
Confidence 46678877765432110 01111111222 256777777754 357888876553221 111111111 111223677
Q ss_pred EEEEEECCC---eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EEEccCCCC
Q psy8748 1880 AFATGSEDK---TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN--GVLSGHENR 1954 (2004)
Q Consensus 1880 ~LaSgS~DG---tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l--~tL~gHs~~ 1954 (2004)
..+.||.++ .+..||.++++-...-..+..... ..+..-+|+..+.| |.+.+||..+.+-. ..+......
T Consensus 365 IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~ 439 (480)
T PHA02790 365 IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--SCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDN 439 (480)
T ss_pred EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--ceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccc
Confidence 777777654 477888776543322111111111 12223456666666 45778887654432 222211122
Q ss_pred eEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEE
Q psy8748 1955 VTSISLSPNGMALVTSSWD-----QFVKVWQESNTIVWKV 1989 (2004)
Q Consensus 1955 VtsLaFSPDg~~LaSgS~D-----GtIrIWdlstg~l~k~ 1989 (2004)
...+. -+|+..+.||.+ ..|..||..+++ |..
T Consensus 440 ~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~-W~~ 476 (480)
T PHA02790 440 PELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS-WNI 476 (480)
T ss_pred cEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe-EEe
Confidence 22222 267777888764 358888888763 543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.79 E-value=29 Score=43.82 Aligned_cols=147 Identities=10% Similarity=0.045 Sum_probs=79.4
Q ss_pred CceEEEEEecCCCEEEEee-----------cCC-eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC
Q psy8748 1735 AWVMSVAFAQSGNFVACGG-----------MDN-MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD 1802 (2004)
Q Consensus 1735 ~~ItsLafSPdg~~LaSGS-----------~DG-tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D 1802 (2004)
.....|+|.++|+.+++-. ..+ .|.+++-.++. ........+...-.....+.+.+++ ++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd--G~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD--GKYDKSNVFAEELSMVTGLAVAVGG-VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC--CCcceeEEeecCCCCccceeEecCC-EEEeCCC
Confidence 3456789999998777643 123 66666543322 1222223333333455677777777 6665554
Q ss_pred CeEEEEECCCC-----c--eeEEeecc----ccCCeEEEEECCCCCEEEEEECC-------------------CeEEEEE
Q psy8748 1803 MKIVTWNLETG-----Q--RIHEVAQA----HIGDVVSISLSPDGQYFVTGSVD-------------------KSCKLWD 1852 (2004)
Q Consensus 1803 GtI~IWDl~tg-----~--~i~~il~~----h~~~ItsLafSPdg~~LaSGS~D-------------------GsIrIWD 1852 (2004)
...++.|.... + .+..-+.. +......++|.|||.+.++-+.. |.|.-+|
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43334354321 1 11111111 12347789999999866544421 4466666
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE
Q psy8748 1853 FREKKCVQTFFGHEADVNSVCFHPSGLAFATGS 1885 (2004)
Q Consensus 1853 lrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS 1885 (2004)
...++.. .+...-.....++|+++|+.+++-.
T Consensus 171 pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence 6554432 2222233456899999998877644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=91.17 E-value=51 Score=41.55 Aligned_cols=196 Identities=17% Similarity=0.152 Sum_probs=107.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEeeCCC--CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEe
Q psy8748 1702 GDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS--AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELL 1779 (2004)
Q Consensus 1702 PDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht--~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~ 1779 (2004)
-+|+ +..+..||.|.-.|..+++.+.....-. ..+.+-.+..+|+ ++.++.+|.+..+|..++.. .......
T Consensus 67 ~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~----~W~~~~~ 140 (370)
T COG1520 67 GDGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL----VWSRNVG 140 (370)
T ss_pred eCCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE----EEEEecC
Confidence 3444 4445678888888888888765443221 2222222333555 77788888888888765431 2222222
Q ss_pred cCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccc--cCCeEEEEECCCCCEEEEEEC--CCeEEEEECCC
Q psy8748 1780 GYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAH--IGDVVSISLSPDGQYFVTGSV--DKSCKLWDFRE 1855 (2004)
Q Consensus 1780 gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h--~~~ItsLafSPdg~~LaSGS~--DGsIrIWDlrs 1855 (2004)
+. ..........+..++.++.+|.+...|..+|.......... ...+..--. .....++.+.. ++.+.-.|..+
T Consensus 141 ~~-~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 141 GS-PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred CC-eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccC
Confidence 20 11222222345556666678999999999888765542221 111111111 12334555555 66777778888
Q ss_pred CeEEEEEecCC----CCe--E-EEE---EeCCCCEEEEEECCCeEEEEEccCCceeEEEcC
Q psy8748 1856 KKCVQTFFGHE----ADV--N-SVC---FHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1856 ~k~I~tl~~h~----s~I--t-sIa---fSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
+......+.+. ..+ . .+. ..-++ .++.++.+|.+...|..+++.+..+..
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceEEEEec
Confidence 87665532111 111 0 110 11122 346677788899999999999988854
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=90.75 E-value=19 Score=44.88 Aligned_cols=232 Identities=17% Similarity=0.190 Sum_probs=114.7
Q ss_pred eEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEE----EecCccceeeeEEeCC----CcEEEeecC------
Q psy8748 1737 VMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRE----LLGYEGFLSSCRFIDD----TTLLTGSGD------ 1802 (2004)
Q Consensus 1737 ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~s----l~gh~~~Vssvafsdd----~~LlSgS~D------ 1802 (2004)
.++|+|.|+|+.+++ ...|.|++++- .+.. ...+.. ..........+++.++ ..+++....
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~-~g~~---~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDK-DGSL---KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEET-TTEE---CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeC-CCcC---cceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 578999999887665 55999999983 2211 111212 2233445677777763 444443331
Q ss_pred ---CeEEEEECCCC--c-----eeEEeec---cccCCeEEEEECCCCCEEEEEECCC-------------eEEEEECCCC
Q psy8748 1803 ---MKIVTWNLETG--Q-----RIHEVAQ---AHIGDVVSISLSPDGQYFVTGSVDK-------------SCKLWDFREK 1856 (2004)
Q Consensus 1803 ---GtI~IWDl~tg--~-----~i~~il~---~h~~~ItsLafSPdg~~LaSGS~DG-------------sIrIWDlrs~ 1856 (2004)
..|.-|....+ . .+..... ........|.|.|||.+.++.+..+ .|.-.+....
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~ 158 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS 158 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCc
Confidence 24555554433 1 1111111 1233456799999997666555433 2333332211
Q ss_pred -------------eEEEEEecCCCCeEEEEEeCC-CCEEEEE-ECCCeEEEEEccCCce---------------------
Q psy8748 1857 -------------KCVQTFFGHEADVNSVCFHPS-GLAFATG-SEDKTARLFDIRADQQ--------------------- 1900 (2004)
Q Consensus 1857 -------------k~I~tl~~h~s~ItsIafSPd-g~~LaSg-S~DGtIrIWDLrtgk~--------------------- 1900 (2004)
....--.++. ....++|+|. |.++++= +.++.=.|.-+..+..
T Consensus 159 ~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 159 IPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp B-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0000001222 2457899998 6554432 2222222222221110
Q ss_pred --------eEEEcCCCCCCCeEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCeeeE---E-EccCCCCeEEEEEc
Q psy8748 1901 --------IATYLPPNKNSGFTSCAVSS-------SGRYIFCGSDDNNVHVWDLLKTTHNG---V-LSGHENRVTSISLS 1961 (2004)
Q Consensus 1901 --------i~t~~~~~~~s~ItsLafSP-------dG~~LaSGSsDGsIrIWDL~tge~l~---t-L~gHs~~VtsLaFS 1961 (2004)
...+ .+...+..+.|.. .|.++++.-..+.|....+..+..+. . +.....++.++++.
T Consensus 238 ~~~~~~~P~~~~---~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~ 314 (331)
T PF07995_consen 238 SCPGFVPPVFAY---PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQG 314 (331)
T ss_dssp S-TTS---SEEE---TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEE
T ss_pred CCCCcCccceee---cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEc
Confidence 1111 1123455666653 45566666667788888886553322 1 23455589999999
Q ss_pred CCCCEEEEEECCCeEE
Q psy8748 1962 PNGMALVTSSWDQFVK 1977 (2004)
Q Consensus 1962 PDg~~LaSgS~DGtIr 1977 (2004)
|||.+.++.+.+|.|+
T Consensus 315 pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 315 PDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTSEEEEEE-TTTTEE
T ss_pred CCCeEEEEECCCCeEe
Confidence 9999888888888764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=90.67 E-value=57 Score=41.27 Aligned_cols=147 Identities=19% Similarity=0.223 Sum_probs=79.4
Q ss_pred cceeEEEEeCCCCEEEEEe-----------CCC-eEEEEECCC--Cc--eEEEeeCCCCceEEEEEecCCCEEEEeecCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGS-----------LDG-KLIIWDTWT--GN--KTQVIPLRSAWVMSVAFAQSGNFVACGGMDN 1756 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS-----------~DG-tIrVWDl~T--gk--~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG 1756 (2004)
.....|+|.++|+.+++-. ..+ .|.+++-.+ |+ ....+...-.....+++.+++ .++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4567899999999777642 223 788886543 32 233444334456889999888 444 44443
Q ss_pred eEEEEEcCCCCCCC-cceEEEE-Eec----CccceeeeEEeCCCcEEEeec--------------------CCeEEEEEC
Q psy8748 1757 MCTVYDLNNRDSTG-AAKVIRE-LLG----YEGFLSSCRFIDDTTLLTGSG--------------------DMKIVTWNL 1810 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~-~~k~i~s-l~g----h~~~Vssvafsdd~~LlSgS~--------------------DGtI~IWDl 1810 (2004)
..++.+.+...... ..+.+.. +.. +......+.+.+++.|+++.. .|.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 22333443221111 2222222 222 123456677776666554222 145666666
Q ss_pred CCCceeEEeeccccCCeEEEEECCCCCEEEEEE
Q psy8748 1811 ETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1811 ~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
..++.. .+..+ ......++|+++|+++++-.
T Consensus 172 dg~~~e-~~a~G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLR-VVAHG-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEE-EEecC-cCCCccceECCCCCEEEEcc
Confidence 654432 22222 34457899999998876543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=29 Score=43.97 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=19.3
Q ss_pred eEEEEECCCCceeEEeeccccCCe--EEEEECCCCCEEEEEECC
Q psy8748 1804 KIVTWNLETGQRIHEVAQAHIGDV--VSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1804 tI~IWDl~tg~~i~~il~~h~~~I--tsLafSPdg~~LaSGS~D 1845 (2004)
.+..||..+++..... ....... .+....-+++..+.|+.+
T Consensus 107 ~v~~YD~~~n~W~~~~-~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 107 DVYKYDPKTNSWQKLD-TRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cEEEEeCCCCEEEeCC-CCCCCcccceEEEEeeCCEEEEECCCC
Confidence 4778888776543211 1111111 112221367777777754
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=90.42 E-value=67 Score=41.63 Aligned_cols=147 Identities=12% Similarity=0.144 Sum_probs=86.4
Q ss_pred CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-----CCCcEEEeecCCeEEEEECCC--Cc----
Q psy8748 1746 GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-----DDTTLLTGSGDMKIVTWNLET--GQ---- 1814 (2004)
Q Consensus 1746 g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-----dd~~LlSgS~DGtI~IWDl~t--g~---- 1814 (2004)
...+++|+..|.++||+....+.... ...-......+|-.+... .+...++.-.-..+.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~--~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE--DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc--cEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 46899999999999999855432221 111122233455544432 122344445566777777621 11
Q ss_pred --eeEEeeccccC--CeEEEEECC----C-CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE
Q psy8748 1815 --RIHEVAQAHIG--DVVSISLSP----D-GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS 1885 (2004)
Q Consensus 1815 --~i~~il~~h~~--~ItsLafSP----d-g~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS 1885 (2004)
........|.- ....+++-| . ..++.+-+.||.+.+|+-+.......+.. ---...++|.+....|++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 11122223322 233344433 2 35788899999999999765543333332 22334577888888899999
Q ss_pred CCCeEEEEEc
Q psy8748 1886 EDKTARLFDI 1895 (2004)
Q Consensus 1886 ~DGtIrIWDL 1895 (2004)
.+..+..|..
T Consensus 194 ss~~l~~Yky 203 (418)
T PF14727_consen 194 SSWTLECYKY 203 (418)
T ss_pred CceeEEEecH
Confidence 8889998875
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=90.27 E-value=4.7 Score=53.91 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=76.7
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECC----
Q psy8748 1867 ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS--SGRYIFCGSDDNNVHVWDLL---- 1940 (2004)
Q Consensus 1867 s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP--dG~~LaSGSsDGsIrIWDL~---- 1940 (2004)
..+.-+.-+.-++..++.+....+.|||.+.+........ .....|..+.|.. +|+.+++.+-.+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3444555555555555555566799999998876554433 3356788888864 88888888889999988531
Q ss_pred -----CCeeeEEE--ccCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1941 -----KTTHNGVL--SGHE-NRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1941 -----tge~l~tL--~gHs-~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
...+++.+ ..|+ .+|.+..|.++|..++.+| +.+.|++-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 22333333 3444 6899999999998776665 568888643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=90.13 E-value=11 Score=50.44 Aligned_cols=196 Identities=12% Similarity=0.138 Sum_probs=99.7
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEE-e-eccccCCeEEEEEC
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHE-V-AQAHIGDVVSISLS 1833 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~-i-l~~h~~~ItsLafS 1833 (2004)
-.|+||++.. .......-..+.+..+.|+++..+++...+|++++|++........ + .......|..+.+.
T Consensus 64 ~~I~If~~sG-------~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f 136 (829)
T KOG2280|consen 64 PYIRIFNISG-------QLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFF 136 (829)
T ss_pred eeEEEEeccc-------cchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEe
Confidence 3467777642 2333333334477788999999999999999999999854322210 1 11223335555554
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEec---CCCCeEEEEEeCCCC---EEEEEE-CCCeEEEEEccCCce-eEEEc
Q psy8748 1834 PDGQYFVTGSVDKSCKLWDFREKKCVQTFFG---HEADVNSVCFHPSGL---AFATGS-EDKTARLFDIRADQQ-IATYL 1905 (2004)
Q Consensus 1834 Pdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~---h~s~ItsIafSPdg~---~LaSgS-~DGtIrIWDLrtgk~-i~t~~ 1905 (2004)
.+|- ++-..+|.+.+-.-.......++.. ...+-.|-...+++. .++-.. ..| ..++....... ...+
T Consensus 137 ~~GV--avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~- 212 (829)
T KOG2280|consen 137 HNGV--AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHAL- 212 (829)
T ss_pred cCce--EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccccccc-
Confidence 4553 3333455554443222212222221 111112222222221 111110 001 01111111111 1111
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc--cCCCCeEEEEEcCCC
Q psy8748 1906 PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS--GHENRVTSISLSPNG 1964 (2004)
Q Consensus 1906 ~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~--gHs~~VtsLaFSPDg 1964 (2004)
......+..+.+||++++|+--..+|.|.+-+....+....+. .|. .-..++|+.+.
T Consensus 213 -~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 213 -SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred -CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence 1123568889999999999999999999999887766665554 222 22366665443
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=90.07 E-value=28 Score=43.24 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=27.7
Q ss_pred eEEeCCCcEEEeecC-----------CeEEEEECCCCceeEEeeccccCCeE--EEEECCCCCEEEEEECC
Q psy8748 1788 CRFIDDTTLLTGSGD-----------MKIVTWNLETGQRIHEVAQAHIGDVV--SISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1788 vafsdd~~LlSgS~D-----------GtI~IWDl~tg~~i~~il~~h~~~It--sLafSPdg~~LaSGS~D 1845 (2004)
+...++...+.|+.+ ..+..||..++...... ........ +.+..-+++..+.|+.+
T Consensus 59 ~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~-~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 59 AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD-TRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCC-CCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 334455566666642 24778888776543211 11111111 11112367777777754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=90.05 E-value=87 Score=43.94 Aligned_cols=256 Identities=10% Similarity=0.009 Sum_probs=129.3
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCce-------EE--EeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEc---CCCC
Q psy8748 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNK-------TQ--VIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL---NNRD 1767 (2004)
Q Consensus 1700 FSPDG~~LASGS~DGtIrVWDl~Tgk~-------l~--ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl---~t~~ 1767 (2004)
+-++...++..+.+|.|+--...+... .. .++ ....+..+........++..+..|.+..... ....
T Consensus 494 lI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klK-e~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 494 LIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTK-EDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEAS 572 (805)
T ss_pred ccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccC-CCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCC
Confidence 345677888889999988776543221 11 112 1234444444555666666677776665544 3222
Q ss_pred CCCcceEE---EEEecCccceeeeEEe---CCCcEEEeecCCeEEEEECCCCc-------eeEEeeccccCCeEEEEECC
Q psy8748 1768 STGAAKVI---RELLGYEGFLSSCRFI---DDTTLLTGSGDMKIVTWNLETGQ-------RIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1768 ~~~~~k~i---~sl~gh~~~Vssvafs---dd~~LlSgS~DGtI~IWDl~tg~-------~i~~il~~h~~~ItsLafSP 1834 (2004)
....+..+ ..+......+.++... ++..++..+.+|.++-.+...-. ....+ . ..+.+..+....
T Consensus 573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikL-k-e~D~lv~v~~~~ 650 (805)
T PRK05560 573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINL-D-EGDELIGVRLTD 650 (805)
T ss_pred cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeecc-C-CCCEEEEEEEeC
Confidence 11222222 1222333444455444 45678999999999887664321 11111 1 223444444444
Q ss_pred CCCEEEEEECCCeEEEEECCC---------CeEEEEEecCCCCeEEEE-EeCCCCEEEEEECCCeEEEEEccCC------
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFRE---------KKCVQTFFGHEADVNSVC-FHPSGLAFATGSEDKTARLFDIRAD------ 1898 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs---------~k~I~tl~~h~s~ItsIa-fSPdg~~LaSgS~DGtIrIWDLrtg------ 1898 (2004)
....++..+..|.+..+.... |.....+. ....|.++. +.+++.+++..+..|.++...+...
T Consensus 651 ~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~ 729 (805)
T PRK05560 651 GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLR-EGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRG 729 (805)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCC-CCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCC
Confidence 455677777788777665432 12222232 223344443 3333346788888898888765321
Q ss_pred -ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcC
Q psy8748 1899 -QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP 1962 (2004)
Q Consensus 1899 -k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSP 1962 (2004)
+-...+........+..+........++..+.+|.+..++...-. ........|..+.+..
T Consensus 730 ~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~---~~gR~a~GVk~I~L~~ 791 (805)
T PRK05560 730 GKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEIS---ITGRNTQGVRLIRLDE 791 (805)
T ss_pred CCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCC---ccccCCCCeeeEecCC
Confidence 112222111212333333333334456666777877777654321 1112233455565543
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.59 E-value=8.5 Score=50.39 Aligned_cols=183 Identities=11% Similarity=0.053 Sum_probs=84.1
Q ss_pred CCEEEEEeCCC-----eEEEEECCCCceEEEeeCCCCce-EEEEEecCCCEEEEeecCC--eEEEEEcCCCCCCCcceEE
Q psy8748 1704 SRHCVSGSLDG-----KLIIWDTWTGNKTQVIPLRSAWV-MSVAFAQSGNFVACGGMDN--MCTVYDLNNRDSTGAAKVI 1775 (2004)
Q Consensus 1704 G~~LASGS~DG-----tIrVWDl~Tgk~l~ti~~Ht~~I-tsLafSPdg~~LaSGS~DG--tIrVWDl~t~~~~~~~k~i 1775 (2004)
+..+++||.++ .+..||..+++....-....... .+++ .-++...+.||.++ .+..|+...+ .....
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n----~W~~~ 346 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDA----AWVNM 346 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCC----eEEEC
Confidence 45566676543 46678877665433211111111 1222 23677778887643 4667775432 11221
Q ss_pred EEEecCccceeeeEEeCCCcEEEeecCC---eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEE
Q psy8748 1776 RELLGYEGFLSSCRFIDDTTLLTGSGDM---KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852 (2004)
Q Consensus 1776 ~sl~gh~~~Vssvafsdd~~LlSgS~DG---tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWD 1852 (2004)
..+.... .-.+++..++...+.|+.++ .+..||..+++............-.+++ .-+|+..+.| |.+.+||
T Consensus 347 ~~l~~~r-~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~yd 421 (480)
T PHA02790 347 PSLLKPR-CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYC 421 (480)
T ss_pred CCCCCCC-cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEec
Confidence 1111111 11233334555666666543 4778888776543211111111111222 2245555555 4577888
Q ss_pred CCCCeEEE--EEecCCCCeEEEEEeCCCCEEEEEECCC-----eEEEEEccCC
Q psy8748 1853 FREKKCVQ--TFFGHEADVNSVCFHPSGLAFATGSEDK-----TARLFDIRAD 1898 (2004)
Q Consensus 1853 lrs~k~I~--tl~~h~s~ItsIafSPdg~~LaSgS~DG-----tIrIWDLrtg 1898 (2004)
.++++-.. .+....... +++. -+|+..++||.++ .+..||..++
T Consensus 422 p~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 87654322 111111112 2222 2566777776542 3555555433
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=89.30 E-value=35 Score=47.00 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=56.8
Q ss_pred CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCc
Q psy8748 1735 AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQ 1814 (2004)
Q Consensus 1735 ~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~ 1814 (2004)
-.|..+.++++|.+++..|..| |.|-.+... ......+.+....+.|-.+. +...
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r-----~g~~~~~~~g~~~i~Crt~~------------------v~~~- 139 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRR-----WGKNGEFEDGKKEINCRTVP------------------VDER- 139 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccc-----cCccccccCCCcceeEEEEE------------------echh-
Confidence 3588899999999999999877 555544321 00011122222223322221 1110
Q ss_pred eeEEeeccccCCeEEEEECCC---CCEEEEEECCCeEEEEECCCC
Q psy8748 1815 RIHEVAQAHIGDVVSISLSPD---GQYFVTGSVDKSCKLWDFREK 1856 (2004)
Q Consensus 1815 ~i~~il~~h~~~ItsLafSPd---g~~LaSGS~DGsIrIWDlrs~ 1856 (2004)
. +.......|..+.|||. +..|++-+.|+++++||+...
T Consensus 140 -~--~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 140 -F--FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -h--ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 0 11233456888999995 579999999999999999754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=88.29 E-value=34 Score=42.56 Aligned_cols=190 Identities=14% Similarity=0.088 Sum_probs=87.3
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCceEEEeeCC---CC---ceEEEEEecCCCEEEEeecC-----CeEEEEEcC
Q psy8748 1703 DSRHCVSGSLD-------GKLIIWDTWTGNKTQVIPLR---SA---WVMSVAFAQSGNFVACGGMD-----NMCTVYDLN 1764 (2004)
Q Consensus 1703 DG~~LASGS~D-------GtIrVWDl~Tgk~l~ti~~H---t~---~ItsLafSPdg~~LaSGS~D-----GtIrVWDl~ 1764 (2004)
++..++.||.+ ..+.+||..+.+-...-... .. ....+.+ ++.+++.|+.+ ..+.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 35566666653 35788888776433211110 10 1111222 46677777754 246677775
Q ss_pred CCCCCCcceEEEEEe----cCccceeeeEEeCCCcEEEeecC-----------CeEEEEECCCCceeEEeecc---ccCC
Q psy8748 1765 NRDSTGAAKVIRELL----GYEGFLSSCRFIDDTTLLTGSGD-----------MKIVTWNLETGQRIHEVAQA---HIGD 1826 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~----gh~~~Vssvafsdd~~LlSgS~D-----------GtI~IWDl~tg~~i~~il~~---h~~~ 1826 (2004)
+.. ........ .....-.+++..++..++.|+.+ ..+.+||..+.+........ ....
T Consensus 110 t~~----W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~ 185 (341)
T PLN02153 110 KNE----WTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRG 185 (341)
T ss_pred CCE----EEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCC
Confidence 432 22111110 11111222333455556666643 25778898876543211100 0111
Q ss_pred eEEEEECCCCCEEEEEECC-------------CeEEEEECCCCeEEEEEe-c--CCCCeEEEEEeCCCCEEEEEECC---
Q psy8748 1827 VVSISLSPDGQYFVTGSVD-------------KSCKLWDFREKKCVQTFF-G--HEADVNSVCFHPSGLAFATGSED--- 1887 (2004)
Q Consensus 1827 ItsLafSPdg~~LaSGS~D-------------GsIrIWDlrs~k~I~tl~-~--h~s~ItsIafSPdg~~LaSgS~D--- 1887 (2004)
-.+++. -+++.++.|+.+ ..+.+||..+.+-...-. + ........+..-++.+++.|+..
T Consensus 186 ~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~ 264 (341)
T PLN02153 186 GAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPD 264 (341)
T ss_pred cceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCc
Confidence 112222 245665655432 358889987665332211 0 11111111122356677777742
Q ss_pred -----------CeEEEEEccCCc
Q psy8748 1888 -----------KTARLFDIRADQ 1899 (2004)
Q Consensus 1888 -----------GtIrIWDLrtgk 1899 (2004)
..+..||..+.+
T Consensus 265 ~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 265 LKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred cccccccccccccEEEEEcCccE
Confidence 257778876544
|
|
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.3e+02 Score=42.47 Aligned_cols=238 Identities=8% Similarity=-0.028 Sum_probs=121.6
Q ss_pred ecCCCEEEEeecCCeEEEEEcCCCCC---CCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEEC---CC----
Q psy8748 1743 AQSGNFVACGGMDNMCTVYDLNNRDS---TGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNL---ET---- 1812 (2004)
Q Consensus 1743 SPdg~~LaSGS~DGtIrVWDl~t~~~---~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl---~t---- 1812 (2004)
-++...++..+.+|.|+--....... .........+.........+.......++..+..|.++.... ..
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~ 574 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRT 574 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcC
Confidence 34566777778888888776543211 000111111112222233333345566777888888776644 22
Q ss_pred --CceeEEeec-cccCC-eEEEEECC--CCCEEEEEECCCeEEEEECCCC-------eEEEEEecCCCCeEEEEEeCCCC
Q psy8748 1813 --GQRIHEVAQ-AHIGD-VVSISLSP--DGQYFVTGSVDKSCKLWDFREK-------KCVQTFFGHEADVNSVCFHPSGL 1879 (2004)
Q Consensus 1813 --g~~i~~il~-~h~~~-ItsLafSP--dg~~LaSGS~DGsIrIWDlrs~-------k~I~tl~~h~s~ItsIafSPdg~ 1879 (2004)
|..+..... ..... +.++.+.. +...++..+.+|.++-.++... .....+.. .+.+..+.......
T Consensus 575 ~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke-~D~lv~v~~~~~~d 653 (805)
T PRK05560 575 ARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE-GDELIGVRLTDGDD 653 (805)
T ss_pred CCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC-CCEEEEEEEeCCCC
Confidence 121111111 12223 44444442 5678999999999988765432 22223332 34454554455556
Q ss_pred EEEEEECCCeEEEEEccCCcee-------EEEcCCCCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECCC---------C
Q psy8748 1880 AFATGSEDKTARLFDIRADQQI-------ATYLPPNKNSGFT-SCAVSSSGRYIFCGSDDNNVHVWDLLK---------T 1942 (2004)
Q Consensus 1880 ~LaSgS~DGtIrIWDLrtgk~i-------~t~~~~~~~s~It-sLafSPdG~~LaSGSsDGsIrIWDL~t---------g 1942 (2004)
.++..+..|.+..+....-... ....... ...|. .+.+.+++.+++..+..|.++...+.. |
T Consensus 654 ~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG 732 (805)
T PRK05560 654 DILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKG 732 (805)
T ss_pred EEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCc
Confidence 6777778888777765321111 1111111 22333 334444445788888999888876521 1
Q ss_pred eeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1943 THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1943 e~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
.....+....+.+..+....+...++..+.+|.+..++..
T Consensus 733 ~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 733 VITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred EEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence 2222233333455444433344456666778877777654
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=88.06 E-value=42 Score=41.76 Aligned_cols=183 Identities=13% Similarity=0.121 Sum_probs=85.9
Q ss_pred eEEEEECCCCceeEEeeccc-cC----CeEEEEECCCCCEEEEEECC-----CeEEEEECCCCeEEE--EEec---CCCC
Q psy8748 1804 KIVTWNLETGQRIHEVAQAH-IG----DVVSISLSPDGQYFVTGSVD-----KSCKLWDFREKKCVQ--TFFG---HEAD 1868 (2004)
Q Consensus 1804 tI~IWDl~tg~~i~~il~~h-~~----~ItsLafSPdg~~LaSGS~D-----GsIrIWDlrs~k~I~--tl~~---h~s~ 1868 (2004)
.+.+||..+.+......... .. ....+.+ ++++++.|+.+ ..+.+||..+.+-.. .+.. ....
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 57888887765432111110 00 1122222 45666777653 257888987654321 1110 1111
Q ss_pred eEEEEEeCCCCEEEEEECC-----------CeEEEEEccCCceeEEEcCC---CCCCCeEEEEEcCCCCEEEEEeCC---
Q psy8748 1869 VNSVCFHPSGLAFATGSED-----------KTARLFDIRADQQIATYLPP---NKNSGFTSCAVSSSGRYIFCGSDD--- 1931 (2004)
Q Consensus 1869 ItsIafSPdg~~LaSgS~D-----------GtIrIWDLrtgk~i~t~~~~---~~~s~ItsLafSPdG~~LaSGSsD--- 1931 (2004)
....+..-+++.++.|+.+ ..+.+||..+.+-...-... ........+. -++++++.|+.+
T Consensus 129 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~ 206 (341)
T PLN02153 129 TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV--VQGKIWVVYGFATSI 206 (341)
T ss_pred eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE--ECCeEEEEecccccc
Confidence 1112222355666676653 24778888765432211100 1111112222 356666655432
Q ss_pred ----------CeEEEEECCCCeeeEEEc-c--CCCCeEEEEEcCCCCEEEEEECC--------------CeEEEEECCCC
Q psy8748 1932 ----------NNVHVWDLLKTTHNGVLS-G--HENRVTSISLSPNGMALVTSSWD--------------QFVKVWQESNT 1984 (2004)
Q Consensus 1932 ----------GsIrIWDL~tge~l~tL~-g--Hs~~VtsLaFSPDg~~LaSgS~D--------------GtIrIWdlstg 1984 (2004)
..+.+||..+.+-...-. + ...+...-+..-++.+++.||.. ..|..||..+.
T Consensus 207 ~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 207 LPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred ccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 458889987654332211 0 11111111122256777777752 25778888765
Q ss_pred eEEEEEE
Q psy8748 1985 IVWKVLK 1991 (2004)
Q Consensus 1985 ~l~k~Ik 1991 (2004)
.|..+.
T Consensus 287 -~W~~~~ 292 (341)
T PLN02153 287 -VWEKLG 292 (341)
T ss_pred -EEEecc
Confidence 477664
|
|
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=88.04 E-value=24 Score=47.52 Aligned_cols=198 Identities=10% Similarity=0.105 Sum_probs=99.4
Q ss_pred CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD 1793 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd 1793 (2004)
-.|+|++. +|+.+..+.-..+.+-.+.|+.+ ..|++...+|++.+|++-...... . . .-.......|..+.+..+
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~-~-s-vg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIES-N-S-VGFESQMSDIVECRFFHN 138 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcc-c-c-cccccccCceeEEEEecC
Confidence 45888885 67777666555557889999855 456667789999999985431110 0 0 001122233444444444
Q ss_pred CcEEEeecCCeEEEEECCCCceeEEeec--cccCCeEEEEECCCCC---EEEEEE-CCCeEEEEECCCCe-EEEEEecCC
Q psy8748 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQ--AHIGDVVSISLSPDGQ---YFVTGS-VDKSCKLWDFREKK-CVQTFFGHE 1866 (2004)
Q Consensus 1794 ~~LlSgS~DGtI~IWDl~tg~~i~~il~--~h~~~ItsLafSPdg~---~LaSGS-~DGsIrIWDlrs~k-~I~tl~~h~ 1866 (2004)
+. ++-+.+|.+.+.+-.......+... ...-+-.|-...+++. .++-.. ..| ..++-..... ....+....
T Consensus 139 GV-avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~ 216 (829)
T KOG2280|consen 139 GV-AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPN 216 (829)
T ss_pred ce-EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCC
Confidence 43 3333444444433222111111111 1111112222222211 111111 000 0111111111 112222224
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEc
Q psy8748 1867 ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVS 1919 (2004)
Q Consensus 1867 s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafS 1919 (2004)
..+..+..+|+.++++--..+|.|.+-+.+..+....+....+..+ ..++|.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wc 268 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWC 268 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCch-Hhceee
Confidence 5678899999999999999999999999887777776654443222 255554
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=87.92 E-value=1.2 Score=39.99 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1952 ENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1952 s~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
...|..++|+|...+||.|+.||.|.+|+++..+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 45799999999999999999999999999965443
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.89 E-value=37 Score=41.94 Aligned_cols=107 Identities=16% Similarity=0.270 Sum_probs=53.0
Q ss_pred CCCcEEEeecC-----CeEEEEECCCCcee--EEeeccccCCe--EEEEECCCCCEEEEEECC-----CeEEEEECCCCe
Q psy8748 1792 DDTTLLTGSGD-----MKIVTWNLETGQRI--HEVAQAHIGDV--VSISLSPDGQYFVTGSVD-----KSCKLWDFREKK 1857 (2004)
Q Consensus 1792 dd~~LlSgS~D-----GtI~IWDl~tg~~i--~~il~~h~~~I--tsLafSPdg~~LaSGS~D-----GsIrIWDlrs~k 1857 (2004)
++..++.|+.+ ..+..||+.+.... .........+. .+++.. +++..+.|+.. ..+..||..+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45556666654 35777787766531 11111111111 122222 46666666642 358888987654
Q ss_pred EEE--EEecCCCCeEEEEEeCCCCEEEEEECCCe----EEEEEccCCce
Q psy8748 1858 CVQ--TFFGHEADVNSVCFHPSGLAFATGSEDKT----ARLFDIRADQQ 1900 (2004)
Q Consensus 1858 ~I~--tl~~h~s~ItsIafSPdg~~LaSgS~DGt----IrIWDLrtgk~ 1900 (2004)
-.. .+.. .......+..-++++.+.|+.++. +.+||..+.+-
T Consensus 151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 322 1211 111222223345667777776543 56888876543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=87.82 E-value=98 Score=40.86 Aligned_cols=232 Identities=11% Similarity=0.093 Sum_probs=118.2
Q ss_pred ecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC-ccceeeeEEeCCC--cEEEeecCCe--EEEEECCCCceeE
Q psy8748 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY-EGFLSSCRFIDDT--TLLTGSGDMK--IVTWNLETGQRIH 1817 (2004)
Q Consensus 1743 SPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh-~~~Vssvafsdd~--~LlSgS~DGt--I~IWDl~tg~~i~ 1817 (2004)
..++..++.+..+|.+....+..... .......+. .....++.+.+++ .+++|+.-|. +..|....-+.+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~----~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~ 294 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGG----SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLD 294 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEE----EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCC----eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEE
Confidence 34577899999999999988865321 222233333 5566777888888 8888887554 4445532222222
Q ss_pred EeeccccCCeEEEEECCC----CC------EEEEEE---CCCeEEEEECCCCeE--EEEEecCC--CCeEEEEEeC-CCC
Q psy8748 1818 EVAQAHIGDVVSISLSPD----GQ------YFVTGS---VDKSCKLWDFREKKC--VQTFFGHE--ADVNSVCFHP-SGL 1879 (2004)
Q Consensus 1818 ~il~~h~~~ItsLafSPd----g~------~LaSGS---~DGsIrIWDlrs~k~--I~tl~~h~--s~ItsIafSP-dg~ 1879 (2004)
.+ ..-++|.++++.+. .. .+++++ .+|.+++..-.-+-. ........ ..++.+.... ++.
T Consensus 295 ~~--~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~ 372 (504)
T PF10433_consen 295 SL--PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHS 372 (504)
T ss_dssp EE------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBS
T ss_pred ec--cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCce
Confidence 22 44578888888531 11 455554 467888875321111 11222222 2233333222 245
Q ss_pred EEEEEECCCeEEEEEcc---CCceeEEEc---CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc-CC
Q psy8748 1880 AFATGSEDKTARLFDIR---ADQQIATYL---PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG-HE 1952 (2004)
Q Consensus 1880 ~LaSgS~DGtIrIWDLr---tgk~i~t~~---~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g-Hs 1952 (2004)
+++.+..+ .-+++.+. ....+.... .......+.+..+. +..++=.+.. .|++.+...++....... ..
T Consensus 373 ~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~ 448 (504)
T PF10433_consen 373 YLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAG 448 (504)
T ss_dssp EEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS
T ss_pred EEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCC
Confidence 66666654 45566553 233332221 11111122222222 4555555444 488888877777766533 34
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1953 NRVTSISLSPNGMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1953 ~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
..|.+.+. ++.+++.+-.+|.+..+.++....
T Consensus 449 ~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~ 480 (504)
T PF10433_consen 449 SIIVAASI--NDPQVLVALSGGELVYFELDDNKI 480 (504)
T ss_dssp ---SEEEE--SSSEEEEEE-TTEEEEEEEETTEE
T ss_pred CeEEEEEE--CCCEEEEEEeCCcEEEEEEECCce
Confidence 45555555 345677777789999999988754
|
... |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=87.49 E-value=27 Score=45.98 Aligned_cols=159 Identities=14% Similarity=0.184 Sum_probs=87.5
Q ss_pred ccccccceeEEEEeCCCCE-EEEEe--CCCeEEEEECCCCceEEEeeCCCCceEEEEEecC----CCEEEEeecCCeEEE
Q psy8748 1688 LKGHINKVNSVHYSGDSRH-CVSGS--LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQS----GNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~-LASGS--~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPd----g~~LaSGS~DGtIrV 1760 (2004)
|..--.+|..++|. ||+. +.|.- .+|.+++=| .+.+ +.-..|.++.|.|- ...+++.-....|.|
T Consensus 15 L~qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtV 86 (671)
T PF15390_consen 15 LHQAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTV 86 (671)
T ss_pred HHhhhccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEE
Confidence 33444688899996 5554 44432 123332211 1222 23345899999985 335556666788999
Q ss_pred EEcCCCCCCCcceEEEEEe-----cCccceeeeEEeCCCcEEEeecCCeE-EEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1761 YDLNNRDSTGAAKVIRELL-----GYEGFLSSCRFIDDTTLLTGSGDMKI-VTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~-----gh~~~Vssvafsdd~~LlSgS~DGtI-~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
|.+...... ..+...... ...---..+.|++..-+++.-....+ .++++.......+.--...+.|.|.+|.+
T Consensus 87 WqL~~s~~e-~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~ 165 (671)
T PF15390_consen 87 WQLCPSTTE-RNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK 165 (671)
T ss_pred EEeccCccc-cccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC
Confidence 998632111 111111111 11112345778877665544333333 44555544333333335678899999999
Q ss_pred CCCEEEEEECC-CeEEEEECCC
Q psy8748 1835 DGQYFVTGSVD-KSCKLWDFRE 1855 (2004)
Q Consensus 1835 dg~~LaSGS~D-GsIrIWDlrs 1855 (2004)
||+.++++-.. =.-+|||-..
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCch
Confidence 99988776433 2468888543
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=87.40 E-value=91 Score=39.31 Aligned_cols=199 Identities=12% Similarity=-0.004 Sum_probs=108.9
Q ss_pred CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccC
Q psy8748 1746 GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIG 1825 (2004)
Q Consensus 1746 g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~ 1825 (2004)
+..++++..+|.|...|.+++.......... ....+..-....++.+++++.+|.++.+|.++|+...........
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~----~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLG----AVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcC----cceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 3445555778878777777654221111111 111222222233677999999999999999888877655322200
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC---CCeEEEEEeCCCCEEEEEEC--CCeEEEEEccCCce
Q psy8748 1826 DVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE---ADVNSVCFHPSGLAFATGSE--DKTARLFDIRADQQ 1900 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~---s~ItsIafSPdg~~LaSgS~--DGtIrIWDLrtgk~ 1900 (2004)
.+..-.+- ....++.++.+|.+...|..+++......... ..+..--.. ....++.+.. ++.+.-.|..+|..
T Consensus 144 ~~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 144 YYASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred EEecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcE
Confidence 11111111 23344455578999999988888766643322 111111111 2234555555 66777888888877
Q ss_pred eEEEcCCCC--CCCe------EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC
Q psy8748 1901 IATYLPPNK--NSGF------TSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951 (2004)
Q Consensus 1901 i~t~~~~~~--~s~I------tsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH 1951 (2004)
......... ...+ ..-...-+ .-++.++.+|.+...|..+++.+......
T Consensus 222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 222 KWSQKVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 766321111 0111 11111112 22466777888999999999988887653
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=87.32 E-value=4.6 Score=55.65 Aligned_cols=143 Identities=16% Similarity=0.082 Sum_probs=91.5
Q ss_pred CCeEEEEECCCCCEEEEEE--CCCeEEEEECCCCeEE-----EEE------ecCCCCeEEEEEeCCCC-EEEEEECCCeE
Q psy8748 1825 GDVVSISLSPDGQYFVTGS--VDKSCKLWDFREKKCV-----QTF------FGHEADVNSVCFHPSGL-AFATGSEDKTA 1890 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSGS--~DGsIrIWDlrs~k~I-----~tl------~~h~s~ItsIafSPdg~-~LaSgS~DGtI 1890 (2004)
..+..+...+|+...++.. .+-.|..||++.-..- .-+ ........++.|.|.-. ..+++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4566666677766544443 3337899998753211 111 11223456788888532 36677789999
Q ss_pred EEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc----CCCCeEEEEEcCCCCE
Q psy8748 1891 RLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG----HENRVTSISLSPNGMA 1966 (2004)
Q Consensus 1891 rIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g----Hs~~VtsLaFSPDg~~ 1966 (2004)
++..+......... .......++++|+|.|+.+++|...|++.-|.. .++....+.. ...+|.+|+|-....+
T Consensus 181 ~V~~~~~~~~~v~s--~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTS--FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhcc--cCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeE
Confidence 99887643332222 133456899999999999999999999998875 3333333321 2468999999877776
Q ss_pred EEEE
Q psy8748 1967 LVTS 1970 (2004)
Q Consensus 1967 LaSg 1970 (2004)
+++-
T Consensus 258 lvvy 261 (1405)
T KOG3630|consen 258 LVVY 261 (1405)
T ss_pred EEEe
Confidence 6654
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=87.31 E-value=64 Score=38.36 Aligned_cols=92 Identities=12% Similarity=0.184 Sum_probs=63.7
Q ss_pred eEEEEECCCCCEEEEE-ECCCeEEEEE--CCCCe-----EEEEEec----CCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q psy8748 1827 VVSISLSPDGQYFVTG-SVDKSCKLWD--FREKK-----CVQTFFG----HEADVNSVCFHPSGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1827 ItsLafSPdg~~LaSG-S~DGsIrIWD--lrs~k-----~I~tl~~----h~s~ItsIafSPdg~~LaSgS~DGtIrIWD 1894 (2004)
-..++|+.+.+.++.. +.+-.|.-|| ..+|. .+..++. ..-..-.++...+|+..++.-..|+|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 4568898877766554 4556777787 44432 2333322 111233556677888888888899999999
Q ss_pred ccCCceeEEEcCCCCCCCeEEEEEcC
Q psy8748 1895 IRADQQIATYLPPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1895 Lrtgk~i~t~~~~~~~s~ItsLafSP 1920 (2004)
..+|+.+..+..+ ...+++++|--
T Consensus 240 p~tGK~L~eiklP--t~qitsccFgG 263 (310)
T KOG4499|consen 240 PTTGKILLEIKLP--TPQITSCCFGG 263 (310)
T ss_pred CCCCcEEEEEEcC--CCceEEEEecC
Confidence 9999999999766 46799999964
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=87.10 E-value=53 Score=43.03 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=96.6
Q ss_pred eCCCcEEEeecC-------CeEEEEECCCCceeEEeecc-ccC--Ce-EEEEECCCCCEEEEEECC-----CeEEEEECC
Q psy8748 1791 IDDTTLLTGSGD-------MKIVTWNLETGQRIHEVAQA-HIG--DV-VSISLSPDGQYFVTGSVD-----KSCKLWDFR 1854 (2004)
Q Consensus 1791 sdd~~LlSgS~D-------GtI~IWDl~tg~~i~~il~~-h~~--~I-tsLafSPdg~~LaSGS~D-----GsIrIWDlr 1854 (2004)
..+..++.|+.+ ..+..||+.+.+.......+ ... .. .+++. -++...+.|+.+ ..+.+||+.
T Consensus 174 ~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~-~~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 174 VGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVS-IGSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred ECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEE-ECCEEEEECCCCCCCCCccEEEEECC
Confidence 344455566642 34778898876543211110 111 01 11222 245666667654 358889988
Q ss_pred CCeEEEEEec---CC-CCeEEEEEeCCCCEEEEEECCC-----eEEEEEccCCceeEEEcC---CCCCCCeEEEEEcCCC
Q psy8748 1855 EKKCVQTFFG---HE-ADVNSVCFHPSGLAFATGSEDK-----TARLFDIRADQQIATYLP---PNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1855 s~k~I~tl~~---h~-s~ItsIafSPdg~~LaSgS~DG-----tIrIWDLrtgk~i~t~~~---~~~~s~ItsLafSPdG 1922 (2004)
+.+-...-.. .. ..-.+++ .-++++++.|+.++ .+..||+.+.+-...-.. +........+. -++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~g 329 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQG 329 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--ECC
Confidence 7543221110 01 1111222 23456666776543 367788776543211110 01111112222 357
Q ss_pred CEEEEEeCC----CeEEEEECCCCeeeEEEcc---CCCCeEEEEEcCCCCEEEEEECC--------------CeEEEEEC
Q psy8748 1923 RYIFCGSDD----NNVHVWDLLKTTHNGVLSG---HENRVTSISLSPNGMALVTSSWD--------------QFVKVWQE 1981 (2004)
Q Consensus 1923 ~~LaSGSsD----GsIrIWDL~tge~l~tL~g---Hs~~VtsLaFSPDg~~LaSgS~D--------------GtIrIWdl 1981 (2004)
++++.|+.+ ..+.+||..+.+-...-.. ...+...-+..-++++++.||.+ ..+.+||.
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~ 409 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT 409 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEc
Confidence 777777755 4589999877654332111 11111111222356777777753 24788888
Q ss_pred CCCeEEEEEEee
Q psy8748 1982 SNTIVWKVLKVY 1993 (2004)
Q Consensus 1982 stg~l~k~Ik~~ 1993 (2004)
.+. .|..+...
T Consensus 410 ~t~-~W~~~~~~ 420 (470)
T PLN02193 410 ETL-QWERLDKF 420 (470)
T ss_pred CcC-EEEEcccC
Confidence 876 48777643
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=86.73 E-value=9.9 Score=50.98 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=85.2
Q ss_pred cccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee-CCCCceEEEEEe--cCCCEEEEeecC
Q psy8748 1679 KVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP-LRSAWVMSVAFA--QSGNFVACGGMD 1755 (2004)
Q Consensus 1679 ~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~-~Ht~~ItsLafS--Pdg~~LaSGS~D 1755 (2004)
.+.|....++..-.....-+.-|.-++..++-+....+.|||...+....... ...+.|.++.|. |+|+.+++.|..
T Consensus 16 ~~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~ 95 (631)
T PF12234_consen 16 KIEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP 95 (631)
T ss_pred eEEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC
Confidence 34444455555555566666666656655555555679999998887554433 356789999995 588999999999
Q ss_pred CeEEEEEcCCCC---CCCcceEEEE--EecC-ccceeeeEEeCCCcEEEeecCCeEEEEECC
Q psy8748 1756 NMCTVYDLNNRD---STGAAKVIRE--LLGY-EGFLSSCRFIDDTTLLTGSGDMKIVTWNLE 1811 (2004)
Q Consensus 1756 GtIrVWDl~t~~---~~~~~k~i~s--l~gh-~~~Vssvafsdd~~LlSgS~DGtI~IWDl~ 1811 (2004)
+.|.+|.-...+ .......++. +..+ ...|.+..|.+++.+++|+. +.+.++|-.
T Consensus 96 ~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk~ 156 (631)
T PF12234_consen 96 HHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDKW 156 (631)
T ss_pred cEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECCC
Confidence 999998643211 1111222222 2223 36788899999988888774 467777643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.69 E-value=85 Score=38.23 Aligned_cols=240 Identities=14% Similarity=0.105 Sum_probs=132.1
Q ss_pred eEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCcee
Q psy8748 1737 VMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRI 1816 (2004)
Q Consensus 1737 ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i 1816 (2004)
-..++-.+||...+++...|.|--.|-.+++ ....-.+....-..+...+++....+.....|.-.|.++.+..
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGe------v~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt 137 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGE------VETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVT 137 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCc------eEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceE
Confidence 4556677777777777666666555554432 2222222222233333333333333222224555555544432
Q ss_pred EEe--eccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEE
Q psy8748 1817 HEV--AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG-HEADVNSVCFHPSGLAFATGSEDKTARLF 1893 (2004)
Q Consensus 1817 ~~i--l~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~-h~s~ItsIafSPdg~~LaSgS~DGtIrIW 1893 (2004)
.-. ............|++.|+.-+++.. |.---.|-.. ..+..+.. .......|+..|+|..-++.-.+..|-..
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiari 215 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARI 215 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEc
Confidence 111 1223445677889999987777652 2211112111 12333322 23456789999999988887788888888
Q ss_pred EccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEccCCCCeEEEEEcCCCCEEEEEEC
Q psy8748 1894 DIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT-HNGVLSGHENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1894 DLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge-~l~tL~gHs~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
|..++.....-...........+-.+|.|+.-++-...|.++.||-.+.. ....+.+...+-.++.....++.-.+--.
T Consensus 216 dp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~ 295 (353)
T COG4257 216 DPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEAD 295 (353)
T ss_pred ccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccc
Confidence 88777433332222324556677778889988887788888888865433 22334444445555666555555444444
Q ss_pred CCeEEEEECCCC
Q psy8748 1973 DQFVKVWQESNT 1984 (2004)
Q Consensus 1973 DGtIrIWdlstg 1984 (2004)
-|.|.-||-++.
T Consensus 296 agai~rfdpeta 307 (353)
T COG4257 296 AGAIGRFDPETA 307 (353)
T ss_pred cCceeecCcccc
Confidence 455666665554
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=86.46 E-value=72 Score=40.47 Aligned_cols=41 Identities=5% Similarity=0.101 Sum_probs=20.0
Q ss_pred CeEEEEECCCCceeEEeeccc-cCCeEEEEECCCCCEEEEEEC
Q psy8748 1803 MKIVTWNLETGQRIHEVAQAH-IGDVVSISLSPDGQYFVTGSV 1844 (2004)
Q Consensus 1803 GtI~IWDl~tg~~i~~il~~h-~~~ItsLafSPdg~~LaSGS~ 1844 (2004)
..+.+||..++.....-.... ...-.++... ++++.+.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence 358889988776542111111 1112233333 5666666664
|
|
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=85.70 E-value=1.8e+02 Score=40.99 Aligned_cols=240 Identities=10% Similarity=0.030 Sum_probs=124.0
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCce-------EE--EeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC---C
Q psy8748 1699 HYSGDSRHCVSGSLDGKLIIWDTWTGNK-------TQ--VIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN---R 1766 (2004)
Q Consensus 1699 aFSPDG~~LASGS~DGtIrVWDl~Tgk~-------l~--ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t---~ 1766 (2004)
.+-++...+++.+.+|.|+--+..+... .. .++ ....+..+........++..+..|.+....... .
T Consensus 491 dli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klK-e~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~ 569 (800)
T TIGR01063 491 DLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMK-DDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEA 569 (800)
T ss_pred hccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccC-CCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCC
Confidence 3446677788889999988776543211 11 112 233455555555666666677777665554422 1
Q ss_pred CCCCcceEE---EEEecCccceeeeE---EeCCCcEEEeecCCeEEEEECCCCceeEE-----eeccccCCeEEEEECCC
Q psy8748 1767 DSTGAAKVI---RELLGYEGFLSSCR---FIDDTTLLTGSGDMKIVTWNLETGQRIHE-----VAQAHIGDVVSISLSPD 1835 (2004)
Q Consensus 1767 ~~~~~~k~i---~sl~gh~~~Vssva---fsdd~~LlSgS~DGtI~IWDl~tg~~i~~-----il~~h~~~ItsLafSPd 1835 (2004)
.....+..+ ..+......+.++. +.++..++..+.+|.++-.++..-..... +.....+.+..+.....
T Consensus 570 ~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~~ 649 (800)
T TIGR01063 570 SRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTSG 649 (800)
T ss_pred CcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeCC
Confidence 111112211 12223333444444 33556789999999999887654221100 00011334444444444
Q ss_pred CCEEEEEECCCeEEEEECCC---------CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC-------Cc
Q psy8748 1836 GQYFVTGSVDKSCKLWDFRE---------KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA-------DQ 1899 (2004)
Q Consensus 1836 g~~LaSGS~DGsIrIWDlrs---------~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt-------gk 1899 (2004)
...++..+..|.+..+.... |.....+ .....|.++....++..++..+..|.++...+.. ++
T Consensus 650 ~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L-~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~k 728 (800)
T TIGR01063 650 DDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKL-KNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGK 728 (800)
T ss_pred CCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccC-CCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCc
Confidence 55677777788766665431 1111122 1234455555445555788888899888876532 11
Q ss_pred eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1900 QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1900 ~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
-...+........+..+....+...++..+.+|.+..++..
T Consensus 729 Gv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 729 GVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred ceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence 22222111212334343333444456666777777766654
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=85.70 E-value=94 Score=37.89 Aligned_cols=243 Identities=14% Similarity=0.041 Sum_probs=142.7
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
..-..++-.|||..-+++...|.|-=.|..+|+....--+....-..|...|||...++-+.. .|.-.|-++.+. .
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev---t 137 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV---T 137 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce---E
Confidence 345677888899888888777888888888888776655556667788888888877765443 344444433221 0
Q ss_pred eEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEE
Q psy8748 1773 KVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWD 1852 (2004)
+................|.+.+.+...+..|.---.|..++... .+.......-..|+..|+|..-++.-.++.|...|
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~-vfpaPqG~gpyGi~atpdGsvwyaslagnaiarid 216 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVIS-VFPAPQGGGPYGICATPDGSVWYASLAGNAIARID 216 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCcee-eeccCCCCCCcceEECCCCcEEEEeccccceEEcc
Confidence 11111222234455555665555444443333222232222211 11122344567888999999888777777888888
Q ss_pred CCCCeEEEEEe---cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1853 FREKKCVQTFF---GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1853 lrs~k~I~tl~---~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
..++.. ..+. .....-+.+--+|.|..-++....|.+..||-.+.. -..+..++....-.++.++..|+.-.+--
T Consensus 217 p~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea 294 (353)
T COG4257 217 PFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEA 294 (353)
T ss_pred cccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeecc
Confidence 766632 2221 112334555566778777777777888888876544 34444455555556677776666665544
Q ss_pred CCCeEEEEECCCC
Q psy8748 1930 DDNNVHVWDLLKT 1942 (2004)
Q Consensus 1930 sDGsIrIWDL~tg 1942 (2004)
..|.|.-+|-++.
T Consensus 295 ~agai~rfdpeta 307 (353)
T COG4257 295 DAGAIGRFDPETA 307 (353)
T ss_pred ccCceeecCcccc
Confidence 5566666665443
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=85.65 E-value=1e+02 Score=38.14 Aligned_cols=239 Identities=12% Similarity=0.044 Sum_probs=113.6
Q ss_pred CCCEEEEEeCCCeEEEEECCC--CceEEEeeCCCCceEEEEEecCCCEEEEee-cCCeEEEEEcCCCCCC----C-----
Q psy8748 1703 DSRHCVSGSLDGKLIIWDTWT--GNKTQVIPLRSAWVMSVAFAQSGNFVACGG-MDNMCTVYDLNNRDST----G----- 1770 (2004)
Q Consensus 1703 DG~~LASGS~DGtIrVWDl~T--gk~l~ti~~Ht~~ItsLafSPdg~~LaSGS-~DGtIrVWDl~t~~~~----~----- 1770 (2004)
++++|+.|+++|. .+-+... ++..+.+ +...|+++...+..+.+++-+ ....++++++..-... .
T Consensus 12 ~~~~lL~GTe~Gl-y~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGL-YVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCce-EEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 3468999999984 4445544 2333332 355799999998777665544 4456999998543210 0
Q ss_pred cceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEeec-------cccCCeEEEEECC--CCCEE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEVAQ-------AHIGDVVSISLSP--DGQYF 1839 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~il~-------~h~~~ItsLafSP--dg~~L 1839 (2004)
..+......++......+....+. .++++....+|.++............. ....++..+..++ ....+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 000011122222222222222222 345555666766654432211100011 1122333333333 25577
Q ss_pred EEEECCCeEEEEECCC--CeEEE----E-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1840 VTGSVDKSCKLWDFRE--KKCVQ----T-FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs--~k~I~----t-l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
.+|+..+...++++.. ...-. . .........++...+++.+++ +- |....+.|....+....... .....
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Ll-c~-~~~~v~Vn~~G~~~~r~~~l-~w~~~ 245 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLL-CY-DEFGVFVNLYGKRRSRNPIL-HWEFM 245 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEE-EE-CcEEEEEeCCCCccccceEE-EcCCc
Confidence 7887653344555432 11000 0 011110233344444554444 33 34455555542122111100 11233
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc
Q psy8748 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG 1950 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g 1950 (2004)
..++++. ..++++-+.+ .|.++++.+++.++.+..
T Consensus 246 p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 246 PESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred ccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEEec
Confidence 4566665 4666666544 499999999998888763
|
Unpublished observations. |
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=85.61 E-value=0.71 Score=61.44 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=53.9
Q ss_pred CeEEEEECC--CCce----eEEeeccccCCeEEEEECC---CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEE
Q psy8748 1803 MKIVTWNLE--TGQR----IHEVAQAHIGDVVSISLSP---DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVC 1873 (2004)
Q Consensus 1803 GtI~IWDl~--tg~~----i~~il~~h~~~ItsLafSP---dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIa 1873 (2004)
|.+.+||++ .|+. ..+........+.-+.|.| +.-++..+-.+|.|++........ ..+.+|...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 566777765 2332 2222333334445566655 556777888888888877654322 33445665555443
Q ss_pred -----------EeCCCCEEEEEECCCeEEEEEc
Q psy8748 1874 -----------FHPSGLAFATGSEDKTARLFDI 1895 (2004)
Q Consensus 1874 -----------fSPdg~~LaSgS~DGtIrIWDL 1895 (2004)
.+|||..|+.++.||.++.|.+
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 4677777777777777666654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=85.57 E-value=9.3 Score=49.97 Aligned_cols=150 Identities=11% Similarity=0.137 Sum_probs=88.7
Q ss_pred CCeEEEEECCCCCEEEEEE---CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC----CCEEEEEECCCeEEEEEccC
Q psy8748 1825 GDVVSISLSPDGQYFVTGS---VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPS----GLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSGS---~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPd----g~~LaSgS~DGtIrIWDLrt 1897 (2004)
.++..++|. ||+.++-.. .+|.+++=|- ..+ +.-..|.++.|.|- ...+.+......|.||.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 457888887 565544332 2344433321 223 33355889999984 33455566688999999752
Q ss_pred -----CceeEEEcCC---CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeeeEEEccCCCCeEEEEEcCCCCEE
Q psy8748 1898 -----DQQIATYLPP---NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK--TTHNGVLSGHENRVTSISLSPNGMAL 1967 (2004)
Q Consensus 1898 -----gk~i~t~~~~---~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t--ge~l~tL~gHs~~VtsLaFSPDg~~L 1967 (2004)
++........ ...---..+.|+|....+++-.....=.+++++. ......+ ...+.|.|.+|.+||+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEE
Confidence 2222111000 0000123578999999888776665545666643 2233333 457889999999999988
Q ss_pred EEEE-CCCeEEEEECCC
Q psy8748 1968 VTSS-WDQFVKVWQESN 1983 (2004)
Q Consensus 1968 aSgS-~DGtIrIWdlst 1983 (2004)
+.+- ..=.-+|||-..
T Consensus 171 VVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEeCCeEEEEEecCch
Confidence 7763 333567787543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=85.26 E-value=2 Score=38.54 Aligned_cols=34 Identities=12% Similarity=0.321 Sum_probs=30.0
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKT 1727 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l 1727 (2004)
..|.+++|+|...++|.|..+|.|.++.+ +++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 46999999999999999999999999998 55543
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=85.00 E-value=1e+02 Score=38.35 Aligned_cols=42 Identities=7% Similarity=0.068 Sum_probs=20.7
Q ss_pred CeEEEEECCCCceeEEeecccc-CCeEEEEECCCCCEEEEEECC
Q psy8748 1803 MKIVTWNLETGQRIHEVAQAHI-GDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1803 GtI~IWDl~tg~~i~~il~~h~-~~ItsLafSPdg~~LaSGS~D 1845 (2004)
..+..||..+++....-..... ..-.+++ ..++++.+.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeeee
Confidence 4688899887664421111111 1112222 2356777777653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=84.61 E-value=95 Score=37.38 Aligned_cols=200 Identities=14% Similarity=0.103 Sum_probs=103.2
Q ss_pred ceeeeEEeCCCc-EEEee---cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEE-CCCCeE
Q psy8748 1784 FLSSCRFIDDTT-LLTGS---GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWD-FREKKC 1858 (2004)
Q Consensus 1784 ~Vssvafsdd~~-LlSgS---~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWD-lrs~k~ 1858 (2004)
.+...+.+.+.. +++.. ....++++... ....... ....++.-.|++++...++...++..+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 455556664443 33333 33445555443 3222222 233678889999977666666566666663 233322
Q ss_pred E-EEEec--CCCCeEEEEEeCCCCEEEEEE---CCCeEEEEEccCCc-e-eEEE-----cCCCCCCCeEEEEEcCCCCEE
Q psy8748 1859 V-QTFFG--HEADVNSVCFHPSGLAFATGS---EDKTARLFDIRADQ-Q-IATY-----LPPNKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1859 I-~tl~~--h~s~ItsIafSPdg~~LaSgS---~DGtIrIWDLrtgk-~-i~t~-----~~~~~~s~ItsLafSPdG~~L 1925 (2004)
. ..... ....|..+.++|||..++... .++.|.+--+.... - ...+ ........++.+.|.+++.++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 1 11211 122899999999999877765 35677776543111 1 1111 111224578999999999988
Q ss_pred EEEeCCCe-EEE-EECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1926 FCGSDDNN-VHV-WDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1926 aSGSsDGs-IrI-WDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
+.+...+. +.. ... .+.....+..-...+.-++...+...++..+ ++.+ |....+..|+.+.
T Consensus 181 V~~~~~~~~~~~~v~~-dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~-~~~~--~~~~~~~~W~~v~ 244 (253)
T PF10647_consen 181 VLGRSAGGPVVRLVSV-DGGPSTPLPSVNLGVPVVAVAASPSTVYVTD-DGGV--LQSRSGASWREVP 244 (253)
T ss_pred EEeCCCCCceeEEEEc-cCCcccccCCCCCCcceEEeeCCCcEEEEEC-CCcE--EECCCCCcceEcc
Confidence 87765443 333 333 2222222222222233333333433444443 4433 3266666676654
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=84.34 E-value=2e+02 Score=40.57 Aligned_cols=238 Identities=11% Similarity=0.009 Sum_probs=123.1
Q ss_pred ecCCCEEEEeecCCeEEEEEcCCCCC---CCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECC---C----
Q psy8748 1743 AQSGNFVACGGMDNMCTVYDLNNRDS---TGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLE---T---- 1812 (2004)
Q Consensus 1743 SPdg~~LaSGS~DGtIrVWDl~t~~~---~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~---t---- 1812 (2004)
-++...+++.+.+|.|+-........ .........+.........+.....+.++..+..|.++..+.. .
T Consensus 493 i~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~ 572 (800)
T TIGR01063 493 IARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRT 572 (800)
T ss_pred cCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcC
Confidence 34456677778888888776543211 0001011111122222333334456668888888887766542 2
Q ss_pred --CceeEEeec-cccCC-eEEEEEC--CCCCEEEEEECCCeEEEEECCCCeE-------EEEEecCCCCeEEEEEeCCCC
Q psy8748 1813 --GQRIHEVAQ-AHIGD-VVSISLS--PDGQYFVTGSVDKSCKLWDFREKKC-------VQTFFGHEADVNSVCFHPSGL 1879 (2004)
Q Consensus 1813 --g~~i~~il~-~h~~~-ItsLafS--Pdg~~LaSGS~DGsIrIWDlrs~k~-------I~tl~~h~s~ItsIafSPdg~ 1879 (2004)
|..+..+.. ..... +.++.+. .++.+++..+.+|.++-.++..... ...+.. .+.+..+....+..
T Consensus 573 ~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~d 651 (800)
T TIGR01063 573 AKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGDD 651 (800)
T ss_pred CCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCCC
Confidence 111111111 11222 3344432 3556889999999999887653221 112222 34455554555555
Q ss_pred EEEEEECCCeEEEEEccCCc-------eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-------Ce--
Q psy8748 1880 AFATGSEDKTARLFDIRADQ-------QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK-------TT-- 1943 (2004)
Q Consensus 1880 ~LaSgS~DGtIrIWDLrtgk-------~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t-------ge-- 1943 (2004)
.++..+..|.+..+....-. -...... .....|.++..-.++.+++..+..|.++...+.. +.
T Consensus 652 ~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L-~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv 730 (800)
T TIGR01063 652 EVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKL-KNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGV 730 (800)
T ss_pred EEEEEECCCcEEEEEhhhcCCcCCCCCCeecccC-CCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcce
Confidence 67777778887766653211 1111111 1223355554444556788888999888876532 22
Q ss_pred eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1944 HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1944 ~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
....+....+.+..+....+...++..+.+|.+..+..+
T Consensus 731 ~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 731 KSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred EEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence 222233333455555554444556677778888777654
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=84.34 E-value=82 Score=45.16 Aligned_cols=144 Identities=10% Similarity=0.114 Sum_probs=94.8
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEE--------ecCCCEEEEeecCCeEEEEEcCCCCCCCcc---eEEEEEec
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF--------AQSGNFVACGGMDNMCTVYDLNNRDSTGAA---KVIRELLG 1780 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLaf--------SPdg~~LaSGS~DGtIrVWDl~t~~~~~~~---k~i~sl~g 1780 (2004)
-|+.+.+|+..++.....+.+-...|..+.. -|.=+++++.+.--.|.++-+...+..... .....+..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 4788999999998888888877777776654 222344444455556777765433221111 11123334
Q ss_pred CccceeeeEEeCCCcEEEeecCCeEEEEECC--CC---c-e----------------eEEeeccccCCeEEEEECCCCCE
Q psy8748 1781 YEGFLSSCRFIDDTTLLTGSGDMKIVTWNLE--TG---Q-R----------------IHEVAQAHIGDVVSISLSPDGQY 1838 (2004)
Q Consensus 1781 h~~~Vssvafsdd~~LlSgS~DGtI~IWDl~--tg---~-~----------------i~~il~~h~~~ItsLafSPdg~~ 1838 (2004)
....+.++.+.++++++.+|.||.|+-.-.. .| + + +..+...+..+|..+.++...+.
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~I 256 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNI 256 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccce
Confidence 4667888888888999999999955432221 11 1 0 01112255778999999998999
Q ss_pred EEEEECCCeEEEEECCC
Q psy8748 1839 FVTGSVDKSCKLWDFRE 1855 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlrs 1855 (2004)
+++-+..|+|.+||+..
T Consensus 257 lY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 257 LYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeccCceEEEEEccC
Confidence 99999999999999975
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=83.91 E-value=1.2e+02 Score=37.59 Aligned_cols=223 Identities=13% Similarity=0.077 Sum_probs=122.3
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECC------CC-ceEEEeeC-----CCCceEEEEEecCCC------------EE
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTW------TG-NKTQVIPL-----RSAWVMSVAFAQSGN------------FV 1749 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~------Tg-k~l~ti~~-----Ht~~ItsLafSPdg~------------~L 1749 (2004)
.-+.|+|+|.+.+-++....+...+||.. .. ..+.++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34689999999888877778899999985 12 22334442 234577888875433 36
Q ss_pred EEeecCCeEEEEEcCCCCCCCcceEEEEEe-c-CccceeeeEEe---CCCcEEE-eecCCeEEEEECCCCceeEEeeccc
Q psy8748 1750 ACGGMDNMCTVYDLNNRDSTGAAKVIRELL-G-YEGFLSSCRFI---DDTTLLT-GSGDMKIVTWNLETGQRIHEVAQAH 1823 (2004)
Q Consensus 1750 aSGS~DGtIrVWDl~t~~~~~~~k~i~sl~-g-h~~~Vssvafs---dd~~LlS-gS~DGtI~IWDl~tg~~i~~il~~h 1823 (2004)
+.++.||+|.-|...-......... .... . ....-..++.. .+++|++ --..++|.++|-.-.... .....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~-~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~--~~g~F 180 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAE-IVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP--LPGSF 180 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccE-EEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc--CCCCc
Confidence 7788999999998543211000011 1111 1 12222333333 1233333 335688888875432211 00000
Q ss_pred cC----------CeE---------EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeC------
Q psy8748 1824 IG----------DVV---------SISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF--GHEADVNSVCFHP------ 1876 (2004)
Q Consensus 1824 ~~----------~It---------sLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~--~h~s~ItsIafSP------ 1876 (2004)
.+ .|. -..-.+++..=+.|..-|.|-+||.. +..++++. +.-...+.|+..|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 00 111 11112222222233445789999974 66666662 2223456777765
Q ss_pred CCCEEEEEECCCeEEEEEccCCceeEEEcCCCC----CCCeEEEEEcC
Q psy8748 1877 SGLAFATGSEDKTARLFDIRADQQIATYLPPNK----NSGFTSCAVSS 1920 (2004)
Q Consensus 1877 dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~----~s~ItsLafSP 1920 (2004)
.+.+|+---.||+|..||..+++.+..+..... ...++.+.|..
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 456677666799999999999888776643322 12345666654
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=83.24 E-value=17 Score=49.23 Aligned_cols=145 Identities=9% Similarity=0.081 Sum_probs=89.2
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEE------EEe----------------cCCCCeEEEEEeC--CCCEEEEEECCCeEE
Q psy8748 1836 GQYFVTGSVDKSCKLWDFREKKCVQ------TFF----------------GHEADVNSVCFHP--SGLAFATGSEDKTAR 1891 (2004)
Q Consensus 1836 g~~LaSGS~DGsIrIWDlrs~k~I~------tl~----------------~h~s~ItsIafSP--dg~~LaSgS~DGtIr 1891 (2004)
+++++++. .+.|.||+.+...... .+. .....|+.|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56666655 6789999876322111 110 0112355554433 456789999999999
Q ss_pred EEEccC-------C----ce-e-----EEEcCCCCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEECCCC--eee-EEEc
Q psy8748 1892 LFDIRA-------D----QQ-I-----ATYLPPNKNSGFTSCAVS--SSGRYIFCGSDDNNVHVWDLLKT--THN-GVLS 1949 (2004)
Q Consensus 1892 IWDLrt-------g----k~-i-----~t~~~~~~~s~ItsLafS--PdG~~LaSGSsDGsIrIWDL~tg--e~l-~tL~ 1949 (2004)
+|.+++ . +. . .-+........++.++++ ...++||+++....|.||-.... +.. ..-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 997631 1 00 0 000011223467889998 78899999988888888865432 111 1112
Q ss_pred cCCCCeEEEEEcCCC-----C-EEEEEECCCeEEEEEC
Q psy8748 1950 GHENRVTSISLSPNG-----M-ALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1950 gHs~~VtsLaFSPDg-----~-~LaSgS~DGtIrIWdl 1981 (2004)
.|...|-+|+|-++. . .|++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 366789999996632 2 7888889999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.85 E-value=50 Score=43.49 Aligned_cols=271 Identities=15% Similarity=0.118 Sum_probs=138.9
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCC-CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS-AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht-~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
..+|..+.+.-+|. +..|+.|| +..||..+++..+.-.... ..|..+.-+-.| .+.+|+.+| |.+.+.+......
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 45788888887775 66677777 7778888888776554433 556555544444 566777777 6666654311100
Q ss_pred cceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccc--cCCeEEEEECCCCCEEEEEECCCeE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAH--IGDVVSISLSPDGQYFVTGSVDKSC 1848 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h--~~~ItsLafSPdg~~LaSGS~DGsI 1848 (2004)
.. ..-..+.|..+.-...+.+-.|+.+|..+.--.+.+-.. ...+.| -..|.++..+.+|+ +.+++.+|.+
T Consensus 240 ~~-----~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~-~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv 312 (671)
T COG3292 240 WG-----PMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQI-PLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIV 312 (671)
T ss_pred cC-----CCCcchheeeeecccCCCEEEeecccceeEecCCCCccc-cccccCCccccccceeeccCCC-EeeeccCceE
Confidence 00 001122333333334566777777775543322222221 111112 22355565555665 6777777766
Q ss_pred EEEECCCCeEEEEEecCCC-CeEEEEEeC--CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEE
Q psy8748 1849 KLWDFREKKCVQTFFGHEA-DVNSVCFHP--SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1849 rIWDlrs~k~I~tl~~h~s-~ItsIafSP--dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~L 1925 (2004)
++-+- .......+....+ .+...+..| .+..+.....-|.+.+-+-.++....... ......|+..++..+|+.
T Consensus 313 ~~~~a-~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~-q~Rg~nit~~~~d~~g~l- 389 (671)
T COG3292 313 RYLTA-DWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVH-QLRGMNITTTLEDSRGRL- 389 (671)
T ss_pred EEecc-hhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEee-eccccccchhhhccCCcE-
Confidence 65442 2222222222211 111112222 12222223333344444445555544421 222355777777775554
Q ss_pred EEEeCCCeEEEEECCC-CeeeEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEE
Q psy8748 1926 FCGSDDNNVHVWDLLK-TTHNGVLSG-HENRVTSISLSPNGMALVTSSWDQFVK 1977 (2004)
Q Consensus 1926 aSGSsDGsIrIWDL~t-ge~l~tL~g-Hs~~VtsLaFSPDg~~LaSgS~DGtIr 1977 (2004)
-.|+...-+..|+-.+ +.......+ ..++|..+.=.|+++ |..|+.+|.++
T Consensus 390 Wlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 390 WLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred EEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 4445543366666655 333333322 356788888888888 77788788554
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=82.59 E-value=1.5 Score=58.52 Aligned_cols=136 Identities=17% Similarity=0.190 Sum_probs=70.4
Q ss_pred CeEEEEECCCCce-EEEeeCCCCceEEEEEec-CCCEEEEeecCCeEEEEEcCCCCCCCcce-EEEEEecCccc---eee
Q psy8748 1714 GKLIIWDTWTGNK-TQVIPLRSAWVMSVAFAQ-SGNFVACGGMDNMCTVYDLNNRDSTGAAK-VIRELLGYEGF---LSS 1787 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~-l~ti~~Ht~~ItsLafSP-dg~~LaSGS~DGtIrVWDl~t~~~~~~~k-~i~sl~gh~~~---Vss 1787 (2004)
+.+++-+..+.-. ...+++..+.|-.+.|-. +...+. -.-|...||+++--+...... .+......... |..
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~w 188 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSW 188 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeee
Confidence 4455555433221 112345556666666632 111111 223667888876422111111 11222222222 333
Q ss_pred eEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEE-----------ECCCCCEEEEEECCCeEEEEEC
Q psy8748 1788 CRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSIS-----------LSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1788 vafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLa-----------fSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
+-|. ...++..+-.+|.|++.++++... .++.+|...++.++ .+|||..|+.+..||.++.|.+
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 3333 334566677788888887765443 34455766665544 5778888888888888777764
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=82.36 E-value=2.2e+02 Score=39.41 Aligned_cols=244 Identities=13% Similarity=0.015 Sum_probs=118.6
Q ss_pred CceEEEEEecCCCEEEEeecC-----CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEEeec-C-----
Q psy8748 1735 AWVMSVAFAQSGNFVACGGMD-----NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGSG-D----- 1802 (2004)
Q Consensus 1735 ~~ItsLafSPdg~~LaSGS~D-----GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSgS~-D----- 1802 (2004)
-.+..+.|+|+|++|+.+... ..|++.|+.++... ...+.+. -..+.|.+ ++.|+.+.. +
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-----~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-----PELLDNV---EPSFVWANDSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-----CccccCc---ceEEEEeeCCCEEEEEEecCCCCCC
Confidence 346778899999988775432 36778888654311 1111111 13467774 334444332 2
Q ss_pred CeEEEEECCCCce-eEEeeccccCCeE-EEEECCCCCEEEEEEC---CCeEEEEECC--CCeEEEEEecCCCCeEEEEEe
Q psy8748 1803 MKIVTWNLETGQR-IHEVAQAHIGDVV-SISLSPDGQYFVTGSV---DKSCKLWDFR--EKKCVQTFFGHEADVNSVCFH 1875 (2004)
Q Consensus 1803 GtI~IWDl~tg~~-i~~il~~h~~~It-sLafSPdg~~LaSGS~---DGsIrIWDlr--s~k~I~tl~~h~s~ItsIafS 1875 (2004)
..|+.+++.++.. ...++........ ....+.++++++..+. ++.+.+|+.. .+.....+.........+. +
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 277 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H 277 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e
Confidence 4788889988732 1123332222233 3344547887665543 3468888843 3332222222222222222 2
Q ss_pred CCCCEEEEEECC----CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEE--ECCCCeeeEEEc
Q psy8748 1876 PSGLAFATGSED----KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVW--DLLKTTHNGVLS 1949 (2004)
Q Consensus 1876 Pdg~~LaSgS~D----GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIW--DL~tge~l~tL~ 1949 (2004)
.. ..++.-+.. ..|...++........+........+..+.+. .+.++++...+|.-+++ +...+ ....+.
T Consensus 278 ~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~ 354 (686)
T PRK10115 278 YQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIA 354 (686)
T ss_pred CC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEec
Confidence 23 333333322 23444454421122233333233467777776 34555666667765554 44332 333333
Q ss_pred -cCCCCeEEEEEc--CCC-CEEEEEEC---CCeEEEEECCCCeEEEEEE
Q psy8748 1950 -GHENRVTSISLS--PNG-MALVTSSW---DQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1950 -gHs~~VtsLaFS--PDg-~~LaSgS~---DGtIrIWdlstg~l~k~Ik 1991 (2004)
.....+..+.++ +++ .++++.+. -+.+..||..+++ +..+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~-~~~l~ 402 (686)
T PRK10115 355 FDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE-RRVLK 402 (686)
T ss_pred CCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc-EEEEE
Confidence 222233334444 333 34444433 4778888988764 34443
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=81.99 E-value=53 Score=40.95 Aligned_cols=158 Identities=20% Similarity=0.343 Sum_probs=94.2
Q ss_pred cCCeEEEEECCCCCEEEEEECCCe------EEEEECCC--C--eEEE-----EEecCCC--------CeEEEEEeCCCCE
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVDKS------CKLWDFRE--K--KCVQ-----TFFGHEA--------DVNSVCFHPSGLA 1880 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~DGs------IrIWDlrs--~--k~I~-----tl~~h~s--------~ItsIafSPdg~~ 1880 (2004)
-+.+..+.+.+++..+++.+.+|. +..+++.. + ..+. .+....+ ..-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 456788899876667777777777 66665543 1 1111 1111111 3447888778877
Q ss_pred EEEEECC------CeEEEEEccCCceeEEEcC-------------CCCCCCeEEEEEcCCCCEEEEEeC-----CC--e-
Q psy8748 1881 FATGSED------KTARLFDIRADQQIATYLP-------------PNKNSGFTSCAVSSSGRYIFCGSD-----DN--N- 1933 (2004)
Q Consensus 1881 LaSgS~D------GtIrIWDLrtgk~i~t~~~-------------~~~~s~ItsLafSPdG~~LaSGSs-----DG--s- 1933 (2004)
+++.=.+ ..|..++.. |+....+.. ...+..+-.++++|+|+.|+++.. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7766556 678888876 665544421 123456889999999997766543 22 1
Q ss_pred ------EEE--EECCC-CeeeE----EEcc-----CCCCeEEEEEcCCCCEEEEEE-----CCCeEEEEECC
Q psy8748 1934 ------VHV--WDLLK-TTHNG----VLSG-----HENRVTSISLSPNGMALVTSS-----WDQFVKVWQES 1982 (2004)
Q Consensus 1934 ------IrI--WDL~t-ge~l~----tL~g-----Hs~~VtsLaFSPDg~~LaSgS-----~DGtIrIWdls 1982 (2004)
+++ ||..+ +.... .+.. ....|+.+.+-+++++|+-== ....++|+.+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45443 32222 2222 356799999999998766531 23456666544
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=81.93 E-value=22 Score=48.78 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=21.6
Q ss_pred cCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
...|..+.++++|.+++..|..| |.|..+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 34688899999999999988765 444433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=81.83 E-value=23 Score=48.09 Aligned_cols=104 Identities=12% Similarity=0.118 Sum_probs=71.3
Q ss_pred CCCcEEEeecCCeEEEEECCC-------C----ce-------eEEeeccccCCeEEEEEC--CCCCEEEEEECCCeEEEE
Q psy8748 1792 DDTTLLTGSGDMKIVTWNLET-------G----QR-------IHEVAQAHIGDVVSISLS--PDGQYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1792 dd~~LlSgS~DGtI~IWDl~t-------g----~~-------i~~il~~h~~~ItsLafS--Pdg~~LaSGS~DGsIrIW 1851 (2004)
....++++.+||.|.+|..++ . .. ...+.......+++++++ ...++||+++....|.+|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 556789999999999996521 1 00 001222344578999998 788899999988888887
Q ss_pred ECCCC--eE-EEEEecCCCCeEEEEEeCCC---C---EEEEEECCCeEEEEEc
Q psy8748 1852 DFREK--KC-VQTFFGHEADVNSVCFHPSG---L---AFATGSEDKTARLFDI 1895 (2004)
Q Consensus 1852 Dlrs~--k~-I~tl~~h~s~ItsIafSPdg---~---~LaSgS~DGtIrIWDL 1895 (2004)
-.... +. ...-..+...|.+|+|.++. . ++++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 65431 11 11111356789999998743 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=81.74 E-value=12 Score=51.98 Aligned_cols=130 Identities=13% Similarity=0.071 Sum_probs=82.6
Q ss_pred EEeecCCeEEEEECCCCceeE----E------eeccccCCeEEEEECCCC-CEEEEEECCCeEEEEECCCCeEEEEEecC
Q psy8748 1797 LTGSGDMKIVTWNLETGQRIH----E------VAQAHIGDVVSISLSPDG-QYFVTGSVDKSCKLWDFREKKCVQTFFGH 1865 (2004)
Q Consensus 1797 lSgS~DGtI~IWDl~tg~~i~----~------il~~h~~~ItsLafSPdg-~~LaSGS~DGsIrIWDlrs~k~I~tl~~h 1865 (2004)
+..+.+-.|..||+++-..-. . ..........++.|+|.- ...++...|+.|++..+........-...
T Consensus 118 ~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~ 197 (1405)
T KOG3630|consen 118 VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPV 197 (1405)
T ss_pred EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCc
Confidence 334445578999987532211 1 111223446678888843 24566778899998877644332222244
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCC--CCCCeEEEEEcCCCCEEEE
Q psy8748 1866 EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN--KNSGFTSCAVSSSGRYIFC 1927 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~--~~s~ItsLafSPdG~~LaS 1927 (2004)
....+|++|+|.|+.++.|-..|++.-|... +.....+..+. ....|.+++|-....++++
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 5678999999999999999999999999754 33222322111 1367889999877766664
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=81.56 E-value=14 Score=47.46 Aligned_cols=144 Identities=17% Similarity=0.241 Sum_probs=88.4
Q ss_pred CCCEEE-EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCC-------EEEEEECCCeEEEEEccC-CceeEEEc
Q psy8748 1835 DGQYFV-TGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL-------AFATGSEDKTARLFDIRA-DQQIATYL 1905 (2004)
Q Consensus 1835 dg~~La-SGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~-------~LaSgS~DGtIrIWDLrt-gk~i~t~~ 1905 (2004)
+..+++ .|+....++-.|+..|+.+..+..|..- -+.|.|+.+ .-++|-.+..|.-.|.+- |..+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 334333 3455567888888888888888776654 466766432 123444566666666553 22222111
Q ss_pred CC--CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1906 PP--NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1906 ~~--~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
.. .......+..- ....|+++|+..|.|++||.-.-.....+.+-...|..+..+.+|+++++.+. ..+.+-|+.
T Consensus 556 sKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 11 11122233322 34568999999999999996544444556777889999999999998777663 456666654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2004 | ||||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 1e-96 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 3e-96 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 3e-96 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 6e-96 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 6e-96 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-72 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 1e-61 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-28 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 7e-19 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-24 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-14 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-24 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-14 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 9e-23 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 7e-14 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 9e-23 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-14 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 9e-23 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-14 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-22 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 9e-14 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-22 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-14 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-22 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 9e-14 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-22 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 8e-14 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-22 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-14 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-22 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-13 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-22 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-13 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 4e-22 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 7e-14 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-21 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-13 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-21 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 3e-21 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-21 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-13 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 8e-21 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-13 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 9e-21 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-13 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 5e-18 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 3e-12 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 5e-18 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-12 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-17 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-13 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-17 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 4e-16 | ||
| 3j38_g | 318 | Structure Of The D. Melanogaster 40s Ribosomal Prot | 3e-16 | ||
| 3j38_g | 318 | Structure Of The D. Melanogaster 40s Ribosomal Prot | 2e-13 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 4e-16 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-15 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 4e-15 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-12 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 5e-15 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 6e-15 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 3e-12 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-15 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-12 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-15 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-12 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-14 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-12 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-14 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 4e-06 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-14 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-06 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-14 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-14 | ||
| 4j79_A | 301 | Crystal Structure Of Beta'-cop/pedvspike Complex Le | 5e-14 | ||
| 4j73_A | 301 | Crystal Structure Of Beta'-cop/p25 Complex Length = | 5e-14 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 1e-13 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-13 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-13 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-12 | ||
| 3j2t_A | 1263 | An Improved Model Of The Human Apoptosome Length = | 2e-13 | ||
| 3j2t_A | 1263 | An Improved Model Of The Human Apoptosome Length = | 3e-06 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 7e-13 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 3e-08 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 5e-12 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 9e-05 | ||
| 4jsp_D | 326 | Structure Of Mtordeltan-mlst8-atpgammas-mg Complex | 1e-11 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-11 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-11 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-11 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 7e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 4e-11 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 8e-11 | ||
| 4jxm_A | 371 | Crystal Structure Of Rrp9 Wd40 Repeats Length = 371 | 1e-10 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 1e-10 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-10 | ||
| 4j0w_A | 343 | Structure Of U3-55k Length = 343 | 2e-10 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-10 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-10 | ||
| 4j87_A | 327 | Crystal Structure Of Alpha-cop Length = 327 | 3e-10 | ||
| 4bh6_B | 308 | Insights Into Degron Recognition By Apc Coactivator | 2e-08 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 3e-08 | ||
| 3mmy_A | 368 | Structural And Functional Analysis Of The Interacti | 9e-08 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 1e-07 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 2e-07 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 2e-07 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 2e-06 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 4e-06 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 3e-04 | ||
| 1pi6_A | 615 | Yeast Actin Interacting Protein 1 (Aip1), Orthorhom | 4e-04 | ||
| 4e54_B | 435 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 4e-04 | ||
| 4e5z_B | 436 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 4e-04 | ||
| 3ei4_B | 436 | Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | 5e-04 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 8e-04 |
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3J38|GG Chain g, Structure Of The D. Melanogaster 40s Ribosomal Proteins Length = 318 | Back alignment and structure |
|
| >pdb|3J38|GG Chain g, Structure Of The D. Melanogaster 40s Ribosomal Proteins Length = 318 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|4J79|A Chain A, Crystal Structure Of Beta'-cop/pedvspike Complex Length = 301 | Back alignment and structure |
|
| >pdb|4J73|A Chain A, Crystal Structure Of Beta'-cop/p25 Complex Length = 301 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3J2T|A Chain A, An Improved Model Of The Human Apoptosome Length = 1263 | Back alignment and structure |
|
| >pdb|3J2T|A Chain A, An Improved Model Of The Human Apoptosome Length = 1263 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|4JSP|D Chain D, Structure Of Mtordeltan-mlst8-atpgammas-mg Complex Length = 326 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|4JXM|A Chain A, Crystal Structure Of Rrp9 Wd40 Repeats Length = 371 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|4J87|A Chain A, Crystal Structure Of Alpha-cop Length = 327 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435 | Back alignment and structure |
|
| >pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436 | Back alignment and structure |
|
| >pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2004 | |||
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.98 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.98 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.94 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.94 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.93 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.93 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.93 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.92 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.88 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.86 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.85 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.85 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.85 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.85 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.84 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.84 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.84 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.84 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.83 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.83 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.82 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.82 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.8 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.8 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.8 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.79 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.78 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.77 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.76 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.75 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.74 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.74 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.72 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.71 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.71 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.7 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.7 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.68 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.66 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.64 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.64 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.64 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.63 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.62 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.61 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.6 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.6 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.59 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.59 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.59 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.57 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.56 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.53 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.5 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.49 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.48 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.46 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.46 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.45 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.45 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.42 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.41 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.4 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.4 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.39 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.37 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.37 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.36 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.35 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.31 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.3 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.29 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.29 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.28 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.28 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.25 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.23 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.21 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.21 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.17 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.14 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.11 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.11 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.1 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.1 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.09 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.07 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.07 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.04 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.04 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.02 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.02 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.01 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.01 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.01 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.99 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.95 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.93 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.92 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.89 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.85 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.84 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.83 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.81 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.8 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.77 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.77 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.73 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.72 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.67 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.64 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.63 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.63 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.59 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.57 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.54 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.49 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.43 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.41 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.37 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.36 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.35 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.34 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.34 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.34 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.3 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.3 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.26 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.26 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.22 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.21 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.19 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.18 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.15 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.1 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.03 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.02 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.98 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.97 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.95 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.87 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.86 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.85 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.84 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.83 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.8 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.76 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.74 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.72 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.67 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.66 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.64 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.63 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.62 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.6 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.54 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.54 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.52 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.5 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.49 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.46 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.46 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.45 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.42 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.36 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.21 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.21 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.21 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.18 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.16 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.15 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.13 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.03 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.03 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.99 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.95 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.94 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.92 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.88 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.87 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.85 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.85 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.78 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.75 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.72 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.71 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.69 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.64 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.58 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.54 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.49 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.31 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.26 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.18 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.18 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.17 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.17 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.99 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.95 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 95.87 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.81 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.61 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.56 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.51 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.28 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.03 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 94.96 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.9 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.81 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 94.59 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 94.56 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.14 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.88 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.63 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.18 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 92.07 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 91.55 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 91.52 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 90.41 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 90.26 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 88.91 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 88.19 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 88.1 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 87.85 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 87.51 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 87.41 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 87.2 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 86.65 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 86.18 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 85.93 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 85.82 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 85.65 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 81.61 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 81.59 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 80.82 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 80.4 |
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=394.92 Aligned_cols=301 Identities=51% Similarity=0.980 Sum_probs=279.2
Q ss_pred CCcccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCC
Q psy8748 1677 APKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN 1756 (2004)
Q Consensus 1677 ~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG 1756 (2004)
..........++.+|.+.|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|+++++++|+.||
T Consensus 40 ~~~~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 119 (340)
T 1got_B 40 VGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp CCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred cccccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence 33445667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
.|++|++.... ........+.+|.+.+.++.|.+++.+++++.||.|++||+.+++... .+.+|.+.|.+++|+|++
T Consensus 120 ~v~iw~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 120 ICSIYNLKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT-TFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp EEEEEETTTCS--BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTS
T ss_pred eEEEEECccCC--CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEE-EEcCCCCceEEEEECCCC
Confidence 99999997643 233566778899999999999998999999999999999999998774 457899999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
+++++|+.||.|++||++++..+..+.+|...|.+++|+|++++|++|+.||+|++||+++++....+....+...+.++
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999888877655555689999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1917 AVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
+|+|+|+++++|+.||.|++||+.+++....+.+|.+.|.+++|+|+|.+|++|+.||.|++||
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=426.02 Aligned_cols=395 Identities=17% Similarity=0.211 Sum_probs=303.9
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|...|++++|||+|++||+ |+.||+|+|||+.+. .......+.++...+ ..+.++|++
T Consensus 56 ~~h~~~v~~~~~spdg~~las-g~~d~~v~lWd~~~~-----------~~~~~~~~~~~~~~v--------~~v~fs~dg 115 (611)
T 1nr0_A 56 TEHSHQTTVAKTSPSGYYCAS-GDVHGNVRIWDTTQT-----------THILKTTIPVFSGPV--------KDISWDSES 115 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEE-EETTSEEEEEESSST-----------TCCEEEEEECSSSCE--------EEEEECTTS
T ss_pred cCCCCceEEEEECCCCcEEEE-EeCCCCEEEeECCCC-----------cceeeEeecccCCce--------EEEEECCCC
Confidence 468889999999999999999 999999999998650 011223444443332 234456655
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCC-EEEEE
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSR-HCVSG 1710 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~-~LASG 1710 (2004)
..-...... ..........+ .......+.+|.+.|++++|+|++. .|++|
T Consensus 116 ~~l~~~~~~------------------~~~~~~v~~wd-----------~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~ 166 (611)
T 1nr0_A 116 KRIAAVGEG------------------RERFGHVFLFD-----------TGTSNGNLTGQARAMNSVDFKPSRPFRIISG 166 (611)
T ss_dssp CEEEEEECC------------------SSCSEEEEETT-----------TCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred CEEEEEECC------------------CCceeEEEEee-----------CCCCcceecCCCCCceEEEECCCCCeEEEEE
Confidence 311100000 00000000000 1123456889999999999999987 69999
Q ss_pred eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEe-------cCcc
Q psy8748 1711 SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELL-------GYEG 1783 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~-------gh~~ 1783 (2004)
+.|++|++||..+++....+.+|...|.+++|+|++++|++|+.||.|++||+.++. ....+. +|.+
T Consensus 167 s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~------~~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 167 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT------KTGVFEDDSLKNVAHSG 240 (611)
T ss_dssp ETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------EEEECBCTTSSSCSSSS
T ss_pred eCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc------EeeeeccccccccccCC
Confidence 999999999999999999999999999999999999999999999999999987643 233332 7899
Q ss_pred ceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEE------------------------------------------ee
Q psy8748 1784 FLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHE------------------------------------------VA 1820 (2004)
Q Consensus 1784 ~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~------------------------------------------il 1820 (2004)
.|.+++|+++ ..+++++.|+.|++||+.+++.... ..
T Consensus 241 ~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~ 320 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR 320 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEE
Confidence 9999999965 4689999999999999998765432 23
Q ss_pred ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEE-e------------------------------------
Q psy8748 1821 QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF-F------------------------------------ 1863 (2004)
Q Consensus 1821 ~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl-~------------------------------------ 1863 (2004)
.+|...|++++|+|+|++|++++.||.|++||+.++.....+ .
T Consensus 321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~ 400 (611)
T 1nr0_A 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 400 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSS
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccc
Confidence 478889999999999999999999999999998765432221 0
Q ss_pred ---------------------------------------------cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCC
Q psy8748 1864 ---------------------------------------------GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRAD 1898 (2004)
Q Consensus 1864 ---------------------------------------------~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtg 1898 (2004)
.|...+.+++|+|+|+++++|+.||+|++||+.++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~ 480 (611)
T 1nr0_A 401 DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 480 (611)
T ss_dssp CTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETT
T ss_pred cccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCC
Confidence 12345778999999999999999999999999876
Q ss_pred ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEE--EccCCCCeEEEEEcCCCCEEEEEECCCe
Q psy8748 1899 QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK-TTHNGV--LSGHENRVTSISLSPNGMALVTSSWDQF 1975 (2004)
Q Consensus 1899 k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t-ge~l~t--L~gHs~~VtsLaFSPDg~~LaSgS~DGt 1975 (2004)
....... ..|...|++++|+|+|++|++++.|++|++||+.+ ++.... +.+|...|.+++|+|||++|++|+.||+
T Consensus 481 ~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~ 559 (611)
T 1nr0_A 481 SVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 559 (611)
T ss_dssp EEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCc
Confidence 5422222 35668899999999999999999999999999987 665543 3459999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEEeecCC-CCccccc
Q psy8748 1976 VKVWQESNTIVWKVLKVYNLE-KKTIFCV 2003 (2004)
Q Consensus 1976 IrIWdlstg~l~k~Ik~~~~h-~~~VtsV 2003 (2004)
|++|++.++... .+.....| ...|+++
T Consensus 560 v~lW~~~~~~~~-~~~~~~~h~~~~v~~v 587 (611)
T 1nr0_A 560 VIVWNMNKPSDH-PIIIKGAHAMSSVNSV 587 (611)
T ss_dssp EEEEETTCTTSC-CEEETTSSTTSCEEEE
T ss_pred EEEEECCCcccc-cchhhccCcccCeeEE
Confidence 999999876421 12445677 6777765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=384.49 Aligned_cols=337 Identities=41% Similarity=0.733 Sum_probs=291.0
Q ss_pred HHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECC
Q psy8748 1643 ELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTW 1722 (2004)
Q Consensus 1643 ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~ 1722 (2004)
.++.+...+...+.+.+............................|.||.+.|++++|+|++++|++|+.||+|++||..
T Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~ 94 (354)
T 2pbi_B 15 SLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF 94 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHTTTSCCCCCCCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccHHHhccCCccccccccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 34445555555555544444333333333333334445566778999999999999999999999999999999999999
Q ss_pred CCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeec
Q psy8748 1723 TGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSG 1801 (2004)
Q Consensus 1723 Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~ 1801 (2004)
+++....+..|...|.+++|+|++..+++|+.|+.+++|++..............+.+|...+.++.|.+++ .+++++.
T Consensus 95 ~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~ 174 (354)
T 2pbi_B 95 TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174 (354)
T ss_dssp TCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred CCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC
Confidence 999999999999999999999999999999999999999997654333334456677899999999999655 6999999
Q ss_pred CCeEEEEECCCCceeEEeeccccCCeEEEEECC--CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCC
Q psy8748 1802 DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP--DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL 1879 (2004)
Q Consensus 1802 DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP--dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~ 1879 (2004)
||.|++||+++++.+.. +.+|...|.+++|+| ++++|++|+.||.|++||+++++++..+.+|...|.+++|+|++.
T Consensus 175 D~~v~lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~ 253 (354)
T 2pbi_B 175 DGTCALWDVESGQLLQS-FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD 253 (354)
T ss_dssp TSEEEEEETTTCCEEEE-EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCcEEEEeCCCCeEEEE-EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC
Confidence 99999999999987744 468999999999988 578999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEE
Q psy8748 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSIS 1959 (2004)
Q Consensus 1880 ~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLa 1959 (2004)
+|++|+.||+|++||+++++....+........+.+++|+|+|+++++|+.||.|++||+.+++.+..+.+|.+.|++++
T Consensus 254 ~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~ 333 (354)
T 2pbi_B 254 AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLR 333 (354)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEE
Confidence 99999999999999999988877776555556789999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEE
Q psy8748 1960 LSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1960 FSPDg~~LaSgS~DGtIrIWd 1980 (2004)
|+|+|++|++|+.||+|++|+
T Consensus 334 ~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 334 VSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECTTSSCEEEEETTSEEEEEC
T ss_pred ECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999995
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-38 Score=405.29 Aligned_cols=335 Identities=19% Similarity=0.290 Sum_probs=280.4
Q ss_pred CCCCCCCeEEEEEccCCC-EEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1551 PEPCKEQRNAVSFHACST-LLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk-~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
...|...|++++|+|+|. +||+ |+.|++|++||..+ ++
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s-~s~D~~v~lwd~~~-------------~~--------------------------- 181 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIIS-GSDDNTVAIFEGPP-------------FK--------------------------- 181 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEE-EETTSCEEEEETTT-------------BE---------------------------
T ss_pred ecCCCCCceEEEECCCCCeEEEE-EeCCCeEEEEECCC-------------Ce---------------------------
Confidence 456999999999999997 5998 99999999999755 11
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVS 1709 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LAS 1709 (2004)
....+.+|.+.|++++|+|+|++|++
T Consensus 182 ------------------------------------------------------~~~~l~~H~~~V~~v~fspdg~~las 207 (611)
T 1nr0_A 182 ------------------------------------------------------FKSTFGEHTKFVHSVRYNPDGSLFAS 207 (611)
T ss_dssp ------------------------------------------------------EEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ------------------------------------------------------EeeeeccccCceEEEEECCCCCEEEE
Confidence 12345679999999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEee-------CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC------------
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIP-------LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG------------ 1770 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~-------~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~------------ 1770 (2004)
|+.||+|++||+.+++....+. +|.+.|.+++|+|++++|++++.|+.|++||+.+++...
T Consensus 208 ~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~ 287 (611)
T 1nr0_A 208 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ 287 (611)
T ss_dssp EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCcccee
Confidence 9999999999999999988884 799999999999999999999999999999998653211
Q ss_pred -------------------------cceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeec---
Q psy8748 1771 -------------------------AAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQ--- 1821 (2004)
Q Consensus 1771 -------------------------~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~--- 1821 (2004)
.......+.+|...+.+++|+++ ..+++++.||.|++||+.++........
T Consensus 288 ~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~ 367 (611)
T 1nr0_A 288 LGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA 367 (611)
T ss_dssp EEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS
T ss_pred EEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCc
Confidence 01133456689999999999865 5689999999999999987643211100
Q ss_pred ------------------------------------------------------------------------------cc
Q psy8748 1822 ------------------------------------------------------------------------------AH 1823 (2004)
Q Consensus 1822 ------------------------------------------------------------------------------~h 1823 (2004)
.|
T Consensus 368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~ 447 (611)
T 1nr0_A 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 447 (611)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence 12
Q ss_pred cCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE--EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC-Cce
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC--VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA-DQQ 1900 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~--I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt-gk~ 1900 (2004)
...+.+++|+|+|+++++|+.||.|++||+..+.. ... .+|...|.+++|+|+|++|++++.|++|++||+.+ ++.
T Consensus 448 ~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 448 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred CCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCce
Confidence 34578899999999999999999999999987653 233 68999999999999999999999999999999987 444
Q ss_pred eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-ee-EEEccC-CCCeEEEEEcCCCCEEEEEECCCeEE
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT-HN-GVLSGH-ENRVTSISLSPNGMALVTSSWDQFVK 1977 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge-~l-~tL~gH-s~~VtsLaFSPDg~~LaSgS~DGtIr 1977 (2004)
........|...|.+++|+|+|++|++|+.||+|++||+.++. .. ..+.+| .+.|.+++|+|++. |++|+.||+|+
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~ 605 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIK 605 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEE
T ss_pred eeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEE
Confidence 3321223477899999999999999999999999999998765 33 567789 89999999999998 99999999999
Q ss_pred EEECC
Q psy8748 1978 VWQES 1982 (2004)
Q Consensus 1978 IWdls 1982 (2004)
+|++.
T Consensus 606 lW~~~ 610 (611)
T 1nr0_A 606 FWNVP 610 (611)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99973
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=375.75 Aligned_cols=285 Identities=17% Similarity=0.264 Sum_probs=256.4
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
..+|.+.|++++|+|++++|++|+.||.|++|| .+++....+..|...|.+++|+|+++++++++.||.|++|++.++
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~- 181 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG- 181 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT-
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC-
Confidence 356889999999999999999999999999999 788899999999999999999999999999999999999999754
Q ss_pred CCCcceEEEEEecCccc---------------eeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEE
Q psy8748 1768 STGAAKVIRELLGYEGF---------------LSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~---------------Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf 1832 (2004)
.....+..+... +.++.|.+++.+++++.+|.|++||+.+++.... ...|...|.+++|
T Consensus 182 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~-~~~~~~~i~~~~~ 255 (425)
T 1r5m_A 182 -----TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGK-LIGHHGPISVLEF 255 (425)
T ss_dssp -----EEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEE-ECCCSSCEEEEEE
T ss_pred -----cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeee-eccCCCceEEEEE
Confidence 344455555554 8899999999999999999999999999877644 4688999999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1833 SPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1833 SPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
+|+++++++++.||.|++||+++++.+..+..|...|.+++|+|++ ++++++.||.|++||+++++.+..+. .+...
T Consensus 256 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~ 332 (425)
T 1r5m_A 256 NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI--VDGVP 332 (425)
T ss_dssp ETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE--CTTCC
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc--cCCcc
Confidence 9999999999999999999999999889998999999999999999 99999999999999999998887774 45578
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--------------------eeEEEccCCC--CeEEEEEcCCCCEEEEE
Q psy8748 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT--------------------HNGVLSGHEN--RVTSISLSPNGMALVTS 1970 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsDGsIrIWDL~tge--------------------~l~tL~gHs~--~VtsLaFSPDg~~LaSg 1970 (2004)
+.+++|+|++++|++|+.||.|++||+.+++ .+..+.+|.. .|++++|+|++++|+++
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence 9999999999999999999999999998888 8889999976 99999999999999999
Q ss_pred ECCCeEEEEECCC
Q psy8748 1971 SWDQFVKVWQESN 1983 (2004)
Q Consensus 1971 S~DGtIrIWdlst 1983 (2004)
+.||.|++|++++
T Consensus 413 ~~dg~i~iw~~~g 425 (425)
T 1r5m_A 413 YSLQEGSVVAIPG 425 (425)
T ss_dssp ESSSCCEEEECCC
T ss_pred ecCceEEEEeecC
Confidence 9999999999863
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=391.53 Aligned_cols=359 Identities=26% Similarity=0.428 Sum_probs=297.2
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
..|...|++++|+|+|++|++ |+.||+|++||... +....+.++...+.. +.+.|++
T Consensus 218 ~~~~~~v~~~~~s~dg~~l~~-~~~d~~i~~w~~~~--------------~~~~~~~~~~~~v~~--------v~~~~d~ 274 (577)
T 2ymu_A 218 TGHSSSVRGVAFSPDGQTIAS-ASDDKTVKLWNRNG--------------QLLQTLTGHSSSVNG--------VAFRPDG 274 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEE-EETTSCEEEECTTS--------------CEEEEECCCSSCEEE--------EEECTTS
T ss_pred ecCCCCEEEEEECCCCCEEEE-EeCCCEEEEEeCCC--------------CEEEEEecCCCCEEE--------EEEcCCC
Confidence 347889999999999999999 99999999999644 344555555443332 2234443
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
..-... ..+. .-............+.+|.+.|++++|+|+++++++++
T Consensus 275 ~~l~~~-----------------------------~~d~---~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~ 322 (577)
T 2ymu_A 275 QTIASA-----------------------------SDDK---TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 322 (577)
T ss_dssp SEEEEE-----------------------------ETTS---CEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CEEEEE-----------------------------eCCC---EEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEe
Confidence 210000 0000 00000112234567889999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.||.|++||.. +..+..+..|...|.+++|+|+++++++|+.||.|++|+.. ......+.+|...+.+++|+
T Consensus 323 ~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-------~~~~~~~~~~~~~v~~~~~s 394 (577)
T 2ymu_A 323 DDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFS 394 (577)
T ss_dssp TTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-------CCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-------CCEEEEecCCCCCeEEEEEC
Confidence 99999999964 55667788999999999999999999999999999999964 24567788899999999998
Q ss_pred CC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeE
Q psy8748 1792 DD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVN 1870 (2004)
Q Consensus 1792 dd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~It 1870 (2004)
++ ..+++++.|+.|++||.. ++.. ....+|...|++++|+|+++++++++.||.|++||. +++.+..+.+|...|.
T Consensus 395 ~dg~~l~~~~~d~~v~~~~~~-~~~~-~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~ 471 (577)
T 2ymu_A 395 PDGQTIASASDDKTVKLWNRN-GQLL-QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVR 471 (577)
T ss_dssp TTSSCEEEEETTSEEEEECTT-CCEE-EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEE
T ss_pred CCCCEEEEEeCCCEEEEEeCC-CCEE-EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEE
Confidence 65 568899999999999964 4444 445689999999999999999999999999999996 5677888999999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc
Q psy8748 1871 SVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG 1950 (2004)
Q Consensus 1871 sIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g 1950 (2004)
+++|+|+++++++++.|+.|++||. +++.+..+. .|...|++++|+|+|++|++|+.||.|++||. +++++..+.+
T Consensus 472 ~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~ 547 (577)
T 2ymu_A 472 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 547 (577)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC
Confidence 9999999999999999999999995 577777774 56688999999999999999999999999995 7889999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1951 HENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1951 Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
|.+.|++++|+|||++|+|++.||+|++||
T Consensus 548 h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 548 HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999999999999999997
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-38 Score=385.53 Aligned_cols=290 Identities=26% Similarity=0.426 Sum_probs=270.0
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
....+.+|.++|++++|+|+++++++|+.||+|++||+.+++....+.+|.+.|.+++|+|++++|++|+.||.|++||+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
.+. .....+.+|...|.++.|.++ ..+++|+.||.|++||+.++..+.. +.+|...|.++.+++++.++++|
T Consensus 180 ~~~------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~-~~~h~~~v~~~~~~~~g~~l~s~ 252 (410)
T 1vyh_C 180 QGF------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-FTGHREWVRMVRPNQDGTLIASC 252 (410)
T ss_dssp TSS------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEECTTSSEEEEE
T ss_pred CCC------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-EeCCCccEEEEEECCCCCEEEEE
Confidence 753 466778899999999999965 5699999999999999999988744 46899999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC--------------------CCEEEEEECCCeEEEEEccCCceeE
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPS--------------------GLAFATGSEDKTARLFDIRADQQIA 1902 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPd--------------------g~~LaSgS~DGtIrIWDLrtgk~i~ 1902 (2004)
+.||.|++||+++++....+.+|...|.+++|+|+ |.++++|+.||.|++||++++..+.
T Consensus 253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~ 332 (410)
T 1vyh_C 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332 (410)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 99999999999999999999999999999999996 6789999999999999999999888
Q ss_pred EEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
.+. +|...|.+++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||+|++|++.
T Consensus 333 ~~~--~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 333 TLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEE--CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEE--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 874 566789999999999999999999999999999999999999999999999999999999999999999999863
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=382.60 Aligned_cols=305 Identities=41% Similarity=0.758 Sum_probs=270.6
Q ss_pred cccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1681 KLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1681 k~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
...+.++|.||.+.|++++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+|+++++++|+.|+.|++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCC-CCcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEe----eccccCCeEEEEEC
Q psy8748 1761 YDLNNRDS-TGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEV----AQAHIGDVVSISLS 1833 (2004)
Q Consensus 1761 WDl~t~~~-~~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~i----l~~h~~~ItsLafS 1833 (2004)
|++..... .........+.+|.+.+.++.|.++ ..+++|+.|+.|++||+.+++.+..+ ..+|...|.+++|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 99975321 1122334567789999999999864 46999999999999999999877544 15788999999998
Q ss_pred C-CCCEEEEEECCCeEEEEECC-CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCC--
Q psy8748 1834 P-DGQYFVTGSVDKSCKLWDFR-EKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNK-- 1909 (2004)
Q Consensus 1834 P-dg~~LaSGS~DGsIrIWDlr-s~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~-- 1909 (2004)
+ +++++++|+.||.|++||++ .+..+..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+.....
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 7 88999999999999999998 4577888999999999999999999999999999999999999998887754322
Q ss_pred ---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE----ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1910 ---NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVL----SGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1910 ---~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL----~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
...+++++|+|+|+++++|+.||.|++||+.+++....+ .+|.+.|++++|+|+|.+|++|+.||+|++|++.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 234889999999999999999999999999999988877 6899999999999999999999999999999998
Q ss_pred CCe
Q psy8748 1983 NTI 1985 (2004)
Q Consensus 1983 tg~ 1985 (2004)
+.+
T Consensus 375 ~~~ 377 (380)
T 3iz6_a 375 GHR 377 (380)
T ss_dssp SSS
T ss_pred CCc
Confidence 753
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=386.35 Aligned_cols=371 Identities=26% Similarity=0.433 Sum_probs=309.0
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCc
Q psy8748 1553 PCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSS 1632 (2004)
Q Consensus 1553 ~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgS 1632 (2004)
.|...|.++.|+|+|++|++ |+.||+|++||... +....+.++...+.. +.+.+++.
T Consensus 178 ~~~~~v~~~~~~~~~~~l~~-~~~d~~v~~w~~~~--------------~~~~~~~~~~~~v~~--------~~~s~dg~ 234 (577)
T 2ymu_A 178 GHSSSVWGVAFSPDGQTIAS-ASDDKTVKLWNRNG--------------QLLQTLTGHSSSVRG--------VAFSPDGQ 234 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEE-EETTSEEEEECTTS--------------CEEEEEECCSSCEEE--------EEECTTSS
T ss_pred CCCcceeeeeecCCCCEEEE-EcCCCEEEEEeCCC--------------cEEEEEecCCCCEEE--------EEECCCCC
Confidence 47778999999999999999 99999999999644 344555554443322 23344431
Q ss_pred c------hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCE
Q psy8748 1633 I------NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRH 1706 (2004)
Q Consensus 1633 i------di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~ 1706 (2004)
. +..+..| ....+....+.+|...|++++|+|++++
T Consensus 235 ~l~~~~~d~~i~~w--------------------------------------~~~~~~~~~~~~~~~~v~~v~~~~d~~~ 276 (577)
T 2ymu_A 235 TIASASDDKTVKLW--------------------------------------NRNGQLLQTLTGHSSSVNGVAFRPDGQT 276 (577)
T ss_dssp CEEEEETTSCEEEE--------------------------------------CTTSCEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEEeCCCEEEEE--------------------------------------eCCCCEEEEEecCCCCEEEEEEcCCCCE
Confidence 1 0000011 1122345678899999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcccee
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vs 1786 (2004)
+++++.|+.|++||. +++....+.+|...|.+++|+|+++.+++++.||.|++|+... .....+.+|...+.
T Consensus 277 l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-------~~~~~~~~~~~~v~ 348 (577)
T 2ymu_A 277 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-------QHLQTLTGHSSSVW 348 (577)
T ss_dssp EEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-------CEEEEECCCSSCEE
T ss_pred EEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-------CeeEEEeCCCCCEE
Confidence 999999999999995 6778888999999999999999999999999999999999854 34566788999999
Q ss_pred eeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecC
Q psy8748 1787 SCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH 1865 (2004)
Q Consensus 1787 svafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h 1865 (2004)
+++|+++ ..+++++.||.|++||.. ++.+ ....+|...|.+++|+|++++|++++.||.|++||. +++.+..+.+|
T Consensus 349 ~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~ 425 (577)
T 2ymu_A 349 GVAFSPDGQTIASASDDKTVKLWNRN-GQLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH 425 (577)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETT-CCEE-EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEcCC-CCEE-EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCC
Confidence 9999865 568889999999999964 4544 345689999999999999999999999999999995 56778889999
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1866 EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
...|.+++|+|+++++++++.|+.|++||.. ++.+..+. .+...+.+++|+|+|++|++++.||.|++||. +++.+
T Consensus 426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~--~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~ 501 (577)
T 2ymu_A 426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL 501 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEE--CCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEE
T ss_pred CCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEE
Confidence 9999999999999999999999999999964 56666663 56688999999999999999999999999995 78899
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1946 GVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1946 ~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
..+.+|...|++++|+|+|++|++++.||.|++||..+ + .++.+..|.+.|+++
T Consensus 502 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~-~---~~~~~~~h~~~v~~~ 555 (577)
T 2ymu_A 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q---LLQTLTGHSSSVWGV 555 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-C---EEEEEECCSSCEEEE
T ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC-C---EEEEEcCCCCCEEEE
Confidence 99999999999999999999999999999999999754 3 355567888888775
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=360.33 Aligned_cols=289 Identities=23% Similarity=0.338 Sum_probs=262.2
Q ss_pred cccccccccceeEEEEeCC----CCEEEEEeCCCeEEEEECCCCce--EEEeeCCCCceEEEEEecCCCEEEEeecCCeE
Q psy8748 1685 KKSLKGHINKVNSVHYSGD----SRHCVSGSLDGKLIIWDTWTGNK--TQVIPLRSAWVMSVAFAQSGNFVACGGMDNMC 1758 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPD----G~~LASGS~DGtIrVWDl~Tgk~--l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtI 1758 (2004)
.+.+.+|.+.|++++|+|+ +.+|++|+.||+|+|||+.+++. ...+.+|...|.+++|++++..+++++.||.|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 4567899999999999974 66999999999999999887754 44678999999999999999999999999999
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~ 1837 (2004)
++||+.++ +....+..+...+.++.|+++ ..+++++.+|.|++||+++++.... ...+...|.+++|+|+++
T Consensus 105 ~lWd~~~~------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~-~~~~~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 105 RLWDLENG------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS-LDTRGKFILSIAYSPDGK 177 (321)
T ss_dssp EEEETTTT------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE-EECSSSCEEEEEECTTSS
T ss_pred EEEECCCC------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE-ecCCCceEEEEEECCCCC
Confidence 99999754 456677788888899999865 4688899999999999999887744 456788899999999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEE
Q psy8748 1838 YFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1838 ~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLa 1917 (2004)
+|++|+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++|+.||.|++||+++++....+ ..|...|.+++
T Consensus 178 ~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~ 255 (321)
T 3ow8_A 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL--SGHASWVLNVA 255 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE--CCCSSCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE--cCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999888777 45678899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1918 VSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1918 fSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
|+|+|++|++|+.||+|++||+.+++++..+.+|.+.|.+++|+|++.+|++++.||.|++||..
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999963
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=353.36 Aligned_cols=294 Identities=20% Similarity=0.332 Sum_probs=263.2
Q ss_pred ccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1682 LMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1682 ~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
....+++.+|.+.|++++|+|++++|++|+.||+|++||+.++..+..+..|..+|.+++|+|+++++++|+.||.|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC-CCCEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP-DGQYF 1839 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP-dg~~L 1839 (2004)
|+.++ .....+.+|...|.+++|++++ .+++|+.||.|++||++++......+.+|...|.+++|+| ++..|
T Consensus 83 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 83 NYNTG------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp ETTTC------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred ECCCC------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE
Confidence 99764 4567788999999999999654 6889999999999999988777677789999999999999 67899
Q ss_pred EEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeC--CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1840 VTGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHP--SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs~k~I~tl~-~h~s~ItsIafSP--dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
++|+.||.|++||++++.....+. +|...+..+.|+| ++.++++|+.||+|++||+++++++..+. .|...|.++
T Consensus 157 ~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~--~h~~~v~~~ 234 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFA 234 (304)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC--CCCCCEEEE
Confidence 999999999999998876655544 5667899999987 77899999999999999999999888874 566889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCC
Q psy8748 1917 AVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM--ALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~--~LaSgS~DGtIrIWdlstg 1984 (2004)
+|+|++++|++|+.||+|++||+.+++....+..|...+.+++|+|++. ++++|+.|| +.+|++.+.
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 9999999999999999999999999999999999999999999999875 577777555 788888764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=369.45 Aligned_cols=286 Identities=24% Similarity=0.393 Sum_probs=259.8
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..+|+++|++++|+|+|.+||+ |+.||+|+|||+.+ ++
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s-~s~Dg~i~vwd~~~-------------~~---------------------------- 141 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVS-ASEDATIKVWDYET-------------GD---------------------------- 141 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEE-EESSSCEEEEETTT-------------CC----------------------------
T ss_pred ecccCCcEEEEEEcCCCCEEEE-EeCCCeEEEEECCC-------------Cc----------------------------
Confidence 4569999999999999999999 99999999999877 11
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
....+.+|.+.|++++|+|++++|++|
T Consensus 142 -----------------------------------------------------~~~~l~~h~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 142 -----------------------------------------------------FERTLKGHTDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp -----------------------------------------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred -----------------------------------------------------EEEEEeccCCcEEEEEEcCCCCEEEEE
Confidence 123466899999999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE
Q psy8748 1711 SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf 1790 (2004)
+.||+|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||.|++||+.++ .....+.+|...+.++.+
T Consensus 169 s~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~------~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG------YCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEE
T ss_pred eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------cEEEEEeCCCccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999764 456778899999999999
Q ss_pred eCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC--------------------CCEEEEEECCCeEE
Q psy8748 1791 IDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD--------------------GQYFVTGSVDKSCK 1849 (2004)
Q Consensus 1791 sdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd--------------------g~~LaSGS~DGsIr 1849 (2004)
.++ ..+++|+.||.|++||+.+++... .+.+|...|.+++|+|+ +.++++|+.||.|+
T Consensus 243 ~~~g~~l~s~s~D~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 243 NQDGTLIASCSNDQTVRVWVVATKECKA-ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCceee-EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence 865 468899999999999999988774 45789999999999996 67899999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1850 IWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
+||++++.++..+.+|...|.+++|+|+|++|++|+.||.|++||+.+++.+..+. .|...|++++|+|++.+|++|+
T Consensus 322 iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTGS 399 (410)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--CCSSCEEEEEECSSSSCEEEEE
T ss_pred EEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCCcEEEEEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999888874 5667899999999999999999
Q ss_pred CCCeEEEEECC
Q psy8748 1930 DDNNVHVWDLL 1940 (2004)
Q Consensus 1930 sDGsIrIWDL~ 1940 (2004)
.||+|++|+++
T Consensus 400 ~D~~i~vW~~r 410 (410)
T 1vyh_C 400 VDQTVKVWECR 410 (410)
T ss_dssp TTSEEEEEC--
T ss_pred CCCcEEEEeCC
Confidence 99999999863
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=343.14 Aligned_cols=294 Identities=25% Similarity=0.472 Sum_probs=262.6
Q ss_pred ccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1682 LMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1682 ~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
+.....+.+|.+.|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++++|++|+.||.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
|++++ .....+.+|...+.++.|.++ ..+++|+.||.|++||+++++... .+..|...|.+++|+|++++++
T Consensus 93 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 93 DVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK-TLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp ETTTC------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEE
T ss_pred ECCCC------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE-EecCCCCcEEEEEEcCCCCEEE
Confidence 99754 456778889999999999865 568899999999999999988774 4467889999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEE-E
Q psy8748 1841 TGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCA-V 1918 (2004)
Q Consensus 1841 SGS~DGsIrIWDlrs~k~I~tl~-~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLa-f 1918 (2004)
+|+.||.|++||+++++.+..+. .+...+.+++|+|+++++++++.||.|++||+++++....+..+.......... .
T Consensus 166 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred EEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 99999999999999998877764 456789999999999999999999999999999999888875443332223333 4
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECC
Q psy8748 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSS--WDQFVKVWQES 1982 (2004)
Q Consensus 1919 SPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS--~DGtIrIWdls 1982 (2004)
.+++.++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++.++++++ .||.|++|+.+
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred eCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 46889999999999999999999999999999999999999999999999997 69999999975
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=370.39 Aligned_cols=399 Identities=15% Similarity=0.188 Sum_probs=302.2
Q ss_pred CCCCCCC-eEEEEEcc--CCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCcccccccc
Q psy8748 1551 PEPCKEQ-RNAVSFHA--CSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMM 1627 (2004)
Q Consensus 1551 ~e~Hk~~-VtsVsFSP--dGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~ 1627 (2004)
...|... |++++|+| +|++||+ |+.||+|++||+.+. .............+.++...+ ..+.+
T Consensus 59 ~~~h~~~~v~~~~~sp~~~~~~l~s-~~~dg~v~vw~~~~~-----~~~~~~~~~~~~~~~~~~~~v--------~~~~~ 124 (615)
T 1pgu_A 59 FTGHGSSVVTTVKFSPIKGSQYLCS-GDESGKVIVWGWTFD-----KESNSVEVNVKSEFQVLAGPI--------SDISW 124 (615)
T ss_dssp ECTTTTSCEEEEEECSSTTCCEEEE-EETTSEEEEEEEEEE-----GGGTEEEEEEEEEEECCSSCE--------EEEEE
T ss_pred EecCCCceEEEEEECcCCCCCEEEE-ecCCCEEEEEeCCCC-----cccccccccccchhhcccccE--------EEEEE
Confidence 3458889 99999999 9999999 999999999999750 000000124444554433332 23344
Q ss_pred CCCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCC-E
Q psy8748 1628 KPTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSR-H 1706 (2004)
Q Consensus 1628 spdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~-~ 1706 (2004)
++++..-...... ......... .. .......+.+|.+.|++++|+|+++ .
T Consensus 125 s~~~~~l~~~~~~------------------~~~~~~v~~-------~d----~~~~~~~~~~~~~~v~~~~~~~~~~~~ 175 (615)
T 1pgu_A 125 DFEGRRLCVVGEG------------------RDNFGVFIS-------WD----SGNSLGEVSGHSQRINACHLKQSRPMR 175 (615)
T ss_dssp CTTSSEEEEEECC------------------SSCSEEEEE-------TT----TCCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred eCCCCEEEEeccC------------------CCCccEEEE-------EE----CCCcceeeecCCccEEEEEECCCCCcE
Confidence 5554211100000 000000000 00 1224567889999999999999998 8
Q ss_pred EEEEeCCCeEEEEECCCCceEEEeeCCCC---ceEEEEEecC-CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEE-e--
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVIPLRSA---WVMSVAFAQS-GNFVACGGMDNMCTVYDLNNRDSTGAAKVIREL-L-- 1779 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~---~ItsLafSPd-g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl-~-- 1779 (2004)
+++++.||.|++||+.+++....+..|.. .|.+++|+|+ ++++++++.||.|++||+.++ +....+ .
T Consensus 176 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~ 249 (615)
T 1pgu_A 176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG------EFLKYIEDDQ 249 (615)
T ss_dssp EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC------CEEEECCBTT
T ss_pred EEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC------CEeEEecccc
Confidence 99999999999999999999999999999 9999999999 999999999999999999754 344555 4
Q ss_pred -cCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeecc---ccCCeEEEEECCCCCEEEEEECCCeEEEEECCC
Q psy8748 1780 -GYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA---HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855 (2004)
Q Consensus 1780 -gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~---h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs 1855 (2004)
+|...+.++.|.++..+++++.||.|++||+.+++....+... +...+.++.|. +++++++++.||.|++||+.+
T Consensus 250 ~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 250 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred cccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence 7899999999995567999999999999999998877555322 24678888886 899999999999999999998
Q ss_pred CeEEEEEecCCCCeEEEEEeCC---------------------------------CCEEEEEEC----------------
Q psy8748 1856 KKCVQTFFGHEADVNSVCFHPS---------------------------------GLAFATGSE---------------- 1886 (2004)
Q Consensus 1856 ~k~I~tl~~h~s~ItsIafSPd---------------------------------g~~LaSgS~---------------- 1886 (2004)
++.+..+.+|...|.+++| |+ +..+++++.
T Consensus 329 ~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~ 407 (615)
T 1pgu_A 329 DEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGS 407 (615)
T ss_dssp EEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSS
T ss_pred CcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccC
Confidence 8888887777666665555 33 334444444
Q ss_pred ----------------------------------------------------------CCeEEEEEccCCceeEEEcCCC
Q psy8748 1887 ----------------------------------------------------------DKTARLFDIRADQQIATYLPPN 1908 (2004)
Q Consensus 1887 ----------------------------------------------------------DGtIrIWDLrtgk~i~t~~~~~ 1908 (2004)
||.|++||+.+++... .....
T Consensus 408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~ 486 (615)
T 1pgu_A 408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTP 486 (615)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-ECSSC
T ss_pred CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-cccCC
Confidence 4444444444433322 33456
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc-CCCCeEEEEEcC----------CCCEEEEEECCCeEE
Q psy8748 1909 KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG-HENRVTSISLSP----------NGMALVTSSWDQFVK 1977 (2004)
Q Consensus 1909 ~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g-Hs~~VtsLaFSP----------Dg~~LaSgS~DGtIr 1977 (2004)
+...+++++|+|+|++|++|+.||.|++||+.+++.+..+.+ |...|++++|+| ++++|++|+.||.|+
T Consensus 487 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~ 566 (615)
T 1pgu_A 487 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 566 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEE
Confidence 678899999999999999999999999999999999999888 999999999999 999999999999999
Q ss_pred EEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1978 VWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1978 IWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
+|++.++. +.+..+..|.+.|+++
T Consensus 567 iw~~~~~~--~~~~~~~~h~~~v~~l 590 (615)
T 1pgu_A 567 IYSVKRPM--KIIKALNAHKDGVNNL 590 (615)
T ss_dssp EEESSCTT--CCEEETTSSTTCEEEE
T ss_pred EEECCCCc--eechhhhcCccceEEE
Confidence 99999873 3355677888888775
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=349.90 Aligned_cols=286 Identities=24% Similarity=0.357 Sum_probs=256.3
Q ss_pred CCCCCCeEEEEEccC----CCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCcccccccc
Q psy8748 1552 EPCKEQRNAVSFHAC----STLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMM 1627 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPd----Gk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~ 1627 (2004)
..|.+.|++++|+|+ +++||| |+.||+|+||++.. .+.
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~t-gs~D~~v~vW~~~~-------------~~~------------------------ 70 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVT-GSLDDLVKVWKWRD-------------ERL------------------------ 70 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEE-EETTSCEEEEEEET-------------TEE------------------------
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEE-EcCCCCEEEEECCC-------------CCe------------------------
Confidence 469999999999985 679999 99999999999866 110
Q ss_pred CCCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEE
Q psy8748 1628 KPTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHC 1707 (2004)
Q Consensus 1628 spdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~L 1707 (2004)
.....+.+|...|.+++|++++.++
T Consensus 71 -------------------------------------------------------~~~~~l~gh~~~v~~~~~~~~~~~l 95 (321)
T 3ow8_A 71 -------------------------------------------------------DLQWSLEGHQLGVVSVDISHTLPIA 95 (321)
T ss_dssp -------------------------------------------------------EEEEEECCCSSCEEEEEECSSSSEE
T ss_pred -------------------------------------------------------eeeeeeccCCCCEEEEEECCCCCEE
Confidence 0122466899999999999999999
Q ss_pred EEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceee
Q psy8748 1708 VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787 (2004)
Q Consensus 1708 ASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vss 1787 (2004)
++|+.||+|++||+.+++.+..+..|...+.+++|+|+++++++|+.||.|++|+++.+ .....+..+...+.+
T Consensus 96 ~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~------~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG------KKEYSLDTRGKFILS 169 (321)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC------SEEEEEECSSSCEEE
T ss_pred EEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC------ceeEEecCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999764 345566778889999
Q ss_pred eEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC
Q psy8748 1788 CRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE 1866 (2004)
Q Consensus 1788 vafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~ 1866 (2004)
++|+++ ..+++|+.||.|++||+.+++.+.. +.+|...|.+++|+|++++|++|+.||.|++||+++++....+.+|.
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 248 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHT-LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence 999865 4688999999999999999987744 57899999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1867 ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1867 s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
..|.+++|+|++.+|++++.||+|++||+++++++..+. .|...|.+++|+|+|++|++++.||.|++||.
T Consensus 249 ~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF--DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc--CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999999999999999999999999988884 56688999999999999999999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-35 Score=342.25 Aligned_cols=287 Identities=22% Similarity=0.340 Sum_probs=254.1
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
..|.+.|++++|||+|++||+ |+.||+|++||+.+ +..
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s-~~~dg~v~lWd~~~-------------~~~---------------------------- 47 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLT-TLYSGRVELWNYET-------------QVE---------------------------- 47 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEE-EETTSEEEEEETTT-------------TEE----------------------------
T ss_pred cCCCCceEEEEECCCCCEEEE-EcCCCcEEEEECCC-------------Cce----------------------------
Confidence 358889999999999999999 99999999999877 221
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
...+.+|..+|.+++|+|++++|++|+
T Consensus 48 -----------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~s~s 74 (304)
T 2ynn_A 48 -----------------------------------------------------VRSIQVTETPVRAGKFIARKNWIIVGS 74 (304)
T ss_dssp -----------------------------------------------------EEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred -----------------------------------------------------eEEeeccCCcEEEEEEeCCCCEEEEEC
Confidence 223456888999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.||+|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||.|++||++++ ......+.+|...+.+++|+
T Consensus 75 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-----~~~~~~~~~h~~~v~~v~~~ 149 (304)
T 2ynn_A 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-----WALEQTFEGHEHFVMCVAFN 149 (304)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT-----TEEEEEECCCCSCEEEEEEC
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC-----cchhhhhcccCCcEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999753 24556788999999999998
Q ss_pred C--CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC--CCCEEEEEECCCeEEEEECCCCeEEEEEecCCC
Q psy8748 1792 D--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP--DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA 1867 (2004)
Q Consensus 1792 d--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP--dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s 1867 (2004)
+ +..+++|+.||.|++||+.++........++...+..+.|+| ++.++++|+.||.|++||+++++++..+.+|..
T Consensus 150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~ 229 (304)
T 2ynn_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229 (304)
T ss_dssp TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC
Confidence 6 356999999999999999988777666667778899999987 778999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCC
Q psy8748 1868 DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR--YIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1868 ~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~--~LaSGSsDGsIrIWDL~t 1941 (2004)
.|.+++|+|++.+|++|+.||+|++||+.+++....+. .+...+.+++++|++. ++++|+.|| +.+|++.+
T Consensus 230 ~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN--VGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC--CSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc--CCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 99999999999999999999999999999999988884 4557899999999875 577776555 77887754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=338.20 Aligned_cols=293 Identities=23% Similarity=0.385 Sum_probs=254.9
Q ss_pred cccccccccccceeEEEEeCC-CCEEEEEeCCCeEEEEECCCCc-----eEEEeeCCCCceEEEEEecCCCEEEEeecCC
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGD-SRHCVSGSLDGKLIIWDTWTGN-----KTQVIPLRSAWVMSVAFAQSGNFVACGGMDN 1756 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPD-G~~LASGS~DGtIrVWDl~Tgk-----~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG 1756 (2004)
....+|+||++.|++|+|+|+ +++|+|||.||+|+|||+.+++ ....+.+|...|.+++|+|+++++++|+.||
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 345679999999999999997 6899999999999999987653 4567889999999999999999999999999
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD 1835 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd 1835 (2004)
.|++|+.... ........+...+....+.+ +..+++++.||.+++||............+|...+.+++|+++
T Consensus 109 ~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 109 TLRLWDLTTG------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp EEEEEETTTT------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred cceEEeeccc------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 9999998753 44455556666777777764 5568999999999999998877766667789999999999886
Q ss_pred C--CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCe
Q psy8748 1836 G--QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGF 1913 (2004)
Q Consensus 1836 g--~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~I 1913 (2004)
+ .++++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.. ...+
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v 259 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDII 259 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---SSCE
T ss_pred CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC---CceE
Confidence 4 5788999999999999999999999999999999999999999999999999999999999998887743 3579
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc---------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1914 TSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS---------GHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1914 tsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~---------gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
.+++|+|++.++ +++.||.|++||++++..+..+. +|...|++++|+|+|++|++|+.||.|+|||+.+|
T Consensus 260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 999999988755 45579999999999887776653 68899999999999999999999999999999987
Q ss_pred e
Q psy8748 1985 I 1985 (2004)
Q Consensus 1985 ~ 1985 (2004)
.
T Consensus 339 t 339 (340)
T 4aow_A 339 T 339 (340)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=350.42 Aligned_cols=299 Identities=21% Similarity=0.281 Sum_probs=253.4
Q ss_pred ccccccccccc-ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE---EeeCCCCceEEEEEecCCCEEEEeecCCeE
Q psy8748 1683 MPKKSLKGHIN-KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQ---VIPLRSAWVMSVAFAQSGNFVACGGMDNMC 1758 (2004)
Q Consensus 1683 ~pi~sL~GHt~-~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~---ti~~Ht~~ItsLafSPdg~~LaSGS~DGtI 1758 (2004)
.....+.+|.+ .|++++|+|+|++||+|+.||+|+|||+.++.... ...+|...|.+++|+|++++|++|+.||.|
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 45678889988 99999999999999999999999999998876432 236799999999999999999999999999
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCcee--EEeeccccCCeEEEEECCC
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRI--HEVAQAHIGDVVSISLSPD 1835 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i--~~il~~h~~~ItsLafSPd 1835 (2004)
++|++... .......+.+|...|.+++|+++ ..+++|+.||.|++||+.++... .....+|...|.+++|+|+
T Consensus 86 ~iw~~~~~----~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 161 (345)
T 3fm0_A 86 CIWKKNQD----DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS 161 (345)
T ss_dssp EEEEECCC-----EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred EEEEccCC----CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence 99998754 34566788899999999999965 56899999999999999876532 3446789999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc--------------
Q psy8748 1836 GQYFVTGSVDKSCKLWDFREKK--CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ-------------- 1899 (2004)
Q Consensus 1836 g~~LaSGS~DGsIrIWDlrs~k--~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk-------------- 1899 (2004)
+++|++|+.||.|++||.+.+. +...+.+|...|.+++|+|+|++|++|+.||+|++||.....
T Consensus 162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 9999999999999999998775 456788999999999999999999999999999999974321
Q ss_pred -eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---------eeEEEccCCCCeEEEEEcCCC-CEEE
Q psy8748 1900 -QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT---------HNGVLSGHENRVTSISLSPNG-MALV 1968 (2004)
Q Consensus 1900 -~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge---------~l~tL~gHs~~VtsLaFSPDg-~~La 1968 (2004)
++..+. ..|...|.+++|+|++..+++++.|+.|++|+...+. ......+|...|++++|+|++ .+|+
T Consensus 242 ~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la 320 (345)
T 3fm0_A 242 KCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA 320 (345)
T ss_dssp EEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEE
T ss_pred ceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEE
Confidence 222222 2366789999999999999999999999999986542 112336899999999999987 5999
Q ss_pred EEECCCeEEEEECCCCeE
Q psy8748 1969 TSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1969 SgS~DGtIrIWdlstg~l 1986 (2004)
+|+.||+|++|++.+++.
T Consensus 321 S~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 321 SCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEETTSCEEEEEECC---
T ss_pred EcCCCCcEEEEEecCCCC
Confidence 999999999999998754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-35 Score=338.97 Aligned_cols=282 Identities=21% Similarity=0.325 Sum_probs=249.8
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCce---EEEee--CCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK---TQVIP--LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~---l~ti~--~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
.+|.+.|++++|+|+++++++++ ||.|++||+.++.. ...+. .|...|.+++|+|+++++++++.||.|++|++
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 36999999999999999999999 99999999987753 33333 78999999999999999999999999999999
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
..+. ......+..|...+.++.|.++ ..+++++.||.|++||+++++.... ...|...|.+++|+|++++++++
T Consensus 127 ~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~ 201 (337)
T 1gxr_A 127 AAPT----PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ-FQGHTDGASCIDISNDGTKLWTG 201 (337)
T ss_dssp CCC------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCC----cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee-eecccCceEEEEECCCCCEEEEE
Confidence 8652 3356677788999999999865 5688999999999999999877644 46789999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
+.||.|++||+++++.+..+ .+...+.+++|+|+++++++++.||.|++||+++++... + ..+...+.+++|+|++
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~--~~~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L--HLHESCVLSLKFAYCG 277 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E--CCCSSCEEEEEECTTS
T ss_pred ecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E--cCCccceeEEEECCCC
Confidence 99999999999999887776 578889999999999999999999999999999877543 3 4566889999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
+++++++.||.|++||+.+++..... .|...|.+++|+|++++|++++.||.|++|++
T Consensus 278 ~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 278 KWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999999999999887554 58899999999999999999999999999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=343.17 Aligned_cols=291 Identities=20% Similarity=0.340 Sum_probs=256.5
Q ss_pred ccccccccccccceeEEEEeCCC-CEEEEEeCCCeEEEEECCC-----CceEEEeeCCCCceEEEEEecCCCEEEEeecC
Q psy8748 1682 LMPKKSLKGHINKVNSVHYSGDS-RHCVSGSLDGKLIIWDTWT-----GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD 1755 (2004)
Q Consensus 1682 ~~pi~sL~GHt~~VtsLaFSPDG-~~LASGS~DGtIrVWDl~T-----gk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D 1755 (2004)
+....+|.||.+.|++++|+|++ ++|++|+.||+|++||+.. +..+..+.+|...|.+++|+|+++++++|+.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 34566899999999999999965 8999999999999999864 34567789999999999999999999999999
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
|.|++||+.++ +....+.+|...|.++.|.++ ..+++|+.||.|++||++.. .+ ....+|...|.+++|+|
T Consensus 87 ~~v~~wd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~-~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 87 KTLRLWDVATG------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CL-ATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp SEEEEEETTTT------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EE-EEECCCSSCEEEEEECC
T ss_pred CEEEEEECCCC------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eE-EEEeccCCcEEEEEEcc
Confidence 99999999754 567788899999999999865 56899999999999999743 33 34568999999999998
Q ss_pred C------CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCC
Q psy8748 1835 D------GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN 1908 (2004)
Q Consensus 1835 d------g~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~ 1908 (2004)
. +..+++++.||.|++||+++.+....+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-- 236 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-- 236 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC--
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC--
Confidence 4 45899999999999999999999999999999999999999999999999999999999999998888743
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc--------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1909 KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS--------GHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1909 ~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~--------gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
...+.+++|+|++.++++++.+ .+++|++..+.....+. .|...+.+++|+|||++|++|+.||.|++|+
T Consensus 237 -~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 237 -QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp -CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred -CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 3579999999999999998765 59999998877776664 3567899999999999999999999999999
Q ss_pred CCCC
Q psy8748 1981 ESNT 1984 (2004)
Q Consensus 1981 lstg 1984 (2004)
+.++
T Consensus 315 ~~t~ 318 (319)
T 3frx_A 315 VMTA 318 (319)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 8764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=364.10 Aligned_cols=293 Identities=15% Similarity=0.190 Sum_probs=250.7
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC----CceEEEeeCCCCceEEEEEecC-CCEEEEeecCCeEEEEEcC
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT----GNKTQVIPLRSAWVMSVAFAQS-GNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T----gk~l~ti~~Ht~~ItsLafSPd-g~~LaSGS~DGtIrVWDl~ 1764 (2004)
+|...|++++|+|++++|++|+.||.|++||+.+ .+....+..|...|.+++|+|+ ++++++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 4788999999999999999999999999999987 4578888999999999999998 8999999999999999998
Q ss_pred CCCCCC---cceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEeeccc-----cCCeEEEEECC
Q psy8748 1765 NRDSTG---AAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQAH-----IGDVVSISLSP 1834 (2004)
Q Consensus 1765 t~~~~~---~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~~h-----~~~ItsLafSP 1834 (2004)
...... .........+|...+.++.|+++ ..+++++.||.|++||+++++....+.... ...|.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 764111 01112234578889999999965 568899999999999999988775553222 78899999999
Q ss_pred CC-CEEEEEECCC---eEEEEECCCC-eEEEEEe-cCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccCCceeEEEcCC
Q psy8748 1835 DG-QYFVTGSVDK---SCKLWDFREK-KCVQTFF-GHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRADQQIATYLPP 1907 (2004)
Q Consensus 1835 dg-~~LaSGS~DG---sIrIWDlrs~-k~I~tl~-~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~ 1907 (2004)
++ .++++++.|| .|++||++++ ..+..+. +|...|.+++|+| +++++++++.||.|++||+++++.+..+.
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-- 302 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-- 302 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE--
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec--
Confidence 97 6899999998 9999999986 5667777 8999999999999 99999999999999999999999888874
Q ss_pred CCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEc-----------------------------------cC
Q psy8748 1908 NKNSGFTSCAVSSSG-RYIFCGSDDNNVHVWDLLKTTHNGVLS-----------------------------------GH 1951 (2004)
Q Consensus 1908 ~~~s~ItsLafSPdG-~~LaSGSsDGsIrIWDL~tge~l~tL~-----------------------------------gH 1951 (2004)
.|...+.+++|+|++ .++++++.||.|++||+.++....... .|
T Consensus 303 ~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (416)
T 2pm9_A 303 ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWY 382 (416)
T ss_dssp CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTT
T ss_pred CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccc
Confidence 556789999999999 899999999999999998765432211 16
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1952 ENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1952 s~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
..++.+++|+|+|++|++++.||.|++|++.++
T Consensus 383 ~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 383 GEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 778889999999999999999999999999875
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=341.92 Aligned_cols=282 Identities=20% Similarity=0.334 Sum_probs=248.6
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|.+.|++++|+|+|++||+ |+.||+|++||..+ +..
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s-~s~Dg~v~iWd~~~-------------~~~---------------------------- 89 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLS-ASQDGKLIIWDSYT-------------TNK---------------------------- 89 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEE-EETTTEEEEEETTT-------------CCE----------------------------
T ss_pred cCCCCceEEEEECCCCCEEEE-EeCCCcEEEEECCC-------------CCc----------------------------
Confidence 458889999999999999999 99999999999877 211
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
...+.+|...|.+++|+|+++++++|+
T Consensus 90 -----------------------------------------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~ 116 (340)
T 1got_B 90 -----------------------------------------------------VHAIPLRSSWVMTCAYAPSGNYVACGG 116 (340)
T ss_dssp -----------------------------------------------------EEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred -----------------------------------------------------ceEeecCCccEEEEEECCCCCEEEEEe
Confidence 123345788999999999999999999
Q ss_pred CCCeEEEEECCCC----ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceee
Q psy8748 1712 LDGKLIIWDTWTG----NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tg----k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vss 1787 (2004)
.||.|++||+.++ .....+.+|.+.|.++.|++++. +++++.||.|++||+.++ .....+.+|.+.+.+
T Consensus 117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~------~~~~~~~~h~~~v~~ 189 (340)
T 1got_B 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG------QQTTTFTGHTGDVMS 189 (340)
T ss_dssp TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT------EEEEEECCCSSCEEE
T ss_pred CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC------cEEEEEcCCCCceEE
Confidence 9999999999876 34567789999999999998775 889999999999999754 566778899999999
Q ss_pred eEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEec--
Q psy8748 1788 CRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG-- 1864 (2004)
Q Consensus 1788 vafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~-- 1864 (2004)
+.|++++ .+++|+.||.|++||++++.... .+.+|...|.+++|+|++++|++|+.||.|++||++.++.+..+..
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~-~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~ 268 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQ-TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEE-EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCeeEE-EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC
Confidence 9999654 58899999999999999988774 4578999999999999999999999999999999999988777643
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1865 HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1865 h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
+...|.+++|+|+|+++++|+.||.|++||+.+++....+ .+|...|.+++|+|+|.+|++|+.||.|++||
T Consensus 269 ~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~--~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe--ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 2347999999999999999999999999999999888777 45678999999999999999999999999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=340.56 Aligned_cols=292 Identities=24% Similarity=0.397 Sum_probs=253.1
Q ss_pred CCCCCCCeEEEEEccCC-CEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1551 PEPCKEQRNAVSFHACS-TLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdG-k~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
.++|++.|++++|+|++ ++||| |+.||+|++|++.. .. ..
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s-~s~D~~v~~W~~~~--------------------~~----------~~-------- 53 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLS-ASRDKTLISWKLTG--------------------DD----------QK-------- 53 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEE-EETTSEEEEEEEEE--------------------ET----------TE--------
T ss_pred EccccceEEEEEccCCCccEEEE-ecCCccEEEecCCC--------------------CC----------cc--------
Confidence 35699999999999975 89999 99999999999865 00 00
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVS 1709 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LAS 1709 (2004)
...+...+.+|...|++++|+|++++|++
T Consensus 54 ---------------------------------------------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 54 ---------------------------------------------------FGVPVRSFKGHSHIVQDCTLTADGAYALS 82 (319)
T ss_dssp ---------------------------------------------------EEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ---------------------------------------------------ccccceEEeCCcccEEEEEECCCCCEEEE
Confidence 00134567899999999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeE
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR 1789 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssva 1789 (2004)
|+.||+|++||+.+++....+.+|...|.+++|+|++.++++|+.||.|++||++. .....+.+|...+.++.
T Consensus 83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-------~~~~~~~~h~~~v~~~~ 155 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-------QCLATLLGHNDWVSQVR 155 (319)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-------CEEEEECCCSSCEEEEE
T ss_pred EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CeEEEEeccCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999853 45667888999999999
Q ss_pred EeCC-------CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q psy8748 1790 FIDD-------TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF 1862 (2004)
Q Consensus 1790 fsdd-------~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl 1862 (2004)
+.+. ..+++++.|+.|++||+++++... .+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA-DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234 (319)
T ss_dssp ECCC------CCEEEEEETTSCEEEEETTTTEEEE-EECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe-eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 9753 269999999999999999887664 45689999999999999999999999999999999999998888
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC------CCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy8748 1863 FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP------NKNSGFTSCAVSSSGRYIFCGSDDNNVHV 1936 (2004)
Q Consensus 1863 ~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~------~~~s~ItsLafSPdG~~LaSGSsDGsIrI 1936 (2004)
.. ...|.+++|+|++.++++++. +.+++|++..+.....+... .+...+.+++|+|+|++|++|+.||.|++
T Consensus 235 ~~-~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~v 312 (319)
T 3frx_A 235 SA-QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312 (319)
T ss_dssp EC-CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cC-CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEE
Confidence 65 468999999999999998875 55999999887776665332 23456899999999999999999999999
Q ss_pred EECCCC
Q psy8748 1937 WDLLKT 1942 (2004)
Q Consensus 1937 WDL~tg 1942 (2004)
||+.++
T Consensus 313 Wd~~t~ 318 (319)
T 3frx_A 313 WQVMTA 318 (319)
T ss_dssp EEEEEC
T ss_pred EEEeec
Confidence 998654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=339.11 Aligned_cols=297 Identities=21% Similarity=0.280 Sum_probs=239.7
Q ss_pred cccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC--ceEEEe-eC-CCCceEEEEEecCCCEEEEeecCCeE
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG--NKTQVI-PL-RSAWVMSVAFAQSGNFVACGGMDNMC 1758 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg--k~l~ti-~~-Ht~~ItsLafSPdg~~LaSGS~DGtI 1758 (2004)
.....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++ .....+ .. |...|.+++|+|++++|++|+.||.|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 356788999999999999987 9999999999999999875 344555 34 99999999999999999999999999
Q ss_pred EEEEcCCCCC-CCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCC-c--eeEEeeccccCCeEEEEEC
Q psy8748 1759 TVYDLNNRDS-TGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETG-Q--RIHEVAQAHIGDVVSISLS 1833 (2004)
Q Consensus 1759 rVWDl~t~~~-~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg-~--~i~~il~~h~~~ItsLafS 1833 (2004)
++|++..... .........+.+|...|.++.|+++ .++++|+.|+.|++||+... . .....+.+|...|.+++|+
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 9999864321 1234566778899999999999965 56899999999999999533 2 2234567899999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCC--eEEEEEecCCCCeEEEEEeCC--CCEEEEEECCCeEEEEEccCCc--------ee
Q psy8748 1834 PDGQYFVTGSVDKSCKLWDFREK--KCVQTFFGHEADVNSVCFHPS--GLAFATGSEDKTARLFDIRADQ--------QI 1901 (2004)
Q Consensus 1834 Pdg~~LaSGS~DGsIrIWDlrs~--k~I~tl~~h~s~ItsIafSPd--g~~LaSgS~DGtIrIWDLrtgk--------~i 1901 (2004)
|++++|++|+.||.|++||...+ +++..+.+|...|.+++|+|+ +.++++|+.||+|++||++++. ..
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 99999999999999999998776 678889999999999999998 6789999999999999987542 22
Q ss_pred EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEE-EccCCC-CeEEEEEcC--CCCEEEEEECCCe
Q psy8748 1902 ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT--HNGV-LSGHEN-RVTSISLSP--NGMALVTSSWDQF 1975 (2004)
Q Consensus 1902 ~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge--~l~t-L~gHs~-~VtsLaFSP--Dg~~LaSgS~DGt 1975 (2004)
..+ ...|...|.+++|++++ +|++|+.||.|++||..+++ .... ..+|.. .|.+++|+| ++++|++|+.||+
T Consensus 243 ~~~-~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 243 AIL-PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp EEC-CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred eec-ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 222 23367889999999765 89999999999999998774 3333 367887 899999999 7899999999999
Q ss_pred EEEEECCC
Q psy8748 1976 VKVWQESN 1983 (2004)
Q Consensus 1976 IrIWdlst 1983 (2004)
|++|++++
T Consensus 321 v~~W~~~~ 328 (330)
T 2hes_X 321 VNFWSLEK 328 (330)
T ss_dssp EEEEEC--
T ss_pred EEEEEecc
Confidence 99999875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=341.18 Aligned_cols=292 Identities=22% Similarity=0.373 Sum_probs=248.4
Q ss_pred cccccccccccccceeEEEE-----eC-CCCEEEEEeCCCeEEEEECCCC-------ceEEEeeCCCCceEEEEEecCCC
Q psy8748 1681 KLMPKKSLKGHINKVNSVHY-----SG-DSRHCVSGSLDGKLIIWDTWTG-------NKTQVIPLRSAWVMSVAFAQSGN 1747 (2004)
Q Consensus 1681 k~~pi~sL~GHt~~VtsLaF-----SP-DG~~LASGS~DGtIrVWDl~Tg-------k~l~ti~~Ht~~ItsLafSPdg~ 1747 (2004)
.......|.||.+.|++++| ++ ++++|++|+.||+|++||+.++ .....+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 44567789999999999999 76 9999999999999999998753 45667889999999999999999
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEe--ecccc
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEV--AQAHI 1824 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~i--l~~h~ 1824 (2004)
++++|+.||.|++||+.++ .....+.+|...|.++.|+++ ..+++++.||.|++||+...... .. ...|.
T Consensus 90 ~l~s~s~D~~v~lwd~~~~------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~ 162 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTG------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF-SSAEKENHS 162 (343)
T ss_dssp EEEEEETTSEEEEEETTSS------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-ECCTTTSCS
T ss_pred EEEEEcCCCcEEEEECCCC------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-eeecccCCC
Confidence 9999999999999999764 456778899999999999965 46899999999999999843322 22 23688
Q ss_pred CCeEEEEECCCC----------CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q psy8748 1825 GDVVSISLSPDG----------QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1825 ~~ItsLafSPdg----------~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWD 1894 (2004)
..|.+++|+|++ .++++++.||.|++|| ...+....+.+|...|.+++|+|+|++|++|+.||.|++||
T Consensus 163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 899999999987 7999999999999999 45677788889999999999999999999999999999999
Q ss_pred ccCC-ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE--EEc-----------cCCCCeEEEEE
Q psy8748 1895 IRAD-QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNG--VLS-----------GHENRVTSISL 1960 (2004)
Q Consensus 1895 Lrtg-k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~--tL~-----------gHs~~VtsLaF 1960 (2004)
+... .....+. +...|.+++|+|++.++++| .|+.|++||+.+++... .+. +|...|.+++|
T Consensus 242 ~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (343)
T 2xzm_R 242 ILNLTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317 (343)
T ss_dssp SSCCSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred CCCCcccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence 9543 3333332 23469999999999988766 57789999998776543 333 68889999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1961 SPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1961 SPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
+|+|++|++|+.||.|++|+++++
T Consensus 318 sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 318 NALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCCeEEEecCCceEEEEEEEcc
Confidence 999999999999999999998765
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=347.02 Aligned_cols=284 Identities=28% Similarity=0.490 Sum_probs=249.5
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCC------------------CceEEEEEecCCCEEEE
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS------------------AWVMSVAFAQSGNFVAC 1751 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht------------------~~ItsLafSPdg~~LaS 1751 (2004)
+|.+.|++++|+|||++||+|+ ++.+++|++.+++.+..+..|. ..|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 6899999999999888776553 24999999999999999
Q ss_pred eecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEE
Q psy8748 1752 GGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSI 1830 (2004)
Q Consensus 1752 GS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsL 1830 (2004)
|+.||.|++||+.++ +....+.+|...|.++.|+++ ..+++++.||.|++||+++++..... .+...+.++
T Consensus 141 ~~~d~~i~iwd~~~~------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~ 212 (393)
T 1erj_A 141 GAEDRLIRIWDIENR------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL--SIEDGVTTV 212 (393)
T ss_dssp EETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEE
T ss_pred EcCCCeEEEEECCCC------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE--EcCCCcEEE
Confidence 999999999999754 566778899999999999854 56999999999999999998876554 466789999
Q ss_pred EECC-CCCEEEEEECCCeEEEEECCCCeEEEEE-------ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc---
Q psy8748 1831 SLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTF-------FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ--- 1899 (2004)
Q Consensus 1831 afSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl-------~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk--- 1899 (2004)
+|+| +++++++|+.||.|++||++++..+..+ .+|...|.+++|+|+|+++++|+.||.|++||+++..
T Consensus 213 ~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 9999 8999999999999999999999887766 5788999999999999999999999999999997643
Q ss_pred ---------eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcC------CC
Q psy8748 1900 ---------QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP------NG 1964 (2004)
Q Consensus 1900 ---------~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSP------Dg 1964 (2004)
+...+ .+|...|.+++|++++.+|++|+.||.|++||+.+++++..+.+|.+.|.+++|++ ++
T Consensus 293 ~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~ 370 (393)
T 1erj_A 293 DSKTPNSGTCEVTY--IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 370 (393)
T ss_dssp --------CEEEEE--ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred cccCCCCCcceEEE--ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCC
Confidence 22233 35667899999999999999999999999999999999999999999999999986 68
Q ss_pred CEEEEEECCCeEEEEECCCC
Q psy8748 1965 MALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1965 ~~LaSgS~DGtIrIWdlstg 1984 (2004)
.+|++|+.||+|++|++...
T Consensus 371 ~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 371 NVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEEEETTSEEEEEEEEEC
T ss_pred CEEEEECCCCcEEECccccc
Confidence 89999999999999998653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=350.19 Aligned_cols=246 Identities=16% Similarity=0.177 Sum_probs=207.3
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE----EeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQ----VIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~----ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
..+|...|++++|+|+++ +++++.||+|+|||+.+++... ...+|...|.+++|+|++++|++|+.||.|++||+
T Consensus 90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~ 168 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168 (357)
T ss_dssp EEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 456889999999999986 5567889999999998886543 34579999999999999999999999999999999
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEe-eccccCCeEEEEECCC-CCEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEV-AQAHIGDVVSISLSPD-GQYF 1839 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~i-l~~h~~~ItsLafSPd-g~~L 1839 (2004)
.++ .....+.+|...+.+++|+++ ..+++++.||.|++||+++++..... ...+...+.+++|+|+ +.+|
T Consensus 169 ~~~------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l 242 (357)
T 4g56_B 169 SQK------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTF 242 (357)
T ss_dssp TTT------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEE
T ss_pred CCC------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceE
Confidence 754 567788899999999999854 36889999999999999998876443 3456778999999997 5689
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEE
Q psy8748 1840 VTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAV 1918 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg-~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLaf 1918 (2004)
++|+.|+.|++||+++++.+..+.+|...|++++|+|++ ++|++|+.||+|++||+++++....+ .|...|++++|
T Consensus 243 a~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vaf 319 (357)
T 4g56_B 243 ACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAW 319 (357)
T ss_dssp EEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEE
T ss_pred EEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEE
Confidence 999999999999999999999999999999999999987 57899999999999999998877654 57789999999
Q ss_pred cC-CCCEEEEEeCCCeEEEEECCCCe
Q psy8748 1919 SS-SGRYIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1919 SP-dG~~LaSGSsDGsIrIWDL~tge 1943 (2004)
+| ++++|++|+.||+|++||+.+..
T Consensus 320 sP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 320 SPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CSSSTTEEEEEETTSCEEEEECC---
T ss_pred eCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 98 89999999999999999996543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=398.95 Aligned_cols=390 Identities=18% Similarity=0.259 Sum_probs=316.5
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1550 APEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1550 a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
...+|.+.|++++|||+|++||+ |+.||+|++||+.+ +.....+.+|...+.+ +.++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s-~~~d~~i~vw~~~~-------------~~~~~~~~~h~~~v~~--------~~~s~ 667 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIAS-CGADKTLQVFKAET-------------GEKLLDIKAHEDEVLC--------CAFSS 667 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTT-------------CCEEEEECCCSSCEEE--------EEECT
T ss_pred EEecccccEEEEEECCCCCEEEE-EeCCCeEEEEECCC-------------CCEEEEeccCCCCEEE--------EEEec
Confidence 34568999999999999999999 99999999999988 6777777776665544 33355
Q ss_pred CCcchh------hhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC-
Q psy8748 1630 TSSINI------YLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG- 1702 (2004)
Q Consensus 1630 dgSidi------~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP- 1702 (2004)
++..-. .+..| +. ........+.+|.+.|++++|+|
T Consensus 668 ~~~~l~s~~~d~~v~vw----------------------------d~---------~~~~~~~~~~~~~~~v~~~~~~~~ 710 (1249)
T 3sfz_A 668 DDSYIATCSADKKVKIW----------------------------DS---------ATGKLVHTYDEHSEQVNCCHFTNK 710 (1249)
T ss_dssp TSSEEEEEETTSEEEEE----------------------------ET---------TTCCEEEEEECCSSCEEEEEECSS
T ss_pred CCCEEEEEeCCCeEEEE----------------------------EC---------CCCceEEEEcCCCCcEEEEEEecC
Confidence 442111 11111 00 01245677889999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceE-------
Q psy8748 1703 -DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKV------- 1774 (2004)
Q Consensus 1703 -DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~------- 1774 (2004)
++.++++|+.||.|++||+.+++....+.+|.+.|.+++|+|+++++++|+.||.|++||+.++........
T Consensus 711 ~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 790 (1249)
T 3sfz_A 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 790 (1249)
T ss_dssp SSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred CCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccccc
Confidence 556899999999999999999999999999999999999999999999999999999999976431111000
Q ss_pred EEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECC
Q psy8748 1775 IRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR 1854 (2004)
Q Consensus 1775 i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlr 1854 (2004)
..........+.++.|++++..++++.++.+.+||..++........+|...|.+++|+|+++++++++.||.|++||+.
T Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870 (1249)
T ss_dssp -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence 00111223467888999887766666789999999999999888878999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCcee-----------------------------EEEc
Q psy8748 1855 EKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQI-----------------------------ATYL 1905 (2004)
Q Consensus 1855 s~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i-----------------------------~t~~ 1905 (2004)
++..+..+.+|...|.+++|+|+|+++++++.||.|++||+.+.... ....
T Consensus 871 ~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1249)
T 3sfz_A 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950 (1249)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence 99999999999999999999999999999999999999997532100 0000
Q ss_pred C------CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1906 P------PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1906 ~------~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
. ......+.+++|+|+|+++++|+.+|.|++||+.+++....+.+|.+.|++++|+|+|++|++++.||.|++|
T Consensus 951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030 (1249)
T ss_dssp ESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEE
T ss_pred cCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 0 0123568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEEeecCCCCcccc
Q psy8748 1980 QESNTIVWKVLKVYNLEKKTIFC 2002 (2004)
Q Consensus 1980 dlstg~l~k~Ik~~~~h~~~Vts 2002 (2004)
++.++... ....|...|.+
T Consensus 1031 d~~~~~~~----~~~~~~~~v~~ 1049 (1249)
T 3sfz_A 1031 NWQTGDYV----FLQAHQETVKD 1049 (1249)
T ss_dssp ETTTTEEE----CCBCCSSCEEE
T ss_pred ECCCCceE----EEecCCCcEEE
Confidence 99998543 23356665554
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=330.72 Aligned_cols=294 Identities=18% Similarity=0.300 Sum_probs=263.0
Q ss_pred ccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1682 LMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1682 ~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
......+.+|.+.|++++|+|++++|++|+.||.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecC-----CeEEEEECCCCceeE----------EeeccccC
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGD-----MKIVTWNLETGQRIH----------EVAQAHIG 1825 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~D-----GtI~IWDl~tg~~i~----------~il~~h~~ 1825 (2004)
|+.++ +....+. +...+.++.|.+++ .+++++.+ |.|++||+..+.... .....|.+
T Consensus 102 d~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 102 DVSNG------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp ETTTC------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred ECCCC------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 99764 2333443 77889999999654 57778887 999999997664321 12234444
Q ss_pred --CeEEEEECCCCCEEEEEECCCeEEEEECCC-CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeE
Q psy8748 1826 --DVVSISLSPDGQYFVTGSVDKSCKLWDFRE-KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIA 1902 (2004)
Q Consensus 1826 --~ItsLafSPdg~~LaSGS~DGsIrIWDlrs-~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~ 1902 (2004)
.+.+++|+|+++++++++.||.|++||+++ +..+..+..|...|.+++|+|++++|++++.||.|++||+++++...
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 899999999999999999999999999998 78888999999999999999999999999999999999999999888
Q ss_pred EEcCCCCCCCeEEEEEcCCCCEEEEEeCCC--------------eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEE
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSGRYIFCGSDDN--------------NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALV 1968 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG~~LaSGSsDG--------------sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~La 1968 (2004)
.+. +...+.+++|+|+++++++++.++ .+++||..+++.+..+.+|...|++++|+|++++|+
T Consensus 255 ~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 331 (369)
T 3zwl_B 255 KYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA 331 (369)
T ss_dssp EEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred eec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEE
Confidence 875 456799999999999999999988 899999999999999999999999999999999999
Q ss_pred EEECCCeEEEEECCCCe
Q psy8748 1969 TSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1969 SgS~DGtIrIWdlstg~ 1985 (2004)
+++.||.|++|+++++.
T Consensus 332 s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 332 SGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEETTSEEEEEEECHHH
T ss_pred EEcCCCeEEEEECcccc
Confidence 99999999999998753
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=387.22 Aligned_cols=350 Identities=11% Similarity=0.138 Sum_probs=270.3
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|...|++++|+|+|++||+ |+.||+|+||+... ....
T Consensus 14 ~gh~~~V~~lafspdg~~lAs-gs~Dg~I~lw~~~~-------------~~~~--------------------------- 52 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAI-ATVTGEVHIYGQQQ-------------VEVV--------------------------- 52 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEE-EETTSEEEEECSTT-------------CEEE---------------------------
T ss_pred cCCCCCcEEEEECCCCCEEEE-EeCCCEEEEEeCCC-------------cEEE---------------------------
Confidence 358889999999999999999 99999999999765 1100
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
. ...|...|++++|+| |++|++++
T Consensus 53 ------------------------------------------------------~-~~~~~~~V~~l~fsp-g~~L~S~s 76 (902)
T 2oaj_A 53 ------------------------------------------------------I-KLEDRSAIKEMRFVK-GIYLVVIN 76 (902)
T ss_dssp ------------------------------------------------------E-ECSSCCCEEEEEEET-TTEEEEEE
T ss_pred ------------------------------------------------------E-EcCCCCCEEEEEEcC-CCEEEEEE
Confidence 0 012667899999999 88999999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEE-------EEEecCccc
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI-------RELLGYEGF 1784 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i-------~sl~gh~~~ 1784 (2004)
.|++|++||+.+++.+..+. |.+.|++++|+|+++++++|+.||.|++||++++... .. .. ....+|.+.
T Consensus 77 ~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~-~i~~~~~~~~~~~~h~~~ 153 (902)
T 2oaj_A 77 AKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SF-KLDNLQKSSFFPAARLSP 153 (902)
T ss_dssp TTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EE-EECCHHHHHTCSSSCCCC
T ss_pred CcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cc-eeccccccccccccCCCC
Confidence 99999999999999988886 6688999999999999999999999999999865310 00 00 223568889
Q ss_pred eeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEeec-----------------cccCCeEEEEECCCCCEEEEEECC
Q psy8748 1785 LSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQ-----------------AHIGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1785 Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~-----------------~h~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
|.+++|+++ ..+++|+.||.| +||+++++....+.. .|...|.+++|+|+|++|++|+.|
T Consensus 154 V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D 232 (902)
T 2oaj_A 154 IVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED 232 (902)
T ss_dssp CCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC
Confidence 999999975 579999999999 999999887654421 235779999999999999999999
Q ss_pred CeEEEEECCCCeEEEE--Ee---c-------------CCCCeEEEEE---------------------------------
Q psy8748 1846 KSCKLWDFREKKCVQT--FF---G-------------HEADVNSVCF--------------------------------- 1874 (2004)
Q Consensus 1846 GsIrIWDlrs~k~I~t--l~---~-------------h~s~ItsIaf--------------------------------- 1874 (2004)
|.|++||+++++.+.. +. . |...|.+++|
T Consensus 233 g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~ 312 (902)
T 2oaj_A 233 NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGY 312 (902)
T ss_dssp CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEE
T ss_pred CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCC
Confidence 9999999977654432 10 0 1112333333
Q ss_pred --------------------------------------------------------------------------------
Q psy8748 1875 -------------------------------------------------------------------------------- 1874 (2004)
Q Consensus 1875 -------------------------------------------------------------------------------- 1874 (2004)
T Consensus 313 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~ 392 (902)
T 2oaj_A 313 TPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASL 392 (902)
T ss_dssp CCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGG
T ss_pred CCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccccc
Confidence
Q ss_pred ---------------------------------------------------eCCCCEEEEEECCCeEEEEEccCCcee--
Q psy8748 1875 ---------------------------------------------------HPSGLAFATGSEDKTARLFDIRADQQI-- 1901 (2004)
Q Consensus 1875 ---------------------------------------------------SPdg~~LaSgS~DGtIrIWDLrtgk~i-- 1901 (2004)
+|+++++++|+.||+|++||+.++...
T Consensus 393 ~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~ 472 (902)
T 2oaj_A 393 FPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN 472 (902)
T ss_dssp SCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT
T ss_pred CCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC
Confidence 234455666666666666666554311
Q ss_pred --EEEc-----CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------------------
Q psy8748 1902 --ATYL-----PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT-------------------------------- 1942 (2004)
Q Consensus 1902 --~t~~-----~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg-------------------------------- 1942 (2004)
.... ...|...|.+++|+|+|++||+|+.||+|++||+.++
T Consensus 473 ~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (902)
T 2oaj_A 473 ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVD 552 (902)
T ss_dssp BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEE
T ss_pred ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccc
Confidence 0000 0145568999999999999999999999999999765
Q ss_pred -------------eeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--EEeec-CCCCccccc
Q psy8748 1943 -------------THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKV--LKVYN-LEKKTIFCV 2003 (2004)
Q Consensus 1943 -------------e~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~--Ik~~~-~h~~~VtsV 2003 (2004)
+++..+.+|.+.|++++|+||| +||+|+.||+|++||++++..... ++.+. .|.+.|++|
T Consensus 553 ~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv 628 (902)
T 2oaj_A 553 VRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCI 628 (902)
T ss_dssp CGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEE
T ss_pred ccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEE
Confidence 2467788999999999999999 999999999999999998865432 12343 777888876
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-34 Score=339.74 Aligned_cols=301 Identities=20% Similarity=0.270 Sum_probs=246.3
Q ss_pred CCCC-CeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1553 PCKE-QRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1553 ~Hk~-~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.|.+ .|++++|+|+|++||+ |+.||+|+|||+.+ +....
T Consensus 13 ~h~~~~v~~l~~sp~g~~las-~~~D~~i~iw~~~~-------------~~~~~-------------------------- 52 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLAS-CGGDRRIRIWGTEG-------------DSWIC-------------------------- 52 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEE-EETTSCEEEEEEET-------------TEEEE--------------------------
T ss_pred CCCCCcEEEEEECCCCCEEEE-EcCCCeEEEEEcCC-------------Cccee--------------------------
Confidence 4666 8999999999999999 99999999999876 11000
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
......+|.+.|++++|+|+|++|++|+
T Consensus 53 ----------------------------------------------------~~~~~~~h~~~v~~~~~sp~g~~l~s~s 80 (345)
T 3fm0_A 53 ----------------------------------------------------KSVLSEGHQRTVRKVAWSPCGNYLASAS 80 (345)
T ss_dssp ----------------------------------------------------EEEECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred ----------------------------------------------------eeeeccccCCcEEEEEECCCCCEEEEEE
Confidence 0011247999999999999999999999
Q ss_pred CCCeEEEEECCCC--ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeE
Q psy8748 1712 LDGKLIIWDTWTG--NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR 1789 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tg--k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssva 1789 (2004)
.||+|++||..++ +....+.+|...|.+++|+|++++|++|+.||.|++||+.... .......+.+|...+.++.
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~~~h~~~v~~~~ 157 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED---EYECVSVLNSHTQDVKHVV 157 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS---CEEEEEEECCCCSCEEEEE
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC---CeEEEEEecCcCCCeEEEE
Confidence 9999999998876 4567889999999999999999999999999999999997643 3455677888999999999
Q ss_pred EeCC-CcEEEeecCCeEEEEECCCCcee-EEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCC------------
Q psy8748 1790 FIDD-TTLLTGSGDMKIVTWNLETGQRI-HEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE------------ 1855 (2004)
Q Consensus 1790 fsdd-~~LlSgS~DGtI~IWDl~tg~~i-~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs------------ 1855 (2004)
|+++ ..+++++.||.|++||..++... ...+.+|...|.+++|+|+|++|++|+.||.|++||...
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~ 237 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence 9865 56899999999999999887643 244678999999999999999999999999999999632
Q ss_pred ---CeEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce-------eEEEcCCCCCCCeEEEEEcCCC-C
Q psy8748 1856 ---KKCVQTFFG-HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ-------IATYLPPNKNSGFTSCAVSSSG-R 1923 (2004)
Q Consensus 1856 ---~k~I~tl~~-h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~-------i~t~~~~~~~s~ItsLafSPdG-~ 1923 (2004)
.+++..+.+ |...|.+++|+|++..+++++.|+.|++|+...+.. ........|...|.+++|+|++ .
T Consensus 238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 317 (345)
T 3fm0_A 238 DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG 317 (345)
T ss_dssp -CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTT
T ss_pred CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCce
Confidence 133445544 888999999999999999999999999999875431 1111234677899999999987 5
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEE
Q psy8748 1924 YIFCGSDDNNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1924 ~LaSGSsDGsIrIWDL~tge~l~tL 1948 (2004)
+|++|+.||+|++|++.+.+.....
T Consensus 318 ~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 318 LLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEEEETTSCEEEEEECC-------
T ss_pred EEEEcCCCCcEEEEEecCCCCcccc
Confidence 9999999999999999887765443
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=357.24 Aligned_cols=326 Identities=14% Similarity=0.189 Sum_probs=269.6
Q ss_pred CCCCCCeEEEEEccCCC-EEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1552 EPCKEQRNAVSFHACST-LLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk-~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..|...|++++|+|+|+ ++++ |+.||+|++||..+ ++..
T Consensus 157 ~~~~~~v~~~~~~~~~~~~l~~-~~~d~~v~vwd~~~-------------~~~~-------------------------- 196 (615)
T 1pgu_A 157 SGHSQRINACHLKQSRPMRSMT-VGDDGSVVFYQGPP-------------FKFS-------------------------- 196 (615)
T ss_dssp CSCSSCEEEEEECSSSSCEEEE-EETTTEEEEEETTT-------------BEEE--------------------------
T ss_pred ecCCccEEEEEECCCCCcEEEE-EeCCCcEEEEeCCC-------------ccee--------------------------
Confidence 45888999999999998 7888 99999999999876 2211
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCccccccccccccccc---ceeEEEEeCC-CCE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHIN---KVNSVHYSGD-SRH 1706 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~---~VtsLaFSPD-G~~ 1706 (2004)
..+.+|.+ .|++++|+|+ +++
T Consensus 197 -------------------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~ 221 (615)
T 1pgu_A 197 -------------------------------------------------------ASDRTHHKQGSFVRDVEFSPDSGEF 221 (615)
T ss_dssp -------------------------------------------------------EEECSSSCTTCCEEEEEECSTTCCE
T ss_pred -------------------------------------------------------eeecccCCCCceEEEEEECCCCCCE
Confidence 22345666 8999999999 999
Q ss_pred EEEEeCCCeEEEEECCCCceEEEe-e---CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC-
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVI-P---LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY- 1781 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti-~---~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh- 1781 (2004)
+++++.||.|++||+.+++.+..+ . .|...|.+++|+ +++++++++.||.|++||+.++ +....+..+
T Consensus 222 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~------~~~~~~~~~~ 294 (615)
T 1pgu_A 222 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS------KCVQKWTLDK 294 (615)
T ss_dssp EEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT------EEEEEEECCT
T ss_pred EEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC------cEEEEEcCCC
Confidence 999999999999999999999998 6 899999999999 9999999999999999999754 344445444
Q ss_pred ---ccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC-----------------------
Q psy8748 1782 ---EGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD----------------------- 1835 (2004)
Q Consensus 1782 ---~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd----------------------- 1835 (2004)
...+.++.+.++..+++++.||.|++||+.+++....+ .+|...|.+++| |+
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~-~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~ 372 (615)
T 1pgu_A 295 QQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTI-SGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHS 372 (615)
T ss_dssp TCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEE-CCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCC
T ss_pred CcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEE-eCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCccc
Confidence 46677788888888999999999999998876554322 233333333322 11
Q ss_pred --------------------------------------------------------------------------------
Q psy8748 1836 -------------------------------------------------------------------------------- 1835 (2004)
Q Consensus 1836 -------------------------------------------------------------------------------- 1835 (2004)
T Consensus 373 ~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (615)
T 1pgu_A 373 NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 452 (615)
T ss_dssp SCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred CceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE
Confidence
Q ss_pred ---CCEEEEEEC-CCeEEEEECCCCeEE-EEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCC
Q psy8748 1836 ---GQYFVTGSV-DKSCKLWDFREKKCV-QTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN 1910 (2004)
Q Consensus 1836 ---g~~LaSGS~-DGsIrIWDlrs~k~I-~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~ 1910 (2004)
++++++++. ||.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+.. .|.
T Consensus 453 ~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~h~ 531 (615)
T 1pgu_A 453 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA-FRT 531 (615)
T ss_dssp EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC-CCS
T ss_pred EEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec-CCC
Confidence 445566666 677777777665544 55667889999999999999999999999999999999988776532 267
Q ss_pred CCeEEEEEcC----------CCCEEEEEeCCCeEEEEECCCC-eeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1911 SGFTSCAVSS----------SGRYIFCGSDDNNVHVWDLLKT-THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1911 s~ItsLafSP----------dG~~LaSGSsDGsIrIWDL~tg-e~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
..|++++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|++++|+|+++ |++++.||.|++|
T Consensus 532 ~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw 610 (615)
T 1pgu_A 532 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW 610 (615)
T ss_dssp SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEE
Confidence 8899999999 9999999999999999999998 78888999999999999999999 9999999999999
Q ss_pred ECCC
Q psy8748 1980 QESN 1983 (2004)
Q Consensus 1980 dlst 1983 (2004)
+++.
T Consensus 611 ~~~~ 614 (615)
T 1pgu_A 611 NVVL 614 (615)
T ss_dssp EEC-
T ss_pred eeec
Confidence 9875
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=345.60 Aligned_cols=245 Identities=18% Similarity=0.195 Sum_probs=210.2
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE----eeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQV----IPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~t----i~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
..|..+|++++|+|++ .+++|+.||+|+|||+.+++.... ..+|.+.|++++|+|+|++|++|+.||.|++||+.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 3467889999999985 688999999999999999876544 35899999999999999999999999999999997
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEee-ccccCCeEEEEECC-CCCEEE
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEVA-QAHIGDVVSISLSP-DGQYFV 1840 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~il-~~h~~~ItsLafSP-dg~~La 1840 (2004)
++ +....+.+|...|.++.|++++ .+++++.||.|++||+++++....+. ..+...+.+++|+| ++++++
T Consensus 158 ~~------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 158 QQ------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp TT------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred CC------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence 54 6678889999999999998654 57899999999999999998876553 34566799999999 456889
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEc
Q psy8748 1841 TGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVS 1919 (2004)
Q Consensus 1841 SGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg-~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafS 1919 (2004)
+|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++|+.||+|++||+++++... + .+|...|++++|+
T Consensus 232 sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~--~~H~~~V~~v~~s 308 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S--QAHRDFVRDATWS 308 (344)
T ss_dssp EEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E--CCCSSCEEEEEEC
T ss_pred EeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E--cCCCCCEEEEEEe
Confidence 99999999999999999999999999999999999998 579999999999999999887654 3 4677899999999
Q ss_pred CCCC-EEEEEeCCCeEEEEECCCCe
Q psy8748 1920 SSGR-YIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1920 PdG~-~LaSGSsDGsIrIWDL~tge 1943 (2004)
|+++ +|++|+.||+|++|++.+..
T Consensus 309 p~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9886 57789999999999997654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=339.81 Aligned_cols=283 Identities=20% Similarity=0.343 Sum_probs=248.9
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|.+.|++++|+|+|++||| |+.||+|+|||..+ ++.
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s-~s~Dg~v~vWd~~~-------------~~~---------------------------- 98 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVS-SSQDGKVIVWDSFT-------------TNK---------------------------- 98 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEE-EETTSEEEEEETTT-------------CCE----------------------------
T ss_pred cCCCCeEEEEEECCCCCEEEE-EeCCCeEEEEECCC-------------CCc----------------------------
Confidence 458899999999999999999 99999999999866 111
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
...+..|...|.+++|+|+|.++++|+
T Consensus 99 -----------------------------------------------------~~~~~~~~~~v~~~~~sp~g~~lasg~ 125 (354)
T 2pbi_B 99 -----------------------------------------------------EHAVTMPCTWVMACAYAPSGCAIACGG 125 (354)
T ss_dssp -----------------------------------------------------EEEEECSSSCCCEEEECTTSSEEEEES
T ss_pred -----------------------------------------------------ceEEecCCCCEEEEEECCCCCEEEEee
Confidence 112334667899999999999999999
Q ss_pred CCCeEEEEECCCC------ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccce
Q psy8748 1712 LDGKLIIWDTWTG------NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL 1785 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tg------k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~V 1785 (2004)
.|+.+++|++... .....+..|...|.+++|+|++..+++++.||.|++||++++ .....+.+|...+
T Consensus 126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~------~~~~~~~~h~~~v 199 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG------QLLQSFHGHGADV 199 (354)
T ss_dssp TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCE
T ss_pred CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC------eEEEEEcCCCCCe
Confidence 9999999998654 345667889999999999999999999999999999999764 4567788999999
Q ss_pred eeeEEeC---CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q psy8748 1786 SSCRFID---DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF 1862 (2004)
Q Consensus 1786 ssvafsd---d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl 1862 (2004)
.++.+.+ +..+++|+.||.|++||+++++.+. .+.+|...|.+++|+|++++|++|+.||.|++||++.++.+..+
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~-~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~ 278 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ-AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE-EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 9998874 3679999999999999999998774 45789999999999999999999999999999999998877766
Q ss_pred ecC--CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1863 FGH--EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1863 ~~h--~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
..+ ...+.+++|+|++.++++|+.||.|++||+.+++.+..+ ..|...|++++|+|+|++|++|+.||+|++|+
T Consensus 279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l--~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL--FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE--CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE--ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 543 347899999999999999999999999999999888777 46778999999999999999999999999995
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-34 Score=343.41 Aligned_cols=283 Identities=15% Similarity=0.245 Sum_probs=239.3
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
..+....|++++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~------ 171 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG------ 171 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC------
Confidence 34556678999999999999999999999999998888899999999999999999999999999999999865
Q ss_pred eEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeec--cccCCeE---------------------
Q psy8748 1773 KVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQ--AHIGDVV--------------------- 1828 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~--~h~~~It--------------------- 1828 (2004)
.....+.+|...+.++.|+++ ..+++++.||.|++||+++++....+.. .+...+.
T Consensus 172 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~ 251 (420)
T 3vl1_A 172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN 251 (420)
T ss_dssp CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence 344567789999999999965 4689999999999999999987755532 2334444
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCC-EEEEEECCCeEEEEEccCCce-eEEEc
Q psy8748 1829 SISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHPSGL-AFATGSEDKTARLFDIRADQQ-IATYL 1905 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~-~h~s~ItsIafSPdg~-~LaSgS~DGtIrIWDLrtgk~-i~t~~ 1905 (2004)
+++|+|+++++++|+.||.|++||+++++.+..+. .|...|.+++|+|++. ++++|+.||.|++||+++++. +..+.
T Consensus 252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp TTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred ceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence 45557899999999999999999999988777764 4788999999999998 999999999999999998765 44443
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------eeeEEEccCCCCeEEEEEcCCCC---EEEEEECC
Q psy8748 1906 PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT---------THNGVLSGHENRVTSISLSPNGM---ALVTSSWD 1973 (2004)
Q Consensus 1906 ~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg---------e~l~tL~gHs~~VtsLaFSPDg~---~LaSgS~D 1973 (2004)
..+...+.++.+ +++++|++|+.||.|++||+... .....+.+|.+.|.+++|+|++. .++++|.+
T Consensus 332 -~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~ 409 (420)
T 3vl1_A 332 -INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN 409 (420)
T ss_dssp -ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred -ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCC
Confidence 234567777755 57889999999999999998763 22344667899999999999999 88888899
Q ss_pred CeEEEEECCC
Q psy8748 1974 QFVKVWQESN 1983 (2004)
Q Consensus 1974 GtIrIWdlst 1983 (2004)
|.+.+|++++
T Consensus 410 g~~~~~~~~~ 419 (420)
T 3vl1_A 410 NFCALYNLSN 419 (420)
T ss_dssp TEEEEEESCC
T ss_pred ceEEEEeccC
Confidence 9999999875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=338.53 Aligned_cols=296 Identities=23% Similarity=0.315 Sum_probs=241.1
Q ss_pred CCCCCCCeEEEEE-----cc-CCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccc
Q psy8748 1551 PEPCKEQRNAVSF-----HA-CSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRD 1624 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsF-----SP-dGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ 1624 (2004)
..+|++.|++++| +| +|++||| |+.||+|++||+.. ... .+
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~s-gs~D~~v~iWd~~~-------------~~~----~~--------------- 63 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLIS-GSRDKTVMIWKLYE-------------EEQ----NG--------------- 63 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEE-EETTSCEEEEEECS-------------SCC----SS---------------
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEE-EcCCCEEEEEECCc-------------CCc----cc---------------
Confidence 3469999999999 77 9999999 99999999999876 000 00
Q ss_pred cccCCCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCC
Q psy8748 1625 LMMKPTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDS 1704 (2004)
Q Consensus 1625 ll~spdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG 1704 (2004)
....+...+.+|...|++++|+|++
T Consensus 64 -------------------------------------------------------~~~~~~~~l~~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 64 -------------------------------------------------------YFGIPHKALTGHNHFVSDLALSQEN 88 (343)
T ss_dssp -------------------------------------------------------BSEEEEEEECCCSSCEEEEEECSST
T ss_pred -------------------------------------------------------ccccccchhccCCCceEEEEECCCC
Confidence 0011345678899999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
.++++|+.||+|++||+.+++....+.+|...|.+++|+|+++++++|+.||.|++||+.... ........+|...
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~ 164 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC----KFSSAEKENHSDW 164 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE----EEECCTTTSCSSC
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc----eeeeecccCCCce
Confidence 999999999999999999999999999999999999999999999999999999999986321 1111112367888
Q ss_pred eeeeEEeCC-----------CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1785 LSSCRFIDD-----------TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1785 Vssvafsdd-----------~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
+.++.|.+. ..+++++.||.|++||.. ++.. ..+.+|...|.+++|+|+|++|++|+.||.|++||+
T Consensus 165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~-~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIR-YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEE-EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Ccee-EEEcCccccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 999999865 469999999999999943 3333 445789999999999999999999999999999999
Q ss_pred CC-CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeE--EEcC---------CCCCCCeEEEEEcCC
Q psy8748 1854 RE-KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIA--TYLP---------PNKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1854 rs-~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~--t~~~---------~~~~s~ItsLafSPd 1921 (2004)
.. ......+ .+...|.+++|+|++.+++++ .|+.|++||+.+++... .+.. ..+...+.+++|+|+
T Consensus 243 ~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 320 (343)
T 2xzm_R 243 LNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL 320 (343)
T ss_dssp SCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS
T ss_pred CCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC
Confidence 54 3333333 456679999999999887655 58889999998776544 3321 145677999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCC
Q psy8748 1922 GRYIFCGSDDNNVHVWDLLKT 1942 (2004)
Q Consensus 1922 G~~LaSGSsDGsIrIWDL~tg 1942 (2004)
|++|++|+.||.|++|++.++
T Consensus 321 g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 321 GKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SCCEEEEETTSEEEEEEEEEE
T ss_pred CCeEEEecCCceEEEEEEEcc
Confidence 999999999999999998654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-35 Score=401.32 Aligned_cols=382 Identities=18% Similarity=0.304 Sum_probs=305.4
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
..|.+.|++++|+|+|++||+ |+.||+|+|||+.+ ++....+.+|...+.+ +.+.+++
T Consensus 654 ~~h~~~v~~~~~s~~~~~l~s-~~~d~~v~vwd~~~-------------~~~~~~~~~~~~~v~~--------~~~~~~~ 711 (1249)
T 3sfz_A 654 KAHEDEVLCCAFSSDDSYIAT-CSADKKVKIWDSAT-------------GKLVHTYDEHSEQVNC--------CHFTNKS 711 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEE-EETTSEEEEEETTT-------------CCEEEEEECCSSCEEE--------EEECSSS
T ss_pred ccCCCCEEEEEEecCCCEEEE-EeCCCeEEEEECCC-------------CceEEEEcCCCCcEEE--------EEEecCC
Confidence 358889999999999999999 99999999999988 6777777776655543 1222221
Q ss_pred c--------chhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCC
Q psy8748 1632 S--------INIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGD 1703 (2004)
Q Consensus 1632 S--------idi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPD 1703 (2004)
. .+..+..| +. ........+.+|.+.|++++|+|+
T Consensus 712 ~~~~l~sg~~d~~v~vw----------------------------d~---------~~~~~~~~~~~h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 712 NHLLLATGSNDFFLKLW----------------------------DL---------NQKECRNTMFGHTNSVNHCRFSPD 754 (1249)
T ss_dssp SCCEEEEEETTSCEEEE----------------------------ET---------TSSSEEEEECCCSSCEEEEEECSS
T ss_pred CceEEEEEeCCCeEEEE----------------------------EC---------CCcchhheecCCCCCEEEEEEecC
Confidence 1 01111111 00 012345678899999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEe-----------------------------------------------------
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVI----------------------------------------------------- 1730 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti----------------------------------------------------- 1730 (2004)
++++++|+.||.|++||+.+++....+
T Consensus 755 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834 (1249)
T ss_dssp TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence 999999999999999998776544332
Q ss_pred --eCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEE
Q psy8748 1731 --PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVT 1807 (2004)
Q Consensus 1731 --~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~I 1807 (2004)
.+|...|.+++|+|+++++++++.||.|++|++.++ .....+.+|...+.++.|++++ .+++++.||.|++
T Consensus 835 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~------~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~v 908 (1249)
T 3sfz_A 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR------LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908 (1249)
T ss_dssp EECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC------ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEE
Confidence 167788999999999999999999999999999754 4566677888888888887544 5777777888877
Q ss_pred EECC----------------------------------------------------------------------------
Q psy8748 1808 WNLE---------------------------------------------------------------------------- 1811 (2004)
Q Consensus 1808 WDl~---------------------------------------------------------------------------- 1811 (2004)
||+.
T Consensus 909 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~ 988 (1249)
T 3sfz_A 909 WETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII 988 (1249)
T ss_dssp EEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEE
T ss_pred EEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEE
Confidence 7743
Q ss_pred ---CCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC
Q psy8748 1812 ---TGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK 1888 (2004)
Q Consensus 1812 ---tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG 1888 (2004)
++... ....+|...|++++|+|+|+++++++.||.|++||+.+++.. ....|...|.+++|+|++ .+++++.||
T Consensus 989 d~~~~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg 1065 (1249)
T 3sfz_A 989 ELPNNRVF-SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDG 1065 (1249)
T ss_dssp ETTTTSCE-EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSS
T ss_pred EcCCCcee-eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCC
Confidence 22222 223468889999999999999999999999999999998866 455899999999999976 578899999
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEE
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALV 1968 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~La 1968 (2004)
.|++||+.+++....+. .+...+.+++|+|+|+++++|+.||+|++||+.++++...+.+|.+.|++++|+|+|++|+
T Consensus 1066 ~v~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~la 1143 (1249)
T 3sfz_A 1066 TVKVWNVITGRIERDFT--CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1143 (1249)
T ss_dssp EEEEEETTTTCCCEEEE--CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEE
T ss_pred cEEEEECCCCceeEEEc--ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEE
Confidence 99999999999888874 4567899999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEE------EeecCCCCccccc
Q psy8748 1969 TSSWDQFVKVWQESNTIVWKVL------KVYNLEKKTIFCV 2003 (2004)
Q Consensus 1969 SgS~DGtIrIWdlstg~l~k~I------k~~~~h~~~VtsV 2003 (2004)
+|+.||.|++||+.+++....+ .....|.+.|+++
T Consensus 1144 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 1184 (1249)
T 3sfz_A 1144 TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184 (1249)
T ss_dssp EEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE
T ss_pred EEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEE
Confidence 9999999999999988654332 1224566666553
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=325.77 Aligned_cols=287 Identities=24% Similarity=0.424 Sum_probs=253.7
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..+|.+.|++++|+|+|++||+ |+.||+|++|+..+ ++.
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s-~~~dg~i~iw~~~~-------------~~~--------------------------- 57 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLAS-SSADKLIKIWGAYD-------------GKF--------------------------- 57 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTT-------------CCE---------------------------
T ss_pred EcccCCcEEEEEECCCCCEEEE-eeCCCeEEEEeCCC-------------ccc---------------------------
Confidence 3468899999999999999999 99999999999866 111
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
...+.+|...|.+++|+|++++|++|
T Consensus 58 ------------------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~ 83 (312)
T 4ery_A 58 ------------------------------------------------------EKTISGHKLGISDVAWSSDSNLLVSA 83 (312)
T ss_dssp ------------------------------------------------------EEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ------------------------------------------------------chhhccCCCceEEEEEcCCCCEEEEE
Confidence 12345688999999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE
Q psy8748 1711 SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf 1790 (2004)
+.||.|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||.|++||+.++ +....+..|...+.++.|
T Consensus 84 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~ 157 (312)
T 4ery_A 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------KCLKTLPAHSDPVSAVHF 157 (312)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------EEEEEecCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999754 456677889999999999
Q ss_pred eCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCe
Q psy8748 1791 IDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADV 1869 (2004)
Q Consensus 1791 sdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~I 1869 (2004)
+++ ..+++++.||.|++||+.+++........+...+.+++|+|+++++++++.||.|++||+++++.+..+.+|...+
T Consensus 158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 237 (312)
T 4ery_A 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 237 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce
Confidence 865 5688999999999999999988877767778889999999999999999999999999999999999998887654
Q ss_pred EE--EEE-eCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEECC
Q psy8748 1870 NS--VCF-HPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS--DDNNVHVWDLL 1940 (2004)
Q Consensus 1870 ts--Iaf-SPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS--sDGsIrIWDL~ 1940 (2004)
.+ ..+ .+++.++++|+.||.|++||+.+++.+..+ ..|...|.+++|+|+++++++++ .||+|++|+..
T Consensus 238 ~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh--hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 33 233 367889999999999999999999988887 45668899999999999999987 69999999863
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=349.61 Aligned_cols=291 Identities=20% Similarity=0.326 Sum_probs=248.5
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|.+.|++++|+|+|++||| |+.||+|+|||..+ +..
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s-~s~D~~v~iWd~~~-------------~~~---------------------------- 100 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVS-ASQDGRLIVWNALT-------------SQK---------------------------- 100 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEE-EETTSEEEEEETTT-------------TEE----------------------------
T ss_pred cccccEEEEEEEcCCCCEEEE-EeCCCeEEEEECCC-------------Ccc----------------------------
Confidence 468999999999999999999 99999999999877 221
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
...+.+|...|.+++|+|+|++|++|+
T Consensus 101 -----------------------------------------------------~~~~~~h~~~v~~~~~s~~g~~las~~ 127 (380)
T 3iz6_a 101 -----------------------------------------------------THAIKLHCPWVMECAFAPNGQSVACGG 127 (380)
T ss_dssp -----------------------------------------------------EEEEECCCTTCCCCEECTTSSEEEECC
T ss_pred -----------------------------------------------------ceEEecCCCCEEEEEECCCCCEEEEee
Confidence 223456888999999999999999999
Q ss_pred CCCeEEEEECCCCc-------eEEEeeCCCCceEEEEEecC-CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEE-----
Q psy8748 1712 LDGKLIIWDTWTGN-------KTQVIPLRSAWVMSVAFAQS-GNFVACGGMDNMCTVYDLNNRDSTGAAKVIREL----- 1778 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk-------~l~ti~~Ht~~ItsLafSPd-g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl----- 1778 (2004)
.|+.+++||+.+.. ....+.+|.+.|.++.|+|+ +..+++|+.||.|++||+.++. ....+
T Consensus 128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~------~~~~~~~~~~ 201 (380)
T 3iz6_a 128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ------RISIFGSEFP 201 (380)
T ss_dssp SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC------EEEEECCCSS
T ss_pred CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc------EEEEeecccC
Confidence 99999999987532 34557889999999999997 4579999999999999998653 22333
Q ss_pred ecCccceeeeEEe--CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1779 LGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK 1856 (2004)
Q Consensus 1779 ~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~ 1856 (2004)
.+|...+.++.+. +++.+++|+.||.|++||++........+.+|.+.|.+++|+|++++|++|+.||+|++||++++
T Consensus 202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 5688889999986 45679999999999999998554444566789999999999999999999999999999999999
Q ss_pred eEEEEEecCCC-------CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC--CCCCCCeEEEEEcCCCCEEEE
Q psy8748 1857 KCVQTFFGHEA-------DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP--PNKNSGFTSCAVSSSGRYIFC 1927 (2004)
Q Consensus 1857 k~I~tl~~h~s-------~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~--~~~~s~ItsLafSPdG~~LaS 1927 (2004)
+.+..+..+.. .|.+++|+|+|+++++|+.||.|++||+.+++....+.. ..|...|.+++|+|+|++|++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 361 (380)
T 3iz6_a 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361 (380)
T ss_dssp EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence 98888765432 489999999999999999999999999998888776632 457788999999999999999
Q ss_pred EeCCCeEEEEECCCCe
Q psy8748 1928 GSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1928 GSsDGsIrIWDL~tge 1943 (2004)
|+.||+|++|++...+
T Consensus 362 gs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 362 GSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ECTTSCEEEEECCSSS
T ss_pred eeCCCCEEEEecCCCc
Confidence 9999999999986543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=344.75 Aligned_cols=290 Identities=20% Similarity=0.264 Sum_probs=238.4
Q ss_pred ccccccceeEEEEeCCCCEEEEEeC------CCeEEEEECCCCceE----EEeeCCCCceEEEEEecCCCEEEEeecCCe
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSL------DGKLIIWDTWTGNKT----QVIPLRSAWVMSVAFAQSGNFVACGGMDNM 1757 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~------DGtIrVWDl~Tgk~l----~ti~~Ht~~ItsLafSPdg~~LaSGS~DGt 1757 (2004)
..+|.+.|++++|||||++||+|+. ||.|++|+..++... .....|...|.+++|+|++.+ ++++.||.
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCE
Confidence 3579999999999999999999997 788999998776543 334568889999999999765 56778999
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
|++||+.+++.... ......+|...|.+++|+++ ..+++|+.||.|++||+++++.+.. +.+|...|.+++|++++
T Consensus 117 v~lWd~~~~~~~~~--~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~s~~~ 193 (357)
T 4g56_B 117 VELWEILEKESLLV--NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS-YNAHSSEVNCVAACPGK 193 (357)
T ss_dssp EEEC--------CC--CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTC
T ss_pred EEEeeccccceeEE--EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE-EcCCCCCEEEEEEccCC
Confidence 99999987542221 12345578999999999965 5688999999999999999987744 57899999999999987
Q ss_pred C-EEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCC-CCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1837 Q-YFVTGSVDKSCKLWDFREKKCVQTFF--GHEADVNSVCFHPS-GLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1837 ~-~LaSGS~DGsIrIWDlrs~k~I~tl~--~h~s~ItsIafSPd-g~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
. ++++++.||.|++||+++++....+. .+...+.+++|+|+ +.+|++|+.|+.|++||+++++....+. .+...
T Consensus 194 ~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~ 271 (357)
T 4g56_B 194 DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQN 271 (357)
T ss_dssp SSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSC
T ss_pred CceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--cccee
Confidence 5 78999999999999999887665543 56678999999997 5689999999999999999999888874 56678
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q psy8748 1913 FTSCAVSSSG-RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP-NGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1913 ItsLafSPdG-~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSP-Dg~~LaSgS~DGtIrIWdlstg 1984 (2004)
|++++|+|++ ++|++|+.||+|+|||+.+++.+..+ +|.+.|++++|+| ++.+|++||.||+|++|++...
T Consensus 272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 272 ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999987 68999999999999999999887655 7999999999998 8999999999999999999764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=341.39 Aligned_cols=289 Identities=18% Similarity=0.212 Sum_probs=237.3
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECC-----------CCceEEEeeCCCCceEEEEEecCCCEEEEeecCCe
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTW-----------TGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNM 1757 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~-----------Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGt 1757 (2004)
..|...|.+++|+|||++|++++ |+++++||.. ..........+...|.+++|+|++ .+++|+.||.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 45778899999999999999887 6778888621 111111222356779999999985 6789999999
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
|++||+++++.. ........+|.+.|.+++|+++ ..+++|+.||.|++||+.+++.+. .+.+|.+.|.+++|++++
T Consensus 105 v~lWd~~~~~~~--~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~-~~~~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 105 VELWELDENETL--IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS-SYRAHAAQVTCVAASPHK 181 (344)
T ss_dssp EEEEEECTTSSC--EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECSSC
T ss_pred EEEEeccCCCce--eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE-EEcCcCCceEEEEecCCC
Confidence 999999876421 2233456689999999999965 568999999999999999998874 457899999999999987
Q ss_pred C-EEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1837 Q-YFVTGSVDKSCKLWDFREKKCVQTFF--GHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1837 ~-~LaSGS~DGsIrIWDlrs~k~I~tl~--~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
. ++++|+.||.|++||+++++....+. .+...+.+++|+| +++++++|+.||.|++||+++++.+..+. .|...
T Consensus 182 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~--~h~~~ 259 (344)
T 4gqb_B 182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA--VHSQC 259 (344)
T ss_dssp TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE--CCSSC
T ss_pred CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc--CCCCC
Confidence 4 78999999999999999998887764 4556799999999 45788999999999999999999988874 56688
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCe
Q psy8748 1913 FTSCAVSSSG-RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM-ALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1913 ItsLafSPdG-~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~-~LaSgS~DGtIrIWdlstg~ 1985 (2004)
|++++|+|+| ++|++|+.||+|++||+.+++.. .+.+|.+.|++++|+|++. +|++||.||+|++|++.+..
T Consensus 260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9999999998 58999999999999999988765 5689999999999999886 67799999999999998753
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=338.19 Aligned_cols=280 Identities=25% Similarity=0.415 Sum_probs=252.7
Q ss_pred cccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCC
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
.+.+|.+.|++++|+ ++++++|+.||+|++||+.+++....+.+|...|.++.|+ ++.+++|+.||.|++||+.++
T Consensus 154 ~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~ 229 (445)
T 2ovr_B 154 TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG 229 (445)
T ss_dssp ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence 345799999999998 6799999999999999999999999999999999999996 678999999999999999754
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK 1846 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG 1846 (2004)
+....+.+|...+.++.+ ++..+++|+.||.|++||+++++.+.. ..+|...|.+++| +++++++|+.||
T Consensus 230 ------~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~--~~~~l~~~~~d~ 299 (445)
T 2ovr_B 230 ------QCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHT-LQGHTNRVYSLQF--DGIHVVSGSLDT 299 (445)
T ss_dssp ------CEEEEEECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTEEEEE-ECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred ------cEEEEEcCCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCCcEeEE-ecCCCCceEEEEE--CCCEEEEEeCCC
Confidence 456677889999999999 678899999999999999999887744 4688999999999 789999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC-CCCCCeEEEEEcCCCCEE
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP-NKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-~~~s~ItsLafSPdG~~L 1925 (2004)
.|++||+++++.+..+.+|...+.++.++ ++++++|+.||.|++||+++++....+... .+...|.+++|+ ++++
T Consensus 300 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 300 SIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp CEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred eEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence 99999999999999999999999988875 569999999999999999999998888543 366789999995 6899
Q ss_pred EEEeCCCeEEEEECCCCeeeEEE-----ccCCCCeEEEEEcCCCCEEEEEECCCe----EEEEECCCC
Q psy8748 1926 FCGSDDNNVHVWDLLKTTHNGVL-----SGHENRVTSISLSPNGMALVTSSWDQF----VKVWQESNT 1984 (2004)
Q Consensus 1926 aSGSsDGsIrIWDL~tge~l~tL-----~gHs~~VtsLaFSPDg~~LaSgS~DGt----IrIWdlstg 1984 (2004)
++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++.++++|+.||+ |.+||++..
T Consensus 376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999999999999999999888 578899999999999999999999998 999999864
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=324.23 Aligned_cols=295 Identities=24% Similarity=0.378 Sum_probs=251.6
Q ss_pred CCCCCCCeEEEEEccC-CCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1551 PEPCKEQRNAVSFHAC-STLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPd-Gk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
..+|++.|++|+|+|+ |++||| |+.||+|+|||+.. ...
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S-~s~D~~i~vWd~~~-------------~~~-------------------------- 73 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILS-ASRDKTIIMWKLTR-------------DET-------------------------- 73 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEE-EETTSCEEEEEECC-------------SSS--------------------------
T ss_pred ECCccCCEEEEEEeCCCCCEEEE-EcCCCeEEEEECCC-------------CCc--------------------------
Confidence 3579999999999998 689999 99999999999877 000
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVS 1709 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LAS 1709 (2004)
....+...+.+|.+.|++++|+|+|++|++
T Consensus 74 --------------------------------------------------~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 74 --------------------------------------------------NYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp --------------------------------------------------CSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred --------------------------------------------------ccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 000124567889999999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeE
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR 1789 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssva 1789 (2004)
|+.||.|++|+...+........+...+....++++++.+++|+.||.+++||.... ........+|...+..+.
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~-----~~~~~~~~~~~~~v~~~~ 178 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-----CKYTVQDESHSEWVSCVR 178 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-----EEEEECSSSCSSCEEEEE
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC-----ceEEEEeccccCcccceE
Confidence 999999999999999999888889999999999999999999999999999998643 234455667888899998
Q ss_pred EeCC---CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC
Q psy8748 1790 FIDD---TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE 1866 (2004)
Q Consensus 1790 fsdd---~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~ 1866 (2004)
|..+ ..+++++.|+.|++||+.+++... ...+|.+.|++++|+|++++|++|+.||.|++||+++.+.+..+.. .
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~ 256 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKT-NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-G 256 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-S
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCCceee-EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-C
Confidence 8743 347889999999999999988774 4568999999999999999999999999999999999998888865 5
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC-------CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1867 ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP-------PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1867 s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~-------~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
..|.+++|+|++.++ +++.|+.|++||++++.....+.. ..+...|++++|+|+|++|++|+.||.|+|||+
T Consensus 257 ~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 257 DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 689999999988655 556799999999998877666532 346678999999999999999999999999999
Q ss_pred CCCe
Q psy8748 1940 LKTT 1943 (2004)
Q Consensus 1940 ~tge 1943 (2004)
.+|+
T Consensus 336 ~tGt 339 (340)
T 4aow_A 336 TIGT 339 (340)
T ss_dssp EC--
T ss_pred CCcC
Confidence 8875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=322.46 Aligned_cols=291 Identities=24% Similarity=0.359 Sum_probs=260.4
Q ss_pred cccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1681 KLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1681 k~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
..+..+.+.+|.+.|++++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|+++++++|+.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 34567889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC-CCCEE
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP-DGQYF 1839 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP-dg~~L 1839 (2004)
|++.... .......+.+|...+.++.| +++.+++++.||.|++|| .++.. .....|...+.+++|+| +++++
T Consensus 86 ~~~~~~~---~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~~~~-~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 86 VPLFATS---GEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EGSLV-YNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp EETTCCT---TSCC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TTEEE-EEEECCSSCEEEEEEEETTTTEE
T ss_pred EEeeecC---CCCcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CCcEE-EecccCCCceeEEEEccCCCCEE
Confidence 9997643 33445667889999999999 677899999999999999 44444 44567899999999998 89999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEE
Q psy8748 1840 VTGSVDKSCKLWDFREKKCVQTFFG-HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAV 1918 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs~k~I~tl~~-h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLaf 1918 (2004)
++++.||.|++|| ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+. .+...+.+++|
T Consensus 159 ~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~ 233 (313)
T 3odt_A 159 LTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE--GHESFVYCIKL 233 (313)
T ss_dssp EEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEE
T ss_pred EEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh--cCCceEEEEEE
Confidence 9999999999999 4566677776 899999999999998 9999999999999999999888874 56688999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1919 SPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
+|++ .+++|+.||.|++||+.+++....+..|...|.+++|+|++. +++++.||.|++|++.+++.
T Consensus 234 ~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 234 LPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp CTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred ecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 9999 588999999999999999999999999999999999999998 66799999999999998754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=338.81 Aligned_cols=297 Identities=18% Similarity=0.236 Sum_probs=261.7
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc------eEEEeeCCCCceEEEEEecC----C---CEEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN------KTQVIPLRSAWVMSVAFAQS----G---NFVA 1750 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk------~l~ti~~Ht~~ItsLafSPd----g---~~La 1750 (2004)
....+.+|.+.|++++|+| ++|++|+.||.|++||+.+++ ....+..|...|.+++|+|+ + ++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 4567889999999999998 799999999999999999988 78888999999999999999 9 9999
Q ss_pred EeecCCeEEEEEcCCCCCCCcceEEEEEecC-----ccceeeeEEe----CC-Cc-EEEeecCCeEEEEECCC------C
Q psy8748 1751 CGGMDNMCTVYDLNNRDSTGAAKVIRELLGY-----EGFLSSCRFI----DD-TT-LLTGSGDMKIVTWNLET------G 1813 (2004)
Q Consensus 1751 SGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh-----~~~Vssvafs----dd-~~-LlSgS~DGtI~IWDl~t------g 1813 (2004)
+++.||.|++|++..+... .......+..| ...+.++.|. ++ .. +++++.||.|++||+.+ +
T Consensus 86 s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDET-KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEETTSCEEEEEEEECTTT-CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEcCCCCEEEEEccCCccc-ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999865321 11225566677 5899999998 54 56 88899999999999988 5
Q ss_pred ceeE-----Eee------ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEec---C---CCCeEEEEEeC
Q psy8748 1814 QRIH-----EVA------QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG---H---EADVNSVCFHP 1876 (2004)
Q Consensus 1814 ~~i~-----~il------~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~---h---~s~ItsIafSP 1876 (2004)
+.+. .+. ..|...|.+++|+|++ ++++++.||.|++||+++++.+..+.. | ...|.+++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence 5543 332 4578899999999999 999999999999999999999999988 8 99999999999
Q ss_pred CCCEEEEEECC---CeEEEEEccCCceeEEEcCCC-----------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q psy8748 1877 SGLAFATGSED---KTARLFDIRADQQIATYLPPN-----------KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT 1942 (2004)
Q Consensus 1877 dg~~LaSgS~D---GtIrIWDLrtgk~i~t~~~~~-----------~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg 1942 (2004)
++++|++++.| |.|++||+++++.+..+.... +...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999 999999999999888875321 6688999999999999999999999999999999
Q ss_pred eeeEEEc------cC---------------CCCeEEEEEcCCC----------CEEEEEECCCeEEEEECCCC
Q psy8748 1943 THNGVLS------GH---------------ENRVTSISLSPNG----------MALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1943 e~l~tL~------gH---------------s~~VtsLaFSPDg----------~~LaSgS~DGtIrIWdlstg 1984 (2004)
+.+..+. +| ...|++++|+|++ ++|++|+.||.|++|++.+|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999998 88 9999999999998 79999999999999999876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=363.21 Aligned_cols=329 Identities=21% Similarity=0.309 Sum_probs=286.2
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|.+.|++++|||+|++||+ |+.||+|+|||+.+ ++.
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~-~~~~g~v~iwd~~~-------------~~~---------------------------- 47 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLT-TLYSGRVEIWNYET-------------QVE---------------------------- 47 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEE-EETTSEEEEEETTT-------------TEE----------------------------
T ss_pred ecCCCceEEEEECCCCCEEEE-EeCCCEEEEEECCC-------------Cce----------------------------
Confidence 458889999999999999999 99999999999877 221
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
...+.+|.+.|++++|+|++++|++|+
T Consensus 48 -----------------------------------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 48 -----------------------------------------------------VRSIQVTETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp -----------------------------------------------------EEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred -----------------------------------------------------EEEEecCCCcEEEEEEeCCCCEEEEEe
Confidence 223456889999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.||.|++||+.+++.+..+.+|.+.|.+++|+|+++++++|+.||.|++|+++++ ......+.+|...+.++.|+
T Consensus 75 ~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-----~~~~~~~~~~~~~v~~~~~~ 149 (814)
T 3mkq_A 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-----WALEQTFEGHEHFVMCVAFN 149 (814)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT-----SEEEEEEECCSSCEEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC-----ceEEEEEcCCCCcEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999753 25567788899999999999
Q ss_pred C--CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC--CCCEEEEEECCCeEEEEECCCCeEEEEEecCCC
Q psy8748 1792 D--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP--DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA 1867 (2004)
Q Consensus 1792 d--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP--dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s 1867 (2004)
+ +..+++++.||.|++||+.++.........+...+.+++|+| +++++++|+.||.|++||+++++.+..+.+|..
T Consensus 150 p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 229 (814)
T 3mkq_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229 (814)
T ss_dssp TTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 7 457999999999999999988877666666668999999999 999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeee
Q psy8748 1868 DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR--YIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1868 ~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~--~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
.|.+++|+|+++++++++.||.|++||+.+++....+. .+...+.+++|+|+|. ++++| .++.+.+|++..+...
T Consensus 230 ~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 306 (814)
T 3mkq_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN--VGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPT 306 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC--CSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCC
T ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCce
Confidence 99999999999999999999999999999999888874 4457899999999987 45555 5667888887543221
Q ss_pred EE-------------------------------------------EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1946 GV-------------------------------------------LSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1946 ~t-------------------------------------------L~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
.. +..+...+.+++|+|+|+++++++ ||.+.+|++.
T Consensus 307 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~ 385 (814)
T 3mkq_A 307 LSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTAL 385 (814)
T ss_dssp EEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred eEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECc
Confidence 11 123445688999999999999998 8999999986
Q ss_pred CC
Q psy8748 1983 NT 1984 (2004)
Q Consensus 1983 tg 1984 (2004)
..
T Consensus 386 ~~ 387 (814)
T 3mkq_A 386 AW 387 (814)
T ss_dssp TT
T ss_pred cc
Confidence 54
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=337.36 Aligned_cols=284 Identities=18% Similarity=0.259 Sum_probs=244.8
Q ss_pred cccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEe--cCCCEEEEeecCCeEEEEEcC
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFA--QSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafS--Pdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
.+.+|.+.|++++|++++ ++++|+.||+|++||+.+++....+.+|...|.+++|+ ++++++++|+.||.|++||+.
T Consensus 157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence 355799999999999988 99999999999999999999999999999999999998 477899999999999999998
Q ss_pred CCCCCCc-----------------ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCe
Q psy8748 1765 NRDSTGA-----------------AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDV 1827 (2004)
Q Consensus 1765 t~~~~~~-----------------~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~I 1827 (2004)
....... ........+|...+.++. .++..+++++.||.|++||+.+++.+.. +.+|...|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~v 313 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-GHGNIVVSGSYDNTLIVWDVAQMKCLYI-LSGHTDRI 313 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE-EETTEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCCE
Confidence 7542211 012556777888888774 3567899999999999999999888744 46899999
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC
Q psy8748 1828 VSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP 1907 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~ 1907 (2004)
.+++|+|+++++++|+.||.|++||+++++.+..+.+|...|.+++|+ +.++++++.||.|++||++++.......
T Consensus 314 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-- 389 (464)
T 3v7d_B 314 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-- 389 (464)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec--
Confidence 999999999999999999999999999999999999999999999997 5799999999999999999888776663
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1908 NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGV-LSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1908 ~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~t-L~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
+...+..++|+++++++++|+ ||.|++||+.+++.+.. +..|.+.|.+++|+ ++.++++++.||.+.+|-
T Consensus 390 -~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 390 -HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp -CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred -CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 345677889999999999998 89999999999999876 67789999999997 445566667787766554
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=334.39 Aligned_cols=303 Identities=22% Similarity=0.324 Sum_probs=246.4
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCc
Q psy8748 1553 PCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSS 1632 (2004)
Q Consensus 1553 ~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgS 1632 (2004)
.|...|+|++|||||++||+ |+ |+++++|++.+ ++....+.++...... +
T Consensus 62 ~h~~~V~~v~fspdg~~la~-g~-~~~v~i~~~~~-------------g~~~~~l~~~~~~~~~------------~--- 111 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLAT-GC-NKTTQVYRVSD-------------GSLVARLSDDSAANKD------------P--- 111 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEE-EC-BSCEEEEETTT-------------CCEEEEECC-----------------------
T ss_pred CCCCEEEEEEECCCCCEEEE-Ec-CCcEEEEEecC-------------CCEEEEecCccccccc------------c---
Confidence 48889999999999999999 76 78999999988 5544444331110000 0
Q ss_pred chhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeC
Q psy8748 1633 INIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSL 1712 (2004)
Q Consensus 1633 idi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~ 1712 (2004)
... .......+...|++++|+|+|++|++|+.
T Consensus 112 ----------------~~~--------------------------------~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 112 ----------------ENL--------------------------------NTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp ---------------------------------------------------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred ----------------ccc--------------------------------cccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 000 00011234567999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC
Q psy8748 1713 DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID 1792 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd 1792 (2004)
||.|++||+.+++....+.+|...|.+++|+|++++|++|+.||.|++||+.++ .....+ .+...+.++.+++
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~------~~~~~~-~~~~~v~~~~~~~ 216 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG------QCSLTL-SIEDGVTTVAVSP 216 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------EEEEEE-ECSSCEEEEEECS
T ss_pred CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC------eeEEEE-EcCCCcEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999764 223333 3456788888875
Q ss_pred --CCcEEEeecCCeEEEEECCCCceeEEee------ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCC--------
Q psy8748 1793 --DTTLLTGSGDMKIVTWNLETGQRIHEVA------QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK-------- 1856 (2004)
Q Consensus 1793 --d~~LlSgS~DGtI~IWDl~tg~~i~~il------~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~-------- 1856 (2004)
+..+++|+.||.|++||..++..+.... .+|...|.+++|+|+++++++|+.||.|++||+++.
T Consensus 217 ~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 217 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence 4579999999999999999988765442 478899999999999999999999999999999753
Q ss_pred ----eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC------CCCEEE
Q psy8748 1857 ----KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS------SGRYIF 1926 (2004)
Q Consensus 1857 ----k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP------dG~~La 1926 (2004)
.+...+.+|...|.+++|+|++.+|++|+.||.|++||.++++.+..+. .|...|.+++|++ ++++|+
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~--~h~~~v~~v~~~~~~~~~p~~~~l~ 374 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--GHRNSVISVAVANGSSLGPEYNVFA 374 (393)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC--CCCCCEEEEEecCCcCcCCCCCEEE
Confidence 3456778999999999999999999999999999999999999887774 5668899999986 688999
Q ss_pred EEeCCCeEEEEECCCC
Q psy8748 1927 CGSDDNNVHVWDLLKT 1942 (2004)
Q Consensus 1927 SGSsDGsIrIWDL~tg 1942 (2004)
+|+.||+|++|++...
T Consensus 375 sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 375 TGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEETTSEEEEEEEEEC
T ss_pred EECCCCcEEECccccc
Confidence 9999999999997543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=327.48 Aligned_cols=290 Identities=18% Similarity=0.218 Sum_probs=253.6
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
+..|.++|++++|+|++++|++|+.||.|++||+.+++ ....+.+|...|.+++|+|+++++++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45599999999999999999999999999999999987 8888999999999999999999999999999999999975
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCce---eEEeeccccCCeEEEEECCCCCEEEE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQR---IHEVAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~---i~~il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
++ .........|...+.++.|+++ ..+++++.||.|++||++.+.. .......|...|.+++|+|+++++++
T Consensus 84 ~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 84 RT----WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp TE----EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred Ce----eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 42 2233445678889999999855 5688999999999999988763 33445678899999999999999999
Q ss_pred EECCCeEEEEEC------------------CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEE
Q psy8748 1842 GSVDKSCKLWDF------------------REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIAT 1903 (2004)
Q Consensus 1842 GS~DGsIrIWDl------------------rs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t 1903 (2004)
|+.||.|++||+ ..++.+..+..|...|.+++|+|+++++++++.||.|++||+++++.+..
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 239 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 239 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence 999999999995 46788888989999999999999999999999999999999999998888
Q ss_pred EcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--Cee--------------------------------e----
Q psy8748 1904 YLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK--TTH--------------------------------N---- 1945 (2004)
Q Consensus 1904 ~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t--ge~--------------------------------l---- 1945 (2004)
+. .+...+.+++|+|+++++++| .||.|++|++.+ +.. .
T Consensus 240 ~~--~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (372)
T 1k8k_C 240 LA--SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA 316 (372)
T ss_dssp EE--CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred Ec--cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcc
Confidence 85 455789999999999998888 999999999987 421 0
Q ss_pred --EEE-ccCCCCeEEEEEc-CCC---CEEEEEECCCeEEEEECCCC
Q psy8748 1946 --GVL-SGHENRVTSISLS-PNG---MALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1946 --~tL-~gHs~~VtsLaFS-PDg---~~LaSgS~DGtIrIWdlstg 1984 (2004)
..+ .+|.+.|++++|+ ++| .+|++|+.||.|++|++.++
T Consensus 317 ~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 317 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 223 4899999999976 666 99999999999999999765
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=330.05 Aligned_cols=291 Identities=18% Similarity=0.282 Sum_probs=244.5
Q ss_pred cccccccccccceeEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEee--CCCCceEEEEEec-CCCEEEEeecCCeE
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDS-RHCVSGSLDGKLIIWDTWTGNKTQVIP--LRSAWVMSVAFAQ-SGNFVACGGMDNMC 1758 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG-~~LASGS~DGtIrVWDl~Tgk~l~ti~--~Ht~~ItsLafSP-dg~~LaSGS~DGtI 1758 (2004)
.....+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| +++++++++.||.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 3456788999999999999999 999999999999999999998887775 6999999999999 78999999999999
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~ 1837 (2004)
++||+... .........++...+.++.|+++ ..+++++.||.|++||++ ++.+ ..+..|...|.+++|+|+++
T Consensus 144 ~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~-~~~~~h~~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 144 TLRDFSGS----VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEI-FKEKLHKAKVTHAEFNPRCD 217 (383)
T ss_dssp EEEETTSC----EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEE-EEEECSSSCEEEEEECSSCT
T ss_pred EEEECCCC----ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEE-EEeccCCCcEEEEEECCCCC
Confidence 99999742 22222333344578999999965 568899999999999994 5554 34468999999999999999
Q ss_pred -EEEEEECCCeEEEEECCC----CeEEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccCCceeEEEcCCC---
Q psy8748 1838 -YFVTGSVDKSCKLWDFRE----KKCVQTFFGHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRADQQIATYLPPN--- 1908 (2004)
Q Consensus 1838 -~LaSGS~DGsIrIWDlrs----~k~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~--- 1908 (2004)
++++|+.||.|++||+++ +..+..+ +|...|.+++|+| ++.+|++++.||.|++||+++++....+..+.
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 296 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ 296 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc
Confidence 999999999999999987 6666666 7999999999999 99999999999999999999887765553221
Q ss_pred --C----------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc--CCCCeEEEEEcCCCCEEEEEECCC
Q psy8748 1909 --K----------NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG--HENRVTSISLSPNGMALVTSSWDQ 1974 (2004)
Q Consensus 1909 --~----------~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g--Hs~~VtsLaFSPDg~~LaSgS~DG 1974 (2004)
+ ...+..++|+|+|++ +|+.||.|++||+.+++.+..+.+ |...+..++|+|++++|++|+ ||
T Consensus 297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence 1 123445666677666 677899999999999999999987 567788889999999999998 99
Q ss_pred eEEEEECCC
Q psy8748 1975 FVKVWQESN 1983 (2004)
Q Consensus 1975 tIrIWdlst 1983 (2004)
.|++|++++
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 999999975
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=323.72 Aligned_cols=248 Identities=18% Similarity=0.255 Sum_probs=200.0
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC-------CceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT-------GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T-------gk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
+|.+.|++++|+|++++|++|+.||+|++||... .+....+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 3999999999999999999999999999999853 356677889999999999999999999999999999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCc-eeEEeeccccCCeEEEEECCC--CCE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQ-RIHEVAQAHIGDVVSISLSPD--GQY 1838 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~-~i~~il~~h~~~ItsLafSPd--g~~ 1838 (2004)
+.... ........+.+|...+.++.|+++ ..+++++.||.|++||..++. .....+.+|.+.|.+++|+|+ +.+
T Consensus 136 ~~~~~--~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 136 TDESG--EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp CCTTC--CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred ccCCC--CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE
Confidence 95321 134566778899999999999865 568999999999999987763 223456789999999999998 679
Q ss_pred EEEEECCCeEEEEECCCC--------eEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce--eEEEcCC
Q psy8748 1839 FVTGSVDKSCKLWDFREK--------KCVQTFFG-HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ--IATYLPP 1907 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlrs~--------k~I~tl~~-h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~--i~t~~~~ 1907 (2004)
+++|+.||+|++||++.+ .....+.. |...|.+++|++++ ++++++.||.|++||..++.. .... ..
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~ 291 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-AL 291 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SC
T ss_pred EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cc
Confidence 999999999999998754 34445554 88999999999765 899999999999999987742 2232 23
Q ss_pred CCCC-CeEEEEEcC--CCCEEEEEeCCCeEEEEECCC
Q psy8748 1908 NKNS-GFTSCAVSS--SGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1908 ~~~s-~ItsLafSP--dG~~LaSGSsDGsIrIWDL~t 1941 (2004)
.|.. .|.+++|+| ++++|++|+.||+|++||+.+
T Consensus 292 ~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 292 CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 4444 799999999 789999999999999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=354.94 Aligned_cols=290 Identities=23% Similarity=0.360 Sum_probs=251.0
Q ss_pred ccccccccccceeEEEEeCCC-CEEEEEeCCCeEEEEECCCC-----ceEEEeeCCCCceEEEEEecCCCEEEEeecCCe
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDS-RHCVSGSLDGKLIIWDTWTG-----NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNM 1757 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG-~~LASGS~DGtIrVWDl~Tg-----k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGt 1757 (2004)
....+++|++.|++++|+|++ ++|+||+.||+|++||+.++ .....+.+|...|.+++|+|++++|++|+.||.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 345789999999999999864 79999999999999998763 345678899999999999999999999999999
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEe--eccccCCeEEEEECC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEV--AQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~i--l~~h~~~ItsLafSP 1834 (2004)
|++||+.++ .....+.+|...|.++.|+++ ..+++++.|+.|++||.......... ..+|...|.+++|+|
T Consensus 454 v~vwd~~~~------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 454 LRLWDLAAG------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp EEEEETTTT------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred EEEEECCCC------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 999999754 566778899999999999855 56999999999999998755433211 246888999999999
Q ss_pred CC--CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1835 DG--QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1835 dg--~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
++ ..+++|+.||.|++||+++++....+.+|...|.+++|+|+++++++|+.||.|++||+++++.+..+. +...
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~---~~~~ 604 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE---ANSV 604 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB---CSSC
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec---CCCc
Confidence 86 689999999999999999999999999999999999999999999999999999999999998876653 3467
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCC-------------------CCeEEEEEcCCCCEEEEEECC
Q psy8748 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHE-------------------NRVTSISLSPNGMALVTSSWD 1973 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs-------------------~~VtsLaFSPDg~~LaSgS~D 1973 (2004)
+.+++|+|++.++++++ ++.|++||+.++..+..+..+. ..+++++|+|+|++|++|+.|
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D 683 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD 683 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC
Confidence 99999999999888775 5569999999999887775332 137899999999999999999
Q ss_pred CeEEEEECCC
Q psy8748 1974 QFVKVWQESN 1983 (2004)
Q Consensus 1974 GtIrIWdlst 1983 (2004)
|.|++|++..
T Consensus 684 g~i~iW~i~~ 693 (694)
T 3dm0_A 684 GVIRVWGIGR 693 (694)
T ss_dssp SEEEEEEC--
T ss_pred CeEEEEeccC
Confidence 9999999863
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=312.56 Aligned_cols=295 Identities=19% Similarity=0.298 Sum_probs=255.1
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|++.|++++|+|+|++||+ |+.||.|++||+.+ ++.
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~-------------~~~---------------------------- 66 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFS-CSKDSSASVWYSLN-------------GER---------------------------- 66 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEE-EESSSCEEEEETTT-------------CCE----------------------------
T ss_pred EEeeceEEEEEEcCCCCEEEE-EeCCCEEEEEeCCC-------------chh----------------------------
Confidence 458899999999999999999 99999999999877 111
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
...+.+|.+.|++++|+|++++|++++
T Consensus 67 -----------------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 67 -----------------------------------------------------LGTLDGHTGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp -----------------------------------------------------EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -----------------------------------------------------hhhhhhcCCcEEEEEEcCCCCEEEEEe
Confidence 223456999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC-----CeEEEEEcCCCCCCCcc-----eEEEEEecC
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD-----NMCTVYDLNNRDSTGAA-----KVIRELLGY 1781 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D-----GtIrVWDl~t~~~~~~~-----k~i~sl~gh 1781 (2004)
.||.|++||+.+++....+. +...|.+++|+|+++++++++.+ |.|++|++......... ........+
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 94 ADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp TTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred CCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 99999999999999999888 88899999999999999999999 99999999865432211 122344455
Q ss_pred cc--ceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1782 EG--FLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC 1858 (2004)
Q Consensus 1782 ~~--~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~ 1858 (2004)
.. .+.++.|+++ ..+++++.||.|++||+.++.........|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence 55 8899999854 56889999999999999985444456678899999999999999999999999999999999998
Q ss_pred EEEEecCCCCeEEEEEeCCCCEEEEEECCC--------------eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1859 VQTFFGHEADVNSVCFHPSGLAFATGSEDK--------------TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1859 I~tl~~h~s~ItsIafSPdg~~LaSgS~DG--------------tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
+..+. +...+.+++|+|+++++++++.++ .+++||..+++....+. .+...|.+++|+|+|++
T Consensus 253 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 253 LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ--GHFGPLNTVAISPQGTS 329 (369)
T ss_dssp EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE--CCSSCEEEEEECTTSSE
T ss_pred eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee--cccCcEEEEEECCCCCE
Confidence 88876 788999999999999999999988 89999999999888874 56688999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeee
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l 1945 (2004)
|++|+.||.|++|++.++...
T Consensus 330 l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 330 YASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp EEEEETTSEEEEEEECHHHHT
T ss_pred EEEEcCCCeEEEEECccccch
Confidence 999999999999999765443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=320.98 Aligned_cols=295 Identities=16% Similarity=0.230 Sum_probs=246.3
Q ss_pred cccccccccceeEEEEeCCCCEE-EEEeC---CCeEEEEECCCCceEEEe-eCCCCceEEEEEecC---CCEEEEeecCC
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHC-VSGSL---DGKLIIWDTWTGNKTQVI-PLRSAWVMSVAFAQS---GNFVACGGMDN 1756 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~L-ASGS~---DGtIrVWDl~Tgk~l~ti-~~Ht~~ItsLafSPd---g~~LaSGS~DG 1756 (2004)
...+.+|.+.|++++|+|++..+ ++|+. ||.|++||+.+++..... ..|...|.+++|+|+ ++++++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34567899999999999999755 45655 899999999998876543 368899999999998 69999999999
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-------CCCcEEEeecCCeEEEEECCCCceeEEeeccccC----
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-------DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIG---- 1825 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-------dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~---- 1825 (2004)
.|++|++..+. .....+.+|...+.++.|. ++..+++++.||.|++||+.++.........+.+
T Consensus 91 ~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 91 NLHIWNLEAPE-----MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp CEEEECTTSCS-----SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred eEEEEeCCCCC-----ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 99999998653 2456677899999999664 3557999999999999999988733333334333
Q ss_pred CeEEEE----ECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeC---CCCEEEEEECCCeEEEEEccCC
Q psy8748 1826 DVVSIS----LSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHP---SGLAFATGSEDKTARLFDIRAD 1898 (2004)
Q Consensus 1826 ~ItsLa----fSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSP---dg~~LaSgS~DGtIrIWDLrtg 1898 (2004)
.+.+++ |+++++++++++.||.|++||+++++.... ..|...|.+++|+| ++.++++++.||.|++||++++
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence 789998 788999999999999999999999887544 57889999999999 9999999999999999999877
Q ss_pred ceeEEEc---CCCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-------------------eeeEEEccCCCCe
Q psy8748 1899 QQIATYL---PPNKNSGFTSCAVSSSGR-YIFCGSDDNNVHVWDLLKT-------------------THNGVLSGHENRV 1955 (2004)
Q Consensus 1899 k~i~t~~---~~~~~s~ItsLafSPdG~-~LaSGSsDGsIrIWDL~tg-------------------e~l~tL~gHs~~V 1955 (2004)
+....+. ...+...|.+++|+|+++ ++++|+.||.|++||+.++ +.+..+.+|.+.|
T Consensus 245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v 324 (357)
T 3i2n_A 245 HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI 324 (357)
T ss_dssp ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE
T ss_pred CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe
Confidence 6554432 125678899999999998 8999999999999999753 4667788999999
Q ss_pred EEEEEcCCCCEEE-EEECCCeEEEEECCCCe
Q psy8748 1956 TSISLSPNGMALV-TSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1956 tsLaFSPDg~~La-SgS~DGtIrIWdlstg~ 1985 (2004)
++++|+|++++|+ +++.||.|++|++.+..
T Consensus 325 ~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 325 SSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred eEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999999999998 89999999999998753
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-32 Score=363.39 Aligned_cols=375 Identities=14% Similarity=0.088 Sum_probs=265.3
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
|+..|++++|+| |++||+ |+.|++|++||+.+ ++++..+.. ...+ ..+.+.|++..
T Consensus 57 ~~~~V~~l~fsp-g~~L~S-~s~D~~v~lWd~~~-------------~~~~~~~~~-~~~V--------~~v~~sp~g~~ 112 (902)
T 2oaj_A 57 DRSAIKEMRFVK-GIYLVV-INAKDTVYVLSLYS-------------QKVLTTVFV-PGKI--------TSIDTDASLDW 112 (902)
T ss_dssp SCCCEEEEEEET-TTEEEE-EETTCEEEEEETTT-------------CSEEEEEEC-SSCE--------EEEECCTTCSE
T ss_pred CCCCEEEEEEcC-CCEEEE-EECcCeEEEEECCC-------------CcEEEEEcC-CCCE--------EEEEECCCCCE
Confidence 667899999999 999999 99999999999988 444444431 1112 12223333311
Q ss_pred ------hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccc---ccc-ccccccccceeEEEEeCC
Q psy8748 1634 ------NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKL---MPK-KSLKGHINKVNSVHYSGD 1703 (2004)
Q Consensus 1634 ------di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~---~pi-~sL~GHt~~VtsLaFSPD 1703 (2004)
+..+..|.. .. .....+.. ... ..+.+|.+.|++++|+|+
T Consensus 113 l~sgs~dg~V~lwd~----------------------------~~--~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 113 MLIGLQNGSMIVYDI----------------------------DR--DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp EEEEETTSCEEEEET----------------------------TT--TEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred EEEEcCCCcEEEEEC----------------------------CC--CccccceeccccccccccccCCCCeEEEEEccC
Confidence 111111200 00 00000000 000 345789999999999996
Q ss_pred -CCEEEEEeCCCeEEEEECCCCceEEEeeCC------------------CCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1704 -SRHCVSGSLDGKLIIWDTWTGNKTQVIPLR------------------SAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1704 -G~~LASGS~DGtIrVWDl~Tgk~l~ti~~H------------------t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
+..+++|+.||.| +||+.+++....+..| ...|.+++|+|+|++|++|+.||.|++||+.
T Consensus 163 ~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 163 DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN 241 (902)
T ss_dssp EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 5789999999999 9999999988888766 4779999999999999999999999999997
Q ss_pred CCCCCCcceEEEEE---e-------------cCccceeeeEE--------------------------------------
Q psy8748 1765 NRDSTGAAKVIREL---L-------------GYEGFLSSCRF-------------------------------------- 1790 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl---~-------------gh~~~Vssvaf-------------------------------------- 1790 (2004)
+++.... +.+ . .+...|.+++|
T Consensus 242 ~g~~~~~----r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 242 SGHMIMA----RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp TCCEEEE----ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred CCcEEEE----EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 6432100 000 0 00111122221
Q ss_pred ---------------------------------eC-----------CCcEEEeecCCeEEEEECCCCceeEE------ee
Q psy8748 1791 ---------------------------------ID-----------DTTLLTGSGDMKIVTWNLETGQRIHE------VA 1820 (2004)
Q Consensus 1791 ---------------------------------sd-----------d~~LlSgS~DGtI~IWDl~tg~~i~~------il 1820 (2004)
.. ...+++++.||.|++||+.++..... ..
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l 397 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNL 397 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGG
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcc
Confidence 11 11356667778888888876643221 01
Q ss_pred ----------------------------------ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEE----EE-
Q psy8748 1821 ----------------------------------QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCV----QT- 1861 (2004)
Q Consensus 1821 ----------------------------------~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I----~t- 1861 (2004)
.+|...+.+++|+|+++++++|+.||+|++||+.++... ..
T Consensus 398 ~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~ 477 (902)
T 2oaj_A 398 SWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEV 477 (902)
T ss_dssp TTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEE
T ss_pred cccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEe
Confidence 223333444556789999999999999999999876421 11
Q ss_pred -Ee-----cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc------------------------------------
Q psy8748 1862 -FF-----GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ------------------------------------ 1899 (2004)
Q Consensus 1862 -l~-----~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk------------------------------------ 1899 (2004)
+. +|...|.+++|+|++++|++|+.||+|++||+.+++
T Consensus 478 ~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (902)
T 2oaj_A 478 NLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRA 557 (902)
T ss_dssp EHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGC
T ss_pred echhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccC
Confidence 11 788999999999999999999999999999998763
Q ss_pred ---------eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-----Ec-cCCCCeEEEEEc---
Q psy8748 1900 ---------QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGV-----LS-GHENRVTSISLS--- 1961 (2004)
Q Consensus 1900 ---------~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~t-----L~-gHs~~VtsLaFS--- 1961 (2004)
++..+ ..|...|++++|+|+| +||+|+.||+|++||+++...+.. +. +|.+.|++++|+
T Consensus 558 ~~~~~~g~~~~~~l--~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~ 634 (902)
T 2oaj_A 558 PTGVRQGFMPSTAV--HANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIME 634 (902)
T ss_dssp CTTCSEEEEEEEEE--CCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEE
T ss_pred CCCCCCccceeEEE--EcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEe
Confidence 13333 4577899999999999 999999999999999988876642 22 899999999999
Q ss_pred --CCC---CEEEEEECCCeEEEEEC---CCCeEEEEE
Q psy8748 1962 --PNG---MALVTSSWDQFVKVWQE---SNTIVWKVL 1990 (2004)
Q Consensus 1962 --PDg---~~LaSgS~DGtIrIWdl---stg~l~k~I 1990 (2004)
||| .+|++|+.||+|++|++ .+|+....+
T Consensus 635 ~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~ 671 (902)
T 2oaj_A 635 YGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQL 671 (902)
T ss_dssp CTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEE
T ss_pred cCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEe
Confidence 885 89999999999999999 666544433
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=329.03 Aligned_cols=291 Identities=23% Similarity=0.369 Sum_probs=250.2
Q ss_pred ccccccccee--EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC-CCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1687 SLKGHINKVN--SVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL-RSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1687 sL~GHt~~Vt--sLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
...+|.+.+. +++|+ +..+++++.||.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|++||+
T Consensus 86 ~~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp ECTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eCCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 3447776654 45555 45688889999999999999998888776 7899999999999999999999999999999
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
.++ .....+.+|...+.++.| ++..+++++.||.|++||++..........+|.+.|.+++|+|++++|++|+
T Consensus 164 ~~~------~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 164 ESQ------TKLRTMAGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp TTC------CEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cCC------eEEEEecCCCCceEEEEE-CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 754 456777899999999999 5678999999999999999966555566778999999999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCC-EEEEEE--CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC
Q psy8748 1844 VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL-AFATGS--EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~-~LaSgS--~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP 1920 (2004)
.||.|++||+++++.+..+..|...|.+++|+|++. .+++++ .||.|++||+++++....+. +...+.+++|+|
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~s~ 313 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---AGSQVTSLIWSP 313 (401)
T ss_dssp TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---CSSCEEEEEECS
T ss_pred CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---CCCcEEEEEECC
Confidence 999999999999999999999999999999999764 555654 69999999999999888874 346799999999
Q ss_pred CCCEEEEE--eCCCeEEEEECCCCeeeE--EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q psy8748 1921 SGRYIFCG--SDDNNVHVWDLLKTTHNG--VLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKV 1989 (2004)
Q Consensus 1921 dG~~LaSG--SsDGsIrIWDL~tge~l~--tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~ 1989 (2004)
+|++++++ +.||.|++||+.++.... .+.+|.+.|.+++|+|++.+|++++.||.|++|++.+++....
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 99999994 489999999999866554 4678999999999999999999999999999999998865443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-33 Score=338.34 Aligned_cols=298 Identities=15% Similarity=0.261 Sum_probs=245.4
Q ss_pred cccccccc-cccccceeEEEEeC-CCCEEEEEeCCCeEEEEECCC---Cc---eEEEeeCCCCceEEEEEecCCCEEEEe
Q psy8748 1681 KLMPKKSL-KGHINKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWT---GN---KTQVIPLRSAWVMSVAFAQSGNFVACG 1752 (2004)
Q Consensus 1681 k~~pi~sL-~GHt~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~T---gk---~l~ti~~Ht~~ItsLafSPdg~~LaSG 1752 (2004)
....+..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +. ....+ .|...|.+++|+|++++|++|
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEE
T ss_pred cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEE
Confidence 34556677 89999999999999 999999999999999999876 43 23333 489999999999999999999
Q ss_pred ecCCeEEEEEcC---CCCCCCc--ceEEEEEe--c--CccceeeeEEe---CCCcEEEeecCCeEEEEECCCCceeEEee
Q psy8748 1753 GMDNMCTVYDLN---NRDSTGA--AKVIRELL--G--YEGFLSSCRFI---DDTTLLTGSGDMKIVTWNLETGQRIHEVA 1820 (2004)
Q Consensus 1753 S~DGtIrVWDl~---t~~~~~~--~k~i~sl~--g--h~~~Vssvafs---dd~~LlSgS~DGtI~IWDl~tg~~i~~il 1820 (2004)
+.||.|++||++ .+..... ...+..+. . +...+.++.+. ++..+++++.||.|++||+++++.+..+.
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 999999999995 2211100 01111111 1 44556666643 35679999999999999999998876654
Q ss_pred cc-ccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeC----CCCEEEEEECCCeEEEEE
Q psy8748 1821 QA-HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHP----SGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1821 ~~-h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~-~h~s~ItsIafSP----dg~~LaSgS~DGtIrIWD 1894 (2004)
.. |.+.|++++|+|+++++++|+.||.|++||+++++.+..+. .|...|.+++|+| ++.++++|+.||.|++||
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence 32 88999999999999999999999999999999999998886 7888999996665 677999999999999999
Q ss_pred ccCCceeEEEcCCC------------------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc
Q psy8748 1895 IRADQQIATYLPPN------------------------KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG 1950 (2004)
Q Consensus 1895 Lrtgk~i~t~~~~~------------------------~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g 1950 (2004)
+++++....+.... +...|.+++|+ ++++|++|+.||.|++||+.+++....+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence 99998877765321 55668999999 789999999999999999999887777665
Q ss_pred -------------------------------------CCCCeEEEEEcCC--CCEEEEEECCCeEEEEE
Q psy8748 1951 -------------------------------------HENRVTSISLSPN--GMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1951 -------------------------------------Hs~~VtsLaFSPD--g~~LaSgS~DGtIrIWd 1980 (2004)
|.+.|++++|+++ +.+|++|+.||.|++|+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 369 PSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp C--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999988 88999999999999995
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=325.58 Aligned_cols=287 Identities=15% Similarity=0.236 Sum_probs=243.8
Q ss_pred cccccccceeEEEEeCC----CCEEEEEeCCCeEEEEECCCCceEEEeeC-----CCCceEEEEEecC----CCEEEEee
Q psy8748 1687 SLKGHINKVNSVHYSGD----SRHCVSGSLDGKLIIWDTWTGNKTQVIPL-----RSAWVMSVAFAQS----GNFVACGG 1753 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPD----G~~LASGS~DGtIrVWDl~Tgk~l~ti~~-----Ht~~ItsLafSPd----g~~LaSGS 1753 (2004)
...+|.+.|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ ++++++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 45666677778999999998887766653 5678999999999 67999999
Q ss_pred cCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCCCceeEEee--ccccCCeEE
Q psy8748 1754 MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQRIHEVA--QAHIGDVVS 1829 (2004)
Q Consensus 1754 ~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~il--~~h~~~Its 1829 (2004)
.||.|++||+.++ +....+.+|...+.++.|++ +..+++++.||.|++||+++++....+. ..|...|.+
T Consensus 93 ~dg~i~v~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 166 (366)
T 3k26_A 93 SRGIIRIINPITM------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 166 (366)
T ss_dssp TTCEEEEECTTTC------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred CCCEEEEEEchhc------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence 9999999999754 45667788999999999986 4568999999999999999988775542 579999999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeEEEEE----------------------------ecCCCCeEEEEEeCCCCEE
Q psy8748 1830 ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF----------------------------FGHEADVNSVCFHPSGLAF 1881 (2004)
Q Consensus 1830 LafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl----------------------------~~h~s~ItsIafSPdg~~L 1881 (2004)
++|+|+++++++++.||.|++||+++++....+ ..|...|.+++|+ ++++
T Consensus 167 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 244 (366)
T 3k26_A 167 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI 244 (366)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred EEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence 999999999999999999999999876543322 2389999999999 6799
Q ss_pred EEEECCCeEEEEEccCCce--------------eEEEcCCCCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCee-
Q psy8748 1882 ATGSEDKTARLFDIRADQQ--------------IATYLPPNKNSGFTSCAVSSS--GRYIFCGSDDNNVHVWDLLKTTH- 1944 (2004)
Q Consensus 1882 aSgS~DGtIrIWDLrtgk~--------------i~t~~~~~~~s~ItsLafSPd--G~~LaSGSsDGsIrIWDL~tge~- 1944 (2004)
++++.||.|++||++++.. +..+ ..+...+.+++|+|+ |++|++|+.||.|++||+.+++.
T Consensus 245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF--DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE--ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred EEEecCCEEEEEeCCCccccccccccCCcchheeccc--cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 9999999999999987654 4444 345567899999999 99999999999999999998764
Q ss_pred ---eEEEccC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1945 ---NGVLSGH--ENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1945 ---l~tL~gH--s~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
...+.+| ...|++++|+|++++|++|+.||.|++||+.+
T Consensus 323 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 323 KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 3467777 79999999999999999999999999999853
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=324.26 Aligned_cols=285 Identities=14% Similarity=0.191 Sum_probs=249.9
Q ss_pred cccccceeEEEEeCCCC-EEEEEeCCCeEEEEEC----CCCc------eEEEeeC----------CCCceEEEEEecCCC
Q psy8748 1689 KGHINKVNSVHYSGDSR-HCVSGSLDGKLIIWDT----WTGN------KTQVIPL----------RSAWVMSVAFAQSGN 1747 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~-~LASGS~DGtIrVWDl----~Tgk------~l~ti~~----------Ht~~ItsLafSPdg~ 1747 (2004)
..|.+.|++++|+|+++ +|++|+.||.|++||+ .+++ ....+.. |.+.|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 44669999999999999 9999999999999999 8888 4555544 677999999999999
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCC
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD 1826 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ 1826 (2004)
+|++|+.||.|++|+.. ......+.+|...+.++.|.++ ..+++++.||.|++||+.+++....+ ..+...
T Consensus 122 ~l~~~~~dg~i~i~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~ 193 (425)
T 1r5m_A 122 SIVTGVENGELRLWNKT-------GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF-ELKETG 193 (425)
T ss_dssp EEEEEETTSCEEEEETT-------SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE-CCC---
T ss_pred EEEEEeCCCeEEEEeCC-------CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe-eccccC
Confidence 99999999999999932 3566778889999999999865 46889999999999999998877544 344444
Q ss_pred ---------------eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEE
Q psy8748 1827 ---------------VVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTAR 1891 (2004)
Q Consensus 1827 ---------------ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIr 1891 (2004)
+.+++|++++ .+++++.||.|++||+++++.+..+..|...|.+++|+|+++++++++.||.|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 272 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR 272 (425)
T ss_dssp ------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 8899999874 588999999999999999998889999999999999999999999999999999
Q ss_pred EEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEE
Q psy8748 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1892 IWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS 1971 (2004)
+||+++++....+. .+...+.+++|+|++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++
T Consensus 273 i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 273 IWHGGNGNSQNCFY--GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp EECSSSBSCSEEEC--CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCccceEec--CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE
Confidence 99999998888773 466789999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCe
Q psy8748 1972 WDQFVKVWQESNTI 1985 (2004)
Q Consensus 1972 ~DGtIrIWdlstg~ 1985 (2004)
.||.|++|++.++.
T Consensus 350 ~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 350 MDGQVNVYDLKKLN 363 (425)
T ss_dssp TTSCEEEEECHHHH
T ss_pred CCCeEEEEECCCCc
Confidence 99999999998765
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=308.56 Aligned_cols=302 Identities=19% Similarity=0.292 Sum_probs=257.1
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
|.++|.+++|+|||++++++..++.+.+|+............|...|.+++|+|+++++++++ ||.|++|++..+....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 667899999999999999998888887776665555555567999999999999999999999 9999999998754322
Q ss_pred cceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCcee-EEeeccccCCeEEEEECCCCCEEEEEECCCeE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRI-HEVAQAHIGDVVSISLSPDGQYFVTGSVDKSC 1848 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i-~~il~~h~~~ItsLafSPdg~~LaSGS~DGsI 1848 (2004)
.... ....+|...+.++.|++++ .+++++.||.|++||+.+++.. ......|...|.+++|+|+++++++++.||.|
T Consensus 87 ~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQ-LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEE-EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeec-ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 2221 2223688999999999655 5888999999999999987732 23456788899999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEE
Q psy8748 1849 KLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCG 1928 (2004)
Q Consensus 1849 rIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSG 1928 (2004)
++||+++++.+..+..|...|.+++|+|+++++++++.||.|++||+++++....+. +...+.+++|+|+++++++|
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~ 242 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSSEEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec---CCCceEEEEECCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999998887763 45679999999999999999
Q ss_pred eCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeecCCCCcccc
Q psy8748 1929 SDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFC 2002 (2004)
Q Consensus 1929 SsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~~h~~~Vts 2002 (2004)
+.||.|++||+.+++.. .+..|...|.+++|+|++++|++++.||.|++|++.+++..... .|...|.+
T Consensus 243 ~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~----~~~~~v~~ 311 (337)
T 1gxr_A 243 MESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLS 311 (337)
T ss_dssp ETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----ECSSCEEE
T ss_pred cCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe----cCCCcEEE
Confidence 99999999999887754 67789999999999999999999999999999999998754322 24555554
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=310.50 Aligned_cols=310 Identities=16% Similarity=0.200 Sum_probs=240.2
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC----ceEEEeeCCCCceEEEEEec--CCCEEEEeecCCeE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG----NKTQVIPLRSAWVMSVAFAQ--SGNFVACGGMDNMC 1758 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg----k~l~ti~~Ht~~ItsLafSP--dg~~LaSGS~DGtI 1758 (2004)
...+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|+| ++++|++|+.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 4567899999999999999999999999999999999876 46667789999999999999 69999999999999
Q ss_pred EEEEcCCCCCCC---cceEEEEEecCccceeeeEEeC---CCcEEEeecCCeEEEEECCCCceeEEe------------e
Q psy8748 1759 TVYDLNNRDSTG---AAKVIRELLGYEGFLSSCRFID---DTTLLTGSGDMKIVTWNLETGQRIHEV------------A 1820 (2004)
Q Consensus 1759 rVWDl~t~~~~~---~~k~i~sl~gh~~~Vssvafsd---d~~LlSgS~DGtI~IWDl~tg~~i~~i------------l 1820 (2004)
++||++.+.... .......+.+|...+.++.|.+ +..+++++.||.|++||+++++..... .
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 999998754221 2256777888999999999996 456999999999999999887654322 1
Q ss_pred ccccCCeEEEEECCC---CCEEEEEECCCeEEEEECCCCeE--EEEEecCCCCeEEEEEeCCC----CEEEEEECCCeEE
Q psy8748 1821 QAHIGDVVSISLSPD---GQYFVTGSVDKSCKLWDFREKKC--VQTFFGHEADVNSVCFHPSG----LAFATGSEDKTAR 1891 (2004)
Q Consensus 1821 ~~h~~~ItsLafSPd---g~~LaSGS~DGsIrIWDlrs~k~--I~tl~~h~s~ItsIafSPdg----~~LaSgS~DGtIr 1891 (2004)
..+...+.+++|+|+ +..+++++.|+.+.+|+...+.. +..+.+|...|.+++|+|++ ++|++|+.||.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 257788999999997 89999999999998888887765 67778899999999999998 8999999999999
Q ss_pred EEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe----CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEE
Q psy8748 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS----DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMAL 1967 (2004)
Q Consensus 1892 IWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS----sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~L 1967 (2004)
+||++++....... ............+.......+. ..+.+.+|+....+.+..+.+|.+.|++++|+|++++|
T Consensus 244 iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 321 (351)
T 3f3f_A 244 IFKITEKLSPLASE--ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL 321 (351)
T ss_dssp EEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE
T ss_pred EEeCCCCcCccccC--CcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEE
Confidence 99998765544332 2222333344444444444433 34556677777778888999999999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEEeecCC
Q psy8748 1968 VTSSWDQFVKVWQESNTIVWKVLKVYNLE 1996 (2004)
Q Consensus 1968 aSgS~DGtIrIWdlstg~l~k~Ik~~~~h 1996 (2004)
++|+.||.|++|++.++..++.++.+..|
T Consensus 322 ~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 322 SSAGDDGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp EEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred EEecCCCcEEEEecCcCcchhheeehccc
Confidence 99999999999999999889999888765
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=318.19 Aligned_cols=300 Identities=14% Similarity=0.153 Sum_probs=252.6
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
...|++.|++++|+| ++||+ |+.||+|++||+.+ +...
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s-~~~dg~i~iw~~~~-------------~~~~-------------------------- 49 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVS-CSGDGYLKVWDNKL-------------LDNE-------------------------- 49 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEE-EETTSEEEEEESBC-------------CTTC--------------------------
T ss_pred hhhhhcCeEEEEecC--CeEEE-EcCCCEEEEEECCC-------------cccc--------------------------
Confidence 346999999999999 89999 99999999999977 1000
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCC----C--
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGD----S-- 1704 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPD----G-- 1704 (2004)
........+.+|...|++++|+|+ +
T Consensus 50 -------------------------------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 50 -------------------------------------------------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp -------------------------------------------------CGGGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred -------------------------------------------------cCCCcceEEecCCCcEEEEEEecccccCCcc
Confidence 001234556789999999999999 9
Q ss_pred -CEEEEEeCCCeEEEEECCCCce-----EEEeeCC-----CCceEEEEEe----cCCCE-EEEeecCCeEEEEEcCC---
Q psy8748 1705 -RHCVSGSLDGKLIIWDTWTGNK-----TQVIPLR-----SAWVMSVAFA----QSGNF-VACGGMDNMCTVYDLNN--- 1765 (2004)
Q Consensus 1705 -~~LASGS~DGtIrVWDl~Tgk~-----l~ti~~H-----t~~ItsLafS----Pdg~~-LaSGS~DGtIrVWDl~t--- 1765 (2004)
++|++++.||.|++||+.+++. ...+..| ...|.+++|+ |++++ +++++.||.|++||+..
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 9999999999999999999887 8888888 5899999999 99999 99999999999999987
Q ss_pred ---CCCCCcceEEEEE-------ecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeecc---c---cCCeEE
Q psy8748 1766 ---RDSTGAAKVIREL-------LGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA---H---IGDVVS 1829 (2004)
Q Consensus 1766 ---~~~~~~~k~i~sl-------~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~---h---~~~Its 1829 (2004)
..... ......+ ..|...+.++.|.+++.+++++.||.|++||+++++.+..+ .. | ...|.+
T Consensus 161 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 161 ESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNF-ESQHSMINNSNSIRS 238 (397)
T ss_dssp HHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEE-ECCC---CCCCCEEE
T ss_pred ccccceee-ccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEE-eccccccccCCccce
Confidence 33221 1111133 44788899999996668888999999999999998877544 45 7 889999
Q ss_pred EEECCCCCEEEEEECC---CeEEEEECCCCeEEEEEec-------------CCCCeEEEEEeCCCCEEEEEECCCeEEEE
Q psy8748 1830 ISLSPDGQYFVTGSVD---KSCKLWDFREKKCVQTFFG-------------HEADVNSVCFHPSGLAFATGSEDKTARLF 1893 (2004)
Q Consensus 1830 LafSPdg~~LaSGS~D---GsIrIWDlrs~k~I~tl~~-------------h~s~ItsIafSPdg~~LaSgS~DGtIrIW 1893 (2004)
++|+|++++|++++.| |.|++||+++++.+..+.. |...|.+++|+|++++|++++.||.|++|
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 9999999999999999 9999999999999999988 99999999999999999999999999999
Q ss_pred EccCCceeEEEcCC----CC---------------CCCeEEEEEcCCC----------CEEEEEeCCCeEEEEECCCCe
Q psy8748 1894 DIRADQQIATYLPP----NK---------------NSGFTSCAVSSSG----------RYIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1894 DLrtgk~i~t~~~~----~~---------------~s~ItsLafSPdG----------~~LaSGSsDGsIrIWDL~tge 1943 (2004)
|+++++.+..+... .+ ...|.+++|+|+| ++|++|+.||.|++||+.+++
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 99999988888521 33 6889999999998 799999999999999987763
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=350.02 Aligned_cols=293 Identities=23% Similarity=0.369 Sum_probs=246.1
Q ss_pred CCCCCCeEEEEEccCC-CEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1552 EPCKEQRNAVSFHACS-TLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdG-k~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..|.+.|++++|+|++ ++|+| |+.||+|++|++.. .. ..
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s-~s~D~~i~~W~~~~--------------------~~----------~~--------- 418 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVS-ASRDKSIILWKLTK--------------------DD----------KA--------- 418 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEE-EETTSEEEEEECCC--------------------ST----------TC---------
T ss_pred ccCCceeEEEEecCCCCCEEEE-EeCCCcEEEEEccC--------------------CC----------cc---------
Confidence 4599999999999975 79999 99999999999876 00 00
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
.......+.+|.+.|++++|+|++++|++|
T Consensus 419 --------------------------------------------------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sg 448 (694)
T 3dm0_A 419 --------------------------------------------------YGVAQRRLTGHSHFVEDVVLSSDGQFALSG 448 (694)
T ss_dssp --------------------------------------------------SCEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred --------------------------------------------------cccccceecCCCCcEEEEEECCCCCEEEEE
Confidence 001234577899999999999999999999
Q ss_pred eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE
Q psy8748 1711 SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf 1790 (2004)
+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.||.|++||..... .........+|...+.++.|
T Consensus 449 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~---~~~~~~~~~~h~~~v~~~~~ 525 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC---KYTISEGGEGHRDWVSCVRF 525 (694)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE---EEEECSSTTSCSSCEEEEEE
T ss_pred eCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc---ceeeccCCCCCCCcEEEEEE
Confidence 999999999999999999999999999999999999999999999999999975321 11111122468888999999
Q ss_pred eCCC---cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC
Q psy8748 1791 IDDT---TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA 1867 (2004)
Q Consensus 1791 sdd~---~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s 1867 (2004)
+++. .+++++.||.|++||+++++.. ..+.+|.+.|++++|+|++++|++|+.||.|++||+++++.+..+. +..
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~-~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~ 603 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLR-STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANS 603 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSS
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcEE-EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCC
Confidence 8754 5999999999999999988776 4457899999999999999999999999999999999999887774 456
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCC-----------------CCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1868 DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN-----------------KNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1868 ~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~-----------------~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
.|.+++|+|++.++++++ ++.|++||++++..+..+.... +...+++++|+|+|++|++|+.
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~ 682 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence 899999999998887776 6679999999988877664221 1123788999999999999999
Q ss_pred CCeEEEEECC
Q psy8748 1931 DNNVHVWDLL 1940 (2004)
Q Consensus 1931 DGsIrIWDL~ 1940 (2004)
||+|++||+.
T Consensus 683 Dg~i~iW~i~ 692 (694)
T 3dm0_A 683 DGVIRVWGIG 692 (694)
T ss_dssp TSEEEEEEC-
T ss_pred CCeEEEEecc
Confidence 9999999985
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=321.58 Aligned_cols=301 Identities=18% Similarity=0.340 Sum_probs=261.1
Q ss_pred ccccccccccce-eEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1684 PKKSLKGHINKV-NSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1684 pi~sL~GHt~~V-tsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
....+.+|.+.| .++.+ +++++++|+.||+|++||+.+++.+..+.+|.+.|.+++|++++ .+++|+.||.|++||
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 355789999885 66665 56799999999999999999999999999999999999999888 999999999999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEe---CCCcEEEeecCCeEEEEECCCCcee----------------------E
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFI---DDTTLLTGSGDMKIVTWNLETGQRI----------------------H 1817 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafs---dd~~LlSgS~DGtI~IWDl~tg~~i----------------------~ 1817 (2004)
++++ .....+.+|...+.++.+. ++..+++|+.||.|++||+.++... .
T Consensus 190 ~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 190 IKKG------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp TTTT------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred CCCC------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 9754 5667788899999999997 3467999999999999999877643 2
Q ss_pred EeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC
Q psy8748 1818 EVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1818 ~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt 1897 (2004)
....+|...+.++ +++++++++|+.||.|++||+++++.+..+.+|...|.+++|+|+++++++|+.||.|++||+++
T Consensus 264 ~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp EEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred EEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 3456788888877 56789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q psy8748 1898 DQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVK 1977 (2004)
Q Consensus 1898 gk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIr 1977 (2004)
++.+..+. .|...+.+++|+ ++++++|+.||.|++||+.++....... |...+..++|++++.++++|+ ||.|+
T Consensus 342 ~~~~~~~~--~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~ 415 (464)
T 3v7d_B 342 GELMYTLQ--GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFN 415 (464)
T ss_dssp TEEEEEEC--CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEE
T ss_pred CcEEEEEe--CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEE
Confidence 99988884 566889999997 6899999999999999999887766654 677888899999999999999 99999
Q ss_pred EEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1978 VWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1978 IWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
+||+.+++.... ....|.+.|+++
T Consensus 416 iwd~~~g~~~~~--~~~~~~~~v~~v 439 (464)
T 3v7d_B 416 IYNLRSGKLVHA--NILKDADQIWSV 439 (464)
T ss_dssp EEETTTCCEEES--CTTTTCSEEEEE
T ss_pred EEECCCCcEEeh--hhccCCCcEEEE
Confidence 999999865332 244566666654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=300.62 Aligned_cols=279 Identities=21% Similarity=0.404 Sum_probs=242.2
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee--CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP--LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~--~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
..++|+||+++ +||+| .|++|+|||+.+|+.+..+. .|...|.+++|+|+++++++|+.||.|++|+++++
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~----- 99 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----- 99 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT-----
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc-----
Confidence 35789999886 67766 58999999999999888765 57788999999999999999999999999999754
Q ss_pred ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIW 1851 (2004)
+......+|...+.++.+. +..+++++.++.+++|+...+........+|...+.++.++++++++++++.||.|++|
T Consensus 100 -~~~~~~~~h~~~~~~~~~~-~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 100 -KRLRNMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177 (318)
T ss_dssp -EEEEEEECCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -eeEEEecCccceEEEeecC-CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence 5677788888888776654 46789999999999999998877767778999999999999999999999999999999
Q ss_pred ECCCCe----EEEEEecCCCCeEEEEEeCCCCEE---EEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1852 DFREKK----CVQTFFGHEADVNSVCFHPSGLAF---ATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1852 Dlrs~k----~I~tl~~h~s~ItsIafSPdg~~L---aSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
|+++++ .......+...|.+++++|++..+ ++++.++.|++||.......... .+...+..+.|+++++.
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---DAHSQVCSILWSPHYKE 254 (318)
T ss_dssp ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE---ECSSCEEEEEEETTTTE
T ss_pred ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc---cceeeeeeeeecccccc
Confidence 998764 234556788899999999976533 45667899999999988877665 34467899999999998
Q ss_pred EEEEe--CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1925 IFCGS--DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1925 LaSGS--sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
+++++ .||.|++||+.+++++..+.+|.+.|++++|+|+|++|+|||.||+|+|||+.+.
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 88765 7999999999999999999999999999999999999999999999999999764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=320.36 Aligned_cols=280 Identities=21% Similarity=0.392 Sum_probs=246.6
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee--CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP--LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~--~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
.++.|+||++ +.||+|. |++|+|||..+|+....+. .|...|++++|+|+|++|++|+.||.|++||+.++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~----- 179 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----- 179 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-----
Confidence 4788999975 4777765 8999999999999887665 57788999999999999999999999999999754
Q ss_pred ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIW 1851 (2004)
+......+|...+.++.+. +..+++|+.|+.+++||..........+.+|...+..+.++|+++++++++.||.+++|
T Consensus 180 -~~~~~~~~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~ 257 (420)
T 4gga_A 180 -KRLRNMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257 (420)
T ss_dssp -EEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -cEEEEEeCCCCceEEEeeC-CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence 5677888999999998875 56899999999999999998777667778999999999999999999999999999999
Q ss_pred ECCCCe----EEEEEecCCCCeEEEEEeCCCC-EEEEE--ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1852 DFREKK----CVQTFFGHEADVNSVCFHPSGL-AFATG--SEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1852 Dlrs~k----~I~tl~~h~s~ItsIafSPdg~-~LaSg--S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
|...++ .+.....|...|.+++|+|++. .++++ +.||+|++||+.+++....+.. ...+.++.|+++++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKE 334 (420)
T ss_dssp ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC---SSCEEEEEEETTTTE
T ss_pred eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc---ccceeeeeecCCCCe
Confidence 998764 3566778999999999999654 55543 4799999999999998888743 356899999999999
Q ss_pred EEEEe--CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q psy8748 1925 IFCGS--DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1925 LaSGS--sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
+++++ .||.|++||+.+++++..+.+|.+.|++++|+|||.+|+||+.||+|++||+.+..
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 98765 68999999999999999999999999999999999999999999999999997654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-31 Score=310.03 Aligned_cols=292 Identities=17% Similarity=0.158 Sum_probs=244.3
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
|.++|++++|+|+|++||+ |+.||.|++||..+ +.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~-~~~d~~v~i~~~~~-------------~~------------------------------- 41 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAI-CPNNHEVHIYEKSG-------------NK------------------------------- 41 (372)
T ss_dssp CSSCCCEEEECTTSSEEEE-ECSSSEEEEEEEET-------------TE-------------------------------
T ss_pred cCCCeEEEEECCCCCEEEE-EeCCCEEEEEeCCC-------------Cc-------------------------------
Confidence 7788999999999999999 99999999999877 11
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCC
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLD 1713 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~D 1713 (2004)
+.....+.+|.+.|++++|+|++++|++++.|
T Consensus 42 ------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 42 ------------------------------------------------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp ------------------------------------------------EEEEEEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred ------------------------------------------------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCC
Confidence 00133456799999999999999999999999
Q ss_pred CeEEEEECCCCceEEEe--eCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEE-EEEecCccceeeeEE
Q psy8748 1714 GKLIIWDTWTGNKTQVI--PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI-RELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti--~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i-~sl~gh~~~Vssvaf 1790 (2004)
|.|++||+.+++..... ..|...|.+++|+|+++++++|+.||.|++|+++... ..... ....+|...+.++.|
T Consensus 74 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 74 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN---DWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT---TEEEEEEECTTCCSCEEEEEE
T ss_pred CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC---cceeeeeeecccCCCeeEEEE
Confidence 99999999888755443 6689999999999999999999999999999998653 11222 233567889999999
Q ss_pred eCC-CcEEEeecCCeEEEEECC------------------CCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy8748 1791 IDD-TTLLTGSGDMKIVTWNLE------------------TGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1791 sdd-~~LlSgS~DGtI~IWDl~------------------tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIW 1851 (2004)
.++ ..+++++.||.|++||+. .++.. ..+..|...|.+++|+|+++++++++.||.|++|
T Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 229 (372)
T 1k8k_C 151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM-FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 229 (372)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE-EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhhe-EecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 965 468899999999999964 44554 4445888999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC--CceeE---------------------------
Q psy8748 1852 DFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA--DQQIA--------------------------- 1902 (2004)
Q Consensus 1852 Dlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt--gk~i~--------------------------- 1902 (2004)
|+++++.+..+..|...|.+++|+|++.++++| .||.|++||+.+ ++...
T Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 230 DADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp EGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred ECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 999999999999999999999999999888877 899999999987 42100
Q ss_pred ----------EEcCCCCCCCeEEEEEc-CCC---CEEEEEeCCCeEEEEECCCCe
Q psy8748 1903 ----------TYLPPNKNSGFTSCAVS-SSG---RYIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1903 ----------t~~~~~~~s~ItsLafS-PdG---~~LaSGSsDGsIrIWDL~tge 1943 (2004)
......|...|++++|. ++| ++|++|+.||.|++||+.+++
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 11113677899999966 676 999999999999999986643
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-31 Score=312.65 Aligned_cols=297 Identities=20% Similarity=0.304 Sum_probs=243.0
Q ss_pred ccccccccccceeEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEee-------------CCCCceEEEEEec-CCCE
Q psy8748 1684 PKKSLKGHINKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWTGNKTQVIP-------------LRSAWVMSVAFAQ-SGNF 1748 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~Tgk~l~ti~-------------~Ht~~ItsLafSP-dg~~ 1748 (2004)
....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++.....+. +|...|.+++|+| ++++
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3556788999999999999 99999999999999999999886654443 5899999999999 7789
Q ss_pred EEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC----CcEEEeecCCeEEEEECCCCceeEEeecccc
Q psy8748 1749 VACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD----TTLLTGSGDMKIVTWNLETGQRIHEVAQAHI 1824 (2004)
Q Consensus 1749 LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd----~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~ 1824 (2004)
+++++.||.|++||+.++ .....+ .+...+.++.+.+. ..+++++.+|.|++||+.+++... .+..|.
T Consensus 115 l~s~~~d~~i~iwd~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~~ 186 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTL------QTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH-ILQGHR 186 (408)
T ss_dssp EEEEETTSEEEEEETTTT------EEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE-EECCCC
T ss_pred EEEEeCCCeEEEeeCCCC------ccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee-eecCCC
Confidence 999999999999999764 233333 35667778887742 369999999999999999988774 446799
Q ss_pred CCeEEEEECCCCC-EEEEEECCCeEEEEECCCCe-EEEEE---------------ecCCCCeEEEEEeCCCCEEEEEECC
Q psy8748 1825 GDVVSISLSPDGQ-YFVTGSVDKSCKLWDFREKK-CVQTF---------------FGHEADVNSVCFHPSGLAFATGSED 1887 (2004)
Q Consensus 1825 ~~ItsLafSPdg~-~LaSGS~DGsIrIWDlrs~k-~I~tl---------------~~h~s~ItsIafSPdg~~LaSgS~D 1887 (2004)
+.|.+++|+|+++ .+++|+.||.|++||++.+. .+..+ ..|...|.+++|+|+++++++++.|
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 266 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD 266 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence 9999999999998 58999999999999998765 33443 4688899999999999999999999
Q ss_pred CeEEEEEccCCceeEEEcCCCC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCC
Q psy8748 1888 KTARLFDIRADQQIATYLPPNK---NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNG 1964 (2004)
Q Consensus 1888 GtIrIWDLrtgk~i~t~~~~~~---~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg 1964 (2004)
|.|++||+++++.......... ...+........+..+++++.+|.|++||+.+++.+..+.+|.+.|++++|+|++
T Consensus 267 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 346 (408)
T 4a11_B 267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF 346 (408)
T ss_dssp SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT
T ss_pred CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC
Confidence 9999999998876544322111 1122222333445667777889999999999999999999999999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEE
Q psy8748 1965 MALVTSSWDQFVKVWQESNTIVWK 1988 (2004)
Q Consensus 1965 ~~LaSgS~DGtIrIWdlstg~l~k 1988 (2004)
++|++|+.||.|++|++.+++...
T Consensus 347 ~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 347 QELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TEEEEEETTSCEEEEEECC-----
T ss_pred CEEEEECCCCeEEEEeCCCCCccC
Confidence 999999999999999999876543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=312.14 Aligned_cols=246 Identities=16% Similarity=0.208 Sum_probs=205.1
Q ss_pred ccccceeEEEEeCC---CCEEEEEeCCCeEEEEECCCCc-eEEEeeCCCCceEEEEE------ecCCCEEEEeecCCeEE
Q psy8748 1690 GHINKVNSVHYSGD---SRHCVSGSLDGKLIIWDTWTGN-KTQVIPLRSAWVMSVAF------AQSGNFVACGGMDNMCT 1759 (2004)
Q Consensus 1690 GHt~~VtsLaFSPD---G~~LASGS~DGtIrVWDl~Tgk-~l~ti~~Ht~~ItsLaf------SPdg~~LaSGS~DGtIr 1759 (2004)
+|.+.|++++|+|+ +++|++|+.||.|++||+.+++ ....+.+|...|.+++| +|+++++++|+.||.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 58899999999998 6999999999999999999988 88899999999999965 67899999999999999
Q ss_pred EEEcCCCCCCCcceEEEEEecCc----cceeeeEE----e-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEE
Q psy8748 1760 VYDLNNRDSTGAAKVIRELLGYE----GFLSSCRF----I-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSI 1830 (2004)
Q Consensus 1760 VWDl~t~~~~~~~k~i~sl~gh~----~~Vssvaf----s-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsL 1830 (2004)
+||+..+. .....+..+. ..+.++.| + ++..+++++.||.|++||+++++.... ..|...|.++
T Consensus 143 vwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~v~~~ 215 (357)
T 3i2n_A 143 VWDPRQKD-----DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TNIKNGVCSL 215 (357)
T ss_dssp EECTTSCS-----SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEE
T ss_pred EEeCCCCC-----CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--cCCCCceEEE
Confidence 99998653 1223333333 36777774 3 556788999999999999999887533 4788899999
Q ss_pred EECC---CCCEEEEEECCCeEEEEECCCCeEEEEE-----ecCCCCeEEEEEeCCCC-EEEEEECCCeEEEEEccCCc--
Q psy8748 1831 SLSP---DGQYFVTGSVDKSCKLWDFREKKCVQTF-----FGHEADVNSVCFHPSGL-AFATGSEDKTARLFDIRADQ-- 1899 (2004)
Q Consensus 1831 afSP---dg~~LaSGS~DGsIrIWDlrs~k~I~tl-----~~h~s~ItsIafSPdg~-~LaSgS~DGtIrIWDLrtgk-- 1899 (2004)
+|+| +++++++|+.||.|++||+++++....+ .+|...|.+++|+|++. ++++++.||.|++||++++.
T Consensus 216 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 216 EFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred EcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 9999 9999999999999999999876654433 48999999999999998 89999999999999998653
Q ss_pred -----------------eeEEEcCCCCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCee
Q psy8748 1900 -----------------QIATYLPPNKNSGFTSCAVSSSGRYIF-CGSDDNNVHVWDLLKTTH 1944 (2004)
Q Consensus 1900 -----------------~i~t~~~~~~~s~ItsLafSPdG~~La-SGSsDGsIrIWDL~tge~ 1944 (2004)
.+..+ ..|...|++++|+|+|++++ +|+.||.|++||+.+.+.
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 296 SKKDSEGIEMGVAGSVSLLQNV--TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp --CCTTSCCCCCCCEEEEEEEE--ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccccCCCCccccccccceeecc--ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 23333 45668899999999999998 799999999999987653
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-32 Score=332.39 Aligned_cols=296 Identities=16% Similarity=0.259 Sum_probs=235.5
Q ss_pred ccccccccccceeEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEE--EeeCCCCceEEEEEec-CCCEEEEeecCCeEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWTGNKTQ--VIPLRSAWVMSVAFAQ-SGNFVACGGMDNMCT 1759 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~Tgk~l~--ti~~Ht~~ItsLafSP-dg~~LaSGS~DGtIr 1759 (2004)
......+|...|+|++|+| ++++||+|+.||.|+|||+.+++... .+.+|.+.|++++|+| ++++|++|+.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 3456678999999999999 56799999999999999998876544 4568999999999998 689999999999999
Q ss_pred EEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC-
Q psy8748 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ- 1837 (2004)
Q Consensus 1760 VWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~- 1837 (2004)
+||++.. ..........+...+.++.|+++ ..+++|+.||.|++||++... + ..+.+|...|.+++|+|++.
T Consensus 191 iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~-~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 191 LQDFKGN----ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-L-WNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp EEETTSC----EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-C-CCSBCCSSCEEEEEECTTCSS
T ss_pred EeeccCC----ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-e-EEEecccceEEeeeecCCCce
Confidence 9999653 12222222334456778888855 568889999999999997543 3 33568999999999999876
Q ss_pred EEEEEECCCeEEEEECCCCeEEE---EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCC----
Q psy8748 1838 YFVTGSVDKSCKLWDFREKKCVQ---TFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN---- 1910 (2004)
Q Consensus 1838 ~LaSGS~DGsIrIWDlrs~k~I~---tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~---- 1910 (2004)
++++|+.||.|++||+++.+... ...+|...|++++|+|+|++|++++.||.|++||+.++.....+..+.+.
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 344 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 344 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS
T ss_pred EEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccc
Confidence 78899999999999998765433 33578999999999999999999999999999999999887776443321
Q ss_pred CCeEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeeEEEc-cCCCCeEEE-EEcCCCCEEEEEECCCeE
Q psy8748 1911 SGFTSCAVSSSGRYIFCGS------------DDNNVHVWDLLKTTHNGVLS-GHENRVTSI-SLSPNGMALVTSSWDQFV 1976 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGS------------sDGsIrIWDL~tge~l~tL~-gHs~~VtsL-aFSPDg~~LaSgS~DGtI 1976 (2004)
..+..+.|+|++.+++++. .++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |+.|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i 423 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHI 423 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEE
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcE
Confidence 1234567788777777764 23579999999999988874 688889887 6999999999876 8899
Q ss_pred EEEECCCCeE
Q psy8748 1977 KVWQESNTIV 1986 (2004)
Q Consensus 1977 rIWdlstg~l 1986 (2004)
+||++++++.
T Consensus 424 ~iW~~~~gk~ 433 (435)
T 4e54_B 424 LIWSQQEART 433 (435)
T ss_dssp EECCCC----
T ss_pred EEEECCcCee
Confidence 9999998854
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=349.27 Aligned_cols=287 Identities=11% Similarity=0.099 Sum_probs=222.3
Q ss_pred cccccccceeEEEEeCC------CCEEEEEeCCCeEEEEECCCCce-----------EEEeeCCCCceEEEEEecCCCEE
Q psy8748 1687 SLKGHINKVNSVHYSGD------SRHCVSGSLDGKLIIWDTWTGNK-----------TQVIPLRSAWVMSVAFAQSGNFV 1749 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPD------G~~LASGS~DGtIrVWDl~Tgk~-----------l~ti~~Ht~~ItsLafSPdg~~L 1749 (2004)
.+.+|.+.|++++|+|+ +.+||+|+.||+|++||+.++.. ...+.+|...|.+++|+++ ..|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence 35568899999999996 57999999999999999987642 2467889999999999986 489
Q ss_pred EEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeee--EEeCC--CcEEEeecCCeEEEEECCCCceeEEeecccc-
Q psy8748 1750 ACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSC--RFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQAHI- 1824 (2004)
Q Consensus 1750 aSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssv--afsdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~- 1824 (2004)
++|+.||+|++||++++. .....+.+|...|.++ .|.++ ..+++|+.||+|++||+++++..... .+|.
T Consensus 281 asgs~DgtV~lWD~~~~~-----~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~-~~~~~ 354 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPE-----VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT-VSRFR 354 (524)
T ss_dssp EEEETTSEEEEEETTBCS-----SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE-EEECS
T ss_pred EEEeCCCEEEEEECCCCC-----CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc-ccccc
Confidence 999999999999997542 2234567899999999 45654 46899999999999999987765433 3443
Q ss_pred -CCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEE
Q psy8748 1825 -GDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIAT 1903 (2004)
Q Consensus 1825 -~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t 1903 (2004)
..|.+++|+|+++.+++++.|++|++||++++.++..+.+|...|++++|+|+|++|++|+.||+|++||.... ....
T Consensus 355 ~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~ 433 (524)
T 2j04_B 355 GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHG 433 (524)
T ss_dssp CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTC
T ss_pred cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccc
Confidence 35889999999999999999999999999999888888899999999999999999999999999999998643 2111
Q ss_pred EcC---CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEccCCCCeEEEEEcCCCC---EEEEEECCCeE
Q psy8748 1904 YLP---PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL-KTTHNGVLSGHENRVTSISLSPNGM---ALVTSSWDQFV 1976 (2004)
Q Consensus 1904 ~~~---~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~-tge~l~tL~gHs~~VtsLaFSPDg~---~LaSgS~DGtI 1976 (2004)
... ......+..++|+|+|+.+. ...+ +.+|+.. ++.....+.+|...|.+++|+|++. .+++|+.||.|
T Consensus 434 ~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~v 510 (524)
T 2j04_B 434 IKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLL 510 (524)
T ss_dssp C------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEE
T ss_pred cccCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceE
Confidence 100 01112467899999998553 2222 3344332 5677888999999999999999954 99999999999
Q ss_pred EEEECCCC
Q psy8748 1977 KVWQESNT 1984 (2004)
Q Consensus 1977 rIWdlstg 1984 (2004)
+||++...
T Consensus 511 rlw~l~~~ 518 (524)
T 2j04_B 511 TLEYLSLE 518 (524)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 99999875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-30 Score=298.11 Aligned_cols=285 Identities=21% Similarity=0.260 Sum_probs=244.6
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
...|++.|++++| |+|++||+ |+.||+|++||+.+ +..
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s-~~~dg~v~vw~~~~-------------~~~--------------------------- 51 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVAS-VSRDGTVRLWSKDD-------------QWL--------------------------- 51 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEE-EETTSEEEEEEESS-------------SEE---------------------------
T ss_pred hhCCCCCcEEEEe-cCCCEEEE-EEcCCcEEEEECCC-------------CEE---------------------------
Confidence 3468999999999 99999999 99999999999866 111
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
...+.+|.+.|++++|+|+++++++|
T Consensus 52 ------------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~ 77 (313)
T 3odt_A 52 ------------------------------------------------------GTVVYTGQGFLNSVCYDSEKELLLFG 77 (313)
T ss_dssp ------------------------------------------------------EEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred ------------------------------------------------------EEEeecCCccEEEEEECCCCCEEEEe
Confidence 12344588899999999999999999
Q ss_pred eCCCeEEEEECCCC---ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceee
Q psy8748 1711 SLDGKLIIWDTWTG---NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tg---k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vss 1787 (2004)
+.||.|++|++.+. +....+..|...|.++.| +++++++++.||.|++||. ......+..|...+.+
T Consensus 78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--------~~~~~~~~~~~~~v~~ 147 (313)
T 3odt_A 78 GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--------GSLVYNLQAHNASVWD 147 (313)
T ss_dssp ETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--------TEEEEEEECCSSCEEE
T ss_pred cCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--------CcEEEecccCCCceeE
Confidence 99999999998764 567778899999999999 5889999999999999992 2556677889999999
Q ss_pred eEEeC--CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecC
Q psy8748 1788 CRFID--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH 1865 (2004)
Q Consensus 1788 vafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h 1865 (2004)
+.+.+ ++.+++++.||.|++|| .++........|...+.+++|+|++. +++++.||.|++||+++++.+..+.+|
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 98874 67799999999999999 34444444444899999999999988 999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1866 EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
...|.+++|+|++ .+++++.||.|++||+++++....+. .+...+.+++|+|+|+ +++|+.||.|++||+.+++..
T Consensus 225 ~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 225 ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT--LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE--CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe--ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 9999999999999 68899999999999999999888884 4456899999999998 567899999999999887665
Q ss_pred EEE
Q psy8748 1946 GVL 1948 (2004)
Q Consensus 1946 ~tL 1948 (2004)
...
T Consensus 301 ~~~ 303 (313)
T 3odt_A 301 SED 303 (313)
T ss_dssp C--
T ss_pred ehh
Confidence 443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-32 Score=324.58 Aligned_cols=291 Identities=16% Similarity=0.303 Sum_probs=252.7
Q ss_pred cccceeEEEEeCCCC-EEEEE----------eCCCeEEEEECCCCc---eEEEeeCCCCceEEEEEecCCCEEEEeecCC
Q psy8748 1691 HINKVNSVHYSGDSR-HCVSG----------SLDGKLIIWDTWTGN---KTQVIPLRSAWVMSVAFAQSGNFVACGGMDN 1756 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~-~LASG----------S~DGtIrVWDl~Tgk---~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG 1756 (2004)
+...|.+++|+|+++ ++++| +.||.|++||+.++. ....+ .|...|.+++|+|++++|++|+.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 456899999999987 99999 889999999998875 33333 5888999999999999999999999
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCCCc------eeEE--eeccccCC
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQ------RIHE--VAQAHIGD 1826 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~------~i~~--il~~h~~~ 1826 (2004)
.|++|++..... .......+.+|...+.++.|++ +..+++++.||.|++||+.+++ .... ....|...
T Consensus 90 ~v~vw~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 90 SLELYSTNEANN--AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp CEEEECCSSTTS--CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred eEEEeecccccc--cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 999999976321 1236677888999999999996 4679999999999999999876 3222 23578899
Q ss_pred eEEEEECCC-CCEEEEEECCCeEEEEECCCCeEEEEEecC------CCCeEEEEEeCCC-CEEEEEECCC---eEEEEEc
Q psy8748 1827 VVSISLSPD-GQYFVTGSVDKSCKLWDFREKKCVQTFFGH------EADVNSVCFHPSG-LAFATGSEDK---TARLFDI 1895 (2004)
Q Consensus 1827 ItsLafSPd-g~~LaSGS~DGsIrIWDlrs~k~I~tl~~h------~s~ItsIafSPdg-~~LaSgS~DG---tIrIWDL 1895 (2004)
|.+++|+|+ +.++++++.||.|++||+++++.+..+..+ ...|.+++|+|++ .++++++.|| .|++||+
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 999999998 789999999999999999999998888776 7899999999997 6899999998 9999999
Q ss_pred cCCc-eeEEEcCCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCC-CEEEEEEC
Q psy8748 1896 RADQ-QIATYLPPNKNSGFTSCAVSS-SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNG-MALVTSSW 1972 (2004)
Q Consensus 1896 rtgk-~i~t~~~~~~~s~ItsLafSP-dG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg-~~LaSgS~ 1972 (2004)
+++. ....+. ..+...+.+++|+| ++++|++|+.||.|++||+.+++.+..+.+|...|++++|+|++ .+|++++.
T Consensus 248 ~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~ 326 (416)
T 2pm9_A 248 RNANTPLQTLN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF 326 (416)
T ss_dssp TSTTSCSBCCC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred CCCCCCcEEee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence 9874 333331 15678899999999 99999999999999999999999999999999999999999999 89999999
Q ss_pred CCeEEEEECCCCe
Q psy8748 1973 DQFVKVWQESNTI 1985 (2004)
Q Consensus 1973 DGtIrIWdlstg~ 1985 (2004)
||.|++|++.++.
T Consensus 327 d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 327 DNKIEVQTLQNLT 339 (416)
T ss_dssp SSEEEEEESCCCC
T ss_pred CCcEEEEEccCCC
Confidence 9999999998764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-31 Score=314.60 Aligned_cols=284 Identities=16% Similarity=0.207 Sum_probs=235.6
Q ss_pred CCCCCCeEEEEEccCC-CEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1552 EPCKEQRNAVSFHACS-TLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdG-k~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
.+|...|++++|+|+| ++||+ |+.||+|++||+.+ +...
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~-------------~~~~-------------------------- 109 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAV-GSKGGDIILWDYDV-------------QNKT-------------------------- 109 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEE-EEBTSCEEEEETTS-------------TTCE--------------------------
T ss_pred cCCCCCEEEEEECCCCCCEEEE-EcCCCeEEEEeCCC-------------cccc--------------------------
Confidence 4688899999999999 99999 99999999999977 1100
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC-CCCEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG-DSRHCVS 1709 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP-DG~~LAS 1709 (2004)
....+.+|.+.|++++|+| ++++|++
T Consensus 110 -----------------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 110 -----------------------------------------------------SFIQGMGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp -----------------------------------------------------EEECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred -----------------------------------------------------eeeecCCcCCceeEEEeCCCCCCEEEE
Confidence 0112246999999999999 7899999
Q ss_pred EeCCCeEEEEECCCCceEEEeeCC---CCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcccee
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPLR---SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~H---t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vs 1786 (2004)
++.||.|++||+.+ .....+..+ ...|.+++|+|+++++++|+.||.|++||++ ......+.+|...+.
T Consensus 137 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-------~~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 137 SSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-------GHEIFKEKLHKAKVT 208 (383)
T ss_dssp EETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-------SCEEEEEECSSSCEE
T ss_pred EeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-------CCEEEEeccCCCcEE
Confidence 99999999999985 555555444 4889999999999999999999999999984 245677888999999
Q ss_pred eeEEeCCC--cEEEeecCCeEEEEECCC----CceeEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeEE
Q psy8748 1787 SCRFIDDT--TLLTGSGDMKIVTWNLET----GQRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCV 1859 (2004)
Q Consensus 1787 svafsdd~--~LlSgS~DGtI~IWDl~t----g~~i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~I 1859 (2004)
++.|++++ .+++++.||.|++||+++ +...... +|...|.+++|+| ++++|++++.||.|++||+++++..
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~ 286 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP 286 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 99999765 588999999999999987 4444333 6899999999999 9999999999999999999987766
Q ss_pred EEEecCC-----------------CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1860 QTFFGHE-----------------ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1860 ~tl~~h~-----------------s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
..+.+|. ..+..++|+|++++ +|+.||.|++||+.+++.+..+....+...+.+++|+|+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g 364 (383)
T 3ei3_B 287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG 364 (383)
T ss_dssp SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS
T ss_pred cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc
Confidence 6655442 23344556666655 6678999999999999999888765566778888999999
Q ss_pred CEEEEEeCCCeEEEEECCC
Q psy8748 1923 RYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~t 1941 (2004)
++|++|+ ||.|++||+.+
T Consensus 365 ~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 365 DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SEEEEEE-TTEEEEEECC-
T ss_pred cEEEEec-CCcEEEEecCC
Confidence 9999997 99999999864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-30 Score=314.82 Aligned_cols=298 Identities=26% Similarity=0.432 Sum_probs=261.5
Q ss_pred ccccccccccce-eEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1684 PKKSLKGHINKV-NSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1684 pi~sL~GHt~~V-tsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
....+.+|.+.| .+ ++++|+++++|+.||.|++||+.+++....+.+|.+.|.+++|+ ++.+++|+.||.|++||
T Consensus 110 ~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 110 SPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred eeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 456789999976 55 44568999999999999999999999999999999999999998 77999999999999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
+.++ +....+.+|...+.++.+. ++.+++|+.||.|++||+.+++.... ..+|...|.+++| +++++++|
T Consensus 186 ~~~~------~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 186 AETG------ECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHV-LMGHVAAVRCVQY--DGRRVVSG 255 (445)
T ss_dssp TTTT------EEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEEEE-EECCSSCEEEEEE--CSSCEEEE
T ss_pred CCcC------cEEEEECCCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCCcEEEE-EcCCcccEEEEEE--CCCEEEEE
Confidence 9754 5667788999999999995 56799999999999999999887744 4689999999999 68899999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
+.||.|++||+++++.+..+.+|...|.+++| ++.++++|+.||.|++||+++++....+. .+...+.++.+ ++
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~--~~ 329 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT--GHQSLTSGMEL--KD 329 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC--CCCSCEEEEEE--ET
T ss_pred cCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc--CCcccEEEEEE--eC
Confidence 99999999999999999999999999999999 78899999999999999999999988874 45567777766 57
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEcc---CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEee--cCCC
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLSG---HENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVY--NLEK 1997 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge~l~tL~g---Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~--~~h~ 1997 (2004)
+++++|+.||.|++||+.+++.+..+.+ |...|++++|+ +.+|++|+.||.|++||+.+++....+... ..|.
T Consensus 330 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 407 (445)
T 2ovr_B 330 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 407 (445)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCC
Confidence 8999999999999999999999999986 88899999995 679999999999999999999876666433 2455
Q ss_pred Cccccc
Q psy8748 1998 KTIFCV 2003 (2004)
Q Consensus 1998 ~~VtsV 2003 (2004)
+.|+++
T Consensus 408 ~~v~~~ 413 (445)
T 2ovr_B 408 GVVWRI 413 (445)
T ss_dssp CEEEEE
T ss_pred ceEEEE
Confidence 566554
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-31 Score=310.46 Aligned_cols=242 Identities=12% Similarity=0.173 Sum_probs=211.5
Q ss_pred cccceeEEEEeCC----CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEec-CCCEEEEeecCCeEEEEEcCC
Q psy8748 1691 HINKVNSVHYSGD----SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQ-SGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1691 Ht~~VtsLaFSPD----G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSP-dg~~LaSGS~DGtIrVWDl~t 1765 (2004)
|.+.|++++|+|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| +++++++|+.||.|++||+.+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 7789999999998 67999999999999999999999999999999999999999 899999999999999999975
Q ss_pred CCCCCcceEEEEE---ecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEE-----------------------
Q psy8748 1766 RDSTGAAKVIREL---LGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHE----------------------- 1818 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl---~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~----------------------- 1818 (2004)
+ .....+ .+|...+.++.|+++ ..+++++.||.|++||+++++....
T Consensus 148 ~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T 3k26_A 148 D------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF 221 (366)
T ss_dssp T------EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred C------eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence 4 344555 678999999999865 5688999999999999987754321
Q ss_pred ----eeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCe--------------EEEEEecCCCCeEEEEEeCC--C
Q psy8748 1819 ----VAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKK--------------CVQTFFGHEADVNSVCFHPS--G 1878 (2004)
Q Consensus 1819 ----il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k--------------~I~tl~~h~s~ItsIafSPd--g 1878 (2004)
....|...|.+++|+ ++++++++.||.|++||++++. .+..+..|...|.+++|+|+ +
T Consensus 222 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 299 (366)
T 3k26_A 222 PDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ 299 (366)
T ss_dssp CSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred CccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence 122388999999998 7899999999999999998763 37788899999999999999 9
Q ss_pred CEEEEEECCCeEEEEEccCCce----eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1879 LAFATGSEDKTARLFDIRADQQ----IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1879 ~~LaSgS~DGtIrIWDLrtgk~----i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
++|++|+.||.|++||+.+++. ...+..+.+...|.+++|+|+|++|++|+.||.|++||+.
T Consensus 300 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 300 KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999998764 3355544447899999999999999999999999999975
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=326.92 Aligned_cols=287 Identities=15% Similarity=0.173 Sum_probs=230.9
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC--ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG--NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg--k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
+..|.++|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|+|++++|++|+.||.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 4457789999999999999999999999999999988 77788899999999999999999999999999999999986
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCce---eEEeeccccCCeEEEEECCCCCEEEE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQR---IHEVAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~---i~~il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
+. .......+.+|...+.++.|+++ ..+++++.||.|++||+++++. ...+...|...|.+++|+|++++|++
T Consensus 87 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 87 DG---TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred CC---ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 53 23345667789999999999854 5699999999999999998873 43333339999999999999999999
Q ss_pred EECCCeEEEEECC------------------CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce---
Q psy8748 1842 GSVDKSCKLWDFR------------------EKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ--- 1900 (2004)
Q Consensus 1842 GS~DGsIrIWDlr------------------s~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~--- 1900 (2004)
|+.||.|++||++ .++.+..+ +|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 9999999999985 34566666 8999999999999999999999999999999999887
Q ss_pred -eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------------------------------ee----
Q psy8748 1901 -IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT------------------------------HN---- 1945 (2004)
Q Consensus 1901 -i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge------------------------------~l---- 1945 (2004)
+..+ ..+...+.+++|+|+|++|++|+.++.+ +|+..... ..
T Consensus 243 ~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (377)
T 3dwl_C 243 ALITV--KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTA 319 (377)
T ss_dssp ECCCE--ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------
T ss_pred eeEee--cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccc
Confidence 4444 3566789999999999999999877766 66553111 00
Q ss_pred --EEE----------------ccCCCCeEEEEEcCCC-C---EEEEEECCCeEEEEEC
Q psy8748 1946 --GVL----------------SGHENRVTSISLSPNG-M---ALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1946 --~tL----------------~gHs~~VtsLaFSPDg-~---~LaSgS~DGtIrIWdl 1981 (2004)
..+ ..|.+.|+++++.+.. . .|+|||.||.|++||+
T Consensus 320 ~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 320 LRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 111 1399999999976543 3 6999999999999985
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=343.04 Aligned_cols=295 Identities=20% Similarity=0.334 Sum_probs=265.8
Q ss_pred ccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1682 LMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1682 ~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
....+.+.+|.+.|++++|+|+|++|++|+.||.|+|||+.+++.+..+..|...|.+++|+|++++|++|+.||.|++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC-CCCEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP-DGQYF 1839 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP-dg~~L 1839 (2004)
++.++ .....+.+|.+.+.++.|++++ .+++++.||.|++||+.++........+|...|.+++|+| +++.+
T Consensus 83 ~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 83 NYNTG------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp ETTTC------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred ECCCC------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence 99764 4566778899999999999655 6889999999999999988666667788999999999999 88999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCC-CCeEEEEEeC--CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1840 VTGSVDKSCKLWDFREKKCVQTFFGHE-ADVNSVCFHP--SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs~k~I~tl~~h~-s~ItsIafSP--dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
++++.||.|++||+.++.....+..+. ..+.+++|+| ++.++++++.||.|++||+.+++....+. .+...+.++
T Consensus 157 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~v~~~ 234 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFA 234 (814)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE--CCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc--CCCCCEEEE
Confidence 999999999999999887776666555 8899999999 99999999999999999999998887774 456789999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCC
Q psy8748 1917 AVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMA-LVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~-LaSgS~DGtIrIWdlstg 1984 (2004)
+|+|+|+++++|+.||.|++||+.+++....+..|...|.+++|+|++.. +++++.|+.+.+|++..+
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999873 244445777899998754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-30 Score=308.70 Aligned_cols=338 Identities=17% Similarity=0.195 Sum_probs=238.7
Q ss_pred CCCCCCeEEEEEcc-CCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1552 EPCKEQRNAVSFHA-CSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSP-dGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..|.+.|++++|+| +|++||+ |+.||+|++||+.+ +........ ..
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~-~~~dg~i~iw~~~~-------------~~~~~~~~~----------~~--------- 86 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLS-GGSDGVIVLYDLEN-------------SSRQSYYTC----------KA--------- 86 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEE-EETTSCEEEEECCC-------------CSSSSCEEE----------CE---------
T ss_pred eccCCcEEEEEEecCCCCEEEE-EcCCCeEEEEECCC-------------CcccceEec----------cc---------
Confidence 45889999999999 9999999 99999999999987 111111100 00
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC-CCCEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG-DSRHCVS 1709 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP-DG~~LAS 1709 (2004)
..........+|.+.|++++|+| ++.++++
T Consensus 87 -------------------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 87 -------------------------------------------------VCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp -------------------------------------------------EEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred -------------------------------------------------cccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 00001122456999999999999 7789999
Q ss_pred EeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecC---CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcccee
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQS---GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPd---g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vs 1786 (2004)
++.||.|++||+.+++....+. +...+.++.|++. +.++++|+.||.|++||+.++ .....+.+|...+.
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~------~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG------SCSHILQGHRQEIL 190 (408)
T ss_dssp EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS------CCCEEECCCCSCEE
T ss_pred EeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc------ceeeeecCCCCcEE
Confidence 9999999999999999888877 6778999999985 459999999999999999764 34456778999999
Q ss_pred eeEEeCCCc--EEEeecCCeEEEEECCCCceeEEee---------------ccccCCeEEEEECCCCCEEEEEECCCeEE
Q psy8748 1787 SCRFIDDTT--LLTGSGDMKIVTWNLETGQRIHEVA---------------QAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849 (2004)
Q Consensus 1787 svafsdd~~--LlSgS~DGtI~IWDl~tg~~i~~il---------------~~h~~~ItsLafSPdg~~LaSGS~DGsIr 1849 (2004)
++.|.+++. +++++.||.|++||++++....... ..|...|.+++|+|+++++++++.||.|+
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence 999997653 8899999999999998776332222 46888999999999999999999999999
Q ss_pred EEECCCCeEEEEEecCC-----CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1850 LWDFREKKCVQTFFGHE-----ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1850 IWDlrs~k~I~tl~~h~-----s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
+||+++++.......+. ..+........+..+++++.||.|++||+.+++.+..+ ..|...|++++|+|++++
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~ 348 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML--KGHYKTVDCCVFQSNFQE 348 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE--CCCSSCEEEEEEETTTTE
T ss_pred EEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee--ccCCCeEEEEEEcCCCCE
Confidence 99999887654433221 12222222334556777788999999999999998888 456688999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSP-NGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSP-Dg~~LaSgS~DGtIrIWdlst 1983 (2004)
|++|+.||.|++||+.+++.+.....+... ..+.+ ....+.+++.|+.+++|+...
T Consensus 349 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 349 LYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EEEEETTSCEEEEEECC-------------------------------------------
T ss_pred EEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCcc
Confidence 999999999999999998877655433221 22333 334456777899999998754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-30 Score=304.53 Aligned_cols=281 Identities=11% Similarity=0.098 Sum_probs=244.7
Q ss_pred cccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc---eEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEE
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN---KTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk---~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWD 1762 (2004)
...+|.+.|++++|+|++++|++|+.||.|++||+.++. ....+..|...|.+++|+|+++ ++++|+.||.|++|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 345899999999999999999999999999999998887 3455568999999999999999 999999999999999
Q ss_pred c-CCCCCCCcceEEEEEec--CccceeeeEEeCCCcEEEeecCCeEEEEECCC---------CceeEEeeccccCCeEEE
Q psy8748 1763 L-NNRDSTGAAKVIRELLG--YEGFLSSCRFIDDTTLLTGSGDMKIVTWNLET---------GQRIHEVAQAHIGDVVSI 1830 (2004)
Q Consensus 1763 l-~t~~~~~~~k~i~sl~g--h~~~Vssvafsdd~~LlSgS~DGtI~IWDl~t---------g~~i~~il~~h~~~ItsL 1830 (2004)
+ ..+. ...+.+ |...+.++.|.+++.+++++.||.|++||+++ ++.+..+ .|...|.++
T Consensus 86 ~~~~~~-------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~ 156 (342)
T 1yfq_A 86 LIGSPS-------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT--KVKNKIFTM 156 (342)
T ss_dssp SSSSSS-------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS--SSCCCEEEE
T ss_pred eccCCc-------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEE--eeCCceEEE
Confidence 9 7642 255667 99999999999877899999999999999987 5554333 388899999
Q ss_pred EECCCCCEEEEEECCCeEEEEECCC-Ce--EEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccCC------ce
Q psy8748 1831 SLSPDGQYFVTGSVDKSCKLWDFRE-KK--CVQTFFGHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRAD------QQ 1900 (2004)
Q Consensus 1831 afSPdg~~LaSGS~DGsIrIWDlrs-~k--~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtg------k~ 1900 (2004)
+|++++ +++++.||.|++||+++ +. .......|...+.+++|+| +++++++++.||.|++|+++.. +.
T Consensus 157 ~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 157 DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp EECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred EecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 999887 99999999999999988 44 3345557888999999999 9999999999999999999876 66
Q ss_pred eEEEcCCC-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC-CCCeEEEEEcCCCCEEEEEEC
Q psy8748 1901 IATYLPPN-------KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH-ENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1901 i~t~~~~~-------~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH-s~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
...+..+. +...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+| .+.|++++ |++.+|++|+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~ 312 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATS 312 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEE
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEec
Confidence 66664332 2348999999999999999999999999999999999999998 99999999 99999999999
Q ss_pred CCe-EEEEE
Q psy8748 1973 DQF-VKVWQ 1980 (2004)
Q Consensus 1973 DGt-IrIWd 1980 (2004)
||. .+.|.
T Consensus 313 Dg~~~~~~~ 321 (342)
T 1yfq_A 313 DDTFKTNAA 321 (342)
T ss_dssp CTHHHHCSS
T ss_pred CCccccccc
Confidence 998 55555
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-31 Score=320.15 Aligned_cols=282 Identities=17% Similarity=0.263 Sum_probs=240.7
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
..+++++|+|++++|++|+.||.|++||+.+++....+..| ..+....|++++++|++|+.||.|++||+..+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------ 129 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN------ 129 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC------
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc------
Confidence 44568999999999999999999999999887766656655 44556678999999999999999999998743
Q ss_pred eEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy8748 1773 KVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIW 1851 (2004)
.....+.+|...+.++.|+++ ..+++++.||.|++||+.+++.... +.+|...|.+++|+|++++|++++.||.|++|
T Consensus 130 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 208 (420)
T 3vl1_A 130 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT-LIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208 (420)
T ss_dssp EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEE-EECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceE-EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEe
Confidence 445566789999999999965 4689999999999999999887744 46899999999999999999999999999999
Q ss_pred ECCCCeEEEEEec---CCCCeEE---------------------EEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC
Q psy8748 1852 DFREKKCVQTFFG---HEADVNS---------------------VCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP 1907 (2004)
Q Consensus 1852 Dlrs~k~I~tl~~---h~s~Its---------------------IafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~ 1907 (2004)
|+++++.+..+.. +...+.+ ++|+|+++++++|+.||.|++||+++++....+. .
T Consensus 209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~ 287 (420)
T 3vl1_A 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP-S 287 (420)
T ss_dssp ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC-C
T ss_pred ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc-c
Confidence 9999999888875 3344444 4557889999999999999999999998877774 3
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCee-eEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1908 NKNSGFTSCAVSSSGR-YIFCGSDDNNVHVWDLLKTTH-NGVLSG-HENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1908 ~~~s~ItsLafSPdG~-~LaSGSsDGsIrIWDL~tge~-l~tL~g-Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
.+...+.+++|+|+++ ++++|+.||.|++||+++++. +..+.+ |...|.++.| +++.+|++++.||.|++|++.++
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 4567899999999999 999999999999999998754 667766 6777888855 57889999999999999998763
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-30 Score=316.14 Aligned_cols=281 Identities=23% Similarity=0.403 Sum_probs=248.1
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
.....+|...|.+++| +++++++|+.||.|++||+.+++....+.+|.+.|.+++| +++++++|+.||.|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 3344567888999887 7899999999999999999999999999999999999999 78999999999999999997
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeE--EeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIH--EVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~--~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
++ .....+.+|...+.++.|. ++.+++|+.||.|++||+.++.... ....+|...|.+++| +++++++|
T Consensus 202 ~~------~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~ 272 (435)
T 1p22_A 202 TG------EMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSA 272 (435)
T ss_dssp SC------CEEEEECCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred CC------cEEEEEcCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEE
Confidence 64 4567788899999999996 5689999999999999999877543 456789999999999 68899999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
+.||.|++||+++++.+..+.+|...|.++.|+ ++++++|+.||.|++||+++++.+..+. .|...+.+++| ++
T Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRCIRF--DN 346 (435)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEC--CS
T ss_pred eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEe--CCcCcEEEEEe--cC
Confidence 999999999999999999999999999999994 6799999999999999999999988884 56678999988 78
Q ss_pred CEEEEEeCCCeEEEEECCCCe---------eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTT---------HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge---------~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
+++++|+.||.|++||+.++. ++..+.+|.+.|++++| ++.+|++|+.||.|++||+.++..
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 999999999999999997665 78889999999999999 788999999999999999988653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=312.01 Aligned_cols=289 Identities=16% Similarity=0.252 Sum_probs=233.3
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------eEEEeeCCC------------CceEEEEEecCC
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN-----------KTQVIPLRS------------AWVMSVAFAQSG 1746 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk-----------~l~ti~~Ht------------~~ItsLafSPdg 1746 (2004)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 378999999999999999999999999999998877 477888998 889999999998
Q ss_pred --CEEEEeecCCeEEEEEcCCCCCCC---------------------c------------ceEEEE-EecCccceeeeEE
Q psy8748 1747 --NFVACGGMDNMCTVYDLNNRDSTG---------------------A------------AKVIRE-LLGYEGFLSSCRF 1790 (2004)
Q Consensus 1747 --~~LaSGS~DGtIrVWDl~t~~~~~---------------------~------------~k~i~s-l~gh~~~Vssvaf 1790 (2004)
..+++++.||.|++|++..+.... . ...... ..+|...|.++.|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 799999999999999987532100 0 001112 3578999999999
Q ss_pred eCCCc-EEEeecCCeEEEEECCCCceeEE-------eeccccCCeEEEEECCCC-CEEEEEECCCeEEEEECCCCeE---
Q psy8748 1791 IDDTT-LLTGSGDMKIVTWNLETGQRIHE-------VAQAHIGDVVSISLSPDG-QYFVTGSVDKSCKLWDFREKKC--- 1858 (2004)
Q Consensus 1791 sdd~~-LlSgS~DGtI~IWDl~tg~~i~~-------il~~h~~~ItsLafSPdg-~~LaSGS~DGsIrIWDlrs~k~--- 1858 (2004)
++++. +++| .||.|++||++++..... ...+|...|.+++|+|++ ++|++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 97655 5555 899999999985443323 245789999999999998 9999999999999999998886
Q ss_pred -EEEEecCCC------------CeEEEEEeCCCCEEEEEECCCeEEEEEccC-CceeEEEcCCCCCC-------------
Q psy8748 1859 -VQTFFGHEA------------DVNSVCFHPSGLAFATGSEDKTARLFDIRA-DQQIATYLPPNKNS------------- 1911 (2004)
Q Consensus 1859 -I~tl~~h~s------------~ItsIafSPdg~~LaSgS~DGtIrIWDLrt-gk~i~t~~~~~~~s------------- 1911 (2004)
+..+..|.. .|.+++|+|+|+++++++. |.|++||+++ ++.+..+..+....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 678888876 8999999999999999998 9999999997 77766664332100
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc---------------------------------cCCCCeEEE
Q psy8748 1912 GFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS---------------------------------GHENRVTSI 1958 (2004)
Q Consensus 1912 ~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~---------------------------------gHs~~VtsL 1958 (2004)
.+..++|+|+|++|++|+.||.|++||+.+++.+. +. .+...|.++
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 13348999999999999999999999999887753 22 234578999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1959 SLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1959 aFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
+|+|++.+||+++.++ +++|...
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEECC
T ss_pred EECCCCCEEEEEecce-eeeeccc
Confidence 9999999999998876 8888653
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=322.14 Aligned_cols=292 Identities=14% Similarity=0.204 Sum_probs=231.8
Q ss_pred CCCCCCeEEEEEcc-CCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1552 EPCKEQRNAVSFHA-CSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSP-dGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
.+|...|+||+||| ++++||+ |+.||+|+|||+.+ +..
T Consensus 116 ~~~~~~V~~l~~~P~~~~~las-Gs~dg~i~lWd~~~-------------~~~--------------------------- 154 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAV-GSKGGDIMLWNFGI-------------KDK--------------------------- 154 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEE-EETTSCEEEECSSC-------------CSC---------------------------
T ss_pred CCCCCCEEEEEEeCCCCCEEEE-EeCCCEEEEEECCC-------------CCc---------------------------
Confidence 45888899999999 5779999 99999999999876 100
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC-CCCEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG-DSRHCVS 1709 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP-DG~~LAS 1709 (2004)
.....+.+|.+.|++++|+| ++++|++
T Consensus 155 ----------------------------------------------------~~~~~~~gH~~~V~~l~f~p~~~~~l~s 182 (435)
T 4e54_B 155 ----------------------------------------------------PTFIKGIGAGGSITGLKFNPLNTNQFYA 182 (435)
T ss_dssp ----------------------------------------------------CEEECCCSSSCCCCEEEECSSCTTEEEE
T ss_pred ----------------------------------------------------eeEEEccCCCCCEEEEEEeCCCCCEEEE
Confidence 01223567999999999998 7899999
Q ss_pred EeCCCeEEEEECCCCceEEEeeC--CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceee
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPL--RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~--Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vss 1787 (2004)
|+.||+|++||+.++........ +...+.+++|+|++++|++|+.||.|++||++.. ....+.+|...|.+
T Consensus 183 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-------~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 183 SSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-------ELWNLRMHKKKVTH 255 (435)
T ss_dssp ECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-------BCCCSBCCSSCEEE
T ss_pred EeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-------eeEEEecccceEEe
Confidence 99999999999977654433333 3456889999999999999999999999998642 34456789999999
Q ss_pred eEEeCCC--cEEEeecCCeEEEEECCCCceeEEe--eccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q psy8748 1788 CRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEV--AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863 (2004)
Q Consensus 1788 vafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~i--l~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~ 1863 (2004)
+.|++++ .+++|+.||.|++||+++++....+ ..+|...|++++|+|+|++|++|+.||.|++||++++.....+.
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 9998653 5778999999999999887644332 35788999999999999999999999999999999988877776
Q ss_pred cCCC------CeEEEEEeCCCCEEEEEEC------------CCeEEEEEccCCceeEEEcCCCCCCCeEEE-EEcCCCCE
Q psy8748 1864 GHEA------DVNSVCFHPSGLAFATGSE------------DKTARLFDIRADQQIATYLPPNKNSGFTSC-AVSSSGRY 1924 (2004)
Q Consensus 1864 ~h~s------~ItsIafSPdg~~LaSgS~------------DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL-afSPdG~~ 1924 (2004)
.|.. .+....|+|++..+++++. ++.|++||..+++.+..+.. .+...|.++ +|+|+|++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 336 PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEFNPMGDT 414 (435)
T ss_dssp CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEECTTSSC
T ss_pred cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEECCCCCE
Confidence 6543 2345678888877777652 35799999999998877643 445667766 79999999
Q ss_pred EEEEeCCCeEEEEECCCCeee
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l 1945 (2004)
|++|+ |+.|+|||+++++..
T Consensus 415 lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 415 LASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEEEC-SSEEEECCCC-----
T ss_pred EEEEc-CCcEEEEECCcCeee
Confidence 99876 889999999887653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-30 Score=298.34 Aligned_cols=251 Identities=20% Similarity=0.218 Sum_probs=214.6
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC--CceEEEeeCCCCceEEEEEec--CCCEEEEeecCCeEEEE
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT--GNKTQVIPLRSAWVMSVAFAQ--SGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T--gk~l~ti~~Ht~~ItsLafSP--dg~~LaSGS~DGtIrVW 1761 (2004)
..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+ ++.+..+.+|.+.|.+++|++ ++++|++|+.||.|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45789999999999999999999999999999999874 367788999999999999986 38999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeC---CCcEEEeecCCeEEEEECCCCce-eEEeeccccCCeEEEEECCC--
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFID---DTTLLTGSGDMKIVTWNLETGQR-IHEVAQAHIGDVVSISLSPD-- 1835 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsd---d~~LlSgS~DGtI~IWDl~tg~~-i~~il~~h~~~ItsLafSPd-- 1835 (2004)
|+.++. ......+.+|...+.++.|.+ +..+++++.||.|++||++++.. ......+|...|.+++|+|+
T Consensus 83 d~~~~~----~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 83 KEENGR----WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp EBSSSC----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred EcCCCc----eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence 997642 223455678899999999986 45799999999999999987642 22445789999999999996
Q ss_pred -----------CCEEEEEECCCeEEEEECCCCe----EEEEEecCCCCeEEEEEeCCC---CEEEEEECCCeEEEEEccC
Q psy8748 1836 -----------GQYFVTGSVDKSCKLWDFREKK----CVQTFFGHEADVNSVCFHPSG---LAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1836 -----------g~~LaSGS~DGsIrIWDlrs~k----~I~tl~~h~s~ItsIafSPdg---~~LaSgS~DGtIrIWDLrt 1897 (2004)
+++|++|+.||.|++||++++. ....+.+|...|.+++|+|++ .+|++++.||+|++||+++
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 5799999999999999998765 567788999999999999984 8999999999999999987
Q ss_pred Cce--e-EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1898 DQQ--I-ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1898 gk~--i-~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
... . ..+....+...+.+++|+|+|++|++|+.||.|++|+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 532 1 222224556789999999999999999999999999975
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-31 Score=317.18 Aligned_cols=287 Identities=15% Similarity=0.148 Sum_probs=225.5
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
|+++|++++|+|+|++||+ |+.||+|++||+.+ +.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~-~~~d~~i~iw~~~~-------------~~------------------------------- 44 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVT-TTATNQVELYEQDG-------------NG------------------------------- 44 (377)
T ss_dssp CSSCCSCCEECSSSSEEEC-CCSSSCBCEEEEET-------------TE-------------------------------
T ss_pred CCCcEEEEEECCCCCEEEE-ecCCCEEEEEEccC-------------Cc-------------------------------
Confidence 5568999999999999999 99999999999876 10
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCC
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLD 1713 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~D 1713 (2004)
+.....+.+|.+.|++++|+|++++|++|+.|
T Consensus 45 ------------------------------------------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 45 ------------------------------------------------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp ------------------------------------------------EEECCCBCCCSSCEEEEEECTTTCCEEEEETT
T ss_pred ------------------------------------------------eEEEEEEecCCceEEEEEEeCCCCEEEEEeCC
Confidence 00233466799999999999999999999999
Q ss_pred CeEEEEECCCCc---eEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEec-CccceeeeE
Q psy8748 1714 GKLIIWDTWTGN---KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLG-YEGFLSSCR 1789 (2004)
Q Consensus 1714 GtIrVWDl~Tgk---~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~g-h~~~Vssva 1789 (2004)
|.|++||+.+++ ....+..|...|.+++|+|++++|++|+.||.|++||++.+. .......+.+ |...+.++.
T Consensus 77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN---DWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--------CCCCEEECSSCCSCEEEEE
T ss_pred CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc---cceeeeEeecccCCCeEEEE
Confidence 999999999887 677788899999999999999999999999999999998653 1223455666 899999999
Q ss_pred EeCC-CcEEEeecCCeEEEEECCC------------------CceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEE
Q psy8748 1790 FIDD-TTLLTGSGDMKIVTWNLET------------------GQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1790 fsdd-~~LlSgS~DGtI~IWDl~t------------------g~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrI 1850 (2004)
|+++ ..+++++.||.|++||+.. ++.... + +|.+.|.+++|+|++++|++++.||.|++
T Consensus 154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE-Y-PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC-C-CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc-c-cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 9965 4688999999999999863 223322 3 88999999999999999999999999999
Q ss_pred EECCCCeE----EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce--------------------------
Q psy8748 1851 WDFREKKC----VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ-------------------------- 1900 (2004)
Q Consensus 1851 WDlrs~k~----I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~-------------------------- 1900 (2004)
||+++++. +..+.+|...|.+++|+|+++++++|+.++.+ +|+......
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGRE 310 (377)
T ss_dssp CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCC
T ss_pred EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccc
Confidence 99998876 77888999999999999999999988766555 776542110
Q ss_pred -e---------EEE--------------cCCCCCCCeEEEEEcCCC-C---EEEEEeCCCeEEEEEC
Q psy8748 1901 -I---------ATY--------------LPPNKNSGFTSCAVSSSG-R---YIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1901 -i---------~t~--------------~~~~~~s~ItsLafSPdG-~---~LaSGSsDGsIrIWDL 1939 (2004)
. ..+ ....|...|+++++.+.+ . .+++|+.||.|++||+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 311 EEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp C-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 000 011267889999976643 3 6999999999999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-29 Score=303.43 Aligned_cols=263 Identities=16% Similarity=0.281 Sum_probs=216.1
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
+.+|.+.|++++|+|+|++||+|+.||.|++||+.+++.+..+.+|...+.++.|+ +..+++|+.|+.+++|+....
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~- 219 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA- 219 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS-
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc-
Confidence 34688899999999999999999999999999999999999999999999988875 789999999999999998753
Q ss_pred CCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCcee---EEeeccccCCeEEEEECCCCC-EEEEE
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRI---HEVAQAHIGDVVSISLSPDGQ-YFVTG 1842 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i---~~il~~h~~~ItsLafSPdg~-~LaSG 1842 (2004)
......+.+|...+..+.+.++ ..+++++.||.+++||..+++.. ......|.+.|.+++|+|.+. .++++
T Consensus 220 ----~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~ 295 (420)
T 4gga_A 220 ----EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 295 (420)
T ss_dssp ----SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEE
T ss_pred ----ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEE
Confidence 3556778899999999999854 56889999999999999877532 233567889999999999654 55554
Q ss_pred --ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEE
Q psy8748 1843 --SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS--EDKTARLFDIRADQQIATYLPPNKNSGFTSCAV 1918 (2004)
Q Consensus 1843 --S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS--~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLaf 1918 (2004)
+.||.|++||+.+++....+.. ...+.++.|+++++.+++++ .||.|++||+.+++.+..+ .+|...|++++|
T Consensus 296 ~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l--~gH~~~V~~l~~ 372 (420)
T 4gga_A 296 GGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--KGHTSRVLSLTM 372 (420)
T ss_dssp ECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE--CCCSSCEEEEEE
T ss_pred eecCCCEEEEEeCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE--cCCCCCEEEEEE
Confidence 4799999999999998888865 46788999999999988766 6899999999999999888 467789999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEE
Q psy8748 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1919 SPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF 1960 (2004)
+|+|++|++|+.||+|++||+....+......+...+....|
T Consensus 373 spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 373 SPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp CTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred cCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 999999999999999999999887776666655555444444
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=310.49 Aligned_cols=285 Identities=12% Similarity=0.147 Sum_probs=225.1
Q ss_pred ccceeEEEEeCCCCEEEEEeCCC-------eEEEEECCCCce----------EEEeeCCCCceEEEEEecCCCEEEEe--
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDG-------KLIIWDTWTGNK----------TQVIPLRSAWVMSVAFAQSGNFVACG-- 1752 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DG-------tIrVWDl~Tgk~----------l~ti~~Ht~~ItsLafSPdg~~LaSG-- 1752 (2004)
..+|++++|+|||++|++||.|. .|++|++..+.. ...+..|...|.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 35899999999999999998643 599999876532 12356788888888765 6666665
Q ss_pred ---------ecCCeEEEEEcCCCCCCCcceEEEE-----EecCccceeeeEEeCCCc-EE--EeecCCeEEEEECCCCce
Q psy8748 1753 ---------GMDNMCTVYDLNNRDSTGAAKVIRE-----LLGYEGFLSSCRFIDDTT-LL--TGSGDMKIVTWNLETGQR 1815 (2004)
Q Consensus 1753 ---------S~DGtIrVWDl~t~~~~~~~k~i~s-----l~gh~~~Vssvafsdd~~-Ll--SgS~DGtI~IWDl~tg~~ 1815 (2004)
+.|+.+++|++..... ....... ...+...+.+++|++++. ++ +++.|+.|++||+.+++.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVND--QLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTT--EEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCc--eEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence 4577899999876432 1111111 122345688899997665 44 345789999999999988
Q ss_pred eEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEE--EecCCCCeEEEEEeCCCCEEEEEECCC----e
Q psy8748 1816 IHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQT--FFGHEADVNSVCFHPSGLAFATGSEDK----T 1889 (2004)
Q Consensus 1816 i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~t--l~~h~s~ItsIafSPdg~~LaSgS~DG----t 1889 (2004)
+..+ .|.+.|.+++|+|+|+++++++.+ .+.+|+..++..+.. ...|...|.+++|+|+++++++++.|+ .
T Consensus 170 ~~~~--~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 170 KFEI--ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV 246 (365)
T ss_dssp EEEE--ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred EEEe--CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence 7665 577889999999999999999854 567777777665543 356888999999999999999999887 6
Q ss_pred EEEEEccCCceeE--EEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-ccCCCCeEEEEEcCCCCE
Q psy8748 1890 ARLFDIRADQQIA--TYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVL-SGHENRVTSISLSPNGMA 1966 (2004)
Q Consensus 1890 IrIWDLrtgk~i~--t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL-~gHs~~VtsLaFSPDg~~ 1966 (2004)
++.||+..+.... ......+...|++++|+|+|++||+|+.||+|+|||+.+++++..+ .+|...|++++|+|||++
T Consensus 247 i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~ 326 (365)
T 4h5i_A 247 LTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY 326 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE
T ss_pred EeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE
Confidence 8889987665422 2223466678999999999999999999999999999999999885 789999999999999999
Q ss_pred EEEEECCCeEEEEECCC
Q psy8748 1967 LVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1967 LaSgS~DGtIrIWdlst 1983 (2004)
||||+.|++|+||++..
T Consensus 327 laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 327 VASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEETTSEEEEEECCT
T ss_pred EEEEeCCCeEEEEEcCC
Confidence 99999999999999964
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=304.59 Aligned_cols=249 Identities=18% Similarity=0.262 Sum_probs=215.0
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++.+++|+.||.|++||+...
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~---- 206 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIA---- 206 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS----
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccC----
Confidence 77899999999999999999999999999999999999999999999999994 789999999999999999753
Q ss_pred cceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC-EEEEEE--CCC
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ-YFVTGS--VDK 1846 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~-~LaSGS--~DG 1846 (2004)
......+.+|...+.++.|+++ ..+++|+.||.|++||+.+++.... ...|...|.+++|+|++. ++++|+ .||
T Consensus 207 -~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 207 -NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-KTNHNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp -SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-ECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred -cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-ecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence 2456778889999999999965 5689999999999999999887744 467899999999999765 555654 699
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS--EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS--~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
.|++||+++++.+..+. +...|.+++|+|+++++++++ .||.|++||+.+++.........|...|.+++|+|+|++
T Consensus 285 ~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 363 (401)
T 4aez_A 285 QIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRI 363 (401)
T ss_dssp EEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSE
T ss_pred EEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCE
Confidence 99999999999888884 677899999999999999954 899999999998777666555677789999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEE
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL 1948 (2004)
|++|+.||.|++||+.+++.+...
T Consensus 364 l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 364 LSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECTTSEEEEEECCC-------
T ss_pred EEEEeCCCcEEEEECCCCcccccc
Confidence 999999999999999998877654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=289.44 Aligned_cols=306 Identities=17% Similarity=0.160 Sum_probs=224.4
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1550 APEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1550 a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
...+|++.|++++|+|+|++||+ |+.||+|++||+.+ +..
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~~~~-------------~~~-------------------------- 45 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVAT-CSSDQHIKVFKLDK-------------DTS-------------------------- 45 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEE-EETTSEEEEEEECS-------------SSC--------------------------
T ss_pred cCcccccceeEEEEcCCCCEEEE-eeCCCeEEEEECCC-------------CCC--------------------------
Confidence 34579999999999999999999 99999999999876 000
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC--CCCEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG--DSRHC 1707 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP--DG~~L 1707 (2004)
.......+.+|.+.|++++|+| ++++|
T Consensus 46 ---------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~d~~~l 74 (351)
T 3f3f_A 46 ---------------------------------------------------NWELSDSWRAHDSSIVAIDWASPEYGRII 74 (351)
T ss_dssp ---------------------------------------------------CEEEEEEEECCSSCEEEEEECCGGGCSEE
T ss_pred ---------------------------------------------------cceecceeccCCCcEEEEEEcCCCCCCEE
Confidence 0012345678999999999999 69999
Q ss_pred EEEeCCCeEEEEECCCC---------ceEEEeeCCCCceEEEEEecC--CCEEEEeecCCeEEEEEcCCCCCCCcceEEE
Q psy8748 1708 VSGSLDGKLIIWDTWTG---------NKTQVIPLRSAWVMSVAFAQS--GNFVACGGMDNMCTVYDLNNRDSTGAAKVIR 1776 (2004)
Q Consensus 1708 ASGS~DGtIrVWDl~Tg---------k~l~ti~~Ht~~ItsLafSPd--g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~ 1776 (2004)
++|+.||.|++||+.++ +....+..|...|.+++|+|+ ++++++++.||.|++||+.++..........
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 154 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS 154 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE
T ss_pred EEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccc
Confidence 99999999999999887 557788899999999999999 9999999999999999998776544433322
Q ss_pred EE-------ecCccceeeeEEeC----CCcEEEeecCCeEEEEECCCCcee-EEeeccccCCeEEEEECCCC----CEEE
Q psy8748 1777 EL-------LGYEGFLSSCRFID----DTTLLTGSGDMKIVTWNLETGQRI-HEVAQAHIGDVVSISLSPDG----QYFV 1840 (2004)
Q Consensus 1777 sl-------~gh~~~Vssvafsd----d~~LlSgS~DGtI~IWDl~tg~~i-~~il~~h~~~ItsLafSPdg----~~La 1840 (2004)
.. .++...+.++.|.+ +..+++++.++.+.+|+...+... .....+|...|++++|+|++ ++|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 155 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred cccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence 22 25677888999986 567999999999988888777642 34456799999999999998 8999
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE----CCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1841 TGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS----EDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1841 SGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS----~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
+|+.||.|++||++.+........+..........+.......+. ..+.+.+|+....+.+..+ ..|...|+++
T Consensus 235 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~ 312 (351)
T 3f3f_A 235 TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH--DDHNGEVWSV 312 (351)
T ss_dssp EEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE--CTTSSCEEEE
T ss_pred EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE--ecccccEEEE
Confidence 999999999999987665444444334444444444443333333 3445666666666666666 4567889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE
Q psy8748 1917 AVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDGsIrIWDL~tge~l~tL 1948 (2004)
+|+|+|++|++|+.||.|++||+.+++....+
T Consensus 313 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 313 SWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 99999999999999999999999887554443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-29 Score=292.12 Aligned_cols=260 Identities=21% Similarity=0.309 Sum_probs=217.1
Q ss_pred EEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC---CCcEEEeecCCe
Q psy8748 1728 QVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID---DTTLLTGSGDMK 1804 (2004)
Q Consensus 1728 ~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd---d~~LlSgS~DGt 1804 (2004)
..+.+|.+.|.+++|+|+|++|++|+.||.|++|++... .......+.+|.+.|.++.|.+ +..+++|+.||+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~----~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE----THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS----CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC----CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 356789999999999999999999999999999999743 2345677889999999999973 567999999999
Q ss_pred EEEEECCCCce-eEEeeccccCCeEEEEECCC--CCEEEEEECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCC--
Q psy8748 1805 IVTWNLETGQR-IHEVAQAHIGDVVSISLSPD--GQYFVTGSVDKSCKLWDFREKK--CVQTFFGHEADVNSVCFHPS-- 1877 (2004)
Q Consensus 1805 I~IWDl~tg~~-i~~il~~h~~~ItsLafSPd--g~~LaSGS~DGsIrIWDlrs~k--~I~tl~~h~s~ItsIafSPd-- 1877 (2004)
|++||+.+++. .......|...|.+++|+|+ +.+|++|+.||.|++||++++. ....+.+|...|.+++|+|+
T Consensus 79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence 99999988752 22335678999999999997 8899999999999999998753 24567789999999999997
Q ss_pred -----------CCEEEEEECCCeEEEEEccCCc----eeEEEcCCCCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEEC
Q psy8748 1878 -----------GLAFATGSEDKTARLFDIRADQ----QIATYLPPNKNSGFTSCAVSSSG---RYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1878 -----------g~~LaSgS~DGtIrIWDLrtgk----~i~t~~~~~~~s~ItsLafSPdG---~~LaSGSsDGsIrIWDL 1939 (2004)
+++|++|+.||+|++||+++++ ....+ ..|...|.+++|+|++ ++|++|+.||+|++||+
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 5799999999999999998766 33344 5677899999999984 89999999999999999
Q ss_pred CCCe---eeEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEee
Q psy8748 1940 LKTT---HNGVL--SGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVY 1993 (2004)
Q Consensus 1940 ~tge---~l~tL--~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~ 1993 (2004)
.+.. ....+ ..|...|.+++|+|+|++|++++.||.|++|+......|+.+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~~~~~ 295 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEC---
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEecccc
Confidence 7643 12233 468889999999999999999999999999998855557665543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=283.49 Aligned_cols=245 Identities=16% Similarity=0.293 Sum_probs=209.4
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS 1768 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~ 1768 (2004)
.+|...|++++|+|+++++++|+.||+|++||+.+++.+..+.+|...+.++.+ ++..+++|+.++.+++|+....
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~-- 139 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA-- 139 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS--
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCC--
Confidence 458889999999999999999999999999999999999999999998876555 5789999999999999998754
Q ss_pred CCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCcee---EEeeccccCCeEEEEECCCCCEE---EE
Q psy8748 1769 TGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRI---HEVAQAHIGDVVSISLSPDGQYF---VT 1841 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i---~~il~~h~~~ItsLafSPdg~~L---aS 1841 (2004)
......+.+|...+..+.+... ..+++++.||.|++||+.+++.. ......+.+.|.++++++++..+ ++
T Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 216 (318)
T 4ggc_A 140 ---EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 216 (318)
T ss_dssp ---SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred ---ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe
Confidence 3556777889999999998854 56889999999999999887533 22345677889999999976533 35
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEc
Q psy8748 1842 GSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS--EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVS 1919 (2004)
Q Consensus 1842 GS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS--~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafS 1919 (2004)
++.++.|++||.+........ .+...+..+.|++++..+++++ .||.|++||+++++.+..+ .+|...|++++|+
T Consensus 217 ~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l--~gH~~~V~~l~~s 293 (318)
T 4ggc_A 217 GTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--KGHTSRVLSLTMS 293 (318)
T ss_dssp CTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE--CCCSSCEEEEEEC
T ss_pred cCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE--cCCCCCEEEEEEc
Confidence 667899999999988766554 5678899999999999887765 7999999999999999888 4677899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCe
Q psy8748 1920 SSGRYIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1920 PdG~~LaSGSsDGsIrIWDL~tge 1943 (2004)
|+|++|++|+.||+|+|||+.+..
T Consensus 294 pdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 294 PDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TTSSCEEEEETTTEEEEECCSCCC
T ss_pred CCCCEEEEEecCCeEEEEECCCCC
Confidence 999999999999999999987653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=307.73 Aligned_cols=294 Identities=15% Similarity=0.232 Sum_probs=231.9
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcc
Q psy8748 1554 CKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSI 1633 (2004)
Q Consensus 1554 Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSi 1633 (2004)
|.+.|++++|+|+|++||+ |+.||.|+|||+.+ ++....
T Consensus 27 ~~~~V~~v~~s~~g~~la~-g~~dg~v~iw~~~~-------------~~~~~~--------------------------- 65 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLAT-GDKGGRVVIFQQEQ-------------ENKIQS--------------------------- 65 (447)
T ss_dssp GGGSEEEEEECSSSSEEEE-EETTSEEEEEEECC------------------C---------------------------
T ss_pred ccCcEEEEEECCCCCEEEE-EcCCCeEEEEEecC-------------CCCCCc---------------------------
Confidence 5678999999999999999 99999999999987 110000
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccc------------cceeEEEEe
Q psy8748 1634 NIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHI------------NKVNSVHYS 1701 (2004)
Q Consensus 1634 di~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt------------~~VtsLaFS 1701 (2004)
.....+.....+.+|. +.|++++|+
T Consensus 66 -------------------------------------------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 66 -------------------------------------------HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp -------------------------------------------CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred -------------------------------------------ccccceeEecccccccccccccccccccCceEEEEEc
Confidence 0001122345566776 889999999
Q ss_pred CCC--CEEEEEeCCCeEEEEECCCCceE---------------------------------------EE-eeCCCCceEE
Q psy8748 1702 GDS--RHCVSGSLDGKLIIWDTWTGNKT---------------------------------------QV-IPLRSAWVMS 1739 (2004)
Q Consensus 1702 PDG--~~LASGS~DGtIrVWDl~Tgk~l---------------------------------------~t-i~~Ht~~Its 1739 (2004)
|++ .+|++++.||.|++||+.++... .. ..+|...|.+
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 998 79999999999999998764432 12 3679999999
Q ss_pred EEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEE-------EEecCccceeeeEEeCC--CcEEEeecCCeEEEEEC
Q psy8748 1740 VAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIR-------ELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNL 1810 (2004)
Q Consensus 1740 LafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~-------sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl 1810 (2004)
++|+|++++|++| .||.|++||+.... .... .+.+|...+.++.|+++ ..+++|+.||.|++||+
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEITD-----RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTEEE-----EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCCCC-----ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 9999999999998 79999999997321 2222 25578899999999976 47999999999999999
Q ss_pred CCCcee---EEeeccccC------------CeEEEEECCCCCEEEEEECCCeEEEEECCC-CeEEEEEecCCCC------
Q psy8748 1811 ETGQRI---HEVAQAHIG------------DVVSISLSPDGQYFVTGSVDKSCKLWDFRE-KKCVQTFFGHEAD------ 1868 (2004)
Q Consensus 1811 ~tg~~i---~~il~~h~~------------~ItsLafSPdg~~LaSGS~DGsIrIWDlrs-~k~I~tl~~h~s~------ 1868 (2004)
++++.. ...+..|.. .|.+++|+|++++|++++. |.|++||++. ++.+..+.+|...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 988751 133455554 8999999999999999998 9999999997 8888888777532
Q ss_pred ---------eEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC------------------------------CCC
Q psy8748 1869 ---------VNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP------------------------------PNK 1909 (2004)
Q Consensus 1869 ---------ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~------------------------------~~~ 1909 (2004)
+..++|+|++++|++|+.||.|++||+.+++.+..... ...
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDF 415 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCT
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccccccccc
Confidence 23499999999999999999999999998877542211 122
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
...|..++|+|+|++|++|+.++ +++|..
T Consensus 416 ~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 416 NKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred CCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 35688999999999999998876 888874
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=296.18 Aligned_cols=266 Identities=19% Similarity=0.237 Sum_probs=222.7
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECC--CCceEEEeeCCCCceEEEEEecC--CCEEEEeecCCeEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTW--TGNKTQVIPLRSAWVMSVAFAQS--GNFVACGGMDNMCT 1759 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~--Tgk~l~ti~~Ht~~ItsLafSPd--g~~LaSGS~DGtIr 1759 (2004)
+...+.+|.+.|++++|+|++++|++|+.||.|++||+. +++....+.+|...|.+++|+++ +++|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 467789999999999999999999999999999999998 56777888999999999999977 89999999999999
Q ss_pred EEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC--CC
Q psy8748 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD--GQ 1837 (2004)
Q Consensus 1760 VWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd--g~ 1837 (2004)
+||+.++. . ........|...|.+++|+|+ ++
T Consensus 83 iwd~~~~~------~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~ 116 (379)
T 3jrp_A 83 IWKEENGR------W----------------------------------------SQIAVHAVHSASVNSVQWAPHEYGP 116 (379)
T ss_dssp EEEEETTE------E----------------------------------------EEEEEECCCSSCEEEEEECCGGGCS
T ss_pred EEEcCCCc------e----------------------------------------eEeeeecCCCcceEEEEeCCCCCCC
Confidence 99986421 0 011223457788999999999 99
Q ss_pred EEEEEECCCeEEEEECCCC--eEEEEEecCCCCeEEEEEeC-------------CCCEEEEEECCCeEEEEEccCCceeE
Q psy8748 1838 YFVTGSVDKSCKLWDFREK--KCVQTFFGHEADVNSVCFHP-------------SGLAFATGSEDKTARLFDIRADQQIA 1902 (2004)
Q Consensus 1838 ~LaSGS~DGsIrIWDlrs~--k~I~tl~~h~s~ItsIafSP-------------dg~~LaSgS~DGtIrIWDLrtgk~i~ 1902 (2004)
++++++.||.|++||++.+ .....+..|...|.+++|+| ++.++++++.||.|++||++++....
T Consensus 117 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 196 (379)
T 3jrp_A 117 LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 196 (379)
T ss_dssp EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE
T ss_pred EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce
Confidence 9999999999999999877 34556678999999999999 69999999999999999998765432
Q ss_pred E--EcCCCCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCCCe---eeEEE--ccCCCCeEEEEEcCCCCEEEEEEC
Q psy8748 1903 T--YLPPNKNSGFTSCAVSSS---GRYIFCGSDDNNVHVWDLLKTT---HNGVL--SGHENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1903 t--~~~~~~~s~ItsLafSPd---G~~LaSGSsDGsIrIWDL~tge---~l~tL--~gHs~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
. .....|...|.+++|+|+ +++|++|+.||.|++||+.++. ..... ..|...|++++|+|++++|++++.
T Consensus 197 ~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 197 VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred eeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 1 222466788999999999 8999999999999999998864 22222 348899999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEEeecC
Q psy8748 1973 DQFVKVWQESNTIVWKVLKVYNL 1995 (2004)
Q Consensus 1973 DGtIrIWdlstg~l~k~Ik~~~~ 1995 (2004)
||.|++|++..+..|..+.....
T Consensus 277 dg~i~iw~~~~~~~~~~~~~~~~ 299 (379)
T 3jrp_A 277 DNKVTLWKENLEGKWEPAGEVHQ 299 (379)
T ss_dssp SSSEEEEEEEETTEEEEEEEEC-
T ss_pred CCcEEEEeCCCCCccccccceec
Confidence 99999999997767777665543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-29 Score=291.65 Aligned_cols=287 Identities=12% Similarity=0.117 Sum_probs=238.2
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.+|++.|++++|+|+|++||+ |+.||+|++|++.. +..
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~-~~~d~~v~iw~~~~-------------~~~---------------------------- 45 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLI-TSWDGSLTVYKFDI-------------QAK---------------------------- 45 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEE-EETTSEEEEEEEET-------------TTT----------------------------
T ss_pred cCCCCcEEEEEEcCCCCEEEE-EcCCCeEEEEEeCC-------------CCc----------------------------
Confidence 468899999999999999999 99999999999877 100
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCC-EEEEE
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSR-HCVSG 1710 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~-~LASG 1710 (2004)
..+...+.+|...|++++|+|+++ +|++|
T Consensus 46 --------------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 46 --------------------------------------------------NVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp --------------------------------------------------EEEEEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred --------------------------------------------------cccceeeeecCCceEEEEECCCCCcEEEEE
Confidence 001123347899999999999999 99999
Q ss_pred eCCCeEEEEEC-CCCceEEEeeC--CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc---ceEEEEEecCccc
Q psy8748 1711 SLDGKLIIWDT-WTGNKTQVIPL--RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA---AKVIRELLGYEGF 1784 (2004)
Q Consensus 1711 S~DGtIrVWDl-~Tgk~l~ti~~--Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~---~k~i~sl~gh~~~ 1784 (2004)
+.||.|++||+ .+++. ..+.. |...|.+++|+| ++.+++++.||.|++||+........ ......+ .+...
T Consensus 76 ~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~ 152 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-KVKNK 152 (342)
T ss_dssp ETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-SSCCC
T ss_pred cCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE-eeCCc
Confidence 99999999999 77755 67788 999999999999 99999999999999999875100000 1111122 27788
Q ss_pred eeeeEEeCCCcEEEeecCCeEEEEECCC-Cce-eEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCC-----
Q psy8748 1785 LSSCRFIDDTTLLTGSGDMKIVTWNLET-GQR-IHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREK----- 1856 (2004)
Q Consensus 1785 Vssvafsdd~~LlSgS~DGtI~IWDl~t-g~~-i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~----- 1856 (2004)
+.++.|.++. +++++.+|.|++||+++ +.. .......|...+.+++|+| +++++++++.||.|++||++..
T Consensus 153 v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 153 IFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp EEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred eEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 9999998776 99999999999999998 553 2334457888999999999 9999999999999999999876
Q ss_pred -eEEEEEecCCC---------CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCC-CCCeEEEEEcCCCCEE
Q psy8748 1857 -KCVQTFFGHEA---------DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNK-NSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1857 -k~I~tl~~h~s---------~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~-~s~ItsLafSPdG~~L 1925 (2004)
+....+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+. .+ ...|.+++ |+|++|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~~~--~~~~~l 307 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA--KFNEDSVVKIA--CSDNIL 307 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--CCSSSEEEEEE--ECSSEE
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh--cccCCCceEec--CCCCeE
Confidence 67777877765 99999999999999999999999999999999887763 44 67899998 999999
Q ss_pred EEEeCCCe-EEEEE
Q psy8748 1926 FCGSDDNN-VHVWD 1938 (2004)
Q Consensus 1926 aSGSsDGs-IrIWD 1938 (2004)
++|+.||. .+.|.
T Consensus 308 ~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 308 CLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEECTHHHHCSS
T ss_pred EEEecCCccccccc
Confidence 99999998 44444
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-29 Score=292.08 Aligned_cols=291 Identities=12% Similarity=0.165 Sum_probs=239.6
Q ss_pred ccccccccccccccceeEEEEeCC---CCEEEEEeCCCeEEEEECCC-CceE-EEeeCCCCceEEEEEecCCCEEEEeec
Q psy8748 1680 VKLMPKKSLKGHINKVNSVHYSGD---SRHCVSGSLDGKLIIWDTWT-GNKT-QVIPLRSAWVMSVAFAQSGNFVACGGM 1754 (2004)
Q Consensus 1680 lk~~pi~sL~GHt~~VtsLaFSPD---G~~LASGS~DGtIrVWDl~T-gk~l-~ti~~Ht~~ItsLafSPdg~~LaSGS~ 1754 (2004)
.+......+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +... ..+.+|...|.+++|+|++++|++|+.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 345567789999999999999999 69999999999999999987 5555 678899999999999999999999999
Q ss_pred CCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE--eCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEE
Q psy8748 1755 DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF--IDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSIS 1831 (2004)
Q Consensus 1755 DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf--sdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLa 1831 (2004)
||.|++||+.++. .....+|...+.++.| .++ ..+++++.||.|++||+++++.+..+. ....+.++.
T Consensus 107 dg~v~iwd~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~ 177 (368)
T 3mmy_A 107 DKTAKMWDLSSNQ-------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ--LPERCYCAD 177 (368)
T ss_dssp TSEEEEEETTTTE-------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE--CSSCEEEEE
T ss_pred CCcEEEEEcCCCC-------ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe--cCCCceEEE
Confidence 9999999997642 2335678999999999 544 458999999999999999988775552 334666666
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeEEEEE--ecCCCCeEEEEEeCCCCE----EEEEECCCeEEEEEccCC---ceeE
Q psy8748 1832 LSPDGQYFVTGSVDKSCKLWDFREKKCVQTF--FGHEADVNSVCFHPSGLA----FATGSEDKTARLFDIRAD---QQIA 1902 (2004)
Q Consensus 1832 fSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl--~~h~s~ItsIafSPdg~~----LaSgS~DGtIrIWDLrtg---k~i~ 1902 (2004)
+. +..+++++.++.+++||++........ ..+...+.++++.+++.. +++++.||.|++||++.. ....
T Consensus 178 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 178 VI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF 255 (368)
T ss_dssp EE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred ec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence 66 458899999999999999876543332 234456677777665544 999999999999999877 3444
Q ss_pred EEcCCCC----------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEEC
Q psy8748 1903 TYLPPNK----------NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1903 t~~~~~~----------~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
.+..+.. ...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|...|++++|+|+|++|++|+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence 4432211 116999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEC
Q psy8748 1973 DQFVKVWQE 1981 (2004)
Q Consensus 1973 DGtIrIWdl 1981 (2004)
|+..+.|++
T Consensus 336 d~~~~~~~~ 344 (368)
T 3mmy_A 336 YDWSKGHEF 344 (368)
T ss_dssp CCSTTCGGG
T ss_pred ccccccccc
Confidence 886555554
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=309.72 Aligned_cols=290 Identities=11% Similarity=0.191 Sum_probs=236.6
Q ss_pred CCCCCCeEEEEEcc-CCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1552 EPCKEQRNAVSFHA-CSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSP-dGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
+.|.+.|++++|+| +|++||+ |+.||+|+|||+.+ .. .+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s-~s~dg~v~vwd~~~-------------~~-----~~--------------------- 99 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLIT-GSDQGVIKIWNLKE-------------II-----VG--------------------- 99 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEE-EETTSEEEEEEHHH-------------HH-----TT---------------------
T ss_pred cCCCCceEEEEECCCCCCEEEE-ecCCceEEEeECcc-------------cc-----cC---------------------
Confidence 56889999999999 9999999 99999999999866 00 00
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
....+...+ +|.+.|++++|+|++++|++|
T Consensus 100 -------------------------------------------------~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 100 -------------------------------------------------EVYSSSLTY-DCSSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp -------------------------------------------------CCCSCSEEE-ECSSCEEEEEECTTSSEEEEE
T ss_pred -------------------------------------------------cccceeeec-cCCCCEEEEEEeCCCCEEEEE
Confidence 000011112 489999999999999999999
Q ss_pred eCCCeEEEEECC---CCceEEEeeC------------CCCceEEEE--EecCCCEEEEeecCCeEEEEEcCCCCCCCcce
Q psy8748 1711 SLDGKLIIWDTW---TGNKTQVIPL------------RSAWVMSVA--FAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1711 S~DGtIrVWDl~---Tgk~l~ti~~------------Ht~~ItsLa--fSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k 1773 (2004)
+.||.|++||+. +++....... +...+.++. ++++++++++|+.||.|++||+.++ .
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~ 203 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL------E 203 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC------C
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------e
Confidence 999999999984 5655543332 455667776 5578999999999999999999764 4
Q ss_pred EEEEEec--CccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC----CCCEEEEEECCC
Q psy8748 1774 VIRELLG--YEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP----DGQYFVTGSVDK 1846 (2004)
Q Consensus 1774 ~i~sl~g--h~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP----dg~~LaSGS~DG 1846 (2004)
....+.+ |...+.+++|+++ ..+++|+.||.|++||+++++.+..+...|...|.+++|+| ++.++++|+.||
T Consensus 204 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 204 RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC
Confidence 5566666 7899999999865 46889999999999999998887666557778999996665 677999999999
Q ss_pred eEEEEECCCCeEEEEEec--------------------------CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce
Q psy8748 1847 SCKLWDFREKKCVQTFFG--------------------------HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ 1900 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~--------------------------h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~ 1900 (2004)
.|++||+++++.+..+.+ |...|.+++|+ ++++|++|+.||.|++||+.+++.
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 999999999998887764 44568889999 778999999999999999999887
Q ss_pred eEEEcCC-----------------------------------CCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEE
Q psy8748 1901 IATYLPP-----------------------------------NKNSGFTSCAVSSS--GRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1901 i~t~~~~-----------------------------------~~~s~ItsLafSPd--G~~LaSGSsDGsIrIWD 1938 (2004)
...+..+ .|...|++++|+++ +.+|++|+.||.|++|+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 7666432 16788999999998 78999999999999995
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-29 Score=304.72 Aligned_cols=256 Identities=22% Similarity=0.410 Sum_probs=209.8
Q ss_pred cccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCC
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
.+.+|.+.|.+++| +++++++|+.||.|++||+.+++....+.+|...|.+++|+ ++.+++|+.||.|++||+.++
T Consensus 168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 243 (435)
T 1p22_A 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASP 243 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSS
T ss_pred EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCC
Confidence 34579999999998 78899999999999999999999999999999999999997 569999999999999999865
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK 1846 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG 1846 (2004)
. .........+|...+.++.+ +++.+++|+.||.|++||+++++.+.. ..+|...|.+++++ ++++++|+.||
T Consensus 244 ~---~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~~g~~dg 316 (435)
T 1p22_A 244 T---DITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRT-LNGHKRGIACLQYR--DRLVVSGSSDN 316 (435)
T ss_dssp S---CCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEEE--TTEEEEEETTS
T ss_pred C---CceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcEEEE-EcCCCCcEEEEEeC--CCEEEEEeCCC
Confidence 4 33444677889999999999 677899999999999999999988754 46889999999994 78999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc---------eeEEEcCCCCCCCeEEEE
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ---------QIATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk---------~i~t~~~~~~~s~ItsLa 1917 (2004)
.|++||+++++.+..+.+|...|.+++| ++.++++|+.||.|++||+.++. ....+ ..|...|.+++
T Consensus 317 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~ 392 (435)
T 1p22_A 317 TIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL--VEHSGRVFRLQ 392 (435)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE--CCCSSCCCCEE
T ss_pred eEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec--cCCCCCeEEEE
Confidence 9999999999999999999999999999 78899999999999999998765 55555 45667899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEE
Q psy8748 1918 VSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1918 fSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF 1960 (2004)
| ++++|++|+.||.|++||+.+........ ...+..++.|
T Consensus 393 ~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 432 (435)
T 1p22_A 393 F--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTY 432 (435)
T ss_dssp E--CSSCEEECCSSSEEEEEC----------------------
T ss_pred e--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceee
Confidence 9 78899999999999999998766544332 2234444444
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=300.44 Aligned_cols=269 Identities=21% Similarity=0.223 Sum_probs=211.6
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eEEEeeCCCCceEEEEEec--CCCEEEEeecCCeEEEE
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQ--SGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSP--dg~~LaSGS~DGtIrVW 1761 (2004)
..+.+|.+.|++++|+|+|++||+|+.||+|++||+.++. .+..+.+|.+.|.+++|++ ++++|++|+.||.|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3567999999999999999999999999999999998875 4677899999999999986 48999999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCC---CcEEEeecCCeEEEEECCCCcee--EEeeccccCCeEEEEECCC-
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD---TTLLTGSGDMKIVTWNLETGQRI--HEVAQAHIGDVVSISLSPD- 1835 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd---~~LlSgS~DGtI~IWDl~tg~~i--~~il~~h~~~ItsLafSPd- 1835 (2004)
|++++. ......+.+|...|.+++|+++ ..+++|+.||.|++||+..+... .....+|...|.+++|+|+
T Consensus 87 d~~~~~----~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 87 REENGT----WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CCSSSC----CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred ECCCCc----ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 997542 2345567889999999999864 46999999999999999876432 2445678899999999997
Q ss_pred ----------------CCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeEEEEEeCCC----CEEEEEECCCeEEE
Q psy8748 1836 ----------------GQYFVTGSVDKSCKLWDFREK---KCVQTFFGHEADVNSVCFHPSG----LAFATGSEDKTARL 1892 (2004)
Q Consensus 1836 ----------------g~~LaSGS~DGsIrIWDlrs~---k~I~tl~~h~s~ItsIafSPdg----~~LaSgS~DGtIrI 1892 (2004)
+++|++|+.||.|++||++.. +.+..+.+|...|.+++|+|++ .+|++++.||+|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 478999999999999999755 4667788999999999999986 78889999999999
Q ss_pred EEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEEC
Q psy8748 1893 FDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1893 WDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
||+.+.... . .....+..|.+.|.+++|+|++++|++|+.
T Consensus 243 w~~~~~~~~---------------------~-------------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 243 WTCDDASSN---------------------T-------------------WSPKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp EECSSTTCC---------------------C-------------------CBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred EEccCcccc---------------------c-------------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 987643110 0 000112346778889999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEEeecCCCC
Q psy8748 1973 DQFVKVWQESNTIVWKVLKVYNLEKK 1998 (2004)
Q Consensus 1973 DGtIrIWdlstg~l~k~Ik~~~~h~~ 1998 (2004)
||.|++|+......|..++.+....+
T Consensus 283 D~~v~lw~~~~~g~~~~~~~~~~~~~ 308 (316)
T 3bg1_A 283 DNKVTLWKESVDGQWVCISDVNKGQG 308 (316)
T ss_dssp SSCEEEEEECTTSCEEEEEECC----
T ss_pred CCeEEEEEECCCCcEEEeeeccCCCC
Confidence 99999998875555777777665444
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=299.76 Aligned_cols=296 Identities=15% Similarity=0.210 Sum_probs=243.8
Q ss_pred cceeEEEEeCCCCEE-EEEeCCCeEEEEECCCC----ceEEEeeCCCCceEEEEEec-CCCEEEEeecCCeEEEEEcCCC
Q psy8748 1693 NKVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTG----NKTQVIPLRSAWVMSVAFAQ-SGNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~Tg----k~l~ti~~Ht~~ItsLafSP-dg~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
.....++++|+...+ ++++.||.|+||++.+. .....+.+|.+.|.+++|+| ++++|++|+.||.|++|++..+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 345578898877644 45788999999998664 23445678999999999999 8999999999999999999875
Q ss_pred CCCCc-ceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEee-ccccCCeEEEEECCCCCEEEEE
Q psy8748 1767 DSTGA-AKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEVA-QAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1767 ~~~~~-~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~il-~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
..... ......+.+|...+.++.|++++ .+++++.||.|++||+.+++....+. ..|...|.+++|+|++++|+++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 32211 13456778899999999999764 68999999999999999998875553 6799999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEE-ecCCCC-eEEEEEeCCCCEEEEE---ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEE
Q psy8748 1843 SVDKSCKLWDFREKKCVQTF-FGHEAD-VNSVCFHPSGLAFATG---SEDKTARLFDIRADQQIATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl-~~h~s~-ItsIafSPdg~~LaSg---S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLa 1917 (2004)
+.||.|++||+++++.+..+ ..|.+. +.++.|+|++.++++| +.||.|++||+++++.........+...+.+++
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 99999999999999999888 688775 8999999999999999 789999999999876532222234557799999
Q ss_pred EcCCCCEEEE-EeCCCeEEEEECCCCee-eEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1918 VSSSGRYIFC-GSDDNNVHVWDLLKTTH-NGVLSG--HENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1918 fSPdG~~LaS-GSsDGsIrIWDL~tge~-l~tL~g--Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
|+|+++++++ |+.||.|++||+.+++. +..+.. |...|.+++|+|++.++++ .|+.+++|++.++.. +.+.
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~-~~i~ 349 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC-EPIA 349 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE-EEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE-EEEE
Confidence 9999999975 55799999999998874 444443 5689999999999998775 567999999998753 4443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=299.05 Aligned_cols=245 Identities=13% Similarity=0.129 Sum_probs=196.4
Q ss_pred cccccccceeEEEEeCCCCEEEEEe-----------CCCeEEEEECCCCceEEE----e-----eCCCCceEEEEEecCC
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCVSGS-----------LDGKLIIWDTWTGNKTQV----I-----PLRSAWVMSVAFAQSG 1746 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LASGS-----------~DGtIrVWDl~Tgk~l~t----i-----~~Ht~~ItsLafSPdg 1746 (2004)
.|.+|.+.|.+++++ ++.+++|+ .|+.+++|++.++..... . ..+...+.+++|+|||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 466788889888765 55666654 477899999866532211 1 1245568999999999
Q ss_pred CEEEE--eecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEE-eeccc
Q psy8748 1747 NFVAC--GGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHE-VAQAH 1823 (2004)
Q Consensus 1747 ~~LaS--GS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~-il~~h 1823 (2004)
+++++ ++.|+.|++||+.++ .....+ .|...|.+++|++++.+++.+.++.+++|+..++..... ....|
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~------~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~ 218 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDL------TEKFEI-ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDK 218 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTT------EEEEEE-ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCT
T ss_pred CEEEEEECCCCCEEEEeECCCC------cEEEEe-CCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCC
Confidence 98765 447899999999764 333444 467789999999887766666677788888887776543 34568
Q ss_pred cCCeEEEEECCCCCEEEEEECCC----eEEEEECCCCeE----EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEc
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVDK----SCKLWDFREKKC----VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDI 1895 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~DG----sIrIWDlrs~k~----I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDL 1895 (2004)
...|.+++|+|+++++++++.|+ .++.||...... ...+.+|...|++++|+|+|++|++|+.||+|+|||+
T Consensus 219 ~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 219 NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL 298 (365)
T ss_dssp TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC
Confidence 88899999999999999999887 688899876643 3456789999999999999999999999999999999
Q ss_pred cCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1896 RADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1896 rtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
++++.+..+. ..|...|++++|+|||++|++|+.|++|+|||+..
T Consensus 299 ~~~~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 299 KDLSMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTTEEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCcEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999887763 46778999999999999999999999999999854
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-28 Score=286.04 Aligned_cols=286 Identities=18% Similarity=0.237 Sum_probs=232.1
Q ss_pred CCCCCCCCeEEEEEccC---CCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccc
Q psy8748 1550 APEPCKEQRNAVSFHAC---STLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLM 1626 (2004)
Q Consensus 1550 a~e~Hk~~VtsVsFSPd---Gk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll 1626 (2004)
....|.+.|++++|+|+ |++||+ |+.||+|++||+.+ .+
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~-~~~dg~i~iw~~~~--------------------~~----------------- 75 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIA-GSWANDVRCWEVQD--------------------SG----------------- 75 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEE-EETTSEEEEEEECT--------------------TS-----------------
T ss_pred eccCCCCceEEEEEcCCCCCceEEEE-ECCCCcEEEEEcCC--------------------CC-----------------
Confidence 44568999999999999 699999 99999999999876 00
Q ss_pred cCCCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCE
Q psy8748 1627 MKPTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRH 1706 (2004)
Q Consensus 1627 ~spdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~ 1706 (2004)
......+.+|.+.|++++|+|++++
T Consensus 76 -------------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~ 100 (368)
T 3mmy_A 76 -------------------------------------------------------QTIPKAQQMHTGPVLDVCWSDDGSK 100 (368)
T ss_dssp -------------------------------------------------------CEEEEEEEECSSCEEEEEECTTSSE
T ss_pred -------------------------------------------------------ceeEEEeccccCCEEEEEECcCCCE
Confidence 0012345679999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEE--ecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF--AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLaf--SPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
|++|+.||.|++||+.+++... +..|...|.+++| +++++++++++.||.|++||+.++. ....+..+. .
T Consensus 101 l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~-~ 172 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN------PMMVLQLPE-R 172 (368)
T ss_dssp EEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS------CSEEEECSS-C
T ss_pred EEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc------EEEEEecCC-C
Confidence 9999999999999999988776 5669999999999 8899999999999999999998653 223333333 4
Q ss_pred eeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEe-eccccCCeEEEEECCCCCE----EEEEECCCeEEEEECCCC---
Q psy8748 1785 LSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV-AQAHIGDVVSISLSPDGQY----FVTGSVDKSCKLWDFREK--- 1856 (2004)
Q Consensus 1785 Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~i-l~~h~~~ItsLafSPdg~~----LaSGS~DGsIrIWDlrs~--- 1856 (2004)
+.++.+. ...+++++.++.+.+||+......... ...+...+.++++.+++.. +++++.||.|++||++..
T Consensus 173 ~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 173 CYCADVI-YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp EEEEEEE-TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred ceEEEec-CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 5555554 347888999999999999877654333 2334455667766665544 999999999999999987
Q ss_pred eEEEEEecCCC------------CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1857 KCVQTFFGHEA------------DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1857 k~I~tl~~h~s------------~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
..+..+..|.. .|.+++|+|++++|++|+.||.|++||+++++.+..+. .+...|.+++|+|+|++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~ 329 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE--QLDQPISACCFNHNGNI 329 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--CCSSCEEEEEECTTSSC
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec--CCCCCceEEEECCCCCe
Confidence 45667777765 79999999999999999999999999999998887774 56688999999999999
Q ss_pred EEEEeCCCeEEEEEC
Q psy8748 1925 IFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL 1939 (2004)
|++|+.|+..+.|++
T Consensus 330 l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 330 FAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEEECCCSTTCGGG
T ss_pred EEEEecccccccccc
Confidence 999999886555443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-29 Score=292.78 Aligned_cols=250 Identities=18% Similarity=0.202 Sum_probs=205.0
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..+|++.|++++|+|+|++||+ |+.|++|+|||+.+ +..
T Consensus 9 ~~~H~~~V~~v~~s~~g~~las-gs~D~~v~lwd~~~-------------~~~--------------------------- 47 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLAT-CSSDRSVKIFDVRN-------------GGQ--------------------------- 47 (316)
T ss_dssp -----CCEEEEEECGGGCEEEE-EETTTEEEEEEEET-------------TEE---------------------------
T ss_pred cccccCeEEEeeEcCCCCEEEE-EeCCCeEEEEEecC-------------CCc---------------------------
Confidence 3469999999999999999999 99999999999866 110
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeC--CCCEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSG--DSRHCV 1708 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSP--DG~~LA 1708 (2004)
.....+.+|.+.|++++|++ ++++|+
T Consensus 48 ----------------------------------------------------~~~~~l~gH~~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 48 ----------------------------------------------------ILIADLRGHEGPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp ----------------------------------------------------EEEEEEECCSSCEEEEEECCGGGSSCEE
T ss_pred ----------------------------------------------------EEEEEEcCCCccEEEEEeCCCCCCCEEE
Confidence 01235678999999999986 489999
Q ss_pred EEeCCCeEEEEECCCC--ceEEEeeCCCCceEEEEEecC--CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1709 SGSLDGKLIIWDTWTG--NKTQVIPLRSAWVMSVAFAQS--GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~Tg--k~l~ti~~Ht~~ItsLafSPd--g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
+|+.||+|++||+.++ .....+.+|...|.+++|+|+ +.+|++|+.||.|++|++.... .........+|...
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~---~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG---QWEVKKINNAHTIG 152 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS---CEEECCBTTSSSSC
T ss_pred EEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC---CcceeeeeccccCC
Confidence 9999999999999887 456678899999999999998 7899999999999999997542 12223445678888
Q ss_pred eeeeEEeCC------------------CcEEEeecCCeEEEEECCCCc--eeEEeeccccCCeEEEEECCCC----CEEE
Q psy8748 1785 LSSCRFIDD------------------TTLLTGSGDMKIVTWNLETGQ--RIHEVAQAHIGDVVSISLSPDG----QYFV 1840 (2004)
Q Consensus 1785 Vssvafsdd------------------~~LlSgS~DGtI~IWDl~tg~--~i~~il~~h~~~ItsLafSPdg----~~La 1840 (2004)
+.++.|.++ ..+++|+.|+.|++||++.+. .....+.+|...|.+++|+|++ ++|+
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEE
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEE
Confidence 888888764 479999999999999997653 2234467899999999999986 8999
Q ss_pred EEECCCeEEEEECCCC---e-EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEcc
Q psy8748 1841 TGSVDKSCKLWDFREK---K-CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1841 SGS~DGsIrIWDlrs~---k-~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLr 1896 (2004)
+|+.||+|++||+++. . ....+..|...|.+++|+|++++|++++.||.|++|+..
T Consensus 233 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 233 SCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999999998762 1 123445788999999999999999999999999999975
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-28 Score=284.49 Aligned_cols=254 Identities=19% Similarity=0.257 Sum_probs=215.5
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCC
Q psy8748 1550 APEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKP 1629 (2004)
Q Consensus 1550 a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~sp 1629 (2004)
....|++.|++++|+|+|++||+ |+.||+|+|||+.. ..
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~-------------~~--------------------------- 44 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLAT-CSSDKTIKIFEVEG-------------ET--------------------------- 44 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEE-EETTSCEEEEEEET-------------TE---------------------------
T ss_pred EecCCcccEEEEEEcCCCCEEEE-EECCCcEEEEecCC-------------Cc---------------------------
Confidence 34569999999999999999999 99999999999864 00
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCC--CCEE
Q psy8748 1630 TSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGD--SRHC 1707 (2004)
Q Consensus 1630 dgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPD--G~~L 1707 (2004)
......+.+|.+.|++++|+++ +++|
T Consensus 45 ----------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l 72 (379)
T 3jrp_A 45 ----------------------------------------------------HKLIDTLTGHEGPVWRVDWAHPKFGTIL 72 (379)
T ss_dssp ----------------------------------------------------EEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred ----------------------------------------------------ceeeeEecCCCCcEEEEEeCCCCCCCEE
Confidence 0013346679999999999987 9999
Q ss_pred EEEeCCCeEEEEECCCCc--eEEEeeCCCCceEEEEEecC--CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcc
Q psy8748 1708 VSGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQS--GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG 1783 (2004)
Q Consensus 1708 ASGS~DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPd--g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~ 1783 (2004)
++|+.||.|++||+.+++ ....+..|...|.+++|+|+ ++++++++.||.|++||+.... ........+|..
T Consensus 73 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~~~ 148 (379)
T 3jrp_A 73 ASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG----TTSPIIIDAHAI 148 (379)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS----CCCEEEEECCTT
T ss_pred EEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC----ceeeEEecCCCC
Confidence 999999999999999987 77778889999999999999 9999999999999999998653 223345678899
Q ss_pred ceeeeEEeC--------------CCcEEEeecCCeEEEEECCCCcee---EEeeccccCCeEEEEECCC---CCEEEEEE
Q psy8748 1784 FLSSCRFID--------------DTTLLTGSGDMKIVTWNLETGQRI---HEVAQAHIGDVVSISLSPD---GQYFVTGS 1843 (2004)
Q Consensus 1784 ~Vssvafsd--------------d~~LlSgS~DGtI~IWDl~tg~~i---~~il~~h~~~ItsLafSPd---g~~LaSGS 1843 (2004)
.+.++.|.+ +..+++++.||.|++||++++... .....+|...|.+++|+|+ ++++++++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 999999997 567999999999999999876532 2345678999999999999 89999999
Q ss_pred CCCeEEEEECCCCe---EEEEE--ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce
Q psy8748 1844 VDKSCKLWDFREKK---CVQTF--FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ 1900 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~k---~I~tl--~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~ 1900 (2004)
.||.|++||++.+. ..... ..|...|.+++|+|++++|++++.||.|++||+..+..
T Consensus 229 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 99999999998763 22222 34888999999999999999999999999999986544
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=296.61 Aligned_cols=252 Identities=13% Similarity=0.163 Sum_probs=208.2
Q ss_pred ccccccccceeEEEEeCCCCEE-EEEeCCCeEEEEECC--CCceEEEee--CCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHC-VSGSLDGKLIIWDTW--TGNKTQVIP--LRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~--Tgk~l~ti~--~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
....+|.+.|++++|+|++++| ++|+.||.|++||+. +++....+. .|...|.+++|+|++++|++|+.+|.|++
T Consensus 96 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 96 LGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS 175 (450)
T ss_dssp ----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence 3456799999999999999996 899999999999999 888888876 57789999999999999999999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC---CC
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD---GQ 1837 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd---g~ 1837 (2004)
|++........ ....+.+|...|.+++|+|+ ++
T Consensus 176 ~~~~~~~~~~~--------------------------------------------~~~~~~~h~~~v~~~~~sp~~~~~~ 211 (450)
T 2vdu_B 176 IDINSIPEEKF--------------------------------------------TQEPILGHVSMLTDVHLIKDSDGHQ 211 (450)
T ss_dssp EETTSCCCSSC--------------------------------------------CCCCSEECSSCEEEEEEEECTTSCE
T ss_pred EecCCcccccc--------------------------------------------cceeeecccCceEEEEEcCCCCCCc
Confidence 99865421100 00123467889999999999 99
Q ss_pred EEEEEECCCeEEEEECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC---------
Q psy8748 1838 YFVTGSVDKSCKLWDFREKKCVQT-FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP--------- 1907 (2004)
Q Consensus 1838 ~LaSGS~DGsIrIWDlrs~k~I~t-l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~--------- 1907 (2004)
+|++|+.||.|++||+++++.+.. +.+|...|.+++|+ ++++|++++.||.|++||+++++.+..+...
T Consensus 212 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 290 (450)
T 2vdu_B 212 FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLND 290 (450)
T ss_dssp EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCT
T ss_pred EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhh
Confidence 999999999999999999888777 55899999999999 9999999999999999999999987776421
Q ss_pred --------------CCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEC--CCC---eeeEEEccCCCCeEEEEEcCCCCEE
Q psy8748 1908 --------------NKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDL--LKT---THNGVLSGHENRVTSISLSPNGMAL 1967 (2004)
Q Consensus 1908 --------------~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL--~tg---e~l~tL~gHs~~VtsLaFSPDg~~L 1967 (2004)
.....+..++|+|+++++++++ .|+.|++|++ ..+ +.+..+.+| +.|.+++|+|++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v 369 (450)
T 2vdu_B 291 QHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQV 369 (450)
T ss_dssp TSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEE
T ss_pred cccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEE
Confidence 2235689999999999999999 8999999999 565 777788888 899999999965434
Q ss_pred EEEEC------CCeEEEEECCC
Q psy8748 1968 VTSSW------DQFVKVWQESN 1983 (2004)
Q Consensus 1968 aSgS~------DGtIrIWdlst 1983 (2004)
++++. +..|.+|.+..
T Consensus 370 ~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 370 TLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EECCTTCCSSCCCSEEEEEEET
T ss_pred EEecccCCCCCCcceEEEEEEc
Confidence 43333 45688887653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-29 Score=314.86 Aligned_cols=324 Identities=9% Similarity=0.078 Sum_probs=248.3
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
.....+|++|+|||||+++|| ++.|++|+ |... +.++ ++|...+.. +..+|++
T Consensus 12 ~~~~~~v~sv~~SpDG~~iAS-as~D~TV~--d~~~-------------~~~l---~gh~~~v~~--------V~FsPdg 64 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLT-TFPDISIG--QPKY-------------AKDI---NCNSKNLFH--------VKEFPLE 64 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEE-CSSSEEEE--EECC-------------CSCC---SSBGGGTEE--------EEEECCC
T ss_pred hHhhccEEEEEECCCCCEEEE-EcCCceee--cccc-------------ccee---cCCCccEEE--------EEECCCC
Confidence 346679999999999999999 99999999 6444 2222 444443333 3335655
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
.... +..| .........+ +|...|.+++|||||++||+++
T Consensus 65 ~~~~-~~~~--------------------------------------~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s 104 (588)
T 2j04_A 65 FENK-LDFE--------------------------------------LAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLS 104 (588)
T ss_dssp CCCT-TTTS--------------------------------------CCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEE
T ss_pred Ccce-EEEE--------------------------------------eCCCceEeec-CCCCcEEEEEECCCCCEEEEEe
Confidence 1111 0000 0011111122 4688999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCC-----ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC-cceEEEEE----ecC
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSA-----WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG-AAKVIREL----LGY 1781 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~-----~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~-~~k~i~sl----~gh 1781 (2004)
.||.|++||... .+..+. |.. .|.+++|+|||++|++|+.||.|++|++..+.... .+-....+ .+|
T Consensus 105 ~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh 181 (588)
T 2j04_A 105 NNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGS 181 (588)
T ss_dssp TTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTC
T ss_pred CCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccc
Confidence 999999999544 666666 665 49999999999999999999999999998753111 11234554 667
Q ss_pred ccceeeeEEeCCCcEEEeecCCeEEEEECCCCcee---EEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1782 EGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRI---HEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC 1858 (2004)
Q Consensus 1782 ~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i---~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~ 1858 (2004)
...|.+++|++++ +++++.|+.|++||+..+... ..+..+|...|.+++|+ |+.+++++ +|.|++||+.+++.
T Consensus 182 ~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 182 KDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp CCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred cccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE
Confidence 7899999999988 999999999999999887742 22334788899999999 68899887 69999999998887
Q ss_pred EEEEecCCCCeEEEEE--eCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy8748 1859 VQTFFGHEADVNSVCF--HPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHV 1936 (2004)
Q Consensus 1859 I~tl~~h~s~ItsIaf--SPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrI 1936 (2004)
.....+|...+..++| +|++..+++++.||+ ++|..+ .++++|++..+++. |+++++
T Consensus 258 ~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------------------~~~~spd~~l~a~~--d~~v~l 316 (588)
T 2j04_A 258 SSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------------------ELHVTADNIIAPYL--EKKFKK 316 (588)
T ss_dssp EEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS------------------SEEEECCCSSHHHH--HHHHHH
T ss_pred EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec------------------cEEECCCceEEEEc--CCEEEE
Confidence 4444489999999999 999999999999999 999977 15689999887774 999999
Q ss_pred EECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEEC
Q psy8748 1937 WDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1937 WDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
|+...+. ...+.+ ...|.+++|+|||+.+|+++.
T Consensus 317 W~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 317 WSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred EECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 9975443 444443 667999999999999999874
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=319.29 Aligned_cols=290 Identities=13% Similarity=0.114 Sum_probs=216.0
Q ss_pred CEEEEEeCCCeEEEEECCCCceE----EEeeCCCCceEEEEEecC------CCEEEEeecCCeEEEEEcCCCCCCC----
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKT----QVIPLRSAWVMSVAFAQS------GNFVACGGMDNMCTVYDLNNRDSTG---- 1770 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l----~ti~~Ht~~ItsLafSPd------g~~LaSGS~DGtIrVWDl~t~~~~~---- 1770 (2004)
+.+++++.||+|+|||+.+++.. ..+..|.+.|.+++|+|+ +.+|++|+.||+|++||+..+....
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 34444667899999999887642 346678889999999996 5799999999999999997653221
Q ss_pred -cceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEE--EECCCC-CEEEEEECCC
Q psy8748 1771 -AAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSI--SLSPDG-QYFVTGSVDK 1846 (2004)
Q Consensus 1771 -~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsL--afSPdg-~~LaSGS~DG 1846 (2004)
.......+.+|...+.++.|++++.+++|+.||+|++||++++........+|...|.++ +|++++ .+|++|+.||
T Consensus 254 ~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~ 333 (524)
T 2j04_B 254 MCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG 333 (524)
T ss_dssp CCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS
T ss_pred eecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC
Confidence 112234677899999999999888999999999999999998755445567899999999 568887 8999999999
Q ss_pred eEEEEECCCCeEEEEEecCCC--CeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEA--DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s--~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
+|++||+++++....+.+|.. .|.+++|+|++..+++++.|++|++||++++.+...+. +|...|.+++|+|+|++
T Consensus 334 tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~--gH~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 334 YFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV--SRETTITAIGVSRLHPM 411 (524)
T ss_dssp EEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE--ECSSCEEEEECCSSCCB
T ss_pred eEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee--cCCCceEEEEeCCCCCe
Confidence 999999998877666666653 58899999999999999999999999999988877664 57789999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEcc-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEEeecCCCC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSG-----HENRVTSISLSPNGMALVTSSWDQFVKVWQES-NTIVWKVLKVYNLEKK 1998 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~g-----Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls-tg~l~k~Ik~~~~h~~ 1998 (2004)
|++|+.||+|++||+... ....... +...|.+++|+|++..+ ....+ +.+|... ++ ..+.....|.+
T Consensus 412 l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~~--~~~~~~~~~g---~~~~~l~gh~~ 484 (524)
T 2j04_B 412 VLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDSS--YEVYPLTVND---VSKAKIDAHGI 484 (524)
T ss_dssp CEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE-EECCC--CCCCC----------------CCC
T ss_pred EEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE-EccCC--ceecccccCC---cceeeecCCCc
Confidence 999999999999998653 2221111 12257899999999855 23222 3344332 23 23445567888
Q ss_pred ccccc
Q psy8748 1999 TIFCV 2003 (2004)
Q Consensus 1999 ~VtsV 2003 (2004)
.|++|
T Consensus 485 ~V~~V 489 (524)
T 2j04_B 485 NITCT 489 (524)
T ss_dssp SCCCE
T ss_pred eEEEE
Confidence 88776
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=285.75 Aligned_cols=252 Identities=17% Similarity=0.245 Sum_probs=212.9
Q ss_pred ccccccccceeEEEEeC-CCCEEEEEeCCCeEEEEECCCC-------ceEEEeeCCCCceEEEEEecCC-CEEEEeecCC
Q psy8748 1686 KSLKGHINKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWTG-------NKTQVIPLRSAWVMSVAFAQSG-NFVACGGMDN 1756 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~Tg-------k~l~ti~~Ht~~ItsLafSPdg-~~LaSGS~DG 1756 (2004)
..+.+|.+.|++++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++ +++++|+.||
T Consensus 75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg 154 (402)
T 2aq5_A 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154 (402)
T ss_dssp CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence 34678999999999999 9999999999999999999988 6678889999999999999998 6999999999
Q ss_pred eEEEEEcCCCCCCCcceEEEEE--ecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCC-eEEEEE
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIREL--LGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD-VVSISL 1832 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl--~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~-ItsLaf 1832 (2004)
.|++||+.++ .....+ .+|...+.++.|+++ ..+++++.||.|++||+++++.+..+...|.+. +.+++|
T Consensus 155 ~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 155 VILVWDVGTG------AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF 228 (402)
T ss_dssp CEEEEETTTT------EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred EEEEEECCCC------CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence 9999999754 455666 789999999999954 569999999999999999998886664667665 899999
Q ss_pred CCCCCEEEEE---ECCCeEEEEECCCCeE-EEEE-ecCCCCeEEEEEeCCCCEEEE-EECCCeEEEEEccCCce-eEEEc
Q psy8748 1833 SPDGQYFVTG---SVDKSCKLWDFREKKC-VQTF-FGHEADVNSVCFHPSGLAFAT-GSEDKTARLFDIRADQQ-IATYL 1905 (2004)
Q Consensus 1833 SPdg~~LaSG---S~DGsIrIWDlrs~k~-I~tl-~~h~s~ItsIafSPdg~~LaS-gS~DGtIrIWDLrtgk~-i~t~~ 1905 (2004)
+|+++++++| +.||.|++||+++++. +... ..+...+.+++|+|+++++++ |+.||.|++||+.+++. ...+.
T Consensus 229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp CSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred cCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 9999999999 6899999999987653 2222 257788999999999999875 44799999999998874 33333
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1906 PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1906 ~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
...+...+.+++|+|++.++++ .++.+++|++.++...
T Consensus 309 ~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 309 MFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred ccccCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 3335678999999999998875 5679999999876543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=279.85 Aligned_cols=282 Identities=13% Similarity=0.148 Sum_probs=216.6
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEE-EEeecCCeEEEEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFV-ACGGMDNMCTVYD 1762 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~L-aSGS~DGtIrVWD 1762 (2004)
++..+.+|.+.|++++|+|||++|++|+.|| +++||..+++.......+ .+..+++.++++.+ ++|+.|+.|++||
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 3446688999999999999999999998775 789999887766554433 47788899888877 5678889999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCC-ceeEEeeccccCCeEEEEECCCCCEEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETG-QRIHEVAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg-~~i~~il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
..++ +....+. +...+.++.+.++..++ ..++.|++||+.++ +.+..+.. ....+++++ .++++
T Consensus 88 ~~~~------~~~~~~~-~~~~v~~v~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~ 152 (355)
T 3vu4_A 88 DVKK------QDVSRIK-VDAPVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVY 152 (355)
T ss_dssp TTTT------EEEEEEE-CSSCEEEEEECSSEEEE--EETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEE
T ss_pred CCCC------cEEEEEE-CCCceEEEEEcCCEEEE--EEcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEE
Confidence 9764 3344443 56688899887654333 35789999999988 55433322 344556666 56666
Q ss_pred --EECCCeEEEEECCCCe----------------EEEEEecCCCCeEEEEEeCCCCEEEEEECCCe-EEEEEccCCceeE
Q psy8748 1842 --GSVDKSCKLWDFREKK----------------CVQTFFGHEADVNSVCFHPSGLAFATGSEDKT-ARLFDIRADQQIA 1902 (2004)
Q Consensus 1842 --GS~DGsIrIWDlrs~k----------------~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGt-IrIWDLrtgk~i~ 1902 (2004)
|+.||.|++||++++. .+..+.+|...|.+++|+|+|++|++|+.||+ |++||+++++.+.
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 5789999999999765 26788899999999999999999999999998 9999999999998
Q ss_pred EEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EEEc---------------------cCCCCeEEEE
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN--GVLS---------------------GHENRVTSIS 1959 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l--~tL~---------------------gHs~~VtsLa 1959 (2004)
.+....|...|.+++|+|+|++|++|+.||+|++||+..+... ..+. .+......++
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIA 312 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEE
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEE
Confidence 8853336789999999999999999999999999999765311 1111 1122347799
Q ss_pred EcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1960 LSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1960 FSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
|+++++++++++.||.+++|++..
T Consensus 313 ~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 313 WISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp ESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEEEc
Confidence 999999999999999999999764
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=271.28 Aligned_cols=234 Identities=17% Similarity=0.209 Sum_probs=181.4
Q ss_pred ceeEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCC-CCCCc
Q psy8748 1694 KVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR-DSTGA 1771 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~-~~~~~ 1771 (2004)
.+..+++.++++++ ++|+.|++|++||..+++.+..+. +...|.++.|+++. ++++ .++.|++||+.+. +....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITD 135 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSC
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEE
Confidence 46678888888877 567788999999999999998887 56689999998654 4443 4789999999875 32222
Q ss_pred ceEEEEEecCccceeeeEEeCCCcEEE--eecCCeEEEEECCCCce---------------eEEeeccccCCeEEEEECC
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTTLLT--GSGDMKIVTWNLETGQR---------------IHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~LlS--gS~DGtI~IWDl~tg~~---------------i~~il~~h~~~ItsLafSP 1834 (2004)
... ....+++.. ..+++ |+.+|.|++||+.++.. ....+.+|.+.|.+++|+|
T Consensus 136 ~~~---------~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~ 205 (355)
T 3vu4_A 136 DIR---------FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR 205 (355)
T ss_dssp CEE---------EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT
T ss_pred ecc---------CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC
Confidence 211 222334444 45554 68899999999998651 0245678999999999999
Q ss_pred CCCEEEEEECCCe-EEEEECCCCeEEEEEe-c-CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeE--E------
Q psy8748 1835 DGQYFVTGSVDKS-CKLWDFREKKCVQTFF-G-HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIA--T------ 1903 (2004)
Q Consensus 1835 dg~~LaSGS~DGs-IrIWDlrs~k~I~tl~-~-h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~--t------ 1903 (2004)
+|++|++|+.||+ |++||+++++.+..+. + |...|.+++|+|++++|++++.||+|++||++.+.... .
T Consensus 206 ~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 206 KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 9999999999998 9999999999999998 5 99999999999999999999999999999997653211 1
Q ss_pred ------------E-cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1904 ------------Y-LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1904 ------------~-~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
+ ...........++|+++|+++++++.||.+++|++..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 0 0111122346789999999999999999999999743
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=277.16 Aligned_cols=255 Identities=22% Similarity=0.343 Sum_probs=215.7
Q ss_pred EEeeCCCCceEEEEEecC-CCEEEEeecCCeEEEEEcCCCCCC----CcceEEEEEecCccceeeeEEeCCC--cEEEee
Q psy8748 1728 QVIPLRSAWVMSVAFAQS-GNFVACGGMDNMCTVYDLNNRDST----GAAKVIRELLGYEGFLSSCRFIDDT--TLLTGS 1800 (2004)
Q Consensus 1728 ~ti~~Ht~~ItsLafSPd-g~~LaSGS~DGtIrVWDl~t~~~~----~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS 1800 (2004)
.....|.+.|++++|+|+ +.++++++.+|.|++|++...... ........+.+|...+.++.|++.+ .+++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344568999999999997 789999999999999999752111 1245566778899999999999654 689999
Q ss_pred cCCeEEEEECCCCcee------EEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeE
Q psy8748 1801 GDMKIVTWNLETGQRI------HEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREK---KCVQTFFGHEADVN 1870 (2004)
Q Consensus 1801 ~DGtI~IWDl~tg~~i------~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~---k~I~tl~~h~s~It 1870 (2004)
.||.|++||+..+... .....+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 9999999999874321 233568899999999999 7789999999999999999977 56777889999999
Q ss_pred EEEEeCCCC-EEEEEECCCeEEEEEccC-CceeEEEcCCCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC------
Q psy8748 1871 SVCFHPSGL-AFATGSEDKTARLFDIRA-DQQIATYLPPNKNSGFTSCAVSSSGR-YIFCGSDDNNVHVWDLLK------ 1941 (2004)
Q Consensus 1871 sIafSPdg~-~LaSgS~DGtIrIWDLrt-gk~i~t~~~~~~~s~ItsLafSPdG~-~LaSGSsDGsIrIWDL~t------ 1941 (2004)
+++|+|++. ++++|+.||.|++||+++ ...+..+. .|...|.+++|+|+++ ++++|+.||.|++||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~--~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE--CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee--cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 999999887 688999999999999998 44555553 4567899999999985 799999999999999976
Q ss_pred --------CeeeEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC
Q psy8748 1942 --------TTHNGVLSGHENRVTSISLSPNGM-ALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1942 --------ge~l~tL~gHs~~VtsLaFSPDg~-~LaSgS~DGtIrIWdlstg 1984 (2004)
.+.+..+.+|...|++++|+|++. ++++++.||.|++|++.++
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 366777889999999999999999 9999999999999999754
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=277.14 Aligned_cols=277 Identities=16% Similarity=0.108 Sum_probs=220.4
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC---CCCcceEE
Q psy8748 1699 HYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD---STGAAKVI 1775 (2004)
Q Consensus 1699 aFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~---~~~~~k~i 1775 (2004)
.+.+++.++++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|+.|++|+..... ........
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344678899999999999999999999888776 466888889888 9999999999999876421 00112222
Q ss_pred EE-EecCccceeeeEEeC--C-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEE
Q psy8748 1776 RE-LLGYEGFLSSCRFID--D-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1776 ~s-l~gh~~~Vssvafsd--d-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIW 1851 (2004)
.. ..+|...+.++.|++ + ..+++++.||.|++||+++++........+...+.+++|+|++.++++|+.||.|++|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 22 336678899999987 4 4688899999999999999988654445566689999999999999999999999999
Q ss_pred ECCCCeEE-EEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC-CCCCCe--EEEEEcCCCCEEE
Q psy8748 1852 DFREKKCV-QTFFG-HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP-NKNSGF--TSCAVSSSGRYIF 1926 (2004)
Q Consensus 1852 Dlrs~k~I-~tl~~-h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-~~~s~I--tsLafSPdG~~La 1926 (2004)
|+++++.+ ..+.. |..+|.+++|+|++.++++++ |+.|++||+++++....+... .+...+ .+++|+|+|++|+
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 99999877 77887 999999999999999999999 559999999988765444220 111222 4799999999999
Q ss_pred EEeC-CCeEEEEECCCCeeeEEEccCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCe
Q psy8748 1927 CGSD-DNNVHVWDLLKTTHNGVLSGHENRVTSISLSP---NGMALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1927 SGSs-DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSP---Dg~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
+|+. |+.|++|++.+....... .++..++|.+ ++..+++++.||.+.++-..+..
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~ 335 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDS 335 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECSSE
T ss_pred EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecCCe
Confidence 9998 999999999765544333 5678888988 88999999999999998766553
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-25 Score=270.64 Aligned_cols=284 Identities=15% Similarity=0.183 Sum_probs=237.5
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE-----eeCCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQV-----IPLRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~t-----i~~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
..+..| ..+.+++|+|++.++++++.|+.|++||+.+++.... +.+|...|.+++|++++.++++++.||.|++
T Consensus 117 ~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~ 195 (433)
T 3bws_A 117 SRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHV 195 (433)
T ss_dssp EEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEE
T ss_pred EEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEE
Confidence 334444 4566999999777888888899999999999988873 4578889999999999999999999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cE-EEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCE
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TL-LTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQY 1838 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~L-lSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~ 1838 (2004)
||++++ +....+..+...+.+++|.+++ .+ ++++.++.|++||+.+++....+ .....+.+++|+|++++
T Consensus 196 ~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 196 FDLKTL------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT--DKIGLPRGLLLSKDGKE 267 (433)
T ss_dssp EETTTC------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC--CCCSEEEEEEECTTSSE
T ss_pred EECCCc------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe--cCCCCceEEEEcCCCCE
Confidence 999754 4455666788899999999765 45 44557999999999998876544 23456999999999999
Q ss_pred EEEEE--------CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEE-EEEECCCeEEEEEccCCceeEEEcCCCC
Q psy8748 1839 FVTGS--------VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAF-ATGSEDKTARLFDIRADQQIATYLPPNK 1909 (2004)
Q Consensus 1839 LaSGS--------~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~L-aSgS~DGtIrIWDLrtgk~i~t~~~~~~ 1909 (2004)
+++++ .||.|++||+++++.+..+ .+...+.+++|+|+++.+ ++++.|+.|++||+.+++....+. +
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~ 343 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP---V 343 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---C
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---C
Confidence 99988 4889999999998876665 556688999999999755 566889999999999988877763 3
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---------------CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEEC-C
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGSD---------------DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSW-D 1973 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGSs---------------DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~-D 1973 (2004)
...+.+++|+|+|+++++++. ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |
T Consensus 344 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d 422 (433)
T 3bws_A 344 FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLD 422 (433)
T ss_dssp SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTT
T ss_pred CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCC
Confidence 467899999999999998876 57999999999999988876 457999999999999998875 9
Q ss_pred CeEEEEECCC
Q psy8748 1974 QFVKVWQESN 1983 (2004)
Q Consensus 1974 GtIrIWdlst 1983 (2004)
|.|++|++++
T Consensus 423 ~~i~v~~~~~ 432 (433)
T 3bws_A 423 HQIRVYRRDG 432 (433)
T ss_dssp TEEEEEEETT
T ss_pred CeEEEEEecC
Confidence 9999999874
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=311.18 Aligned_cols=253 Identities=19% Similarity=0.264 Sum_probs=214.9
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..+|++.|++++|+|+|++||+ |+.||+|+|||+.. ..
T Consensus 5 l~gH~~~V~~l~~s~dg~~lat-g~~dg~I~vwd~~~-------------~~---------------------------- 42 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLAT-CSSDKTIKIFEVEG-------------ET---------------------------- 42 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEE-EETTTEEEEEEEET-------------TE----------------------------
T ss_pred cccCcceeEEEEECCCCCeEEE-EECCCcEEEEecCC-------------CC----------------------------
Confidence 4569999999999999999999 99999999999864 00
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCC--CCEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGD--SRHCV 1708 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPD--G~~LA 1708 (2004)
......+.+|.+.|++++|+++ +++|+
T Consensus 43 ---------------------------------------------------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 43 ---------------------------------------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILA 71 (753)
T ss_dssp ---------------------------------------------------EEEEEEECCCSSCEEEEEECCTTSCSEEE
T ss_pred ---------------------------------------------------CccceeccCCcCceEEEEecCCCCCCEEE
Confidence 0123456679999999999988 99999
Q ss_pred EEeCCCeEEEEECCCCc--eEEEeeCCCCceEEEEEecC--CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1709 SGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQS--GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPd--g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
+|+.||.|++||+.+++ ....+..|...|.+++|+|+ ++.+++|+.||.|++||+..+.. .......+|...
T Consensus 72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~----~~~~~~~~~~~~ 147 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIG 147 (753)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC----CCCEEEECCSSC
T ss_pred EEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC----cceeEeecCCCc
Confidence 99999999999999987 67778889999999999999 99999999999999999986532 233456788999
Q ss_pred eeeeEEeC--------------CCcEEEeecCCeEEEEECCCCce---eEEeeccccCCeEEEEECCC---CCEEEEEEC
Q psy8748 1785 LSSCRFID--------------DTTLLTGSGDMKIVTWNLETGQR---IHEVAQAHIGDVVSISLSPD---GQYFVTGSV 1844 (2004)
Q Consensus 1785 Vssvafsd--------------d~~LlSgS~DGtI~IWDl~tg~~---i~~il~~h~~~ItsLafSPd---g~~LaSGS~ 1844 (2004)
+.++.|.+ +..+++|+.||.|++||++++.. ......+|.+.|++++|+|+ ++++++|+.
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 99999987 56799999999999999988752 23445789999999999999 899999999
Q ss_pred CCeEEEEECCCCe-----EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce
Q psy8748 1845 DKSCKLWDFREKK-----CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ 1900 (2004)
Q Consensus 1845 DGsIrIWDlrs~k-----~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~ 1900 (2004)
||.|++||++++. .......|...|.+++|+|+|+++++|+.||.|++||+..+..
T Consensus 228 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 9999999998764 2333345888999999999999999999999999999986543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=303.73 Aligned_cols=253 Identities=20% Similarity=0.224 Sum_probs=216.4
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECC--CCceEEEeeCCCCceEEEEEecC--CCEEEEeecCCeEEE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTW--TGNKTQVIPLRSAWVMSVAFAQS--GNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~--Tgk~l~ti~~Ht~~ItsLafSPd--g~~LaSGS~DGtIrV 1760 (2004)
...+.||.+.|++++|+|+|+++++|+.||.|+|||+. +++....+.+|.+.|.+++|+++ ++++++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35688999999999999999999999999999999988 55777888999999999999988 999999999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeC---CCcEEEeecCCeEEEEECCCCcee-EEeeccccCCeEEEEECC--
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFID---DTTLLTGSGDMKIVTWNLETGQRI-HEVAQAHIGDVVSISLSP-- 1834 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd---d~~LlSgS~DGtI~IWDl~tg~~i-~~il~~h~~~ItsLafSP-- 1834 (2004)
||+.++ .........+|...+.++.|++ +..+++|+.||.|++||+.++... .....+|...|.+++|+|
T Consensus 82 wd~~~~----~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 82 WKEENG----RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEETT----EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred EECCCC----cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence 999864 2346677888999999999996 467999999999999999887432 234568899999999999
Q ss_pred -----------CCCEEEEEECCCeEEEEECCCC----eEEEEEecCCCCeEEEEEeCC---CCEEEEEECCCeEEEEEcc
Q psy8748 1835 -----------DGQYFVTGSVDKSCKLWDFREK----KCVQTFFGHEADVNSVCFHPS---GLAFATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1835 -----------dg~~LaSGS~DGsIrIWDlrs~----k~I~tl~~h~s~ItsIafSPd---g~~LaSgS~DGtIrIWDLr 1896 (2004)
+++++++|+.||.|++||++++ .....+.+|...|.+++|+|+ ++++++|+.||.|++||++
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 5899999999999999999876 566778899999999999999 8999999999999999998
Q ss_pred CCcee---EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1897 ADQQI---ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1897 tgk~i---~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
++... .......+...+++++|+|+|+++++|+.||.|++||+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 86422 1222344667899999999999999999999999999874
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-24 Score=258.03 Aligned_cols=272 Identities=17% Similarity=0.198 Sum_probs=225.9
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEE-EEeecCCeEEEEEcCCCCCCCcceEEEEEecCcc
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFV-ACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG 1783 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~L-aSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~ 1783 (2004)
..+++++.|+.|++||+.+++....+..|.. +.+++|+|+++++ ++++.|+.|++||+.++ +....+..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~------~~~~~~~~~~- 74 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATN------NVIATVPAGS- 74 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTT------EEEEEEECSS-
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCC------eEEEEEECCC-
Confidence 4678889999999999999999998887755 8999999999976 67778999999999754 3444444444
Q ss_pred ceeeeEEeCCCc-EE-EeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEE-EEEECCCeEEEEECCCCeEEE
Q psy8748 1784 FLSSCRFIDDTT-LL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYF-VTGSVDKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1784 ~Vssvafsdd~~-Ll-SgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~L-aSGS~DGsIrIWDlrs~k~I~ 1860 (2004)
.+.+++|++++. ++ +++.++.|++||+.+++..... .+...+.+++|+|+++.+ ++++.|+.|++||+.+++.+.
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE--eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 888999986654 54 4556799999999999877554 344578999999999977 677789999999999999888
Q ss_pred EEecCCCCeEEEEEeCCCCEE-EEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe---CCCeEEE
Q psy8748 1861 TFFGHEADVNSVCFHPSGLAF-ATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS---DDNNVHV 1936 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg~~L-aSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS---sDGsIrI 1936 (2004)
.+..+ ..+.+++|+|+++++ ++++.+|.|++||+++++....+. +...+.+++|+|+|+++++++ .++.|++
T Consensus 153 ~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~ 228 (391)
T 1l0q_A 153 TVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228 (391)
T ss_dssp EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred EEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCCcEEE
Confidence 87665 557999999999887 567788999999999998877764 235689999999999999888 6899999
Q ss_pred EECCCCeeeEEEccCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1937 WDLLKTTHNGVLSGHENRVTSISLSPNGMAL-VTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1937 WDL~tge~l~tL~gHs~~VtsLaFSPDg~~L-aSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
||+.+++.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++....+.
T Consensus 229 ~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp EETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 9999999988888765 58999999999987 677889999999999987655554
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-24 Score=256.08 Aligned_cols=279 Identities=20% Similarity=0.160 Sum_probs=221.5
Q ss_pred cceeEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEE-eecCCeEEEEEcCCCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVAC-GGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaS-GS~DGtIrVWDl~t~~~~~ 1770 (2004)
..+.+++|+|+|+++ ++++.|+.|++||+.+++....+..+. .+.+++|+|+++++++ ++.++.|++||+.++
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~---- 106 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN---- 106 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT----
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC----
Confidence 347899999999987 677789999999999999998888666 8999999999998755 456799999999764
Q ss_pred cceEEEEEecCccceeeeEEeCCCc-E-EEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEE-EEEECCCe
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDTT-L-LTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYF-VTGSVDKS 1847 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~~-L-lSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~L-aSGS~DGs 1847 (2004)
+....+.. ...+.++.|++++. + ++++.++.|++||+.+++....+. ....+.+++|+|+++++ ++++.+|.
T Consensus 107 --~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~ 181 (391)
T 1l0q_A 107 --TVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--VGRSPKGIAVTPDGTKVYVANFDSMS 181 (391)
T ss_dssp --EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTE
T ss_pred --eEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe--cCCCcceEEECCCCCEEEEEeCCCCE
Confidence 33333433 44678889986654 5 677889999999999988775542 23567999999999987 56678899
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE---CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS---EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1848 IrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS---~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
|++||+++++.+..+. +...+.+++|+|+++++++++ .++.|++||+.+++.+..+... ..+.+++|+|+|++
T Consensus 182 v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~ 257 (391)
T 1l0q_A 182 ISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVTPDGKK 257 (391)
T ss_dssp EEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC---SSEEEEEECTTSSE
T ss_pred EEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC---CCccEEEEccCCCE
Confidence 9999999998877764 566889999999999999888 6899999999999887777432 35789999999998
Q ss_pred E-EEEeCCCeEEEEECCCCeeeEEEccCCCCeE---EEE------------EcCCC----------CEEEEEECCCeEEE
Q psy8748 1925 I-FCGSDDNNVHVWDLLKTTHNGVLSGHENRVT---SIS------------LSPNG----------MALVTSSWDQFVKV 1978 (2004)
Q Consensus 1925 L-aSGSsDGsIrIWDL~tge~l~tL~gHs~~Vt---sLa------------FSPDg----------~~LaSgS~DGtIrI 1978 (2004)
+ ++++.|+.|++||+.+++....+..|..+.. .+. |+.+. ..+...+.|..+++
T Consensus 258 l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (391)
T 1l0q_A 258 VYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWK 337 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEE
T ss_pred EEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEE
Confidence 8 5667899999999999999988876654421 112 22211 34566677899999
Q ss_pred EECCCCe
Q psy8748 1979 WQESNTI 1985 (2004)
Q Consensus 1979 Wdlstg~ 1985 (2004)
|++.++.
T Consensus 338 W~~~~g~ 344 (391)
T 1l0q_A 338 WDFGDGS 344 (391)
T ss_dssp EECSSSC
T ss_pred EECCCCc
Confidence 9998775
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-25 Score=270.40 Aligned_cols=308 Identities=9% Similarity=0.063 Sum_probs=222.5
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc---eEEEeeCCCCceEEEEEe---cCCCEEEEeecCCeE-EEEEcC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN---KTQVIPLRSAWVMSVAFA---QSGNFVACGGMDNMC-TVYDLN 1764 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk---~l~ti~~Ht~~ItsLafS---Pdg~~LaSGS~DGtI-rVWDl~ 1764 (2004)
..++.+++|+++|++|+++ .++.|++||+.+|+ .+..+..+........+. .++..+.....++.- +...-.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3588999999999976666 57899999999999 777776654422222221 112222221111100 000000
Q ss_pred C--CCCCCcceEEEEEecCccceeeeEEeCCCc-E-EEeecCCeEEEEECC--CCceeEEee-ccccCCeEEEEECCCCC
Q psy8748 1765 N--RDSTGAAKVIRELLGYEGFLSSCRFIDDTT-L-LTGSGDMKIVTWNLE--TGQRIHEVA-QAHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1765 t--~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-L-lSgS~DGtI~IWDl~--tg~~i~~il-~~h~~~ItsLafSPdg~ 1837 (2004)
. ..............++.+.|.+++|++++. + ++++.||.|++||+. +++....+. ..+...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 0 000001112234457788999999997654 3 678899999999999 777665443 25678899999999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEE----EEecCCCCeEEEEEeCC---CCEEEEEECCCeEEEEEccCCceeEEEcCCCCC
Q psy8748 1838 YFVTGSVDKSCKLWDFREKKCVQ----TFFGHEADVNSVCFHPS---GLAFATGSEDKTARLFDIRADQQIATYLPPNKN 1910 (2004)
Q Consensus 1838 ~LaSGS~DGsIrIWDlrs~k~I~----tl~~h~s~ItsIafSPd---g~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~ 1910 (2004)
+|++|+.||.|++|++.++.... .+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++.+..+. ..|.
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~h~ 241 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL-FGHK 241 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC-CCCS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee-cCCC
Confidence 99999999999999998776443 67789999999999999 9999999999999999999998877753 3566
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc-------------------------CCCCeEEEEEcCCCC
Q psy8748 1911 SGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG-------------------------HENRVTSISLSPNGM 1965 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g-------------------------Hs~~VtsLaFSPDg~ 1965 (2004)
..|.+++|+ +|++|++|+.||.|++||+.+++++..+.. +...|.+++|+|+++
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 889999999 999999999999999999999998888753 345799999999999
Q ss_pred EEEEEE-CCCeEEEEEC--CCCeEEEEEEeecCCCCccccc
Q psy8748 1966 ALVTSS-WDQFVKVWQE--SNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1966 ~LaSgS-~DGtIrIWdl--stg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
+|++++ .|+.|++|++ .++..++.++.+..+ +.|.++
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~ 360 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISL 360 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEE
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEE
Confidence 999999 8999999999 665445666666666 556554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=273.91 Aligned_cols=256 Identities=16% Similarity=0.298 Sum_probs=215.7
Q ss_pred ccccccccceeEEEEeCC-CCEEEEEeCCCeEEEEECCC----------CceEEEeeCCCCceEEEEEecCCC-EEEEee
Q psy8748 1686 KSLKGHINKVNSVHYSGD-SRHCVSGSLDGKLIIWDTWT----------GNKTQVIPLRSAWVMSVAFAQSGN-FVACGG 1753 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPD-G~~LASGS~DGtIrVWDl~T----------gk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS 1753 (2004)
....+|.+.|++++|+|+ +.++++|+.||.|++||+.+ ......+.+|...|.+++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 456689999999999997 67999999999999999986 677888899999999999999988 999999
Q ss_pred cCCeEEEEEcCCCCCC-CcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCCCc--eeEEeeccccCCeE
Q psy8748 1754 MDNMCTVYDLNNRDST-GAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLETGQ--RIHEVAQAHIGDVV 1828 (2004)
Q Consensus 1754 ~DGtIrVWDl~t~~~~-~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~--~i~~il~~h~~~It 1828 (2004)
.||.|++|++...... ........+.+|...+.++.|++ +..+++++.||.|++||++++. ........|...|.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 9999999999864321 11222456678999999999986 4468889999999999999873 22233468899999
Q ss_pred EEEECCCCC-EEEEEECCCeEEEEECCC-CeEEEEEecCCCCeEEEEEeCCCC-EEEEEECCCeEEEEEccCCce-----
Q psy8748 1829 SISLSPDGQ-YFVTGSVDKSCKLWDFRE-KKCVQTFFGHEADVNSVCFHPSGL-AFATGSEDKTARLFDIRADQQ----- 1900 (2004)
Q Consensus 1829 sLafSPdg~-~LaSGS~DGsIrIWDlrs-~k~I~tl~~h~s~ItsIafSPdg~-~LaSgS~DGtIrIWDLrtgk~----- 1900 (2004)
+++|+|++. ++++|+.||.|++||++. ...+..+..|...|.+++|+|++. ++++++.||.|++||+.....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 788999999999999997 567888889999999999999985 699999999999999987221
Q ss_pred -------eEEEcCCCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q psy8748 1901 -------IATYLPPNKNSGFTSCAVSSSGR-YIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1901 -------i~t~~~~~~~s~ItsLafSPdG~-~LaSGSsDGsIrIWDL~t 1941 (2004)
...+....|...|.+++|+|+++ ++++++.||.|++|++..
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 22233356677899999999999 899999999999999864
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-24 Score=258.80 Aligned_cols=241 Identities=15% Similarity=0.194 Sum_probs=202.4
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEE-EeecCCeEEEEEcCCC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVA-CGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~La-SGS~DGtIrVWDl~t~ 1766 (2004)
+.+|.+.|++++|+++++++++++.||.|++||+.+++....+..|...+.+++|+|+++.++ +++.+|.|++||+.++
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 346889999999999999999999999999999999999999999999999999999999885 4557999999999754
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCC-cEEEee--------cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGS--------GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS--------~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~ 1837 (2004)
+....+.. ...+.++.|.+++ .+++++ .||.|++||+.+++..... .+...+.+++|+|+++
T Consensus 245 ------~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 245 ------LEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--GPPGNKRHIVSGNTEN 315 (433)
T ss_dssp ------EEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--EEEECEEEEEECSSTT
T ss_pred ------cEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--cCCCCcceEEECCCCC
Confidence 33333333 4458888998665 566766 4889999999998776544 4566889999999997
Q ss_pred EE-EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---------------CCeEEEEEccCCcee
Q psy8748 1838 YF-VTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE---------------DKTARLFDIRADQQI 1901 (2004)
Q Consensus 1838 ~L-aSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~---------------DGtIrIWDLrtgk~i 1901 (2004)
.+ ++++.|+.|++||+.+++.+..+. +...+.+++|+|+|+++++++. ||.|++||..+++..
T Consensus 316 ~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 55 556889999999999998887774 6788999999999999988886 579999999999888
Q ss_pred EEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q psy8748 1902 ATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLK 1941 (2004)
Q Consensus 1902 ~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~t 1941 (2004)
..+.. ...+.+++|+|+|+++++++. ||.|++|++..
T Consensus 395 ~~~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 395 EFWEA---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEC---SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEecC---CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 87743 356899999999999998875 99999999853
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=282.92 Aligned_cols=262 Identities=11% Similarity=0.086 Sum_probs=214.2
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~ 1769 (2004)
.-..+|.+++|+|||+++|+++.|++|+ |...++.+ .+|...|.+++|+|+| .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence 3457999999999999999999999999 76666544 7999999999999999 45555555543211
Q ss_pred CcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccC-----CeEEEEECCCCCEEEEEE
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIG-----DVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~-----~ItsLafSPdg~~LaSGS 1843 (2004)
.... .+...|.+++|++++ .+++++.||.|++||... .+ .... |.. .+.+++|+|||++|++|+
T Consensus 79 -----~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l-~~l~-~~~~~~~~sv~svafSPDG~~LAsgs 148 (588)
T 2j04_A 79 -----LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--ML-TNLD-SKGNLSSRTYHCFEWNPIESSIVVGN 148 (588)
T ss_dssp -----SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EE-EECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred -----Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--ee-eecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence 1111 347889999999665 499999999999999544 33 3334 554 599999999999999999
Q ss_pred CCCeEEEEECCCCe-------EEEEE----ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCcee---EEEcCCCC
Q psy8748 1844 VDKSCKLWDFREKK-------CVQTF----FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQI---ATYLPPNK 1909 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~k-------~I~tl----~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i---~t~~~~~~ 1909 (2004)
.||+|++||+.++. .+.++ .+|...|.+++|+|+| +++++.|+.|++||+.++... .++. ..|
T Consensus 149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h 225 (588)
T 2j04_A 149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-NAS 225 (588)
T ss_dssp TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE-CCC
T ss_pred CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec-ccc
Confidence 99999999999875 35666 5677899999999999 888899999999999887742 3332 245
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEE--cCCCCEEEEEECCCeEEEEECC
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISL--SPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF--SPDg~~LaSgS~DGtIrIWdls 1982 (2004)
...|.+++|+ |+++++++ +|+|++||+.+++......+|.+.|.+++| +|++..+++++.||+ ++|..+
T Consensus 226 ~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 226 RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 5789999999 68999887 699999999988875555489999999999 999999999999999 999987
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-25 Score=268.72 Aligned_cols=261 Identities=11% Similarity=0.049 Sum_probs=184.8
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-----EeeCCCCceEEEEEec--------CCCEEEEeecC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQ-----VIPLRSAWVMSVAFAQ--------SGNFVACGGMD 1755 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~-----ti~~Ht~~ItsLafSP--------dg~~LaSGS~D 1755 (2004)
.+|...+....+++++.++++|+.|++|++||..++.... .+.+|.+.|.+++|+| ++++|++|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3466666677777889999999999999999998886543 2468999999999998 78999999999
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEe--------------
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEV-------------- 1819 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~i-------------- 1819 (2004)
++|++||+.++ .......+|...+.+++|++++ .+++++.||.|++||+.+++.....
T Consensus 166 ~tv~~Wd~~~~------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~ 239 (393)
T 4gq1_A 166 CTLIIWRLTDE------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL 239 (393)
T ss_dssp SEEEEEEEETT------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE
T ss_pred CeEEEEECCCC------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec
Confidence 99999999753 4556677888999999999754 5899999999999999887643221
Q ss_pred ----------eccccCCeEEEEEC-CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC
Q psy8748 1820 ----------AQAHIGDVVSISLS-PDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK 1888 (2004)
Q Consensus 1820 ----------l~~h~~~ItsLafS-Pdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG 1888 (2004)
..+|...+.++.|+ ++++.+++++.|+.+++||+..+.....+..|...+..+.+.|+...+...
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---- 315 (393)
T 4gq1_A 240 NTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF---- 315 (393)
T ss_dssp ESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS----
T ss_pred ccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc----
Confidence 23567778899886 799999999999999999999888777777777777777777664322110
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCE
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSS--SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMA 1966 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP--dG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~ 1966 (2004)
...+. ..+++ ++.++++|+.||.|++||+.+++......+|..+|.+++|+|||++
T Consensus 316 ---------------------~~~~~-~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~ 373 (393)
T 4gq1_A 316 ---------------------PSLLG-ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSH 373 (393)
T ss_dssp ---------------------CCSSC-CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSE
T ss_pred ---------------------Cccee-EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCE
Confidence 01112 23333 4556778889999999999999999888899999999999999999
Q ss_pred EEEEECCCeEEEEECC
Q psy8748 1967 LVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1967 LaSgS~DGtIrIWdls 1982 (2004)
||+++.|| +.+|++.
T Consensus 374 LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 374 LAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEESSE-EEEEEEG
T ss_pred EEEEeCCC-eEEEEEe
Confidence 99999766 6677654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-23 Score=263.58 Aligned_cols=287 Identities=14% Similarity=0.122 Sum_probs=226.6
Q ss_pred eeEEEEeCCCCEEEEEeCCCeEEEEEC--CCCceEEEeeCCCCceEEEEEec----CCCEEEEeec-CCeEEEEEcCCCC
Q psy8748 1695 VNSVHYSGDSRHCVSGSLDGKLIIWDT--WTGNKTQVIPLRSAWVMSVAFAQ----SGNFVACGGM-DNMCTVYDLNNRD 1767 (2004)
Q Consensus 1695 VtsLaFSPDG~~LASGS~DGtIrVWDl--~Tgk~l~ti~~Ht~~ItsLafSP----dg~~LaSGS~-DGtIrVWDl~t~~ 1767 (2004)
+.+++|+|||+++++++.|++|++||+ .+++.+..+.. ...+..++|+| +|+++++++. ++.|.+||..+.+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 779999999999999999999999999 88988888884 55689999999 9999998884 8999999987643
Q ss_pred CCCcceEEEEEec----------C-ccceeeeEEeCC-C-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1768 STGAAKVIRELLG----------Y-EGFLSSCRFIDD-T-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1768 ~~~~~k~i~sl~g----------h-~~~Vssvafsdd-~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
....+.. | ...+..+.++++ . .+++...+|.|.+||..+++.+......+...+.++.|+|
T Consensus 260 ------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp 333 (543)
T 1nir_A 260 ------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS 333 (543)
T ss_dssp ------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT
T ss_pred ------cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC
Confidence 3333322 1 225777888753 3 3566778899999999887654322224566788999999
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCeEEEEEec----CCCCeEEEEEeCC-CCEEEEEE-CCCeEEEEEccC-------Cce
Q psy8748 1835 DGQYFVTGS-VDKSCKLWDFREKKCVQTFFG----HEADVNSVCFHPS-GLAFATGS-EDKTARLFDIRA-------DQQ 1900 (2004)
Q Consensus 1835 dg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~----h~s~ItsIafSPd-g~~LaSgS-~DGtIrIWDLrt-------gk~ 1900 (2004)
+|+++++++ .+++|.+||..+++.+..+.. |.+....+ ++|+ +..++++. .|++|.+||+.+ ++.
T Consensus 334 dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~ 412 (543)
T 1nir_A 334 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK 412 (543)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE
Confidence 999887665 588999999999998888764 44434333 4777 55566664 579999999998 788
Q ss_pred eEEEcCCCCCCCeEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCeee-EEE--------ccCCCCeEEEEEcCCC
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSSGRYIFCGS-------DDNNVHVWDLLKTTHN-GVL--------SGHENRVTSISLSPNG 1964 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPdG~~LaSGS-------sDGsIrIWDL~tge~l-~tL--------~gHs~~VtsLaFSPDg 1964 (2004)
+.++.. +...+..++++|+|++|++++ .+++|.+||+.+++.. ..+ ..+...+..++|+|+|
T Consensus 413 v~~l~~--~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 413 VAELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp EEEEEC--SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred EEEEEc--CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence 888854 335678899999999999987 2679999999998877 443 3567889999999999
Q ss_pred CEEEEEE-----CCCeEEEEECCCCeEEEEEE
Q psy8748 1965 MALVTSS-----WDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1965 ~~LaSgS-----~DGtIrIWdlstg~l~k~Ik 1991 (2004)
+.++++. .|+.|.|||..++++.+.++
T Consensus 491 ~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 491 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 9988763 37999999999998877776
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=257.00 Aligned_cols=237 Identities=11% Similarity=0.174 Sum_probs=189.6
Q ss_pred EEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECC---------
Q psy8748 1741 AFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLE--------- 1811 (2004)
Q Consensus 1741 afSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~--------- 1811 (2004)
.+.+++..+++|+.||.|++||+.+++. ...+. ...+.++.+.+. +++++.|+.|++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~------~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~ 112 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKT------ITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSK 112 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSC------EEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETT
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcE------EEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecC
Confidence 3445788999999999999999987542 22222 345666667666 9999999999999665
Q ss_pred CCceeEEeeccccCCeEEEEECC--CCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEECCC
Q psy8748 1812 TGQRIHEVAQAHIGDVVSISLSP--DGQYFVTGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHPSGLAFATGSEDK 1888 (2004)
Q Consensus 1812 tg~~i~~il~~h~~~ItsLafSP--dg~~LaSGS~DGsIrIWDlrs~k~I~tl~-~h~s~ItsIafSPdg~~LaSgS~DG 1888 (2004)
+++.+.....+|.+.|.+++|+| +++++++|+.||.|++||+++++.+.... .+...+.+++|+|++.++++|+.||
T Consensus 113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg 192 (343)
T 3lrv_A 113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG 192 (343)
T ss_dssp TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence 55555555557778999999999 99999999999999999999998876664 4456899999999999999999999
Q ss_pred eEEEEEccCCcee-EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc---CCCCeE--EEEEcC
Q psy8748 1889 TARLFDIRADQQI-ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG---HENRVT--SISLSP 1962 (2004)
Q Consensus 1889 tIrIWDLrtgk~i-~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g---Hs~~Vt--sLaFSP 1962 (2004)
.|++||+++++.. ..+.. .|...|++++|+|+|.+|++|+ |+.|++||+++++....+.. |...+. +++|+|
T Consensus 193 ~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3lrv_A 193 ILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD 270 (343)
T ss_dssp CEEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT
T ss_pred EEEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC
Confidence 9999999999887 55532 3678999999999999999999 55999999998877655443 444444 699999
Q ss_pred CCCEEEEEEC-CCeEEEEECCCC-eEEEE
Q psy8748 1963 NGMALVTSSW-DQFVKVWQESNT-IVWKV 1989 (2004)
Q Consensus 1963 Dg~~LaSgS~-DGtIrIWdlstg-~l~k~ 1989 (2004)
+|++|++++. |+.|++|+++++ +.|..
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred CCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 9999999998 999999999644 34554
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-22 Score=243.80 Aligned_cols=281 Identities=12% Similarity=0.173 Sum_probs=199.0
Q ss_pred ceeEEEEeCCCC---EEEEEeCCCeEEEEECCCC---ceEEEeeCCCCceEEEEEecCCCEEEEe--ecCCeEEEEEcCC
Q psy8748 1694 KVNSVHYSGDSR---HCVSGSLDGKLIIWDTWTG---NKTQVIPLRSAWVMSVAFAQSGNFVACG--GMDNMCTVYDLNN 1765 (2004)
Q Consensus 1694 ~VtsLaFSPDG~---~LASGS~DGtIrVWDl~Tg---k~l~ti~~Ht~~ItsLafSPdg~~LaSG--S~DGtIrVWDl~t 1765 (2004)
.+.++.|-.-|- .+++++. ..|++|+..++ +.+++.+.|..+|..+.+.||...|++. +.=..-.++.+--
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 356676754333 6788875 68999999999 8899999999999999998865433222 1111112222211
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCCCcEEEee---cCCeEEEEECCC-CceeEEeeccccCCeEEEEECC---CCCE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGS---GDMKIVTWNLET-GQRIHEVAQAHIGDVVSISLSP---DGQY 1838 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS---~DGtI~IWDl~t-g~~i~~il~~h~~~ItsLafSP---dg~~ 1838 (2004)
..............++...+..+ +++.++.++ .|+.|++|++.. ++.+ .....|...++.++|++ ++.+
T Consensus 120 spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~-~s~~~~~~~v~~l~fs~~~g~~~~ 195 (356)
T 2w18_A 120 SSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGK-ENQFLMPPEETILTFAEVQGMQEA 195 (356)
T ss_dssp ------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEE-EEEEECCCSSCEEEEEEEETSTTE
T ss_pred CCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCcee-eeeccCCCceeeEEeeccCCCCce
Confidence 10000111111112233333332 456666654 499999999955 6554 44458888999999999 7799
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecCCC---CeEEEEEeCCCCEE------------EEEECCCeEEEEEccCCceeEE
Q psy8748 1839 FVTGSVDKSCKLWDFREKKCVQTFFGHEA---DVNSVCFHPSGLAF------------ATGSEDKTARLFDIRADQQIAT 1903 (2004)
Q Consensus 1839 LaSGS~DGsIrIWDlrs~k~I~tl~~h~s---~ItsIafSPdg~~L------------aSgS~DGtIrIWDLrtgk~i~t 1903 (2004)
|++|+.|++|+|||+++++.++++.+|.. .+.+++|+|+|.++ ++|+.|++|++||..+++.+..
T Consensus 196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v 275 (356)
T 2w18_A 196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV 275 (356)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEE
T ss_pred EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE
Confidence 99999999999999999999999986543 57788999999876 5678899999999999988765
Q ss_pred Ec---CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeE-EEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1904 YL---PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVT-SISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1904 ~~---~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~Vt-sLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
+. ..++...+.+..+ ++.++++|+.||+|+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|+||
T Consensus 276 ~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 276 MLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp EEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred EEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 42 2344444444444 488999999999999999999999999999987655 68999999999999999999999
Q ss_pred EC
Q psy8748 1980 QE 1981 (2004)
Q Consensus 1980 dl 1981 (2004)
|+
T Consensus 354 d~ 355 (356)
T 2w18_A 354 HY 355 (356)
T ss_dssp EE
T ss_pred cC
Confidence 85
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=257.21 Aligned_cols=210 Identities=19% Similarity=0.182 Sum_probs=155.6
Q ss_pred cccccccccceeEEEEeC--------CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCC-EEEEeecC
Q psy8748 1685 KKSLKGHINKVNSVHYSG--------DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN-FVACGGMD 1755 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSP--------DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~D 1755 (2004)
...+.||.+.|++++|+| |+++||+|+.|++|+|||+.++.....+..|...|.+++|+|++. +|++|+.|
T Consensus 129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 208 (393)
T 4gq1_A 129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN 208 (393)
T ss_dssp ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC
Confidence 345778999999999998 889999999999999999999988888888999999999999874 89999999
Q ss_pred CeEEEEEcCCCCCCCcce-------------------EEEEEecCccceeeeEEe--CCCcEEEeecCCeEEEEECCCCc
Q psy8748 1756 NMCTVYDLNNRDSTGAAK-------------------VIRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQ 1814 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k-------------------~i~sl~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~ 1814 (2004)
|.|++||+.++....... ......+|...+.++.|. ++..+++++.|+.+++||+..+.
T Consensus 209 ~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~ 288 (393)
T 4gq1_A 209 GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN 288 (393)
T ss_dssp SEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC
Confidence 999999998754221110 111234577788888886 45679999999999999998766
Q ss_pred eeEEeeccccCCeEE------------------EEECC--CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEE
Q psy8748 1815 RIHEVAQAHIGDVVS------------------ISLSP--DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCF 1874 (2004)
Q Consensus 1815 ~i~~il~~h~~~Its------------------LafSP--dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIaf 1874 (2004)
....+ ..|...+.. ..+++ ++.++++|+.||.|++||..+++.......|..+|.+++|
T Consensus 289 ~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf 367 (393)
T 4gq1_A 289 DYNEI-SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCW 367 (393)
T ss_dssp ----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEE
T ss_pred CCceE-eeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEE
Confidence 54322 222222222 23333 3346677888999999999999888888899999999999
Q ss_pred eCCCCEEEEEECCCeEEEEEcc
Q psy8748 1875 HPSGLAFATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1875 SPdg~~LaSgS~DGtIrIWDLr 1896 (2004)
+|+|++|++++.+| +.+|.+.
T Consensus 368 spdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 368 HQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CTTSSEEEEEESSE-EEEEEEG
T ss_pred cCCCCEEEEEeCCC-eEEEEEe
Confidence 99999999998665 6677654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=255.04 Aligned_cols=279 Identities=12% Similarity=0.077 Sum_probs=209.0
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
..|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++|++.++.
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~--- 183 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR--- 183 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE---
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC---
Confidence 46889999999999999986 999999998883 4445667788899999999999999887 4689999997642
Q ss_pred cceEEEEEecCcc----------------ceeeeEEeCCC-cEEEeecCC------------------------------
Q psy8748 1771 AAKVIRELLGYEG----------------FLSSCRFIDDT-TLLTGSGDM------------------------------ 1803 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~----------------~Vssvafsdd~-~LlSgS~DG------------------------------ 1803 (2004)
.......+.. .+..+.|++++ .+++++.|+
T Consensus 184 ---~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 184 ---QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp ---EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred ---EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 1111111211 14678898665 477776654
Q ss_pred ---eEEEEECCC-CceeEEeec-cccCCeEEEEECCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEecCCC----Ce
Q psy8748 1804 ---KIVTWNLET-GQRIHEVAQ-AHIGDVVSISLSPDGQYFVTGSV-----DKSCKLWDFREKKCVQTFFGHEA----DV 1869 (2004)
Q Consensus 1804 ---tI~IWDl~t-g~~i~~il~-~h~~~ItsLafSPdg~~LaSGS~-----DGsIrIWDlrs~k~I~tl~~h~s----~I 1869 (2004)
.|++||+.+ ++....... .+...+.+++| |||++|++++. ++.|++||+.+++....+..+.. .+
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence 899999988 775432222 46678999999 99999987764 56799999999987776655543 45
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEEcc-CCceeEEEcCCCCCCCeEEE-EEcCCCCEEEE-EeCCC--eEEEEECCC-Ce
Q psy8748 1870 NSVCFHPSGLAFATGSEDKTARLFDIR-ADQQIATYLPPNKNSGFTSC-AVSSSGRYIFC-GSDDN--NVHVWDLLK-TT 1943 (2004)
Q Consensus 1870 tsIafSPdg~~LaSgS~DGtIrIWDLr-tgk~i~t~~~~~~~s~ItsL-afSPdG~~LaS-GSsDG--sIrIWDL~t-ge 1943 (2004)
.+++|+|||+++++++.||.+++|.+. +++ ...+ ..+...+..+ .|+|+|+.|+. ++.++ .+++|++.. +.
T Consensus 340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l--~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL--THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp SCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES--CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred CceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee--eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 689999999999999999988888775 344 4444 2344567776 59999997765 44455 899999864 55
Q ss_pred eeEEEccCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCC
Q psy8748 1944 HNGVLSGHENRVTSISLSPNGMALVTSSWD----QFVKVWQESNT 1984 (2004)
Q Consensus 1944 ~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D----GtIrIWdlstg 1984 (2004)
....+.. ...+..++|+|||++|+....+ +.+.+|+..++
T Consensus 417 ~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 417 QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 5666665 6678999999999998876544 57899998664
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-21 Score=260.31 Aligned_cols=276 Identities=14% Similarity=0.129 Sum_probs=211.8
Q ss_pred ceeEEEEeCCCCEEEEEeC------------CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1694 KVNSVHYSGDSRHCVSGSL------------DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~------------DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
....++|+| | ++++++. +....+|....+.....+..|...+.++.|+++ ..+++++.+|.+.+|
T Consensus 153 ~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~ 229 (1045)
T 1k32_A 153 PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIY 229 (1045)
T ss_dssp SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEE
T ss_pred CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEE
Confidence 345788999 8 8888753 234566654343555566889999999999988 677788888999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeec----------cccCCeEEEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ----------AHIGDVVSIS 1831 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~----------~h~~~ItsLa 1831 (2004)
.++... .....+..+. .+....|++++..++.+.++.|++||..... +..+.. .|...+.+++
T Consensus 230 ~~~~~g-----~~~~~l~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~ 302 (1045)
T 1k32_A 230 STDLDG-----KDLRKHTSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAED 302 (1045)
T ss_dssp EEETTS-----CSCEECCCCC-SSCEEEEEESSSCEEEEETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEE
T ss_pred EEeCCC-----CcceEecCCC-CcceeeEcCCCCEEEEEeCCEEEEecCCceE-eeeeccCcccccccccccccccceee
Confidence 876421 1122333333 3455677766553333469999999995443 322211 1334689999
Q ss_pred EC-CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC-CeEEEEEeCCCCEEEEEECCCeEE-EEEccCCceeEEEcCCC
Q psy8748 1832 LS-PDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA-DVNSVCFHPSGLAFATGSEDKTAR-LFDIRADQQIATYLPPN 1908 (2004)
Q Consensus 1832 fS-Pdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s-~ItsIafSPdg~~LaSgS~DGtIr-IWDLrtgk~i~t~~~~~ 1908 (2004)
|+ |+|+++++++ ++.|++|+...+... .+..|.. .+.+++|+ +|+.+++++.++.+. +||+.+++.. .+. .
T Consensus 303 ~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~--~ 376 (1045)
T 1k32_A 303 FSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE--E 376 (1045)
T ss_dssp EEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC--C
T ss_pred ecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec--C
Confidence 99 9999999888 889999999887644 4566777 89999999 999999999888898 9999876543 332 4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCC----------eEEE
Q psy8748 1909 KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQ----------FVKV 1978 (2004)
Q Consensus 1909 ~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG----------tIrI 1978 (2004)
+...+..++|+|||++|++++.++.|++||+.+++......+|.+.+.+++|+|||++|++++.++ .|++
T Consensus 377 ~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 377 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 557799999999999999999999999999999998888878999999999999999999887654 8999
Q ss_pred EECCCCe
Q psy8748 1979 WQESNTI 1985 (2004)
Q Consensus 1979 Wdlstg~ 1985 (2004)
||+.+++
T Consensus 457 ~d~~~g~ 463 (1045)
T 1k32_A 457 YDMEGRK 463 (1045)
T ss_dssp EETTTTE
T ss_pred EECCCCc
Confidence 9999875
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.7e-21 Score=228.22 Aligned_cols=284 Identities=15% Similarity=0.125 Sum_probs=191.7
Q ss_pred eEEEEEccC-CCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcchhh
Q psy8748 1558 RNAVSFHAC-STLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSINIY 1636 (2004)
Q Consensus 1558 VtsVsFSPd-Gk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSidi~ 1636 (2004)
+.+|-|-.. ++.+..+.....+|++|+..+ ...-+...+|.++...+.. +...|+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~----------~~~~~~~~~~~~~~~~v~~--------~~~~~~~~---- 99 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALD----------AWQWEKLYTWHFAEVPVLQ--------IVPVPDVY---- 99 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESS----------SSBEEEEEEEECCSSCEEE--------ECCCTTCC----
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCC----------CccceeeEEEeccCceeEE--------EEEcCccc----
Confidence 566666444 444444345689999999988 1112788889886655444 22233221
Q ss_pred hhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCC----CCEEEEEeC
Q psy8748 1637 LKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGD----SRHCVSGSL 1712 (2004)
Q Consensus 1637 i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPD----G~~LASGS~ 1712 (2004)
...++.-=.-|.+.|++++|+|| ++++++++.
T Consensus 100 --------------------------------------------~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~ 135 (356)
T 2w18_A 100 --------------------------------------------NLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGN 135 (356)
T ss_dssp --------------------------------------------SCEEEEECSSSEEEEEEECC------CCEEEEEEEE
T ss_pred --------------------------------------------ceeeeeeccccccceEEEEECCCccccccEEEeCCC
Confidence 11111111226789999999999 999999885
Q ss_pred CCeEEEEECCCCceEEE-eeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1713 DGKLIIWDTWTGNKTQV-IPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~t-i~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.+++|++.+++.+.. ..+|...|..++|+|+|+. .....+|...+..++|+
T Consensus 136 --~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~--------------------------~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 136 --IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGG--------------------------KENQFLMPPEETILTFA 187 (356)
T ss_dssp --EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCE--------------------------EEEEEECCCSSCEEEEE
T ss_pred --eEEEEecCCCcEEEecccCCCCcEEEEEECCCCce--------------------------eeeeccCCCceeeEEee
Confidence 488897655554444 2344444444444444433 33444566666666665
Q ss_pred C----CCcEEEeecCCeEEEEECCCCceeEEeeccc--cCCeEEEEECCCCCEE------------EEEECCCeEEEEEC
Q psy8748 1792 D----DTTLLTGSGDMKIVTWNLETGQRIHEVAQAH--IGDVVSISLSPDGQYF------------VTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1792 d----d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h--~~~ItsLafSPdg~~L------------aSGS~DGsIrIWDl 1853 (2004)
+ +..+++++.|++|++||+.+++.+..+..++ ...+.+++|+|+|.++ ++|+.|++|++||.
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 3 3568899999999999999999887764332 3467888999999876 56788999999999
Q ss_pred CCCeEEEEE-----ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC-eEEEEEcCCCCEEEE
Q psy8748 1854 REKKCVQTF-----FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG-FTSCAVSSSGRYIFC 1927 (2004)
Q Consensus 1854 rs~k~I~tl-----~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~-ItsLafSPdG~~LaS 1927 (2004)
.+++.+..+ .+|...+.+..++ +..+++|+.||+|+|||+.+++.+.++. +|... +.+++|+|||++|++
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~--gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP--PVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC--CC--CCCCEEEECSSSSEEEE
T ss_pred CCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec--CCCCCeEEEEEECCCCCEEEE
Confidence 999887665 3565555444444 7899999999999999999999999884 34343 446899999999999
Q ss_pred EeCCCeEEEEEC
Q psy8748 1928 GSDDNNVHVWDL 1939 (2004)
Q Consensus 1928 GSsDGsIrIWDL 1939 (2004)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999995
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-21 Score=236.16 Aligned_cols=292 Identities=17% Similarity=0.123 Sum_probs=225.8
Q ss_pred ccceeEEEEeCCCC-EEEEEe----CCC----eEEEEEC--CCCceE--EEeeCCCCceEEEEEec--------------
Q psy8748 1692 INKVNSVHYSGDSR-HCVSGS----LDG----KLIIWDT--WTGNKT--QVIPLRSAWVMSVAFAQ-------------- 1744 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~-~LASGS----~DG----tIrVWDl--~Tgk~l--~ti~~Ht~~ItsLafSP-------------- 1744 (2004)
...|+..+|++.|. ++++|+ .|| .|++||+ .+++.+ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35788888988775 566776 467 8999999 999877 45788888888777764
Q ss_pred CCCEEEEeecC------CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCC---eEEEEECCCCc
Q psy8748 1745 SGNFVACGGMD------NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDM---KIVTWNLETGQ 1814 (2004)
Q Consensus 1745 dg~~LaSGS~D------GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DG---tI~IWDl~tg~ 1814 (2004)
.+..++.++.+ +.|++||++.. ....+.+|...+.++.|++++ .+++++.++ .|++||+.+++
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~-------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGY-------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA 214 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSC-------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCC-------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence 15566666554 79999999642 234556678899999999665 577777765 99999999987
Q ss_pred eeEEeeccccCCeEEEEECCCCCEEE-EEECCCe--EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-CC--
Q psy8748 1815 RIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKS--CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE-DK-- 1888 (2004)
Q Consensus 1815 ~i~~il~~h~~~ItsLafSPdg~~La-SGS~DGs--IrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~-DG-- 1888 (2004)
.. ....+.+.+.+++|+|+|+.|+ +++.+|. |++||+.+++. ..+..|...+.+++|+|+|++|++++. +|
T Consensus 215 ~~--~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 215 VR--QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EE--EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred EE--EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence 75 2346778899999999999888 5555554 99999988875 567788889999999999999988886 44
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD---NNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM 1965 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD---GsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~ 1965 (2004)
.|++||+.+++.. .+ ..+...+.+++|+|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+|+|+
T Consensus 292 ~i~~~d~~~~~~~-~l--~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~ 366 (415)
T 2hqs_A 292 QVYKVNINGGAPQ-RI--TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGT 366 (415)
T ss_dssp EEEEEETTSSCCE-EC--CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSS
T ss_pred EEEEEECCCCCEE-EE--ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCC
Confidence 6888898877643 22 2334568899999999999988764 58999999988764 455554 899999999999
Q ss_pred EEEEEECCC---eEEEEECCCCeEEEEEEeecCCCCcccc
Q psy8748 1966 ALVTSSWDQ---FVKVWQESNTIVWKVLKVYNLEKKTIFC 2002 (2004)
Q Consensus 1966 ~LaSgS~DG---tIrIWdlstg~l~k~Ik~~~~h~~~Vts 2002 (2004)
+|++++.|+ .|++|++.++.. +....|.+.|.+
T Consensus 367 ~l~~~s~~~~~~~l~~~d~~g~~~----~~l~~~~~~v~~ 402 (415)
T 2hqs_A 367 MVIYSSSQGMGSVLNLVSTDGRFK----ARLPATDGQVKF 402 (415)
T ss_dssp EEEEEEEETTEEEEEEEETTSCCE----EECCCSSSEEEE
T ss_pred EEEEEEcCCCccEEEEEECCCCcE----EEeeCCCCCCcC
Confidence 999998877 899999986542 334456666654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-21 Score=234.76 Aligned_cols=245 Identities=13% Similarity=0.066 Sum_probs=195.2
Q ss_pred CCEEEEEeCC------CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCC---eEEEEEcCCCCCCCcceE
Q psy8748 1704 SRHCVSGSLD------GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN---MCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1704 G~~LASGS~D------GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG---tIrVWDl~t~~~~~~~k~ 1774 (2004)
+..++.++.+ +.|++||+. +.....+..|...|.+++|+|+|+.|++++.++ .|++||+.+++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~------- 214 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------- 214 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc-------
Confidence 4555555443 799999986 555677778899999999999999999999875 99999998653
Q ss_pred EEEEecCccceeeeEEeCCCc-EE-EeecCC--eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC-CC--e
Q psy8748 1775 IRELLGYEGFLSSCRFIDDTT-LL-TGSGDM--KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV-DK--S 1847 (2004)
Q Consensus 1775 i~sl~gh~~~Vssvafsdd~~-Ll-SgS~DG--tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~-DG--s 1847 (2004)
...+..+...+.++.|++++. ++ +++.+| .|++||+.+++.. .+..|...+.+++|+|+|++|++++. +| .
T Consensus 215 ~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~--~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 215 VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--ECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE--eCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence 134556777899999997765 55 555554 4999999988763 34567788999999999999998886 44 6
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED---KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1848 IrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D---GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
|++||+.+++. ..+..+...+.+++|+|+|++|++++.+ +.|++||+.+++.. .+. .+ ..+.+++|+|+|++
T Consensus 293 i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~--~~-~~~~~~~~spdg~~ 367 (415)
T 2hqs_A 293 VYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS--ST-FLDETPSLAPNGTM 367 (415)
T ss_dssp EEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC--CS-SSCEEEEECTTSSE
T ss_pred EEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec--CC-CCcCCeEEcCCCCE
Confidence 88889988764 4455677789999999999999988764 58999999988763 332 22 27899999999999
Q ss_pred EEEEeCCC---eEEEEECCCCeeeEEEccCCCCeEEEEEcCCC
Q psy8748 1925 IFCGSDDN---NVHVWDLLKTTHNGVLSGHENRVTSISLSPNG 1964 (2004)
Q Consensus 1925 LaSGSsDG---sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg 1964 (2004)
|++++.++ .|++||+. +.....+.+|.+.|.+++|+|.-
T Consensus 368 l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 99888876 89999986 66677888999999999999864
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-19 Score=230.28 Aligned_cols=253 Identities=16% Similarity=0.179 Sum_probs=197.1
Q ss_pred cceeEEEEeC----CCCEEEEEeC-CCeEEEEECCCCceEEEeeCC-----------CCceEEEEEecCCC-EEEEeecC
Q psy8748 1693 NKVNSVHYSG----DSRHCVSGSL-DGKLIIWDTWTGNKTQVIPLR-----------SAWVMSVAFAQSGN-FVACGGMD 1755 (2004)
Q Consensus 1693 ~~VtsLaFSP----DG~~LASGS~-DGtIrVWDl~Tgk~l~ti~~H-----------t~~ItsLafSPdg~-~LaSGS~D 1755 (2004)
..+..++|+| ||+++++++. +++|.+||..+++.+..+..+ ...+.++.++|++. ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 4578999999 9999998884 899999999999999888653 23789999999765 56677788
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEe-ecCCeEEEEECCCCceeEEeecc---ccCCeEEE
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTG-SGDMKIVTWNLETGQRIHEVAQA---HIGDVVSI 1830 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSg-S~DGtI~IWDl~tg~~i~~il~~---h~~~ItsL 1830 (2004)
|.|.+||+.+.+. .. ...+ .+...+..+.|++++. ++++ ..++.|.+||..+++....+..+ |.+....+
T Consensus 302 g~i~vvd~~~~~~---l~-~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 302 GKVLLVNYKDIDN---LT-VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp TEEEEEECTTSSS---CE-EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred CeEEEEEecCCCc---ce-eEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence 9999999976532 11 1222 3456677888986654 5544 46899999999999887655322 54444443
Q ss_pred EECCC-CCEEEEEE-CCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEeCCCCEEEEEE-------CCCeEEEEE
Q psy8748 1831 SLSPD-GQYFVTGS-VDKSCKLWDFRE-------KKCVQTFFGHEADVNSVCFHPSGLAFATGS-------EDKTARLFD 1894 (2004)
Q Consensus 1831 afSPd-g~~LaSGS-~DGsIrIWDlrs-------~k~I~tl~~h~s~ItsIafSPdg~~LaSgS-------~DGtIrIWD 1894 (2004)
++|+ +..++++. .|++|.+||..+ ++.++++..|...+..++++|+++++++++ .+++|.+||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 5777 55555554 579999999998 899999999998899999999999999987 267999999
Q ss_pred ccCCceeEEEc-------CCCCCCCeEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCeeeEEEccC
Q psy8748 1895 IRADQQIATYL-------PPNKNSGFTSCAVSSSGRYIFCGS-----DDNNVHVWDLLKTTHNGVLSGH 1951 (2004)
Q Consensus 1895 Lrtgk~i~t~~-------~~~~~s~ItsLafSPdG~~LaSGS-----sDGsIrIWDL~tge~l~tL~gH 1951 (2004)
+.+++...... ...+...+..+.|+|+|+.++++. .++.|.|||..++++++.++.+
T Consensus 456 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 456 LKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp TTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 99998773331 123356789999999999999763 3799999999999999998854
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-19 Score=209.40 Aligned_cols=277 Identities=13% Similarity=0.143 Sum_probs=202.3
Q ss_pred EEEeCCCCE-EEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec-CCeEEEEEcCCCCCCCcceEE
Q psy8748 1698 VHYSGDSRH-CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM-DNMCTVYDLNNRDSTGAAKVI 1775 (2004)
Q Consensus 1698 LaFSPDG~~-LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~-DGtIrVWDl~t~~~~~~~k~i 1775 (2004)
..|.+++++ +++++.++.|.+||..+++....+..+...+ +++|+|+++++++++. ++.|.+||..++.. ..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-----~~ 76 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-----KV 76 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-----EE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-----eE
Confidence 345665555 6778889999999999999988888777777 9999999997766655 88999999986531 13
Q ss_pred EEEecCccceeeeEEeCCCc-EEEeecCC---eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE-ECCCe-EE
Q psy8748 1776 RELLGYEGFLSSCRFIDDTT-LLTGSGDM---KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG-SVDKS-CK 1849 (2004)
Q Consensus 1776 ~sl~gh~~~Vssvafsdd~~-LlSgS~DG---tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG-S~DGs-Ir 1849 (2004)
.....+.....++.|++++. ++++..++ .|.+||+.+++....+ .......+++|+|+|++++++ ..++. |.
T Consensus 77 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 77 VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI--PIPYDAVGIAISPNGNGLILIDRSSANTVR 154 (331)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE--ECCTTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE--ECCCCccceEECCCCCEEEEEecCCCceEE
Confidence 44444555555488886655 55444442 8999999998877554 234557899999999865555 55578 99
Q ss_pred EEECCCCeEE----EEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCce---eEEEcCCCCCCCeEEEEEcCC
Q psy8748 1850 LWDFREKKCV----QTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQ---IATYLPPNKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1850 IWDlrs~k~I----~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~---i~t~~~~~~~s~ItsLafSPd 1921 (2004)
+|++.....+ .........+.+++|+|+|+++++++ .++.|.+||+.+++. +..+.. ...+..++|+|+
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~spd 231 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---NNLPGTIVVSRD 231 (331)
T ss_dssp EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---SSCCCCEEECTT
T ss_pred EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---CCCCceEEECCC
Confidence 9998754332 12224456689999999999766555 688999999998887 666642 255678999999
Q ss_pred CCEEEEEe-CCCeEEEEECCCCee--eEEEccC----CC---CeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCe
Q psy8748 1922 GRYIFCGS-DDNNVHVWDLLKTTH--NGVLSGH----EN---RVTSISLSPNGMALVTSSW-DQFVKVWQESNTI 1985 (2004)
Q Consensus 1922 G~~LaSGS-sDGsIrIWDL~tge~--l~tL~gH----s~---~VtsLaFSPDg~~LaSgS~-DGtIrIWdlstg~ 1985 (2004)
|+++++++ .++.|.+||..+++. +..+..+ .. ...+++|+|||++|++++. ++.|.+|++.+..
T Consensus 232 g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 232 GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 99877665 478899999999887 4433322 22 2356899999998876655 5799999998864
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-19 Score=206.51 Aligned_cols=282 Identities=13% Similarity=0.192 Sum_probs=197.5
Q ss_pred EEEEEeCCCeEEEEECC-CCc--eEEEeeCCCCceEEEEEecCCCEEEEeecC-CeEEEEEcCCCCCCCcceEEEEEecC
Q psy8748 1706 HCVSGSLDGKLIIWDTW-TGN--KTQVIPLRSAWVMSVAFAQSGNFVACGGMD-NMCTVYDLNNRDSTGAAKVIRELLGY 1781 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~-Tgk--~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D-GtIrVWDl~t~~~~~~~k~i~sl~gh 1781 (2004)
.+++++.|+.|++||+. +++ .... ..+...+.+++|+|+++++++++.+ +.|.+|+++... ........+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD--GALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT--CCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC--CceeeccccccC
Confidence 34445779999999985 343 2333 3466788999999999988888876 999999997211 122333444433
Q ss_pred ccceeeeEEeCCCc-EEEee-cCCeEEEEECCCCc---eeEEeeccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCC
Q psy8748 1782 EGFLSSCRFIDDTT-LLTGS-GDMKIVTWNLETGQ---RIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFRE 1855 (2004)
Q Consensus 1782 ~~~Vssvafsdd~~-LlSgS-~DGtI~IWDl~tg~---~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs 1855 (2004)
. .+..++|++++. +++++ .++.|.+||+..+. .... . .....+.+++|+|+++++++++ .++.|++||+.+
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-V-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-E-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc-c-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 3 778888986654 55555 48899999995332 2222 2 2344688999999999888887 899999999987
Q ss_pred -CeEEE----EEec-CCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccC--Cce--eEEEc-CC---CCCCCeEEEEEcC
Q psy8748 1856 -KKCVQ----TFFG-HEADVNSVCFHPSGLAFATGS-EDKTARLFDIRA--DQQ--IATYL-PP---NKNSGFTSCAVSS 1920 (2004)
Q Consensus 1856 -~k~I~----tl~~-h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrt--gk~--i~t~~-~~---~~~s~ItsLafSP 1920 (2004)
++... .... ....+.+++|+|+++++++++ .++.|.+||+.. ++. ..... .. .....+..++|+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP 240 (343)
T ss_dssp TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence 54432 2222 345788999999999776655 789999999953 332 22221 11 1124567899999
Q ss_pred CCCEEEEEe-CCCeEEEEECC----CCeeeEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECC--CCeEEEEEEe
Q psy8748 1921 SGRYIFCGS-DDNNVHVWDLL----KTTHNGVLSGHENRVTSISLSPNGMALVTSS-WDQFVKVWQES--NTIVWKVLKV 1992 (2004)
Q Consensus 1921 dG~~LaSGS-sDGsIrIWDL~----tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS-~DGtIrIWdls--tg~l~k~Ik~ 1992 (2004)
+|++++++. .++.|++||+. +.+.+..+..+.. +.+++|+|+|++|++++ .|+.|.+|+++ ++. ++.+..
T Consensus 241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~-~~~~~~ 318 (343)
T 1ri6_A 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL-LHEKGR 318 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE-EEEEEE
T ss_pred CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCce-eeEccc
Confidence 999887554 78999999998 2344555555444 89999999999988887 58999999554 554 444554
Q ss_pred ecC
Q psy8748 1993 YNL 1995 (2004)
Q Consensus 1993 ~~~ 1995 (2004)
+..
T Consensus 319 ~~~ 321 (343)
T 1ri6_A 319 YAV 321 (343)
T ss_dssp EEC
T ss_pred ccc
Confidence 443
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-19 Score=207.80 Aligned_cols=275 Identities=15% Similarity=0.060 Sum_probs=210.6
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCCC--ceEEEEEecCCCEE-EEeecCCeEEEEEcCCCCCCCcceEEEEEec-
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSA--WVMSVAFAQSGNFV-ACGGMDNMCTVYDLNNRDSTGAAKVIRELLG- 1780 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~--~ItsLafSPdg~~L-aSGS~DGtIrVWDl~t~~~~~~~k~i~sl~g- 1780 (2004)
+++++++.++.|++||..+++....+..... .+.+++|+|+++.+ +++..++.|.+||+.+++ ....+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~------~~~~~~~~ 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE------TLGRIDLS 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC------EEEEEECC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC------eEeeEEcC
Confidence 4789999999999999999998888764432 47899999999765 555667899999997653 2222221
Q ss_pred C----ccceeeeEEeCCC-cEEEee------------cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE
Q psy8748 1781 Y----EGFLSSCRFIDDT-TLLTGS------------GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1781 h----~~~Vssvafsdd~-~LlSgS------------~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
+ ...+..+.|++++ .++++. .++.|.+||..+++....+. ....+.+++|+|+|++++++
T Consensus 76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGL- 152 (337)
T ss_dssp BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEE-
T ss_pred CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCCEEEEe-
Confidence 1 2256678888665 566664 57999999999887765543 24567889999999988888
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC------------------------eEEEEEccCCc
Q psy8748 1844 VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK------------------------TARLFDIRADQ 1899 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG------------------------tIrIWDLrtgk 1899 (2004)
++.|++||+.+++....+..+.. ...+.|+|++..++..+.++ .|.+||+.+++
T Consensus 153 -~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 153 -GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp -SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred -CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 68999999999988877754431 11237899988765554332 47899999887
Q ss_pred eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1900 QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1900 ~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
.. ......+...+..++|+|+|++++++ ++.|++||+.+++....+..+ ..+.+++|+|+|++|++++.|+.|++|
T Consensus 231 ~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~ 306 (337)
T 1pby_B 231 MA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAY 306 (337)
T ss_dssp EE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred ce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEE
Confidence 75 33333344567899999999999988 799999999999988877643 567899999999999999999999999
Q ss_pred ECCCCeEEEEEEeec
Q psy8748 1980 QESNTIVWKVLKVYN 1994 (2004)
Q Consensus 1980 dlstg~l~k~Ik~~~ 1994 (2004)
|+.+++....+....
T Consensus 307 d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 307 DAETLEKKGQVDLPG 321 (337)
T ss_dssp ETTTCCEEEEEECGG
T ss_pred ECcCCcEEEEEEcCC
Confidence 999998777666543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-20 Score=240.94 Aligned_cols=284 Identities=10% Similarity=0.088 Sum_probs=217.5
Q ss_pred ccceeEEEEeCCCCEEEEEeC-CC-----eEEEEECCCCceEEEeeCCCC------------------------ceEEEE
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSL-DG-----KLIIWDTWTGNKTQVIPLRSA------------------------WVMSVA 1741 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~-DG-----tIrVWDl~Tgk~l~ti~~Ht~------------------------~ItsLa 1741 (2004)
...|.+++|||||++|++++. || .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 899999999988777755432 378999
Q ss_pred EecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeec
Q psy8748 1742 FAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ 1821 (2004)
Q Consensus 1742 fSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~ 1821 (2004)
|+|||++|++++. +.|++||+.++.. .....+..+...+..+.|++++..++...++.|++||+.+++... +..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~----~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~-~~~ 189 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGK----AAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ-LTA 189 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCST----TSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE-CCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCc----ceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE-ecc
Confidence 9999999999886 9999999976510 012234556677899999988775555557799999999877653 222
Q ss_pred cccCC----------------eEEEEECCCCCEEEEEECCC---------------------------------eEEEEE
Q psy8748 1822 AHIGD----------------VVSISLSPDGQYFVTGSVDK---------------------------------SCKLWD 1852 (2004)
Q Consensus 1822 ~h~~~----------------ItsLafSPdg~~LaSGS~DG---------------------------------sIrIWD 1852 (2004)
.+... +.+++|+|||++|++++.|+ .|++||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 22221 47899999999999988765 789999
Q ss_pred CCC-CeEEEEEe--cCCCCeEEEEEeCCCCEEEEEEC-----CCeEEEEEccCCceeEEEcCCCC--CCCeEEEEEcCCC
Q psy8748 1853 FRE-KKCVQTFF--GHEADVNSVCFHPSGLAFATGSE-----DKTARLFDIRADQQIATYLPPNK--NSGFTSCAVSSSG 1922 (2004)
Q Consensus 1853 lrs-~k~I~tl~--~h~s~ItsIafSPdg~~LaSgS~-----DGtIrIWDLrtgk~i~t~~~~~~--~s~ItsLafSPdG 1922 (2004)
+.+ ++...... .|...+.+++| |||++|++++. ++.|++||+.+++....+..... ...+..++|+|||
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence 988 77554433 36778999999 99999987764 56799999999887655532211 0134578999999
Q ss_pred CEEEEEeCCCeEEEEECC-CCeeeEEEccCCCCeEEE-EEcCCCCEEEEE-ECCC--eEEEEECCC
Q psy8748 1923 RYIFCGSDDNNVHVWDLL-KTTHNGVLSGHENRVTSI-SLSPNGMALVTS-SWDQ--FVKVWQESN 1983 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~-tge~l~tL~gHs~~VtsL-aFSPDg~~LaSg-S~DG--tIrIWdlst 1983 (2004)
+++++++.||.+++|.+. ++. ...+..|...|..+ .|+|+|+.|+.. +.|+ .+++|++..
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 999999999988888765 445 77788888889888 599999987654 4455 899999863
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-18 Score=204.77 Aligned_cols=271 Identities=14% Similarity=0.054 Sum_probs=213.1
Q ss_pred cccceeEEEEeCCCCEEEEEeC-------CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEE-EeecCCeEEEEE
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSL-------DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVA-CGGMDNMCTVYD 1762 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~-------DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~La-SGS~DGtIrVWD 1762 (2004)
....+..++|+|+|+++++++. ++.|.+||..+++....+... ..+.+++|+|+|++++ ++..++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 4567889999999998888774 568999999999988888754 3478899999999555 455579999999
Q ss_pred cCCCCCCCcceEEEEEecCcc---------ceeeeEEeCCC-cEEEee--cCCeEEEEECCCCceeEEeeccccCCeEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEG---------FLSSCRFIDDT-TLLTGS--GDMKIVTWNLETGQRIHEVAQAHIGDVVSI 1830 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~---------~Vssvafsdd~-~LlSgS--~DGtI~IWDl~tg~~i~~il~~h~~~ItsL 1830 (2004)
..+++ ....+..+.. ...++.+++++ .+++++ .++.|.+||..+++....+ ..+...+.++
T Consensus 118 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~ 190 (353)
T 3vgz_A 118 AKTGE------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI-QNTGKMSTGL 190 (353)
T ss_dssp TTTCC------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE-CCCCTTCCCC
T ss_pred CCCCe------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe-cCCCCccceE
Confidence 97653 2333333221 25778888654 455554 4789999999998877554 3345558899
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeEEEEEec----CCCCeEEEEEeCCCCEEEEEECC-CeEEEEEccCCceeEEEc
Q psy8748 1831 SLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG----HEADVNSVCFHPSGLAFATGSED-KTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1831 afSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~----h~s~ItsIafSPdg~~LaSgS~D-GtIrIWDLrtgk~i~t~~ 1905 (2004)
+|+|+++++++++.++.|.+||..+++.+..+.. +...+.+++|+|+++++++++.+ +.|.+||..+++....+.
T Consensus 191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 191 ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 9999999999999999999999999998877754 45568889999999987777654 899999999998887775
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q psy8748 1906 PPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQ 1974 (2004)
Q Consensus 1906 ~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG 1974 (2004)
... ...++|+|+|+++++++ .++.|.+||..+++.+..+..+ ..+.+++|+|+|++|+.+..++
T Consensus 271 ~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 271 APE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred cCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 432 24689999999776666 6899999999999988887653 4789999999999877776664
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-19 Score=244.85 Aligned_cols=281 Identities=13% Similarity=0.092 Sum_probs=225.2
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC-CceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT-GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T-gk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
..+.+|.+.+.+++|+++ .++++++.||.+.+|.+.. +.....+..|. .+...+|+|+|+.++++ .++.|.+|+..
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~ 273 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD 273 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC
Confidence 445789999999999988 6677888889999997653 44455555555 36678999999998887 48999999983
Q ss_pred CCCCCCcceEEEEEec-----------CccceeeeEEe-CCCc-EEEeecCCeEEEEECCCCceeEEeeccccC-CeEEE
Q psy8748 1765 NRDSTGAAKVIRELLG-----------YEGFLSSCRFI-DDTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIG-DVVSI 1830 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~g-----------h~~~Vssvafs-dd~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~-~ItsL 1830 (2004)
.. . +..+.+ +...+..+.|+ +++. +++++ ++.|++|+...+.... ...+.. .+.++
T Consensus 274 ~~------~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~--~~~~~~~~~~~~ 343 (1045)
T 1k32_A 274 TE------K-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK--VPEPLRIRYVRR 343 (1045)
T ss_dssp TC------C-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE--CSCCSCEEEEEE
T ss_pred ce------E-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE--ccCCCcceEEee
Confidence 32 1 112222 34468899999 7765 55544 8999999998876542 345666 89999
Q ss_pred EECCCCCEEEEEECCCeEE-EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCC
Q psy8748 1831 SLSPDGQYFVTGSVDKSCK-LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNK 1909 (2004)
Q Consensus 1831 afSPdg~~LaSGS~DGsIr-IWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~ 1909 (2004)
+|+ +|+.+++++.++.+. +||...++.. .+.+|...+.+++|+|+|+++++++.++.|++||+.+++...... .+
T Consensus 344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~--~~ 419 (1045)
T 1k32_A 344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER--SR 419 (1045)
T ss_dssp CSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CS
T ss_pred eEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc--CC
Confidence 999 999999999888899 9999877654 444777899999999999999999999999999999888766552 34
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC----------eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGSDDN----------NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGSsDG----------sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
...+..++|+|||++|++++.++ .|++||+.+++ ...+..|...+.+++|+|||++|++++.++...+|
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence 56788999999999999887654 89999999887 67778888899999999999999999999888888
Q ss_pred ECCCC
Q psy8748 1980 QESNT 1984 (2004)
Q Consensus 1980 dlstg 1984 (2004)
+....
T Consensus 499 ~~~~~ 503 (1045)
T 1k32_A 499 DRVVL 503 (1045)
T ss_dssp CSSSS
T ss_pred chhcc
Confidence 86543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.1e-19 Score=228.10 Aligned_cols=281 Identities=15% Similarity=0.150 Sum_probs=206.1
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC-----
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN----- 1765 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t----- 1765 (2004)
+...|.+++|||| +.++.+. ++.|++||+.+++... +..+...+.+++|+|||+.|+++ .++.|++|++.+
T Consensus 80 ~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 80 DAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp --CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred cccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 3467999999999 6666554 5999999998886654 44466778999999999999985 689999999986
Q ss_pred CCCCCcceEEEEEecCcc--------------ceeeeEEeCCCc-EEEee------------------------------
Q psy8748 1766 RDSTGAAKVIRELLGYEG--------------FLSSCRFIDDTT-LLTGS------------------------------ 1800 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~--------------~Vssvafsdd~~-LlSgS------------------------------ 1800 (2004)
+.. ......+.. .+.++.|++++. +++++
T Consensus 156 g~~------~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 156 SRA------IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp CCC------EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred CCc------EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 431 111111111 247888986654 66665
Q ss_pred ---cCCeEEEEECCCCceeEEee-ccccCCeEEEEECCCCCEEEEEECCC-----eEEEEECCCCeEEEEEe--cCCC--
Q psy8748 1801 ---GDMKIVTWNLETGQRIHEVA-QAHIGDVVSISLSPDGQYFVTGSVDK-----SCKLWDFREKKCVQTFF--GHEA-- 1867 (2004)
Q Consensus 1801 ---~DGtI~IWDl~tg~~i~~il-~~h~~~ItsLafSPdg~~LaSGS~DG-----sIrIWDlrs~k~I~tl~--~h~s-- 1867 (2004)
.++.|++||+.+++...... ..+...+.+++|+|||+++++++.++ .|++||..+++....+. .+..
T Consensus 230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 44789999999887643322 24667799999999999999988775 89999999983333332 2222
Q ss_pred -CeEEEEEeC--CCCEEEEEECCCeEEEEEcc-CCceeEEEcCCCCCCCeEE-EEEcCCCCEEEEEeC-CC----eEEEE
Q psy8748 1868 -DVNSVCFHP--SGLAFATGSEDKTARLFDIR-ADQQIATYLPPNKNSGFTS-CAVSSSGRYIFCGSD-DN----NVHVW 1937 (2004)
Q Consensus 1868 -~ItsIafSP--dg~~LaSgS~DGtIrIWDLr-tgk~i~t~~~~~~~s~Its-LafSPdG~~LaSGSs-DG----sIrIW 1937 (2004)
.+.+++|+| +|+++++++.||.+++|++. +++....+. .+...+.. ++|+|+|+.|+.++. ++ .|+.|
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 246789999 99999999999999999886 555555553 33455665 799999998876554 44 67778
Q ss_pred ECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCe
Q psy8748 1938 DLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWD----QFVKVWQESNTI 1985 (2004)
Q Consensus 1938 DL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D----GtIrIWdlstg~ 1985 (2004)
|+.+++ ...+. |...+.+++|+|||++++.++.+ +.|++||+.+++
T Consensus 388 d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 388 DIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 887765 33343 67789999999999998876544 569999999886
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-18 Score=198.93 Aligned_cols=265 Identities=15% Similarity=0.194 Sum_probs=184.5
Q ss_pred cccceeEEEEeCCCCEEEEEeCC-CeEEEEECC--CCce--EEEeeCCCCceEEEEEecCCCEEEEeec-CCeEEEEEcC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLD-GKLIIWDTW--TGNK--TQVIPLRSAWVMSVAFAQSGNFVACGGM-DNMCTVYDLN 1764 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~D-GtIrVWDl~--Tgk~--l~ti~~Ht~~ItsLafSPdg~~LaSGS~-DGtIrVWDl~ 1764 (2004)
|...+.+++|+|+|+++++++.+ +.|.+|++. +++. +..+..+. .+.+++|+|+++++++++. ++.|.+|++.
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 45577889999999999988886 999999987 5553 34455444 7899999999998876654 8899999995
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEee-cCCeEEEEECCC-CceeE----EeeccccCCeEEEEECCCCC
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGS-GDMKIVTWNLET-GQRIH----EVAQAHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS-~DGtI~IWDl~t-g~~i~----~il~~h~~~ItsLafSPdg~ 1837 (2004)
.+. ......... ....+.++.|++++ .+++++ .++.|.+||+.+ ++... .........+.+++|+|+++
T Consensus 115 ~~~---~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~ 190 (343)
T 1ri6_A 115 DGL---PVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ 190 (343)
T ss_dssp TTE---EEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred CCc---ccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC
Confidence 221 223333333 33457888888665 466666 899999999987 54321 12222345788999999999
Q ss_pred EEEEEE-CCCeEEEEECCC--CeE--EEEEec---C---CCCeEEEEEeCCCCEEEEEE-CCCeEEEEEcc--CC--cee
Q psy8748 1838 YFVTGS-VDKSCKLWDFRE--KKC--VQTFFG---H---EADVNSVCFHPSGLAFATGS-EDKTARLFDIR--AD--QQI 1901 (2004)
Q Consensus 1838 ~LaSGS-~DGsIrIWDlrs--~k~--I~tl~~---h---~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLr--tg--k~i 1901 (2004)
++++++ .++.|.+||+.. ++. ...... . ...+.+++|+|+|++++++. .++.|.+||+. ++ +.+
T Consensus 191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~ 270 (343)
T 1ri6_A 191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE 270 (343)
T ss_dssp EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence 776665 789999999953 332 222221 1 23567899999999887554 78999999998 33 333
Q ss_pred EEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEE--CCCCee--eEEEccCCCCeEEEEEcCCC
Q psy8748 1902 ATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWD--LLKTTH--NGVLSGHENRVTSISLSPNG 1964 (2004)
Q Consensus 1902 ~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWD--L~tge~--l~tL~gHs~~VtsLaFSPDg 1964 (2004)
..+.. . ..+..++|+|+|+++++++ .++.|.+|+ ..+++. +..+.. .....+++|.++.
T Consensus 271 ~~~~~--~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 271 GFQPT--E-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHE 334 (343)
T ss_dssp EEEEC--S-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred eeecC--C-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEccc
Confidence 33322 2 2378899999999998888 579999995 445543 333333 2445667776643
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-19 Score=233.54 Aligned_cols=286 Identities=13% Similarity=0.038 Sum_probs=196.1
Q ss_pred ceeEEEEeCCCCEEEEEeCC---------CeEEEEECCCCceEEEee---CCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLD---------GKLIIWDTWTGNKTQVIP---LRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~D---------GtIrVWDl~Tgk~l~ti~---~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
.|.+++|||||++|++++.+ +.+++||+.+++. ..+. .|...+..++|+|||+.|+.++. +.|++|
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 57899999999999999874 7889999998876 3333 34445889999999999999886 789999
Q ss_pred EcCCCCCCCcceEEEEEecCcc------------------ceeeeEEeCCCc-EEEeecCC-------------------
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEG------------------FLSSCRFIDDTT-LLTGSGDM------------------- 1803 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~------------------~Vssvafsdd~~-LlSgS~DG------------------- 1803 (2004)
++.++.. ......+.. .+..+.|++++. +++++.++
T Consensus 140 ~~~~g~~------~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (723)
T 1xfd_A 140 AHVGKQA------IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV 213 (723)
T ss_dssp SSSSSCC------EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred ECCCCce------EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcc
Confidence 9976531 122222222 236788987654 66665432
Q ss_pred ---------------eEEEEECCCCceeEEeecc-----ccCCeEEEEECCCCCEEEEEECC----CeEEEEECCCCeEE
Q psy8748 1804 ---------------KIVTWNLETGQRIHEVAQA-----HIGDVVSISLSPDGQYFVTGSVD----KSCKLWDFREKKCV 1859 (2004)
Q Consensus 1804 ---------------tI~IWDl~tg~~i~~il~~-----h~~~ItsLafSPdg~~LaSGS~D----GsIrIWDlrs~k~I 1859 (2004)
.|++||+.+++....+... +...+.+++|+|||+++++.... +.|++||+.+++..
T Consensus 214 ~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~ 293 (723)
T 1xfd_A 214 KPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (723)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred eeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence 8999999988754333211 25678999999999988776533 57999999998876
Q ss_pred EEEec-CCCCe----EEEEEeCCCCEEEE--EECCC------eEEEEE-ccCCce--eEEEcCCCCCCCeEE-EEEcCCC
Q psy8748 1860 QTFFG-HEADV----NSVCFHPSGLAFAT--GSEDK------TARLFD-IRADQQ--IATYLPPNKNSGFTS-CAVSSSG 1922 (2004)
Q Consensus 1860 ~tl~~-h~s~I----tsIafSPdg~~LaS--gS~DG------tIrIWD-Lrtgk~--i~t~~~~~~~s~Its-LafSPdG 1922 (2004)
..+.. +...+ ..++|+|||+.|+. +..+| .|.+|| ..++.. ...+. .....+.. ++|+|+|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~~~~~spdg 371 (723)
T 1xfd_A 294 KKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGDWDVTKILAYDEKG 371 (723)
T ss_dssp EEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSSSCEEEEEEEETTT
T ss_pred EEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCCeEEEeeeEEcCCC
Confidence 65543 33444 37899999997665 45677 567777 344431 33332 22233444 6999999
Q ss_pred CEEEEEeCC---CeEEEEECCCCe--eeEEEcc---CCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEE
Q psy8748 1923 RYIFCGSDD---NNVHVWDLLKTT--HNGVLSG---HENRVTSISLSPNGMALVTSSWD-Q--FVKVWQESNTIVWKV 1989 (2004)
Q Consensus 1923 ~~LaSGSsD---GsIrIWDL~tge--~l~tL~g---Hs~~VtsLaFSPDg~~LaSgS~D-G--tIrIWdlstg~l~k~ 1989 (2004)
+.|+..+.+ +.+++|++.... ....+.. |...+..++|+|||++++..... + ...+++..++.....
T Consensus 372 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 449 (723)
T 1xfd_A 372 NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD 449 (723)
T ss_dssp TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEE
T ss_pred CEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEE
Confidence 999866655 789999986432 3333443 67779999999999988775432 2 344566655544333
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-17 Score=196.85 Aligned_cols=227 Identities=14% Similarity=0.134 Sum_probs=179.1
Q ss_pred eeEEEEeCCCCEEEE-EeCCCeEEEEECCCCceEEEeeCCCCc---------eEEEEEecCCCEEEEee--cCCeEEEEE
Q psy8748 1695 VNSVHYSGDSRHCVS-GSLDGKLIIWDTWTGNKTQVIPLRSAW---------VMSVAFAQSGNFVACGG--MDNMCTVYD 1762 (2004)
Q Consensus 1695 VtsLaFSPDG~~LAS-GS~DGtIrVWDl~Tgk~l~ti~~Ht~~---------ItsLafSPdg~~LaSGS--~DGtIrVWD 1762 (2004)
+.+++|+|+|++++. +..++.|.+||..+++....+..+... +.+++|+|+++.+++++ .++.|.+||
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 457899999996554 555799999999999998888765432 78999999999877776 478999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeec---cccCCeEEEEECCCCCE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQ---AHIGDVVSISLSPDGQY 1838 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~---~h~~~ItsLafSPdg~~ 1838 (2004)
..++ +....+..+...+..+.++++ +.+++++.++.|.+||..+++....... ++...+.+++|+|++++
T Consensus 171 ~~~~------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 244 (353)
T 3vgz_A 171 GGNI------KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQR 244 (353)
T ss_dssp TTTT------EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTE
T ss_pred CCCC------ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCE
Confidence 9754 444455445556778888855 5688888899999999999987765533 24556888999999998
Q ss_pred EEEEECC-CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1839 FVTGSVD-KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1839 LaSGS~D-GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
+++++.+ +.|.+||..+++.+..+.... ..+++|+|+|+++++++ .++.|.+||..+++....+... ..+..+
T Consensus 245 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~ 319 (353)
T 3vgz_A 245 AFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP---THPNSL 319 (353)
T ss_dssp EEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---SEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---CCCCeE
Confidence 8777654 899999999998887776543 36799999999766665 6899999999999888777432 357899
Q ss_pred EEcCCCCEEEEEeCCC
Q psy8748 1917 AVSSSGRYIFCGSDDN 1932 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDG 1932 (2004)
+|+|+|++++++..++
T Consensus 320 ~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 320 ALSADGKTLYVSVKQK 335 (353)
T ss_dssp EECTTSCEEEEEEECC
T ss_pred EEcCCCCEEEEEEccc
Confidence 9999999888776654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-19 Score=199.65 Aligned_cols=253 Identities=14% Similarity=0.135 Sum_probs=190.1
Q ss_pred EEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC-CCCCCcceEEEEEecC-cccee
Q psy8748 1709 SGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN-RDSTGAAKVIRELLGY-EGFLS 1786 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t-~~~~~~~k~i~sl~gh-~~~Vs 1786 (2004)
.++.|+.|++||+.+++... +..|...|.+++|+|+++++++++ ++.|.+||+.+ +. .......+ ...+.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~------~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS------PEKVDTGFATICNN 88 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS------CEECCCTTCCCBCS
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC------ceEecccccccccc
Confidence 34578999999998887664 445788999999999999999986 78999999976 43 12222333 36778
Q ss_pred eeEEeCCCc-EEEee--c--CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE-EEECCCeEEEEECC-CCeEE
Q psy8748 1787 SCRFIDDTT-LLTGS--G--DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFR-EKKCV 1859 (2004)
Q Consensus 1787 svafsdd~~-LlSgS--~--DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La-SGS~DGsIrIWDlr-s~k~I 1859 (2004)
++.|++++. +++++ . ...|..|+..++... .+ . +...+.+++|+|++++++ +++.++.+++|+++ .....
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-LM-T-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-EC-C-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-Ee-e-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc
Confidence 899986654 66666 2 345556666655532 22 2 233588999999999877 77789999999853 22334
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEcc-CCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC------
Q psy8748 1860 QTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIR-ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD------ 1931 (2004)
Q Consensus 1860 ~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLr-tgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD------ 1931 (2004)
..+..+...+.+++|+|+++++++++ .++.+++|++. .+.....+. .+...+..++|+|+|++|++++.+
T Consensus 166 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 56667888999999999999888766 58999999986 444554442 344678899999999999988765
Q ss_pred -----CeEEEEECCCCeee--EEEccCCCCeEEEEEcCCCCEEEEEECCC
Q psy8748 1932 -----NNVHVWDLLKTTHN--GVLSGHENRVTSISLSPNGMALVTSSWDQ 1974 (2004)
Q Consensus 1932 -----GsIrIWDL~tge~l--~tL~gHs~~VtsLaFSPDg~~LaSgS~DG 1974 (2004)
+.|++||+.+++.. ..+.+|...+.+++|+|++++|++++.|.
T Consensus 244 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 56999999887653 44457888999999999999998887664
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=235.75 Aligned_cols=282 Identities=12% Similarity=0.089 Sum_probs=206.5
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCC---ceEEEEEecCCCEEEEeecC---------CeEEEE
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSA---WVMSVAFAQSGNFVACGGMD---------NMCTVY 1761 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~---~ItsLafSPdg~~LaSGS~D---------GtIrVW 1761 (2004)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999997776 7899999999999998888877765 49999999999999998764 788899
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEeecCCeEEEEECCCCceeEEeeccccCC--------------
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGD-------------- 1826 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~-------------- 1826 (2004)
|+.++.. ..+....++...+..+.|++++. ++.++ ++.|++||..+++..... ..+...
T Consensus 97 d~~~~~~----~~l~~~~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 97 KIPHGDP----QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp ESSSCCC----EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHHHHT
T ss_pred ECCCCce----EeccCCccccccccccEECCCCCEEEEEE-CCeEEEEECCCCceEEEe-cCCCCCceECcccceeEEEE
Confidence 9987531 22222233444578899997765 55544 589999999988765333 332322
Q ss_pred ----eEEEEECCCCCEEEEEECCC----------------------------------eEEEEECCCCeEEEEEecC---
Q psy8748 1827 ----VVSISLSPDGQYFVTGSVDK----------------------------------SCKLWDFREKKCVQTFFGH--- 1865 (2004)
Q Consensus 1827 ----ItsLafSPdg~~LaSGS~DG----------------------------------sIrIWDlrs~k~I~tl~~h--- 1865 (2004)
+.+++|+|||++|++++.|+ .|++||+.+++....+..+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 37899999999999987553 7999999988765555543
Q ss_pred ---CCCeEEEEEeCCCCEEEEEECC----CeEEEEEccCCceeEEEcCCCCCCCe----EEEEEcCCCCEEEE--EeCCC
Q psy8748 1866 ---EADVNSVCFHPSGLAFATGSED----KTARLFDIRADQQIATYLPPNKNSGF----TSCAVSSSGRYIFC--GSDDN 1932 (2004)
Q Consensus 1866 ---~s~ItsIafSPdg~~LaSgS~D----GtIrIWDLrtgk~i~t~~~~~~~s~I----tsLafSPdG~~LaS--GSsDG 1932 (2004)
...+.+++|+|||+++++++.. +.|++||+.+++........ +...+ ..++|+|||+.|+. +..+|
T Consensus 251 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 5678999999999988776533 57999999988866554221 11222 36799999997775 45677
Q ss_pred ------eEEEEE-CCCCe--eeEEEccCCCCeEE-EEEcCCCCEEEEEECC---CeEEEEECCC
Q psy8748 1933 ------NVHVWD-LLKTT--HNGVLSGHENRVTS-ISLSPNGMALVTSSWD---QFVKVWQESN 1983 (2004)
Q Consensus 1933 ------sIrIWD-L~tge--~l~tL~gHs~~Vts-LaFSPDg~~LaSgS~D---GtIrIWdlst 1983 (2004)
.|++|| ...+. +...+..+...+.. ++|+|||+.|+..+.+ +.+++|+++.
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 577777 34443 14455444445555 6999999999877665 7899999864
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-17 Score=193.59 Aligned_cols=242 Identities=10% Similarity=0.096 Sum_probs=176.9
Q ss_pred cceeEEEEeCCCCEEEEEeC-CCeEEEEECCCCce-EEEeeCCCCceEEEEEecCCCEEEEeecCC---eEEEEEcCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSL-DGKLIIWDTWTGNK-TQVIPLRSAWVMSVAFAQSGNFVACGGMDN---MCTVYDLNNRD 1767 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~-DGtIrVWDl~Tgk~-l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG---tIrVWDl~t~~ 1767 (2004)
..+ +++|+|+|+++++++. ++.|++||..+++. ...+..+..+..+++|+|++++++++..++ .|.+||+.++
T Consensus 41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~- 118 (331)
T 3u4y_A 41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN- 118 (331)
T ss_dssp CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT-
T ss_pred Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC-
Confidence 445 8999999997776665 89999999999987 777777777666699999999999666553 8999999764
Q ss_pred CCCcceEEEEEecCccceeeeEEeCCC-cEEEe-ecCCe-EEEEECCCCceeEEe---eccccCCeEEEEECCCCCEEEE
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFIDDT-TLLTG-SGDMK-IVTWNLETGQRIHEV---AQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSg-S~DGt-I~IWDl~tg~~i~~i---l~~h~~~ItsLafSPdg~~LaS 1841 (2004)
+....+.. .....++.|++++ .++++ ..++. |.+|++.....+... .........+++|+|+|+++++
T Consensus 119 -----~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 119 -----KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp -----EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred -----CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence 23333333 3445788898765 35554 55578 999999864433111 1133456899999999997666
Q ss_pred EE-CCCeEEEEECCCCeE---EEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCce--eEEEcCC--CCC--
Q psy8748 1842 GS-VDKSCKLWDFREKKC---VQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQ--IATYLPP--NKN-- 1910 (2004)
Q Consensus 1842 GS-~DGsIrIWDlrs~k~---I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~--i~t~~~~--~~~-- 1910 (2004)
++ .++.|.+||+.+++. +..+.. ...+.+++|+|+|+++++++ .++.|.+||..+++. +..+... ...
T Consensus 193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
T 3u4y_A 193 ANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRP 271 (331)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGG
T ss_pred EeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCC
Confidence 55 688999999998887 766654 46778999999999777665 477899999998876 3333211 111
Q ss_pred -CCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCe
Q psy8748 1911 -SGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTT 1943 (2004)
Q Consensus 1911 -s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge 1943 (2004)
.....++|+|+|+++++++. ++.|.+||+....
T Consensus 272 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 272 LFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp GTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 12355899999998876655 5699999997654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-18 Score=223.20 Aligned_cols=277 Identities=15% Similarity=0.142 Sum_probs=190.6
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCC-----CceEEEeeCCCCc--------------eEEEEEecCCCEEEEe
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT-----GNKTQVIPLRSAW--------------VMSVAFAQSGNFVACG 1752 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T-----gk~l~ti~~Ht~~--------------ItsLafSPdg~~LaSG 1752 (2004)
.+.+.+++|||||++|+++ .|+.|++||+.+ ++.......+... +.++.|+|||++|+++
T Consensus 120 ~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~ 198 (706)
T 2z3z_A 120 NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY 198 (706)
T ss_dssp TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence 3456778999999999985 679999999998 7766544444333 4889999999999998
Q ss_pred e---------------------------------cCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEE
Q psy8748 1753 G---------------------------------MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLT 1798 (2004)
Q Consensus 1753 S---------------------------------~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlS 1798 (2004)
+ .++.|.+||+.++.. ........+...+..+.|++++. +++
T Consensus 199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~ 274 (706)
T 2z3z_A 199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT----VYLQTGEPKEKFLTNLSWSPDENILYV 274 (706)
T ss_dssp EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE----EECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce----EeeccCCCCceeEeeEEEECCCCEEEE
Confidence 7 447899999976421 11111124567788999997665 777
Q ss_pred eecCC-----eEEEEECCCCceeEEeecc-ccC---CeEEEEECC--CCCEEEEEECCCeEEEEECC-CCeEEEEEecCC
Q psy8748 1799 GSGDM-----KIVTWNLETGQRIHEVAQA-HIG---DVVSISLSP--DGQYFVTGSVDKSCKLWDFR-EKKCVQTFFGHE 1866 (2004)
Q Consensus 1799 gS~DG-----tI~IWDl~tg~~i~~il~~-h~~---~ItsLafSP--dg~~LaSGS~DGsIrIWDlr-s~k~I~tl~~h~ 1866 (2004)
++.++ .|++||..+++....+... +.. .+.+++|+| +|+++++++.||.+++|+++ ++..+..+..+.
T Consensus 275 ~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~ 354 (706)
T 2z3z_A 275 AEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE 354 (706)
T ss_dssp EEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred EEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC
Confidence 66665 8999999998444333322 222 246789999 99999999999999999876 667777787777
Q ss_pred CCeEE-EEEeCCCCEEEEEECC-C----eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC----CeEEE
Q psy8748 1867 ADVNS-VCFHPSGLAFATGSED-K----TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD----NNVHV 1936 (2004)
Q Consensus 1867 s~Its-IafSPdg~~LaSgS~D-G----tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD----GsIrI 1936 (2004)
..+.+ ++|+|+|+.+++++.+ + .|..||..+++ ...+. +...+..++|+|+|++++.++.+ +.|++
T Consensus 355 ~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l 430 (706)
T 2z3z_A 355 WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTV 430 (706)
T ss_dssp SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEE
T ss_pred eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEE
Confidence 77877 7999999987766554 3 67777777665 33332 34568899999999998876543 56999
Q ss_pred EECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCC--eEEEEE
Q psy8748 1937 WDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQ--FVKVWQ 1980 (2004)
Q Consensus 1937 WDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG--tIrIWd 1980 (2004)
||+.+++ ...+ .+...+....+.+.. .+..-+.|| .+..|-
T Consensus 431 ~d~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~ 473 (706)
T 2z3z_A 431 TNIGKGS-HTLL-EAKNPDTGYAMPEIR-TGTIMAADGQTPLYYKL 473 (706)
T ss_dssp EESSSCE-EEEE-ECC------CCCCEE-EEEEECTTSSSEEEEEE
T ss_pred EECCCCe-Eeec-cccchhhhcCCCCcE-EEEEEcCCCCEEEEEEE
Confidence 9998887 3333 334444444443322 233334455 555554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=221.24 Aligned_cols=271 Identities=11% Similarity=0.081 Sum_probs=199.5
Q ss_pred ccceeEEEEeCCCCEEEEEeC-CCeEEEEECCCCceEEEeeCCC-CceEEEEEecCCCEEEEeec---CCeEEEEEcCCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSL-DGKLIIWDTWTGNKTQVIPLRS-AWVMSVAFAQSGNFVACGGM---DNMCTVYDLNNR 1766 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~-DGtIrVWDl~Tgk~l~ti~~Ht-~~ItsLafSPdg~~LaSGS~---DGtIrVWDl~t~ 1766 (2004)
..+|++++|+|||++||+++. ||+++||++.+++.. .+..+. ..+.++.|+|| +.+++++. +....+|.++..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 999999998655544 444444 68999999999 77777665 455677766541
Q ss_pred CCCCcceEEEEEecCccceeeeEEe--CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV 1844 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~ 1844 (2004)
+.. ... .+.... ......|+ .+..+++.+.++.+.+||+.+++... +.. +.. .+++|+|||+++++++.
T Consensus 99 ~~g-~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-l~~-~~~--~~~~~spDG~~la~~~~ 169 (582)
T 3o4h_A 99 RPG-EEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-LAR-LPG--FGFVSDIRGDLIAGLGF 169 (582)
T ss_dssp STT-CCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-EEE-ESS--CEEEEEEETTEEEEEEE
T ss_pred CCC-ccc---cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-eec-CCC--ceEEECCCCCEEEEEEE
Confidence 100 111 121111 12233444 33445666666666699999886543 322 222 78999999999998887
Q ss_pred C----CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC--eEEEEEccCCceeEEEcCCCCCCCeEEEE-
Q psy8748 1845 D----KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK--TARLFDIRADQQIATYLPPNKNSGFTSCA- 1917 (2004)
Q Consensus 1845 D----GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG--tIrIWDLrtgk~i~t~~~~~~~s~ItsLa- 1917 (2004)
+ +.|++||+.+++.. .+..|...+..++|+|||+.|+++..+| .|++||+.+++.. .. ..+...+..++
T Consensus 170 ~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~--~~~~~~~~~~~~ 245 (582)
T 3o4h_A 170 FGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL--ELPSKDFSSYRP 245 (582)
T ss_dssp EETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC--CCSCSHHHHHCC
T ss_pred cCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec--cCCCcChhhhhh
Confidence 7 78999999888754 6678888899999999999999888888 8999999988776 33 33444455555
Q ss_pred -------EcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCe---EEEEECCC
Q psy8748 1918 -------VSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQF---VKVWQESN 1983 (2004)
Q Consensus 1918 -------fSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGt---IrIWdlst 1983 (2004)
|+|||.++++++.||.+++|++ ++... .+.+.|.+++|+ +++++++++.+.. +.+|+..+
T Consensus 246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999999999999999999999 66554 345779999999 9999999887744 66666554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.9e-17 Score=191.51 Aligned_cols=271 Identities=8% Similarity=0.077 Sum_probs=186.2
Q ss_pred CCeEEEEEC--CCCceEE-EeeCCCCceEEEEEecCCCEEEEeec---CCeEEEEEcCCCCCCCcceEEEEEecCcccee
Q psy8748 1713 DGKLIIWDT--WTGNKTQ-VIPLRSAWVMSVAFAQSGNFVACGGM---DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786 (2004)
Q Consensus 1713 DGtIrVWDl--~Tgk~l~-ti~~Ht~~ItsLafSPdg~~LaSGS~---DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vs 1786 (2004)
++.|.+|++ .+++... ....+...+..++|+|+|+ +++++. ++.|.+|++..+ ..........+...+.
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g----~~~~~~~~~~~~~~p~ 89 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ----TAHKLNTVVAPGTPPA 89 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT----EEEEEEEEEEESCCCS
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC----cEEEeeeeecCCCCCE
Confidence 456777755 4565433 2233456678899999999 555544 689999999654 2334444455667788
Q ss_pred eeEEeCCCc-EEEee-cCCeEEEEECCC-Cce--eEEeecc--------ccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1787 SCRFIDDTT-LLTGS-GDMKIVTWNLET-GQR--IHEVAQA--------HIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1787 svafsdd~~-LlSgS-~DGtI~IWDl~t-g~~--i~~il~~--------h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
.+++++++. +++++ .++.|.+||+.. +.. +...... ....+.+++|+|+|+.+++...++.|++||+
T Consensus 90 ~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 90 YVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEE
Confidence 889987654 66666 679999999963 322 2122111 1224889999999996666666889999999
Q ss_pred C-CCeEE--EEEec-CCCCeEEEEEeCCCCEEEE-EECCCeEEEEEccC--Ccee--EEEcCCCC----CCCeEEEEEcC
Q psy8748 1854 R-EKKCV--QTFFG-HEADVNSVCFHPSGLAFAT-GSEDKTARLFDIRA--DQQI--ATYLPPNK----NSGFTSCAVSS 1920 (2004)
Q Consensus 1854 r-s~k~I--~tl~~-h~s~ItsIafSPdg~~LaS-gS~DGtIrIWDLrt--gk~i--~t~~~~~~----~s~ItsLafSP 1920 (2004)
. +++.. ..+.. ....+..++|+|+|+++++ +..++.|.+|++.. ++.. ........ ...+..++|+|
T Consensus 170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 8 45432 22222 2346788999999997666 45678999999874 4432 22211111 13578899999
Q ss_pred CCCEEE-EEeCCCeEEEEECC---CCeeeEEEccCCCCeEEEEEcCCCCEEEEEECC-CeEEEEEC--CCCeEEE
Q psy8748 1921 SGRYIF-CGSDDNNVHVWDLL---KTTHNGVLSGHENRVTSISLSPNGMALVTSSWD-QFVKVWQE--SNTIVWK 1988 (2004)
Q Consensus 1921 dG~~La-SGSsDGsIrIWDL~---tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D-GtIrIWdl--stg~l~k 1988 (2004)
+|++|+ ++..++.|.+|++. ..+.+..+..+...+.+++|+|||++|++++.+ +.|.+|++ .+++...
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 999885 45568999999997 335566666677778999999999999888765 89999954 5665443
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-17 Score=192.87 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=183.0
Q ss_pred eeEEEEeCCCCEEE-EEeCCCeEEEEECCCCceEEEeeCCC-----CceEEEEEecCCCEEEEee------------cCC
Q psy8748 1695 VNSVHYSGDSRHCV-SGSLDGKLIIWDTWTGNKTQVIPLRS-----AWVMSVAFAQSGNFVACGG------------MDN 1756 (2004)
Q Consensus 1695 VtsLaFSPDG~~LA-SGS~DGtIrVWDl~Tgk~l~ti~~Ht-----~~ItsLafSPdg~~LaSGS------------~DG 1756 (2004)
+.+++|+|+|++++ +++.++.|.+||+.+++....+.... ..+.+++|+|+|+++++++ .++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 56799999998764 55567899999999999887776421 2577899999999988886 579
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEeecCCeEEEEECCCCceeEEeeccc-cCCeEEEEECC
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGSGDMKIVTWNLETGQRIHEVAQAH-IGDVVSISLSP 1834 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h-~~~ItsLafSP 1834 (2004)
.|.+||+.++ +....+.. ...+..+.|++++. ++++ ++.|++||+.+++....+.... .. .+.|+|
T Consensus 116 ~i~v~d~~~~------~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~s~ 183 (337)
T 1pby_B 116 RVALYDAETL------SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEA---ETYAQP 183 (337)
T ss_dssp EEEEEETTTT------EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTT---TTBCCC
T ss_pred eEEEEECCCC------cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCC---CceeCC
Confidence 9999999754 23333333 34567788886654 6665 6899999999988765543222 12 237889
Q ss_pred CCCEEEEEECCC------------------------eEEEEECCCCeEE-EEEecCCCCeEEEEEeCCCCEEEEEECCCe
Q psy8748 1835 DGQYFVTGSVDK------------------------SCKLWDFREKKCV-QTFFGHEADVNSVCFHPSGLAFATGSEDKT 1889 (2004)
Q Consensus 1835 dg~~LaSGS~DG------------------------sIrIWDlrs~k~I-~tl~~h~s~ItsIafSPdg~~LaSgS~DGt 1889 (2004)
+++.+++++.++ .|.+||..+++.. ..+..+...+.+++|+|+|++++++ ++.
T Consensus 184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~ 261 (337)
T 1pby_B 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV 261 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE
T ss_pred CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe
Confidence 888766554332 4789999988764 2334566678899999999999888 799
Q ss_pred EEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC
Q psy8748 1890 ARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951 (2004)
Q Consensus 1890 IrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH 1951 (2004)
|.+||+.+++....+... ..+.+++|+|+|+++++++.++.|++||+.+++.+..+..+
T Consensus 262 v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 262 LESFDLEKNASIKRVPLP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEEETTTTEEEEEEECS---SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EEEEECCCCcCcceecCC---CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 999999998887776432 35678999999999999999999999999999988877644
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-17 Score=192.94 Aligned_cols=279 Identities=11% Similarity=0.163 Sum_probs=193.4
Q ss_pred CCEEEEEe----CCCeEEEEEC--CCCceEEEeeCCCCceEEEEEecCCCEEEEeecC----CeEEEEEcCCCCCCCcce
Q psy8748 1704 SRHCVSGS----LDGKLIIWDT--WTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD----NMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1704 G~~LASGS----~DGtIrVWDl--~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D----GtIrVWDl~t~~~~~~~k 1773 (2004)
..+++.|+ .++.|.+|++ .+++.......+...+..++|+|+|++|++++.+ |.|.+|+++... ....
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~--g~~~ 90 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK--GTLH 90 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT--TEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC--CcEE
Confidence 34555554 3568999865 5565543332266778889999999999998875 799999987531 1233
Q ss_pred EEEEEecCccceeeeEEeCCCcEEEee-cCCeEEEEECCCCceeEEee-----c--------cccCCeEEEEECCCCCEE
Q psy8748 1774 VIRELLGYEGFLSSCRFIDDTTLLTGS-GDMKIVTWNLETGQRIHEVA-----Q--------AHIGDVVSISLSPDGQYF 1839 (2004)
Q Consensus 1774 ~i~sl~gh~~~Vssvafsdd~~LlSgS-~DGtI~IWDl~tg~~i~~il-----~--------~h~~~ItsLafSPdg~~L 1839 (2004)
.+.....+......+++ ++..+++++ .++.|.+|++.....+.... . .+...+.+++|+|+|+++
T Consensus 91 ~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred EeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 44444445556666777 666666655 68899999997544321110 0 112345889999999977
Q ss_pred EEEEC-CCeEEEEECCCCe-------E------EEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCcee--E
Q psy8748 1840 VTGSV-DKSCKLWDFREKK-------C------VQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQI--A 1902 (2004)
Q Consensus 1840 aSGS~-DGsIrIWDlrs~k-------~------I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i--~ 1902 (2004)
++++. ++.|.+|++.... . ......+...+.+++|+|+|+++++++ .++.|.+||+.+++.. .
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~ 249 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ 249 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence 76664 7899999887433 1 122234456688999999999888777 5899999999876542 2
Q ss_pred EEc-CCCCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECC--CCe--eeEEEccCCCCeEEEEEcCCCCEEEEEE-CCC
Q psy8748 1903 TYL-PPNKNSGFTSCAVSSSGRYIFCGSDD--NNVHVWDLL--KTT--HNGVLSGHENRVTSISLSPNGMALVTSS-WDQ 1974 (2004)
Q Consensus 1903 t~~-~~~~~s~ItsLafSPdG~~LaSGSsD--GsIrIWDL~--tge--~l~tL~gHs~~VtsLaFSPDg~~LaSgS-~DG 1974 (2004)
... ...+......++|+|||++|++++.+ +.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence 221 22333456899999999999777664 899999985 444 4444444 56788999999999998888 679
Q ss_pred eEEEEECC--CCeE
Q psy8748 1975 FVKVWQES--NTIV 1986 (2004)
Q Consensus 1975 tIrIWdls--tg~l 1986 (2004)
.|.+|+++ +++.
T Consensus 329 ~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 329 VIQIFERDQATGLL 342 (361)
T ss_dssp EEEEEEECTTTCCE
T ss_pred CEEEEEEECCCCcE
Confidence 99997654 6654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-18 Score=193.59 Aligned_cols=240 Identities=14% Similarity=0.060 Sum_probs=181.2
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCC-CceEEEeeCC-CCceEEEEEecCCCEEEEee--cCCeEEEE
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWT-GNKTQVIPLR-SAWVMSVAFAQSGNFVACGG--MDNMCTVY 1761 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~T-gk~l~ti~~H-t~~ItsLafSPdg~~LaSGS--~DGtIrVW 1761 (2004)
..+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|+++++++++ .++...+|
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence 35667899999999999999999987 78999999999 8777666665 46789999999999999998 44566666
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EE-EeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LL-TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYF 1839 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-Ll-SgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~L 1839 (2004)
.++... .....+..+ ..+..+.|++++. ++ ++..++.+.+|+++...........+...+.+++|+|+++++
T Consensus 114 ~~~~~~-----~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 187 (297)
T 2ojh_A 114 LLPSTG-----GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWI 187 (297)
T ss_dssp EEETTC-----CCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEE
T ss_pred EEECCC-----CceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEE
Confidence 654321 112222222 3477788886654 44 677899999998643222223345677889999999999988
Q ss_pred EEEE-CCCeEEEEECC-CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC-----------CeEEEEEccCCceeEEEcC
Q psy8748 1840 VTGS-VDKSCKLWDFR-EKKCVQTFFGHEADVNSVCFHPSGLAFATGSED-----------KTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1840 aSGS-~DGsIrIWDlr-s~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D-----------GtIrIWDLrtgk~i~t~~~ 1906 (2004)
++++ .++.+++|+++ .+.....+..+...+.+++|+|+|++|++++.+ +.|.+||+.+++.......
T Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 267 (297)
T 2ojh_A 188 YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL 267 (297)
T ss_dssp EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence 8776 58899999886 555667777888889999999999999888765 5699999998776444432
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCC
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDDN 1932 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsDG 1932 (2004)
..+...+.+++|+|+|++|++++.+.
T Consensus 268 ~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 268 FGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCCcccccceECCCCCEEEEEEecc
Confidence 34456788899999999998887653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-17 Score=188.92 Aligned_cols=273 Identities=9% Similarity=-0.001 Sum_probs=195.8
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCC-CceEEEEEecCCCEEE-EeecCCeEEEEEcCCCCCCCcceE
Q psy8748 1697 SVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS-AWVMSVAFAQSGNFVA-CGGMDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht-~~ItsLafSPdg~~La-SGS~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
.+++++++.++++++.++.|++||..+++....+..+. ..+..++|+|+++.++ ++..++.|.+||+.++ +.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~------~~ 77 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC------KN 77 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT------EE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC------cE
Confidence 45677888999999999999999999999888887554 2578999999998654 5567899999999764 22
Q ss_pred EEEEec-C-----ccceeeeEEeCCC-cEEEeecC------------CeEEEEECCCCceeEEe-eccccCCeEEEEECC
Q psy8748 1775 IRELLG-Y-----EGFLSSCRFIDDT-TLLTGSGD------------MKIVTWNLETGQRIHEV-AQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1775 i~sl~g-h-----~~~Vssvafsdd~-~LlSgS~D------------GtI~IWDl~tg~~i~~i-l~~h~~~ItsLafSP 1834 (2004)
...... + ...+..+.|++++ .+++++.+ +.|.+||+.+++..... ...+...+.+++|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD 157 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC
Confidence 333322 1 2336778888655 56666654 89999999885433211 112344688999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCCC------------------------CeEEEEEeCCCCE----------
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA------------------------DVNSVCFHPSGLA---------- 1880 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s------------------------~ItsIafSPdg~~---------- 1880 (2004)
+|+ +++++ +.|++||..+++.+..+..+.. ...++++++++..
T Consensus 158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999 66654 4599999999988777653320 2345666654421
Q ss_pred -EEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEE
Q psy8748 1881 -FATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS-SGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI 1958 (2004)
Q Consensus 1881 -LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP-dG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsL 1958 (2004)
+.....++.+++|++. .....+..++|+| +|++++++ ++.|++||+.+++....+.. ...+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~ 300 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFA-----------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCV 300 (349)
T ss_dssp EEEEETTTCCEEEEEEE-----------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEE
T ss_pred EEEEeccCCcEEecccc-----------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccce
Confidence 1122233444444432 1335678999999 99999988 88999999999998887763 3457899
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1959 SLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1959 aFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
+|+|+|++|++++.++.|++||..+++....++.
T Consensus 301 ~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 301 AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 9999999999888899999999999877666654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-16 Score=187.13 Aligned_cols=247 Identities=15% Similarity=0.067 Sum_probs=170.0
Q ss_pred ceeEEEEeCCCCEEE-EEeCCCeEEEEECCCCceEEEeeCCC------CceEEEEEecCCCEEEEeecC-----------
Q psy8748 1694 KVNSVHYSGDSRHCV-SGSLDGKLIIWDTWTGNKTQVIPLRS------AWVMSVAFAQSGNFVACGGMD----------- 1755 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LA-SGS~DGtIrVWDl~Tgk~l~ti~~Ht------~~ItsLafSPdg~~LaSGS~D----------- 1755 (2004)
.+..++|+|+|++++ ++..++.|.+||+.+++....+..+. ..+.+++|+|+|+++++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 356899999998665 55568999999999998887776433 237889999999999998865
Q ss_pred -CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccC---------
Q psy8748 1756 -NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIG--------- 1825 (2004)
Q Consensus 1756 -GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~--------- 1825 (2004)
+.|.+||+.++... ....... +...+.++.|++++.+++++. .|++||..+++....+.....+
T Consensus 124 ~~~i~~~d~~~~~~~---~~~~~~~-~~~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
T 1jmx_B 124 PPRLEVFSTADGLEA---KPVRTFP-MPRQVYLMRAADDGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDV 197 (349)
T ss_dssp CCEEEEEEGGGGGGB---CCSEEEE-CCSSCCCEEECTTSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBC
T ss_pred CCeEEEEECCCcccc---ceeeecc-CCCcccceeECCCCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccc
Confidence 89999999764321 1122222 233577888987766666543 4999999998876544222100
Q ss_pred --------------CeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeE-EEEEecCCCCeEEEEEeC-CCCEEEEEECCC
Q psy8748 1826 --------------DVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKC-VQTFFGHEADVNSVCFHP-SGLAFATGSEDK 1888 (2004)
Q Consensus 1826 --------------~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~-I~tl~~h~s~ItsIafSP-dg~~LaSgS~DG 1888 (2004)
...++++++++....... ....+..+|..+++. ...+..+...+.+++|+| ++++++++ ++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~ 275 (349)
T 1jmx_B 198 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN 275 (349)
T ss_dssp CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES
T ss_pred eeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC
Confidence 234566665442110000 011122245544432 112233566788999999 99999888 88
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH 1951 (2004)
.|.+||+.+++....+... ..+.+++|+|+|++|++++.++.|++||+.+++.+..+...
T Consensus 276 ~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 276 RLAKYDLKQRKLIKAANLD---HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEEETTTTEEEEEEECS---SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred eEEEEECccCeEEEEEcCC---CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 9999999999887776432 34678999999999998888999999999999988877644
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=216.50 Aligned_cols=292 Identities=9% Similarity=0.029 Sum_probs=195.6
Q ss_pred ceeEEEEeCCCCEEEEEeC---------CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1694 KVNSVHYSGDSRHCVSGSL---------DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~---------DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
.|.+++|||||++|++++. ++.|++||+.+++.+.... ....+.+++|+|||+.|+.+. ++.|++|++.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4779999999999998876 7899999999887621111 135688999999999999885 7899999997
Q ss_pred CCCCCCcc---eEEEEEecCccc---------eeeeEEeCCC-cEEEeecCC----------------------------
Q psy8748 1765 NRDSTGAA---KVIRELLGYEGF---------LSSCRFIDDT-TLLTGSGDM---------------------------- 1803 (2004)
Q Consensus 1765 t~~~~~~~---k~i~sl~gh~~~---------Vssvafsdd~-~LlSgS~DG---------------------------- 1803 (2004)
++...... .......++... ...+.|++++ .+++++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 65321000 000011122211 2478899765 466665442
Q ss_pred ------eEEEEECCCCcee--EEe-----eccccCCeEEEEECCCCCEEEEEECC----CeEEEEE----CCCCeEEEEE
Q psy8748 1804 ------KIVTWNLETGQRI--HEV-----AQAHIGDVVSISLSPDGQYFVTGSVD----KSCKLWD----FREKKCVQTF 1862 (2004)
Q Consensus 1804 ------tI~IWDl~tg~~i--~~i-----l~~h~~~ItsLafSPdg~~LaSGS~D----GsIrIWD----lrs~k~I~tl 1862 (2004)
.|++||+.+++.. ..+ +.+|...+.+++|+||++++++.... ..|.+|| ..+++....+
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 7899999987642 111 23567789999999998777664432 2488999 7777654444
Q ss_pred ----ecCCCCeE-----EEEEeCCCCEEEE--EECCC--eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1863 ----FGHEADVN-----SVCFHPSGLAFAT--GSEDK--TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1863 ----~~h~s~It-----sIafSPdg~~LaS--gS~DG--tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
.+|...+. .+.|+|||+.++. +..+| .|.+||+.+++ ...+. .+...+..+.++ +++.|+..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt--~~~~~v~~~~~~-d~~~i~~~~ 374 (719)
T 1z68_A 299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQIT--SGKWEAINIFRV-TQDSLFYSS 374 (719)
T ss_dssp EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECS--CSSSCEEEEEEE-CSSEEEEEE
T ss_pred ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecc--cCceEEEEEEEE-eCCEEEEEE
Confidence 35666666 8899999996554 44555 57777877665 33332 233457777777 888777766
Q ss_pred CC-----CeEEEEECCC--Ce-eeEEEc----cCCCCeEEEEEcCCCCEEEEE-ECC--CeEEEEECCCCeEEEEEE
Q psy8748 1930 DD-----NNVHVWDLLK--TT-HNGVLS----GHENRVTSISLSPNGMALVTS-SWD--QFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1930 sD-----GsIrIWDL~t--ge-~l~tL~----gHs~~VtsLaFSPDg~~LaSg-S~D--GtIrIWdlstg~l~k~Ik 1991 (2004)
.+ +..++|.+.. +. ....+. +|...+..+.|++++++++.. +.+ ..+.+|++.+++..+.+.
T Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 375 NEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred ecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 65 7888887753 32 123333 266778899999998877643 333 578999998886544444
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=191.99 Aligned_cols=289 Identities=12% Similarity=0.060 Sum_probs=198.6
Q ss_pred ccccccccccceeE-----EEEeCCCCEEEEEeC-CC--eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC
Q psy8748 1684 PKKSLKGHINKVNS-----VHYSGDSRHCVSGSL-DG--KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD 1755 (2004)
Q Consensus 1684 pi~sL~GHt~~Vts-----LaFSPDG~~LASGS~-DG--tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D 1755 (2004)
....+..|...... .+|||||++|+.++. +| .|.+||+.+++.......+...+....|+|||+.|+.++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 34556666665555 899999999998887 66 48899999998877777776666678899999999999999
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE--eCCCcEEE-----------------------eecCCeEEEEEC
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF--IDDTTLLT-----------------------GSGDMKIVTWNL 1810 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf--sdd~~LlS-----------------------gS~DGtI~IWDl 1810 (2004)
+.|++||+.+++ .......+...+....+ ++++.+++ ...++.|++||+
T Consensus 102 ~~l~~~d~~~g~------~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 175 (388)
T 3pe7_A 102 RNLMRVDLATLE------ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL 175 (388)
T ss_dssp TEEEEEETTTCC------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET
T ss_pred CeEEEEECCCCc------ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC
Confidence 999999998653 12222233333333333 44444443 224578999999
Q ss_pred CCCceeEEeeccccCCeEEEEECC-CCCEEEEEECC------CeEEEEECCCCeEEEEEecCC--CCeEEEEEeCCCCEE
Q psy8748 1811 ETGQRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVD------KSCKLWDFREKKCVQTFFGHE--ADVNSVCFHPSGLAF 1881 (2004)
Q Consensus 1811 ~tg~~i~~il~~h~~~ItsLafSP-dg~~LaSGS~D------GsIrIWDlrs~k~I~tl~~h~--s~ItsIafSPdg~~L 1881 (2004)
.+++... + ..+...+..++|+| +|+.++.+..+ ..|.++|...+.. ..+..+. ..+...+|+|||+.|
T Consensus 176 ~~g~~~~-l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l 252 (388)
T 3pe7_A 176 KTGESTV-I-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSAL 252 (388)
T ss_dssp TTCCEEE-E-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCE
T ss_pred CCCceEE-e-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEE
Confidence 9887542 2 35566789999999 99998887754 3788888876543 3443443 357788999999977
Q ss_pred EEEEC-CC----eEEEEEccCCceeEEEcCCCCCC---CeEEEEEcCCCCEEEEE---------eCCCeEEEEECCCCee
Q psy8748 1882 ATGSE-DK----TARLFDIRADQQIATYLPPNKNS---GFTSCAVSSSGRYIFCG---------SDDNNVHVWDLLKTTH 1944 (2004)
Q Consensus 1882 aSgS~-DG----tIrIWDLrtgk~i~t~~~~~~~s---~ItsLafSPdG~~LaSG---------SsDGsIrIWDL~tge~ 1944 (2004)
+..+. ++ .|++||+.+++............ ......|+|||+.|+.. ..++.|++||+.+++.
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 253 VYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp EEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred EEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 65443 22 39999999887533222121000 01113699999988854 4567899999988765
Q ss_pred eEEEccCCC-----------CeEEEEEcCCCCEEEEEE-CCCeEEEEECC
Q psy8748 1945 NGVLSGHEN-----------RVTSISLSPNGMALVTSS-WDQFVKVWQES 1982 (2004)
Q Consensus 1945 l~tL~gHs~-----------~VtsLaFSPDg~~LaSgS-~DGtIrIWdls 1982 (2004)
..+..|.. .+.+++|+|||+.|+.++ .+|...+|.++
T Consensus 333 -~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 333 -HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp -EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred -EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 44545555 578899999999888766 46777777554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-15 Score=181.41 Aligned_cols=266 Identities=12% Similarity=0.166 Sum_probs=184.4
Q ss_pred cccceeEEEEeCCCCEEEEEeCC----CeEEEEECCC--Cce--EEEeeCCCCceEEEEEecCCCEEEEee-cCCeEEEE
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLD----GKLIIWDTWT--GNK--TQVIPLRSAWVMSVAFAQSGNFVACGG-MDNMCTVY 1761 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~D----GtIrVWDl~T--gk~--l~ti~~Ht~~ItsLafSPdg~~LaSGS-~DGtIrVW 1761 (2004)
|...+..++|+|||++|++++.+ |.|.+|++.. |+. +.....+......+++ +++++++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 67788899999999999998876 7999998765 433 3344445666777888 788777665 57899999
Q ss_pred EcCCCCCCCcceEEEEEec--------CccceeeeEEeCCCc-EEEee-cCCeEEEEECCCCce------e------EEe
Q psy8748 1762 DLNNRDSTGAAKVIRELLG--------YEGFLSSCRFIDDTT-LLTGS-GDMKIVTWNLETGQR------I------HEV 1819 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~g--------h~~~Vssvafsdd~~-LlSgS-~DGtI~IWDl~tg~~------i------~~i 1819 (2004)
++................+ +...+.++.|++++. +++++ .++.|.+|++..... + ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975432222211111111 122346788887664 55544 578999998875442 1 122
Q ss_pred eccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeE--EEEEe---cCCCCeEEEEEeCCCCEEEEEECC--CeEE
Q psy8748 1820 AQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKC--VQTFF---GHEADVNSVCFHPSGLAFATGSED--KTAR 1891 (2004)
Q Consensus 1820 l~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~--I~tl~---~h~s~ItsIafSPdg~~LaSgS~D--GtIr 1891 (2004)
.......+..++|+|+|+++++++ .++.|.+||+.++.. +..+. .+.....+++|+|+|++++++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 234455688999999999888887 689999999987754 23332 233456899999999998777665 8999
Q ss_pred EEEcc--CCc--eeEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEC--CCCeeeEEE-ccCCCCeEEEEEc
Q psy8748 1892 LFDIR--ADQ--QIATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDL--LKTTHNGVL-SGHENRVTSISLS 1961 (2004)
Q Consensus 1892 IWDLr--tgk--~i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL--~tge~l~tL-~gHs~~VtsLaFS 1961 (2004)
+|++. +++ .+..+.. ...+..++|+|+|++|++++ .++.|.+|++ .+++..... ..+...+.|+.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99996 444 2333322 34577899999999998887 5789999654 566655443 2345678999885
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=203.54 Aligned_cols=226 Identities=15% Similarity=0.120 Sum_probs=161.4
Q ss_pred cceeEEEEeCCCCEEEEEeC---CCeEEEEECC---CCceEEEeeCCCCceEEEEEecCCCE-EEEeecCCeEEEEEcCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSL---DGKLIIWDTW---TGNKTQVIPLRSAWVMSVAFAQSGNF-VACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~---DGtIrVWDl~---Tgk~l~ti~~Ht~~ItsLafSPdg~~-LaSGS~DGtIrVWDl~t 1765 (2004)
..|.+++|+|| +.+++++. +....+|.+. .+... .+.... .+...+|+|+|+. +++.+.++.+.+||+.+
T Consensus 65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~ 141 (582)
T 3o4h_A 65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDG 141 (582)
T ss_dssp SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEET
T ss_pred cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccC
Confidence 57889999999 77777765 4545555433 23333 333222 3446788888863 33334444566999976
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecC----CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGD----MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~D----GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
++ . ..+..+.. ..+.|++++ .+++++.+ +.|++||+.+++.. .+..+.+.+..++|+|||+.|+
T Consensus 142 g~------~-~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l~~~~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 142 GG------L-RELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VFDSGEGSFSSASISPGMKVTA 210 (582)
T ss_dssp TE------E-EEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE--EECCSSCEEEEEEECTTSCEEE
T ss_pred Cc------E-EEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce--EeecCCCccccceECCCCCEEE
Confidence 42 1 12222222 677787555 46656666 78999999988765 3357778899999999999999
Q ss_pred EEECCC--eEEEEECCCCeEEEEEecCCCCeEEEE--------EeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCC
Q psy8748 1841 TGSVDK--SCKLWDFREKKCVQTFFGHEADVNSVC--------FHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN 1910 (2004)
Q Consensus 1841 SGS~DG--sIrIWDlrs~k~I~tl~~h~s~ItsIa--------fSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~ 1910 (2004)
++..+| .|++||+.+++.. .+..|...+..++ |+|||..+++++.||++++|++ ++... ...
T Consensus 211 ~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-----~~~ 282 (582)
T 3o4h_A 211 GLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-----APQ 282 (582)
T ss_dssp EEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-----CCS
T ss_pred EccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-----cCC
Confidence 888888 8999999998877 7777777777777 9999988999999999999999 55443 122
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCe---EEEEECCC
Q psy8748 1911 SGFTSCAVSSSGRYIFCGSDDNN---VHVWDLLK 1941 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGSsDGs---IrIWDL~t 1941 (2004)
..+.+++|+ +|+++++++.+.. +++||...
T Consensus 283 ~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 283 GNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp SEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 568899999 9999998887744 67777543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.6e-16 Score=191.23 Aligned_cols=290 Identities=11% Similarity=0.089 Sum_probs=198.1
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC----------ceEEE-----eeCCCCceEEEEEecCCCEEE----E
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG----------NKTQV-----IPLRSAWVMSVAFAQSGNFVA----C 1751 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg----------k~l~t-----i~~Ht~~ItsLafSPdg~~La----S 1751 (2004)
+...++.+++++++.++++++.|| +++|+.... ..... ...+...|.+++|+|+|++|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345689999999999999999988 889864211 11111 123566799999999999999 7
Q ss_pred eecCCeEEEEEcCCC-----CCCCcceEEEEEecCccceeeeEEeCC--CcEEEeecCCeEEEEECCCCceeEEeecccc
Q psy8748 1752 GGMDNMCTVYDLNNR-----DSTGAAKVIRELLGYEGFLSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQAHI 1824 (2004)
Q Consensus 1752 GS~DGtIrVWDl~t~-----~~~~~~k~i~sl~gh~~~Vssvafsdd--~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~ 1824 (2004)
|+.|+.|++||+.+. ...........+.+|...+.++.|+++ ..+++++.||.|++||++++..... ..+|.
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~-~~~~~ 192 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA-TLPST 192 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE-EECGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee-ccCCC
Confidence 889999999998753 111122335566778999999999964 5688899999999999998865533 34688
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-------CCeEEEEEeCCCCEEEE-EECCC------eE
Q psy8748 1825 GDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE-------ADVNSVCFHPSGLAFAT-GSEDK------TA 1890 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~-------s~ItsIafSPdg~~LaS-gS~DG------tI 1890 (2004)
..|.+++|+|+|++|++|+.||.|++||.+ ++....+..|. ..|.+++|++++.++++ ++.|| .+
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 899999999999999999999999999998 55555554432 37999999998877654 33443 38
Q ss_pred EEEEccCCc-----eeEEEcCC-----CCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCC---eeeEEEc-------
Q psy8748 1891 RLFDIRADQ-----QIATYLPP-----NKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKT---THNGVLS------- 1949 (2004)
Q Consensus 1891 rIWDLrtgk-----~i~t~~~~-----~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tg---e~l~tL~------- 1949 (2004)
++|++++.+ ....+... ....+...+.+-++.+++++++. .+.|.++..... .....+.
T Consensus 272 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~l 351 (434)
T 2oit_A 272 VMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAEL 351 (434)
T ss_dssp EEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGGGCCBC
T ss_pred EEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEeccccccccc
Confidence 999998652 11222111 11222334444477777776665 445666654321 1011110
Q ss_pred -----cCCCCeEEEEEc---------------CCCCEEEEEECCCeEEEEECCC
Q psy8748 1950 -----GHENRVTSISLS---------------PNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1950 -----gHs~~VtsLaFS---------------PDg~~LaSgS~DGtIrIWdlst 1983 (2004)
+......++++. |-...|..-+.||.+..|.+-.
T Consensus 352 P~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 352 PVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp CBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred cCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 122234444442 1235788888999999998754
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-15 Score=178.99 Aligned_cols=250 Identities=12% Similarity=0.145 Sum_probs=173.2
Q ss_pred ccccceeEEEEeCCCCEEEEEeC---CCeEEEEECCCCc--eEEEeeCCCCceEEEEEecCCCEEEEee-cCCeEEEEEc
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSL---DGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQSGNFVACGG-MDNMCTVYDL 1763 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~---DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPdg~~LaSGS-~DGtIrVWDl 1763 (2004)
.+...+..++|+|||+ +++++. ++.|++||+.+++ .+..+..+...+..++|+|+|+++++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 4556788999999999 555544 6899999997775 3444455677889999999999888887 6799999999
Q ss_pred CCCCCCCcceEEEEEec---------CccceeeeEEeCCCcEEE-eecCCeEEEEECC-CCceeEE--eeccccCCeEEE
Q psy8748 1764 NNRDSTGAAKVIRELLG---------YEGFLSSCRFIDDTTLLT-GSGDMKIVTWNLE-TGQRIHE--VAQAHIGDVVSI 1830 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~g---------h~~~Vssvafsdd~~LlS-gS~DGtI~IWDl~-tg~~i~~--il~~h~~~ItsL 1830 (2004)
.... .......... ....+.++.|++++.+++ ...++.|.+||+. +++.... ........+..+
T Consensus 116 ~~~g---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~ 192 (347)
T 3hfq_A 116 AADG---ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL 192 (347)
T ss_dssp CTTS---CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE
T ss_pred CCCC---CeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE
Confidence 6422 2222222221 122467788886655544 4457899999998 4543211 112233467889
Q ss_pred EECCCCCEEEEE-ECCCeEEEEECCC--CeE--EEEEecCC------CCeEEEEEeCCCCEEE-EEECCCeEEEEEccCC
Q psy8748 1831 SLSPDGQYFVTG-SVDKSCKLWDFRE--KKC--VQTFFGHE------ADVNSVCFHPSGLAFA-TGSEDKTARLFDIRAD 1898 (2004)
Q Consensus 1831 afSPdg~~LaSG-S~DGsIrIWDlrs--~k~--I~tl~~h~------s~ItsIafSPdg~~La-SgS~DGtIrIWDLrtg 1898 (2004)
+|+|+|++++++ ..++.|.+|++.. ++. +..+.... ..+..++|+|+|++++ ++..++.|.+||+...
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 999999976664 5678999999874 443 22333222 3588999999999875 5556899999999732
Q ss_pred ---ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEE--CCCCeee
Q psy8748 1899 ---QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD-NNVHVWD--LLKTTHN 1945 (2004)
Q Consensus 1899 ---k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD-GsIrIWD--L~tge~l 1945 (2004)
+.+..+. .+...+..++|+|+|++|++++.+ +.|.+|+ ..+++..
T Consensus 273 g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 273 GHLTLIQQIS--TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp GCEEEEEEEE--CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CcEEEeEEEe--cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 3333332 223457899999999999888765 8999994 4556554
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.6e-17 Score=210.22 Aligned_cols=277 Identities=11% Similarity=0.052 Sum_probs=197.2
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCC---ceEEEEEecCCCEEEEeec---------CCeEEEEEcC
Q psy8748 1697 SVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSA---WVMSVAFAQSGNFVACGGM---------DNMCTVYDLN 1764 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~---~ItsLafSPdg~~LaSGS~---------DGtIrVWDl~ 1764 (2004)
+++|+|||+++++ +.||.|++||+.+++....+..+.. .+.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 7899999965555 4699999999999998777765543 4899999999999998876 7899999998
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCe-----------------
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDV----------------- 1827 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~I----------------- 1827 (2004)
+++.... ..+ ...+..+.|++++..++...++.|++||+.+++.......++...+
T Consensus 99 ~g~~~~~----~~l---~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 99 NGEFVRG----NEL---PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TTEECCS----SCC---CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CCccccc----eec---CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 7542100 111 2457889999877655545689999999998876532223333222
Q ss_pred EEEEECCCCCEEEEEECCC----------------------------------eEEEEECCCCeEE---E-----EEecC
Q psy8748 1828 VSISLSPDGQYFVTGSVDK----------------------------------SCKLWDFREKKCV---Q-----TFFGH 1865 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS~DG----------------------------------sIrIWDlrs~k~I---~-----tl~~h 1865 (2004)
.+++|+|||++|++++.|. .|++||+.+++.. . .+.+|
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 4899999999999987652 7889999887642 1 12357
Q ss_pred CCCeEEEEEeCCCCEEEEEECC----CeEEEEE----ccCCceeEEEc--CCCCCCCeE-----EEEEcCCCCEEEE--E
Q psy8748 1866 EADVNSVCFHPSGLAFATGSED----KTARLFD----IRADQQIATYL--PPNKNSGFT-----SCAVSSSGRYIFC--G 1928 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSgS~D----GtIrIWD----Lrtgk~i~t~~--~~~~~s~It-----sLafSPdG~~LaS--G 1928 (2004)
...+.+++|+||+++++++... ..|.+|| ..+++...... ...+...+. .+.|+|||+.++. +
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 331 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS 331 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEE
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEE
Confidence 7789999999998777765432 2488899 77665443221 012333344 6789999996554 4
Q ss_pred eCCC--eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCC
Q psy8748 1929 SDDN--NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWD-----QFVKVWQESN 1983 (2004)
Q Consensus 1929 SsDG--sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D-----GtIrIWdlst 1983 (2004)
..+| .|++||+.+++ ...+..+...+..+.++ +++.|+..+.+ +.+++|.+..
T Consensus 332 ~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 332 DKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 4555 57777877666 45566666778888888 88887777665 8889998753
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-14 Score=174.75 Aligned_cols=281 Identities=11% Similarity=0.094 Sum_probs=189.8
Q ss_pred EEEEEeCC--CeEEEEEC--CCCceEEE--ee-CCCCceEEEEEecCCCEEEEeecCCeEEEEEcC-CCCCCCcceEEEE
Q psy8748 1706 HCVSGSLD--GKLIIWDT--WTGNKTQV--IP-LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN-NRDSTGAAKVIRE 1777 (2004)
Q Consensus 1706 ~LASGS~D--GtIrVWDl--~Tgk~l~t--i~-~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~-t~~~~~~~k~i~s 1777 (2004)
++++|+.. +.|.+|++ .+|+.... .. .....+..++|+|+|+++++++.+ .|.+|++. ++. ......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~----~~~~~~ 78 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE----IVHEAS 78 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE----EEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC----EEEeeE
Confidence 35556543 56877754 56654322 21 233468899999999999998887 89999986 432 111111
Q ss_pred EecCccceeeeEEeCCCc---EEEee-------------cCCeEEEEECC-CCceeEEeec---cccCCeEEEEECCCCC
Q psy8748 1778 LLGYEGFLSSCRFIDDTT---LLTGS-------------GDMKIVTWNLE-TGQRIHEVAQ---AHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1778 l~gh~~~Vssvafsdd~~---LlSgS-------------~DGtI~IWDl~-tg~~i~~il~---~h~~~ItsLafSPdg~ 1837 (2004)
.... +....+.+++++. ++++. .+|.+.+|++. .++....+.. .+...+.+++|+|+|+
T Consensus 79 ~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~ 157 (365)
T 1jof_A 79 HPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET 157 (365)
T ss_dssp EECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred eecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence 1111 2345577777665 33443 68999999997 4554322211 2456799999999999
Q ss_pred EEEEEEC-CCeEEEEECC-CCeEE--EEEe--cCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEEcc--CCceeE---EEc
Q psy8748 1838 YFVTGSV-DKSCKLWDFR-EKKCV--QTFF--GHEADVNSVCFHPSGLAFATGSE-DKTARLFDIR--ADQQIA---TYL 1905 (2004)
Q Consensus 1838 ~LaSGS~-DGsIrIWDlr-s~k~I--~tl~--~h~s~ItsIafSPdg~~LaSgS~-DGtIrIWDLr--tgk~i~---t~~ 1905 (2004)
+++++.. ++.|++||+. +++.. ..+. .+...+..++|+|+|+++++++. ++.|.+|++. +++... .+.
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 8888764 6799999998 66543 2333 23567999999999999888775 6899999875 455421 221
Q ss_pred -CCCC----CC------CeEEEE-EcCCCCEEEEEeCCC------eEEEEECC-CCeeeE---EEccCCCCeEEEEEcC-
Q psy8748 1906 -PPNK----NS------GFTSCA-VSSSGRYIFCGSDDN------NVHVWDLL-KTTHNG---VLSGHENRVTSISLSP- 1962 (2004)
Q Consensus 1906 -~~~~----~s------~ItsLa-fSPdG~~LaSGSsDG------sIrIWDL~-tge~l~---tL~gHs~~VtsLaFSP- 1962 (2004)
.+.. .. .+..++ |+|||++|++++.++ .|.+|++. +++... ....+...+..++|+|
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence 1111 11 478899 999999988776432 89999996 566543 2334555677899999
Q ss_pred --CCCEEEEEECC-CeEEEEECCCCeEEEEEEee
Q psy8748 1963 --NGMALVTSSWD-QFVKVWQESNTIVWKVLKVY 1993 (2004)
Q Consensus 1963 --Dg~~LaSgS~D-GtIrIWdlstg~l~k~Ik~~ 1993 (2004)
||++|++++.+ +.|.+|+++... +..+...
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~~-l~~~~~~ 350 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDEF-LHRVARV 350 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETTE-EEEEEEE
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchhh-CceeeEE
Confidence 89999999875 899999998773 3444433
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=7e-15 Score=194.20 Aligned_cols=290 Identities=14% Similarity=0.070 Sum_probs=185.1
Q ss_pred eeEEEEeCCCCEEEEEeCC---------CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1695 VNSVHYSGDSRHCVSGSLD---------GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1695 VtsLaFSPDG~~LASGS~D---------GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
..+++|||||++|+.++.+ +.+.+||+.+++... +..|.+.+...+|||||+.|+.+. ++.|++|+..+
T Consensus 64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~ 141 (740)
T 4a5s_A 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN 141 (740)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC
Confidence 3468999999999998876 567799999987553 566778899999999999998884 68899999876
Q ss_pred CCCCCc---ceEEEEEecCc---------cceeeeEEeCCCc-EEEeecC------------------------------
Q psy8748 1766 RDSTGA---AKVIRELLGYE---------GFLSSCRFIDDTT-LLTGSGD------------------------------ 1802 (2004)
Q Consensus 1766 ~~~~~~---~k~i~sl~gh~---------~~Vssvafsdd~~-LlSgS~D------------------------------ 1802 (2004)
+..... ......+.++. +....+.|++++. ++.++.|
T Consensus 142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA 221 (740)
T ss_dssp SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence 531100 00000111111 1223477886664 5544311
Q ss_pred ------CeEEEEECCC---Cc--eeEEeec-----cccCCeEEEEECCCCCEEEEEECC----CeEEEEECCCCe----E
Q psy8748 1803 ------MKIVTWNLET---GQ--RIHEVAQ-----AHIGDVVSISLSPDGQYFVTGSVD----KSCKLWDFREKK----C 1858 (2004)
Q Consensus 1803 ------GtI~IWDl~t---g~--~i~~il~-----~h~~~ItsLafSPdg~~LaSGS~D----GsIrIWDlrs~k----~ 1858 (2004)
..|++||+.+ ++ ....+.. ++...+..++|+|||+.++..... ..|++||+.+++ +
T Consensus 222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~ 301 (740)
T 4a5s_A 222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (740)
T ss_dssp TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence 1588899988 73 2223321 366779999999999976665432 379999998876 2
Q ss_pred E--EEE--ecCCCCeE-----EEEEeCCCCEEE-EEEC-CC--eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEE
Q psy8748 1859 V--QTF--FGHEADVN-----SVCFHPSGLAFA-TGSE-DK--TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1859 I--~tl--~~h~s~It-----sIafSPdg~~La-SgS~-DG--tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~L 1925 (2004)
. ..+ ..+...+. ...|+|||+.++ ..+. +| .|++||..++.... +. .+ ...+..+.. ++++.|
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT-~g-~~~v~~~~~-~d~~~i 377 (740)
T 4a5s_A 302 LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-IT-KG-TWEVIGIEA-LTSDYL 377 (740)
T ss_dssp CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SC-CS-SSCEEEEEE-ECSSEE
T ss_pred eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cc-cC-CEEEEEEEE-EeCCEE
Confidence 1 111 34555544 788999999876 5553 44 58888887665442 22 22 344555432 446665
Q ss_pred EEEeCC-----C--eEEEEECCCCeeeEEEcc----CCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEE
Q psy8748 1926 FCGSDD-----N--NVHVWDLLKTTHNGVLSG----HENRVTSISLSPNGMALVTSSWD---QFVKVWQESNTIVWKVL 1990 (2004)
Q Consensus 1926 aSGSsD-----G--sIrIWDL~tge~l~tL~g----Hs~~VtsLaFSPDg~~LaSgS~D---GtIrIWdlstg~l~k~I 1990 (2004)
+..+.. + .|+..++..+.....+.. ....+..+.|+|++++++..... ..+.+++..+++....+
T Consensus 378 ~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 378 YYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp EEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 544433 3 455555544433323432 24578999999999987665433 47888898887654444
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-15 Score=186.01 Aligned_cols=269 Identities=16% Similarity=0.132 Sum_probs=186.6
Q ss_pred CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC-----CcceE----EEEEecCccc
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST-----GAAKV----IRELLGYEGF 1784 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~-----~~~k~----i~sl~gh~~~ 1784 (2004)
+.+++|+... . .....+..+++++++.++++++.+| +++|+....... ..... ......+...
T Consensus 23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 4688886421 1 2344678999999999999999888 899876421100 00010 0112235667
Q ss_pred eeeeEEeCCC-cEE----EeecCCeEEEEECCCC--------cee--EEeeccccCCeEEEEECCC-CCEEEEEECCCeE
Q psy8748 1785 LSSCRFIDDT-TLL----TGSGDMKIVTWNLETG--------QRI--HEVAQAHIGDVVSISLSPD-GQYFVTGSVDKSC 1848 (2004)
Q Consensus 1785 Vssvafsdd~-~Ll----SgS~DGtI~IWDl~tg--------~~i--~~il~~h~~~ItsLafSPd-g~~LaSGS~DGsI 1848 (2004)
+.+++|++++ .++ +|+.|+.|++||+.++ +.+ .....+|...|.+++|+|+ +++|++++.||.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 9999999655 466 5778999999998754 111 2445678999999999997 8899999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCC-----CCCCeEEEEEcCCCC
Q psy8748 1849 KLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN-----KNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1849 rIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~-----~~s~ItsLafSPdG~ 1923 (2004)
++||++++..+....+|...|.+++|+|+|++|++|+.||.|++||.+ ++....+..+. +...+.+++|++++.
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~ 253 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV 253 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence 999999998777777889999999999999999999999999999998 55555553322 223789999999888
Q ss_pred EEEEE-eCCC------eEEEEECCCCe-----eeEEEc-------cCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCC
Q psy8748 1924 YIFCG-SDDN------NVHVWDLLKTT-----HNGVLS-------GHENRVTSISLSPNGMALVTSSW-DQFVKVWQESN 1983 (2004)
Q Consensus 1924 ~LaSG-SsDG------sIrIWDL~tge-----~l~tL~-------gHs~~VtsLaFSPDg~~LaSgS~-DGtIrIWdlst 1983 (2004)
++++. +.+| .+++|++.+.. ....+. +...+-..+.+-++.+++++++. .+.|.+....+
T Consensus 254 ~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~ 333 (434)
T 2oit_A 254 FAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS 333 (434)
T ss_dssp EEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred EEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence 77653 3443 38999997642 111111 12222233444467677666554 56678877654
Q ss_pred C-eEEEEEE
Q psy8748 1984 T-IVWKVLK 1991 (2004)
Q Consensus 1984 g-~l~k~Ik 1991 (2004)
. ..|....
T Consensus 334 ~~~~~~~~~ 342 (434)
T 2oit_A 334 DQINWESWL 342 (434)
T ss_dssp TSSCEEEEE
T ss_pred CCCccEEEe
Confidence 2 2355443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=180.43 Aligned_cols=279 Identities=11% Similarity=0.015 Sum_probs=187.2
Q ss_pred ccceeEEEEeCCCCEEEEEeCC---CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLD---GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS 1768 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~D---GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~ 1768 (2004)
...+.+++|+|||++|+.+..+ ..|++||+.+++.......+......+.|+|+|+.|+.++.++.|++|++.++.
T Consensus 35 ~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~- 113 (396)
T 3c5m_A 35 RNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE- 113 (396)
T ss_dssp CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC-
T ss_pred ceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC-
Confidence 3447889999999998877543 478999998887655434333333347899999999999999999999987653
Q ss_pred CCcceEEEEEecCccceee-------------------eEEeCCC-cEEEe-----ecCCeEEEEECCCCceeEEeeccc
Q psy8748 1769 TGAAKVIRELLGYEGFLSS-------------------CRFIDDT-TLLTG-----SGDMKIVTWNLETGQRIHEVAQAH 1823 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~~~Vss-------------------vafsdd~-~LlSg-----S~DGtI~IWDl~tg~~i~~il~~h 1823 (2004)
.. .....+...... +.+++++ .++.+ ..++.|++||+.+++..... .+
T Consensus 114 ---~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~ 186 (396)
T 3c5m_A 114 ---EQ--VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH--QD 186 (396)
T ss_dssp ---EE--EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EE
T ss_pred ---cE--EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec--cC
Confidence 11 111112221111 2233332 22222 45678999999988764332 46
Q ss_pred cCCeEEEEECC-CCCEEEEEECC------CeEEEEECCCCeEEEEEecC--CCCeEEEEEeCCCCEEEEEECC-----Ce
Q psy8748 1824 IGDVVSISLSP-DGQYFVTGSVD------KSCKLWDFREKKCVQTFFGH--EADVNSVCFHPSGLAFATGSED-----KT 1889 (2004)
Q Consensus 1824 ~~~ItsLafSP-dg~~LaSGS~D------GsIrIWDlrs~k~I~tl~~h--~s~ItsIafSPdg~~LaSgS~D-----Gt 1889 (2004)
...+..+.|+| +++.++..+.+ ..|.+||+..++.. .+..+ ...+..++|+|+|++|+.++.+ +.
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV 265 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccce
Confidence 67789999999 78877776644 36889998765533 33233 2357889999999987776544 45
Q ss_pred EEEEEccCCceeEEEcCCCCCCCeEEEEEcC-CCCEEEEEe----------------CCCeEEEEECCCCeeeEEEccCC
Q psy8748 1890 ARLFDIRADQQIATYLPPNKNSGFTSCAVSS-SGRYIFCGS----------------DDNNVHVWDLLKTTHNGVLSGHE 1952 (2004)
Q Consensus 1890 IrIWDLrtgk~i~t~~~~~~~s~ItsLafSP-dG~~LaSGS----------------sDGsIrIWDL~tge~l~tL~gHs 1952 (2004)
|++||+.+++.......+. .. +.|+| +|+++++++ .++.|++||+.+++.. .+..+.
T Consensus 266 l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~ 339 (396)
T 3c5m_A 266 IYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHS 339 (396)
T ss_dssp EEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECC
T ss_pred EEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCC
Confidence 9999998887544332221 23 88999 999888765 3478999999887754 344444
Q ss_pred C-----------CeEEEEEcCCCCEEEEEEC-CCeEEEE--ECCCCe
Q psy8748 1953 N-----------RVTSISLSPNGMALVTSSW-DQFVKVW--QESNTI 1985 (2004)
Q Consensus 1953 ~-----------~VtsLaFSPDg~~LaSgS~-DGtIrIW--dlstg~ 1985 (2004)
. .+..++|+|||+.|+.++. ++...+| ++.++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 340 TSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred CccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 4 2567899999998887765 4555555 455553
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-14 Score=172.21 Aligned_cols=240 Identities=13% Similarity=0.026 Sum_probs=158.1
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEE--ecCCCEEEEe-----------------
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF--AQSGNFVACG----------------- 1752 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLaf--SPdg~~LaSG----------------- 1752 (2004)
...+.+.+|+|||+.|+.++.++.|++||+.+++.......+...+....| ++++..++..
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhh
Confidence 334445689999999999999999999999999888777777776655544 8899988743
Q ss_pred -----ecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCc-EEEeec------CCeEEEEECCCCceeEEe
Q psy8748 1753 -----GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTT-LLTGSG------DMKIVTWNLETGQRIHEV 1819 (2004)
Q Consensus 1753 -----S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~-LlSgS~------DGtI~IWDl~tg~~i~~i 1819 (2004)
..++.|.+||+.+++ ...+..+...+..+.|++ ++. ++.+.. ...|.++|...+... .+
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~-------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l 231 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGE-------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KV 231 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ES
T ss_pred hhhccCCcceEEEEECCCCc-------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Ee
Confidence 234679999987642 223334556678888988 654 544443 337888888765543 33
Q ss_pred ecccc-CCeEEEEECCCCCEEEEEEC-CC----eEEEEECCCCeEEE--EEecCCC---CeEEEEEeCCCCEEEEE----
Q psy8748 1820 AQAHI-GDVVSISLSPDGQYFVTGSV-DK----SCKLWDFREKKCVQ--TFFGHEA---DVNSVCFHPSGLAFATG---- 1884 (2004)
Q Consensus 1820 l~~h~-~~ItsLafSPdg~~LaSGS~-DG----sIrIWDlrs~k~I~--tl~~h~s---~ItsIafSPdg~~LaSg---- 1884 (2004)
..... ..+...+|+|||+.|+..+. ++ .|++||+.+++... .+.++.. ....+.|+|||+.++..
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 311 (388)
T 3pe7_A 232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD 311 (388)
T ss_dssp CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence 22222 35778899999997765443 22 39999999887432 2222100 01223799999887754
Q ss_pred -----ECCCeEEEEEccCCceeEEEcCCCC--------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC
Q psy8748 1885 -----SEDKTARLFDIRADQQIATYLPPNK--------NSGFTSCAVSSSGRYIFCGSD-DNNVHVWDL 1939 (2004)
Q Consensus 1885 -----S~DGtIrIWDLrtgk~i~t~~~~~~--------~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL 1939 (2004)
..++.|++||+.+++.......... ...+..++|+|||+.|+.++. +|...+|.+
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 312 SGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -----CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 4466899999998765433322110 003677899999998887664 666666543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=8.7e-14 Score=168.77 Aligned_cols=256 Identities=15% Similarity=0.133 Sum_probs=184.1
Q ss_pred EEEEeCCCCEEEEEe----------CCCeEEEEECCCCceEEEeeCC------CCceEEEEEecCCCEEEEeec--CCeE
Q psy8748 1697 SVHYSGDSRHCVSGS----------LDGKLIIWDTWTGNKTQVIPLR------SAWVMSVAFAQSGNFVACGGM--DNMC 1758 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS----------~DGtIrVWDl~Tgk~l~ti~~H------t~~ItsLafSPdg~~LaSGS~--DGtI 1758 (2004)
.++|+|||+++++++ .++.|.+||..+++.+..+... ......++|+|+|++++++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 789999999999886 2678999999999998887643 345678999999999998874 5899
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeC--CCcEEEeecCCeEEEEECCC-CceeEEe-----eccccCCeEEE
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLET-GQRIHEV-----AQAHIGDVVSI 1830 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~t-g~~i~~i-----l~~h~~~ItsL 1830 (2004)
.+||+.++ +....+....+. ..+.+.+ ...+++.+.||.+.+|+... ++..... +.....++ .+
T Consensus 134 ~v~d~~~~------~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~ 205 (361)
T 2oiz_A 134 GIVDVAKG------DYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FI 205 (361)
T ss_dssp EEEETTTT------EEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CS
T ss_pred EEEECCCC------cEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EE
Confidence 99999864 333331112221 1122333 24678889999999999865 4433111 11111221 23
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCe--EEEEEecCC----------CCeEEEEEeCCCCEEEEEEC-----------C
Q psy8748 1831 SLSPDGQYFVTGSVDKSCKLWDFREKK--CVQTFFGHE----------ADVNSVCFHPSGLAFATGSE-----------D 1887 (2004)
Q Consensus 1831 afSPdg~~LaSGS~DGsIrIWDlrs~k--~I~tl~~h~----------s~ItsIafSPdg~~LaSgS~-----------D 1887 (2004)
.+.+++..++..+.+|.|.++|+.... ....+.... .....++|+|+++.++++.. +
T Consensus 206 ~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~ 285 (361)
T 2oiz_A 206 APALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA 285 (361)
T ss_dssp CCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred EecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence 335677777778889999999987543 222221100 11223789999888877653 3
Q ss_pred CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEEccCCCCeEEEEEcCCCC
Q psy8748 1888 KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT--THNGVLSGHENRVTSISLSPNGM 1965 (2004)
Q Consensus 1888 GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg--e~l~tL~gHs~~VtsLaFSPDg~ 1965 (2004)
+.|.+||+.+++.+.++.... ...++|+|+|+++++++. +.|.+||..++ +.+..+..+......++++|+|.
T Consensus 286 ~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 286 AEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ceEEEEECCCCcEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 489999999999988885432 789999999999998887 99999999999 99999877888899999999985
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-14 Score=192.67 Aligned_cols=279 Identities=9% Similarity=0.039 Sum_probs=190.3
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCc-----eEEEEEecCCCEEEEeecC---------CeE
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAW-----VMSVAFAQSGNFVACGGMD---------NMC 1758 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~-----ItsLafSPdg~~LaSGS~D---------GtI 1758 (2004)
....+++|+|||++++++ ||.|++||+.+++....+..|... ...+.|+|||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345689999999999886 899999999999988888777543 2447899999999998876 567
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCe-----------
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDV----------- 1827 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~I----------- 1827 (2004)
.+||+.+++ ...+..+...+....|++++..++...++.|++||..++........++...+
T Consensus 95 ~~~d~~~~~-------~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 95 DIYDLNKRQ-------LITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEETTTTE-------ECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEEECCCCc-------EEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 799998753 22345566778999999877655555789999999998875533223332222
Q ss_pred ------EEEEECCCCCEEEEEECCC------------------------------------eEEEEECCC---Ce--EEE
Q psy8748 1828 ------VSISLSPDGQYFVTGSVDK------------------------------------SCKLWDFRE---KK--CVQ 1860 (2004)
Q Consensus 1828 ------tsLafSPdg~~LaSGS~DG------------------------------------sIrIWDlrs---~k--~I~ 1860 (2004)
..+.|+|||+.|+.++.|. .|++||+.+ ++ ...
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 3589999999999875321 588899988 72 223
Q ss_pred EEe------cCCCCeEEEEEeCCCCEEEEEEC----CCeEEEEEccCCc----ee--EEEcCCCCCCCe-----EEEEEc
Q psy8748 1861 TFF------GHEADVNSVCFHPSGLAFATGSE----DKTARLFDIRADQ----QI--ATYLPPNKNSGF-----TSCAVS 1919 (2004)
Q Consensus 1861 tl~------~h~s~ItsIafSPdg~~LaSgS~----DGtIrIWDLrtgk----~i--~t~~~~~~~s~I-----tsLafS 1919 (2004)
.+. ++...+..++|+|||+.++.... +..|.+||+.+++ +. .......+...+ ...+|+
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence 333 27778999999999997665543 2379999999887 21 111001222222 367899
Q ss_pred CCCCEEE-EEeC-C--CeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q psy8748 1920 SSGRYIF-CGSD-D--NNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWD-----QFVKVWQES 1982 (2004)
Q Consensus 1920 PdG~~La-SGSs-D--GsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D-----GtIrIWdls 1982 (2004)
|||+.++ ..+. + ..|++||+..++.. .+......|..+.. +|++.|+..+.. +...+|.++
T Consensus 328 pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 328 LDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence 9999877 5553 3 36888998766554 34444556666543 346655544432 344555443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-13 Score=159.14 Aligned_cols=241 Identities=11% Similarity=0.165 Sum_probs=181.2
Q ss_pred CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEe------cCccceeeeEEe-CCCcEEEeec--C
Q psy8748 1732 LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELL------GYEGFLSSCRFI-DDTTLLTGSG--D 1802 (2004)
Q Consensus 1732 ~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~------gh~~~Vssvafs-dd~~LlSgS~--D 1802 (2004)
++-..+.+++++++++++++...++.|.+|+.+.. ....+. ++...+..+++. +++.+++++. +
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-------~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~ 99 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT 99 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCc-------EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC
Confidence 34456899999999998888888999999997531 222222 233456788884 5666666653 8
Q ss_pred CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCCCCE
Q psy8748 1803 MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF--GHEADVNSVCFHPSGLA 1880 (2004)
Q Consensus 1803 GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~--~h~s~ItsIafSPdg~~ 1880 (2004)
+.|.+|| .+++....+...+...+.+++++++|+.+++...++.|.+||.. ++.+..+. .+...+.+++++++|++
T Consensus 100 ~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 100 HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI 177 (286)
T ss_dssp CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCE
Confidence 9999999 56666545434445678999999999977777778999999964 55555553 34456899999999987
Q ss_pred EEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeeeEEEccCCC--CeEE
Q psy8748 1881 FATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN-NVHVWDLLKTTHNGVLSGHEN--RVTS 1957 (2004)
Q Consensus 1881 LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDG-sIrIWDL~tge~l~tL~gHs~--~Vts 1957 (2004)
+++...++.|++||.. ++.+..+........+..++++++|+++++...++ .|.+||. +++.+..+..+.. .+.+
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD 255 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCccee
Confidence 7777778999999974 56666664443335688999999999888887776 9999995 5666766655433 4789
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1958 ISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1958 LaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
++++++|+++++ +.|+.|++|+....
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 999999987776 67999999998654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-13 Score=164.06 Aligned_cols=254 Identities=12% Similarity=0.115 Sum_probs=190.4
Q ss_pred ccceeEEEEeCCCCEEEEEeCC------------------------CeEEEEECCCCceEEEee-CCCCceEEEEEecCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLD------------------------GKLIIWDTWTGNKTQVIP-LRSAWVMSVAFAQSG 1746 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~D------------------------GtIrVWDl~Tgk~l~ti~-~Ht~~ItsLafSPdg 1746 (2004)
-+.|.+++++|+|+++++...+ +.|.+||..+++....+. .+-....+++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4689999999999999888777 479999998898877664 344578899999999
Q ss_pred CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCC
Q psy8748 1747 NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD 1826 (2004)
Q Consensus 1747 ~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ 1826 (2004)
+++++...++.|++|+.+... .....+... . .. +. ...+...
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~-----~~~~~~~~~-~-----------------~~----------g~-----~~~~~~~ 144 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKE-----GPLLILGRS-M-----------------QP----------GS-----DQNHFCQ 144 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSS-----CCSEEESBT-T-----------------BC----------CC-----STTCCSS
T ss_pred CEEEEECCCCEEEEEeCCCCe-----EEEEEeccc-C-----------------CC----------CC-----CccccCC
Confidence 988888888999999875321 011111000 0 00 00 0123446
Q ss_pred eEEEEECC-CCCEEEEEE-CCCeEEEEECCCCeEEEEEecCC----------CCeEEEEEeCC-CCEEEEEECCCeEEEE
Q psy8748 1827 VVSISLSP-DGQYFVTGS-VDKSCKLWDFREKKCVQTFFGHE----------ADVNSVCFHPS-GLAFATGSEDKTARLF 1893 (2004)
Q Consensus 1827 ItsLafSP-dg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~h~----------s~ItsIafSPd-g~~LaSgS~DGtIrIW 1893 (2004)
...++++| +++++++.+ .++.|++|| .++..+..+.... ....+++++|+ +.++++...++.|++|
T Consensus 145 P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 145 PTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF 223 (329)
T ss_dssp EEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence 78999999 787777775 689999999 5677666664222 34889999998 7777777788999999
Q ss_pred EccCCceeEEEcCCCCCCCeEEEEEcC------CCCEEEEEeCCCeEEEEECCCCeeeEEEc---cCCCCeEEEEEcCCC
Q psy8748 1894 DIRADQQIATYLPPNKNSGFTSCAVSS------SGRYIFCGSDDNNVHVWDLLKTTHNGVLS---GHENRVTSISLSPNG 1964 (2004)
Q Consensus 1894 DLrtgk~i~t~~~~~~~s~ItsLafSP------dG~~LaSGSsDGsIrIWDL~tge~l~tL~---gHs~~VtsLaFSPDg 1964 (2004)
|..+++.+..+........+..++++| +|+..++...++.|++||..+++.+..+. ++...+.+++++++|
T Consensus 224 ~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG 303 (329)
T 3fvz_A 224 KTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG 303 (329)
T ss_dssp ETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred ECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence 999899888886666667788999999 33322233345589999999999998873 677789999999999
Q ss_pred CEEEEEECCCeEEEEECCCC
Q psy8748 1965 MALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1965 ~~LaSgS~DGtIrIWdlstg 1984 (2004)
.++++...++.|++|+++..
T Consensus 304 ~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 304 TVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEEESSSCCEEEEEEEEC
T ss_pred CEEEEECCCCEEEEEeCCcc
Confidence 88888888999999998753
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-14 Score=180.19 Aligned_cols=290 Identities=12% Similarity=0.020 Sum_probs=202.2
Q ss_pred cccccccccceeEEEEeCCCCEEEEE--eCCCeEEEEECCCCceEEEeeCCCCceE---------EEEEe--cCCCE-EE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSG--SLDGKLIIWDTWTGNKTQVIPLRSAWVM---------SVAFA--QSGNF-VA 1750 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASG--S~DGtIrVWDl~Tgk~l~ti~~Ht~~It---------sLafS--Pdg~~-La 1750 (2004)
...+.+|...|..++|++++-++++. +.++...||....+.....+..+...+. ...|+ |||+. |+
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 34577899999999999887777777 5688999998655556666766766666 66676 99998 76
Q ss_pred Eeec-CCeEEEEEcC--C-CCCCCcceEEEEEec-----CccceeeeEEeCCC-cEEEeecC----------CeEEEEEC
Q psy8748 1751 CGGM-DNMCTVYDLN--N-RDSTGAAKVIRELLG-----YEGFLSSCRFIDDT-TLLTGSGD----------MKIVTWNL 1810 (2004)
Q Consensus 1751 SGS~-DGtIrVWDl~--t-~~~~~~~k~i~sl~g-----h~~~Vssvafsdd~-~LlSgS~D----------GtI~IWDl 1810 (2004)
.++. +..|.+|++. . +. ...+.. +...+..+.|++++ .+++++.+ ..|++||+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~-------~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~ 168 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAV-------PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPL 168 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCC-------CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred EEECCCCeEEEEcCCCCCCCC-------CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEEC
Confidence 6554 4556666654 1 21 122333 45677888998665 46666665 58999999
Q ss_pred CC------CceeEEeeccccCCeEEEEECCCCCEEEEEECC--------CeEEEEECC-CC---eEEEEEecCCCCeEEE
Q psy8748 1811 ET------GQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD--------KSCKLWDFR-EK---KCVQTFFGHEADVNSV 1872 (2004)
Q Consensus 1811 ~t------g~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D--------GsIrIWDlr-s~---k~I~tl~~h~s~ItsI 1872 (2004)
.+ +... .+...+...+..++|+|||++|+.++.+ ..|++||+. ++ +.......+...+..+
T Consensus 169 ~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~ 247 (662)
T 3azo_A 169 DGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA 247 (662)
T ss_dssp TSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred CCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence 88 4432 3321445678889999999999988755 379999998 56 4444444557889999
Q ss_pred EEeCCCCEEEEEECCC--eEEEEEccCCceeEEEcCCCCCC--------CeEEEEEcCCCCEEEEEeCCCeEEEE--ECC
Q psy8748 1873 CFHPSGLAFATGSEDK--TARLFDIRADQQIATYLPPNKNS--------GFTSCAVSSSGRYIFCGSDDNNVHVW--DLL 1940 (2004)
Q Consensus 1873 afSPdg~~LaSgS~DG--tIrIWDLrtgk~i~t~~~~~~~s--------~ItsLafSPdG~~LaSGSsDGsIrIW--DL~ 1940 (2004)
.|+|||++++++..+| .|.+||..+++..... . .+.. .+..++|+++++++++++. |.+++| |+.
T Consensus 248 ~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~-~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~ 324 (662)
T 3azo_A 248 EWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC-R-REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPE 324 (662)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECTTTCCEEESS-C-CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETT
T ss_pred EECCCCeEEEEECCCCCeEEEEEECCCCceeecc-c-ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECC
Confidence 9999999888888888 5666776566543222 1 1111 1467899999999999998 999998 655
Q ss_pred CCeeeEEEccCCCCeEEE-EEcCCCCEEEEEECCC--eEEEEECCCCeE
Q psy8748 1941 KTTHNGVLSGHENRVTSI-SLSPNGMALVTSSWDQ--FVKVWQESNTIV 1986 (2004)
Q Consensus 1941 tge~l~tL~gHs~~VtsL-aFSPDg~~LaSgS~DG--tIrIWdlstg~l 1986 (2004)
.++ ...+..|.+.+..+ +++.+.-++++++.+. .|.+|++.+++.
T Consensus 325 ~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 325 SGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp TTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 555 67777788888877 6654444455556664 455556667753
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-14 Score=168.69 Aligned_cols=237 Identities=9% Similarity=0.017 Sum_probs=155.9
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEE-------------------EEEecCCCEEEEe-----
Q psy8748 1697 SVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMS-------------------VAFAQSGNFVACG----- 1752 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~Its-------------------LafSPdg~~LaSG----- 1752 (2004)
.+.|+|||++|+.++.++.|++||+.+++.......+...... +.|+|+++.++.+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 3689999999999999999999999998877666655543333 3456777766544
Q ss_pred ecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-C-CcEEEeecC------CeEEEEECCCCceeEEeeccc-
Q psy8748 1753 GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-D-TTLLTGSGD------MKIVTWNLETGQRIHEVAQAH- 1823 (2004)
Q Consensus 1753 S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d-~~LlSgS~D------GtI~IWDl~tg~~i~~il~~h- 1823 (2004)
..++.|.+||+.++. ...+..+...+..+.|++ + ..++..+.+ ..|.+||...+... .+....
T Consensus 165 ~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~ 236 (396)
T 3c5m_A 165 NPTCRLIKVDIETGE-------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAE 236 (396)
T ss_dssp CCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCT
T ss_pred CCcceEEEEECCCCc-------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCC
Confidence 356789999987642 112223456677888887 4 445554433 46899998766533 222221
Q ss_pred cCCeEEEEECCCCCEEEEEECC-----CeEEEEECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEEEE------------
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVD-----KSCKLWDFREKKCVQTFFGHEADVNSVCFHP-SGLAFATGS------------ 1885 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~D-----GsIrIWDlrs~k~I~tl~~h~s~ItsIafSP-dg~~LaSgS------------ 1885 (2004)
...+..++|+|+|++|+.++.+ +.|++||+.+++....... .. .. +.|+| +|+++++++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC---------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccc
Confidence 2357889999999987777544 4599999988765433221 22 33 88999 999888765
Q ss_pred ----CCCeEEEEEccCCceeEEEcCCCCC--------CCeEEEEEcCCCCEEEEEeC-CCe--EEEEECCCCee
Q psy8748 1886 ----EDKTARLFDIRADQQIATYLPPNKN--------SGFTSCAVSSSGRYIFCGSD-DNN--VHVWDLLKTTH 1944 (2004)
Q Consensus 1886 ----~DGtIrIWDLrtgk~i~t~~~~~~~--------s~ItsLafSPdG~~LaSGSs-DGs--IrIWDL~tge~ 1944 (2004)
.++.|++||+.+++........... .....++|+|+|+.|+.++. ++. |+.+|+..+..
T Consensus 314 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp -CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred cccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 2478999999877654322111100 02456789999998887765 454 45555555443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-13 Score=177.60 Aligned_cols=278 Identities=13% Similarity=0.078 Sum_probs=173.1
Q ss_pred EEEe--CCCCE-EEEEeC-CCeEEEEECC--CCceEEEeeC-----CCCceEEEEEecCCCEEEEeecC----------C
Q psy8748 1698 VHYS--GDSRH-CVSGSL-DGKLIIWDTW--TGNKTQVIPL-----RSAWVMSVAFAQSGNFVACGGMD----------N 1756 (2004)
Q Consensus 1698 LaFS--PDG~~-LASGS~-DGtIrVWDl~--Tgk~l~ti~~-----Ht~~ItsLafSPdg~~LaSGS~D----------G 1756 (2004)
.+|+ |||++ |+.++. ++.|++|++. .+.....+.. |...+.+++|+|||+.|++++.+ .
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 4454 99998 776654 5677777765 2033444554 66788999999999999998877 5
Q ss_pred eEEEEEcCCCCCCCcceEEEEEe-cCccceeeeEEeCCCc-EEEeecC--------CeEEEEECC-CCc--eeEEeeccc
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELL-GYEGFLSSCRFIDDTT-LLTGSGD--------MKIVTWNLE-TGQ--RIHEVAQAH 1823 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~-gh~~~Vssvafsdd~~-LlSgS~D--------GtI~IWDl~-tg~--~i~~il~~h 1823 (2004)
.|++|++.+........ ...+. .+...+..+.|++++. ++.++.+ ..|++||+. ++. ....+...+
T Consensus 162 ~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp EEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred EEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 89999987610000001 12333 4456777888987664 6556544 489999998 562 333444556
Q ss_pred cCCeEEEEECCCCCEEEEEECCC--eEEEEECCCCeEEEEEecCCCC--------eEEEEEeCCCCEEEEEECCCeEEEE
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVDK--SCKLWDFREKKCVQTFFGHEAD--------VNSVCFHPSGLAFATGSEDKTARLF 1893 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~DG--sIrIWDlrs~k~I~tl~~h~s~--------ItsIafSPdg~~LaSgS~DGtIrIW 1893 (2004)
...+..++|+|||++++++..+| .|++||..+++.......+... +.+++|+|++.++++++. |.+++|
T Consensus 241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 319 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLG 319 (662)
T ss_dssp TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEE
T ss_pred CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEE
Confidence 78899999999999888887888 6777777666654333332222 567899999999999988 999999
Q ss_pred --EccCCceeEEEcCCCCCCCeEEE-EEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEE
Q psy8748 1894 --DIRADQQIATYLPPNKNSGFTSC-AVSSSGRYIFCGSDDN--NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALV 1968 (2004)
Q Consensus 1894 --DLrtgk~i~t~~~~~~~s~ItsL-afSPdG~~LaSGSsDG--sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~La 1968 (2004)
|..+++ ...+. .+...+..+ +++.+.-++++++.+. .|++||+.+++.......|...+....+.+.....+
T Consensus 320 ~~d~~~~~-~~~l~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 396 (662)
T 3azo_A 320 ILDPESGE-LVDAA--GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTF 396 (662)
T ss_dssp EEETTTTE-EEECC--SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEE
T ss_pred EEECCCCc-EEEec--CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEE
Confidence 554444 44442 333456655 4433333334445453 566677777776554445544333333333333333
Q ss_pred EEECCCeEEEEE
Q psy8748 1969 TSSWDQFVKVWQ 1980 (2004)
Q Consensus 1969 SgS~DGtIrIWd 1980 (2004)
.+..+..|..|-
T Consensus 397 ~~~dg~~i~~~~ 408 (662)
T 3azo_A 397 TAPDGREIHAHI 408 (662)
T ss_dssp ECTTSCEEEEEE
T ss_pred EcCCCCEEEEEE
Confidence 333333565554
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-13 Score=166.05 Aligned_cols=273 Identities=12% Similarity=0.099 Sum_probs=192.7
Q ss_pred CCCEEEEEe------CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee----------cCCeEEEEEcCCC
Q psy8748 1703 DSRHCVSGS------LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG----------MDNMCTVYDLNNR 1766 (2004)
Q Consensus 1703 DG~~LASGS------~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS----------~DGtIrVWDl~t~ 1766 (2004)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+|+++++++++ .++.|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455555543 3689999999999999888877665 899999999999886 3678999998754
Q ss_pred CCCCcceEEEEEec------CccceeeeEEeCCC-cEEEeec--CCeEEEEECCCCceeEE-eeccccCCeEEEEECCCC
Q psy8748 1767 DSTGAAKVIRELLG------YEGFLSSCRFIDDT-TLLTGSG--DMKIVTWNLETGQRIHE-VAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~g------h~~~Vssvafsdd~-~LlSgS~--DGtI~IWDl~tg~~i~~-il~~h~~~ItsLafSPdg 1836 (2004)
+ ....+.. +......+.+++++ +++++.. ++.|.+||..+++.+.. +. . .....+.+.|++
T Consensus 92 ~------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~-~~~~~v~~~p~~ 162 (361)
T 2oiz_A 92 T------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--A-AGCWSVIPQPNR 162 (361)
T ss_dssp C------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG--G-TTEEEEEECTTS
T ss_pred c------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec--C-CCcceeEEcCCC
Confidence 2 3333321 22345677888655 5666653 68999999999987655 31 2 223335677765
Q ss_pred -CEEEEEECCCeEEEEECCC-CeEEEEE------ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCcee--EEEcC
Q psy8748 1837 -QYFVTGSVDKSCKLWDFRE-KKCVQTF------FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQI--ATYLP 1906 (2004)
Q Consensus 1837 -~~LaSGS~DGsIrIWDlrs-~k~I~tl------~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i--~t~~~ 1906 (2004)
..+++.+.||.+.+|+... ++..... .....+ ..+.+++++..++..+.+|.|.++|+..+... ..+..
T Consensus 163 ~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~ 241 (361)
T 2oiz_A 163 PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSL 241 (361)
T ss_dssp SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEES
T ss_pred CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccc
Confidence 6788889999999999865 5443221 122222 23345677878888888999999998755422 22111
Q ss_pred CC--------CCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEE
Q psy8748 1907 PN--------KNSGFTSCAVSSSGRYIFCGSD-----------DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMAL 1967 (2004)
Q Consensus 1907 ~~--------~~s~ItsLafSPdG~~LaSGSs-----------DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~L 1967 (2004)
.. .......++++|+++.++++.. .+.|.+||+.+++.+..+..+. +.+++|+|||++|
T Consensus 242 ~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l 319 (361)
T 2oiz_A 242 LNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLM 319 (361)
T ss_dssp CCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEE
T ss_pred cCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEE
Confidence 00 0011123689999988887653 3589999999999999998877 9999999999999
Q ss_pred EEEECCCeEEEEECCCC--eEEEEE
Q psy8748 1968 VTSSWDQFVKVWQESNT--IVWKVL 1990 (2004)
Q Consensus 1968 aSgS~DGtIrIWdlstg--~l~k~I 1990 (2004)
++++. +.|.+||..++ +..+.+
T Consensus 320 ~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 320 LTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EEECS-SCEEEEECSSSSCEEEEEE
T ss_pred EEeCC-CeEEEEECCCCcceeeEEe
Confidence 99887 99999999998 655443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=165.67 Aligned_cols=247 Identities=12% Similarity=0.112 Sum_probs=169.0
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECC-CCceEEEeeC-CCCceEEEEEecCCCE--EEEee-------------cC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTW-TGNKTQVIPL-RSAWVMSVAFAQSGNF--VACGG-------------MD 1755 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~-Tgk~l~ti~~-Ht~~ItsLafSPdg~~--LaSGS-------------~D 1755 (2004)
..+..++|+|||++|++++.+ .|.+|++. +|+....... ..+.+.+++|+|+|++ ++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 467899999999999999887 99999987 7766543321 1123566899999994 45553 68
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEe-cCccceeeeEEeCCCc-EEEee-cCCeEEEEECC-CCceeEE-eec--cccCCeE
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELL-GYEGFLSSCRFIDDTT-LLTGS-GDMKIVTWNLE-TGQRIHE-VAQ--AHIGDVV 1828 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~-gh~~~Vssvafsdd~~-LlSgS-~DGtI~IWDl~-tg~~i~~-il~--~h~~~It 1828 (2004)
|.+.+|+++.... ......... .+...+.++.|++++. ++++. .++.|++||+. +++.... ... .+...+.
T Consensus 119 g~v~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 119 GYGNVFSVSETGK--LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp CEEEEEEECTTCC--EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred ceEEEEccCCCCc--CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 9999999974211 111111111 2456788899997764 55554 46899999998 6764321 111 2356689
Q ss_pred EEEECCCCCEEEEEEC-CCeEEEEECC--CCeEE---EEEec-------CCC------CeEEEE-EeCCCCEEEEEECCC
Q psy8748 1829 SISLSPDGQYFVTGSV-DKSCKLWDFR--EKKCV---QTFFG-------HEA------DVNSVC-FHPSGLAFATGSEDK 1888 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS~-DGsIrIWDlr--s~k~I---~tl~~-------h~s------~ItsIa-fSPdg~~LaSgS~DG 1888 (2004)
.++|+|+|+++++++. ++.|.+|+++ +++.. ..+.. +.. .+..++ |+|||+++++++.++
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999988875 6899999865 45432 12221 121 488999 999999988776433
Q ss_pred ------eEEEEEcc-CCceeEEEc-CCCCCCCeEEEEEcC---CCCEEEEEeCC-CeEEEEECCCC
Q psy8748 1889 ------TARLFDIR-ADQQIATYL-PPNKNSGFTSCAVSS---SGRYIFCGSDD-NNVHVWDLLKT 1942 (2004)
Q Consensus 1889 ------tIrIWDLr-tgk~i~t~~-~~~~~s~ItsLafSP---dG~~LaSGSsD-GsIrIWDL~tg 1942 (2004)
.|.+|++. +++...... ..........++|+| +|++|++++.+ +.|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 555432110 111223355788999 89999998864 89999998665
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-12 Score=163.44 Aligned_cols=290 Identities=15% Similarity=0.139 Sum_probs=205.0
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECC--CCceEEEeeCCCCceEEEEEe----cCCCEEEEeec-CCeEEEEEcCCC
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTW--TGNKTQVIPLRSAWVMSVAFA----QSGNFVACGGM-DNMCTVYDLNNR 1766 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~--Tgk~l~ti~~Ht~~ItsLafS----Pdg~~LaSGS~-DGtIrVWDl~t~ 1766 (2004)
.+..++|+|||+++++++.|+.|.+||+. +++.+..+.... ....++|+ |+|+++++++. ++.|.++|..+.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 34589999999999999999999999996 888888887644 46799999 69998877765 489999998664
Q ss_pred CCCCcceEEEEEec----------C-ccceeeeEEeCC-C-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEEC
Q psy8748 1767 DSTGAAKVIRELLG----------Y-EGFLSSCRFIDD-T-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLS 1833 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~g----------h-~~~Vssvafsdd-~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafS 1833 (2004)
+ .+..+.- | ...+..+..+.+ . .++....+|.|.++|...................++.|+
T Consensus 277 ~------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~ 350 (567)
T 1qks_A 277 E------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 350 (567)
T ss_dssp C------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred c------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceEC
Confidence 3 2222221 1 114455555543 2 345556679999999987654322222334557789999
Q ss_pred CCCCEEEEEE-CCCeEEEEECCCCeEEEEEec-CCCC--eEEEE-EeCCCCEEE-EEE-CCCeEEEEEccC-------Cc
Q psy8748 1834 PDGQYFVTGS-VDKSCKLWDFREKKCVQTFFG-HEAD--VNSVC-FHPSGLAFA-TGS-EDKTARLFDIRA-------DQ 1899 (2004)
Q Consensus 1834 Pdg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~-h~s~--ItsIa-fSPdg~~La-SgS-~DGtIrIWDLrt-------gk 1899 (2004)
|+|++++++. .++.|.++|..+++.+..+.. ...+ -.... ++|++..++ ++. .++.|.++|..+ .+
T Consensus 351 pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~k 430 (567)
T 1qks_A 351 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWK 430 (567)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred CCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCE
Confidence 9999988776 578999999999988776654 1111 12222 578755554 443 468999999987 56
Q ss_pred eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-------CCeEEEEECCCC-----ee-eEEEc--------cCCCCeEEE
Q psy8748 1900 QIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-------DNNVHVWDLLKT-----TH-NGVLS--------GHENRVTSI 1958 (2004)
Q Consensus 1900 ~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-------DGsIrIWDL~tg-----e~-l~tL~--------gHs~~VtsL 1958 (2004)
.+.++...+ ..-..+..+|+++++.+... .++|.++|+.+. .. ...+. .-...+..+
T Consensus 431 vv~~i~~~g--~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (567)
T 1qks_A 431 ILDSFPALG--GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQG 508 (567)
T ss_dssp EEEEEECSC--SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEE
T ss_pred EEEEEecCC--CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEee
Confidence 667665432 23345778999999998763 358999999876 21 13332 124579999
Q ss_pred EEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEEe
Q psy8748 1959 SLSPNGMALVTSSW-----DQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1959 aFSPDg~~LaSgS~-----DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
.|+++|+.+..+.+ ++.|.|+|..+++..+.++.
T Consensus 509 ~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 509 EFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred eECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 99999998877643 79999999999987776663
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-11 Score=142.17 Aligned_cols=283 Identities=8% Similarity=-0.032 Sum_probs=200.7
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe-eCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCC
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI-PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti-~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
+..+...+.+++++++|+.+++...++.|.+||.. ++..... ..+...+.+++++++|..+++...++.|..|+.+.
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g- 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG- 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-
Confidence 34456789999999999977777668899999987 5543322 33456799999999999888877788899998752
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEe-ecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTG-SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSg-S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
.... .........+..+.+.+++.++++ ..++.|..||. +++............+.+++++++|+..++...+
T Consensus 88 ----~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 161 (299)
T 2z2n_A 88 ----IIKE-YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQN 161 (299)
T ss_dssp ----CEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred ----cEEE-EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCC
Confidence 1111 112223456777888766666555 45789999998 5554432223345678999999999877766667
Q ss_pred CeEEEEECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1846 KSCKLWDFREKKCVQT-FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1846 GsIrIWDlrs~k~I~t-l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
+.|..||. +++.... .......+.+++++++|+.+++...++.|.+||. +++.. .+........+..++++++|++
T Consensus 162 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 162 NAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAGIDL 238 (299)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCE
T ss_pred CEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECCCCCE
Confidence 89999998 6654432 2334456889999999987776666889999998 66543 3333334467889999999997
Q ss_pred EEEEeCCCeEEEEECCCCeeeEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGV-LSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~t-L~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
+++...++.|..||. +++.... +..+...+.++++ ++|.+.++.+ .+.|..++..++
T Consensus 239 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 239 WFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 666657889999998 4543322 3345678999999 8888766655 567777877664
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-12 Score=149.44 Aligned_cols=243 Identities=12% Similarity=0.227 Sum_probs=177.2
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC------CCCceEEEEEe-cCCCEEEEeec-CCeEEE
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL------RSAWVMSVAFA-QSGNFVACGGM-DNMCTV 1760 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~------Ht~~ItsLafS-Pdg~~LaSGS~-DGtIrV 1760 (2004)
.+|-..+.+++++++++++++...++.|.+||.. ++....+.. +...+.+++++ ++++.+++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4567789999999999988888889999999976 666666642 33568999995 67776666643 789999
Q ss_pred EEcCCCCCCCcceEEEEEe-cCccceeeeEEeCCCcEEEe-ecCCeEEEEECCCCceeEEeec-cccCCeEEEEECCCCC
Q psy8748 1761 YDLNNRDSTGAAKVIRELL-GYEGFLSSCRFIDDTTLLTG-SGDMKIVTWNLETGQRIHEVAQ-AHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~-gh~~~Vssvafsdd~~LlSg-S~DGtI~IWDl~tg~~i~~il~-~h~~~ItsLafSPdg~ 1837 (2004)
|+.+ + .....+. .+...+..+++.+++.++++ ..++.|.+||.. ++....+.. .+...+.+++++++|+
T Consensus 105 ~d~~-g------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 105 YNQY-G------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE 176 (286)
T ss_dssp ECTT-S------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred ECCC-C------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC
Confidence 9943 2 2223332 23346778888766555554 567899999965 444433321 3445689999999998
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEecC--CCCeEEEEEeCCCCEEEEEECCC-eEEEEEccCCceeEEEcCCCCCCCeE
Q psy8748 1838 YFVTGSVDKSCKLWDFREKKCVQTFFGH--EADVNSVCFHPSGLAFATGSEDK-TARLFDIRADQQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1838 ~LaSGS~DGsIrIWDlrs~k~I~tl~~h--~s~ItsIafSPdg~~LaSgS~DG-tIrIWDLrtgk~i~t~~~~~~~s~It 1914 (2004)
++++...++.|++||. +++.+..+..+ ...+.+++++++|+++++...++ .|.+||. +++.+..+........+.
T Consensus 177 l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 177 IFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp EEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred EEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 7777777899999997 45556666443 35789999999998888887775 9999995 466666664433334578
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q psy8748 1915 SCAVSSSGRYIFCGSDDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1915 sLafSPdG~~LaSGSsDGsIrIWDL~tge 1943 (2004)
.++++|+|+++++ +.+++|++|+.....
T Consensus 255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 255 DVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred eEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 9999999987666 679999999986543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.6e-13 Score=156.39 Aligned_cols=270 Identities=12% Similarity=0.113 Sum_probs=192.7
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
..|.+++|++++..++..+.++.++.| .++....+..+...+.+++|+++|+.++++..++.|.+|+.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~----- 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE----- 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-----
Confidence 457788899988877777788899999 456666777777788999999999988888889999999987542
Q ss_pred eEEEEEecCccceeeeEEeCCCcEEEeec-C----CeEEEEECCCCceeEEee-ccccCCeEEEEECCCCCEEEEEEC--
Q psy8748 1773 KVIRELLGYEGFLSSCRFIDDTTLLTGSG-D----MKIVTWNLETGQRIHEVA-QAHIGDVVSISLSPDGQYFVTGSV-- 1844 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafsdd~~LlSgS~-D----GtI~IWDl~tg~~i~~il-~~h~~~ItsLafSPdg~~LaSGS~-- 1844 (2004)
.......+...+.++++.+++.+++++. + +.|.+||..++....... ......+.+++++|+|+++++...
T Consensus 78 -~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 78 -IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp -EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred -EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence 1122224556788899987766666554 4 589999998876542221 123456899999999987766543
Q ss_pred ----CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEEccC-CceeEEE------cCCCCCCC
Q psy8748 1845 ----DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATG-SEDKTARLFDIRA-DQQIATY------LPPNKNSG 1912 (2004)
Q Consensus 1845 ----DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSg-S~DGtIrIWDLrt-gk~i~t~------~~~~~~s~ 1912 (2004)
.+.|..||...++... +......+.+++|+|+++.++++ +.++.|.+||..+ +.....+ ....+ ..
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~ 234 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EG 234 (333)
T ss_dssp TTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SE
T ss_pred ccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CC
Confidence 3567777766554332 32333457899999999866554 4578999999964 3322211 11111 35
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCC------CeEEEEEcCCCCEEEEEECCC
Q psy8748 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHEN------RVTSISLSPNGMALVTSSWDQ 1974 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~------~VtsLaFSPDg~~LaSgS~DG 1974 (2004)
+..++++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|++|+..|+.++.+|
T Consensus 235 ~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 235 PDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 778999999998888878899999998 5666666654433 689999999987777666553
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-12 Score=149.97 Aligned_cols=257 Identities=11% Similarity=0.121 Sum_probs=176.7
Q ss_pred cceeEEEEeCCCCEEEEEe---------CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC---C--eE
Q psy8748 1693 NKVNSVHYSGDSRHCVSGS---------LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD---N--MC 1758 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS---------~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D---G--tI 1758 (2004)
..+...++ ||++++... .++.|++||+.+++... + ..+..+.|+|||+.|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45677788 898887542 25789999998887543 3 568899999999999887754 3 36
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeec---------------------------CCeEEEEEC
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSG---------------------------DMKIVTWNL 1810 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~---------------------------DGtI~IWDl 1810 (2004)
.+|++.++ .... +..... +..+.|++++ .++.++. ...|++||+
T Consensus 88 ~~~~~~~g------~~~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 88 WVADLETL------SSKK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp EEEETTTT------EEEE-EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred EEEECCCC------ceEE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 67777543 2222 222233 8888998655 4665543 257999999
Q ss_pred CCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC---------eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEE
Q psy8748 1811 ETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK---------SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAF 1881 (2004)
Q Consensus 1811 ~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG---------sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~L 1881 (2004)
.+++....+.. . .+..++|+|+| +++++..++ .|.++| +++. ..+..+ ..+..+ +|+|+++
T Consensus 160 ~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--spdg~~l 229 (347)
T 2gop_A 160 ESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--DSDGERI 229 (347)
T ss_dssp TTTEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--EECSSCE
T ss_pred CCCeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-EEeccC-cceeeE--CCCCCEE
Confidence 98876334332 3 78899999999 777776542 355555 5543 344344 445444 9999998
Q ss_pred EEEECC--------CeEEEEEccCCceeEEEcCCCCCCCeEE-EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCC
Q psy8748 1882 ATGSED--------KTARLFDIRADQQIATYLPPNKNSGFTS-CAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHE 1952 (2004)
Q Consensus 1882 aSgS~D--------GtIrIWDLrtgk~i~t~~~~~~~s~Its-LafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs 1952 (2004)
+.++.+ +.|.+|| +++.. .+ ...+...+.. +.|+ +| ++++++.+|.+++| +.+++.. .+..+.
T Consensus 230 ~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l-~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~ 301 (347)
T 2gop_A 230 LLYGKPEKKYMSEHNKLYIYD--GKEVM-GI-LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGR 301 (347)
T ss_dssp EEEECCSSSCCCSSCEEEEEC--SSCEE-ES-STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSS
T ss_pred EEEEccccCCccccceEEEEC--CCceE-ec-cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCC
Confidence 887754 3688888 44432 22 2344456775 8999 88 88999999999999 8766554 344457
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeE-EEEECCCCe
Q psy8748 1953 NRVTSISLSPNGMALVTSSWDQFV-KVWQESNTI 1985 (2004)
Q Consensus 1953 ~~VtsLaFSPDg~~LaSgS~DGtI-rIWdlstg~ 1985 (2004)
+.|.+++|++ .++++++.++.. .+|.++ ++
T Consensus 302 ~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 302 HWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp SEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred CeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 8899999999 677777777765 788877 54
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.2e-12 Score=149.57 Aligned_cols=236 Identities=12% Similarity=0.090 Sum_probs=166.5
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC----CeEEEEEcC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD----NMCTVYDLN 1764 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D----GtIrVWDl~ 1764 (2004)
.++...+.+++|+++|++++++..++.|.+||..+++.......+...+.+++|+++|++++++..+ +.|.+|+.+
T Consensus 41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC
Confidence 3455567899999999988888889999999998887766554566789999999999988877666 689999987
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec-------CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCC
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-------DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~-------DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~ 1837 (2004)
++.. ............+..+.+.+++.+++++. .+.|..||..+++.. .+ ......+..++|+|+++
T Consensus 121 ~~~~----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 121 GDNL----QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PI-IQNISVANGIALSTDEK 194 (333)
T ss_dssp SCSC----EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EE-EEEESSEEEEEECTTSS
T ss_pred CCEE----EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-Ee-ecCCCcccceEECCCCC
Confidence 5431 11111112345677888887777766655 366777777655443 22 12334578999999998
Q ss_pred EEEEE-ECCCeEEEEECCC-CeEEEE--------EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC
Q psy8748 1838 YFVTG-SVDKSCKLWDFRE-KKCVQT--------FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP 1907 (2004)
Q Consensus 1838 ~LaSG-S~DGsIrIWDlrs-~k~I~t--------l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~ 1907 (2004)
.++++ +.++.|.+||... +..... +.++ ..+.+++++++|+++++...++.|.+||. +++....+..+
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~ 272 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 272 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence 66655 4578999999863 332211 1111 46788999999998888777899999998 46666666433
Q ss_pred CC----CCCeEEEEEcCCCCEEEEEeCCC
Q psy8748 1908 NK----NSGFTSCAVSSSGRYIFCGSDDN 1932 (2004)
Q Consensus 1908 ~~----~s~ItsLafSPdG~~LaSGSsDG 1932 (2004)
.. ...+.+++|+++++.|++++.+|
T Consensus 273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCccccccCcceEEECCCCCEEEEEeCcc
Confidence 21 11578899999988887766653
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-11 Score=146.43 Aligned_cols=231 Identities=12% Similarity=0.158 Sum_probs=157.3
Q ss_pred ceeEEEEeCCCCEEEEEeCC---C--eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC-------------
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLD---G--KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD------------- 1755 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~D---G--tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D------------- 1755 (2004)
.+.+++|||||++|+.++.+ + .|++||+.+++.......+ . +.++.|+|+|+.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 56789999999999887654 3 4888898888766555443 3 9999999999988887642
Q ss_pred --------------CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC---------CeEEEEECCC
Q psy8748 1756 --------------NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD---------MKIVTWNLET 1812 (2004)
Q Consensus 1756 --------------GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D---------GtI~IWDl~t 1812 (2004)
..|.+|++.+++ ....+.. . .+..+.|++++.++++..+ ..|+++| +
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~------~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~ 207 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEE------VIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--D 207 (347)
T ss_dssp CCC---------CEEEEEEEETTTTE------EEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--T
T ss_pred ceeecCcccccCccceEEEEECCCCe------EEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--C
Confidence 578889987542 2122222 2 6778888877744445433 2455556 4
Q ss_pred CceeEEeeccccCCeEEEEECCCCCEEEEEECC--------CeEEEEECCCCeEEEEEecCCCCeEE-EEEeCCCCEEEE
Q psy8748 1813 GQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD--------KSCKLWDFREKKCVQTFFGHEADVNS-VCFHPSGLAFAT 1883 (2004)
Q Consensus 1813 g~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D--------GsIrIWDlrs~k~I~tl~~h~s~Its-IafSPdg~~LaS 1883 (2004)
++. ..+. .+ ..+..+ +|+|++++.++.+ +.|.+|| +++.......+...+.. +.|+ ++ ++++
T Consensus 208 ~~~-~~l~-~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~ 278 (347)
T 2gop_A 208 GKE-EKMF-EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFT 278 (347)
T ss_dssp TEE-EEEE-EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEE
T ss_pred Cce-EEec-cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEE
Confidence 443 2332 23 445544 8999988887754 3688888 55544444455677886 8999 88 8889
Q ss_pred EECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeE-EEEECCCCeeeEEEccCCC
Q psy8748 1884 GSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNV-HVWDLLKTTHNGVLSGHEN 1953 (2004)
Q Consensus 1884 gS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsI-rIWDL~tge~l~tL~gHs~ 1953 (2004)
++.+|.+++| +.+++..... .....+.+++|++ .++++++.++.. .+|.+. ++ ...+..|..
T Consensus 279 ~~~~~~~~l~-~~~g~~~~~~---~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 279 LFEEGSVNLY-IWDGEIKPIA---KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EEETTEEEEE-EESSSEEEEE---CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred EecCCcEEEE-EcCCceEEEe---cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 9999999999 8866553333 2246788999999 677777777654 777765 44 444555544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=147.99 Aligned_cols=266 Identities=11% Similarity=0.045 Sum_probs=190.4
Q ss_pred CCCeEEEEECCCCceEEEee------CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccce
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIP------LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL 1785 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~------~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~V 1785 (2004)
.++.|.+||..+++....+. .......++++. +++.+++...++.|.+||..+++ ....+. .....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~------~~~~i~-~~~~p 86 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK------EVGRIT-GFTSP 86 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC------EEEEEE-CCSSE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccE------EEEEcC-CCCCC
Confidence 37899999999998765441 122346778774 45566666678999999998653 333333 23556
Q ss_pred eeeEEeCCCcEEEee-cCCeEEEEECCCCceeEEeecccc----CCeEEEEECCCCCEEEEEE--CCCeEEEEECCCCeE
Q psy8748 1786 SSCRFIDDTTLLTGS-GDMKIVTWNLETGQRIHEVAQAHI----GDVVSISLSPDGQYFVTGS--VDKSCKLWDFREKKC 1858 (2004)
Q Consensus 1786 ssvafsdd~~LlSgS-~DGtI~IWDl~tg~~i~~il~~h~----~~ItsLafSPdg~~LaSGS--~DGsIrIWDlrs~k~ 1858 (2004)
..+++.+++.++++. .++.|.+||..+++....+..+.. .....+++ +++.++++. .++.|.+||..+++.
T Consensus 87 ~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~ 164 (328)
T 3dsm_A 87 RYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV 164 (328)
T ss_dssp EEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE
T ss_pred cEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE
Confidence 778886555777766 789999999999887655533221 14556777 455666665 488999999999988
Q ss_pred EEEEecCCCCeEEEEEeCCCCEEEEEECC----------CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEE
Q psy8748 1859 VQTFFGHEADVNSVCFHPSGLAFATGSED----------KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCG 1928 (2004)
Q Consensus 1859 I~tl~~h~s~ItsIafSPdg~~LaSgS~D----------GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSG 1928 (2004)
+..+.. ......++++|+|++++++..+ +.|.+||..+++....+..+. ......++++|++++++++
T Consensus 165 ~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 165 VDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp EEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEE
T ss_pred EEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEE
Confidence 877754 3446789999999877666554 789999999888776664332 2357899999999999887
Q ss_pred eCCCeEEEEECCCCeeeEE--EccCCCCeEEEEEcC-CCCEEEEE----ECCCeEEEEECCCCeEEEEEEe
Q psy8748 1929 SDDNNVHVWDLLKTTHNGV--LSGHENRVTSISLSP-NGMALVTS----SWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1929 SsDGsIrIWDL~tge~l~t--L~gHs~~VtsLaFSP-Dg~~LaSg----S~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
.. .|.+||..+++.... +..+.....+++++| ++.+.++. ..++.|.+|+.+ ++....+..
T Consensus 243 ~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 243 NN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp SS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred cc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 65 899999988775421 122246789999999 56655665 568999999998 665555543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-10 Score=132.14 Aligned_cols=279 Identities=11% Similarity=-0.017 Sum_probs=194.4
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-EeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCC
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQ-VIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS 1768 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~-ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~ 1768 (2004)
.....+.+++++++|+..++...++.|.+||.. ++... .+..+...+.+++++++++.+++...++.|..|+.. +.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~- 93 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG- 93 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC-
Confidence 345688999999999988877778999999987 55443 223334678999999999988887778889999876 32
Q ss_pred CCcceEEEEEecCccceeeeEEeCCCcEEEeec-CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCe
Q psy8748 1769 TGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~-DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGs 1847 (2004)
.. ..........+..+.+.+++.+++++. ++.|..||.. ++............+.+++++++|+..++...++.
T Consensus 94 ---~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 168 (300)
T 2qc5_A 94 ---FT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS 168 (300)
T ss_dssp ---EE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred ---eE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence 11 112222335677777776666555554 7899999987 55542222334567899999999996665555788
Q ss_pred EEEEECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEE
Q psy8748 1848 CKLWDFREKKCVQT-FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIF 1926 (2004)
Q Consensus 1848 IrIWDlrs~k~I~t-l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~La 1926 (2004)
|..||. +++.... ...+...+.++++.++|+.+++...++.|.+||. +++..... .......+.+++++++|++.+
T Consensus 169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v 245 (300)
T 2qc5_A 169 IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-IPTPNARPHAITAGKNSEIWF 245 (300)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTTCEEE
T ss_pred EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-CCCCCCCceEEEECCCCCEEE
Confidence 999998 5554332 2233456889999999987776666778999998 45443332 233345688999999999776
Q ss_pred EEeCCCeEEEEECCCCeeeE-EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1927 CGSDDNNVHVWDLLKTTHNG-VLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1927 SGSsDGsIrIWDL~tge~l~-tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
+...++.|..||. +++... .+......+.+++++++|.+.++.. . .|..++.+
T Consensus 246 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 246 TEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred eccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 6666789999998 444332 2333456789999999998666554 4 67666653
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-11 Score=141.14 Aligned_cols=245 Identities=11% Similarity=0.112 Sum_probs=175.5
Q ss_pred cccccccccceeEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
...+..+.....+++|+|+|+ +++++..++.|..||..++ ...+..+...+.+++++++|+++++...++.|.+|+.
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 345556677889999999998 7788888999999998877 6667777788999999999998888777789999998
Q ss_pred CCCCCCCcceEEEE-Eec-CccceeeeEEeCCCcEEE-----ee-------------cCCeEEEEECCCCceeEEeeccc
Q psy8748 1764 NNRDSTGAAKVIRE-LLG-YEGFLSSCRFIDDTTLLT-----GS-------------GDMKIVTWNLETGQRIHEVAQAH 1823 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~s-l~g-h~~~Vssvafsdd~~LlS-----gS-------------~DGtI~IWDl~tg~~i~~il~~h 1823 (2004)
.++. ...... ..+ ....+..+++.+++.+++ |+ ..+.|..++.. ++.. . ...+
T Consensus 98 ~~g~----~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~-~~~~ 170 (296)
T 3e5z_A 98 PGGE----WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-A-PIRD 170 (296)
T ss_dssp TTCC----EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-E-EECC
T ss_pred CCCc----EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-E-eecC
Confidence 6543 111111 111 122455677877766666 33 13567777765 4432 2 2345
Q ss_pred cCCeEEEEECCCCCEEEEEECCCeEEEEECC-CCeE---EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVDKSCKLWDFR-EKKC---VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ 1899 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~DGsIrIWDlr-s~k~---I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk 1899 (2004)
......++|+|+++.+++.+.++.|++||+. ++.. ...+..+...+.+++++++|+++++. ++.|.+||.. ++
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 5667899999999988777778999999987 4443 23333345567889999999866555 8899999986 77
Q ss_pred eeEEEcCCCCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1900 QIATYLPPNKNSGFTSCAV-SSSGRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1900 ~i~t~~~~~~~s~ItsLaf-SPdG~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
....+..+. . +.+++| +++++.|++++.+ .+.-++..+.+..
T Consensus 248 ~~~~~~~~~--~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 248 ELGRVLTPQ--T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEEEEECSS--C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EEEEEECCC--C-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 766664333 3 788899 5899999998876 4666676665543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-11 Score=140.32 Aligned_cols=245 Identities=11% Similarity=0.131 Sum_probs=177.2
Q ss_pred CceEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec-
Q psy8748 1724 GNKTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG- 1801 (2004)
Q Consensus 1724 gk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~- 1801 (2004)
+..+..+..+.....+++|+|+++ .++++..++.|..|+..++ ...+..+...+.++++.+++.++++..
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~l~~~~dg~l~v~~~~ 88 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--------LSPEMHPSHHQNGHCLNKQGHLIACSHG 88 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--------EEEEESSCSSEEEEEECTTCCEEEEETT
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--------eEEEECCCCCcceeeECCCCcEEEEecC
Confidence 344455556667788999999998 7888888999999998642 334445667788899987776666654
Q ss_pred CCeEEEEECCCCceeEEee--c-cccCCeEEEEECCCCCEEEE----EE-------------CCCeEEEEECCCCeEEEE
Q psy8748 1802 DMKIVTWNLETGQRIHEVA--Q-AHIGDVVSISLSPDGQYFVT----GS-------------VDKSCKLWDFREKKCVQT 1861 (2004)
Q Consensus 1802 DGtI~IWDl~tg~~i~~il--~-~h~~~ItsLafSPdg~~LaS----GS-------------~DGsIrIWDlrs~k~I~t 1861 (2004)
++.|.+||..+++...... . .....+..++++|+|+++++ |+ ..+.|..++.. ++ ...
T Consensus 89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~ 166 (296)
T 3e5z_A 89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSA 166 (296)
T ss_dssp TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEE
T ss_pred CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEE
Confidence 5899999998887542221 1 11234678999999998776 32 13466667665 44 344
Q ss_pred EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEcc-CCce---eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy8748 1862 FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR-ADQQ---IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVW 1937 (2004)
Q Consensus 1862 l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLr-tgk~---i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIW 1937 (2004)
+..+......++|+|+++.+++.+.++.|.+||+. ++.. ...+ ......+..++++++|+++++. ++.|.+|
T Consensus 167 ~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 167 PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 45666778999999999988777778999999997 4544 2333 2234456789999999976665 8899999
Q ss_pred ECCCCeeeEEEccCCCCeEEEEE-cCCCCEEEEEECCCeEEEEECCCCe
Q psy8748 1938 DLLKTTHNGVLSGHENRVTSISL-SPNGMALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1938 DL~tge~l~tL~gHs~~VtsLaF-SPDg~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
|.. ++.+..+..+.. +++++| .++++.|++++.+| +.-++..+..
T Consensus 243 ~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp CTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred CCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 985 778888877777 999999 58999999988764 5555666643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-11 Score=159.59 Aligned_cols=276 Identities=12% Similarity=0.096 Sum_probs=189.0
Q ss_pred CCCCEEEEEeCC-----CeEEEEECCCCceEEEee------CCCCceEEEEEecCCCEEEEeecCC-----eEEEEEcCC
Q psy8748 1702 GDSRHCVSGSLD-----GKLIIWDTWTGNKTQVIP------LRSAWVMSVAFAQSGNFVACGGMDN-----MCTVYDLNN 1765 (2004)
Q Consensus 1702 PDG~~LASGS~D-----GtIrVWDl~Tgk~l~ti~------~Ht~~ItsLafSPdg~~LaSGS~DG-----tIrVWDl~t 1765 (2004)
|+|++++....+ +.+++.+...++....+. +|...+.+++|+|||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 778876654332 234555544454332221 2444688999999999998776543 899999987
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCe----------------EEEEECCCCceeE-Eeec--cccC
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMK----------------IVTWNLETGQRIH-EVAQ--AHIG 1825 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGt----------------I~IWDl~tg~~i~-~il~--~h~~ 1825 (2004)
++ ....... ...+..+.|+++ ..|+.++.++. |++|++.+++... .+.. .+..
T Consensus 161 g~------~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~ 233 (710)
T 2xdw_A 161 AK------ELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK 233 (710)
T ss_dssp TE------EEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred CC------CCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCe
Confidence 53 1111111 122567889855 45777776655 9999998876321 1222 2445
Q ss_pred CeEEEEECCCCCEEEEEEC-----CCeEEEEECCC------Ce-EEEEEecCCCCeEEEEEeCCCCEEEEEECC----Ce
Q psy8748 1826 DVVSISLSPDGQYFVTGSV-----DKSCKLWDFRE------KK-CVQTFFGHEADVNSVCFHPSGLAFATGSED----KT 1889 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSGS~-----DGsIrIWDlrs------~k-~I~tl~~h~s~ItsIafSPdg~~LaSgS~D----Gt 1889 (2004)
.+..+.|+|||++|+.++. +..|++||+.+ +. ....+..+...+.. .|+++|+.|+..+.+ +.
T Consensus 234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~ 312 (710)
T 2xdw_A 234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR 312 (710)
T ss_dssp CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE
T ss_pred EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE
Confidence 5789999999999988775 56899999976 42 34556666666655 488899887776653 36
Q ss_pred EEEEEccCCce--eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCe--EEEEECCCCeeeEEEccCCCCeEEEEEcCCCC
Q psy8748 1890 ARLFDIRADQQ--IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNN--VHVWDLLKTTHNGVLSGHENRVTSISLSPNGM 1965 (2004)
Q Consensus 1890 IrIWDLrtgk~--i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGs--IrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~ 1965 (2004)
|.+||+.++.. ...+..+.....+..++|++++.+++++..+|. |++||+.+++....+..+.+.|..++++|++.
T Consensus 313 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~ 392 (710)
T 2xdw_A 313 LINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT 392 (710)
T ss_dssp EEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred EEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCC
Confidence 99999987642 233333322235778899888888888888884 66778778887788888888899999999987
Q ss_pred EEEEE-E---CCCeEEEEECCCCe
Q psy8748 1966 ALVTS-S---WDQFVKVWQESNTI 1985 (2004)
Q Consensus 1966 ~LaSg-S---~DGtIrIWdlstg~ 1985 (2004)
.++.. + ..+.|+.||+.+++
T Consensus 393 ~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 393 EIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEeCCCCCCEEEEEECCCCc
Confidence 66543 2 34789999998876
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-11 Score=142.65 Aligned_cols=200 Identities=12% Similarity=0.148 Sum_probs=147.7
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc-eEEEe---------eCCCCceEEEEEec-CCCEEEEee-cCCe
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN-KTQVI---------PLRSAWVMSVAFAQ-SGNFVACGG-MDNM 1757 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk-~l~ti---------~~Ht~~ItsLafSP-dg~~LaSGS-~DGt 1757 (2004)
++......++++++|+++++...++.|++||..... .+..+ ..+-....+++++| +++.+++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 344578899999999988888889999999975442 45555 23445689999999 788888886 6899
Q ss_pred EEEEEcCCCCCCCcceEEEEEec----------CccceeeeEEeCC-Cc-EEEeecCCeEEEEECCCCceeEEee-cccc
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLG----------YEGFLSSCRFIDD-TT-LLTGSGDMKIVTWNLETGQRIHEVA-QAHI 1824 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~g----------h~~~Vssvafsdd-~~-LlSgS~DGtI~IWDl~tg~~i~~il-~~h~ 1824 (2004)
|++|+.+. .....+.. +-.....+++.++ +. +++...++.|++||..+++.+..+. ..+.
T Consensus 168 I~~~~~~g-------~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~ 240 (329)
T 3fvz_A 168 IVQFSPSG-------KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG 240 (329)
T ss_dssp EEEECTTS-------CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT
T ss_pred EEEEcCCC-------CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC
Confidence 99999532 22222211 1233678888765 55 5555678899999999888775553 3455
Q ss_pred CCeEEEEECCCCCEEEEE-------ECCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q psy8748 1825 GDVVSISLSPDGQYFVTG-------SVDKSCKLWDFREKKCVQTFF---GHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSG-------S~DGsIrIWDlrs~k~I~tl~---~h~s~ItsIafSPdg~~LaSgS~DGtIrIWD 1894 (2004)
..+.+++++| +..+.+. ..++.|++||..+++.+..+. ++...+.+++++|+|..+++...++.|++|+
T Consensus 241 ~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 241 RNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp TCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred CCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 6788999999 3333332 334589999999999888873 5667789999999998888888899999999
Q ss_pred ccC
Q psy8748 1895 IRA 1897 (2004)
Q Consensus 1895 Lrt 1897 (2004)
+..
T Consensus 320 ~~~ 322 (329)
T 3fvz_A 320 LTE 322 (329)
T ss_dssp EEE
T ss_pred CCc
Confidence 763
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-09 Score=124.49 Aligned_cols=237 Identities=11% Similarity=0.014 Sum_probs=164.2
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-EeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQ-VIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~-ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
..+.+++++++|.++++...++.|..||.. ++... ........+.+++++++++.+++...++.|..|+. ++.
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~---- 130 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK---- 130 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC----
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC----
Confidence 467899999999988887778899999975 44322 22234567899999999998888777889999987 321
Q ss_pred ceEEEEEecCccceeeeEEeCCCcEEEee-cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTTLLTGS-GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~LlSgS-~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrI 1850 (2004)
.. ..........+..+.+.+++.+++++ .++.|..||. +++............+.+++++++|+..++...++.|.+
T Consensus 131 ~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 208 (299)
T 2z2n_A 131 IR-EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGR 208 (299)
T ss_dssp EE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred EE-EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence 11 11122234557778887666666554 5689999999 666543223334556889999999986666656789999
Q ss_pred EECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1851 WDFREKKCVQT-FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1851 WDlrs~k~I~t-l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
||. +++.... ...+...+.+++++++|+.+++...++.|..||. ++. ...+........+.++++ ++|++.++..
T Consensus 209 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~ 284 (299)
T 2z2n_A 209 ITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME 284 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET
T ss_pred ECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec
Confidence 998 6654322 2234567899999999986666557789999998 443 334433344456889999 8888766654
Q ss_pred CCCeEEEEECCCC
Q psy8748 1930 DDNNVHVWDLLKT 1942 (2004)
Q Consensus 1930 sDGsIrIWDL~tg 1942 (2004)
.+.+..++..++
T Consensus 285 -~~~l~~~~~~~~ 296 (299)
T 2z2n_A 285 -CDKIGKLTLIKD 296 (299)
T ss_dssp -TTEEEEEEEC--
T ss_pred -CCcEEEEEcCcc
Confidence 667777776554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-11 Score=136.97 Aligned_cols=241 Identities=12% Similarity=0.042 Sum_probs=171.4
Q ss_pred ceEEEEEecCCCEEE-EeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCc
Q psy8748 1736 WVMSVAFAQSGNFVA-CGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQ 1814 (2004)
Q Consensus 1736 ~ItsLafSPdg~~La-SGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~ 1814 (2004)
...+++++++|+.++ +.+.++.|.+|+..+.. ...........+.++++.+++.++++..++.|..||...+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG------TTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----------EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc------cceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCce
Confidence 678999999999777 55778899999875431 11111122345677888766666666668899999987654
Q ss_pred eeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q psy8748 1815 RIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1815 ~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWD 1894 (2004)
.. .........+.+++++++|+.+++...++.|.+|+..+.............+.+++++++|+.+++...++.|.+||
T Consensus 99 ~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 99 QT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp CE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred Ee-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 43 22223335689999999998777766788999998765543332223334678999999998777776788999999
Q ss_pred ccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q psy8748 1895 IRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQ 1974 (2004)
Q Consensus 1895 Lrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG 1974 (2004)
.......... ......+..++++++|+++++...++.|.+||............+...+.+++++++|+++++...++
T Consensus 178 ~~~~~~~~~~--~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 178 AESNNQVVLP--FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp TTTCCEEECC--CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred cCCCceEeec--ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence 8766543322 22225688999999998777777788999999866544332223446789999999999888888899
Q ss_pred eEEEEECCCCe
Q psy8748 1975 FVKVWQESNTI 1985 (2004)
Q Consensus 1975 tIrIWdlstg~ 1985 (2004)
.|++|+....+
T Consensus 256 ~v~~~~~~~~~ 266 (270)
T 1rwi_B 256 RVVKLTSLEHH 266 (270)
T ss_dssp EEEEECCCGGG
T ss_pred EEEEEcCCCcc
Confidence 99999988754
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-11 Score=157.89 Aligned_cols=247 Identities=11% Similarity=0.078 Sum_probs=171.9
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCC-----eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCe-------
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDG-----KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNM------- 1757 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DG-----tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGt------- 1757 (2004)
+|...+..++|||||++||.+..++ .|++||+.+|+.......+ ..+.+++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3555789999999999998776543 8999999999876643222 22677999999999999887765
Q ss_pred ---------EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEeec-----CCeEEEEECCC------Cc-e
Q psy8748 1758 ---------CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGSG-----DMKIVTWNLET------GQ-R 1815 (2004)
Q Consensus 1758 ---------IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~-----DGtI~IWDl~t------g~-~ 1815 (2004)
|++|++.++.. ....+.....+...+..+.|++++. ++.++. +..|++||+.+ +. .
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~--~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQS--EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred ccccCCCCEEEEEECCCCcc--cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence 99999976431 1112222223445567788886654 555443 57899999986 43 2
Q ss_pred eEEeeccccCCeEEEEECCCCCEEEEEECCC----eEEEEECCCCe--EEEEEecCCC--CeEEEEEeCCCCEEEEEECC
Q psy8748 1816 IHEVAQAHIGDVVSISLSPDGQYFVTGSVDK----SCKLWDFREKK--CVQTFFGHEA--DVNSVCFHPSGLAFATGSED 1887 (2004)
Q Consensus 1816 i~~il~~h~~~ItsLafSPdg~~LaSGS~DG----sIrIWDlrs~k--~I~tl~~h~s--~ItsIafSPdg~~LaSgS~D 1887 (2004)
...+ ..+...+.. .|+++|+.|+..+.++ .|.+||+.++. ....+..+.. .+..++|++++.++++...|
T Consensus 279 ~~~l-~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 279 WVKL-IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp CEEE-ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred eEEe-eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 3233 344445544 4888999888776543 69999998764 1234444543 68889999888788888888
Q ss_pred Ce--EEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC----CCeEEEEECCCCe
Q psy8748 1888 KT--ARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD----DNNVHVWDLLKTT 1943 (2004)
Q Consensus 1888 Gt--IrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs----DGsIrIWDL~tge 1943 (2004)
|. |.+||+.+++....+..+ ...+..++++|+++.++.... .++|+.||+.+++
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 85 566777677766666433 466888999999987664432 4789999998876
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-10 Score=139.32 Aligned_cols=252 Identities=9% Similarity=-0.050 Sum_probs=178.3
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcce
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k 1773 (2004)
....+++. +++.+++...++.|.+||..+++.+..+.. ......+++++++..+++...++.|.+||..++ +
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~------~ 116 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY------E 116 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT------E
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC------e
Confidence 45677774 345555666679999999999999888864 456889999999855555547899999998764 2
Q ss_pred EEEEEecCc-----cceeeeEEeCCCcEEEee--cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC-
Q psy8748 1774 VIRELLGYE-----GFLSSCRFIDDTTLLTGS--GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD- 1845 (2004)
Q Consensus 1774 ~i~sl~gh~-----~~Vssvafsdd~~LlSgS--~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D- 1845 (2004)
....+.... .....+++ +++.++++. .++.|.+||..+++....+.. ......++++++|++++++..+
T Consensus 117 ~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~ 193 (328)
T 3dsm_A 117 ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGY 193 (328)
T ss_dssp EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBC
T ss_pred EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc--CCCccceEEcCCCCEEEEECCCc
Confidence 333333222 14455666 556666665 489999999999987765532 3345788999999876666544
Q ss_pred ---------CeEEEEECCCCeEEEEEecC-CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEE
Q psy8748 1846 ---------KSCKLWDFREKKCVQTFFGH-EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTS 1915 (2004)
Q Consensus 1846 ---------GsIrIWDlrs~k~I~tl~~h-~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~Its 1915 (2004)
+.|.+||..+++....+... ......++|+|+++.++++.. .|.+||..+++................
T Consensus 194 ~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~g 271 (328)
T 3dsm_A 194 EGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYG 271 (328)
T ss_dssp TTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEE
T ss_pred cCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEE
Confidence 78999999999877666532 346899999999999888754 899999988775321111111356789
Q ss_pred EEEcC-CCCEEEEE----eCCCeEEEEECCCCeeeEEEccCCCCeEEEEE
Q psy8748 1916 CAVSS-SGRYIFCG----SDDNNVHVWDLLKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1916 LafSP-dG~~LaSG----SsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF 1960 (2004)
++++| +++++++. ..++.|.+||.. ++.+..+.. ......++|
T Consensus 272 i~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 272 LTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp EEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred EEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence 99999 55555555 568899999987 888877753 233455555
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.9e-11 Score=157.42 Aligned_cols=279 Identities=11% Similarity=0.003 Sum_probs=184.6
Q ss_pred CCCCEEEEEeCCC-----eEEEEECCCCceEEEee------CCCCceEEEEEecCCCEEEE-----eecCCeEEEEEcCC
Q psy8748 1702 GDSRHCVSGSLDG-----KLIIWDTWTGNKTQVIP------LRSAWVMSVAFAQSGNFVAC-----GGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1702 PDG~~LASGS~DG-----tIrVWDl~Tgk~l~ti~------~Ht~~ItsLafSPdg~~LaS-----GS~DGtIrVWDl~t 1765 (2004)
|+|++++....++ .|.+.+...++....+. +|...+.++.|+|||++|+. |+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 7788877665543 34555554554433332 35557899999999999984 44456899999987
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCe-------------EEEEECCCCceeE-Ee--eccccCCeE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMK-------------IVTWNLETGQRIH-EV--AQAHIGDVV 1828 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGt-------------I~IWDl~tg~~i~-~i--l~~h~~~It 1828 (2004)
++.... ..+. ......+.|++++ .++.++.+.. |++|++.++.... .+ ...+...+.
T Consensus 157 g~~~~~----~~~~--~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~ 230 (695)
T 2bkl_A 157 GEWSKV----DVIE--GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL 230 (695)
T ss_dssp CCBCSS----CCBS--CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred CCCcCC----cccC--cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence 642200 0111 1112578888665 5777776655 9999999876321 12 223446788
Q ss_pred EEEECCCCCEEEEEECCC----eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC----CCeEEEEEccCCce
Q psy8748 1829 SISLSPDGQYFVTGSVDK----SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE----DKTARLFDIRADQQ 1900 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS~DG----sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~----DGtIrIWDLrtgk~ 1900 (2004)
++.|+|||++++.++.++ .|++||..++.. ..+..+...+....+ ++|. ++..+. ++.|.+||+.++..
T Consensus 231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~ 307 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR 307 (695)
T ss_dssp EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSG
T ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCc
Confidence 999999999998887666 688887655543 444455556666666 5666 544443 57899999987653
Q ss_pred --eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEccC-CCCeEEEEEcCCCCEEEEEE----C
Q psy8748 1901 --IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL-KTTHNGVLSGH-ENRVTSISLSPNGMALVTSS----W 1972 (2004)
Q Consensus 1901 --i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~-tge~l~tL~gH-s~~VtsLaFSPDg~~LaSgS----~ 1972 (2004)
...+........+..++++ ++.+++++..||..++|.+. ++.....+..+ .+.|..+++++++..++... .
T Consensus 308 ~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 386 (695)
T 2bkl_A 308 ASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTT 386 (695)
T ss_dssp GGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTE
T ss_pred cCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 2333333324457788888 77788888899988887654 45556666655 66788889999998776332 3
Q ss_pred CCeEEEEECCCCeEEEEEE
Q psy8748 1973 DQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1973 DGtIrIWdlstg~l~k~Ik 1991 (2004)
.++|++||+.+++. +.++
T Consensus 387 P~~v~~~d~~~g~~-~~l~ 404 (695)
T 2bkl_A 387 PRQIYKTSVSTGKS-ELWA 404 (695)
T ss_dssp EEEEEEEETTTCCE-EEEE
T ss_pred CCEEEEEECCCCcE-EEEe
Confidence 57899999998763 4443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-11 Score=161.80 Aligned_cols=196 Identities=9% Similarity=-0.008 Sum_probs=135.3
Q ss_pred eEEEEeCCCCEEEEEeCCCe-------------EEEEECCCCc----eEEEeeCCCCceEEEEEecCCCEEEEeecCC--
Q psy8748 1696 NSVHYSGDSRHCVSGSLDGK-------------LIIWDTWTGN----KTQVIPLRSAWVMSVAFAQSGNFVACGGMDN-- 1756 (2004)
Q Consensus 1696 tsLaFSPDG~~LASGS~DGt-------------IrVWDl~Tgk----~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG-- 1756 (2004)
..++|+|||+.|+.++.|+. |++|++.++. .+.....+...+.++.|+|||++|+.++.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 46899999999999988776 9999998876 2223334556789999999999988877665
Q ss_pred --eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec----CCeEEEEECCCCce--eEEeeccc-cCCe
Q psy8748 1757 --MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG----DMKIVTWNLETGQR--IHEVAQAH-IGDV 1827 (2004)
Q Consensus 1757 --tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~----DGtI~IWDl~tg~~--i~~il~~h-~~~I 1827 (2004)
.|.+|+..++ . ...+..+........+.+++ ++..+. ++.|.+||+.++.. ...+...+ ...+
T Consensus 251 ~~~l~~~~~~~~----~---~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l 322 (695)
T 2bkl_A 251 ENDVYWKRPGEK----D---FRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL 322 (695)
T ss_dssp EEEEEEECTTCS----S---CEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred ceEEEEEcCCCC----c---eEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence 5555543322 1 22233344444555556666 555543 58999999987753 22333333 4457
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECC-CCeEEEEEecC-CCCeEEEEEeCCCCEEEEEEC----CCeEEEEEccCCce
Q psy8748 1828 VSISLSPDGQYFVTGSVDKSCKLWDFR-EKKCVQTFFGH-EADVNSVCFHPSGLAFATGSE----DKTARLFDIRADQQ 1900 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS~DGsIrIWDlr-s~k~I~tl~~h-~s~ItsIafSPdg~~LaSgS~----DGtIrIWDLrtgk~ 1900 (2004)
..++|+ ++.++++...||..++|.+. +++....+..+ ...+..+.++|+++.++.... .++|++||+.+++.
T Consensus 323 ~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 323 LSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 888888 67788888889988877654 35555556544 567788889999887664432 46899999988764
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.6e-10 Score=143.94 Aligned_cols=274 Identities=15% Similarity=0.073 Sum_probs=197.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC
Q psy8748 1702 GDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY 1781 (2004)
Q Consensus 1702 PDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh 1781 (2004)
+.+.++++...++.|.+||..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+... ..+....+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~----t~~~v~~i~~- 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMK----EPTTVAEIKI- 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSS----SCCEEEEEEC-
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCC----CCcEeEEEec-
Confidence 445567788889999999999999998887543 4679999999999999999999999999511 1233344443
Q ss_pred ccceeeeEEe-----CCCcEEEee-cCCeEEEEECCCCceeEEeecc---------c-cCCeEEEEECCCCCEEEEE-EC
Q psy8748 1782 EGFLSSCRFI-----DDTTLLTGS-GDMKIVTWNLETGQRIHEVAQA---------H-IGDVVSISLSPDGQYFVTG-SV 1844 (2004)
Q Consensus 1782 ~~~Vssvafs-----dd~~LlSgS-~DGtI~IWDl~tg~~i~~il~~---------h-~~~ItsLafSPdg~~LaSG-S~ 1844 (2004)
......+.++ ++.+++++. .++.|.++|..+.+.+..+... | ...+..+..++++..+++. ..
T Consensus 239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 2335677888 455555544 5699999999998887665321 1 1257888889887655544 45
Q ss_pred CCeEEEEECCCCeEE--EEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcC-C--CCC-CCeEEEE
Q psy8748 1845 DKSCKLWDFREKKCV--QTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLP-P--NKN-SGFTSCA 1917 (2004)
Q Consensus 1845 DGsIrIWDlrs~k~I--~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~-~--~~~-s~ItsLa 1917 (2004)
+|.|.++|..+.+.. ..+ .......++.|+|+|++++++. .+++|.++|+.+++....... . .|. ..+. +
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~- 395 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-F- 395 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-E-
T ss_pred CCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-e-
Confidence 699999998875432 222 3345677899999999987766 578999999999988776643 1 122 1222 2
Q ss_pred EcCCCCEE-EEEe-CCCeEEEEECCC-------CeeeEEEccCCCCeEEEEEcCCCCEEEEEEC-------CCeEEEEEC
Q psy8748 1918 VSSSGRYI-FCGS-DDNNVHVWDLLK-------TTHNGVLSGHENRVTSISLSPNGMALVTSSW-------DQFVKVWQE 1981 (2004)
Q Consensus 1918 fSPdG~~L-aSGS-sDGsIrIWDL~t-------ge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~-------DGtIrIWdl 1981 (2004)
++|++..+ +++. .++.|.++|..+ ++.+..+......-..+..+|+++++.+... .+.|.+||+
T Consensus 396 ~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 396 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence 68875544 4443 468999999987 6788888765444455778999999998763 358999999
Q ss_pred CCC
Q psy8748 1982 SNT 1984 (2004)
Q Consensus 1982 stg 1984 (2004)
.+.
T Consensus 476 ~~~ 478 (567)
T 1qks_A 476 KAM 478 (567)
T ss_dssp GGC
T ss_pred Ccc
Confidence 865
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.35 E-value=8.3e-11 Score=133.82 Aligned_cols=239 Identities=11% Similarity=0.072 Sum_probs=166.2
Q ss_pred ceeEEEEeCCCCEEE-EEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1694 KVNSVHYSGDSRHCV-SGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LA-SGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
...+++++++|++++ +.+.++.|.+||..++........+...+.+++++++|+.+++.. ++.|.+|+.+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~---- 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ---- 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC----
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE----
Confidence 778999999999777 546789999999765543322223335678999999999666665 88999999765321
Q ss_pred eEEEEEe-cCccceeeeEEeCCCcEEEe-ecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEE
Q psy8748 1773 KVIRELL-GYEGFLSSCRFIDDTTLLTG-SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1773 k~i~sl~-gh~~~Vssvafsdd~~LlSg-S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrI 1850 (2004)
.... ........+++.+++.++++ ..++.|.+|+..+...... .......+.+++++++|+.+++...++.|.+
T Consensus 100 ---~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 100 ---TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp ---EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-CCCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred ---eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-ccccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 1111 22245677888766555554 5678999998665543321 1223346788999999986666666789999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1851 WDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1851 WDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
||............+...+.+++++++|..+++...++.|.+||........ . .......+..++++++|+++++...
T Consensus 176 ~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~-~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-L-PFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-C-CCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred EecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-e-ccCCCCCceeEEECCCCCEEEEECC
Confidence 9988766444333333678999999999777777678899999987544332 2 2222356889999999998888888
Q ss_pred CCeEEEEECCCCe
Q psy8748 1931 DNNVHVWDLLKTT 1943 (2004)
Q Consensus 1931 DGsIrIWDL~tge 1943 (2004)
++.|++|+....+
T Consensus 254 ~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 254 NDRVVKLTSLEHH 266 (270)
T ss_dssp GTEEEEECCCGGG
T ss_pred CCEEEEEcCCCcc
Confidence 9999999986544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-09 Score=129.85 Aligned_cols=273 Identities=12% Similarity=0.006 Sum_probs=186.0
Q ss_pred eCCCCEEEEEeC--CC---eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee----------cCCeEEEEEcCC
Q psy8748 1701 SGDSRHCVSGSL--DG---KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG----------MDNMCTVYDLNN 1765 (2004)
Q Consensus 1701 SPDG~~LASGS~--DG---tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS----------~DGtIrVWDl~t 1765 (2004)
.|+++++++... .+ .|.+||..+++.+..+.....+ .++++|||++++++. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 467776666543 22 8899999999998888765554 999999999998886 367899999975
Q ss_pred CCCCCcceEEEEEecC-------ccceeeeEEeCC-CcEEEeec--CCeEEEEECCCCceeEE-eeccccCCeEEEEECC
Q psy8748 1766 RDSTGAAKVIRELLGY-------EGFLSSCRFIDD-TTLLTGSG--DMKIVTWNLETGQRIHE-VAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh-------~~~Vssvafsdd-~~LlSgS~--DGtI~IWDl~tg~~i~~-il~~h~~~ItsLafSP 1834 (2004)
.+ ....+.-. ......+.++++ .+++++.. ++.|.++| .+++.... +. ..+ ++.+.|
T Consensus 107 ~~------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--~~~---~~~~~~ 174 (373)
T 2mad_H 107 FL------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--SPT---CYHIHP 174 (373)
T ss_pred Cc------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--CCc---eEEEEe
Confidence 43 22222111 123446777755 45666653 57899999 99887755 32 111 244555
Q ss_pred CC-CEEEEEECCCeEEEEECCCCeEEEEEe-----cCCCCe-EEEEEeCCCCEEEEEECCCeEEEEEccCCce--eEEEc
Q psy8748 1835 DG-QYFVTGSVDKSCKLWDFREKKCVQTFF-----GHEADV-NSVCFHPSGLAFATGSEDKTARLFDIRADQQ--IATYL 1905 (2004)
Q Consensus 1835 dg-~~LaSGS~DGsIrIWDlrs~k~I~tl~-----~h~s~I-tsIafSPdg~~LaSgS~DGtIrIWDLrtgk~--i~t~~ 1905 (2004)
++ +.+++.+.||.+.++|. +++.+.... ....++ ....+.+++..++..+.++.+.+.|+.++.. ...+.
T Consensus 175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~ 253 (373)
T 2mad_H 175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID 253 (373)
T ss_pred CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeee
Confidence 54 45667778999999999 777653322 111221 2345667666555555788999999875532 22221
Q ss_pred CCC--------CCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC-E
Q psy8748 1906 PPN--------KNSGFTSCAVSSSGRYIFCGSD----------DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM-A 1966 (2004)
Q Consensus 1906 ~~~--------~~s~ItsLafSPdG~~LaSGSs----------DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~-~ 1966 (2004)
... .......+.++++++.++++.. .+.|.++|+.+++.+..+.. .....+++|+|||+ .
T Consensus 254 ~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~ 332 (373)
T 2mad_H 254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPD 332 (373)
T ss_pred ecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeE
Confidence 100 1123445789999998888654 35799999999999988853 44689999999999 7
Q ss_pred EEEEE-CCCeEEEEECCCCeEEEE
Q psy8748 1967 LVTSS-WDQFVKVWQESNTIVWKV 1989 (2004)
Q Consensus 1967 LaSgS-~DGtIrIWdlstg~l~k~ 1989 (2004)
++++. .++.|.+||..+++..+.
T Consensus 333 l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 333 LYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEcCCCCeEEEEECCCCCEEee
Confidence 88877 489999999999876655
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.5e-10 Score=130.30 Aligned_cols=214 Identities=11% Similarity=0.033 Sum_probs=168.5
Q ss_pred CCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCc-cceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccc
Q psy8748 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYE-GFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAH 1823 (2004)
Q Consensus 1745 dg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~-~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h 1823 (2004)
.++.|++++.++.|.+||.+++ +....+..+. ..+.++.+.+++.+++ +.++.|..||. +++.+.++....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG------~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK------EIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT------EEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCT
T ss_pred CCcEEEeeCCCCEEEEEECCCC------eEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCC
Confidence 4688999999999999998665 4445555444 4567778877777666 56788999999 788887765433
Q ss_pred cCCeEEEEECCCCCEEEEEEC-CCeEEEEECCCCeEEEEEec------CCCCeEEEEEeCCCCEEEEEECCCeEEEEEcc
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSV-DKSCKLWDFREKKCVQTFFG------HEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~-DGsIrIWDlrs~k~I~tl~~------h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLr 1896 (2004)
...+.++.+.++|+.+++.+. ++.|..+|. +++.+..+.. +......+++.++|+++++...++.|..||..
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 457889999999999999887 788888885 6777766642 22245567889999999999999999999998
Q ss_pred CCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCC------CCeEEEEEcCCCCEEEEE
Q psy8748 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHE------NRVTSISLSPNGMALVTS 1970 (2004)
Q Consensus 1897 tgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs------~~VtsLaFSPDg~~LaSg 1970 (2004)
|+.+.++... .....+.+.++|+++++++.++.|..+|..+|+.+..+..+. ..+..+...++|..+++.
T Consensus 155 -G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 155 -GQLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp -SCEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred -CCEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 9999888653 234567888999999999889999999999999999886432 237889999999988887
Q ss_pred E
Q psy8748 1971 S 1971 (2004)
Q Consensus 1971 S 1971 (2004)
.
T Consensus 231 ~ 231 (276)
T 3no2_A 231 W 231 (276)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-09 Score=127.46 Aligned_cols=244 Identities=12% Similarity=0.174 Sum_probs=171.3
Q ss_pred CCCceEEEEEecCCCEEEE-------eecCCeEEEEEcCCCCCCCcceEEEE--EecCccceeeeEEeCC-CcEEEeecC
Q psy8748 1733 RSAWVMSVAFAQSGNFVAC-------GGMDNMCTVYDLNNRDSTGAAKVIRE--LLGYEGFLSSCRFIDD-TTLLTGSGD 1802 (2004)
Q Consensus 1733 Ht~~ItsLafSPdg~~LaS-------GS~DGtIrVWDl~t~~~~~~~k~i~s--l~gh~~~Vssvafsdd-~~LlSgS~D 1802 (2004)
.-....+++|+++++.+++ +..++.|..|+..+++. ..... ..++...+..+.+.++ +.+++++..
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~----~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~ 91 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK----TVICKPEVNGYGGIPAGCQCDRDANQLFVADMR 91 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE----EEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE----EEEEecccCCCCCCCceEEEecCCCcEEEEECC
Confidence 3345689999999988888 67788999999765431 11110 0123456778888877 777777766
Q ss_pred CeEEEEECCCCceeEEe-ecc----ccCCeEEEEECCCCCEEEEEECC---------------CeEEEEECCCCeEEEEE
Q psy8748 1803 MKIVTWNLETGQRIHEV-AQA----HIGDVVSISLSPDGQYFVTGSVD---------------KSCKLWDFREKKCVQTF 1862 (2004)
Q Consensus 1803 GtI~IWDl~tg~~i~~i-l~~----h~~~ItsLafSPdg~~LaSGS~D---------------GsIrIWDlrs~k~I~tl 1862 (2004)
+.|..||.. ++.. .+ ... ....+.+++++++|+++++...+ +.|..||.. ++... +
T Consensus 92 ~~l~~~d~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~ 167 (314)
T 1pjx_A 92 LGLLVVQTD-GTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-V 167 (314)
T ss_dssp TEEEEEETT-SCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-E
T ss_pred CCEEEEeCC-CCEE-EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-e
Confidence 689999998 6643 22 111 12357899999999877766554 578888765 54433 3
Q ss_pred ecCCCCeEEEEEe----CCCCEEEEE-ECCCeEEEEEcc-CCcee--EEE-cCCCCC-CCeEEEEEcCCCCEEEEEeCCC
Q psy8748 1863 FGHEADVNSVCFH----PSGLAFATG-SEDKTARLFDIR-ADQQI--ATY-LPPNKN-SGFTSCAVSSSGRYIFCGSDDN 1932 (2004)
Q Consensus 1863 ~~h~s~ItsIafS----Pdg~~LaSg-S~DGtIrIWDLr-tgk~i--~t~-~~~~~~-s~ItsLafSPdG~~LaSGSsDG 1932 (2004)
..+......++|+ ++++.++++ ..++.|.+||.. +++.. ..+ ....+. .....++++++|+++++...++
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 2334457889999 999766555 457899999986 34321 111 112222 4578899999999888888889
Q ss_pred eEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEE-EECCCeEEEEECCCC
Q psy8748 1933 NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVT-SSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1933 sIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaS-gS~DGtIrIWdlstg 1984 (2004)
.|.+||..+++....+..+...+.+++|+++++.|+. ...++.|..|++...
T Consensus 248 ~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 9999999878777777777788999999999995554 455688999998753
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.2e-10 Score=129.43 Aligned_cols=237 Identities=12% Similarity=0.100 Sum_probs=174.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEeeCCC-CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEec
Q psy8748 1702 GDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS-AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLG 1780 (2004)
Q Consensus 1702 PDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht-~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~g 1780 (2004)
..+++|++++.|+.|++||.++|+.+..+..+. ..+.++.++|+|++++ +.++.|..||. ++ +.+..+..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G------~~~W~~~~ 73 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG------RELWNIAA 73 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS------CEEEEEEC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC------CEEEEEcC
Confidence 346789999999999999999999999998876 5789999999999888 34677999987 43 23333433
Q ss_pred C-ccceeeeEEeCCC-cEEEeec-CCeEEEEECCCCceeEEeec-----cccCCeEEEEECCCCCEEEEEECCCeEEEEE
Q psy8748 1781 Y-EGFLSSCRFIDDT-TLLTGSG-DMKIVTWNLETGQRIHEVAQ-----AHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852 (2004)
Q Consensus 1781 h-~~~Vssvafsdd~-~LlSgS~-DGtI~IWDl~tg~~i~~il~-----~h~~~ItsLafSPdg~~LaSGS~DGsIrIWD 1852 (2004)
. ...+.++.+.+++ .+++.+. ++.|..+|. +|+.+.++.. .+......+++.++|+++++...++.|..||
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d 152 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA 152 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEEC
Confidence 3 2356666666554 4555565 788888886 6666555421 1222345567899999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCC----CCCCeEEEEEcCCCCEEEEE
Q psy8748 1853 FREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN----KNSGFTSCAVSSSGRYIFCG 1928 (2004)
Q Consensus 1853 lrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~----~~s~ItsLafSPdG~~LaSG 1928 (2004)
.. ++.+..+... ..+.++...++|+.+++++.+++|..+|..+++.+.++.... ....+..++..++|+++++.
T Consensus 153 ~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 153 PN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp TT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 88 9988888654 456678889999999999888899999999999998885321 12336788889999988876
Q ss_pred eCC--------CeEEEEEC-CCCeeeEEEcc
Q psy8748 1929 SDD--------NNVHVWDL-LKTTHNGVLSG 1950 (2004)
Q Consensus 1929 SsD--------GsIrIWDL-~tge~l~tL~g 1950 (2004)
... +..+++++ .+++.+..+..
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 231 WQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp ECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred ccCccccccccCCceEEEECCCCCEEEEecC
Confidence 421 23355555 46666666643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-08 Score=125.05 Aligned_cols=239 Identities=8% Similarity=-0.053 Sum_probs=165.0
Q ss_pred EEEEeCCCCEEEEEe----------CCCeEEEEECCCCceEEEeeCC-------CCceEEEEEecCCCEEEEeec--CCe
Q psy8748 1697 SVHYSGDSRHCVSGS----------LDGKLIIWDTWTGNKTQVIPLR-------SAWVMSVAFAQSGNFVACGGM--DNM 1757 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS----------~DGtIrVWDl~Tgk~l~ti~~H-------t~~ItsLafSPdg~~LaSGS~--DGt 1757 (2004)
.++++|||++++.+. .++.|.+||..+++.+..+... ......+.|+|||++++++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 789999999988875 3678999999999888877543 123468999999999998874 478
Q ss_pred EEEEEcCCCCCCCcceEEEE-EecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeec----cccCC-eEEEE
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRE-LLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ----AHIGD-VVSIS 1831 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~s-l~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~----~h~~~-ItsLa 1831 (2004)
|.++| .+++ .... +. ....+ .+.......+++.+.||.+.++|. +++....... ....+ .....
T Consensus 150 v~viD-~t~~------~~~~~i~-~~~~~-~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~ 219 (373)
T 2mad_H 150 VGLVV-QGGS------SDDQLLS-SPTCY-HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPA 219 (373)
T ss_pred EEEEE-CCCC------EEeEEcC-CCceE-EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecce
Confidence 99999 7653 2233 22 11211 111112345677888999999999 7776532210 11111 12345
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCe--EEEEEec----------CCCCeEEEEEeCCCCEEEEEEC----------CCe
Q psy8748 1832 LSPDGQYFVTGSVDKSCKLWDFREKK--CVQTFFG----------HEADVNSVCFHPSGLAFATGSE----------DKT 1889 (2004)
Q Consensus 1832 fSPdg~~LaSGS~DGsIrIWDlrs~k--~I~tl~~----------h~s~ItsIafSPdg~~LaSgS~----------DGt 1889 (2004)
+.+++..++..+.+|.+.+.|+.... .+..+.- .......+.++|+++.++++.. ++.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 56666655555578899999987542 2222211 1122444789999998888653 357
Q ss_pred EEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCeeeEEE
Q psy8748 1890 ARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR-YIFCGS-DDNNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1890 IrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~-~LaSGS-sDGsIrIWDL~tge~l~tL 1948 (2004)
|.++|..+++.+.++... .....++|+|||+ .++++. .++.|.+||+.+++.+..+
T Consensus 300 V~VID~~t~~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 300 VTSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEECCCCEEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 999999999998888433 3478999999999 777777 4899999999999998874
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-10 Score=149.25 Aligned_cols=274 Identities=13% Similarity=0.059 Sum_probs=178.2
Q ss_pred CCCCEEEEEeCCCe---EEEE--ECC---CCceEEEe------eCCCCceEEEEEecCCCEEEEeecC-----CeEEEEE
Q psy8748 1702 GDSRHCVSGSLDGK---LIIW--DTW---TGNKTQVI------PLRSAWVMSVAFAQSGNFVACGGMD-----NMCTVYD 1762 (2004)
Q Consensus 1702 PDG~~LASGS~DGt---IrVW--Dl~---Tgk~l~ti------~~Ht~~ItsLafSPdg~~LaSGS~D-----GtIrVWD 1762 (2004)
|+|++++....++. -.+| +.. .++....+ .+|...+.++.|+|||++|+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 88888776554432 4444 443 34333222 2233468899999999999887654 4699999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCC--------------eEEEEECCCCceeE-Eeec--cccC
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM--------------KIVTWNLETGQRIH-EVAQ--AHIG 1825 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DG--------------tI~IWDl~tg~~i~-~il~--~h~~ 1825 (2004)
+.+++. ... ......+..+.|+++..++.++.++ .|++|++.++.... .+.. .+..
T Consensus 196 l~tg~~------~~~-~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~ 268 (741)
T 1yr2_A 196 VADGKP------LAD-ELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK 268 (741)
T ss_dssp TTTCCE------EEE-EEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred CCCCCC------CCc-cCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence 987642 111 1111223577888765577666554 39999998776321 1222 2233
Q ss_pred CeEEEEECCCCCEEEEEECCC-----eEEEEECCCC--eEEEEEecCCCCeEEEEEeCCCCEEEEEECC----CeEEEEE
Q psy8748 1826 DVVSISLSPDGQYFVTGSVDK-----SCKLWDFREK--KCVQTFFGHEADVNSVCFHPSGLAFATGSED----KTARLFD 1894 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSGS~DG-----sIrIWDlrs~--k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D----GtIrIWD 1894 (2004)
.+..+.|+|||++++..+.++ .|++||+.++ +....+..+...+.... +|+|+.|+..+.+ +.|.+||
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d 347 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVD 347 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEe
Confidence 588999999999988887554 8999999876 31345555555555553 4888888887763 4599999
Q ss_pred ccCCc-eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEcc-CCCCeEEEEEcCCCCEEEEE-
Q psy8748 1895 IRADQ-QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL-KTTHNGVLSG-HENRVTSISLSPNGMALVTS- 1970 (2004)
Q Consensus 1895 Lrtgk-~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~-tge~l~tL~g-Hs~~VtsLaFSPDg~~LaSg- 1970 (2004)
+.++. ....+. +.+...+..++++ ++.++++...||..++|.+. ++.....+.. +.+.|..++++++++.++..
T Consensus 348 ~~~~~~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 425 (741)
T 1yr2_A 348 LSGSTPRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSF 425 (741)
T ss_dssp CSSSSCEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEE
T ss_pred CCCCccccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEE
Confidence 98752 333333 2333446677777 56777888889887777543 4556666654 36778999999998766533
Q ss_pred ---ECCCeEEEEECCCCe
Q psy8748 1971 ---SWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1971 ---S~DGtIrIWdlstg~ 1985 (2004)
...++|+.||+.+++
T Consensus 426 ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 426 SSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTEEEEEEEEETTTTE
T ss_pred cCCCCCCEEEEEECCCCc
Confidence 234789999999875
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-09 Score=123.22 Aligned_cols=242 Identities=13% Similarity=0.116 Sum_probs=165.8
Q ss_pred cccccceeEEEEeCCCCEEEE-------EeCCCeEEEEECCCCceEEEee----CCCCceEEEEEecC-CCEEEEeecCC
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVS-------GSLDGKLIIWDTWTGNKTQVIP----LRSAWVMSVAFAQS-GNFVACGGMDN 1756 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LAS-------GS~DGtIrVWDl~Tgk~l~ti~----~Ht~~ItsLafSPd-g~~LaSGS~DG 1756 (2004)
.+.-....+++|+++|..+++ +..++.|.+||..+++...... ++...+.+++++++ ++.+++.. .+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence 444556789999999988877 5678999999988887643322 14466899999999 66555544 44
Q ss_pred eEEEEEcCCCCCCCcceEE-EEE-e-cCccceeeeEEeCCCcEEEeec-C---------------CeEEEEECCCCceeE
Q psy8748 1757 MCTVYDLNNRDSTGAAKVI-REL-L-GYEGFLSSCRFIDDTTLLTGSG-D---------------MKIVTWNLETGQRIH 1817 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i-~sl-~-gh~~~Vssvafsdd~~LlSgS~-D---------------GtI~IWDl~tg~~i~ 1817 (2004)
.|.+|+.+ +. .... ... . .....+..+.+.+++.+++++. + +.|..||.. ++..
T Consensus 93 ~l~~~d~~-g~----~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~- 165 (314)
T 1pjx_A 93 GLLVVQTD-GT----FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI- 165 (314)
T ss_dssp EEEEEETT-SC----EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-
T ss_pred CEEEEeCC-CC----EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-
Confidence 68889886 32 1111 000 0 1123467788877666665554 3 578888876 5433
Q ss_pred EeeccccCCeEEEEEC----CCCCEEEEEE-CCCeEEEEECC-CCe-----EEEEEecCC-CCeEEEEEeCCCCEEEEEE
Q psy8748 1818 EVAQAHIGDVVSISLS----PDGQYFVTGS-VDKSCKLWDFR-EKK-----CVQTFFGHE-ADVNSVCFHPSGLAFATGS 1885 (2004)
Q Consensus 1818 ~il~~h~~~ItsLafS----Pdg~~LaSGS-~DGsIrIWDlr-s~k-----~I~tl~~h~-s~ItsIafSPdg~~LaSgS 1885 (2004)
.. ..+......++++ ++++.++++. .++.|.+||.. +++ ....+..+. ..+..++++++|+++++..
T Consensus 166 ~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 166 QV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred Ee-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 22 2334456889999 9997766654 57899999976 443 222333333 5688999999999888877
Q ss_pred CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q psy8748 1886 EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLK 1941 (2004)
Q Consensus 1886 ~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~t 1941 (2004)
.++.|.+||..+++....+..+ ...+.+++++++|+.|++++ .++.|..|++..
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcCCCCcEeEEEeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8899999999877766655432 25689999999999665554 568899999764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-09 Score=130.19 Aligned_cols=281 Identities=13% Similarity=0.034 Sum_probs=193.1
Q ss_pred EeCCCCEEEEEeC-----CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee----------cCCeEEEEEcC
Q psy8748 1700 YSGDSRHCVSGSL-----DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG----------MDNMCTVYDLN 1764 (2004)
Q Consensus 1700 FSPDG~~LASGS~-----DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS----------~DGtIrVWDl~ 1764 (2004)
..|+++.+++... ++.|.+.|..+++.+..+.....+ . +.++|||++++++. .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 3488888777765 679999999999999999876665 4 99999999887775 36789999998
Q ss_pred CCCCCCcceEEEEEecC-------ccceeeeEEeCCC-cEEEeec--CCeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1765 NRDSTGAAKVIRELLGY-------EGFLSSCRFIDDT-TLLTGSG--DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh-------~~~Vssvafsdd~-~LlSgS~--DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
+.+ ....+.-. ......+.+++++ +++++.. ++.|.++|..+++.+..+.... . ...+..
T Consensus 118 t~~------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g---~-~~~~P~ 187 (386)
T 3sjl_D 118 TLL------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---C-YHIFPT 187 (386)
T ss_dssp TCC------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E-EEEEEE
T ss_pred CCe------EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC---c-ceeecC
Confidence 653 33333211 1245567777554 5666653 6899999999999887663221 1 222333
Q ss_pred CCCEEEEEECCCeEEEEECCC-CeEEEEEecC----CCCeE-EEEEe-CCCCEEEEEECCCeEEEEEccCCce--eEEEc
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFRE-KKCVQTFFGH----EADVN-SVCFH-PSGLAFATGSEDKTARLFDIRADQQ--IATYL 1905 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs-~k~I~tl~~h----~s~It-sIafS-Pdg~~LaSgS~DGtIrIWDLrtgk~--i~t~~ 1905 (2004)
..+.+++.+.||.+.+.++.. ++.......+ ..++. ...|. ++|++++ .+.+|+|++.|+.++.. ...+.
T Consensus 188 g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~ 266 (386)
T 3sjl_D 188 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVE 266 (386)
T ss_dssp ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEE
T ss_pred CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeeccee
Confidence 456777888899999999876 5543222111 12221 24565 5775555 55689999999976542 22221
Q ss_pred --------CCCCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC-E
Q psy8748 1906 --------PPNKNSGFTSCAVSSSGRYIFCGSD----------DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM-A 1966 (2004)
Q Consensus 1906 --------~~~~~s~ItsLafSPdG~~LaSGSs----------DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~-~ 1966 (2004)
..-.......++++++++.+++... .+.|.++|+.+++.+..+.. ..++.++++++|++ +
T Consensus 267 ~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ 345 (386)
T 3sjl_D 267 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPL 345 (386)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCE
T ss_pred ccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeE
Confidence 0001123345778999998888753 25799999999999988863 23788999999996 6
Q ss_pred EEEEE-CCCeEEEEECCCCeEEEEEEeec
Q psy8748 1967 LVTSS-WDQFVKVWQESNTIVWKVLKVYN 1994 (2004)
Q Consensus 1967 LaSgS-~DGtIrIWdlstg~l~k~Ik~~~ 1994 (2004)
|+++. .++.|.++|..+++..+.++...
T Consensus 346 ly~tn~~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 346 LYALSTGDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEecCCC
Confidence 66654 58999999999998877776553
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-08 Score=114.63 Aligned_cols=239 Identities=9% Similarity=-0.012 Sum_probs=171.3
Q ss_pred CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec-CCeEEEEECC
Q psy8748 1733 RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-DMKIVTWNLE 1811 (2004)
Q Consensus 1733 Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~-DGtI~IWDl~ 1811 (2004)
....+.++++.++|+.+++...++.|.+|+.. +. ... .........+..+.+.+++.++++.. ++.|..||..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~----~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR----IKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC----EEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc----eEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 45678999999999988887778999999876 32 111 11222335677787776666665554 7889999988
Q ss_pred CCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeE
Q psy8748 1812 TGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQT-FFGHEADVNSVCFHPSGLAFATGSEDKTA 1890 (2004)
Q Consensus 1812 tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~t-l~~h~s~ItsIafSPdg~~LaSgS~DGtI 1890 (2004)
++............+.+++++++|+++++...++.|..||.. ++.... +......+.++++.++|+.+++...++.|
T Consensus 92 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 92 -GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp -SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred -CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence 554322222234678999999999877776668899999987 554322 22345678999999999966666667899
Q ss_pred EEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EccCCCCeEEEEEcCCCCEEEE
Q psy8748 1891 RLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGV-LSGHENRVTSISLSPNGMALVT 1969 (2004)
Q Consensus 1891 rIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~t-L~gHs~~VtsLaFSPDg~~LaS 1969 (2004)
..||. +++... +........+..++++++|++.++....+.|.+||. +++.... ...+...+.+++++++|++.++
T Consensus 170 ~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 170 GRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe
Confidence 99998 555443 333333456889999999987777767788999998 5544332 3345667899999999997777
Q ss_pred EECCCeEEEEECC
Q psy8748 1970 SSWDQFVKVWQES 1982 (2004)
Q Consensus 1970 gS~DGtIrIWdls 1982 (2004)
...++.|..|+..
T Consensus 247 ~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 247 EWGANQIGRITND 259 (300)
T ss_dssp ETTTTEEEEECTT
T ss_pred ccCCCeEEEECCC
Confidence 6667899999984
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.21 E-value=3.9e-09 Score=129.69 Aligned_cols=253 Identities=12% Similarity=0.083 Sum_probs=172.7
Q ss_pred EEEEeCCCCEEEEEe----------CCCeEEEEECCCCceEEEeeCCC-------CceEEEEEecCCCEEEEeec--CCe
Q psy8748 1697 SVHYSGDSRHCVSGS----------LDGKLIIWDTWTGNKTQVIPLRS-------AWVMSVAFAQSGNFVACGGM--DNM 1757 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS----------~DGtIrVWDl~Tgk~l~ti~~Ht-------~~ItsLafSPdg~~LaSGS~--DGt 1757 (2004)
.++++|||++++++. .++.|.+||..+++.+..+.... .....+.|+|||++++++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 389999999887765 36789999999999998875432 24567899999999888864 689
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCC-CceeEEe---eccccCCeE-EEE
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLET-GQRIHEV---AQAHIGDVV-SIS 1831 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~t-g~~i~~i---l~~h~~~It-sLa 1831 (2004)
|.++|+.++ +....+.-.. . . ..+. ....+++.+.||.+.+.+..+ ++..... +......+. ...
T Consensus 162 VsVID~~t~------~vv~tI~v~g-~-~-~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~ 232 (386)
T 3sjl_D 162 VGVVDLEGK------AFKRMLDVPD-C-Y-HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA 232 (386)
T ss_dssp EEEEETTTT------EEEEEEECCS-E-E-EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCE
T ss_pred EEEEECCCC------cEEEEEECCC-c-c-eeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccce
Confidence 999999865 3444443211 1 1 2223 345677888999999999986 5543211 111111221 235
Q ss_pred EC-CCCCEEEEEECCCeEEEEECCCCe--EEEEEe--c--------CCCCeEEEEEeCCCCEEEEEEC----------CC
Q psy8748 1832 LS-PDGQYFVTGSVDKSCKLWDFREKK--CVQTFF--G--------HEADVNSVCFHPSGLAFATGSE----------DK 1888 (2004)
Q Consensus 1832 fS-Pdg~~LaSGS~DGsIrIWDlrs~k--~I~tl~--~--------h~s~ItsIafSPdg~~LaSgS~----------DG 1888 (2004)
|. ++|++++ .+.+|.|++.|..... .+..+. . .......++++++++.+++... .+
T Consensus 233 ~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~ 311 (386)
T 3sjl_D 233 YSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR 311 (386)
T ss_dssp EETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred eEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCC
Confidence 54 5665544 5668999999997654 222221 0 1123445778999998888653 25
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCC
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR-YIFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPN 1963 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~-~LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPD 1963 (2004)
.|.++|+.+++.+..+... ..+..+++++|++ +|++.. .++.|.++|..+++.+.++..- +.-..+.+++|
T Consensus 312 ~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 312 FVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EEEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 7999999999999888543 3577899999997 677655 4899999999999999988642 33344555554
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-09 Score=144.16 Aligned_cols=245 Identities=11% Similarity=0.046 Sum_probs=162.0
Q ss_pred cccceeEEEEeCCCCEEEEEeCC-----CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCe--------
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLD-----GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNM-------- 1757 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~D-----GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGt-------- 1757 (2004)
|...+..++|||||++||.+..+ ..|++||+.+|+.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44578899999999999877654 4699999999987653 112222357899999 98888876553
Q ss_pred ------EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecC-----CeEEEEECCCC--ceeEEeeccc
Q psy8748 1758 ------CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGD-----MKIVTWNLETG--QRIHEVAQAH 1823 (2004)
Q Consensus 1758 ------IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~D-----GtI~IWDl~tg--~~i~~il~~h 1823 (2004)
|++|++.++.. ....+.....+...+..+.|++++ .++..+.+ ..|++||+.++ .....+. .+
T Consensus 239 ~~~~~~v~~~~lgt~~~--~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~ 315 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQS--ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI-PD 315 (741)
T ss_dssp CCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE-CS
T ss_pred CCCCCEEEEEECCCCch--hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec-CC
Confidence 88888865421 112222222233357788888766 45555543 48999999877 3122333 33
Q ss_pred cCCeEEEEECCCCCEEEEEECC----CeEEEEECCCC--eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEcc-
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVD----KSCKLWDFREK--KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR- 1896 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~D----GsIrIWDlrs~--k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLr- 1896 (2004)
...+.... +|+|+.|+..+.+ +.|.+||+.++ .....+..+...+..+.|+ ++.++++...||..++|.+.
T Consensus 316 ~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 316 LKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp SSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET
T ss_pred CCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence 44444443 4889988888764 45999999874 3344444455556778887 56678888889987777654
Q ss_pred CCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe----CCCeEEEEECCCCe
Q psy8748 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS----DDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1897 tgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS----sDGsIrIWDL~tge 1943 (2004)
+++....+..+ ....+..+.++|+++.++... ..++|++||+.+++
T Consensus 394 ~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 394 DGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp TSCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 45555554322 245678899999988665332 24789999998876
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.14 E-value=8e-09 Score=128.67 Aligned_cols=275 Identities=15% Similarity=0.071 Sum_probs=189.3
Q ss_pred CCCCEEEEEeC-C----CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee----------cCCeEEEEEcCCC
Q psy8748 1702 GDSRHCVSGSL-D----GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG----------MDNMCTVYDLNNR 1766 (2004)
Q Consensus 1702 PDG~~LASGS~-D----GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS----------~DGtIrVWDl~t~ 1766 (2004)
++++.+++... + +.|.++|..+++.+..+.....+ .+.++||+++++++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 45665555443 2 69999999999999999876666 899999999888776 4678999999765
Q ss_pred CCCCcceEEEEEecC-------ccceeeeEEeCCC-cEEEeec--CCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1767 DSTGAAKVIRELLGY-------EGFLSSCRFIDDT-TLLTGSG--DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh-------~~~Vssvafsdd~-~LlSgS~--DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
+ ....+.-. ......+.+++++ +++++.. ++.|.++|..+++.+..+..+.. ....|++
T Consensus 160 ~------vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-----~~~~p~g 228 (426)
T 3c75_H 160 L------PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-----YHIFPAS 228 (426)
T ss_dssp C------EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEE
T ss_pred c------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-----eeeccCC
Confidence 3 33333211 1234567777554 5666653 58899999999998766643221 2233433
Q ss_pred -CEEEEEECCCeEEEEECCCCeEEEE----EecCCCCe-EEEEEeCCCCEEEEEECCCeEEEEEccCCceeE--EEcCC-
Q psy8748 1837 -QYFVTGSVDKSCKLWDFREKKCVQT----FFGHEADV-NSVCFHPSGLAFATGSEDKTARLFDIRADQQIA--TYLPP- 1907 (2004)
Q Consensus 1837 -~~LaSGS~DGsIrIWDlrs~k~I~t----l~~h~s~I-tsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~--t~~~~- 1907 (2004)
+.+++.+.||.+.+.+..+++.... +.....++ ..+.+.+++..++..+..|.|.+.|........ .+...
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~ 308 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALT 308 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSC
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecc
Confidence 5666777888888888865554422 11111221 245678998888888889999999987544221 11100
Q ss_pred -C------CCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC-EEEE
Q psy8748 1908 -N------KNSGFTSCAVSSSGRYIFCGSD----------DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM-ALVT 1969 (2004)
Q Consensus 1908 -~------~~s~ItsLafSPdG~~LaSGSs----------DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~-~LaS 1969 (2004)
. .......++++++++.+++... ++.|.++|+.+.+.+..+... ....+++|+|||+ ++++
T Consensus 309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv 387 (426)
T 3c75_H 309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYA 387 (426)
T ss_dssp TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEE
T ss_pred ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEE
Confidence 0 0011223689999998877653 357999999999999888632 3588999999999 8888
Q ss_pred EE-CCCeEEEEECCCCeEEEEE
Q psy8748 1970 SS-WDQFVKVWQESNTIVWKVL 1990 (2004)
Q Consensus 1970 gS-~DGtIrIWdlstg~l~k~I 1990 (2004)
+. .++.|.++|..+++..+.+
T Consensus 388 ~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 388 LSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EETTTTEEEEEETTTCCEEEEE
T ss_pred EcCCCCeEEEEECCCCCEEEEe
Confidence 88 5999999999998776665
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.11 E-value=4.8e-08 Score=114.52 Aligned_cols=231 Identities=10% Similarity=0.068 Sum_probs=157.6
Q ss_pred eCCCCceEEEEEecCC-CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEE
Q psy8748 1731 PLRSAWVMSVAFAQSG-NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWN 1809 (2004)
Q Consensus 1731 ~~Ht~~ItsLafSPdg-~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWD 1809 (2004)
..+.....+..|++++ ..+++...++.|..|+..++. . .. ......+.++.+.+++.++++. ++.|.+||
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~----~---~~-~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d 79 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ----V---QR-VTMDAPVSSVALRQSGGYVATI-GTKFCALN 79 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----E---EE-EECSSCEEEEEEBTTSSEEEEE-TTEEEEEE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc----E---EE-EeCCCceEEEEECCCCCEEEEE-CCeEEEEE
Confidence 3344556788999954 566666678899999987642 1 11 1234568888888777777776 67899999
Q ss_pred CCCCceeEEeecc---ccCCeEEEEECCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEEecCCCCeEEEEEe
Q psy8748 1810 LETGQRIHEVAQA---HIGDVVSISLSPDGQYFVTGSV-----------DKSCKLWDFREKKCVQTFFGHEADVNSVCFH 1875 (2004)
Q Consensus 1810 l~tg~~i~~il~~---h~~~ItsLafSPdg~~LaSGS~-----------DGsIrIWDlrs~k~I~tl~~h~s~ItsIafS 1875 (2004)
..+++........ ....+..++++|+|+++++... .+.|+.+|.. ++. ..+.......+.++|+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~s 157 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWS 157 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEEEC
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceEEc
Confidence 9887654222111 1234788999999996654432 1344444443 333 2233334557899999
Q ss_pred CCCCEEEE-EECCCeEEEEEc--cCCcee--EEE-cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc
Q psy8748 1876 PSGLAFAT-GSEDKTARLFDI--RADQQI--ATY-LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS 1949 (2004)
Q Consensus 1876 Pdg~~LaS-gS~DGtIrIWDL--rtgk~i--~t~-~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~ 1949 (2004)
|+++.++. .+.++.|.+||+ .++... ..+ ...........++++++|++.++...++.|..||..+++.+..+.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 99987654 455789999997 445432 111 112222456789999999988888888899999999899999988
Q ss_pred cCCCCeEEEEEc-CCCCEEEEEEC
Q psy8748 1950 GHENRVTSISLS-PNGMALVTSSW 1972 (2004)
Q Consensus 1950 gHs~~VtsLaFS-PDg~~LaSgS~ 1972 (2004)
.+...+++++|. |+++.|+.++.
T Consensus 238 ~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCceEEEEeCCCCCEEEEEcC
Confidence 887889999998 88877665543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-08 Score=123.48 Aligned_cols=240 Identities=12% Similarity=0.062 Sum_probs=166.4
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCC--eEEEEEcCCCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN--MCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG--tIrVWDl~t~~~~~ 1770 (2004)
.....++|+++++++++...++.|++||..++........... .. ++|+++++.++++..++ .|.+|+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~--- 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW--- 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT---
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCc---
Confidence 4688999999999878877789999999988777665554333 34 99999999998888766 78888875432
Q ss_pred cceEEEEEec-CccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEe---eccccCCe--EEEEECCC-CCEEEEE
Q psy8748 1771 AAKVIRELLG-YEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEV---AQAHIGDV--VSISLSPD-GQYFVTG 1842 (2004)
Q Consensus 1771 ~~k~i~sl~g-h~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~i---l~~h~~~I--tsLafSPd-g~~LaSG 1842 (2004)
.......... ......++++.+ ++.++++..++.|+.||..++...... ..+....- ..++|+|+ +.++++-
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 1111111112 445667888887 677777888899999999877643210 11222222 28999996 4444555
Q ss_pred ECCCeEEEEECCCCeEEEEEecCC---------------CCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcC
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFFGHE---------------ADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~~h~---------------s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
..++.|+.|+.... +..+.++. .....++++++|+++++-+ .++.|+.||..++........
T Consensus 286 ~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~ 363 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQ 363 (409)
T ss_dssp TTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCC
Confidence 56788999997644 33333332 3478999999999777777 789999999877764333321
Q ss_pred CC------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1907 PN------------KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1907 ~~------------~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
.. .......++++++|.++++-..++.|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 00 1235789999999888888778888988875
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-08 Score=125.68 Aligned_cols=241 Identities=11% Similarity=0.037 Sum_probs=169.5
Q ss_pred EEEEeCCCCEEEEEe----------CCCeEEEEECCCCceEEEeeCC-------CCceEEEEEecCCCEEEEeec--CCe
Q psy8748 1697 SVHYSGDSRHCVSGS----------LDGKLIIWDTWTGNKTQVIPLR-------SAWVMSVAFAQSGNFVACGGM--DNM 1757 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS----------~DGtIrVWDl~Tgk~l~ti~~H-------t~~ItsLafSPdg~~LaSGS~--DGt 1757 (2004)
.++++|||++++++. .++.|.++|..+++.+..+... ......+.|+|||++++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 789999999887765 3678999999999998887632 223567899999999998874 578
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEe---eccccCC-eEEEEEC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV---AQAHIGD-VVSISLS 1833 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~i---l~~h~~~-ItsLafS 1833 (2004)
|.+.|..+. +....+.-.. . ..+.......+++.+.||.+.+.+..+++..... +.....+ ...+.+.
T Consensus 202 VsVID~~t~------kvv~~I~v~g-~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 202 VGVVDLEGK------TFDRMLDVPD-C-YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS 273 (426)
T ss_dssp EEEEETTTT------EEEEEEECCS-E-EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC
T ss_pred EEEEECCCC------eEEEEEEcCC-c-eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec
Confidence 999999865 3333333211 1 1122223355777888999998898666544211 1111111 1235678
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEE--EEEec----------CCCCeEEEEEeCCCCEEEEEEC----------CCeEE
Q psy8748 1834 PDGQYFVTGSVDKSCKLWDFREKKCV--QTFFG----------HEADVNSVCFHPSGLAFATGSE----------DKTAR 1891 (2004)
Q Consensus 1834 Pdg~~LaSGS~DGsIrIWDlrs~k~I--~tl~~----------h~s~ItsIafSPdg~~LaSgS~----------DGtIr 1891 (2004)
+++..++..+..|.+.+.|....... ..+.- .......++++|+++.+++... ++.|.
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 89888888888899999998755421 11110 0111223789999888777642 35799
Q ss_pred EEEccCCceeEEEcCCCCCCCeEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCeeeEEE
Q psy8748 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSSSGR-YIFCGS-DDNNVHVWDLLKTTHNGVL 1948 (2004)
Q Consensus 1892 IWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~-~LaSGS-sDGsIrIWDL~tge~l~tL 1948 (2004)
++|..+.+.+.++... .....+.|+|||+ ++++.. .++.|.++|+.+++.++.+
T Consensus 354 VID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 354 VLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9999999999888432 2467899999999 888888 5899999999999999887
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-08 Score=134.26 Aligned_cols=280 Identities=12% Similarity=0.058 Sum_probs=195.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCc-----------eEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAW-----------VMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~-----------ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
+..+++++.++.|..+|..+|+.+..+...... ...+++ ++..+++++.|+.+..+|..+++.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~---- 150 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE---- 150 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE----
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE----
Confidence 456777777899999999999999888654221 122333 367888889999999999987642
Q ss_pred eEEEEEecC-c----cceeeeEEeCCCcEEEeec------CCeEEEEECCCCceeEEeeccccC----------------
Q psy8748 1773 KVIRELLGY-E----GFLSSCRFIDDTTLLTGSG------DMKIVTWNLETGQRIHEVAQAHIG---------------- 1825 (2004)
Q Consensus 1773 k~i~sl~gh-~----~~Vssvafsdd~~LlSgS~------DGtI~IWDl~tg~~i~~il~~h~~---------------- 1825 (2004)
.-..... . ..+.......++.+++++. +|.|+.||..+|+.+.+.......
T Consensus 151 --~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 151 --VWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp --EEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred --EeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence 2222221 1 1222222223556666654 699999999999988665322111
Q ss_pred ---------------CeEEEEECCCCCEEEEEECCC-------------------eEEEEECCCCeEEEEEecCC-----
Q psy8748 1826 ---------------DVVSISLSPDGQYFVTGSVDK-------------------SCKLWDFREKKCVQTFFGHE----- 1866 (2004)
Q Consensus 1826 ---------------~ItsLafSPdg~~LaSGS~DG-------------------sIrIWDlrs~k~I~tl~~h~----- 1866 (2004)
....++++++++.+++++.++ .|..+|.++++.+..+....
T Consensus 229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd 308 (677)
T 1kb0_A 229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD 308 (677)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence 113578889999999887664 59999999999888775421
Q ss_pred ----CCeEEEEEeCCC---CEEEEEECCCeEEEEEccCCceeEEEcCCCCC---------CCe-----------------
Q psy8748 1867 ----ADVNSVCFHPSG---LAFATGSEDKTARLFDIRADQQIATYLPPNKN---------SGF----------------- 1913 (2004)
Q Consensus 1867 ----s~ItsIafSPdg---~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~---------s~I----------------- 1913 (2004)
....-+....+| ..++.++.+|.++++|..+|+.+..+...... ..+
T Consensus 309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 122233344477 67899999999999999999988776432110 000
Q ss_pred -------EEEEEcCCCCEEEEEeCC-------------------------------------------CeEEEEECCCCe
Q psy8748 1914 -------TSCAVSSSGRYIFCGSDD-------------------------------------------NNVHVWDLLKTT 1943 (2004)
Q Consensus 1914 -------tsLafSPdG~~LaSGSsD-------------------------------------------GsIrIWDL~tge 1943 (2004)
..++++|++.++++...+ |.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 146889998888876432 789999999999
Q ss_pred eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1944 HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1944 ~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
.+..+. +..++.+..+..++..++.++.||.+++||..+++.+..++.
T Consensus 469 ~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 469 AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 988876 334455556677888899999999999999999977655554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-08 Score=131.03 Aligned_cols=284 Identities=11% Similarity=0.032 Sum_probs=189.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCc----------e-EEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAW----------V-MSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~----------I-tsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
+..+++++.++.|+.+|..+|+.+..+..+... + ..+.. .+..+++++.||.|..+|..+++.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 556777888899999999999999988654321 0 11222 3678888999999999999876532211
Q ss_pred eEEEEEecCccceeeeEEeCCCcEEEee------cCCeEEEEECCCCceeEEeeccc-----------------------
Q psy8748 1773 KVIRELLGYEGFLSSCRFIDDTTLLTGS------GDMKIVTWNLETGQRIHEVAQAH----------------------- 1823 (2004)
Q Consensus 1773 k~i~sl~gh~~~Vssvafsdd~~LlSgS------~DGtI~IWDl~tg~~i~~il~~h----------------------- 1823 (2004)
.... -......+.+.....++.+++++ .+|.|+.||..+|+.+.+.....
T Consensus 148 ~~~~-~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRA-DHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCS-CTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcC-CCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 1100 00000111111111245566654 36899999999999876653210
Q ss_pred -------cCCeEEEEECCCCCEEEEEECCCe-------------------EEEEECCCCeEEEEEecC--C-------CC
Q psy8748 1824 -------IGDVVSISLSPDGQYFVTGSVDKS-------------------CKLWDFREKKCVQTFFGH--E-------AD 1868 (2004)
Q Consensus 1824 -------~~~ItsLafSPdg~~LaSGS~DGs-------------------IrIWDlrs~k~I~tl~~h--~-------s~ 1868 (2004)
......++++|+++.+++++.++. |..||.++++.+..+... . .+
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 011125788898899999988764 999999999998877642 1 12
Q ss_pred eEEEEEeCCCC---EEEEEECCCeEEEEEccCCceeEEEcCCCC--------------------------C---------
Q psy8748 1869 VNSVCFHPSGL---AFATGSEDKTARLFDIRADQQIATYLPPNK--------------------------N--------- 1910 (2004)
Q Consensus 1869 ItsIafSPdg~---~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~--------------------------~--------- 1910 (2004)
+.......+|+ .++.++.+|.++++|.++|+.+........ .
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 22222333565 788999999999999999998754422110 0
Q ss_pred --CCeEEEEEcCCCCEEEEEeC---------------------------------------------CCeEEEEECCCCe
Q psy8748 1911 --SGFTSCAVSSSGRYIFCGSD---------------------------------------------DNNVHVWDLLKTT 1943 (2004)
Q Consensus 1911 --s~ItsLafSPdG~~LaSGSs---------------------------------------------DGsIrIWDL~tge 1943 (2004)
.....++++|+..+++++.. +|.|+.||+.+++
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 00123688998888887632 3789999999999
Q ss_pred eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1944 HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1944 ~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
.+..+..+. ++..-.+...+.+++.|+.||.++.||.++|+.+-..+
T Consensus 467 ~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 467 AAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp EEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 998886543 33334566678899999999999999999997654444
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-07 Score=113.81 Aligned_cols=260 Identities=11% Similarity=0.029 Sum_probs=172.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCc
Q psy8748 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYE 1782 (2004)
Q Consensus 1703 DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~ 1782 (2004)
++..++.++.+|.|..+|..+|+.+................ +..+++++.+|.|..+|..+++.. .......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~------W~~~~~~ 173 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVK------WTVNLDM 173 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEE------EEEECCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEE------EEEeCCC
Confidence 35678888889999999999999988776543322222222 557888888999999999776421 1111111
Q ss_pred cce-----eeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCC------eEEEEECC--CCCEEEEEECCCeEE
Q psy8748 1783 GFL-----SSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD------VVSISLSP--DGQYFVTGSVDKSCK 1849 (2004)
Q Consensus 1783 ~~V-----ssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~------ItsLafSP--dg~~LaSGS~DGsIr 1849 (2004)
... .... ..++.+++++.+|.+..+|..+++............ +..+...| .+..+++++.+|.+.
T Consensus 174 ~~~~~~~~~~~~-~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~ 252 (376)
T 3q7m_A 174 PSLSLRGESAPT-TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLT 252 (376)
T ss_dssp -----CCCCCCE-EETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEE
T ss_pred CceeecCCCCcE-EECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEE
Confidence 110 1111 235678889999999999999998876553221100 00011111 356788888899999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1850 IWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
.+|.++++.+..... .....+.. ++..+++++.+|.+..+|..+++.......... ..+..... .+..+++++
T Consensus 253 ~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~ 325 (376)
T 3q7m_A 253 ALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGD 325 (376)
T ss_dssp EEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEEC
T ss_pred EEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEe
Confidence 999999987766542 23444444 356788888999999999999998877742211 11222222 357888999
Q ss_pred CCCeEEEEECCCCeeeEEEccCCCCeEE-EEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1930 DDNNVHVWDLLKTTHNGVLSGHENRVTS-ISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1930 sDGsIrIWDL~tge~l~tL~gHs~~Vts-LaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
.+|.++++|..+++.+.........+.. ... .+..|+.++.||.|+.|+
T Consensus 326 ~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 326 SEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 9999999999999998877654343322 222 245788899999999987
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-07 Score=113.60 Aligned_cols=270 Identities=13% Similarity=0.034 Sum_probs=179.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCC---------CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceE
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS---------AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht---------~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
+..+++++.++.|..+|..+|+.+....... ..+.+ ....++..+++++.+|.|..+|..+++.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~------ 125 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTV------ 125 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCE------
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCE------
Confidence 5678888889999999999999988776532 22322 2222467788888899999999987642
Q ss_pred EEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCC----eEEEEECCCCCEEEEEECCCeEEE
Q psy8748 1775 IRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD----VVSISLSPDGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1775 i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~----ItsLafSPdg~~LaSGS~DGsIrI 1850 (2004)
.-............ ...++.+++++.++.|..+|..+|+............ ....... +..+++++.+|.+..
T Consensus 126 ~W~~~~~~~~~~~p-~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 126 AWQTKVAGEALSRP-VVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp EEEEECSSCCCSCC-EEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred EEEEeCCCceEcCC-EEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 11222111111111 2235688889999999999999998876553221100 0111222 457888888999999
Q ss_pred EECCCCeEEEEEecCCCC----eEE---EEEeC--CCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCC
Q psy8748 1851 WDFREKKCVQTFFGHEAD----VNS---VCFHP--SGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1851 WDlrs~k~I~tl~~h~s~----Its---IafSP--dg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPd 1921 (2004)
+|..+++.+......... +.. +...| .+..+++++.+|.+..+|..+++........ ....+.. +
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~~~~~--~ 276 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG----SVNDFIV--D 276 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----CEEEEEE--E
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----CCCCceE--E
Confidence 999999887766432110 000 11111 2457888888999999999999988776432 2334433 4
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1922 GRYIFCGSDDNNVHVWDLLKTTHNGVLSG-HENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1922 G~~LaSGSsDGsIrIWDL~tge~l~tL~g-Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
+..+++++.+|.|..+|..+++....... ....+..... .+..|+.++.+|.|.+||..+++.....+
T Consensus 277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 277 GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 67888888999999999999998877652 2222333333 35678899999999999999987544443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.3e-08 Score=115.24 Aligned_cols=236 Identities=14% Similarity=0.171 Sum_probs=159.9
Q ss_pred ccccccccceeEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1686 KSLKGHINKVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
..+..+.......+|+++|+ +++++..++.|..|+. +++ ...+..+...+.+++++++|+++++...++.|..|+.+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 34445566778999999999 5667777899999997 554 34555566778999999999977776666889999875
Q ss_pred CCCCCCcceEEEE-EecC-ccceeeeEEeCCCcEEE-----eec-------------CCeEEEEECCCCceeEEeecccc
Q psy8748 1765 NRDSTGAAKVIRE-LLGY-EGFLSSCRFIDDTTLLT-----GSG-------------DMKIVTWNLETGQRIHEVAQAHI 1824 (2004)
Q Consensus 1765 t~~~~~~~k~i~s-l~gh-~~~Vssvafsdd~~LlS-----gS~-------------DGtI~IWDl~tg~~i~~il~~h~ 1824 (2004)
+. ...... ..+. ...+..+.+.+++.++. |.. .+.|+.||..+++.... . ..
T Consensus 116 -g~----~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~-~--~~ 187 (305)
T 3dr2_A 116 -GQ----AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM-A--DL 187 (305)
T ss_dssp -SC----EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE-E--EE
T ss_pred -CC----EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE-e--cC
Confidence 21 122111 1111 12355677777766666 332 36788888877765422 2 34
Q ss_pred CCeEEEEECCCCCEEEEEECC------CeEEEEECCCCeEE--EEE-ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEc
Q psy8748 1825 GDVVSISLSPDGQYFVTGSVD------KSCKLWDFREKKCV--QTF-FGHEADVNSVCFHPSGLAFATGSEDKTARLFDI 1895 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSGS~D------GsIrIWDlrs~k~I--~tl-~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDL 1895 (2004)
.....++|+|+++.++++... +.|++||+..+... ..+ ........++++.++|++ .+++.+ .|.+||.
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS 265 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC
Confidence 557889999999988887765 68999998765411 111 112344567899999984 444444 5999998
Q ss_pred cCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1896 RADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1896 rtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
.++....+..+. .+.+++|+++++.|++++.++ ++.++
T Consensus 266 -~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 266 -DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp -TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred -CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 466666664433 478899999999999888765 44333
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-07 Score=110.42 Aligned_cols=225 Identities=13% Similarity=0.091 Sum_probs=152.8
Q ss_pred ceEEEEEecCC-CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCc
Q psy8748 1736 WVMSVAFAQSG-NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQ 1814 (2004)
Q Consensus 1736 ~ItsLafSPdg-~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~ 1814 (2004)
...+..|+|++ ..+++...++.|..|+..++. . ... .....+.++.+.+++.+++++.+ .|.+||..+++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~----~---~~~-~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGR----K---TVH-ALPFMGSALAKISDSKQLIASDD-GLFLRDTATGV 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE----E---EEE-ECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc----E---EEE-ECCCcceEEEEeCCCeEEEEECC-CEEEEECCCCc
Confidence 35678899974 466666678899999987542 1 111 12356788888877777777755 49999998887
Q ss_pred eeEEeecc---ccCCeEEEEECCCCCEEEEEEC------CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE-
Q psy8748 1815 RIHEVAQA---HIGDVVSISLSPDGQYFVTGSV------DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATG- 1884 (2004)
Q Consensus 1815 ~i~~il~~---h~~~ItsLafSPdg~~LaSGS~------DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSg- 1884 (2004)
........ ....+.+++++|+|+++++... .+.|..+| +++.. .+.........++|+|+++.++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEE
T ss_pred EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEE
Confidence 54221111 1235889999999996655432 25666666 45433 333333457899999999877655
Q ss_pred ECCCeEEEEEcc--CC-cee--EEE-cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEE
Q psy8748 1885 SEDKTARLFDIR--AD-QQI--ATY-LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI 1958 (2004)
Q Consensus 1885 S~DGtIrIWDLr--tg-k~i--~t~-~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsL 1958 (2004)
+.++.|.+||+. ++ ... ..+ ...........++++++|++.++...++.|.+||. +++.+..+..+...++++
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 456899999986 55 321 111 11222345678999999998887777789999998 677777777777789999
Q ss_pred EEc-CCCCEEEEEECC
Q psy8748 1959 SLS-PNGMALVTSSWD 1973 (2004)
Q Consensus 1959 aFS-PDg~~LaSgS~D 1973 (2004)
+|+ +++..|+.++..
T Consensus 277 af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 277 AFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEESTTSCEEEEEEBC
T ss_pred EEecCCCCEEEEEecC
Confidence 998 888777555443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-07 Score=109.50 Aligned_cols=229 Identities=15% Similarity=0.144 Sum_probs=155.0
Q ss_pred cccccceeEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1689 KGHINKVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
..+..--.+..|+++++ ++++...++.|..||..+++.. .+. ....+.+++++++|+++++ . ++.|.+||.+++.
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 33445566899999655 5666667899999999887653 333 3567999999999995554 3 5679999987542
Q ss_pred CCCcceEEEEEec--CccceeeeEEeCCCcEEEeec------------CCeEEEEECCCCceeEEeeccccCCeEEEEEC
Q psy8748 1768 STGAAKVIRELLG--YEGFLSSCRFIDDTTLLTGSG------------DMKIVTWNLETGQRIHEVAQAHIGDVVSISLS 1833 (2004)
Q Consensus 1768 ~~~~~k~i~sl~g--h~~~Vssvafsdd~~LlSgS~------------DGtI~IWDl~tg~~i~~il~~h~~~ItsLafS 1833 (2004)
......... ....+..+.+.+++.+++++. .+.|+.+|.. ++.. .. .........++|+
T Consensus 85 ----~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~-~~~~~~pngi~~s 157 (297)
T 3g4e_A 85 ----AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KY-FDQVDISNGLDWS 157 (297)
T ss_dssp ----EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EE-EEEESBEEEEEEC
T ss_pred ----EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EE-eeccccccceEEc
Confidence 222222111 123466778877777766652 2345555543 3322 22 2334456889999
Q ss_pred CCCCEEEEE-ECCCeEEEEEC--CCCeE-----EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEc
Q psy8748 1834 PDGQYFVTG-SVDKSCKLWDF--REKKC-----VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1834 Pdg~~LaSG-S~DGsIrIWDl--rs~k~-----I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~ 1905 (2004)
|+++.++++ +.++.|.+||+ .++.. ...+..+...+..++++++|++.++...++.|.+||..+++....+.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 999977555 45788999987 44432 22222334568899999999888777778899999999898887775
Q ss_pred CCCCCCCeEEEEEc-CCCCEEEEEeC
Q psy8748 1906 PPNKNSGFTSCAVS-SSGRYIFCGSD 1930 (2004)
Q Consensus 1906 ~~~~~s~ItsLafS-PdG~~LaSGSs 1930 (2004)
.+ ...+++++|. |+++.|++++.
T Consensus 238 ~p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 LP--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred CC--CCCceEEEEeCCCCCEEEEEcC
Confidence 44 2568999998 88887776654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.7e-09 Score=130.10 Aligned_cols=172 Identities=16% Similarity=0.103 Sum_probs=133.6
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------eEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN-----------KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk-----------~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
.++.+++++.+.++++|+.++ +++|++++.+ ...... +.. |+.++| ++++|+++ .+|.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999885 6669865433 112333 556 999999 89999999 889999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
+.... .......+...+..+.+...+ +++++.||.|.+||+.++.... +...|+|++|+|+| ++.|
T Consensus 113 v~sl~------~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg 178 (388)
T 1xip_A 113 LEELS------EFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVL 178 (388)
T ss_dssp SSSTT------CEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEE
T ss_pred chhhh------ccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEE
Confidence 97643 122334445566777766544 8889999999999999887642 34689999999999 6889
Q ss_pred ECCCeEEEEECCCCeE--EEEE------e---cCCCCeEEEEEeCCCCEEEEEE
Q psy8748 1843 SVDKSCKLWDFREKKC--VQTF------F---GHEADVNSVCFHPSGLAFATGS 1885 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~--I~tl------~---~h~s~ItsIafSPdg~~LaSgS 1885 (2004)
..||.+++|+...+.. ..++ . +|...|.++.|.+++.++++-+
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999999887775 5555 2 3678899999999998887633
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.3e-08 Score=114.44 Aligned_cols=233 Identities=12% Similarity=0.100 Sum_probs=157.8
Q ss_pred eEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec-CC
Q psy8748 1726 KTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-DM 1803 (2004)
Q Consensus 1726 ~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~-DG 1803 (2004)
.+..+........+..|+++++ .++++..++.|..|+.. +. ...+......+..+.+.+++.++++.. ++
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~ 107 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-------VDVLLDATAFTNGNAVDAQQRLVHCEHGRR 107 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-------EEEEEESCSCEEEEEECTTSCEEEEETTTT
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-------EEEEeCCCCccceeeECCCCCEEEEECCCC
Confidence 3444444556678899999998 66777778899999873 21 123334456678888887777777765 47
Q ss_pred eEEEEECCCCceeEEeecc----ccCCeEEEEECCCCCEEEE----EEC-------------CCeEEEEECCCCeEEEEE
Q psy8748 1804 KIVTWNLETGQRIHEVAQA----HIGDVVSISLSPDGQYFVT----GSV-------------DKSCKLWDFREKKCVQTF 1862 (2004)
Q Consensus 1804 tI~IWDl~tg~~i~~il~~----h~~~ItsLafSPdg~~LaS----GS~-------------DGsIrIWDlrs~k~I~tl 1862 (2004)
.|..||.. ++.. .+... ....+.+++++++|++.++ |.. .+.|+.||..+++.....
T Consensus 108 ~v~~~~~~-g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 108 AITRSDAD-GQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp EEEEECTT-SCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred EEEEECCC-CCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 89999986 5432 22111 1234678999999997775 332 256888887666543332
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEECC------CeEEEEEccCCcee--EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q psy8748 1863 FGHEADVNSVCFHPSGLAFATGSED------KTARLFDIRADQQI--ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNV 1934 (2004)
Q Consensus 1863 ~~h~s~ItsIafSPdg~~LaSgS~D------GtIrIWDLrtgk~i--~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsI 1934 (2004)
.......++|+|+++.++++... +.|.+|++..+... ..+.. ........++++++|++.+ ++.+ .|
T Consensus 186 --~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lwv-~~~~-gv 260 (305)
T 3dr2_A 186 --DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLWS-SSGT-GV 260 (305)
T ss_dssp --EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEEE-CCSS-EE
T ss_pred --cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEEE-ecCC-cE
Confidence 34567889999999988877665 68999998755411 11211 1123345688999999544 4444 49
Q ss_pred EEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q psy8748 1935 HVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQF 1975 (2004)
Q Consensus 1935 rIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGt 1975 (2004)
.+|+. .++.+..+..+. .+.+++|+++++.|+.++.++.
T Consensus 261 ~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 261 CVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred EEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 99997 677777776555 5899999999998888887653
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.8e-09 Score=128.38 Aligned_cols=172 Identities=13% Similarity=0.085 Sum_probs=132.2
Q ss_pred ceeeeEEeCCCc-EEEeecCCeEEEEECCCCc---------eeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1784 FLSSCRFIDDTT-LLTGSGDMKIVTWNLETGQ---------RIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1784 ~Vssvafsdd~~-LlSgS~DGtI~IWDl~tg~---------~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
.+..+++++... +++|+.+ .+.+|+..... ........+.. |+.++| ++++|+++ .+|.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 467777776554 5555555 56669865332 11111224556 999999 89999999 7899999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCe
Q psy8748 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNN 1933 (2004)
Q Consensus 1854 rs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGs 1933 (2004)
++.........+...+.++.+.+. .+++++.||.+.+||+.++..... ...|++++|+|+| ++.|..||+
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~------~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL------AQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE------EESEEEEEECSSE--EEEEETTSC
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccc------cCCceEEEEcCCc--eEEEEcCCc
Confidence 877666667777888888877655 388889999999999998776532 2579999999999 788999999
Q ss_pred EEEEECCCCee--eEEE------c---cCCCCeEEEEEcCCCCEEEEE
Q psy8748 1934 VHVWDLLKTTH--NGVL------S---GHENRVTSISLSPNGMALVTS 1970 (2004)
Q Consensus 1934 IrIWDL~tge~--l~tL------~---gHs~~VtsLaFSPDg~~LaSg 1970 (2004)
+++|+...++. ..++ . +|...|.+|.|.+++.++++=
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 99999888775 5566 3 478899999999999988874
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-07 Score=116.29 Aligned_cols=237 Identities=8% Similarity=0.108 Sum_probs=161.2
Q ss_pred CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCC--eEEEEECC
Q psy8748 1735 AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDM--KIVTWNLE 1811 (2004)
Q Consensus 1735 ~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DG--tI~IWDl~ 1811 (2004)
.....++|+++++++++...++.|++||.+++. ....... ..... +++.+++ .++++..++ .|..|+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~------~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK------VTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE------EEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE------EEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence 357899999999988888888999999987542 2122222 22233 7777554 466666655 89999987
Q ss_pred CCceeEEe--e-ccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEE----EecCCCCe-E-EEEEeCC-CCEE
Q psy8748 1812 TGQRIHEV--A-QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQT----FFGHEADV-N-SVCFHPS-GLAF 1881 (2004)
Q Consensus 1812 tg~~i~~i--l-~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~t----l~~h~s~I-t-sIafSPd-g~~L 1881 (2004)
.+...... . ......+.+++++|++..|+++..++.|+.||..++..... ..++...- . .++|+|+ +.++
T Consensus 203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 66543222 1 21445678899999666666777788999999987763322 12222222 3 9999995 5555
Q ss_pred EEEECCCeEEEEEccCCceeEEEcCCC-------------CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEE
Q psy8748 1882 ATGSEDKTARLFDIRADQQIATYLPPN-------------KNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGV 1947 (2004)
Q Consensus 1882 aSgS~DGtIrIWDLrtgk~i~t~~~~~-------------~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~t 1947 (2004)
++...++.|+.|+.... . ..+.... .-.....++++++|+++++-. .++.|+.|+..++... .
T Consensus 283 v~d~~~~~I~~~~~~g~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~ 359 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGE-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-T 359 (409)
T ss_dssp EEETTTTEEEEECTTCC-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-E
T ss_pred EEeCCCCEEEEEecCCC-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-E
Confidence 56666789999997643 2 2221111 023478899999999777777 7899999998777643 3
Q ss_pred EccC---------------CCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1948 LSGH---------------ENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1948 L~gH---------------s~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
+.++ -....+++++++|.++++-..++.|+.++++
T Consensus 360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 360 VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 4333 2458999999998888887888888887753
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-08 Score=133.64 Aligned_cols=246 Identities=10% Similarity=0.080 Sum_probs=159.8
Q ss_pred ccccceeEEEEeCCCCEEEEE-----eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCC--------
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSG-----SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN-------- 1756 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASG-----S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG-------- 1756 (2004)
+|...+..++|||||++||-+ +.+..|++||+.+|+.+... .+......++|+ |++.|+.++.++
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 466789999999999998843 22357999999999865431 111113567899 999998888774
Q ss_pred -----eEEEEEcCCCCCCCcceEEEEEec-CccceeeeEEeCCCc-EEE-ee---cCCeEEEEECCCCceeEEeeccccC
Q psy8748 1757 -----MCTVYDLNNRDSTGAAKVIRELLG-YEGFLSSCRFIDDTT-LLT-GS---GDMKIVTWNLETGQRIHEVAQAHIG 1825 (2004)
Q Consensus 1757 -----tIrVWDl~t~~~~~~~k~i~sl~g-h~~~Vssvafsdd~~-LlS-gS---~DGtI~IWDl~tg~~i~~il~~h~~ 1825 (2004)
.|++|++.+... ....+..... +......+.+++++. ++. .. ..+.|+++|+.++......+..+..
T Consensus 204 ~~~~~~v~~~~lgt~~~--~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQE--DDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp -CCCCEEEEEETTSCGG--GCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred cCCCcEEEEEECCCCcc--cceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 389999875421 1122222223 344566778886665 333 22 2358999999876422222334444
Q ss_pred CeEEEEECCCCCEEEEEEC-C---CeEEEEECCCCeE--EEEEecCCCCeEEEEEeCCCCEEEEEECCC---eEEEEEcc
Q psy8748 1826 DVVSISLSPDGQYFVTGSV-D---KSCKLWDFREKKC--VQTFFGHEADVNSVCFHPSGLAFATGSEDK---TARLFDIR 1896 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSGS~-D---GsIrIWDlrs~k~--I~tl~~h~s~ItsIafSPdg~~LaSgS~DG---tIrIWDLr 1896 (2004)
..... ++++|..|+..+. + +.|..+|+.++.. ...+..+...+. .|++++++|+....++ .|++||+.
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 45444 6666776665553 2 5799999987653 234556666655 8899998877766544 68999987
Q ss_pred CCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCee
Q psy8748 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD----NNVHVWDLLKTTH 1944 (2004)
Q Consensus 1897 tgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD----GsIrIWDL~tge~ 1944 (2004)
.+ ....+..+ ....+..+.++++++.++....+ ++|+.||+.+++.
T Consensus 359 g~-~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 359 GK-RVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp SC-EEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CC-eeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 44 44444332 23456677888888877766554 8899999987754
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=4.3e-07 Score=108.24 Aligned_cols=223 Identities=16% Similarity=0.059 Sum_probs=150.3
Q ss_pred ceeEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1694 KVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1694 ~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
-..+.+|+|+++ ++++...++.|..||..+++.. .+. ....+.+++|+++|+++++. .+ .|.+||..++. .
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~----~ 121 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV----L 121 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC----E
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc----E
Confidence 456889999755 5566667899999998877543 333 34679999999999877765 44 48999986542 1
Q ss_pred eEEEEEec--CccceeeeEEeCCCcEEEeec-------CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE
Q psy8748 1773 KVIRELLG--YEGFLSSCRFIDDTTLLTGSG-------DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1773 k~i~sl~g--h~~~Vssvafsdd~~LlSgS~-------DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
........ ....+..+.+.+++.+++++. .+.|+.+| +++.. .+ .........++|+|+++.++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~-~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KL-FADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EE-EEEESSEEEEEECTTSCEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-Ee-eCCCcccCCeEEcCCCCEEEEEE
Confidence 11111111 123567788887777666653 25677777 44432 22 22334567899999999776654
Q ss_pred -CCCeEEEEECC--CC-e-----EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeE
Q psy8748 1844 -VDKSCKLWDFR--EK-K-----CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1844 -~DGsIrIWDlr--s~-k-----~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~It 1914 (2004)
.++.|.+||+. ++ . ....+......+.++++.++|++.++...++.|.+||. +++....+..+ ...++
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~--~~~~~ 274 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--GKQTT 274 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--CSBEE
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC--CCCcE
Confidence 56899999986 55 2 22233333456788999999987777767789999998 56666666433 24689
Q ss_pred EEEEc-CCCCEEEEEeCC
Q psy8748 1915 SCAVS-SSGRYIFCGSDD 1931 (2004)
Q Consensus 1915 sLafS-PdG~~LaSGSsD 1931 (2004)
+++|+ ++++.|++++..
T Consensus 275 ~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 275 CPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEESTTSCEEEEEEBC
T ss_pred EEEEecCCCCEEEEEecC
Confidence 99998 888877666543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.3e-09 Score=126.22 Aligned_cols=263 Identities=11% Similarity=0.069 Sum_probs=169.6
Q ss_pred cceeEEEEeCCCCEEEEEe--CCCeEEEEECCCCceEEEee-------CCCCceEEEEEecCCCEEEEeec-----CCeE
Q psy8748 1693 NKVNSVHYSGDSRHCVSGS--LDGKLIIWDTWTGNKTQVIP-------LRSAWVMSVAFAQSGNFVACGGM-----DNMC 1758 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS--~DGtIrVWDl~Tgk~l~ti~-------~Ht~~ItsLafSPdg~~LaSGS~-----DGtI 1758 (2004)
..+..++++++|+.+++.. .++.++||.+.+++. ..+. .+-..+.+++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6889999999999988864 234355665545543 3332 24467999999999887666543 5789
Q ss_pred EEEEcCCCCCCCcceEEEEEec------CccceeeeEEeC-CCcEEEe-e---cCCeEEEEECCCCceeEEeeccccCCe
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLG------YEGFLSSCRFID-DTTLLTG-S---GDMKIVTWNLETGQRIHEVAQAHIGDV 1827 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~g------h~~~Vssvafsd-d~~LlSg-S---~DGtI~IWDl~tg~~i~~il~~h~~~I 1827 (2004)
.+||+.+++ ....+.. +......+++.. ++.++++ . .++.|.+||..+++.. ....+|....
T Consensus 96 ~~~d~~tg~------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~-r~~~~~~~~~ 168 (343)
T 2qe8_A 96 VAWDTLNNQ------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA-RVLQGYPGIA 168 (343)
T ss_dssp EEEETTTTE------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE-EECTTCTTTS
T ss_pred EEEECCCCe------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE-EEecCCCccc
Confidence 999987542 2222221 223456777774 4554444 3 5789999999988754 3333322110
Q ss_pred E-EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC-eEEEEEcc---CCc---
Q psy8748 1828 V-SISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK-TARLFDIR---ADQ--- 1899 (2004)
Q Consensus 1828 t-sLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG-tIrIWDLr---tgk--- 1899 (2004)
. ...+..+|..+.+.+.+|.+..|. ..+..++|+|+|+.++++..++ .+..++.. .+.
T Consensus 169 ~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~ 234 (343)
T 2qe8_A 169 PEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTD 234 (343)
T ss_dssp CCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCH
T ss_pred ccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCCh
Confidence 0 123344676777777777776553 2367899999999888887766 55555532 110
Q ss_pred -----eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc-CCCCeEEEEEcCCCCEEEEEECC
Q psy8748 1900 -----QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG-HENRVTSISLSPNGMALVTSSWD 1973 (2004)
Q Consensus 1900 -----~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g-Hs~~VtsLaFSPDg~~LaSgS~D 1973 (2004)
.+... .+......++++++|+++++...++.|.+||..+++....... +...+.+++|.+++.++++.+..
T Consensus 235 ~~~~~~~~~~---g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 235 AELGSKIERY---SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp HHHHTTCEEE---EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred hhhhcceEec---ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 00111 1112345689999999999988899999999856764433332 24568999999999988888766
Q ss_pred CeEEEEE
Q psy8748 1974 QFVKVWQ 1980 (2004)
Q Consensus 1974 GtIrIWd 1980 (2004)
+.+.+|.
T Consensus 312 ~~~~~f~ 318 (343)
T 2qe8_A 312 HHSAPLN 318 (343)
T ss_dssp GGSGGGB
T ss_pred ccccccc
Confidence 6554443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=8.8e-08 Score=125.99 Aligned_cols=240 Identities=14% Similarity=0.134 Sum_probs=157.4
Q ss_pred CCCceEEEEEecCCCEEEEe-----ecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCC----
Q psy8748 1733 RSAWVMSVAFAQSGNFVACG-----GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM---- 1803 (2004)
Q Consensus 1733 Ht~~ItsLafSPdg~~LaSG-----S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DG---- 1803 (2004)
+...+..++|+|||++++.+ +....|++||+.+++. ....+.+ .....+.|+++..|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~-----~~~~~~~--~k~~~~~WsDg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP-----LETPLKD--VKFSGISWLGNEGFFYSSYDKPDGS 199 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE-----EEEEEEE--EESCCCEEETTTEEEEEESSCCC--
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC-----CccccCC--ceeccEEEeCCCEEEEEEecCcccc
Confidence 45578899999999988853 3335799999987641 1111111 113566788555677776663
Q ss_pred ---------eEEEEECCCCceeE-Eee--cc-ccCCeEEEEECCCCCEEEEEEC----CCeEEEEECCCCe-EEEEEecC
Q psy8748 1804 ---------KIVTWNLETGQRIH-EVA--QA-HIGDVVSISLSPDGQYFVTGSV----DKSCKLWDFREKK-CVQTFFGH 1865 (2004)
Q Consensus 1804 ---------tI~IWDl~tg~~i~-~il--~~-h~~~ItsLafSPdg~~LaSGS~----DGsIrIWDlrs~k-~I~tl~~h 1865 (2004)
.|++|++.++.... .+. .. +...+.++.|+|||++++.... ++.|+++|+.++. ....+..+
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 49999998775321 122 22 3445788999999998866543 2489999997763 34455556
Q ss_pred CCCeEEEEEeCCCCEEEEEEC-C---CeEEEEEccCCce--eEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CC--eEEE
Q psy8748 1866 EADVNSVCFHPSGLAFATGSE-D---KTARLFDIRADQQ--IATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DN--NVHV 1936 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSgS~-D---GtIrIWDLrtgk~--i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DG--sIrI 1936 (2004)
....... |+++|..|+..+. + +.|..+|+.++.. ...+.... ..+. .|++++++|+.... +| .|++
T Consensus 280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER--QQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC--SSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC--CCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 5555555 6666666555443 3 6799999987654 23343322 2333 88999998877665 44 6899
Q ss_pred EECCCCeeeEEEc-cCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCe
Q psy8748 1937 WDLLKTTHNGVLS-GHENRVTSISLSPNGMALVTSSWD----QFVKVWQESNTI 1985 (2004)
Q Consensus 1937 WDL~tge~l~tL~-gHs~~VtsLaFSPDg~~LaSgS~D----GtIrIWdlstg~ 1985 (2004)
||+..+. ...+. .+.+.+..+.+++++..++....+ +.|+.||+.+++
T Consensus 355 ~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 355 FDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp ECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 9987544 44443 345667888888888876665544 889999998775
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=8.8e-08 Score=126.02 Aligned_cols=276 Identities=14% Similarity=0.102 Sum_probs=180.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCC-C----CceEEEEEecCCCEEEEeec------CCeEEEEEcCCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLR-S----AWVMSVAFAQSGNFVACGGM------DNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~H-t----~~ItsLafSPdg~~LaSGS~------DGtIrVWDl~t~~~~~~~ 1772 (2004)
+..++.++.|+.|..+|..+|+.+..+..+ . ..+.+--.. .+..+++++. +|.|+.||..+++.....
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 567888889999999999999999988765 2 112111111 2445555543 799999999876532211
Q ss_pred eEEEEEe--------------------------cCccceeeeEEe-CCCcEEEeecCC-------------------eEE
Q psy8748 1773 KVIRELL--------------------------GYEGFLSSCRFI-DDTTLLTGSGDM-------------------KIV 1806 (2004)
Q Consensus 1773 k~i~sl~--------------------------gh~~~Vssvafs-dd~~LlSgS~DG-------------------tI~ 1806 (2004)
....... +.......+.+. .++.+++++.++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 1100000 000011234444 345677766654 599
Q ss_pred EEECCCCceeEEeecccc--------CCeEEEEECCCC---CEEEEEECCCeEEEEECCCCeEEEEEecCC---------
Q psy8748 1807 TWNLETGQRIHEVAQAHI--------GDVVSISLSPDG---QYFVTGSVDKSCKLWDFREKKCVQTFFGHE--------- 1866 (2004)
Q Consensus 1807 IWDl~tg~~i~~il~~h~--------~~ItsLafSPdg---~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~--------- 1866 (2004)
.+|..+|+....+...+. ....-+....+| +.+++++.+|.++++|..+++.+..+....
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~ 366 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK 366 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence 999999998876543321 122223333467 688999999999999999999887664221
Q ss_pred --CCe------------------------EEEEEeCCCCEEEEEECC---------------------------------
Q psy8748 1867 --ADV------------------------NSVCFHPSGLAFATGSED--------------------------------- 1887 (2004)
Q Consensus 1867 --s~I------------------------tsIafSPdg~~LaSgS~D--------------------------------- 1887 (2004)
.++ ..++++|++.++++...+
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 446 (677)
T 1kb0_A 367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF 446 (677)
T ss_dssp TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence 011 156889988888776432
Q ss_pred ----------CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCC-CCeE
Q psy8748 1888 ----------KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHE-NRVT 1956 (2004)
Q Consensus 1888 ----------GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs-~~Vt 1956 (2004)
|.|..||+.+++....+... ..+....+...+..+++|+.||.+++||.++++.+..+.... ..-.
T Consensus 447 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 523 (677)
T 1kb0_A 447 NAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAA 523 (677)
T ss_dssp CSSCCCSCCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccccCCCCCccEEEEEeCCCCcEEeecCCC---CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccC
Confidence 78999999999998887432 223334566778899999999999999999999999886433 2234
Q ss_pred EEEEcCCCCEEEEE-EC----------------CCeEEEEECCC
Q psy8748 1957 SISLSPNGMALVTS-SW----------------DQFVKVWQESN 1983 (2004)
Q Consensus 1957 sLaFSPDg~~LaSg-S~----------------DGtIrIWdlst 1983 (2004)
-+.|..+|+.+++. +. .+.+.+|.+..
T Consensus 524 p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 524 PSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 45666788654433 22 36788888773
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-07 Score=112.23 Aligned_cols=225 Identities=15% Similarity=0.147 Sum_probs=143.9
Q ss_pred ccccceeEEEEeCCCCEEEEEeC-----CCeEEEEECCCCceEEEeeCC------CCceEEEEEecCCCE-EEEee---c
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSL-----DGKLIIWDTWTGNKTQVIPLR------SAWVMSVAFAQSGNF-VACGG---M 1754 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~-----DGtIrVWDl~Tgk~l~ti~~H------t~~ItsLafSPdg~~-LaSGS---~ 1754 (2004)
+|...+.+++++++|+++++-.. ++.|.+||+.+++.+..+... ...+..+++++++.. +++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 36678999999999886665433 578999999999877776532 235689999986544 45544 6
Q ss_pred CCeEEEEEcCCCCCCCcceEEEEEecCcccee-eeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEE
Q psy8748 1755 DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS-SCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1755 DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vs-svafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf 1832 (2004)
++.|.+||..++. ..+...+|..... ...+. ++..+.+...+|.+..|. ..+..++|
T Consensus 144 ~~~i~v~d~~~g~------~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~ 202 (343)
T 2qe8_A 144 KAALIRVDLQTGL------AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVL 202 (343)
T ss_dssp GCEEEEEETTTCC------EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC---------------CCEEEEEE
T ss_pred CCeEEEEECCCCC------EEEEecCCCcccccccceeECCEEEEeccCCCceecee---------------cccceeEe
Confidence 7899999987542 2233322211110 01111 222344455566554442 23578999
Q ss_pred CCCCCEEEEEECCC-eEEEEECC---CCe--------EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce
Q psy8748 1833 SPDGQYFVTGSVDK-SCKLWDFR---EKK--------CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ 1900 (2004)
Q Consensus 1833 SPdg~~LaSGS~DG-sIrIWDlr---s~k--------~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~ 1900 (2004)
+|+|+.++++..++ .+..++.. .+. .+. ..++......++++++|+++++...++.|.+||..+++.
T Consensus 203 s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 203 DAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp CTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred ccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE
Confidence 99999999888766 55555532 110 011 113344567899999999998888899999999855654
Q ss_pred eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVW 1937 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIW 1937 (2004)
..... .........+++.++|+++++.+..+.+.+|
T Consensus 282 ~~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 282 KLLVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EEEEE-CGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred EEEEE-CCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 33332 2223457899999999888887655544433
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.7e-08 Score=115.12 Aligned_cols=262 Identities=13% Similarity=0.098 Sum_probs=173.1
Q ss_pred eEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEE
Q psy8748 1696 NSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI 1775 (2004)
Q Consensus 1696 tsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i 1775 (2004)
.+..+..++. +..++.++.|..|| .+++.......+...+.++...+++. +.+++.+ +..||. +++.......
T Consensus 23 ~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~- 95 (330)
T 3hxj_A 23 SSPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDT- 95 (330)
T ss_dssp CCCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-
T ss_pred cCceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEEC-
Confidence 3445555554 66677788999999 88888776655555566777766665 4445444 777775 3322111111
Q ss_pred EEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCC
Q psy8748 1776 RELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855 (2004)
Q Consensus 1776 ~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs 1855 (2004)
........... ++.+++++.++.|..+|.. ++...... .....+.++...+++. +++++.++.|..||..
T Consensus 96 -----~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~- 165 (330)
T 3hxj_A 96 -----KKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD- 165 (330)
T ss_dssp ----------CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-
T ss_pred -----CCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-
Confidence 11111222222 6778889999999999998 76654432 2334456667776776 6667888999999998
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q psy8748 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVH 1935 (2004)
Q Consensus 1856 ~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIr 1935 (2004)
++....+......+.++...+++..+ .++ +.+..|| .+++....+... ...+.++..+++|. +.+++.++.|.
T Consensus 166 g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~--~~~~~~~~~~~~g~-l~v~t~~~gl~ 238 (330)
T 3hxj_A 166 GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAG--YWTVTRPAISEDGT-IYVTSLDGHLY 238 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCS--SCCCSCCEECTTSC-EEEEETTTEEE
T ss_pred CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccC--CcceeceEECCCCe-EEEEcCCCeEE
Confidence 87777776666667778887787644 444 7899999 777777666432 24567778888875 55566788888
Q ss_pred EEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1936 VWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1936 IWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
.+| .+++....+......+..+.+.+++. |..++.+|.|..+|.++
T Consensus 239 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~g 284 (330)
T 3hxj_A 239 AIN-PDGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINPDG 284 (330)
T ss_dssp EEC-TTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECTTS
T ss_pred EEC-CCCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECCCC
Confidence 887 46666666655544455566665664 67778888899999743
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.7e-08 Score=112.39 Aligned_cols=268 Identities=12% Similarity=0.066 Sum_probs=176.2
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
+...+.++...++|. +..++.+ |..+|. +++....+...........+. +..+.+++.++.+..+|.. +.
T Consensus 58 ~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~--- 127 (330)
T 3hxj_A 58 GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GT--- 127 (330)
T ss_dssp GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SC---
T ss_pred CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CC---
Confidence 334567777777765 4445444 888885 666554443333323333333 5667778888989999876 32
Q ss_pred cceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrI 1850 (2004)
...........+.++....++.+++++.++.|..||.. ++...... .....+.++.+.+++.. ++++ +.|..
T Consensus 128 ---~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g~l-~v~t--~~l~~ 199 (330)
T 3hxj_A 128 ---EKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK-TNDAITSAASIGKDGTI-YFGS--DKVYA 199 (330)
T ss_dssp ---EEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTCCE-EEES--SSEEE
T ss_pred ---EEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe-cCCCceeeeEEcCCCEE-EEEe--CEEEE
Confidence 22222333444555566667788899999999999998 76654442 23445667778777774 4444 78999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1851 WDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1851 WDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
|| .+++...........+.++...++|. +++++.++.+..+|. +++....+.... ..+..+.+.++| .|.+|+.
T Consensus 200 ~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~--~~~~~~~~~~~g-~l~v~t~ 273 (330)
T 3hxj_A 200 IN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGK--RIESSPVIGNTD-TIYFGSY 273 (330)
T ss_dssp EC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSS--CCCSCCEECTTS-CEEEECT
T ss_pred EC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCC--CccccceEcCCC-eEEEecC
Confidence 99 77777777666666788888888875 556777888999984 566666554322 223344555555 5667788
Q ss_pred CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1931 DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1931 DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
+|.|..+|. +++....+......+.++...++|. |..++.+|.+++...+..
T Consensus 274 ~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 274 DGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp TCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred CCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 889999995 7777777765566777888877876 566888999998877654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-06 Score=113.95 Aligned_cols=282 Identities=11% Similarity=0.069 Sum_probs=186.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCc----------e-EEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAW----------V-MSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~----------I-tsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
+..++.++.++.|..+|..+|+.+..+...... + ..+.+ .+..+++++.||.|..+|..+++.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 456777788899999999999999888643221 0 11222 3567888889999999999876432211
Q ss_pred eEEEEEecC--ccceeeeEEeCCCcEEEeec------CCeEEEEECCCCceeEEeeccc---------------------
Q psy8748 1773 KVIRELLGY--EGFLSSCRFIDDTTLLTGSG------DMKIVTWNLETGQRIHEVAQAH--------------------- 1823 (2004)
Q Consensus 1773 k~i~sl~gh--~~~Vssvafsdd~~LlSgS~------DGtI~IWDl~tg~~i~~il~~h--------------------- 1823 (2004)
..... ...+.......++.++++.. +|.|+.+|..+|+.+.+.....
T Consensus 144 ----~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 144 ----QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp ----ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred ----ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 11100 11111111123456666654 5899999999999887653210
Q ss_pred ---------cCCeEEEEECCCCCEEEEEECCC-------------------eEEEEECCCCeEEEEEecC--C-------
Q psy8748 1824 ---------IGDVVSISLSPDGQYFVTGSVDK-------------------SCKLWDFREKKCVQTFFGH--E------- 1866 (2004)
Q Consensus 1824 ---------~~~ItsLafSPdg~~LaSGS~DG-------------------sIrIWDlrs~k~I~tl~~h--~------- 1866 (2004)
......+++++++..+++++.++ .|..+|.++++.+..+... .
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 00112468888888999888776 3999999999988877642 2
Q ss_pred CCeEEEEEeCCCC---EEEEEECCCeEEEEEccCCceeEEEcCCCC----------CC----------------------
Q psy8748 1867 ADVNSVCFHPSGL---AFATGSEDKTARLFDIRADQQIATYLPPNK----------NS---------------------- 1911 (2004)
Q Consensus 1867 s~ItsIafSPdg~---~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~----------~s---------------------- 1911 (2004)
.+.....+..+|+ .++.++.+|.++++|..+|+.+........ ..
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G 379 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG 379 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcc
Confidence 2233333334665 688899999999999999998744322110 00
Q ss_pred --CeEEEEEcCCCCEEEEEe------------------------------------CCCeEEEEECCCCeeeEEEccCCC
Q psy8748 1912 --GFTSCAVSSSGRYIFCGS------------------------------------DDNNVHVWDLLKTTHNGVLSGHEN 1953 (2004)
Q Consensus 1912 --~ItsLafSPdG~~LaSGS------------------------------------sDGsIrIWDL~tge~l~tL~gHs~ 1953 (2004)
.-..++++|+...+++.. .+|.|..||+.+++.+.....+.
T Consensus 380 ~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~- 458 (668)
T 1kv9_A 380 AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT- 458 (668)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-
T ss_pred ccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-
Confidence 011267888777666521 23889999999999988776432
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1954 RVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1954 ~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
++....+...+.+++.++.||.++.||..+++.+..++.
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 333334455778899999999999999999977665554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.8e-07 Score=117.84 Aligned_cols=263 Identities=17% Similarity=0.143 Sum_probs=167.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCC--CCceEEEEEec--CCCEEEEee------cCCeEEEEEcCCCCCCCcce
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLR--SAWVMSVAFAQ--SGNFVACGG------MDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~H--t~~ItsLafSP--dg~~LaSGS------~DGtIrVWDl~t~~~~~~~k 1773 (2004)
+..++.++.||.|..+|..+|+.+..+... ......+..+| .+..+++++ .+|.|..||..+++......
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 457888889999999999999999887653 11111111111 133444443 37899999998775322111
Q ss_pred EEEEEe-------------------------cCccceeeeEEeC-CCcEEEeecCCe-------------------EEEE
Q psy8748 1774 VIRELL-------------------------GYEGFLSSCRFID-DTTLLTGSGDMK-------------------IVTW 1808 (2004)
Q Consensus 1774 ~i~sl~-------------------------gh~~~Vssvafsd-d~~LlSgS~DGt-------------------I~IW 1808 (2004)
...... +.......+.+.+ .+.+++++.++. |..|
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 000000 0001112344543 566777777764 9999
Q ss_pred ECCCCceeEEeecc-cc-------CCeEEEEECCCCC---EEEEEECCCeEEEEECCCCeEEEEEecCCC----------
Q psy8748 1809 NLETGQRIHEVAQA-HI-------GDVVSISLSPDGQ---YFVTGSVDKSCKLWDFREKKCVQTFFGHEA---------- 1867 (2004)
Q Consensus 1809 Dl~tg~~i~~il~~-h~-------~~ItsLafSPdg~---~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s---------- 1867 (2004)
|.++|+.+...... |. ..+.......+|+ .++.++.+|.++++|.++++.+........
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 99999988766432 21 1222222223554 788999999999999999998744321110
Q ss_pred -----------------------------CeEEEEEeCCCCEEEEEEC--------------------------------
Q psy8748 1868 -----------------------------DVNSVCFHPSGLAFATGSE-------------------------------- 1886 (2004)
Q Consensus 1868 -----------------------------~ItsIafSPdg~~LaSgS~-------------------------------- 1886 (2004)
.-..++++|+...+++...
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 0113688888878777532
Q ss_pred -------------CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCC
Q psy8748 1887 -------------DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHEN 1953 (2004)
Q Consensus 1887 -------------DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~ 1953 (2004)
+|.|..||+.+++....+.... ......+...+..+++|+.||.++.||.++|+.+..++...+
T Consensus 441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~ 517 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASG 517 (689)
T ss_dssp SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccccCCCCCCCcceeEEEEECCCCCeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCC
Confidence 3789999999999988874332 222235566788999999999999999999999988875433
Q ss_pred C-eEEEEEcCCCCEEEE
Q psy8748 1954 R-VTSISLSPNGMALVT 1969 (2004)
Q Consensus 1954 ~-VtsLaFSPDg~~LaS 1969 (2004)
. -.-+.|..+|+..++
T Consensus 518 ~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 518 VMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cccCceEEEECCEEEEE
Confidence 2 244667778875433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.5e-07 Score=113.29 Aligned_cols=256 Identities=11% Similarity=-0.057 Sum_probs=169.1
Q ss_pred eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee----------cCCeEEEEEcCCCCCCCcceEEEEEecC---
Q psy8748 1715 KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG----------MDNMCTVYDLNNRDSTGAAKVIRELLGY--- 1781 (2004)
Q Consensus 1715 tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS----------~DGtIrVWDl~t~~~~~~~k~i~sl~gh--- 1781 (2004)
+|.++|..+++.+.++.....+ .+.++||+++++++. .++.|.+||..+.+ ....+.-.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~------vv~~I~v~~~~ 118 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL------PIADIELPDAP 118 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC------EEEEEEETTSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC------EEEEEECCCcc
Confidence 8899999999999999876666 799999999888886 46889999998653 34443321
Q ss_pred ----ccceeeeEEeCCC-cEEEeec--CCeEEE--EECCCCceeEEeeccccCCeEEEEECCCC-CEEEEEECCCeEEEE
Q psy8748 1782 ----EGFLSSCRFIDDT-TLLTGSG--DMKIVT--WNLETGQRIHEVAQAHIGDVVSISLSPDG-QYFVTGSVDKSCKLW 1851 (2004)
Q Consensus 1782 ----~~~Vssvafsdd~-~LlSgS~--DGtI~I--WDl~tg~~i~~il~~h~~~ItsLafSPdg-~~LaSGS~DGsIrIW 1851 (2004)
......+.+++++ +++++.. +..|.+ +|..+ +..+..+ +. ..+.|++ ..+++.+.||.+.+.
T Consensus 119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~--~~---~~~~p~g~~~~~~~~~dg~~~~v 190 (368)
T 1mda_H 119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA--SC---FHIHPGAAATHYLGSCPASLAAS 190 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS--SC---CCCEEEETTEEECCCCTTSCEEE
T ss_pred ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC--Cc---eEEccCCCeEEEEEcCCCCEEEE
Confidence 1235567777554 5666653 467888 88877 3233211 11 1123433 345556678888888
Q ss_pred ECCC-----CeEEEE----EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce--eEEEcCCC--------CCCC
Q psy8748 1852 DFRE-----KKCVQT----FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ--IATYLPPN--------KNSG 1912 (2004)
Q Consensus 1852 Dlrs-----~k~I~t----l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~--i~t~~~~~--------~~s~ 1912 (2004)
|+.+ ++.... +.....+. . .+++..++..+. +.+.+.|..+... ...+.... ....
T Consensus 191 d~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 191 DLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp ECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred ECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 8876 332210 11112233 3 666666666666 9999999865432 22221110 0011
Q ss_pred eEEEEEcCCCCEEEEEeC-C--------CeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCC-EEEEEE-CCCeEEEEEC
Q psy8748 1913 FTSCAVSSSGRYIFCGSD-D--------NNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGM-ALVTSS-WDQFVKVWQE 1981 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSs-D--------GsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~-~LaSgS-~DGtIrIWdl 1981 (2004)
...++++++|+.++++.. + +.+.++|+.+.+.+..+.... ...+++|++||+ .+++.. .++.|.++|+
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 122689999998887643 2 356799999999988876433 688999999997 566666 5999999999
Q ss_pred CCCeEEEEEEe
Q psy8748 1982 SNTIVWKVLKV 1992 (2004)
Q Consensus 1982 stg~l~k~Ik~ 1992 (2004)
.+++..+.++.
T Consensus 345 ~t~kvv~~I~v 355 (368)
T 1mda_H 345 ASDQDQSSVEL 355 (368)
T ss_dssp SSCEEEEECCC
T ss_pred CCCcEEEEEEC
Confidence 99876666553
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-07 Score=115.64 Aligned_cols=245 Identities=10% Similarity=-0.019 Sum_probs=163.0
Q ss_pred EEEEeCCCCEEEEEe----------CCCeEEEEECCCCceEEEeeCC-------CCceEEEEEecCCCEEEEeec--CCe
Q psy8748 1697 SVHYSGDSRHCVSGS----------LDGKLIIWDTWTGNKTQVIPLR-------SAWVMSVAFAQSGNFVACGGM--DNM 1757 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS----------~DGtIrVWDl~Tgk~l~ti~~H-------t~~ItsLafSPdg~~LaSGS~--DGt 1757 (2004)
.++++||+++++++. .++.|.+||..+++.+.++... ......+.++|||++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999888876 3688999999999999998654 123568899999999998864 457
Q ss_pred EEE--EEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCC-----CceeEE---eeccccCCe
Q psy8748 1758 CTV--YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLET-----GQRIHE---VAQAHIGDV 1827 (2004)
Q Consensus 1758 IrV--WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~t-----g~~i~~---il~~h~~~I 1827 (2004)
+.+ +|..+ ...+.- .+. ..+.......+++.+.||.+.+.|..+ ++.... ...-...+.
T Consensus 149 v~V~~iD~~t---------v~~i~v-~~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~ 217 (368)
T 1mda_H 149 AGLSVPGASD---------DQLTKS-ASC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA 217 (368)
T ss_dssp EEEEETTTEE---------EEEEEC-SSC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE
T ss_pred EEEEEEchhh---------ceEEEC-CCc-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc
Confidence 888 88753 222211 111 112222334566777888888889886 332210 011112232
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCe--EEEEEecC----------CCCeEEEEEeCCCCEEEEEEC-C-------
Q psy8748 1828 VSISLSPDGQYFVTGSVDKSCKLWDFREKK--CVQTFFGH----------EADVNSVCFHPSGLAFATGSE-D------- 1887 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS~DGsIrIWDlrs~k--~I~tl~~h----------~s~ItsIafSPdg~~LaSgS~-D------- 1887 (2004)
. .+++..++..+. +.+.+.|..... .+..+.-. ......++++|+++.++++.. +
T Consensus 218 ---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~ 292 (368)
T 1mda_H 218 ---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA 292 (368)
T ss_dssp ---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred ---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence 3 556666666666 999999986532 22222110 011222789999998887643 2
Q ss_pred -CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE-EEEEe-CCCeEEEEECCCCeeeEEEccCCCCeEEEEEc
Q psy8748 1888 -KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY-IFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVTSISLS 1961 (2004)
Q Consensus 1888 -GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~-LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFS 1961 (2004)
+.+.++|+.+++.+.++... .....++|++||++ +++.. .++.|.++|+.+++.+..+..... ..++++.
T Consensus 293 ~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~ 365 (368)
T 1mda_H 293 AENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp EEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred CCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence 35779999999888776432 24788999999984 55555 589999999999999999875433 3455554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.9e-05 Score=102.30 Aligned_cols=278 Identities=14% Similarity=0.093 Sum_probs=185.5
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC-------CCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL-------RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~-------Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
..|.++...++|.+.+ |+.+ -|.+||..++........ ....|.++...++|... .|+.++-|..|+...
T Consensus 263 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~ 339 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIR 339 (795)
T ss_dssp SBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGG
T ss_pred CeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCc
Confidence 5689999988887444 4455 588999877765443221 23579999999888755 456666688888654
Q ss_pred CCCCCcceEEEEEe----cCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeec-------cccCCeEEEEECC
Q psy8748 1766 RDSTGAAKVIRELL----GYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ-------AHIGDVVSISLSP 1834 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~----gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~-------~h~~~ItsLafSP 1834 (2004)
.. ........ -....|.++....++.+.+|+.++.|..||..++........ -....|.++...+
T Consensus 340 ~~----~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~ 415 (795)
T 4a2l_A 340 NR----FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE 415 (795)
T ss_dssp GS----SEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET
T ss_pred cc----ceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC
Confidence 31 11111100 123457777777778899999998999999887764422111 1235689999988
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEe----cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC----
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFREKKCVQTFF----GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP---- 1906 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs~k~I~tl~----~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~---- 1906 (2004)
+|+.+.+|+.++.|..||..+++...... .....|.++...++|...+ |+.+ .+.+||..+++.......
T Consensus 416 ~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 416 KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTEEEECCBCTTCC
T ss_pred CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCeEEEcccccccc
Confidence 88868888888889999988776433221 1245789999888887544 4554 588999877654322111
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc-------cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS-------GHENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~-------gHs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
.-....|.++..+++|++.+.. . +-+..||..+++. .+. .....|.++...++|.+.++.. . .|..|
T Consensus 494 ~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~ 567 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCF 567 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEE
T ss_pred ccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeE
Confidence 1123568899999998866654 4 4588899877665 222 1345799999999998655443 4 58889
Q ss_pred ECCCCe
Q psy8748 1980 QESNTI 1985 (2004)
Q Consensus 1980 dlstg~ 1985 (2004)
+..++.
T Consensus 568 d~~~~~ 573 (795)
T 4a2l_A 568 NEKDKQ 573 (795)
T ss_dssp ETTTTE
T ss_pred CCCCCc
Confidence 987764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=8.8e-09 Score=125.46 Aligned_cols=255 Identities=11% Similarity=0.014 Sum_probs=143.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC-
Q psy8748 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY- 1781 (2004)
Q Consensus 1703 DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh- 1781 (2004)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||..+++..... ..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~------~~~~ 79 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL------PFTI 79 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC------SCCH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee------eccC
Confidence 577899999999999999999999988876 45555556667878888889999999999766422111 111
Q ss_pred cccee-eeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEE
Q psy8748 1782 EGFLS-SCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1782 ~~~Vs-svafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~ 1860 (2004)
...+. ......++.+++++.++.|+.||..+|+........ . ...++|++..+++++.||.|+.||.++++.+.
T Consensus 80 ~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 80 PELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp HHHHTTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC-C----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 11111 111124567888899999999999999887554221 1 23456688899999999999999999988665
Q ss_pred EEecCCCCeEEEEEeCCC---CEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeE-EEEEcCCCCEE----EEEeCCC
Q psy8748 1861 TFFGHEADVNSVCFHPSG---LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFT-SCAVSSSGRYI----FCGSDDN 1932 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg---~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~It-sLafSPdG~~L----aSGSsDG 1932 (2004)
.+..+. .....+..+. ..+++++.||.|+.||.++++....+... .++. ...++++|... +.+ ++
T Consensus 155 ~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~pv~~~~~~~~dg~~~v~~~~~~--~~ 227 (369)
T 2hz6_A 155 NATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA---SPVVAFYVWQREGLRKVMHINVA--VE 227 (369)
T ss_dssp EEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS---SCEEEEEECTTSSCEEECCEEEE--HH
T ss_pred eEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC---CceEEEEEecCCceEeccceeec--cc
Confidence 543211 1222233322 46777889999999999999998877532 2333 34455566432 122 34
Q ss_pred eEEEEECCCCe----eeEEEccCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECC
Q psy8748 1933 NVHVWDLLKTT----HNGVLSGHENRVTSISLSP--NGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1933 sIrIWDL~tge----~l~tL~gHs~~VtsLaFSP--Dg~~LaSgS~DGtIrIWdls 1982 (2004)
.++.+|..+|+ ....+.. .+.+. +| .+..++.++.||.++.++..
T Consensus 228 ~l~~ld~~tG~~~~~~~W~~~~-~~~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 228 TLRYLTFMSGEVGRITKWKYPF-PKETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCC-CCHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred ceeeeehhcCCcccceeeeecc-Ccccc----ccccccceEEEecccCCEEecCcc
Confidence 45666665555 3332221 11111 12 34467778888888888765
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-08 Score=124.25 Aligned_cols=203 Identities=11% Similarity=0.036 Sum_probs=112.9
Q ss_pred CCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEeecCCeEEEEECCCCceeEEeeccc
Q psy8748 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAH 1823 (2004)
Q Consensus 1745 dg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h 1823 (2004)
++..+++++.||.|+.||..+++. ...... +.+.+..+. ++..+++++.||.|+.||..+|+.+.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~------~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~ 79 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI------KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI 79 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE------EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE------EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC
Confidence 578899999999999999987642 222222 223333333 44467777899999999999888754432111
Q ss_pred cCCeE-EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeE
Q psy8748 1824 IGDVV-SISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIA 1902 (2004)
Q Consensus 1824 ~~~It-sLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~ 1902 (2004)
...+. +..+. .+..+++|+.||.|+.||.++++.+..+..+. ...++|++..+++++.||.|+.||.++++...
T Consensus 80 ~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 80 PELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp HHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 11110 00111 34567888889999999999999887775543 23456788889999999999999999998876
Q ss_pred EEcCCCCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeE-EEEEcCCCC
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSG---RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVT-SISLSPNGM 1965 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG---~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~Vt-sLaFSPDg~ 1965 (2004)
.+.... ....+++.++ ..+++++.||.|+.||..+|+.+..... ..++. ...++++|.
T Consensus 155 ~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 155 NATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred eEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 653211 1122233332 5677888999999999999998887763 34443 344555664
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4e-05 Score=102.12 Aligned_cols=282 Identities=8% Similarity=0.033 Sum_probs=187.0
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC-------CCCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL-------RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~-------Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
...|.++...++|.+.+ |+.++-+..||..+++....... ....|.++...++|.+.+.. .+| |.+|+..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~G-l~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FND-LNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SSC-EEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CCh-hheEcCC
Confidence 46789999888776544 44444589999877655433221 23569999998888766544 445 8888875
Q ss_pred CCCCCCcceEEEEE-----ecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeec-----cccCCeEEEEECC
Q psy8748 1765 NRDSTGAAKVIREL-----LGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ-----AHIGDVVSISLSP 1834 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl-----~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~-----~h~~~ItsLafSP 1834 (2004)
+.. ....... .-....|.++....++.+.+|+.++.|..|+..++........ -....|.++...+
T Consensus 291 ~~~----~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~ 366 (795)
T 4a2l_A 291 TDS----FASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK 366 (795)
T ss_dssp TTE----EEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred CCe----EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence 431 1111100 0123467778777888899999999999998766543211110 1234699999988
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEec--------CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC
Q psy8748 1835 DGQYFVTGSVDKSCKLWDFREKKCVQTFFG--------HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1835 dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~--------h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
+|+ +.+|+.++.|..||..++........ ....|.+++..++|+.+.+|+.++-+..||..+++.......
T Consensus 367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~ 445 (795)
T 4a2l_A 367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR 445 (795)
T ss_dssp TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence 876 66788888899999887654332211 235789999988888577788878899999887764332211
Q ss_pred --CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc------CCCCeEEEEEcCCCCEEEEEECCCeEEE
Q psy8748 1907 --PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG------HENRVTSISLSPNGMALVTSSWDQFVKV 1978 (2004)
Q Consensus 1907 --~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g------Hs~~VtsLaFSPDg~~LaSgS~DGtIrI 1978 (2004)
......|.++..+++|++.+.. .+ -+.+||..+++....... +...|.++...++|.+.+... +.|..
T Consensus 446 ~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~ 521 (795)
T 4a2l_A 446 NSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSV 521 (795)
T ss_dssp TSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEE
T ss_pred CCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEE
Confidence 1123568899999888865544 44 488999877654432211 236799999999998666544 45888
Q ss_pred EECCCCe
Q psy8748 1979 WQESNTI 1985 (2004)
Q Consensus 1979 Wdlstg~ 1985 (2004)
|+..++.
T Consensus 522 ~~~~~~~ 528 (795)
T 4a2l_A 522 FKQEGLD 528 (795)
T ss_dssp EEEETTE
T ss_pred EeCCCCe
Confidence 9887764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-05 Score=99.67 Aligned_cols=226 Identities=11% Similarity=0.078 Sum_probs=149.8
Q ss_pred cCCCEEEE-eecCCeEEEEEcCCCCCCCcceEEEEEe------c-CccceeeeEEeCCCcEEEeecC------CeEEEEE
Q psy8748 1744 QSGNFVAC-GGMDNMCTVYDLNNRDSTGAAKVIRELL------G-YEGFLSSCRFIDDTTLLTGSGD------MKIVTWN 1809 (2004)
Q Consensus 1744 Pdg~~LaS-GS~DGtIrVWDl~t~~~~~~~k~i~sl~------g-h~~~Vssvafsdd~~LlSgS~D------GtI~IWD 1809 (2004)
.+++++++ +..++.|.++|+.+.. ...+..+.+. . .......+...+++.++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p--~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNP--REPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCT--TSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCC--CCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEE
Confidence 66776655 5667899999986432 1234444442 0 1112334455566665555444 7899999
Q ss_pred CCCCceeEEeecccc--CCeEEEEECCCCCEEEEEE-------------------CCCeEEEEECCCCeEEEEEecC--C
Q psy8748 1810 LETGQRIHEVAQAHI--GDVVSISLSPDGQYFVTGS-------------------VDKSCKLWDFREKKCVQTFFGH--E 1866 (2004)
Q Consensus 1810 l~tg~~i~~il~~h~--~~ItsLafSPdg~~LaSGS-------------------~DGsIrIWDlrs~k~I~tl~~h--~ 1866 (2004)
..+++.+.+...+.. .--..+-|+|+++.+++.. .+..|.+||+.+++.+.++... .
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 999998866643322 2234578899999888874 3679999999998888877642 1
Q ss_pred CCeEEEEE--eCCCCEEEEEEC------CCeEEEEEccCCcee--EEE--cCC---C-----------CCCCeEEEEEcC
Q psy8748 1867 ADVNSVCF--HPSGLAFATGSE------DKTARLFDIRADQQI--ATY--LPP---N-----------KNSGFTSCAVSS 1920 (2004)
Q Consensus 1867 s~ItsIaf--SPdg~~LaSgS~------DGtIrIWDLrtgk~i--~t~--~~~---~-----------~~s~ItsLafSP 1920 (2004)
.....+.| +|+++++++++. +++|.+|....+... ..+ ... . .......+.+++
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 34456656 999999888774 668888776554321 111 100 0 013467899999
Q ss_pred CCCEEEEEeC-CCeEEEEECCC---CeeeEEEccCC--------------CCeEEEEEcCCCCEEEEEE
Q psy8748 1921 SGRYIFCGSD-DNNVHVWDLLK---TTHNGVLSGHE--------------NRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1921 dG~~LaSGSs-DGsIrIWDL~t---ge~l~tL~gHs--------------~~VtsLaFSPDg~~LaSgS 1971 (2004)
||++|+++.. .+.|.+||+.. .+.+..+.... +.-..++++|||++|+++.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999998876 68999999853 34555543221 1358899999999999988
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-05 Score=103.06 Aligned_cols=282 Identities=10% Similarity=0.031 Sum_probs=181.4
Q ss_pred CCEEEEEeC-CCeEEEEEC-CCCceEEEeeCCCCc-----------eEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1704 SRHCVSGSL-DGKLIIWDT-WTGNKTQVIPLRSAW-----------VMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1704 G~~LASGS~-DGtIrVWDl-~Tgk~l~ti~~Ht~~-----------ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
+..++.++. ++.|.-+|. .+|+.+..+...... -..++. .+..+++++.|+.+..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666676 899999999 999999887543210 011233 36678888889999999998764321
Q ss_pred cceEEEEEecCc--cceeeeEEeCCCcEEEeec------CCeEEEEECCCCceeEEeeccccC-----------------
Q psy8748 1771 AAKVIRELLGYE--GFLSSCRFIDDTTLLTGSG------DMKIVTWNLETGQRIHEVAQAHIG----------------- 1825 (2004)
Q Consensus 1771 ~~k~i~sl~gh~--~~Vssvafsdd~~LlSgS~------DGtI~IWDl~tg~~i~~il~~h~~----------------- 1825 (2004)
. .....+. ..+.+.-...++.+++++. +|.|+.+|..+|+.+.+.......
T Consensus 140 ~----~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 140 E----VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp E----EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred E----ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 1 1111110 0122111112456666665 799999999999987665322110
Q ss_pred -------------------C-eEEEEECCCCCEEEEEECC----------------CeEEEEECCCCeEEEEEecCCC--
Q psy8748 1826 -------------------D-VVSISLSPDGQYFVTGSVD----------------KSCKLWDFREKKCVQTFFGHEA-- 1867 (2004)
Q Consensus 1826 -------------------~-ItsLafSPdg~~LaSGS~D----------------GsIrIWDlrs~k~I~tl~~h~s-- 1867 (2004)
. ...++++++...++.++.+ +.|..+|.++++.+..+.....
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~ 295 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE 295 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcc
Confidence 0 0235677777777777642 3699999999998877753211
Q ss_pred -------CeEEEEEeCCCC---EEEEEECCCeEEEEEccCCceeEEEcCCCCC-----------CCe-------------
Q psy8748 1868 -------DVNSVCFHPSGL---AFATGSEDKTARLFDIRADQQIATYLPPNKN-----------SGF------------- 1913 (2004)
Q Consensus 1868 -------~ItsIafSPdg~---~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~-----------s~I------------- 1913 (2004)
...-+....+|+ .++.++.+|.++++|..+++.+..+...... .++
T Consensus 296 ~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~ 375 (571)
T 2ad6_A 296 WDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKG 375 (571)
T ss_dssp SCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCE
T ss_pred cccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCc
Confidence 111122234674 5778889999999999999988776432200 011
Q ss_pred -------------EEEEEcCCCCEEEEEe-------------------------------------CCCeEEEEECCCCe
Q psy8748 1914 -------------TSCAVSSSGRYIFCGS-------------------------------------DDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1914 -------------tsLafSPdG~~LaSGS-------------------------------------sDGsIrIWDL~tge 1943 (2004)
..++++|++..+++.. .+|.|..||..+++
T Consensus 376 ~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~ 455 (571)
T 2ad6_A 376 TNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK 455 (571)
T ss_dssp EEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC
T ss_pred eEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC
Confidence 2357888877777654 34789999999999
Q ss_pred eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1944 HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1944 ~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
.+..+... ..+.+..+...+..++.++.||.|+.||..+++....++.
T Consensus 456 ~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 456 AKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp EEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 88777532 2233333333566788899999999999999976555553
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.4e-05 Score=101.54 Aligned_cols=283 Identities=8% Similarity=0.027 Sum_probs=180.2
Q ss_pred CCEEEEEeC-CCeEEEEEC-CCCceEEEeeCCCCc-----------eEEEEEecCCCE----EEEeecCCeEEEEEcCCC
Q psy8748 1704 SRHCVSGSL-DGKLIIWDT-WTGNKTQVIPLRSAW-----------VMSVAFAQSGNF----VACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1704 G~~LASGS~-DGtIrVWDl-~Tgk~l~ti~~Ht~~-----------ItsLafSPdg~~----LaSGS~DGtIrVWDl~t~ 1766 (2004)
+..++.++. ++.|.-+|. .+|+.+..+...... ...+++.|.+.. +++++.|+.+..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456667777 899999999 999999887643321 123455444444 888888999999999876
Q ss_pred CCCCcceEEEEEecCc--cceeeeEEeCCCcEEEeec------CCeEEEEECCCCceeEEeeccccC-------------
Q psy8748 1767 DSTGAAKVIRELLGYE--GFLSSCRFIDDTTLLTGSG------DMKIVTWNLETGQRIHEVAQAHIG------------- 1825 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~--~~Vssvafsdd~~LlSgS~------DGtI~IWDl~tg~~i~~il~~h~~------------- 1825 (2004)
+.... .....+. ..+.+.-...++.+++++. +|.|+.+|..+|+.+.+.......
T Consensus 142 ~~~W~----~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 142 ETVWK----VENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp CEEEE----EECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CEEEe----ecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 43211 1111110 0122111112456666653 799999999999987665322110
Q ss_pred -----------------------Ce-EEEEECCCCCEEEEEECCC----------------eEEEEECCCCeEEEEEecC
Q psy8748 1826 -----------------------DV-VSISLSPDGQYFVTGSVDK----------------SCKLWDFREKKCVQTFFGH 1865 (2004)
Q Consensus 1826 -----------------------~I-tsLafSPdg~~LaSGS~DG----------------sIrIWDlrs~k~I~tl~~h 1865 (2004)
.+ ..+++.++...++.++.++ .|..+|.++++.+..+...
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 00 1356667778888887653 8999999999988777643
Q ss_pred CCC---------eEEEEEe-CCC---CEEEEEECCCeEEEEEccCCceeEEEcCCC-----------CCCC---------
Q psy8748 1866 EAD---------VNSVCFH-PSG---LAFATGSEDKTARLFDIRADQQIATYLPPN-----------KNSG--------- 1912 (2004)
Q Consensus 1866 ~s~---------ItsIafS-Pdg---~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~-----------~~s~--------- 1912 (2004)
... ..-+... .+| ..++.++.+|.++++|..+|+.+....... ...+
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~ 377 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTR 377 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCC
T ss_pred CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCC
Confidence 221 1112222 467 467778899999999999999887664321 0000
Q ss_pred -----------------eEEEEEcCCCCEEEEEe---------------------------------------CCCeEEE
Q psy8748 1913 -----------------FTSCAVSSSGRYIFCGS---------------------------------------DDNNVHV 1936 (2004)
Q Consensus 1913 -----------------ItsLafSPdG~~LaSGS---------------------------------------sDGsIrI 1936 (2004)
-..++++|+..++++.. .+|.|..
T Consensus 378 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A 457 (599)
T 1w6s_A 378 MDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKA 457 (599)
T ss_dssp TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEE
T ss_pred CCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEE
Confidence 12356777766665531 3478999
Q ss_pred EECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1937 WDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1937 WDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
||+.+++.+...... .++..-.....+.+++.++.||.++.||.++|+.+-..+
T Consensus 458 ~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 458 YNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp ECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 999999888776421 122111122356678889999999999999997544444
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-06 Score=109.27 Aligned_cols=250 Identities=13% Similarity=0.107 Sum_probs=151.7
Q ss_pred CCCCEEEEEeC-CCeEEEEECCCCceEEEeeCC-CCceEEEEE-e-cCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEE
Q psy8748 1702 GDSRHCVSGSL-DGKLIIWDTWTGNKTQVIPLR-SAWVMSVAF-A-QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRE 1777 (2004)
Q Consensus 1702 PDG~~LASGS~-DGtIrVWDl~Tgk~l~ti~~H-t~~ItsLaf-S-Pdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~s 1777 (2004)
+||++++.... ++.|.+.|+.+.+....+... ...+..+++ . |+++++++++.... -+ .+.+. .
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~-p~--~~dg~------~--- 166 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDET-PL--VNDGT------N--- 166 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCE-ES--SCSSS------S---
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEeccccc-cc--CCCCc------c---
Confidence 48888777655 567999999999988855432 245888888 5 89999988863210 00 00000 0
Q ss_pred EecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC------------
Q psy8748 1778 LLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD------------ 1845 (2004)
Q Consensus 1778 l~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D------------ 1845 (2004)
+ ....-.++.+.++|..+.+...++..+. ....++++|+|+++++.+.+
T Consensus 167 -------l----------~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~ 227 (595)
T 1fwx_A 167 -------M----------EDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA 227 (595)
T ss_dssp -------T----------TCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC
T ss_pred -------c----------ccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccc
Confidence 0 0000112334444444444443332211 22334444455444444422
Q ss_pred --------------------------CeEEEEECCC--CeE-EEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEc
Q psy8748 1846 --------------------------KSCKLWDFRE--KKC-VQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDI 1895 (2004)
Q Consensus 1846 --------------------------GsIrIWDlrs--~k~-I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDL 1895 (2004)
+.|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+
T Consensus 228 ~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~ 306 (595)
T 1fwx_A 228 AEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV 306 (595)
T ss_dssp CSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred cccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEEC
Confidence 3478888877 444 444432 33567899999999877766 5788999999
Q ss_pred cCCce-----------eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CeeeEEEccCCCC
Q psy8748 1896 RADQQ-----------IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK----------TTHNGVLSGHENR 1954 (2004)
Q Consensus 1896 rtgk~-----------i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t----------ge~l~tL~gHs~~ 1954 (2004)
.+.+. +... .........++|+++|...++..-|++|.+||+.+ .+.+.++..|-.+
T Consensus 307 ~~~~~~~~~~l~~~~~v~~~--v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 307 TRFDAVFYENADPRSAVVAE--PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp GGHHHHHHSCCCGGGGEEEC--CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred cccccccccccCcccceEEE--cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence 86531 1111 22335678999999994444555699999999976 5667777666543
Q ss_pred e-----EEEEEcCCCCEEEEEEC---CCe----------EEEEECCCCe
Q psy8748 1955 V-----TSISLSPNGMALVTSSW---DQF----------VKVWQESNTI 1985 (2004)
Q Consensus 1955 V-----tsLaFSPDg~~LaSgS~---DGt----------IrIWdlstg~ 1985 (2004)
- .++.++|||++|+++.. |+. -.++|+++++
T Consensus 385 Gh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 385 GHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 2 12245799999999854 443 2889997765
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=7.8e-05 Score=85.56 Aligned_cols=248 Identities=10% Similarity=0.028 Sum_probs=153.2
Q ss_pred CEEEEEeCCCeEEEEECCCCce-----EEEeeCCCCceEEEEEecCCCEEE-EeecCCeEEEEEcCCCCCCCcceEEEEE
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNK-----TQVIPLRSAWVMSVAFAQSGNFVA-CGGMDNMCTVYDLNNRDSTGAAKVIREL 1778 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~-----l~ti~~Ht~~ItsLafSPdg~~La-SGS~DGtIrVWDl~t~~~~~~~k~i~sl 1778 (2004)
++|+.+.. +.|+.+++..... ...+......+.+++|+++++.++ +-..++.|..++.+... . ....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~----~--~~~~ 74 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE----P--TTII 74 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----C--EEEE
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC----c--EEEE
Confidence 44555543 4788888765432 112222234578999999765554 44557899999986532 1 1112
Q ss_pred ecCccceeeeEEeC-CCcEEE-eecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC---CCeEEEEEC
Q psy8748 1779 LGYEGFLSSCRFID-DTTLLT-GSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV---DKSCKLWDF 1853 (2004)
Q Consensus 1779 ~gh~~~Vssvafsd-d~~LlS-gS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~---DGsIrIWDl 1853 (2004)
.........+++.+ ++.++. ....+.|.+++.+..... .+..........++++|++..++.+.. .+.|..++.
T Consensus 75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~ 153 (267)
T 1npe_A 75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM 153 (267)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence 22224567777775 455554 445689999998754332 222222346789999997777666654 368888887
Q ss_pred CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CC
Q psy8748 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS-DD 1931 (2004)
Q Consensus 1854 rs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sD 1931 (2004)
............-.....+++++++..++.+. ..+.|.++|........... . ......++.. +..++++. .+
T Consensus 154 dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--~-~~~P~gi~~d--~~~lyva~~~~ 228 (267)
T 1npe_A 154 DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE--G-LQYPFAVTSY--GKNLYYTDWKT 228 (267)
T ss_dssp TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE--C-CCSEEEEEEE--TTEEEEEETTT
T ss_pred CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec--C-CCCceEEEEe--CCEEEEEECCC
Confidence 64332212222334678999999877665554 46789999987544333322 1 1233556654 45555555 56
Q ss_pred CeEEEEECCCCeeeEEEccCC-CCeEEEEEcCCCC
Q psy8748 1932 NNVHVWDLLKTTHNGVLSGHE-NRVTSISLSPNGM 1965 (2004)
Q Consensus 1932 GsIrIWDL~tge~l~tL~gHs-~~VtsLaFSPDg~ 1965 (2004)
+.|..+|..+++.+..+.... ....++++.|++.
T Consensus 229 ~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 899999999999888886433 3477888888765
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=5.7e-05 Score=97.79 Aligned_cols=281 Identities=13% Similarity=0.076 Sum_probs=174.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCce---------EEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceE
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWV---------MSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~I---------tsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
+..++.++.++.|.-+|..+|+.+..+....... ..++. .+..+++++.++.+..+|..+++.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~-- 143 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKK-- 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEE--
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeee--
Confidence 3445555554459999999999998876543210 12222 3567888888999999999876532211
Q ss_pred EEEEecCc--ccee-eeEEeCC----C-cEEEeec------CCeEEEEECCCCceeEEeecccc----------------
Q psy8748 1775 IRELLGYE--GFLS-SCRFIDD----T-TLLTGSG------DMKIVTWNLETGQRIHEVAQAHI---------------- 1824 (2004)
Q Consensus 1775 i~sl~gh~--~~Vs-svafsdd----~-~LlSgS~------DGtI~IWDl~tg~~i~~il~~h~---------------- 1824 (2004)
....+. ..+. .....++ . .+++++. +|.|+.+|..+|+.+........
T Consensus 144 --~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~ 221 (582)
T 1flg_A 144 --KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDV 221 (582)
T ss_dssp --ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCT
T ss_pred --cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccc
Confidence 111110 0111 1111122 1 5666553 78999999999987765422100
Q ss_pred ------------------------CCeEEEEECCCCCEEEEEEC--------------------C----CeEEEEECCCC
Q psy8748 1825 ------------------------GDVVSISLSPDGQYFVTGSV--------------------D----KSCKLWDFREK 1856 (2004)
Q Consensus 1825 ------------------------~~ItsLafSPdg~~LaSGS~--------------------D----GsIrIWDlrs~ 1856 (2004)
..-..++++|+...+++++. | +.|..+|.+++
T Consensus 222 g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG 301 (582)
T 1flg_A 222 KAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG 301 (582)
T ss_dssp TCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC
T ss_pred ccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCC
Confidence 00013566777788887763 2 58999999999
Q ss_pred eEEEEEec--CC--------CCeEEEEEe-CCCC---EEEEEECCCeEEEEEccCCceeEEEcCCCCC-----------C
Q psy8748 1857 KCVQTFFG--HE--------ADVNSVCFH-PSGL---AFATGSEDKTARLFDIRADQQIATYLPPNKN-----------S 1911 (2004)
Q Consensus 1857 k~I~tl~~--h~--------s~ItsIafS-Pdg~---~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~-----------s 1911 (2004)
+.+..+.. |. .++. +... .+|+ .++.++.+|.++++|..+|+.+..+...... .
T Consensus 302 ~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~ 380 (582)
T 1flg_A 302 EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGR 380 (582)
T ss_dssp CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCC
T ss_pred CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCC
Confidence 98887753 21 1111 2222 4664 6888999999999999999988766432200 0
Q ss_pred --------------------C------------eEEEEEcCCCCEEEEEe------------------------------
Q psy8748 1912 --------------------G------------FTSCAVSSSGRYIFCGS------------------------------ 1929 (2004)
Q Consensus 1912 --------------------~------------ItsLafSPdG~~LaSGS------------------------------ 1929 (2004)
. ...++++|+...+++..
T Consensus 381 p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~ 460 (582)
T 1flg_A 381 PVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM 460 (582)
T ss_dssp EEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEES
T ss_pred EeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCC
Confidence 0 01346677655555432
Q ss_pred ---CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1930 ---DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1930 ---sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
.+|.|..||+.+++.+.....+. ++..-.....+.+++.++.||.++.||.++|+.+-..+.
T Consensus 461 ~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 461 YDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 25889999999999887765332 222212222466788899999999999999976555544
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=2e-05 Score=103.57 Aligned_cols=263 Identities=15% Similarity=0.142 Sum_probs=162.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCC----CceEE-EEEecCCCEEEEeec------CCeEEEEEcCCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS----AWVMS-VAFAQSGNFVACGGM------DNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht----~~Its-LafSPdg~~LaSGS~------DGtIrVWDl~t~~~~~~~ 1772 (2004)
+..++.++.||.|..+|..+|+.+..+.... ..+.+ ... .+..++++.. +|.|..+|..+++.....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4568888889999999999999998876531 11111 111 1345555543 589999999876532221
Q ss_pred eEEEEEe-------------------------cCccceeeeEEeC-CCcEEEeecCC-------------------eEEE
Q psy8748 1773 KVIRELL-------------------------GYEGFLSSCRFID-DTTLLTGSGDM-------------------KIVT 1807 (2004)
Q Consensus 1773 k~i~sl~-------------------------gh~~~Vssvafsd-d~~LlSgS~DG-------------------tI~I 1807 (2004)
....... +.........+.+ .+.++.++.++ .|..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 1100000 0000111234443 45677777666 4999
Q ss_pred EECCCCceeEEeecc-cc-------CCeEEEEECCCCC---EEEEEECCCeEEEEECCCCeEEEEEecCC----------
Q psy8748 1808 WNLETGQRIHEVAQA-HI-------GDVVSISLSPDGQ---YFVTGSVDKSCKLWDFREKKCVQTFFGHE---------- 1866 (2004)
Q Consensus 1808 WDl~tg~~i~~il~~-h~-------~~ItsLafSPdg~---~LaSGS~DGsIrIWDlrs~k~I~tl~~h~---------- 1866 (2004)
+|.++|+.+...... |. .+.....+..+|+ .+++++.+|.++++|..+++.+.......
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 999999988766433 21 2222223333565 68899999999999999999875432211
Q ss_pred --CCe------------------------EEEEEeCCCCEEEEEE-----------------------------------
Q psy8748 1867 --ADV------------------------NSVCFHPSGLAFATGS----------------------------------- 1885 (2004)
Q Consensus 1867 --s~I------------------------tsIafSPdg~~LaSgS----------------------------------- 1885 (2004)
.++ ..++++|+...+++..
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 434 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence 000 1267788766665421
Q ss_pred -CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCe-EEEEEcCC
Q psy8748 1886 -EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRV-TSISLSPN 1963 (2004)
Q Consensus 1886 -~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~V-tsLaFSPD 1963 (2004)
.+|.|..||..+++...+..... ......+...+.++++|+.||.++.||.++++.+..+....+.. .-+.+..+
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~ 511 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELA 511 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred CccceEEEEeCCCCcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEEC
Confidence 23789999999999987774322 22223444578899999999999999999999998886543211 22334456
Q ss_pred CC-EEEEEE
Q psy8748 1964 GM-ALVTSS 1971 (2004)
Q Consensus 1964 g~-~LaSgS 1971 (2004)
|+ +++.+.
T Consensus 512 G~~yva~~~ 520 (668)
T 1kv9_A 512 GRQYVAIMA 520 (668)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 66 444443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00017 Score=95.87 Aligned_cols=284 Identities=13% Similarity=0.041 Sum_probs=178.6
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee-------CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP-------LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~-------~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
..|.++...++|.+.+ |+.+ -+.+||..+++...... .....|.++...++|.+.+ |+..+-|.+++..+
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCC
Confidence 5689999888887554 4444 58999987765432211 1245699998887776554 55544588888765
Q ss_pred CCCCCcce----EEEEE----ecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEee--------ccccCCeEE
Q psy8748 1766 RDSTGAAK----VIREL----LGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVA--------QAHIGDVVS 1829 (2004)
Q Consensus 1766 ~~~~~~~k----~i~sl----~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il--------~~h~~~Its 1829 (2004)
........ .+... .-....|.++....++.+.+|+.++.|..|+..++....... .-....|.+
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 367 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSS 367 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEE
Confidence 42110000 00000 112345777777777889999988899999987655332111 012356899
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC
Q psy8748 1830 ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF---FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1830 LafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl---~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
+...++|+ +.+|+.++.|..||..++...... ......|.++...++|. +.+|+.++.+..+|..+++.. .+..
T Consensus 368 i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~ 444 (781)
T 3v9f_A 368 VCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIEL 444 (781)
T ss_dssp EEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCS
T ss_pred EEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE-Eecc
Confidence 99988776 667777777999998654322111 12345788998887776 455777777999998766543 2321
Q ss_pred -CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1907 -PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH-----ENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1907 -~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH-----s~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
......|.++...++|++.+ |+. +-|..||..+++........ ...|.++...++|.+.+ |+.++-|..|+
T Consensus 445 ~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~ 521 (781)
T 3v9f_A 445 EKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYT 521 (781)
T ss_dssp TTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEEC
T ss_pred CCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEe
Confidence 12335688898888876544 555 55899998776554433222 46799999999888555 44434477788
Q ss_pred CCCCe
Q psy8748 1981 ESNTI 1985 (2004)
Q Consensus 1981 lstg~ 1985 (2004)
..++.
T Consensus 522 ~~~~~ 526 (781)
T 3v9f_A 522 PDMQL 526 (781)
T ss_dssp TTCCE
T ss_pred CCCCe
Confidence 77653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=8.7e-05 Score=87.71 Aligned_cols=238 Identities=10% Similarity=0.088 Sum_probs=147.0
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC-C-------------------CCceEEEEEec-CCCEEE
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL-R-------------------SAWVMSVAFAQ-SGNFVA 1750 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~-H-------------------t~~ItsLafSP-dg~~La 1750 (2004)
-....+++|+++|++++++..++.|..||..+++... +.. . ...+.++++.+ +++++
T Consensus 18 ~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~- 95 (322)
T 2fp8_A 18 SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY- 95 (322)
T ss_dssp SSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-
T ss_pred cCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCcEE-
Confidence 3456789999999878888889999999987654432 221 0 12478999997 55544
Q ss_pred EeecCCeEEEEEcCCCCCCCcceEEEE-Eec-CccceeeeEEeC-CCcEEEeec------------------CCeEEEEE
Q psy8748 1751 CGGMDNMCTVYDLNNRDSTGAAKVIRE-LLG-YEGFLSSCRFID-DTTLLTGSG------------------DMKIVTWN 1809 (2004)
Q Consensus 1751 SGS~DGtIrVWDl~t~~~~~~~k~i~s-l~g-h~~~Vssvafsd-d~~LlSgS~------------------DGtI~IWD 1809 (2004)
++...+.|..++..++. ...... ..+ .......+.+.+ ++.++++.. +|.|..||
T Consensus 96 v~d~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGH----ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEETTTEEEEECTTCEE----CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEECCCCEEEEeCCCCE----EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 44444557778765321 111111 111 112345677766 666666543 37799999
Q ss_pred CCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCCCCEEEEEEC
Q psy8748 1810 LETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKK--CVQTFFGHEADVNSVCFHPSGLAFATGSE 1886 (2004)
Q Consensus 1810 l~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k--~I~tl~~h~s~ItsIafSPdg~~LaSgS~ 1886 (2004)
..+++... .. ........++++++++.++++. ..+.|..|++.... ....+....+ ...+++.++|++.++...
T Consensus 172 ~~~~~~~~-~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 172 PSTKETTL-LL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TTTTEEEE-EE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred CCCCEEEE-ec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 87765432 11 1223456799999999777664 56889999987421 1112211223 788999999987666544
Q ss_pred ----------CCeEEEEEccCCceeEEEcCCCC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1887 ----------DKTARLFDIRADQQIATYLPPNK--NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1887 ----------DGtIrIWDLrtgk~i~t~~~~~~--~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
.+.|..+|.. ++.+..+..+.. ...++.+++ .+++++++...++.|..+++.
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 4678888874 666666643321 234566666 355555555567889999874
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.4e-05 Score=88.72 Aligned_cols=196 Identities=11% Similarity=0.007 Sum_probs=139.4
Q ss_pred ceeeeEEeCCCcEEEeec---CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEE
Q psy8748 1784 FLSSCRFIDDTTLLTGSG---DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKCV 1859 (2004)
Q Consensus 1784 ~Vssvafsdd~~LlSgS~---DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~I 1859 (2004)
....+.+.+++.++.++. ++.|.++|..+++.+..+..+.......++++ ++.++.+. .++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 357888887567666653 58999999999998877643332233456665 55565555 5789999999999998
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCC---CCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy8748 1860 QTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN---SGFTSCAVSSSGRYIFCGSDDNNVHV 1936 (2004)
Q Consensus 1860 ~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~---s~ItsLafSPdG~~LaSGSsDGsIrI 1936 (2004)
.++...... ...+++||+.++++..++.|.++|..+.+....+...... .....+.|. +|...+....++.|.+
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR 176 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence 888543122 2345667877777777899999999998888777543221 235677777 6755555445789999
Q ss_pred EECCCCeeeEEEccC-------------CCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCC
Q psy8748 1937 WDLLKTTHNGVLSGH-------------ENRVTSISLSPNGMAL-VTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1937 WDL~tge~l~tL~gH-------------s~~VtsLaFSPDg~~L-aSgS~DGtIrIWdlstg 1984 (2004)
.|..+++.+..+... .....+|+|+|+++.+ +++...+.|.+.++...
T Consensus 177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999999999888531 1356999999998755 55556788888887653
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00026 Score=94.18 Aligned_cols=282 Identities=13% Similarity=0.016 Sum_probs=179.9
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee--------------CCCCceEEEEEecCCCEEEEeecCCe
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP--------------LRSAWVMSVAFAQSGNFVACGGMDNM 1757 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~--------------~Ht~~ItsLafSPdg~~LaSGS~DGt 1757 (2004)
...|+++...++|. |..|+..+-|.++|..++....... .....|.++...++|... .|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCe
Confidence 35699999888776 5556664568899987765432211 134579999998888744 5665666
Q ss_pred EEEEEcCCCCCCCcceEEEEE-------ecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEe--eccccCCeE
Q psy8748 1758 CTVYDLNNRDSTGAAKVIREL-------LGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV--AQAHIGDVV 1828 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl-------~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~i--l~~h~~~It 1828 (2004)
|..|+..... ....... .-....|.++....++.+.+|+.++.|..||..++...... .......|.
T Consensus 335 l~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~ 410 (781)
T 3v9f_A 335 INFISNAPPT----FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL 410 (781)
T ss_dssp EEEECSSCCS----CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred EEEeCCCCCc----ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence 8888876432 1111110 11234577777777788999998888999998765432110 012345689
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEc
Q psy8748 1829 SISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF---GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~---~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~ 1905 (2004)
++...++|+ |.+|+.++.+..+|..+++.. .+. .....|.++...++|. +..|+. +.+..||..+++......
T Consensus 411 ~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~ 486 (781)
T 3v9f_A 411 CSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYD 486 (781)
T ss_dssp EEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEEC
T ss_pred EEEECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEeccc
Confidence 999887776 556777778999998776543 332 1345788998888775 555665 569999988766543332
Q ss_pred CC---CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc---CCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1906 PP---NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG---HENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1906 ~~---~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g---Hs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
.. .....|.++..+++|++.+. +.++-+..||..+++....... ....|.++...++|.+.++. .+|.|..|
T Consensus 487 ~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~ 564 (781)
T 3v9f_A 487 TSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFP 564 (781)
T ss_dssp TTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEES
T ss_pred CcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEE
Confidence 11 11356889999998886554 4433477888766654332211 24578999999888865544 46655888
Q ss_pred ECCCCe
Q psy8748 1980 QESNTI 1985 (2004)
Q Consensus 1980 dlstg~ 1985 (2004)
+..++.
T Consensus 565 d~~~~~ 570 (781)
T 3v9f_A 565 SARNFD 570 (781)
T ss_dssp CTTTCC
T ss_pred CCCCCc
Confidence 887664
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00063 Score=77.99 Aligned_cols=237 Identities=8% Similarity=-0.019 Sum_probs=145.1
Q ss_pred CEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEE-eecCCeEEEEECCCCceeEEeecccc
Q psy8748 1747 NFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLT-GSGDMKIVTWNLETGQRIHEVAQAHI 1824 (2004)
Q Consensus 1747 ~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlS-gS~DGtI~IWDl~tg~~i~~il~~h~ 1824 (2004)
.+|+.+.. +.|+.++++...... ......+.........+++.+ ++.++. ...++.|..++...+... .......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~-~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~ 78 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKK-TEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TIIRQDL 78 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCG-GGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEECTTC
T ss_pred cEEEEEcC-CeEEEEEecCccccc-ccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-EEEECCC
Confidence 44555543 478888887543211 000111111123566788875 455554 445789999999765543 3332333
Q ss_pred CCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEEccCCce
Q psy8748 1825 GDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE---DKTARLFDIRADQQ 1900 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~---DGtIrIWDLrtgk~ 1900 (2004)
.....+++++++..++.+. ..+.|.+++...................++++|++..++.+.. .+.|..+++... .
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~ 157 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-N 157 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-C
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-C
Confidence 5678999999766666554 4678999998654322222222256789999997666655554 368888887643 3
Q ss_pred eEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSS-WDQFVKV 1978 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS-~DGtIrI 1978 (2004)
...+.. ........+++++++..|+.+.. .+.|.++|.........+.+ .....+++.. +..|+.+. ..+.|..
T Consensus 158 ~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 158 RRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp CEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred cEEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 233321 12245788999998877766554 57999999875444333332 3345677764 44555554 5689999
Q ss_pred EECCCCeEEEEEE
Q psy8748 1979 WQESNTIVWKVLK 1991 (2004)
Q Consensus 1979 Wdlstg~l~k~Ik 1991 (2004)
++..+++..+.+.
T Consensus 234 ~d~~~g~~~~~i~ 246 (267)
T 1npe_A 234 MDLAISKEMDTFH 246 (267)
T ss_dssp EETTTTEEEEEEC
T ss_pred EeCCCCCceEEEc
Confidence 9999987666664
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.0001 Score=91.96 Aligned_cols=188 Identities=12% Similarity=0.156 Sum_probs=130.9
Q ss_pred EEEeecCCeEEEEECCCC----ceeEEee------ccccCCeEEEEECCCCCEEEEEECC------CeEEEEECCCCeEE
Q psy8748 1796 LLTGSGDMKIVTWNLETG----QRIHEVA------QAHIGDVVSISLSPDGQYFVTGSVD------KSCKLWDFREKKCV 1859 (2004)
Q Consensus 1796 LlSgS~DGtI~IWDl~tg----~~i~~il------~~h~~~ItsLafSPdg~~LaSGS~D------GsIrIWDlrs~k~I 1859 (2004)
++.+..++.|+++|..+. +....+. .........+.+.|+| .++++..+ |.|.++|..+.+.+
T Consensus 99 ~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~ 177 (462)
T 2ece_A 99 IVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPL 177 (462)
T ss_dssp EEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEE
T ss_pred EEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEE
Confidence 555677899999999755 3332220 1111245667889999 66665555 78999999999999
Q ss_pred EEEecCCC---CeEEEEEeCCCCEEEEEE-------------------CCCeEEEEEccCCceeEEEcCCCCCCCeEEEE
Q psy8748 1860 QTFFGHEA---DVNSVCFHPSGLAFATGS-------------------EDKTARLFDIRADQQIATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1860 ~tl~~h~s---~ItsIafSPdg~~LaSgS-------------------~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLa 1917 (2004)
.++..... --..+.|+|+++.+++.. .+.+|.+||+.+++...++...........+.
T Consensus 178 ~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~ 257 (462)
T 2ece_A 178 GKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELR 257 (462)
T ss_dssp EECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEE
T ss_pred EEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeE
Confidence 88863322 234588899999888874 36899999999988887775532223445555
Q ss_pred E--cCCCCEEEEEeC------CCeEEEEECCCCee--eEEE--ccC----------------CCCeEEEEEcCCCCEEEE
Q psy8748 1918 V--SSSGRYIFCGSD------DNNVHVWDLLKTTH--NGVL--SGH----------------ENRVTSISLSPNGMALVT 1969 (2004)
Q Consensus 1918 f--SPdG~~LaSGSs------DGsIrIWDL~tge~--l~tL--~gH----------------s~~VtsLaFSPDg~~LaS 1969 (2004)
| +|+|+++++++. +++|.+|....++. ...+ ... ......|.+++||++|++
T Consensus 258 f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYV 337 (462)
T 2ece_A 258 PLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYL 337 (462)
T ss_dssp ECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEE
T ss_pred eeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEE
Confidence 5 999999988874 56888776544431 1111 110 245789999999999988
Q ss_pred EEC-CCeEEEEECCCC
Q psy8748 1970 SSW-DQFVKVWQESNT 1984 (2004)
Q Consensus 1970 gS~-DGtIrIWdlstg 1984 (2004)
+.. .+.|.+||+.+.
T Consensus 338 Snrg~d~VavfdV~d~ 353 (462)
T 2ece_A 338 SLWGIGEVRQYDISNP 353 (462)
T ss_dssp EETTTTEEEEEECSST
T ss_pred EeCCCCEEEEEEecCC
Confidence 876 689999999643
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=4.9e-05 Score=89.87 Aligned_cols=238 Identities=9% Similarity=0.013 Sum_probs=151.3
Q ss_pred ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEe-----------------cCccceeeeEEeC-CCcEE
Q psy8748 1736 WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELL-----------------GYEGFLSSCRFID-DTTLL 1797 (2004)
Q Consensus 1736 ~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~-----------------gh~~~Vssvafsd-d~~Ll 1797 (2004)
...+++|+++++.++++..++.|..|+...+. ........ ........+++.+ ++.++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG----FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTC----EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCc----eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence 45678899999878888888999999876432 11111100 0112456777875 77788
Q ss_pred EeecCCeEEEEECCCCceeEEee---cc-ccCCeEEEEECC-CCCEEEEEEC-----------------CCeEEEEECCC
Q psy8748 1798 TGSGDMKIVTWNLETGQRIHEVA---QA-HIGDVVSISLSP-DGQYFVTGSV-----------------DKSCKLWDFRE 1855 (2004)
Q Consensus 1798 SgS~DGtI~IWDl~tg~~i~~il---~~-h~~~ItsLafSP-dg~~LaSGS~-----------------DGsIrIWDlrs 1855 (2004)
++...+.|..+|..++... .+. .+ .......+++.+ +|+..++-.. +|.|..||..+
T Consensus 96 v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 8877777889987765432 221 11 123468899999 8876555322 36799999877
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEEccCCc--eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC--
Q psy8748 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATG-SEDKTARLFDIRADQ--QIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-- 1930 (2004)
Q Consensus 1856 ~k~I~tl~~h~s~ItsIafSPdg~~LaSg-S~DGtIrIWDLrtgk--~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-- 1930 (2004)
++..... ..-.....++++++++.++++ +.++.|.+|++.... ....+.. ... ...++++++|++.++...
T Consensus 175 ~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~~~ 250 (322)
T 2fp8_A 175 KETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSEEL 250 (322)
T ss_dssp TEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEEET
T ss_pred CEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecCcc
Confidence 7643322 222345689999999876665 456899999987521 1122211 112 678899999997766544
Q ss_pred --------CCeEEEEECCCCeeeEEEccCC----CCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1931 --------DNNVHVWDLLKTTHNGVLSGHE----NRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1931 --------DGsIrIWDL~tge~l~tL~gHs----~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
.+.|..+|. .++.+..+.... ..++++++ .++.+.++....+.|..+++...
T Consensus 251 ~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred cccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 467888886 577776665432 34677776 45665666566788999988643
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-05 Score=103.75 Aligned_cols=271 Identities=13% Similarity=0.078 Sum_probs=155.9
Q ss_pred EEEEeC-CCCEEEEEeCCC-----------eEEEEECCCCceE--EEeeC-CCCceEEEEEecCCCEEEEeec-CCeEEE
Q psy8748 1697 SVHYSG-DSRHCVSGSLDG-----------KLIIWDTWTGNKT--QVIPL-RSAWVMSVAFAQSGNFVACGGM-DNMCTV 1760 (2004)
Q Consensus 1697 sLaFSP-DG~~LASGS~DG-----------tIrVWDl~Tgk~l--~ti~~-Ht~~ItsLafSPdg~~LaSGS~-DGtIrV 1760 (2004)
+.++.+ +++.++.||.++ .+.+||..+++.. ..... +.....++++..+++.+++|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887643 5889999887533 22322 3334456788889999999984 458999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEEee-cC-----CeEEEEECCCCceeEEee---ccccCCeEEE
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLTGS-GD-----MKIVTWNLETGQRIHEVA---QAHIGDVVSI 1830 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlSgS-~D-----GtI~IWDl~tg~~i~~il---~~h~~~ItsL 1830 (2004)
||..+.. ............. .++... ++..++.|+ .+ ..+.+||..+++...... ......-...
T Consensus 270 yd~~t~~----W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~ 344 (656)
T 1k3i_A 270 YDSSSDS----WIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG 344 (656)
T ss_dssp EEGGGTE----EEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred ecCcCCc----eeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence 9987542 2222112211222 233444 666677777 34 569999998876432100 0000000001
Q ss_pred EECCCCCEEEEEECCC---------eEEEEECCCCeEEEEEecCC---------CCeEEEEEeC-CCCEEEEEECCC---
Q psy8748 1831 SLSPDGQYFVTGSVDK---------SCKLWDFREKKCVQTFFGHE---------ADVNSVCFHP-SGLAFATGSEDK--- 1888 (2004)
Q Consensus 1831 afSPdg~~LaSGS~DG---------sIrIWDlrs~k~I~tl~~h~---------s~ItsIafSP-dg~~LaSgS~DG--- 1888 (2004)
.+..++..++.|+.+| .+..||..+.........+. ..-.++.|.. +++++++|+.++
T Consensus 345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 1223455556665444 56788887765433322221 1234445543 677788887543
Q ss_pred --------eEEEEEccCCceeEEE-cCCCCCCCeEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCeeeEE-
Q psy8748 1889 --------TARLFDIRADQQIATY-LPPNKNSGFTSCAVSSSGRYIFCGSDD-----------NNVHVWDLLKTTHNGV- 1947 (2004)
Q Consensus 1889 --------tIrIWDLrtgk~i~t~-~~~~~~s~ItsLafSPdG~~LaSGSsD-----------GsIrIWDL~tge~l~t- 1947 (2004)
.|.+||..+....... ..........+++..++|+++++|+.+ ..+.+||..+.+-...
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 6888888766544332 011111223455677899999999854 4689999876553321
Q ss_pred -EccCCCCeEEEEEcCCCCEEEEEEC
Q psy8748 1948 -LSGHENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1948 -L~gHs~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
............+.++|+.++.||.
T Consensus 505 ~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 505 PNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCccccccHhhcCCCcEEEecCCC
Confidence 1112222344556789999999985
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00012 Score=94.46 Aligned_cols=261 Identities=14% Similarity=0.083 Sum_probs=158.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCC----ceEE-EEEecCCCEEEEeec------CCeEEEEEcCCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSA----WVMS-VAFAQSGNFVACGGM------DNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~----~Its-LafSPdg~~LaSGS~------DGtIrVWDl~t~~~~~~~ 1772 (2004)
+..++.++.|+.+..+|..+|+.+........ .+.+ .... +..+++++. +|.|..+|..+++.....
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 45678888899999999999999987754321 1211 1111 345555554 789999999876532211
Q ss_pred eEEEEE-ec------------------------------Cccce-eeeEEeC-CCcEEEeecC----------------C
Q psy8748 1773 KVIREL-LG------------------------------YEGFL-SSCRFID-DTTLLTGSGD----------------M 1803 (2004)
Q Consensus 1773 k~i~sl-~g------------------------------h~~~V-ssvafsd-d~~LlSgS~D----------------G 1803 (2004)
...... .. ....+ ..+.+.. .+.++.++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 110000 00 00000 1123332 3455555532 3
Q ss_pred eEEEEECCCCceeEEeecccc--------CCeEEEEECCCCC---EEEEEECCCeEEEEECCCCeEEEEEecCC------
Q psy8748 1804 KIVTWNLETGQRIHEVAQAHI--------GDVVSISLSPDGQ---YFVTGSVDKSCKLWDFREKKCVQTFFGHE------ 1866 (2004)
Q Consensus 1804 tI~IWDl~tg~~i~~il~~h~--------~~ItsLafSPdg~---~LaSGS~DGsIrIWDlrs~k~I~tl~~h~------ 1866 (2004)
.|..+|.++|+.+......+. ....-+....+|+ .++.++.+|.++++|..+++.+.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 699999999998766643221 1111122224664 57788899999999999999877654221
Q ss_pred -------CCe--------------------------EEEEEeCCCCEEEEEE----------------------------
Q psy8748 1867 -------ADV--------------------------NSVCFHPSGLAFATGS---------------------------- 1885 (2004)
Q Consensus 1867 -------s~I--------------------------tsIafSPdg~~LaSgS---------------------------- 1885 (2004)
.++ ..++++|+...+++.+
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2357888777777654
Q ss_pred ---------CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCC-e
Q psy8748 1886 ---------EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-V 1955 (2004)
Q Consensus 1886 ---------~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~-V 1955 (2004)
.+|.|..||..+++...++..... +....+...+..+++++.||.|+.||.++++.+..+...... -
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~---~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 509 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG 509 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecCCCC---ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEe
Confidence 347899999999998887743221 122223335677888999999999999999999888643221 1
Q ss_pred EEEEEcCCCCEEEE
Q psy8748 1956 TSISLSPNGMALVT 1969 (2004)
Q Consensus 1956 tsLaFSPDg~~LaS 1969 (2004)
.-+.+..+|+.++.
T Consensus 510 ~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 510 SPMTYSFKGKQYIG 523 (571)
T ss_dssp CCEEEEETTEEEEE
T ss_pred eeEEEEECCEEEEE
Confidence 22334567764443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00022 Score=83.58 Aligned_cols=208 Identities=13% Similarity=0.080 Sum_probs=140.0
Q ss_pred ceEEEeeCCC-CceEEEEEecCCCEEEEeec--CCeEEEEEcCCCCCCCcceEEEEEe-cCccceeeeEEeCCCcEEEee
Q psy8748 1725 NKTQVIPLRS-AWVMSVAFAQSGNFVACGGM--DNMCTVYDLNNRDSTGAAKVIRELL-GYEGFLSSCRFIDDTTLLTGS 1800 (2004)
Q Consensus 1725 k~l~ti~~Ht-~~ItsLafSPdg~~LaSGS~--DGtIrVWDl~t~~~~~~~k~i~sl~-gh~~~Vssvafsdd~~LlSgS 1800 (2004)
+.+.+++... .....+.|++++..+++.+. ++.|.++|..+++ ...... +.......+.+.++...++.-
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~------v~~~i~l~~~~fgeGi~~~g~~lyv~t~ 83 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK------VENIHKMDDSYFGEGLTLLNEKLYQVVW 83 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC------EEEEEECCTTCCEEEEEEETTEEEEEET
T ss_pred eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC------EEEEEecCCCcceEEEEEeCCEEEEEEe
Confidence 4455554322 34689999998765555543 5799999998763 333332 222233345555544455555
Q ss_pred cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCeEEEEEe
Q psy8748 1801 GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE-----ADVNSVCFH 1875 (2004)
Q Consensus 1801 ~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~-----s~ItsIafS 1875 (2004)
.++.+.++|..+.+.+..+..+ ...-.. +++||+.++++..++.|.++|..+.+.+..+.-.. ..++.+.|.
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-MKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-SSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred cCCEEEEEECCCCcEEEEEECC-CCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 6899999999999888776444 122233 44577777777778999999999988877775321 136688888
Q ss_pred CCCCEEEEEECCCeEEEEEccCCceeEEEcCCC-----------CCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Q psy8748 1876 PSGLAFATGSEDKTARLFDIRADQQIATYLPPN-----------KNSGFTSCAVSSSGRYIFC-GSDDNNVHVWDLLKT 1942 (2004)
Q Consensus 1876 Pdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~-----------~~s~ItsLafSPdG~~LaS-GSsDGsIrIWDL~tg 1942 (2004)
+|..++....++.|.+.|..+++.+..+...+ .......++|+|+++.+++ +...+.+.+.++...
T Consensus 161 -dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 161 -NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp -TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred -CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 67544444457899999999999988885431 1135689999999876555 546788888887543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00013 Score=94.89 Aligned_cols=256 Identities=13% Similarity=0.099 Sum_probs=155.0
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEeeCCCC----ceEE-EEEecCCCEEEEee------cCCeEEEEEcCCCCCCCcceE
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQVIPLRSA----WVMS-VAFAQSGNFVACGG------MDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~----~Its-LafSPdg~~LaSGS------~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
+++.++.|+.+..+|..+|+.+........ .+.+ -... ++ .+++++ .+|.|+.+|..+++.......
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 378888899999999999999887654321 1211 1111 34 555554 378999999987653221111
Q ss_pred EEEEec-------------------------------Cccce-eeeEEe-CCCcEEEeecC----------------CeE
Q psy8748 1775 IRELLG-------------------------------YEGFL-SSCRFI-DDTTLLTGSGD----------------MKI 1805 (2004)
Q Consensus 1775 i~sl~g-------------------------------h~~~V-ssvafs-dd~~LlSgS~D----------------GtI 1805 (2004)
...... ....+ ....+. ..+.++.++.+ +.|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 000000 00000 012232 34556666654 489
Q ss_pred EEEECCCCceeEEeeccccC--------CeEEEEEC-CCC---CEEEEEECCCeEEEEECCCCeEEEEEecCC-------
Q psy8748 1806 VTWNLETGQRIHEVAQAHIG--------DVVSISLS-PDG---QYFVTGSVDKSCKLWDFREKKCVQTFFGHE------- 1866 (2004)
Q Consensus 1806 ~IWDl~tg~~i~~il~~h~~--------~ItsLafS-Pdg---~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~------- 1866 (2004)
..+|.++|+........+.. ...-+... .+| ..++.++.+|.++++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 99999999988766443321 11112222 467 467778899999999999999877654211
Q ss_pred ------CCe--------------------------EEEEEeCCCCEEEEEE-----------------------------
Q psy8748 1867 ------ADV--------------------------NSVCFHPSGLAFATGS----------------------------- 1885 (2004)
Q Consensus 1867 ------s~I--------------------------tsIafSPdg~~LaSgS----------------------------- 1885 (2004)
.++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 111 2356777665554431
Q ss_pred ----------CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCe
Q psy8748 1886 ----------EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRV 1955 (2004)
Q Consensus 1886 ----------~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~V 1955 (2004)
.+|.+..||+.+++.+.+..... ....-.+...+..+++|+.||.++.||.++|+.+..++...+.+
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~ 517 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAI 517 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCCC---CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcE
Confidence 34789999999999887774221 11111123357788889999999999999999998886433221
Q ss_pred -EEEEEcCCCCE
Q psy8748 1956 -TSISLSPNGMA 1966 (2004)
Q Consensus 1956 -tsLaFSPDg~~ 1966 (2004)
.-+.+..+|+.
T Consensus 518 ~~P~~y~~~G~q 529 (599)
T 1w6s_A 518 GYPMTYTHKGTQ 529 (599)
T ss_dssp SCCEEEEETTEE
T ss_pred eccEEEEeCCEE
Confidence 22445567764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0019 Score=77.12 Aligned_cols=273 Identities=11% Similarity=0.074 Sum_probs=155.0
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee----CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP----LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~----~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
...+.+|.|.+++..+++ +.+|.|. +....|+.-.... .....+.++.|.+ +..++ ++..|.|.. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 347999999877777774 5677653 3333343322222 1245688999986 44444 455664433 222222
Q ss_pred CCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCe
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGs 1847 (2004)
..............+..+.+.+++.+++++.+|.|.. ..+.|+.-..........+..+.+.+++.+++++. +|.
T Consensus 110 ---tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~ 184 (327)
T 2xbg_A 110 ---SWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGS 184 (327)
T ss_dssp ---SCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSS
T ss_pred ---CceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCc
Confidence 2222111111223345566655566666666675533 22334433344445566789999999888776664 454
Q ss_pred EEE-EEC--CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC--CCCCCeEEEEEcCCC
Q psy8748 1848 CKL-WDF--REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP--NKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1848 IrI-WDl--rs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~--~~~s~ItsLafSPdG 1922 (2004)
+.. +|- .+.+.+. ......+..+.+.+++..+ .++.+|.+++.+...++.-.....+ .....+..+.+.+++
T Consensus 185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~ 261 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN 261 (327)
T ss_dssp EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC
Confidence 444 442 2333332 2445678899999988755 4556888877643323332222212 122358889999888
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLS---GHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge~l~tL~---gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
..+++| .+|.| ++....++.-..+. .+...+.++.|.+++ .++.++.+|.|.-++
T Consensus 262 ~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 262 EVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp CEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 877766 46766 44554454444443 234568889887554 467777899776554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.21 E-value=7e-05 Score=87.37 Aligned_cols=183 Identities=11% Similarity=0.063 Sum_probs=128.1
Q ss_pred ceeeeEEeCCCcEEEeecCC--eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEE
Q psy8748 1784 FLSSCRFIDDTTLLTGSGDM--KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1784 ~Vssvafsdd~~LlSgS~DG--tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~I~ 1860 (2004)
....+.|.++..+.+++.+| .|+.+|+.+++............-..+++ +++.++... .++.+.+||..+.+.+.
T Consensus 44 ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 34677887554455556655 89999999999887764332222233444 355666555 57899999999999999
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCC---CCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy8748 1861 TFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN---SGFTSCAVSSSGRYIFCGSDDNNVHVW 1937 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~---s~ItsLafSPdG~~LaSGSsDGsIrIW 1937 (2004)
++.... .-..+ ++++..++.+..++.|.++|..+.+....+...... ..+..+.|. +|+..+..-.++.|.+.
T Consensus 122 ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vI 197 (262)
T 3nol_A 122 SFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRI 197 (262)
T ss_dssp EEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEE
Confidence 886533 22333 456777777766888999999999988877543222 234456666 67655555468899999
Q ss_pred ECCCCeeeEEEccC------------CCCeEEEEEcCCCCEEEEEEC
Q psy8748 1938 DLLKTTHNGVLSGH------------ENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1938 DL~tge~l~tL~gH------------s~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
|..+++.+..+... ....++|+|+|+++.|+..|.
T Consensus 198 Dp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 198 DPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999887532 235699999999888877774
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00016 Score=93.69 Aligned_cols=261 Identities=14% Similarity=0.149 Sum_probs=156.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCC----ceE-EEEEec---CCC-EEEEee------cCCeEEEEEcCCCCC
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSA----WVM-SVAFAQ---SGN-FVACGG------MDNMCTVYDLNNRDS 1768 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~----~It-sLafSP---dg~-~LaSGS------~DGtIrVWDl~t~~~ 1768 (2004)
+..++.++.|+.|..+|..+|+.+........ .+. .-.... +++ .+++++ .+|.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45677788899999999999999987754321 111 111111 122 566655 378999999887653
Q ss_pred CCcceEE----E-------EEe---cC--------------------cc-ceeeeEEe-CCCcEEEeec-----------
Q psy8748 1769 TGAAKVI----R-------ELL---GY--------------------EG-FLSSCRFI-DDTTLLTGSG----------- 1801 (2004)
Q Consensus 1769 ~~~~k~i----~-------sl~---gh--------------------~~-~Vssvafs-dd~~LlSgS~----------- 1801 (2004)
....... . ... +. .. .-...++. ..+.+++++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 2211100 0 000 00 00 00112333 2345555552
Q ss_pred ---------C----CeEEEEECCCCceeEEeeccccC--------CeEEEEEC-CCCC---EEEEEECCCeEEEEECCCC
Q psy8748 1802 ---------D----MKIVTWNLETGQRIHEVAQAHIG--------DVVSISLS-PDGQ---YFVTGSVDKSCKLWDFREK 1856 (2004)
Q Consensus 1802 ---------D----GtI~IWDl~tg~~i~~il~~h~~--------~ItsLafS-Pdg~---~LaSGS~DGsIrIWDlrs~ 1856 (2004)
| +.|..+|..+|+.+......+.. ...-+... .+|+ .++.++.+|.++++|.+++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 2 68999999999988766433211 11112221 4664 7888999999999999999
Q ss_pred eEEEEEecCC-------------CCe--------------------------------EEEEEeCCCCEEEEEE------
Q psy8748 1857 KCVQTFFGHE-------------ADV--------------------------------NSVCFHPSGLAFATGS------ 1885 (2004)
Q Consensus 1857 k~I~tl~~h~-------------s~I--------------------------------tsIafSPdg~~LaSgS------ 1885 (2004)
+.+..+.... .++ ..++++|+...+++..
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 9877654321 000 1345666555554432
Q ss_pred ---------------------------CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1886 ---------------------------EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1886 ---------------------------~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
.+|.|..||+.+++...+...... ...-.....+..+++|+.||.++.||
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP---LWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC---CCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC---CcccceEeCCCEEEEECCCCcEEEEE
Confidence 257899999999998877643221 11111222477888899999999999
Q ss_pred CCCCeeeEEEccCCCCe-EEEEEcCCCCEE
Q psy8748 1939 LLKTTHNGVLSGHENRV-TSISLSPNGMAL 1967 (2004)
Q Consensus 1939 L~tge~l~tL~gHs~~V-tsLaFSPDg~~L 1967 (2004)
.++|+.+..++...+.+ .-+.|..+|+..
T Consensus 514 ~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 514 AKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 99999999887543322 225566677643
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00032 Score=82.59 Aligned_cols=235 Identities=12% Similarity=0.044 Sum_probs=141.8
Q ss_pred ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC--
Q psy8748 1725 NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD-- 1802 (2004)
Q Consensus 1725 k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D-- 1802 (2004)
+.+..+... ....+++|+++++.+++-..++.|..|+.+.. ... ..........+++.+++.++++...
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-------~~~-~~~~~~~p~gia~~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-------QQI-HATVEGKVSGLAFTSNGDLVATGWNAD 93 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-------EEE-EEECSSEEEEEEECTTSCEEEEEECTT
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-------eEE-EEeCCCCceeEEEcCCCcEEEEeccCC
Confidence 334444432 45788999999987777767888988887532 111 1122345777888866666666532
Q ss_pred -CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE-EEEEec---------CCCCeEE
Q psy8748 1803 -MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC-VQTFFG---------HEADVNS 1871 (2004)
Q Consensus 1803 -GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~-I~tl~~---------h~s~Its 1871 (2004)
..|..+|..+++...............++..+++..+++-..+|.|+.+|...+.. +..... .-...+.
T Consensus 94 ~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 94 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 173 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred cceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence 25777887777654222111222334555555554444433588999999876532 211111 1123455
Q ss_pred EEEeCCCCEEEEEE-CCCeEEEEEccC-Cce--eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-
Q psy8748 1872 VCFHPSGLAFATGS-EDKTARLFDIRA-DQQ--IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNG- 1946 (2004)
Q Consensus 1872 IafSPdg~~LaSgS-~DGtIrIWDLrt-gk~--i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~- 1946 (2004)
+ +++++.++++. ..+.|..||+.. ++. ...+... .....++++++|+++++....+.|.++|.. ++...
T Consensus 174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTII 247 (306)
T ss_dssp E--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEE
T ss_pred c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEE
Confidence 5 78887665554 567899999874 321 1111101 224567899999887777678899999974 65532
Q ss_pred -EEccCCCCeEEEEEc---CCCCEEEEEECCC
Q psy8748 1947 -VLSGHENRVTSISLS---PNGMALVTSSWDQ 1974 (2004)
Q Consensus 1947 -tL~gHs~~VtsLaFS---PDg~~LaSgS~DG 1974 (2004)
.+.......++++|. +++..|+.++..+
T Consensus 248 ~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 248 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred eecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 233334678999998 8887777766543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00069 Score=79.68 Aligned_cols=229 Identities=13% Similarity=0.091 Sum_probs=139.1
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCC--eEEEEEcCCCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN--MCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG--tIrVWDl~t~~~~~ 1770 (2004)
.....++|+++|+++++-..++.|..||... +....+. ......++++.++|+++++....+ .|..++..++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~--- 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT--- 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC---
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe---
Confidence 4678999999999777776789999999764 4433333 235688999999999666554332 45556654432
Q ss_pred cceEEEEEecCccceeeeEEeCCCcEEEee-cCCeEEEEECCCCce-eEEee--------ccccCCeEEEEECCCCCEEE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDTTLLTGS-GDMKIVTWNLETGQR-IHEVA--------QAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~~LlSgS-~DGtI~IWDl~tg~~-i~~il--------~~h~~~ItsLafSPdg~~La 1840 (2004)
........ .......++...++.++++. .+|.|+.+|...+.. +.... .........+ +++++.++
T Consensus 107 -~~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly 182 (306)
T 2p4o_A 107 -VETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY 182 (306)
T ss_dssp -EEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred -EEEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence 12222211 11222333334455555444 588999999876532 11100 0111234455 77887776
Q ss_pred EEE-CCCeEEEEECCC-CeE--EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1841 TGS-VDKSCKLWDFRE-KKC--VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1841 SGS-~DGsIrIWDlrs-~k~--I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
++. ..+.|..||+.. +.. ...+.. ......++++++|+++++....+.|.++|.. ++..............+++
T Consensus 183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 183 VSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred EEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 665 467899999874 321 111211 1346778999999877776678899999975 5543221112222457899
Q ss_pred EEc---CCCCEEEEEeCCC
Q psy8748 1917 AVS---SSGRYIFCGSDDN 1932 (2004)
Q Consensus 1917 afS---PdG~~LaSGSsDG 1932 (2004)
+|. ++++.|++++..+
T Consensus 261 a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECCSTTTTTEEEEEECTT
T ss_pred EEecccCCCCEEEEECCCC
Confidence 998 8888888776544
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00018 Score=83.96 Aligned_cols=182 Identities=9% Similarity=0.013 Sum_probs=129.0
Q ss_pred ceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q psy8748 1784 FLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863 (2004)
Q Consensus 1784 ~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~ 1863 (2004)
....+.|.++..+++.+.+|.|+.+|+.+++.+... ......-..+++.. ++..+..-.++.+.+||..+.+.+.++.
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 346777777666777888899999999999988776 33222223455543 2344444468899999999999999887
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCC---CeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNS---GFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1864 ~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s---~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
... .-..++ +++..++.+..++.|.++|..+.+...++....... .+..+.|. +|+..+....++.|.+.|..
T Consensus 134 ~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 134 YSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA 209 (268)
T ss_dssp CSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred CCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence 532 234444 567788887779999999999999888775433222 34566666 67655444467899999999
Q ss_pred CCeeeEEEccC-------------CCCeEEEEEcCCCCEEEEEE
Q psy8748 1941 KTTHNGVLSGH-------------ENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1941 tge~l~tL~gH-------------s~~VtsLaFSPDg~~LaSgS 1971 (2004)
+++.+..+... ....++|+|+|+++.|+..|
T Consensus 210 TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 210 TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99998887521 13579999999776666555
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0005 Score=79.47 Aligned_cols=193 Identities=9% Similarity=0.025 Sum_probs=130.9
Q ss_pred eEEEEEecCc--cceeeeEEeCCCcEEEeecC--CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE-ECCCe
Q psy8748 1773 KVIRELLGYE--GFLSSCRFIDDTTLLTGSGD--MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG-SVDKS 1847 (2004)
Q Consensus 1773 k~i~sl~gh~--~~Vssvafsdd~~LlSgS~D--GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG-S~DGs 1847 (2004)
+.+..+ .|. .....+.|.++..+.+.+.+ ..|+.+|+.+++............-..+++. ++.++.. -.++.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence 444444 333 34557888775445555554 4899999999998876633322222334443 4445444 46889
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCC---CCeEEEEEcCCCCE
Q psy8748 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN---SGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1848 IrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~---s~ItsLafSPdG~~ 1924 (2004)
+.+||..+.+.+.++.... .-..++ +++..++++..+++|.++|..+.+...++....+. ..++-+.+. +|+.
T Consensus 87 v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 9999999999999887543 334444 56777777777899999999999888777543222 234555655 6665
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEccC-------------CCCeEEEEEcCCCCEEEEEEC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGH-------------ENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~gH-------------s~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
.+....+..|.+.|..+++.+..+... ....++|+++|+++.|+..|.
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 555546789999999999999887521 135689999998877777664
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00083 Score=78.40 Aligned_cols=195 Identities=12% Similarity=0.115 Sum_probs=131.1
Q ss_pred ceEEEeeC-CCCceEEEEEecCCCEEEEeecCC--eEEEEEcCCCCCCCcceEEEEEecCcc-ceeeeEEeCCCcEEEee
Q psy8748 1725 NKTQVIPL-RSAWVMSVAFAQSGNFVACGGMDN--MCTVYDLNNRDSTGAAKVIRELLGYEG-FLSSCRFIDDTTLLTGS 1800 (2004)
Q Consensus 1725 k~l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DG--tIrVWDl~t~~~~~~~k~i~sl~gh~~-~Vssvafsdd~~LlSgS 1800 (2004)
+.+.+++. .......+.|+ ++.++.+++.+| .|+++|+.+++ ......-... .-..+....+...++.-
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk------v~~~~~l~~~~FgeGit~~g~~ly~ltw 104 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK------TLQQIELGKRYFGEGISDWKDKIVGLTW 104 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC------EEEEEECCTTCCEEEEEEETTEEEEEES
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCc------EEEEEecCCccceeEEEEeCCEEEEEEe
Confidence 34455542 22446889998 677777777766 89999998764 3333322222 22335555544455555
Q ss_pred cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecC--C---CCeEEEEEe
Q psy8748 1801 GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH--E---ADVNSVCFH 1875 (2004)
Q Consensus 1801 ~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h--~---s~ItsIafS 1875 (2004)
.++.+.+||..+.+.+.++..+..+ ..++ ++++.++.+..++.|.++|..+.+.+..+.-. . ..++.+.|.
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~eG--~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDGEG--WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSCC--CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred eCCEEEEEECccCcEEEEEECCCCc--eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 6899999999999988777443322 3344 46777777766788999999998888776532 2 234557776
Q ss_pred CCCCEEEEEECCCeEEEEEccCCceeEEEcCCC----------CCCCeEEEEEcCCCCEEEEEeCC
Q psy8748 1876 PSGLAFATGSEDKTARLFDIRADQQIATYLPPN----------KNSGFTSCAVSSSGRYIFCGSDD 1931 (2004)
Q Consensus 1876 Pdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~----------~~s~ItsLafSPdG~~LaSGSsD 1931 (2004)
+|..++..-.++.|.+.|.++++....+...+ .......++++|+++.|++.+..
T Consensus 181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 67555444468899999999999988885431 12356889999988877776653
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00017 Score=92.56 Aligned_cols=183 Identities=9% Similarity=0.052 Sum_probs=131.9
Q ss_pred EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEE-C-CCCCEEEEEEC------------------CCeEEEEECCC
Q psy8748 1796 LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL-S-PDGQYFVTGSV------------------DKSCKLWDFRE 1855 (2004)
Q Consensus 1796 LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf-S-Pdg~~LaSGS~------------------DGsIrIWDlrs 1855 (2004)
++....++.|.+.|+.+.+....+.......+..+++ + |+++++++++. ++.+.++|..+
T Consensus 105 fVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t 184 (595)
T 1fwx_A 105 FMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK 184 (595)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT
T ss_pred EEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCC
Confidence 3344456789999999998775442233456888998 5 89999999852 35799999999
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC--------------------------------------eEEEEEccC
Q psy8748 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK--------------------------------------TARLFDIRA 1897 (2004)
Q Consensus 1856 ~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG--------------------------------------tIrIWDLrt 1897 (2004)
.+....+.-.. ....++++|+|+++++.+.+. .|.+.|.++
T Consensus 185 ~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~ 263 (595)
T 1fwx_A 185 WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK 263 (595)
T ss_dssp TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG
T ss_pred CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcc
Confidence 98888776433 467788999999999988653 366667666
Q ss_pred --Cce-eEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe------------eeEEEccCCCCeEEEEEc
Q psy8748 1898 --DQQ-IATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTT------------HNGVLSGHENRVTSISLS 1961 (2004)
Q Consensus 1898 --gk~-i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge------------~l~tL~gHs~~VtsLaFS 1961 (2004)
++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ....+. -......++|+
T Consensus 264 ~~~~~~~~~Ipv---g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~ 339 (595)
T 1fwx_A 264 EASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFD 339 (595)
T ss_dssp GGCCSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEEC
T ss_pred cCCceeEEEEec---CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEEC
Confidence 333 233311 12345789999999888776 47899999998653 223332 24568899999
Q ss_pred CCCCEEEEEECCCeEEEEECCC
Q psy8748 1962 PNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1962 PDg~~LaSgS~DGtIrIWdlst 1983 (2004)
++|...++.-.|++|.+|++++
T Consensus 340 ~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 340 GRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp TTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCeEEEEEecCCcEEEEEhhH
Confidence 9994445566799999999987
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.012 Score=69.98 Aligned_cols=237 Identities=8% Similarity=-0.037 Sum_probs=143.0
Q ss_pred EEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEE-EEeecCCeEEEEEcCCCCCCCcceEEEEEecCccce
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFV-ACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL 1785 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~L-aSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~V 1785 (2004)
|+.+. ...|+..|+.+++....+.. ...+.+++|++.++.+ ++-..++.|..++.+......... ......-...
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~--~~~~~~~~~p 79 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAP 79 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--EEECSSCSCC
T ss_pred EEEEC-CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE--EEEeCCCCCc
Confidence 44443 35689999888776655543 4457899999866544 455556889999886521000111 1122222344
Q ss_pred eeeEEe-CCCcE-EEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC--CeEEEEECCCCeEEEE
Q psy8748 1786 SSCRFI-DDTTL-LTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD--KSCKLWDFREKKCVQT 1861 (2004)
Q Consensus 1786 ssvafs-dd~~L-lSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D--GsIrIWDlrs~k~I~t 1861 (2004)
..+++. .++.+ ++-...+.|.++|....... .+..........++++|.+..++.+... +.|..+++.... ...
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~ 157 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYS 157 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceE-EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEE
Confidence 566665 34444 45566789999998754432 3333344567899999977766666543 688888875433 333
Q ss_pred E-ecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1862 F-FGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1862 l-~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
+ ...-.....+++++++..|+.+. ..+.|..+|+....................+++. .+..+++-...+.|..+|.
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 3 23345678999998776666554 4578999998743332222211222345677775 3555555556789999998
Q ss_pred CCCeeeEEEcc
Q psy8748 1940 LKTTHNGVLSG 1950 (2004)
Q Consensus 1940 ~tge~l~tL~g 1950 (2004)
.+++....+..
T Consensus 237 ~~g~~~~~i~~ 247 (316)
T 1ijq_A 237 LTGSDVNLLAE 247 (316)
T ss_dssp TTCCCCEEEEC
T ss_pred CCCcceEEEec
Confidence 77776666643
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00034 Score=91.53 Aligned_cols=231 Identities=13% Similarity=0.071 Sum_probs=132.1
Q ss_pred eEEEEeCCCCEEEEEeC-CCeEEEEECCCCceEEEeeCCC-CceEEEEEecCCCEEEEee-cC-----CeEEEEEcCCCC
Q psy8748 1696 NSVHYSGDSRHCVSGSL-DGKLIIWDTWTGNKTQVIPLRS-AWVMSVAFAQSGNFVACGG-MD-----NMCTVYDLNNRD 1767 (2004)
Q Consensus 1696 tsLaFSPDG~~LASGS~-DGtIrVWDl~Tgk~l~ti~~Ht-~~ItsLafSPdg~~LaSGS-~D-----GtIrVWDl~t~~ 1767 (2004)
.++++..+++.++.||. ++.+.+||..+++-...-..+. ..-.+++..++++.++.|+ .+ ..+.+||..+..
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 45677889999999984 4689999988775443222221 1223556667899999998 34 468999987542
Q ss_pred CCCcceEEEEE--ec-CccceeeeEEeCCCcEEEeecC---------CeEEEEECCCCceeEEeeccc--------cCCe
Q psy8748 1768 STGAAKVIREL--LG-YEGFLSSCRFIDDTTLLTGSGD---------MKIVTWNLETGQRIHEVAQAH--------IGDV 1827 (2004)
Q Consensus 1768 ~~~~~k~i~sl--~g-h~~~Vssvafsdd~~LlSgS~D---------GtI~IWDl~tg~~i~~il~~h--------~~~I 1827 (2004)
....... .. ......++...++..++.|+.+ ..+..||..++.......... ...-
T Consensus 326 ----W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 326 ----WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp ----EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred ----ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence 1111000 00 0000001111233334455444 456788988776442221110 1123
Q ss_pred EEEEEC-CCCCEEEEEECCC-----------eEEEEECCCCeEEEEE--ecCCCC-eEEEEEeCCCCEEEEEECC-----
Q psy8748 1828 VSISLS-PDGQYFVTGSVDK-----------SCKLWDFREKKCVQTF--FGHEAD-VNSVCFHPSGLAFATGSED----- 1887 (2004)
Q Consensus 1828 tsLafS-Pdg~~LaSGS~DG-----------sIrIWDlrs~k~I~tl--~~h~s~-ItsIafSPdg~~LaSgS~D----- 1887 (2004)
.++.+. .+++.+++|+.++ .|.+||..+..-.... ..+... -.+.+..|+++.++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 444443 3677888887543 6888888776544332 112222 2355677899999999864
Q ss_pred ------CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1888 ------KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1888 ------GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
..+.+||..+++-...-..........+..+.++|+.++.|+.
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999987654322111222233445667799999999985
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0029 Score=73.18 Aligned_cols=194 Identities=11% Similarity=0.048 Sum_probs=129.7
Q ss_pred ceEEEeeC-CCCceEEEEEecCCCEEEEeecCC--eEEEEEcCCCCCCCcceEEEEEecCcc-ceeeeEEeCCCcEEEee
Q psy8748 1725 NKTQVIPL-RSAWVMSVAFAQSGNFVACGGMDN--MCTVYDLNNRDSTGAAKVIRELLGYEG-FLSSCRFIDDTTLLTGS 1800 (2004)
Q Consensus 1725 k~l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DG--tIrVWDl~t~~~~~~~k~i~sl~gh~~-~Vssvafsdd~~LlSgS 1800 (2004)
+.+.+++. .......+.|+. +.++.+++.+| .|+++|+.+++ ......-... .-..+....+..+...-
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk------v~~~~~l~~~~fgeGi~~~~~~ly~ltw 82 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR------ILQRAEVPPPYFGAGIVAWRDRLIQLTW 82 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC------EEEEEECCTTCCEEEEEEETTEEEEEES
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCC------EEEEEeCCCCcceeEEEEeCCEEEEEEe
Confidence 34455532 235578999986 56666766654 89999998763 3333322222 22344555554555566
Q ss_pred cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCeEEEEEe
Q psy8748 1801 GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE-----ADVNSVCFH 1875 (2004)
Q Consensus 1801 ~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~-----s~ItsIafS 1875 (2004)
.++.+.+||..+.+.+.++..+.. -..++ ++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|.
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~--Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGE--GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSC--CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred eCCEEEEEECCcCcEEEEEeCCCC--ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence 789999999999998877754332 24444 457777777778899999999988877775322 245566665
Q ss_pred CCCCEEEEEECCCeEEEEEccCCceeEEEcCC-----------CCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1876 PSGLAFATGSEDKTARLFDIRADQQIATYLPP-----------NKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1876 Pdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-----------~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
+|..++..-.+..|.+.|.++++.+..+... ......+.++++|+++.|++.+.
T Consensus 159 -~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 159 -NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp -TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred -CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6655544446789999999999998887432 12235688999998777766654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0014 Score=76.53 Aligned_cols=194 Identities=12% Similarity=0.038 Sum_probs=131.5
Q ss_pred ceEEEeeC-CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCC
Q psy8748 1725 NKTQVIPL-RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM 1803 (2004)
Q Consensus 1725 k~l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DG 1803 (2004)
+.+.+++. .......+.|+ ++.++++.+.+|.|+++|+.+++.. .........-..+....+...++.-.++
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~------~~~l~~~~FgeGit~~g~~Ly~ltw~~~ 116 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV------WMERLGNIFAEGLASDGERLYQLTWTEG 116 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS------EEEECTTCCEEEEEECSSCEEEEESSSC
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE------eEECCCCcceeEEEEeCCEEEEEEccCC
Confidence 34445532 23446888987 4677788888899999999887532 2222222222345565555566666789
Q ss_pred eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCeEEEEEeCCC
Q psy8748 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHE-----ADVNSVCFHPSG 1878 (2004)
Q Consensus 1804 tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~-----s~ItsIafSPdg 1878 (2004)
.+.+||..+.+.+.++..... -..++ ++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~~e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG 191 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYSGE--GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG 191 (268)
T ss_dssp EEEEEETTTTEEEEEEECSSC--CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEEECCcCcEEEEEeCCCc--eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC
Confidence 999999999998877754322 23444 467888888778999999999998887775322 234667777 67
Q ss_pred CEEEEEECCCeEEEEEccCCceeEEEcCC-----------CCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1879 LAFATGSEDKTARLFDIRADQQIATYLPP-----------NKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1879 ~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-----------~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
..++....++.|.+.|.++++.+..+... ........++++|+++.|++.+.
T Consensus 192 ~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 192 VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 55544446889999999999998887432 12245688999997665555443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00093 Score=88.92 Aligned_cols=246 Identities=9% Similarity=-0.078 Sum_probs=129.9
Q ss_pred ceeEEEEe-CCCCEEEEEeC-C----CeEEEEECCCC-ceEE-EeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1694 KVNSVHYS-GDSRHCVSGSL-D----GKLIIWDTWTG-NKTQ-VIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1694 ~VtsLaFS-PDG~~LASGS~-D----GtIrVWDl~Tg-k~l~-ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
.+...+|| |||++||-+.. + .+|+++|+.+| +.+. .+. ....++.|+|||+.|+....+..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~-------- 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDET-------- 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTT--------
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCC--------
Confidence 67889999 99998885433 2 25999999998 6321 111 11346789999988877654420
Q ss_pred CCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCcee-EEeec-cccCCeEEEEECCCCCEEEEEE
Q psy8748 1766 RDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRI-HEVAQ-AHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i-~~il~-~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
. ....|+.+++.++... ..+.. ........+.|+|||++|+..+
T Consensus 244 ~----------------------------------~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 244 L----------------------------------RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp C----------------------------------CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred C----------------------------------CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence 0 0013444444433211 01111 1223356789999999888766
Q ss_pred C---CCeEEEEECCCC--eE-EEEE-ecCCCCeEEEEEeCCCCEEEEEECC----CeEEEEEccCCceeEE-EcCCCCCC
Q psy8748 1844 V---DKSCKLWDFREK--KC-VQTF-FGHEADVNSVCFHPSGLAFATGSED----KTARLFDIRADQQIAT-YLPPNKNS 1911 (2004)
Q Consensus 1844 ~---DGsIrIWDlrs~--k~-I~tl-~~h~s~ItsIafSPdg~~LaSgS~D----GtIrIWDLrtgk~i~t-~~~~~~~s 1911 (2004)
. ...|+++|+.++ .. +..+ ........++.|+.++.+++....+ ..|..+|+.++..... +.......
T Consensus 290 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~ 369 (751)
T 2xe4_A 290 QSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDV 369 (751)
T ss_dssp ECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSE
T ss_pred cCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCc
Confidence 3 346888998865 22 1333 2334455666655444444444433 2577777764222122 22222222
Q ss_pred CeEEEEEcCCCCEEEEEeCCCe--EEEEEC-------CCCeeeEEEccC-CCCeEEEEE----cCCCC-EEEEEECC---
Q psy8748 1912 GFTSCAVSSSGRYIFCGSDDNN--VHVWDL-------LKTTHNGVLSGH-ENRVTSISL----SPNGM-ALVTSSWD--- 1973 (2004)
Q Consensus 1912 ~ItsLafSPdG~~LaSGSsDGs--IrIWDL-------~tge~l~tL~gH-s~~VtsLaF----SPDg~-~LaSgS~D--- 1973 (2004)
.+..+.+. .+.++++...+|. |+++|+ ..++....+... ...+..+.+ ++++. ++++.+..
T Consensus 370 ~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P 448 (751)
T 2xe4_A 370 FMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATP 448 (751)
T ss_dssp EEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEE
T ss_pred EEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCC
Confidence 34455554 3344556666775 556665 333313333211 122334433 33554 44444432
Q ss_pred CeEEEEECCCCe
Q psy8748 1974 QFVKVWQESNTI 1985 (2004)
Q Consensus 1974 GtIrIWdlstg~ 1985 (2004)
+.+..+++.+++
T Consensus 449 ~~~~~~d~~~~~ 460 (751)
T 2xe4_A 449 NTWFDVSPQDHS 460 (751)
T ss_dssp EEEEEECTTTCC
T ss_pred CEEEEEECCCCc
Confidence 467777877765
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0097 Score=71.87 Aligned_cols=257 Identities=8% Similarity=-0.041 Sum_probs=153.5
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEE-EeecCCeEEEEEcCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVA-CGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~La-SGS~DGtIrVWDl~t~~~~ 1769 (2004)
+.+..+|.+..++ .+|+.+. ...|+..++........... ...+..++|++.+..|+ +-...+.|..++.+...
T Consensus 32 ~~d~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-- 106 (349)
T 3v64_C 32 RPDRRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-- 106 (349)
T ss_dssp CTTSSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--
T ss_pred CCCCCcccccccC-ceeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCC--
Confidence 3445567776664 3444443 35688888766555444443 34578999997655554 44567889889886532
Q ss_pred CcceEEEEEecCccceeeeEEeC-CCc-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC-C-
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFID-DTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV-D- 1845 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafsd-d~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~-D- 1845 (2004)
... ...........+++.. ++. +++-...+.|.+.+.+..... .+..........++++|.+..++.... .
T Consensus 107 --~~~--~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~l~~P~~iavdp~~g~ly~td~~~~ 181 (349)
T 3v64_C 107 --VEE--VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNT 181 (349)
T ss_dssp --CEE--EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECTTCSCEEEEEEETTTTEEEEEECSSS
T ss_pred --ceE--EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-EEEeCCCCCcceEEEecCcCeEEEeccCCC
Confidence 111 1111223345566652 344 455556788999998755433 333334456789999997666665543 3
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE
Q psy8748 1846 KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1846 GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~ 1924 (2004)
+.|..+++............-...+.++++|++..|+.+. ..+.|..+|+.......... . .......+++ ..+..
T Consensus 182 ~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~-~-~~~~P~giav-~~~~l 258 (349)
T 3v64_C 182 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-Q-GLPHPFAITV-FEDSL 258 (349)
T ss_dssp CEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-S-SCSSEEEEEE-ETTEE
T ss_pred CEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe-C-CCCCceEEEE-ECCEE
Confidence 6788888764432222222334578999998666665554 46789999987543332221 1 1244567777 34555
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEE
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF 1960 (2004)
+++-...+.|..++..+|+....+........++++
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 555556788999997777766666543334444444
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.83 E-value=0.013 Score=72.15 Aligned_cols=249 Identities=8% Similarity=-0.058 Sum_probs=152.0
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEe-ecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACG-GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSG-S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
+|+.+. ...|+..++........+. ....+..++|++.+..|+.+ ...+.|..++++..... .............
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~--~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--SSYDTVISRDIQA 160 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------CCCEEEECSSCSC
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC--CcceEEEeCCCCC
Confidence 444443 4688888987765555444 44568899999866555444 45688888888642110 0111122223334
Q ss_pred eeeeEEeC--CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC--CCeEEEEECCCCeEEE
Q psy8748 1785 LSSCRFID--DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV--DKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1785 Vssvafsd--d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~--DGsIrIWDlrs~k~I~ 1860 (2004)
...+++.. +..+++-...+.|.+.+++..... .+..........++++|.+..|+.... .+.|...++.......
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~-~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE-EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCceE-EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence 55666653 334555556788999998765443 333334456789999997777766653 3689999886544333
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1861 TFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
.....-.....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+.|..+|.
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEES
T ss_pred EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEc
Confidence 3333335788999998777766654 4678999998754433333222222345566663 3444555556788999998
Q ss_pred CCCeeeEEEccCCCCeEEEEE
Q psy8748 1940 LKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1940 ~tge~l~tL~gHs~~VtsLaF 1960 (2004)
.+|+....+........++.+
T Consensus 319 ~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 319 LTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp SSCCCCEEEECSCSCEEEEEE
T ss_pred CCCCceEEEecCCCCCceEEE
Confidence 888877777655555666654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.018 Score=70.39 Aligned_cols=255 Identities=9% Similarity=-0.036 Sum_probs=154.7
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEE-EEeecCCeEEEEEcCCCCCCCc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFV-ACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~L-aSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
+.-+|.+..+ ..+|+.+. ...|+.+++..+........ ...+..++|++.+..| ++-...+.|..++.+...
T Consensus 77 d~~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~---- 149 (386)
T 3v65_B 77 DRRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---- 149 (386)
T ss_dssp TSSCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC----
T ss_pred CCCeECCccc-cceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC----
Confidence 3445666555 34444443 35788888876655544443 3457899999765544 454567889889886532
Q ss_pred ceEEEEEecCccceeeeEEeC-CCc-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC-C-Ce
Q psy8748 1772 AKVIRELLGYEGFLSSCRFID-DTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV-D-KS 1847 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsd-d~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~-D-Gs 1847 (2004)
..............+++.. ++. +++-...+.|.+.+++..... .+..........++++|.+..++.+.. . +.
T Consensus 150 --~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~P~giavdp~~g~ly~td~~~~~~ 226 (386)
T 3v65_B 150 --VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 226 (386)
T ss_dssp --EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred --cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE-EeecCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence 1111122222344556552 334 455556778888888754433 333334456789999997776666553 3 67
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEE
Q psy8748 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATG-SEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIF 1926 (2004)
Q Consensus 1848 IrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSg-S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~La 1926 (2004)
|..++.............-...+.++++|++..|+.+ +..+.|..+|+......... ... ......+++ ..+..++
T Consensus 227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-~~~-~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI-SQG-LPHPFAITV-FEDSLYW 303 (386)
T ss_dssp EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE-CSS-CSSEEEEEE-ETTEEEE
T ss_pred EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE-ECC-CCCceEEEE-ECCEEEE
Confidence 8888876543333333334457899999866665555 45678999998744333222 212 244567777 3455555
Q ss_pred EEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEE
Q psy8748 1927 CGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1927 SGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF 1960 (2004)
+-...+.|..+|..+++....+........++++
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 6566788999997778777776544444555555
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0063 Score=70.88 Aligned_cols=203 Identities=11% Similarity=0.148 Sum_probs=133.3
Q ss_pred EEecCccceeeeEEeCC-CcE-EEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECC
Q psy8748 1777 ELLGYEGFLSSCRFIDD-TTL-LTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFR 1854 (2004)
Q Consensus 1777 sl~gh~~~Vssvafsdd-~~L-lSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlr 1854 (2004)
.+.+-...+..+++.++ +.+ ++...++.|...|.. ++....+..........+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 45566677999999853 444 457778999999998 777766644444678899999888766665567889999876
Q ss_pred CCeE---EEEEe------cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC---CceeEEEc-----CCCCCCCeEEEE
Q psy8748 1855 EKKC---VQTFF------GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA---DQQIATYL-----PPNKNSGFTSCA 1917 (2004)
Q Consensus 1855 s~k~---I~tl~------~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt---gk~i~t~~-----~~~~~s~ItsLa 1917 (2004)
.... +.... ..+....+++|+|.++.|+++...+...+|.++. ...+.... .......+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5432 22221 1234568999999998888877666556665541 11112110 111234578899
Q ss_pred EcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEccCC---------CCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1918 VSSS-GRYIFCGSDDNNVHVWDLLKTTHNGVLSGHE---------NRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1918 fSPd-G~~LaSGSsDGsIrIWDL~tge~l~tL~gHs---------~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
++|. |++++.......+.++|. +|+.+..+.-.. ..-.+|+|.++|+. +..++.+.++.|.-.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC-
T ss_pred EcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEEec
Confidence 9995 455566666788999996 466665553221 25689999999984 444777766666543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.02 Score=69.10 Aligned_cols=232 Identities=8% Similarity=-0.026 Sum_probs=140.0
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEEE-eecCCeEEEEECCCCceeEEeeccccC
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLLT-GSGDMKIVTWNLETGQRIHEVAQAHIG 1825 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~LlS-gS~DGtI~IWDl~tg~~i~~il~~h~~ 1825 (2004)
+|+.+. .+.|+..+++... .............++|. .++.++. -...+.|..+++..+... .+......
T Consensus 46 ~ll~~~-~~~I~~i~~~g~~-------~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~~~~~~ 116 (349)
T 3v64_C 46 VLLFAN-RIDIRQVLPHRSE-------YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVVSTGLE 116 (349)
T ss_dssp EEEEEC-BSCEEEECTTSCC-------EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCS
T ss_pred eeEeec-ccceEEEeCCCCe-------eEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCce-EEEeCCCC
Confidence 444333 3447776665321 12222233446778887 4455544 446788999998876543 23223334
Q ss_pred CeEEEEECCCCCEEEEE-ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CC-CeEEEEEccCCceeE
Q psy8748 1826 DVVSISLSPDGQYFVTG-SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS-ED-KTARLFDIRADQQIA 1902 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSG-S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS-~D-GtIrIWDLrtgk~i~ 1902 (2004)
....+++++.+..|+.+ ...+.|.+.++........+...-.....++++|.+..++... .+ +.|..+++... ...
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~ 195 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRR 195 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcE
Confidence 56789998865555444 4567899999875543333333445678999999655555443 44 78988887643 333
Q ss_pred EEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
.+. .........+++++++..|+.+.. .+.|..+|+........+........++++. .+...++-...+.|..++.
T Consensus 196 ~~~-~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~ 273 (349)
T 3v64_C 196 IIA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANK 273 (349)
T ss_dssp ESC-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EEE-ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEc
Confidence 332 222345689999987777766654 6789999986543333344445567888883 4455555556788888886
Q ss_pred CCCeEEEEEE
Q psy8748 1982 SNTIVWKVLK 1991 (2004)
Q Consensus 1982 stg~l~k~Ik 1991 (2004)
.+|+..+.+.
T Consensus 274 ~~G~~~~~i~ 283 (349)
T 3v64_C 274 FTGKNQEIIR 283 (349)
T ss_dssp TTCCSCEEEE
T ss_pred cCCCccEEec
Confidence 5554444443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.067 Score=66.30 Aligned_cols=260 Identities=10% Similarity=0.138 Sum_probs=173.4
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.+..|.|.|+.++......+...+ +.-.+|..+.++.-. ...+.++|++.. ...+...-. ..|.--.|.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~Ad---sAIMnP~~~iiALra-g~~lQiFnle~K------~klks~~~~-e~VvfWkWi 114 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMK------SKMKAHTMT-DDVTFWKWI 114 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCCS---EEEECSSSSCEEEEE-TTEEEEEETTTT------EEEEEEECS-SCCCEEEEE
T ss_pred CCCeEEEEECCCCCcceecccccc---eeeeCCCCcEEEEec-CCeEEEEchHHh------hhhcceecC-CCceEEEec
Confidence 345799999988766544332222 345678777776654 688999999864 233333333 345556666
Q ss_pred CCCcEEEeecCCeEEEEECCCCceeEEeeccc----cCCeEEEEECCCCCEEEEEEC-------CCeEEEEECCCCeEEE
Q psy8748 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAH----IGDVVSISLSPDGQYFVTGSV-------DKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1792 dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h----~~~ItsLafSPdg~~LaSGS~-------DGsIrIWDlrs~k~I~ 1860 (2004)
+.+.+...+ +..|+.|++.......+++..| ...|..-..+++.++++..|- .|.+.+|..+.+. -+
T Consensus 115 s~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ 192 (494)
T 1bpo_A 115 SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQ 192 (494)
T ss_dssp ETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EE
T ss_pred CCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cc
Confidence 666655554 4579999998655555555444 346788888999998876542 3678999987554 45
Q ss_pred EEecCCCCeEEEEEeCCC---CEEEEEEC---CCeEEEEEccCC--------ceeEEE--cCCCCCCCeEEEEEcCCCCE
Q psy8748 1861 TFFGHEADVNSVCFHPSG---LAFATGSE---DKTARLFDIRAD--------QQIATY--LPPNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg---~~LaSgS~---DGtIrIWDLrtg--------k~i~t~--~~~~~~s~ItsLafSPdG~~ 1924 (2004)
.+.+|......+....+. ..++.+.. .++++|.++... +..... .......--.++.+++.-..
T Consensus 193 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv 272 (494)
T 1bpo_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (494)
T ss_dssp EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE
T ss_pred hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE
Confidence 667776555444332211 23444444 378999998543 111111 11122344568899999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
++.-+.-|.|++||+.++.++..-+-....|..-+-+....-++.....|.|.--.+++.
T Consensus 273 iyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 273 VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 999999999999999999999888777778877777776667777788888877766654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.05 Score=64.52 Aligned_cols=232 Identities=7% Similarity=-0.027 Sum_probs=139.4
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEE-EeecCCeEEEEECCC---CceeEEeecc
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLL-TGSGDMKIVTWNLET---GQRIHEVAQA 1822 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~Ll-SgS~DGtI~IWDl~t---g~~i~~il~~ 1822 (2004)
+|+.+.. +.|+..+++... ... ..........+.|.. ++.++ +-..++.|..+++.. +.....+...
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~------~~~-~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSE------YTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp EEEEECB-SSEEEEETTSCC------CEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred EEEEECC-CeEEEEECCCcc------eEe-hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC
Confidence 3444443 458888887542 111 122334567788874 44444 445568999999876 1222223322
Q ss_pred ccCCeEEEEECCCCCEEEEE-ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC--CeEEEEEccCCc
Q psy8748 1823 HIGDVVSISLSPDGQYFVTG-SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED--KTARLFDIRADQ 1899 (2004)
Q Consensus 1823 h~~~ItsLafSPdg~~LaSG-S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D--GtIrIWDLrtgk 1899 (2004)
.......+++++.+..++.+ ...+.|.++|.........+.........++++|.+..++.+..+ +.|..+++. +.
T Consensus 75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~ 153 (316)
T 1ijq_A 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GV 153 (316)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SC
T ss_pred CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CC
Confidence 33456789998755555544 567899999987554333333344577899999966665555443 688888876 33
Q ss_pred eeEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEE-c--cCCCCeEEEEEcCCCCEEEEEECCCe
Q psy8748 1900 QIATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVL-S--GHENRVTSISLSPNGMALVTSSWDQF 1975 (2004)
Q Consensus 1900 ~i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL-~--gHs~~VtsLaFSPDg~~LaSgS~DGt 1975 (2004)
....+.. ........+++++++..|+.++ ..+.|..+|+... ....+ . ..-....++++. .+.++++-...+.
T Consensus 154 ~~~~~~~-~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~ 230 (316)
T 1ijq_A 154 DIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 230 (316)
T ss_dssp CEEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred CeEEEEE-CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCe
Confidence 3333322 1234578999999877776665 4578999998643 23333 2 123456788885 3555555556788
Q ss_pred EEEEECCCCeEEEEEE
Q psy8748 1976 VKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1976 IrIWdlstg~l~k~Ik 1991 (2004)
|..++..+++..+.+.
T Consensus 231 V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 231 IFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTCCCCEEEE
T ss_pred EEEEeCCCCcceEEEe
Confidence 9999987665444443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.021 Score=71.23 Aligned_cols=239 Identities=13% Similarity=0.059 Sum_probs=140.6
Q ss_pred cceeEEEEeCC--CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC---C-eEEEEEcCCC
Q psy8748 1693 NKVNSVHYSGD--SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD---N-MCTVYDLNNR 1766 (2004)
Q Consensus 1693 ~~VtsLaFSPD--G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D---G-tIrVWDl~t~ 1766 (2004)
.....++|+|+ +..|+.+...+.|+.+|..++...... .......+++|+++|+++++.... . .+...+....
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 34678999985 445555544489999998877665543 344568999999999944443311 1 1333332211
Q ss_pred CCCCcceEEEEEecCccceeeeEEeC-CCcEEEee-cCCeEEEEECCCCceeEEeec-cccCCeEEEEECCCCCEEEEEE
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGS-GDMKIVTWNLETGQRIHEVAQ-AHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSgS-~DGtI~IWDl~tg~~i~~il~-~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
........ .......+++.+ ++.++++. .++.|+.+|..++.....+.. +....-..++|+|++++|+++.
T Consensus 218 -----~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 218 -----FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp -----TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred -----eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 11001111 123345566665 56666554 568899999987765323321 2222345799999999666665
Q ss_pred -CCCeEEEEECC--CCeE--EEEEecC---------------CCCeEEEEE---------eCCCCEEEEEECCCeEEEEE
Q psy8748 1844 -VDKSCKLWDFR--EKKC--VQTFFGH---------------EADVNSVCF---------HPSGLAFATGSEDKTARLFD 1894 (2004)
Q Consensus 1844 -~DGsIrIWDlr--s~k~--I~tl~~h---------------~s~ItsIaf---------SPdg~~LaSgS~DGtIrIWD 1894 (2004)
..+.|+.++.. ++.. ...+.+. -.....+++ .++|.++++-...+.|+.++
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 45789998865 2221 1122111 123567899 67777676666778899998
Q ss_pred ccCCceeEEEcCCCC----------------CCCeEEEEEc-CCCCEEEEEeCCCeEEEEECC
Q psy8748 1895 IRADQQIATYLPPNK----------------NSGFTSCAVS-SSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1895 Lrtgk~i~t~~~~~~----------------~s~ItsLafS-PdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
. ++.. .++..... -.....++++ ++|.++++=..++.|+.++++
T Consensus 372 ~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 372 P-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp T-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred C-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 5 4533 33321110 1236788999 566555555556788887753
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.013 Score=72.80 Aligned_cols=240 Identities=9% Similarity=0.023 Sum_probs=139.2
Q ss_pred cceeEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC-C----eEEEEEcCCC
Q psy8748 1693 NKVNSVHYSG-DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD-N----MCTVYDLNNR 1766 (2004)
Q Consensus 1693 ~~VtsLaFSP-DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D-G----tIrVWDl~t~ 1766 (2004)
.....++|+| ++..|+.+...+.|+.+|..++....... .......++|+++++.|+++... + .+.+++.. +
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 3567899998 46666666655889999987765544333 45568899999999966666542 1 23334432 2
Q ss_pred CCCCcceEEEEEecCccceeeeEEeC-CCcEEEe-ecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTG-SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS- 1843 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSg-S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS- 1843 (2004)
.. .....+. .......+++.+ ++.++++ ..++.|..++...+................++|+|+|++++++.
T Consensus 215 ~~----~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 215 GF----KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp TS----CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred ce----eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 11 1011111 123345666766 5565554 46789999999876542222222234577899999999666554
Q ss_pred CCCeEEEEECCC--CeE--EEEEecC---------------CCCeE-EEEEe--------CCCCEEEEEECCCeEEEEEc
Q psy8748 1844 VDKSCKLWDFRE--KKC--VQTFFGH---------------EADVN-SVCFH--------PSGLAFATGSEDKTARLFDI 1895 (2004)
Q Consensus 1844 ~DGsIrIWDlrs--~k~--I~tl~~h---------------~s~It-sIafS--------Pdg~~LaSgS~DGtIrIWDL 1895 (2004)
..+.|..++... +.. ...+.+. -.... .++.. ++|.++++-...+.|+.++.
T Consensus 290 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~ 369 (430)
T 3tc9_A 290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP 369 (430)
T ss_dssp TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT
T ss_pred CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC
Confidence 567899987653 221 1222111 01122 45553 34555555556678888883
Q ss_pred cCCceeEEEcC-----CC----------CCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q psy8748 1896 RADQQIATYLP-----PN----------KNSGFTSCAVSSS-GRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1896 rtgk~i~t~~~-----~~----------~~s~ItsLafSPd-G~~LaSGSsDGsIrIWDL~ 1940 (2004)
++........ .+ .-.....++++++ |.++++-..++.|+.++.+
T Consensus 370 -~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 370 -QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 4543333211 00 0124678999995 5555554456788887753
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.018 Score=70.40 Aligned_cols=232 Identities=8% Similarity=-0.019 Sum_probs=141.3
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEE-EeecCCeEEEEECCCCceeEEeeccccC
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIG 1825 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~Ll-SgS~DGtI~IWDl~tg~~i~~il~~h~~ 1825 (2004)
+|+.+. ...|+.+++.... . ..+.........++|. .++.++ +-...+.|..++...+... .+......
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~----~---~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~~~~~~ 159 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSE----Y---TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVVSTGLE 159 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCC----C---EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-EEECSSCS
T ss_pred eeEeec-CccceeeccCCCc----E---EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-EEEeCCCC
Confidence 444443 3457777775432 1 1222233456778887 345544 4456788999998866543 33233334
Q ss_pred CeEEEEECCCCCEEEEE-ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CC-CeEEEEEccCCceeE
Q psy8748 1826 DVVSISLSPDGQYFVTG-SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS-ED-KTARLFDIRADQQIA 1902 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSG-S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS-~D-GtIrIWDLrtgk~i~ 1902 (2004)
....+++++.+..|+.. ...+.|.++++........+...-.....+++.|.+..++.+. .+ +.|..+++......
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~- 238 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR- 238 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-
Confidence 55778898765555544 4567899888865443333333345678999998766655544 34 67888888644333
Q ss_pred EEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
.+.. ........++++|++..|+.+. ..+.|..+|+........+........++++ ..+.++++-...+.|..++.
T Consensus 239 ~~~~-~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 239 IIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EEEC-SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEET
T ss_pred EEEE-CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEEC
Confidence 3321 2234568899998777666655 4678999998644433334444556788888 34455556566788999986
Q ss_pred CCCeEEEEEE
Q psy8748 1982 SNTIVWKVLK 1991 (2004)
Q Consensus 1982 stg~l~k~Ik 1991 (2004)
.+|+..+.+.
T Consensus 317 ~~G~~~~~i~ 326 (386)
T 3v65_B 317 FTGKNQEIIR 326 (386)
T ss_dssp TTCCSCEEEE
T ss_pred CCCcceEEEc
Confidence 5555444444
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.60 E-value=0.027 Score=67.26 Aligned_cols=229 Identities=9% Similarity=0.030 Sum_probs=139.0
Q ss_pred CCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCc-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEE
Q psy8748 1755 DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1755 DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf 1832 (2004)
...|+.++++.... ..... . ........+.|.. ++. +++-...+.|..++...+................+++
T Consensus 12 ~~~I~~i~l~~~~~--~~~~~--~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glav 86 (318)
T 3sov_A 12 RRDLRLVDATNGKE--NATIV--V-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 86 (318)
T ss_dssp EEEEEEEETTCTTS--CCEEE--E-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEE
T ss_pred cCeEEEEECCCCce--EEEEE--e-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEE
Confidence 46688888875421 11111 1 1122455677763 344 4455567889999987664322222233345678999
Q ss_pred CCCCCEEE-EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEEccCCceeEEEcCCCC
Q psy8748 1833 SPDGQYFV-TGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE--DKTARLFDIRADQQIATYLPPNK 1909 (2004)
Q Consensus 1833 SPdg~~La-SGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~--DGtIrIWDLrtgk~i~t~~~~~~ 1909 (2004)
.+.+..|+ +-...+.|.+++...................+++.|.+..++.+.. .+.|..+++... ....+.. ..
T Consensus 87 d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~-~~ 164 (318)
T 3sov_A 87 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIIN-SE 164 (318)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEEC-SS
T ss_pred EcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEE-CC
Confidence 87555454 4445678999998754433333344456789999997666665552 578888887643 3333321 12
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWK 1988 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k 1988 (2004)
......+++++++..|+.++ ..+.|..+|+..........+......++++.. +.++++-...+.|..++..+|+..+
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceE
Confidence 24568999999777776665 467899999864333333333455677888853 3445555567889999987765545
Q ss_pred EEE
Q psy8748 1989 VLK 1991 (2004)
Q Consensus 1989 ~Ik 1991 (2004)
.+.
T Consensus 244 ~i~ 246 (318)
T 3sov_A 244 EIH 246 (318)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.54 E-value=0.04 Score=65.82 Aligned_cols=238 Identities=9% Similarity=-0.025 Sum_probs=142.3
Q ss_pred CCeEEEEECCCCc--eEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeE
Q psy8748 1713 DGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCR 1789 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssva 1789 (2004)
...|+.+++.... ....+. ....+.+++|++.+. .+++-...+.|..++.+.... ..... ...-.....++
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~--~~~~~---~~~l~~p~gla 85 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--VQNVV---VSGLLSPDGLA 85 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC--CCEEE---EECCSCCCEEE
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc--eEEEE---cCCCCCccEEE
Confidence 4678899987663 222222 223467899998654 555555678899998865421 01111 11122344566
Q ss_pred Ee-CCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC--CCeEEEEECCCCeEEEEEecC
Q psy8748 1790 FI-DDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV--DKSCKLWDFREKKCVQTFFGH 1865 (2004)
Q Consensus 1790 fs-dd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~--DGsIrIWDlrs~k~I~tl~~h 1865 (2004)
+. .++ .+++-...+.|.+++.+..... .+..........++++|.+..++.+.. .+.|..+++............
T Consensus 86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~ 164 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 164 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred EEcCCCeEEEEECCCCEEEEEECCCCcEE-EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC
Confidence 65 233 4455556788999998754432 333344456789999997777766653 578888887643322222233
Q ss_pred CCCeEEEEEeCCCCEEEEE-ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q psy8748 1866 EADVNSVCFHPSGLAFATG-SEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTH 1944 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSg-S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~ 1944 (2004)
-...+.+++++++..|+.+ +..+.|..+|+..... ..+.. ........+++.. +..+.+-...+.|..++..+++.
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 3457899999966666555 4567899999874333 33322 2234456777753 34455555678999999888877
Q ss_pred eEEEccCCCCeEEEEE
Q psy8748 1945 NGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1945 l~tL~gHs~~VtsLaF 1960 (2004)
...+........+++.
T Consensus 242 ~~~i~~~~~~P~~i~v 257 (318)
T 3sov_A 242 LREIHSDIFSPMDIHA 257 (318)
T ss_dssp CEEEECCCSSCCCEEE
T ss_pred eEEEeCCCCCCcEEEE
Confidence 6666543334444444
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.017 Score=67.19 Aligned_cols=203 Identities=14% Similarity=0.187 Sum_probs=130.5
Q ss_pred cccccccceeEEEEeCCCCEEE-EEeCCCeEEEEECCCCceEEEeeCC-CCceEEEEEecCCCEEEEeecCCeEEEEEcC
Q psy8748 1687 SLKGHINKVNSVHYSGDSRHCV-SGSLDGKLIIWDTWTGNKTQVIPLR-SAWVMSVAFAQSGNFVACGGMDNMCTVYDLN 1764 (2004)
Q Consensus 1687 sL~GHt~~VtsLaFSPDG~~LA-SGS~DGtIrVWDl~Tgk~l~ti~~H-t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~ 1764 (2004)
.+.|-.+.+..++|+|+++.|+ +...++.|...|.. |+.++.+... ......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999776554 56778899999987 8888887532 2457889999888877776677889999987
Q ss_pred CCCCCCcceEEEEEe------cCccceeeeEEeCCC-cEEEeecCCeEEEEECC---CCceeEEee------ccccCCeE
Q psy8748 1765 NRDSTGAAKVIRELL------GYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLE---TGQRIHEVA------QAHIGDVV 1828 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~------gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~---tg~~i~~il------~~h~~~It 1828 (2004)
.... ........ ........++|.+.+ .++++.......+|.++ ....+.... ..+...+.
T Consensus 100 ~~~~---i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 100 PNSE---VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp TTCC---EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred CCCe---eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 6431 11111111 223446789998654 66666665444444433 111111110 11334678
Q ss_pred EEEECCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCC---------CCeEEEEEeCCCCEEEEEECCCeEEEEEc
Q psy8748 1829 SISLSPDGQ-YFVTGSVDKSCKLWDFREKKCVQTFFGHE---------ADVNSVCFHPSGLAFATGSEDKTARLFDI 1895 (2004)
Q Consensus 1829 sLafSPdg~-~LaSGS~DGsIrIWDlrs~k~I~tl~~h~---------s~ItsIafSPdg~~LaSgS~DGtIrIWDL 1895 (2004)
+++++|... +++.....+.+.++|.. ++.+..+.-.. .....|+|.++|+.++ .++.+.++.|.-
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~~ 251 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFTP 251 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEEC
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEEe
Confidence 999999655 55555566789999965 55555543221 2568999999998544 467776666653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.037 Score=74.11 Aligned_cols=237 Identities=9% Similarity=-0.057 Sum_probs=142.3
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
+|+.+ ....|+..++........+. ....+.+++|++.+. ++++-...+.|+.++++...... .....+......
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~--~~~~vi~~~l~~ 472 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--SYDTVISRDIQA 472 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------CEEEECSSCSC
T ss_pred ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc--ceeEEEecCCCC
Confidence 34433 34568888887665544444 345678999998554 45555566889888886432100 111222223334
Q ss_pred eeeeEEe--CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC--CCeEEEEECCCCeEEE
Q psy8748 1785 LSSCRFI--DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV--DKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1785 Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~--DGsIrIWDlrs~k~I~ 1860 (2004)
...+++. .+..+++-...+.|.+.++...... .+..........|+++|.+.+|+.+.. .+.|...++.......
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~ 551 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 551 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEE-EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence 4556665 3344556667789999998755433 343344456889999998777766653 2679999987554433
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEE
Q psy8748 1861 TFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWD 1938 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWD 1938 (2004)
.+...-.....|++++.+..|+.+. ..+.|..+++....................+++. +.+|+... ..+.|...|
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEe
Confidence 3333345788999998766666554 4568999998754443333222222334566663 34555444 568899999
Q ss_pred CCCCeeeEEEc
Q psy8748 1939 LLKTTHNGVLS 1949 (2004)
Q Consensus 1939 L~tge~l~tL~ 1949 (2004)
..+++.+..+.
T Consensus 630 k~tG~~~~~l~ 640 (791)
T 3m0c_C 630 RLTGSDVNLLA 640 (791)
T ss_dssp TTTCCCCEEEE
T ss_pred CCCCcceEEee
Confidence 87877666654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.013 Score=72.85 Aligned_cols=238 Identities=9% Similarity=0.071 Sum_probs=136.9
Q ss_pred ceEEEEEec-CCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEeecC-----CeEEEE
Q psy8748 1736 WVMSVAFAQ-SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGSGD-----MKIVTW 1808 (2004)
Q Consensus 1736 ~ItsLafSP-dg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~D-----GtI~IW 1808 (2004)
....++|+| ++..|+++...+.|+.+|.+... +..+.........+++..++. ++++... ..+..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence 457889998 46666666655888889886531 222333445567788876554 6665542 134444
Q ss_pred ECCCCceeEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEE-E
Q psy8748 1809 NLETGQRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHPSGLAFATG-S 1885 (2004)
Q Consensus 1809 Dl~tg~~i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl~-~h~s~ItsIafSPdg~~LaSg-S 1885 (2004)
+............ .......++++| ++..+++-..++.|..|+...+....... ........++|+|+|++++.+ .
T Consensus 211 ~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 211 TRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp EGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred eCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 4332211111111 233457788999 66655555567899999998766422222 222457899999999955554 4
Q ss_pred CCCeEEEEEccCC--ce--eEEEcCC-C---C---------CCCeE-EEEEc--------CCCCEEEEEeCCCeEEEEEC
Q psy8748 1886 EDKTARLFDIRAD--QQ--IATYLPP-N---K---------NSGFT-SCAVS--------SSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1886 ~DGtIrIWDLrtg--k~--i~t~~~~-~---~---------~s~It-sLafS--------PdG~~LaSGSsDGsIrIWDL 1939 (2004)
..+.|..++.... .. ...+... . . -.... .+++. ++|+++++-..++.|+.++
T Consensus 290 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~- 368 (430)
T 3tc9_A 290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT- 368 (430)
T ss_dssp TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-
T ss_pred CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-
Confidence 5778999887632 11 1122110 0 0 01122 45553 3466555555678899988
Q ss_pred CCCeeeEEEcc----C-------------CCCeEEEEEcCC-CCEEEEEECCCeEEEEECC
Q psy8748 1940 LKTTHNGVLSG----H-------------ENRVTSISLSPN-GMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1940 ~tge~l~tL~g----H-------------s~~VtsLaFSPD-g~~LaSgS~DGtIrIWdls 1982 (2004)
.++........ . -.....++++++ +.++++-...+.|+.++++
T Consensus 369 ~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 369 PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 45654433311 0 114789999984 5555555556778877654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.49 E-value=0.28 Score=68.39 Aligned_cols=269 Identities=13% Similarity=0.117 Sum_probs=139.8
Q ss_pred CCEEEEEeCCCeEEEE--ECCCCceEEE--eeCCCCceEEEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEE
Q psy8748 1704 SRHCVSGSLDGKLIIW--DTWTGNKTQV--IPLRSAWVMSVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIREL 1778 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVW--Dl~Tgk~l~t--i~~Ht~~ItsLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl 1778 (2004)
..+|..|-.||.+.-+ |..+|..... ......++.=..+...+. .+++++ +....+|.-+. .....-
T Consensus 617 ~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~-------~l~~s~ 688 (1158)
T 3ei3_A 617 SHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNH-------KLVFSN 688 (1158)
T ss_dssp EEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESSS-------SEEEEE
T ss_pred CcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcCC-------ceEEec
Confidence 3578888889987555 4445544332 222334554444444443 333333 44444443321 111111
Q ss_pred ecCccceeeeEEeCCC---cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC----------
Q psy8748 1779 LGYEGFLSSCRFIDDT---TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD---------- 1845 (2004)
Q Consensus 1779 ~gh~~~Vssvafsdd~---~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D---------- 1845 (2004)
.........+.|+... -++ +..++.+++..+..-+......-.-...+..++++|+.+.++++..+
T Consensus 689 l~~~~v~~~~~F~se~~~~g~v-~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~ 767 (1158)
T 3ei3_A 689 VNLKEVNYMCPLNSDGYPDSLA-LANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 767 (1158)
T ss_dssp BSSSCCCEEEEECCSSSTTEEE-EECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSE
T ss_pred cChHHhceEeccCcccCCCcEE-EEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEecccccccccc
Confidence 1112222334444322 233 33345688887754433322222344567888888877765554311
Q ss_pred ---------------------------------------CeEEEEECCCCeEEEEEec-CCCCeEEEEEeC----CCCEE
Q psy8748 1846 ---------------------------------------KSCKLWDFREKKCVQTFFG-HEADVNSVCFHP----SGLAF 1881 (2004)
Q Consensus 1846 ---------------------------------------GsIrIWDlrs~k~I~tl~~-h~s~ItsIafSP----dg~~L 1881 (2004)
+.|+++|..+++.+..+.- ....+.+++... ...++
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~l 847 (1158)
T 3ei3_A 768 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYF 847 (1158)
T ss_dssp EESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEE
T ss_pred chhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEE
Confidence 2366777777766555432 233455555432 24688
Q ss_pred EEEE----------CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC
Q psy8748 1882 ATGS----------EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH 1951 (2004)
Q Consensus 1882 aSgS----------~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH 1951 (2004)
++|+ ..|.|.+|++..++. .........+++++++-- +| +|++|- ...|++|++...+.+..-..+
T Consensus 848 vVGTa~~~~~e~~~~~Gri~vf~v~~~kL-~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~ 923 (1158)
T 3ei3_A 848 IVGTAMVYPEEAEPKQGRIVVFQYSDGKL-QTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNH 923 (1158)
T ss_dssp EEEEEECCTTCSSCCCEEEEEEEEETTEE-EEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEE
T ss_pred EEEeeecCCCCCCCCceEEEEEEEECCEE-EEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeec
Confidence 8887 358899999974433 222222334667776543 45 555553 578999999765533311111
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEE--CCCCe
Q psy8748 1952 ENRVTSISLSPNGMALVTSSWDQFVKVWQ--ESNTI 1985 (2004)
Q Consensus 1952 s~~VtsLaFSPDg~~LaSgS~DGtIrIWd--lstg~ 1985 (2004)
-..|..+.....+++++.|..-..|.++. ...++
T Consensus 924 ~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~ 959 (1158)
T 3ei3_A 924 YNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN 959 (1158)
T ss_dssp CCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTE
T ss_pred cccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCe
Confidence 12233333333577889888777777654 44443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.011 Score=73.72 Aligned_cols=237 Identities=12% Similarity=0.075 Sum_probs=138.5
Q ss_pred ceEEEEEecC--CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCC-----eEEEE
Q psy8748 1736 WVMSVAFAQS--GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM-----KIVTW 1808 (2004)
Q Consensus 1736 ~ItsLafSPd--g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DG-----tI~IW 1808 (2004)
....++|+|+ +..|+.+...+.|+.++..++. +..+.........+++.+++.++++...+ .+..+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~-------v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY-------VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE-------EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE-------EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEE
Confidence 4568999984 4455555544889999885432 22333344557788888666566665422 23334
Q ss_pred ECCCCceeEEeeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEEec--CCCCeEEEEEeCCCCEEEEEE
Q psy8748 1809 NLETGQRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTFFG--HEADVNSVCFHPSGLAFATGS 1885 (2004)
Q Consensus 1809 Dl~tg~~i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl~~--h~s~ItsIafSPdg~~LaSgS 1885 (2004)
+...+....... ........++++| +|.++++-..++.|+.+|..++.....+.. .......++|+|++++|+.+.
T Consensus 213 ~~~~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 213 TRASGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp CGGGTTCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred ECCCCeeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 433222110111 1234456788999 666555555678899999887765233221 122335799999999655554
Q ss_pred -CCCeEEEEEccC--Cce--eEEEcCC-C------------CCCCeEEEEE---------cCCCCEEEEEeCCCeEEEEE
Q psy8748 1886 -EDKTARLFDIRA--DQQ--IATYLPP-N------------KNSGFTSCAV---------SSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1886 -~DGtIrIWDLrt--gk~--i~t~~~~-~------------~~s~ItsLaf---------SPdG~~LaSGSsDGsIrIWD 1938 (2004)
..+.|+.++... +.. ...+... . .-.....+++ .++|+++++-..++.|+.++
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 567899988652 221 1111110 0 1123567888 77777777766778999998
Q ss_pred CCCCeeeEEEccC------------------CCCeEEEEEc-CCCCEEEEEECCCeEEEEECC
Q psy8748 1939 LLKTTHNGVLSGH------------------ENRVTSISLS-PNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1939 L~tge~l~tL~gH------------------s~~VtsLaFS-PDg~~LaSgS~DGtIrIWdls 1982 (2004)
. ++.... +.+. -....+|+++ ++|.++++=...+.|+.++++
T Consensus 372 ~-~G~v~t-~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 372 P-EGRVTT-YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp T-TSEEEE-EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred C-CCCEEE-EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 4 564433 3221 1236788888 566555555556777777654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0034 Score=83.49 Aligned_cols=152 Identities=11% Similarity=0.084 Sum_probs=87.3
Q ss_pred EEEEECCCCCEEEEEECC-----CeEEEEECCCCe--EEEEEe-cCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEEcc
Q psy8748 1828 VSISLSPDGQYFVTGSVD-----KSCKLWDFREKK--CVQTFF-GHEADVNSVCFHPSGLAFATGSE---DKTARLFDIR 1896 (2004)
Q Consensus 1828 tsLafSPdg~~LaSGS~D-----GsIrIWDlrs~k--~I~tl~-~h~s~ItsIafSPdg~~LaSgS~---DGtIrIWDLr 1896 (2004)
..++|+|||+.|+....| ..|+.+++.++. ....+. ........+.|+|||++|+..+. ...|.++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 357899999877777654 258888887653 122332 22344668899999998877653 3468889988
Q ss_pred CCc-ee--EEEcCCCCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEE-EccCCC--CeEEEEEcCCCCE
Q psy8748 1897 ADQ-QI--ATYLPPNKNSGFTSCAVSSSGRYIFCGSDD----NNVHVWDLLKTTHNGV-LSGHEN--RVTSISLSPNGMA 1966 (2004)
Q Consensus 1897 tgk-~i--~t~~~~~~~s~ItsLafSPdG~~LaSGSsD----GsIrIWDL~tge~l~t-L~gHs~--~VtsLaFSPDg~~ 1966 (2004)
++. .. ..+. .........+.|+..+.+++....+ ..|..+|+.++..... +..|.. .+.++.+. .+.+
T Consensus 304 ~~~~~~~~~~l~-~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~l 381 (751)
T 2xe4_A 304 KGNAHNTLEIVR-PREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYL 381 (751)
T ss_dssp SCTTCCCEEESS-CCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEE
T ss_pred CCCCCceeEEee-cCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEE
Confidence 753 22 2332 2233444555554434444444433 3677788765322222 223333 35566664 3345
Q ss_pred EEEEECCCeEE--EEEC
Q psy8748 1967 LVTSSWDQFVK--VWQE 1981 (2004)
Q Consensus 1967 LaSgS~DGtIr--IWdl 1981 (2004)
+++...||..+ ++++
T Consensus 382 v~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 382 VVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCEEEEEEEec
Confidence 56667777654 4554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.27 Score=64.15 Aligned_cols=283 Identities=10% Similarity=0.039 Sum_probs=154.7
Q ss_pred ceeEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec--CCeEEEEEcCCCCCCC
Q psy8748 1694 KVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM--DNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~--DGtIrVWDl~t~~~~~ 1770 (2004)
....+++.+.++.| ++-...+.|.+.+.........+...-....+|+++|.+..|+.+.. .+.|...+++...
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~--- 161 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS--- 161 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS---
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc---
Confidence 56789999865544 45556789999998654433333344455788999997665555543 3566666665321
Q ss_pred cceEEEEEecCccceeeeEEeC-CCcEEEe-ecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFID-DTTLLTG-SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSC 1848 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsd-d~~LlSg-S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsI 1848 (2004)
...+ ....-.....+++.. ++.++.+ ...+.|..+|++..... .+..+.......+++..+ ..+++-...+.|
T Consensus 162 -~~~l--~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~-~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V 236 (619)
T 3s94_A 162 -RFII--INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLPHPFALTLFED-ILYWTDWSTHSI 236 (619)
T ss_dssp -CEEE--ECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSE
T ss_pred -eEEE--EeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE-EEEeCCCCCceEEEEeCC-EEEEecCCCCEE
Confidence 1111 112233456677763 4454444 45678888888654332 222222223346677644 333343456778
Q ss_pred EEEECCCCeEEEEEec-----------CC--------------CCeEEEEE-----------eCCC--------------
Q psy8748 1849 KLWDFREKKCVQTFFG-----------HE--------------ADVNSVCF-----------HPSG-------------- 1878 (2004)
Q Consensus 1849 rIWDlrs~k~I~tl~~-----------h~--------------s~ItsIaf-----------SPdg-------------- 1878 (2004)
...|..+++....+.. |. +....+|+ +|.|
T Consensus 237 ~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~ 316 (619)
T 3s94_A 237 LACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGA 316 (619)
T ss_dssp EEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSC
T ss_pred EEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCC
Confidence 8888766543322211 00 00111111 1111
Q ss_pred -CEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEccCCCCeE
Q psy8748 1879 -LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVT 1956 (2004)
Q Consensus 1879 -~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~Vt 1956 (2004)
.+|+.+ ..+.|+..++..............-..+..++|++.+..|+.++ ..+.|+.++.........+...-....
T Consensus 317 ~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~ 395 (619)
T 3s94_A 317 TELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD 395 (619)
T ss_dssp SEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred ceEEEEE-cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC
Confidence 123333 24567777776543322221212234578899999666666555 478899999865444444443345678
Q ss_pred EEEEcCCCCEEE-EEECCCeEEEEECCCCe
Q psy8748 1957 SISLSPNGMALV-TSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1957 sLaFSPDg~~La-SgS~DGtIrIWdlstg~ 1985 (2004)
++++...+..|+ +-+..+.|.+.++++..
T Consensus 396 GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 396 GIAVDWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 999987555444 44456889999887653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.42 E-value=0.079 Score=65.21 Aligned_cols=233 Identities=8% Similarity=-0.022 Sum_probs=140.8
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEE-eecCCeEEEEECCCCc---eeEEeecc
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLT-GSGDMKIVTWNLETGQ---RIHEVAQA 1822 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlS-gS~DGtI~IWDl~tg~---~i~~il~~ 1822 (2004)
+++.+. ...|+..+++... . ..+......+..++|.. ++.++. -...+.|+.+++.... ....+...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~----~---~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~ 156 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSE----Y---TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 156 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCS----C---EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS
T ss_pred eeEEec-cceeEEEccCCcc----e---eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC
Confidence 344333 4568887776432 1 11223345667788874 444444 4457889999887522 12233333
Q ss_pred ccCCeEEEEECCCCCEEE-EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEEccCCc
Q psy8748 1823 HIGDVVSISLSPDGQYFV-TGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE--DKTARLFDIRADQ 1899 (2004)
Q Consensus 1823 h~~~ItsLafSPdg~~La-SGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~--DGtIrIWDLrtgk 1899 (2004)
.......+++++.++.|+ +-...+.|.+.+++.......+...-.....|++.|.+..|+.... .+.|...++....
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 445678899998555444 4456788999998766544444444456889999996666655542 3789999987443
Q ss_pred eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeE
Q psy8748 1900 QIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTTHNGVLSG--HENRVTSISLSPNGMALVTSSWDQFV 1976 (2004)
Q Consensus 1900 ~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge~l~tL~g--Hs~~VtsLaFSPDg~~LaSgS~DGtI 1976 (2004)
..... . ........+++++++..|+.++. .+.|..+|+........... .-....++++. .+.++++-...+.|
T Consensus 237 ~~~~~-~-~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 237 IYSLV-T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp CEEEE-C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred cEEEE-E-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 33322 1 22245789999998877777654 57899999864433333332 23456677773 33455555566889
Q ss_pred EEEECCCCeEEEEEE
Q psy8748 1977 KVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1977 rIWdlstg~l~k~Ik 1991 (2004)
..++..+|+....+.
T Consensus 314 ~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 314 FSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEESSSCCCCEEEE
T ss_pred EEEEcCCCCceEEEe
Confidence 999866665444443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.016 Score=67.28 Aligned_cols=236 Identities=14% Similarity=0.216 Sum_probs=124.5
Q ss_pred CCCEEEEee-cC-----CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC-----CeEEEEECCCC
Q psy8748 1745 SGNFVACGG-MD-----NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD-----MKIVTWNLETG 1813 (2004)
Q Consensus 1745 dg~~LaSGS-~D-----GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D-----GtI~IWDl~tg 1813 (2004)
++..++.|+ .+ ..+.+||..+.. ......... ...-.++...++..++.|+.+ ..+.+||..++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~----W~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQE----WSFLPSITR-KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTE----EEECCCCSS-CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCe----EEeCCCCCh-hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCC
Confidence 345566666 32 357778876542 111111111 111223333455566677654 46899999887
Q ss_pred c---eeEEe-eccccCCeEEEEECCCCCEEEEEECC-----CeEEEEECCCCeEEEE--EecCCCCeEEEEEeCCCCEEE
Q psy8748 1814 Q---RIHEV-AQAHIGDVVSISLSPDGQYFVTGSVD-----KSCKLWDFREKKCVQT--FFGHEADVNSVCFHPSGLAFA 1882 (2004)
Q Consensus 1814 ~---~i~~i-l~~h~~~ItsLafSPdg~~LaSGS~D-----GsIrIWDlrs~k~I~t--l~~h~s~ItsIafSPdg~~La 1882 (2004)
+ ..... ..........+.+ +++.++.|+.+ ..+.+||..+.+-... ........ +++. -+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVV-ASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEE-ETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEE-ECCEEEE
Confidence 6 33211 1111111222222 56677777654 3688999887653322 21111111 2222 2667777
Q ss_pred EEECC-----CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEccCC
Q psy8748 1883 TGSED-----KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD-----NNVHVWDLLKTTHNGVLSGHE 1952 (2004)
Q Consensus 1883 SgS~D-----GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD-----GsIrIWDL~tge~l~tL~gHs 1952 (2004)
.|+.+ ..+.+||..+.+-...-..+........+.+ ++++++.|+.+ ..+.+||..+.+-...-....
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC
Confidence 77754 4588999887654433222222222233333 56777777764 468999998765443221111
Q ss_pred C--CeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEEeec
Q psy8748 1953 N--RVTSISLSPNGMALVTSSWD-----QFVKVWQESNTIVWKVLKVYN 1994 (2004)
Q Consensus 1953 ~--~VtsLaFSPDg~~LaSgS~D-----GtIrIWdlstg~l~k~Ik~~~ 1994 (2004)
. ....+.+ ++++++.||.+ ..|.+||..+.. |..+..+.
T Consensus 243 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~~ 288 (301)
T 2vpj_A 243 PRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS-WEVVTSMG 288 (301)
T ss_dssp CCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE-EEEEEEEE
T ss_pred cccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe-EEEcCCCC
Confidence 1 1222222 67777888765 468899998864 77765543
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.03 Score=65.05 Aligned_cols=234 Identities=13% Similarity=0.137 Sum_probs=120.1
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC-----CeEEEEEcCCCCCCCc
Q psy8748 1703 DSRHCVSGS-LD-----GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD-----NMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1703 DG~~LASGS-~D-----GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D-----GtIrVWDl~t~~~~~~ 1771 (2004)
++..++.|| .+ ..+.+||..+++-...-..........+...++..++.|+.+ ..+.+||..+... ..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~-~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADED-GV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTT-CC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCC-Ce
Confidence 345566666 32 468899988775433211111111111222357778888765 3688888876430 00
Q ss_pred ceEEEEEecCccceeeeEEeCCCcEEEeecC-----CeEEEEECCCCceeEEeeccc-cCCeEEEEECCCCCEEEEEECC
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTTLLTGSGD-----MKIVTWNLETGQRIHEVAQAH-IGDVVSISLSPDGQYFVTGSVD 1845 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D-----GtI~IWDl~tg~~i~~il~~h-~~~ItsLafSPdg~~LaSGS~D 1845 (2004)
............ -.++...++..++.|+.+ ..+.+||..+++......... .....++.+ +++.++.|+.+
T Consensus 93 W~~~~~~p~~r~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 169 (301)
T 2vpj_A 93 WYSVAPMNVRRG-LAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYD 169 (301)
T ss_dssp CEEECCCSSCCB-SCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eEECCCCCCCcc-ceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCC
Confidence 222222222111 222333355556666643 468899998876442211111 111122222 56777777754
Q ss_pred -----CeEEEEECCCCeEEEEEecCCCC-eEEEEEeCCCCEEEEEECC-----CeEEEEEccCCceeEEEcCCCCCCCeE
Q psy8748 1846 -----KSCKLWDFREKKCVQTFFGHEAD-VNSVCFHPSGLAFATGSED-----KTARLFDIRADQQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1846 -----GsIrIWDlrs~k~I~tl~~h~s~-ItsIafSPdg~~LaSgS~D-----GtIrIWDLrtgk~i~t~~~~~~~s~It 1914 (2004)
..+.+||..+.+-...-...... -.+++. -++..++.|+.+ ..+.+||+.+.+-...-..+.......
T Consensus 170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 248 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVG 248 (301)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccccee
Confidence 35899998877543321111111 112222 256677777764 468999998765443322222222223
Q ss_pred EEEEcCCCCEEEEEeCC-----CeEEEEECCCCe
Q psy8748 1915 SCAVSSSGRYIFCGSDD-----NNVHVWDLLKTT 1943 (2004)
Q Consensus 1915 sLafSPdG~~LaSGSsD-----GsIrIWDL~tge 1943 (2004)
.+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 249 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 249 ATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 3333 67777777765 357888886654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.12 Score=61.67 Aligned_cols=232 Identities=10% Similarity=0.044 Sum_probs=130.1
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee---CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP---LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~---~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~ 1769 (2004)
..+.+++|++ +..++ ++.+|.|.. ....|+.-.... .+...+..+.+.+++..++++. +|.| |....+.
T Consensus 80 ~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v--~~S~DgG-- 151 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAI--YRTKDSG-- 151 (327)
T ss_dssp CEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCE--EEESSTT--
T ss_pred ccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccE--EEEcCCC--
Confidence 4678899986 44444 456675544 223344333332 1334578888877777666554 5533 3332211
Q ss_pred CcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEE
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCK 1849 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIr 1849 (2004)
...... ..+....+..+.+.+++.+++.+.+|.++.-+-..+..-..........+..+.+.+++..+ .++.+|.++
T Consensus 152 ~tW~~~--~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~ 228 (327)
T 2xbg_A 152 KNWQAL--VQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIA 228 (327)
T ss_dssp SSEEEE--ECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEE
T ss_pred CCCEEe--ecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEE
Confidence 122222 22344567777887777777776677665543221332222223455678899999988755 555688887
Q ss_pred EEECCCCeEEEEEe-c---CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC-CCCCCeEEEEEcCCCCE
Q psy8748 1850 LWDFREKKCVQTFF-G---HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP-NKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1850 IWDlrs~k~I~tl~-~---h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-~~~s~ItsLafSPdG~~ 1924 (2004)
+.+...++.-..+. . ....+.++.+.+++..++++ .+|.+ .+..+.++.-...... .....+..+.|.+++.
T Consensus 229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~- 305 (327)
T 2xbg_A 229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ- 305 (327)
T ss_dssp EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-
T ss_pred EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-
Confidence 77533233222222 1 22358889999887766655 47766 4455545444333211 1224567788875554
Q ss_pred EEEEeCCCeEEEEE
Q psy8748 1925 IFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1925 LaSGSsDGsIrIWD 1938 (2004)
+++++.+|.|.-++
T Consensus 306 ~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 306 GFILGQKGILLRYV 319 (327)
T ss_dssp EEEECSTTEEEEEC
T ss_pred eEEEcCCceEEEEc
Confidence 55666789877665
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.21 E-value=0.33 Score=67.78 Aligned_cols=284 Identities=15% Similarity=0.148 Sum_probs=160.7
Q ss_pred ccceeEEEEeCC------CCEEEEEeC-CCeEEEEECCCCceEEEeeCC-CCceEEEEEec--CCCEEEEeecCCeEEEE
Q psy8748 1692 INKVNSVHYSGD------SRHCVSGSL-DGKLIIWDTWTGNKTQVIPLR-SAWVMSVAFAQ--SGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1692 t~~VtsLaFSPD------G~~LASGS~-DGtIrVWDl~Tgk~l~ti~~H-t~~ItsLafSP--dg~~LaSGS~DGtIrVW 1761 (2004)
.+.|.|+++.|. +++++.|.. |++|+|+++.+.+.+...... .....++.+.. ...+|.+|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 357999999863 468999997 999999999887766554332 12344554432 34588899999998777
Q ss_pred EcCCCCCCCcceEEE-EEecCccceeeeEEeC-CCc-EEEeecCCeEEEEECCCCceeEEeeccccCCe-EEEEECCC--
Q psy8748 1762 DLNNRDSTGAAKVIR-ELLGYEGFLSSCRFID-DTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDV-VSISLSPD-- 1835 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~-sl~gh~~~Vssvafsd-d~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~I-tsLafSPd-- 1835 (2004)
.++... +.....+ ...| ..++.-..+.. +.. +++.+ +....+|--+ ++....- -....+ ....|+.+
T Consensus 633 ~~d~~t--g~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~--l~~~~v~~~~~F~se~~ 705 (1158)
T 3ei3_A 633 GLNIET--GLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSN--VNLKEVNYMCPLNSDGY 705 (1158)
T ss_dssp EECTTT--CCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEE--BSSSCCCEEEEECCSSS
T ss_pred EEcCCC--CccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEec--cChHHhceEeccCcccC
Confidence 765321 1122222 2223 33443333332 222 34443 4444444332 3322111 111123 23345432
Q ss_pred CCEEEEEECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCCCCEEEEEECC--------------------------
Q psy8748 1836 GQYFVTGSVDKSCKLWDFREKK--CVQTFFGHEADVNSVCFHPSGLAFATGSED-------------------------- 1887 (2004)
Q Consensus 1836 g~~LaSGS~DGsIrIWDlrs~k--~I~tl~~h~s~ItsIafSPdg~~LaSgS~D-------------------------- 1887 (2004)
..-++..+ ++.++|..+.+.. .++++ .-...++.++++|+.+.++.+..+
T Consensus 706 ~~g~v~~~-~~~LrI~~i~~~~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1158)
T 3ei3_A 706 PDSLALAN-NSTLTIGTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSV 783 (1158)
T ss_dssp TTEEEEEC-SSCEEEEEECCSSSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEE
T ss_pred CCcEEEEc-CCceEEEEecccCCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcc
Confidence 23444443 5568888775322 23333 345678889999877765544311
Q ss_pred -----------------------CeEEEEEccCCceeEEEcCCCCCCCeEEEEE---cC-CCCEEEEEe----------C
Q psy8748 1888 -----------------------KTARLFDIRADQQIATYLPPNKNSGFTSCAV---SS-SGRYIFCGS----------D 1930 (2004)
Q Consensus 1888 -----------------------GtIrIWDLrtgk~i~t~~~~~~~s~ItsLaf---SP-dG~~LaSGS----------s 1930 (2004)
+.|+++|-.+++.+..+..... ..+.+++. .. ...++++|+ .
T Consensus 784 ~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~n-E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~ 862 (1158)
T 3ei3_A 784 SSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQN-EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPK 862 (1158)
T ss_dssp CCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTT-EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCC
T ss_pred cccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCC-cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCC
Confidence 2367777777777766654443 34444443 22 247899887 3
Q ss_pred CCeEEEEECCCCeeeEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q psy8748 1931 DNNVHVWDLLKTTHNGVL-SGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWK 1988 (2004)
Q Consensus 1931 DGsIrIWDL~tge~l~tL-~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k 1988 (2004)
.|.|++|++..++..... ....+.|++++-- +|+ |++|- ..+|++|++...+..+
T Consensus 863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L~ 918 (1158)
T 3ei3_A 863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKELR 918 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCEE
T ss_pred ceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceEE
Confidence 588999998754433222 2346788888743 454 44443 4789999998765433
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.033 Score=64.81 Aligned_cols=233 Identities=15% Similarity=0.219 Sum_probs=120.7
Q ss_pred CCEEEEeecC----CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC-----CeEEEEECCCCcee
Q psy8748 1746 GNFVACGGMD----NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD-----MKIVTWNLETGQRI 1816 (2004)
Q Consensus 1746 g~~LaSGS~D----GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D-----GtI~IWDl~tg~~i 1816 (2004)
+..++.|+.+ ..+..||..+.. ........... .-.++...++..++.|+.+ ..+..||..+++..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEER----WHQVAELPSRR-CRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTE----EEEECCCSSCC-BSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCc----EeEcccCCccc-ccceEEEECCEEEEEeCcCCCccccceEEECCCCCcee
Confidence 3455555543 356777776532 12211111111 1122333455566677654 35889999877643
Q ss_pred EEeecc-ccCCeEEEEECCCCCEEEEEECCC-----eEEEEECCCCeEEEEEecCCC-CeEEEEEeCCCCEEEEEECC--
Q psy8748 1817 HEVAQA-HIGDVVSISLSPDGQYFVTGSVDK-----SCKLWDFREKKCVQTFFGHEA-DVNSVCFHPSGLAFATGSED-- 1887 (2004)
Q Consensus 1817 ~~il~~-h~~~ItsLafSPdg~~LaSGS~DG-----sIrIWDlrs~k~I~tl~~h~s-~ItsIafSPdg~~LaSgS~D-- 1887 (2004)
...... .........+ ++..++.|+.++ .+.+||..+.+-...-..... .-.+++. -+++.++.|+.+
T Consensus 91 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 167 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVA 167 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETT
T ss_pred eCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCC
Confidence 221111 1111222222 567777777654 588899887654322111111 1112222 256666666543
Q ss_pred -----CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEccCC--CCe
Q psy8748 1888 -----KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD-----NNVHVWDLLKTTHNGVLSGHE--NRV 1955 (2004)
Q Consensus 1888 -----GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD-----GsIrIWDL~tge~l~tL~gHs--~~V 1955 (2004)
..+.+||..+.+-...-..+........+.+ ++++++.|+.+ ..+.+||..+.+-...-.... ..-
T Consensus 168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA 245 (302)
T ss_dssp TTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC
Confidence 3588999887654433222222222233333 67777787764 368999997765433221111 111
Q ss_pred EEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEE
Q psy8748 1956 TSISLSPNGMALVTSSWDQ-----FVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1956 tsLaFSPDg~~LaSgS~DG-----tIrIWdlstg~l~k~Ik 1991 (2004)
..+. -++.+++.||.++ .+.+||..+.. |..+.
T Consensus 246 ~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~ 283 (302)
T 2xn4_A 246 GVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK-WTVVS 283 (302)
T ss_dssp EEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE-EEECS
T ss_pred eEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe-EEECC
Confidence 2222 2677788887654 48999999874 87765
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.057 Score=65.52 Aligned_cols=189 Identities=11% Similarity=0.235 Sum_probs=125.6
Q ss_pred CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCC----CC---EEEEEEC---CCeEEEEECC--CCeEEEE
Q psy8748 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD----GQ---YFVTGSV---DKSCKLWDFR--EKKCVQT 1861 (2004)
Q Consensus 1794 ~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPd----g~---~LaSGS~---DGsIrIWDlr--s~k~I~t 1861 (2004)
+.++.....+.+.+||+ +|+.+..+. .+.+..+..-|+ |+ ++++... +++|.+|++. ++. +..
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 34666667789999999 788776552 245666666552 22 2333333 4789999773 333 444
Q ss_pred Eec------CC-CCeEEEEE--eCC-CC-EEEEEECCCeEEEEEcc-------CCceeEEEcCCCCCCCeEEEEEcCCCC
Q psy8748 1862 FFG------HE-ADVNSVCF--HPS-GL-AFATGSEDKTARLFDIR-------ADQQIATYLPPNKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1862 l~~------h~-s~ItsIaf--SPd-g~-~LaSgS~DGtIrIWDLr-------tgk~i~t~~~~~~~s~ItsLafSPdG~ 1923 (2004)
+.. .. ..+..+|+ +|. +. ++++...+|.+..|++. +.+.+.++... +.+..|..++...
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~~g 192 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDEYG 192 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETTTT
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCCCC
Confidence 421 12 56677888 664 43 68888889999999983 33556666443 4688999999999
Q ss_pred EEEEEeCCCeEEEEECC-----CCeeeEEEc-cC-CCCeEEEEE--cCCCC-EEEEEE-CCCeEEEEECC-CCeEEEEE
Q psy8748 1924 YIFCGSDDNNVHVWDLL-----KTTHNGVLS-GH-ENRVTSISL--SPNGM-ALVTSS-WDQFVKVWQES-NTIVWKVL 1990 (2004)
Q Consensus 1924 ~LaSGSsDGsIrIWDL~-----tge~l~tL~-gH-s~~VtsLaF--SPDg~-~LaSgS-~DGtIrIWdls-tg~l~k~I 1990 (2004)
.|+++-++.-|..|+.+ +++.+..+. ++ ...+..|++ .++++ +|++++ .+++..+|+.. +.+....+
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 99999999778888865 345555542 22 246889988 45555 555555 57899999997 44433333
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.057 Score=62.93 Aligned_cols=236 Identities=11% Similarity=0.191 Sum_probs=124.4
Q ss_pred CCEEEEeecC--CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC----CeEEEEECCCCceeEEe
Q psy8748 1746 GNFVACGGMD--NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD----MKIVTWNLETGQRIHEV 1819 (2004)
Q Consensus 1746 g~~LaSGS~D--GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D----GtI~IWDl~tg~~i~~i 1819 (2004)
+..++.|+.+ ..+.+||..+.. ............ -.++...++..++.|+.+ ..+..||..+++.....
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~----W~~~~~~p~~r~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~ 86 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYS----WTDIRCPFEKRR-DAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL 86 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTE----EEECCCCSCCCB-SCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCC----EecCCCCCcccc-eeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC
Confidence 3455566543 467888876542 121111111111 122333455566777654 67899999887643221
Q ss_pred e-ccccCCeEEEEECCCCCEEEEEECC------CeEEEEECCCCeEEEEEecCCCC-eEEEEEeCCCCEEEEEEC-----
Q psy8748 1820 A-QAHIGDVVSISLSPDGQYFVTGSVD------KSCKLWDFREKKCVQTFFGHEAD-VNSVCFHPSGLAFATGSE----- 1886 (2004)
Q Consensus 1820 l-~~h~~~ItsLafSPdg~~LaSGS~D------GsIrIWDlrs~k~I~tl~~h~s~-ItsIafSPdg~~LaSgS~----- 1886 (2004)
. .........+.+ +++.++.|+.+ ..+.+||..+.+-...-...... -.+++. -+++.++.|+.
T Consensus 87 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 87 GPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTT
T ss_pred CCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCC
Confidence 1 111111222222 56777777765 45899999877543221111111 112222 25666666654
Q ss_pred ----CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEE--EccCCCCe
Q psy8748 1887 ----DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD-----NNVHVWDLLKTTHNGV--LSGHENRV 1955 (2004)
Q Consensus 1887 ----DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD-----GsIrIWDL~tge~l~t--L~gHs~~V 1955 (2004)
-..+.+||..+.+-...-..+........+.+ ++++++.|+.+ ..+.+||..+.+-... +.......
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 241 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV 241 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCC
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccce
Confidence 34588999887654333222222222223333 66777777653 4589999877543322 11111122
Q ss_pred EEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEEeec
Q psy8748 1956 TSISLSPNGMALVTSSWD-----QFVKVWQESNTIVWKVLKVYN 1994 (2004)
Q Consensus 1956 tsLaFSPDg~~LaSgS~D-----GtIrIWdlstg~l~k~Ik~~~ 1994 (2004)
..+.+ ++.+++.||.+ ..+.+||..+.. |..+..+.
T Consensus 242 ~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~ 282 (306)
T 3ii7_A 242 KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK-WVANSKVR 282 (306)
T ss_dssp EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE-EEEEEEEE
T ss_pred eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe-EEeCCCcc
Confidence 33333 67788888854 568999998874 88776554
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.075 Score=64.24 Aligned_cols=230 Identities=12% Similarity=0.121 Sum_probs=123.8
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceE--EEee---CCCCceEEEEEecC---CCEEEEeec-C-----Ce
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKT--QVIP---LRSAWVMSVAFAQS---GNFVACGGM-D-----NM 1757 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l--~ti~---~Ht~~ItsLafSPd---g~~LaSGS~-D-----Gt 1757 (2004)
-...+.++|.|+|+++++ ..+|.|++++ +++.. ..+. ........++|+|+ +..|.++.. . +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999995554 5679999998 45422 1121 12356889999998 555544433 2 66
Q ss_pred EEEEEcCCCCCCCcceEEEEEe---cCccceeeeEEeCCCcEEEeecC--------------CeEEEEECCCC-------
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELL---GYEGFLSSCRFIDDTTLLTGSGD--------------MKIVTWNLETG------- 1813 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~---gh~~~Vssvafsdd~~LlSgS~D--------------GtI~IWDl~tg------- 1813 (2004)
|..|+...............+. +.......+.|.+++.++++..+ |.|.-++.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 7778776421100111122222 11223457888877776665432 56777766531
Q ss_pred -----ceeEEeeccccCCeEEEEECC-CCCEEEEEECCCe--------EEEEECCC----------------CeEEEEEe
Q psy8748 1814 -----QRIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDKS--------CKLWDFRE----------------KKCVQTFF 1863 (2004)
Q Consensus 1814 -----~~i~~il~~h~~~ItsLafSP-dg~~LaSGS~DGs--------IrIWDlrs----------------~k~I~tl~ 1863 (2004)
........++ .....++|+| ++.++++-...+. |.+..-.. ..++..+
T Consensus 187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~- 264 (352)
T 2ism_A 187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW- 264 (352)
T ss_dssp TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence 0111111222 2356789999 5554444332222 33322110 0112222
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce------eEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ------IATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1864 ~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~------i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
.+......++| .+|..+++....+.|...++..... ...+. .....+..+++.|||.++++..
T Consensus 265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEEEe
Confidence 22234567777 4666666666677888888764431 12222 1235688999999998776654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=1.3 Score=57.87 Aligned_cols=292 Identities=8% Similarity=-0.022 Sum_probs=162.3
Q ss_pred ccceeEEEEeCCCCEEEEE-eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1692 INKVNSVHYSGDSRHCVSG-SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASG-S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
-...+.|+++++++.|..+ ...+.|...|+..........+......++++..+ ..+++-...+.|...|..++....
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence 3467899999876666555 44577888887544333222222223346676544 444454556778777765543110
Q ss_pred -------cceEEEEEecC------------ccceeeeEE------------e------C--------CCcEEEeecCCeE
Q psy8748 1771 -------AAKVIRELLGY------------EGFLSSCRF------------I------D--------DTTLLTGSGDMKI 1805 (2004)
Q Consensus 1771 -------~~k~i~sl~gh------------~~~Vssvaf------------s------d--------d~~LlSgS~DGtI 1805 (2004)
....+...... .+.+..++. . + ...++.-+..+.|
T Consensus 249 ~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i 328 (619)
T 3s94_A 249 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDL 328 (619)
T ss_dssp ECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCE
T ss_pred EEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccce
Confidence 00001111000 000100111 0 0 1113333344567
Q ss_pred EEEECCCCceeEEe-eccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC-CCEEE
Q psy8748 1806 VTWNLETGQRIHEV-AQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPS-GLAFA 1882 (2004)
Q Consensus 1806 ~IWDl~tg~~i~~i-l~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPd-g~~La 1882 (2004)
+..++......... .......+.+++|++.+..|+.+. ..+.|+.++.........+...-....++++... ++.++
T Consensus 329 ~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~ 408 (619)
T 3s94_A 329 RRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYW 408 (619)
T ss_dssp EEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE
T ss_pred EEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEE
Confidence 77777655422111 112234578899998666666555 5678999998754433333333356779999874 44555
Q ss_pred EEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEccCCCCeEEEEE
Q psy8748 1883 TGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD--DNNVHVWDLLKTTHNGVLSGHENRVTSISL 1960 (2004)
Q Consensus 1883 SgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs--DGsIrIWDL~tge~l~tL~gHs~~VtsLaF 1960 (2004)
+-+..+.|.+.++..... ..+.. ..-.....++++|...+|+..+. .+.|...++............-...+++++
T Consensus 409 tD~~~~~I~v~~~~G~~~-~~l~~-~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~Glal 486 (619)
T 3s94_A 409 TDTGTDRIEVTRLNGTMR-KILIS-EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLAL 486 (619)
T ss_dssp EETTTTEEEEEETTSCSC-EEEEC-TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred EeCCCCcEEEEeCCCCeE-EEEEE-CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEE
Confidence 555678899999875433 33322 23356789999997555555543 367777776433332223334567889999
Q ss_pred cCCCCEEEEEEC-CCeEEEEECCCCeE
Q psy8748 1961 SPNGMALVTSSW-DQFVKVWQESNTIV 1986 (2004)
Q Consensus 1961 SPDg~~LaSgS~-DGtIrIWdlstg~l 1986 (2004)
++++..|+.+.. .+.|..+++++...
T Consensus 487 D~~~~~LY~aD~~~~~I~~~~~dG~~~ 513 (619)
T 3s94_A 487 DYDEGKIYWGDAKTDKIEVMNTDGTGR 513 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred cccCCEEEEEECCCCEEEEEecCCCce
Confidence 987777777754 47899999876643
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.002 Score=85.21 Aligned_cols=243 Identities=10% Similarity=-0.020 Sum_probs=135.7
Q ss_pred CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEe-ecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1713 DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACG-GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSG-S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.+.|++.++.+......+.. ...+.+++|++.+..|+.+ ...+.|+.+++.......... ..+.........+++.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~--~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGLAVD 461 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCC--CBCCSCC--CCCEECC
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceE--EEEeCCCCCcceEEEE
Confidence 45788888776655444333 3356789999877666555 445789999886411000000 0011111123344443
Q ss_pred --CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC--CCeEEEEECCCCeEEEEEecCCC
Q psy8748 1792 --DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV--DKSCKLWDFREKKCVQTFFGHEA 1867 (2004)
Q Consensus 1792 --dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~--DGsIrIWDlrs~k~I~tl~~h~s 1867 (2004)
.+..+++-...+.|.++++...... .+..........++++|.+.+|+.+.. .+.|..+++............-.
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~ 540 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 540 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence 3334455556788999998755433 333333345678899997665555543 26788887754322222222234
Q ss_pred CeEEEEEeCCCCEEE-EEECCCeEEEEEccCCceeEEEcC-CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1868 DVNSVCFHPSGLAFA-TGSEDKTARLFDIRADQQIATYLP-PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1868 ~ItsIafSPdg~~La-SgS~DGtIrIWDLrtgk~i~t~~~-~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
..+.|+|+|++..|+ +-+..+.|..+|+..... ..+.. .........+++..+ .++++....+.|..+|..+++.+
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEE
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCce
Confidence 567899998755544 444567899999874333 33322 111122334555443 34444455689999998888887
Q ss_pred EEEccCCCCeEEEEEc
Q psy8748 1946 GVLSGHENRVTSISLS 1961 (2004)
Q Consensus 1946 ~tL~gHs~~VtsLaFS 1961 (2004)
..+.......++|++.
T Consensus 619 ~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 619 NLLAENLLSPEDMVLF 634 (699)
T ss_dssp ECCCTTCSSCCCCCBC
T ss_pred EEeecCCCCCcEEEEe
Confidence 7765433344555443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.048 Score=63.42 Aligned_cols=229 Identities=16% Similarity=0.208 Sum_probs=117.2
Q ss_pred CCEEEEEeCC----CeEEEEECCCCceEEEeeCCCCc-eEEEEEecCCCEEEEeecCC-----eEEEEEcCCCCCCCcce
Q psy8748 1704 SRHCVSGSLD----GKLIIWDTWTGNKTQVIPLRSAW-VMSVAFAQSGNFVACGGMDN-----MCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1704 G~~LASGS~D----GtIrVWDl~Tgk~l~ti~~Ht~~-ItsLafSPdg~~LaSGS~DG-----tIrVWDl~t~~~~~~~k 1773 (2004)
+..++.||.+ ..+.+||..+.+-...-...... -.+++. -++..++.|+.++ .+.+||..+.. ..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~----W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQ----WT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTE----EE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCc----ee
Confidence 3455556543 45888998877543321111111 112222 2677888887653 57788876542 22
Q ss_pred EEEEEecCccceeeeEEeCCCcEEEeecC-----CeEEEEECCCCceeEEeeccc-cCCeEEEEECCCCCEEEEEECC--
Q psy8748 1774 VIRELLGYEGFLSSCRFIDDTTLLTGSGD-----MKIVTWNLETGQRIHEVAQAH-IGDVVSISLSPDGQYFVTGSVD-- 1845 (2004)
Q Consensus 1774 ~i~sl~gh~~~Vssvafsdd~~LlSgS~D-----GtI~IWDl~tg~~i~~il~~h-~~~ItsLafSPdg~~LaSGS~D-- 1845 (2004)
......... .-.++...++..++.|+.+ ..+..||..+++......... .....++.+ +++.++.|+.+
T Consensus 91 ~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 167 (302)
T 2xn4_A 91 SVANMRDRR-STLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVA 167 (302)
T ss_dssp EECCCSSCC-BSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETT
T ss_pred eCCCCCccc-cceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCC
Confidence 222221111 1123333455566677655 358889988776442211111 111122222 56666666543
Q ss_pred -----CeEEEEECCCCeEEEE--EecCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEEccCCceeEEEcCCCCCCCe
Q psy8748 1846 -----KSCKLWDFREKKCVQT--FFGHEADVNSVCFHPSGLAFATGSED-----KTARLFDIRADQQIATYLPPNKNSGF 1913 (2004)
Q Consensus 1846 -----GsIrIWDlrs~k~I~t--l~~h~s~ItsIafSPdg~~LaSgS~D-----GtIrIWDLrtgk~i~t~~~~~~~s~I 1913 (2004)
..+.+||..+.+-... +....... +++. -++..++.|+.+ ..+.+||..+.+-...-..+......
T Consensus 168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA 245 (302)
T ss_dssp TTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CCccccEEEEEeCCCCcEEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC
Confidence 3588999887654322 11111111 2222 256777777764 36899999876543332222222222
Q ss_pred EEEEEcCCCCEEEEEeCCC-----eEEEEECCCCee
Q psy8748 1914 TSCAVSSSGRYIFCGSDDN-----NVHVWDLLKTTH 1944 (2004)
Q Consensus 1914 tsLafSPdG~~LaSGSsDG-----sIrIWDL~tge~ 1944 (2004)
..+.+ ++++++.|+.++ .+.+||..+.+-
T Consensus 246 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 246 GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 22222 677778877653 488999876643
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.25 Score=62.70 Aligned_cols=246 Identities=10% Similarity=0.106 Sum_probs=141.3
Q ss_pred ceeEEEEeC-CCCEEEEE-eCCCeEEEEECCCCceEEEeeCC---CCceEEEEE-------ecCCCEEEEeecCC-----
Q psy8748 1694 KVNSVHYSG-DSRHCVSG-SLDGKLIIWDTWTGNKTQVIPLR---SAWVMSVAF-------AQSGNFVACGGMDN----- 1756 (2004)
Q Consensus 1694 ~VtsLaFSP-DG~~LASG-S~DGtIrVWDl~Tgk~l~ti~~H---t~~ItsLaf-------SPdg~~LaSGS~DG----- 1756 (2004)
....|+|+| ++..|+.+ ...+.|++.|..++......... ......++| +++++.++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 567899998 34444444 44467999998887766555432 235899999 99999776665543
Q ss_pred --eEEEEEcCCCCCCCc-c--eEEEEEecCccceeeeEEeC-CCcEE-EeecCCeEEEEECC-------CCce-------
Q psy8748 1757 --MCTVYDLNNRDSTGA-A--KVIRELLGYEGFLSSCRFID-DTTLL-TGSGDMKIVTWNLE-------TGQR------- 1815 (2004)
Q Consensus 1757 --tIrVWDl~t~~~~~~-~--k~i~sl~gh~~~Vssvafsd-d~~Ll-SgS~DGtI~IWDl~-------tg~~------- 1815 (2004)
.|.+++......... . ...... .....++..+ ++.|+ +-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 255555332111110 1 222211 2234555555 44544 55577889999987 5543
Q ss_pred ----eEEee-ccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECC--CCeE--EEEEecC---C------------CCeE
Q psy8748 1816 ----IHEVA-QAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFR--EKKC--VQTFFGH---E------------ADVN 1870 (2004)
Q Consensus 1816 ----i~~il-~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlr--s~k~--I~tl~~h---~------------s~It 1870 (2004)
...+. .+.......++|+|+|++++++. ..+.|+.++.. .+.. ...+-+. . ....
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 11221 22234467999999999766654 55678886543 3321 0222221 1 1234
Q ss_pred -EEEEe-------CCCCEEEEEECCCeEEEEEccCCceeEEEcCC------------C----------CCCCeEEEEEcC
Q psy8748 1871 -SVCFH-------PSGLAFATGSEDKTARLFDIRADQQIATYLPP------------N----------KNSGFTSCAVSS 1920 (2004)
Q Consensus 1871 -sIafS-------Pdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~------------~----------~~s~ItsLafSP 1920 (2004)
.++.. +++.++++-..+.+|+.++ .++. +.++... + .-.....+++++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 45554 4566666666778899998 3453 3333211 0 112356889998
Q ss_pred C-CCEEEEEeCCCeEEEEECCCCeee
Q psy8748 1921 S-GRYIFCGSDDNNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1921 d-G~~LaSGSsDGsIrIWDL~tge~l 1945 (2004)
+ |.++++=..+..|+.+++......
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCEEEEEeCCCCEEEEEECCCCccc
Confidence 6 655555556778998887655444
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.067 Score=62.77 Aligned_cols=230 Identities=10% Similarity=0.065 Sum_probs=116.9
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC-ccceeeeEEeCCCcEEEeec-----C------CeEEEEECCCCce
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY-EGFLSSCRFIDDTTLLTGSG-----D------MKIVTWNLETGQR 1815 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh-~~~Vssvafsdd~~LlSgS~-----D------GtI~IWDl~tg~~ 1815 (2004)
+++.|+ ..+..||..+.. ... ...... ...-.++...++..++.|+. . ..+..||..+++.
T Consensus 7 l~~~GG--~~~~~yd~~~~~----W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANE----CYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp EEEEET--TEEEEEETTTTE----EEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred EEEEcC--CceEEECCCCCe----Eec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence 344555 568889887653 221 222111 12222333345666667763 1 2378899988764
Q ss_pred eEEeecc-ccCCeEEEEECCCCCEEEEEECC--------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC
Q psy8748 1816 IHEVAQA-HIGDVVSISLSPDGQYFVTGSVD--------KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE 1886 (2004)
Q Consensus 1816 i~~il~~-h~~~ItsLafSPdg~~LaSGS~D--------GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~ 1886 (2004)
....... .......+.+ ++..++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.|+.
T Consensus 80 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 80 LGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp EECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred EECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 3211000 0111112222 56666677632 35899999876532211111111111122235667777775
Q ss_pred -C-----CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEEEccCC--C
Q psy8748 1887 -D-----KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN-----NVHVWDLLKTTHNGVLSGHE--N 1953 (2004)
Q Consensus 1887 -D-----GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDG-----sIrIWDL~tge~l~tL~gHs--~ 1953 (2004)
+ ..+.+||..+.+-...-..+........+.+ ++++++.|+.++ .+.+||..+.+-...-.... .
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 235 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 2 3589999887643322211222222233333 677778887654 58899987765433221111 1
Q ss_pred CeEEEEEcCCCCEEEEEECCC--------------eEEEEECCCCeEEEEEE
Q psy8748 1954 RVTSISLSPNGMALVTSSWDQ--------------FVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1954 ~VtsLaFSPDg~~LaSgS~DG--------------tIrIWdlstg~l~k~Ik 1991 (2004)
....+.+ ++++++.||.++ .|.+||+.+. .|..+.
T Consensus 236 ~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~-~W~~~~ 284 (315)
T 4asc_A 236 SLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK-KWEGVL 284 (315)
T ss_dssp SCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT-EEEEEE
T ss_pred ceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC-hhhhhc
Confidence 1222222 667777787642 4778999887 488773
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.92 E-value=1 Score=59.54 Aligned_cols=273 Identities=12% Similarity=0.047 Sum_probs=154.0
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcc
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~ 1772 (2004)
..|.++....+| .|..|+.+| +..||..+.+...........|.++.. .+| .+..|+.+ .+..++..+.. .
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~----~ 133 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRK----L 133 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCC----E
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCe----E
Confidence 468888877766 566666655 789998776433211112335777654 344 45556655 47788875432 1
Q ss_pred eEEEEE-e-cCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeecc----ccCCeEEEEECCCCCEEEEEECCC
Q psy8748 1773 KVIREL-L-GYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQA----HIGDVVSISLSPDGQYFVTGSVDK 1846 (2004)
Q Consensus 1773 k~i~sl-~-gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~----h~~~ItsLafSPdg~~LaSGS~DG 1846 (2004)
...... . .....+.++....++.+.+|+.+ .+..+|..+++........ ....|.++....++..|.+|+. +
T Consensus 134 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~ 211 (758)
T 3ott_A 134 TSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-G 211 (758)
T ss_dssp EEECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-E
T ss_pred EEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-C
Confidence 111000 0 11234666666667778888765 5778888776543211111 1224888888877777777774 5
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC-----CCCCCeEEEEEcCC
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP-----NKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-----~~~s~ItsLafSPd 1921 (2004)
.+..+|..+++...........|.++....+|.+. .|+. +-+.+++..++......... -....|.++..+.+
T Consensus 212 Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~ 289 (758)
T 3ott_A 212 YLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE 289 (758)
T ss_dssp EEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT
T ss_pred CCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC
Confidence 68889987765432211123458888888777654 4554 45888887765443221111 12245888888888
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEEc-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1922 GRYIFCGSDDNNVHVWDLLKTTHNGVLS-----GHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1922 G~~LaSGSsDGsIrIWDL~tge~l~tL~-----gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
|.+. +|+..| +.++.....-...... .....|.++.-..+|.+.+. +.+| +..++..
T Consensus 290 g~lW-iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~ 351 (758)
T 3ott_A 290 HNIW-LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDP 351 (758)
T ss_dssp CCEE-EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCT
T ss_pred CCEE-EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccc
Confidence 8754 455667 5444322111111111 12346888888888875544 4454 5555544
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.062 Score=62.98 Aligned_cols=236 Identities=15% Similarity=0.164 Sum_probs=121.5
Q ss_pred CCCEEEEeecC----CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec----C-----CeEEEEECC
Q psy8748 1745 SGNFVACGGMD----NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG----D-----MKIVTWNLE 1811 (2004)
Q Consensus 1745 dg~~LaSGS~D----GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~----D-----GtI~IWDl~ 1811 (2004)
++..++.|+.+ ..+.+||..+.. ........... .-.++...++..++.|+. + ..+.+||..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGT----WLRLADLQVPR-SGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTE----EEECCCCSSCC-BSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCe----EeECCCCCccc-ccceEEEECCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 45566666532 356777776532 11111111111 112233345555666665 2 468899998
Q ss_pred CCceeEEee-ccccCCeEEEEECCCCCEEEEEECC-----CeEEEEECCCCeEEEEE--ecCCCCeEEEEEeCCCCEEEE
Q psy8748 1812 TGQRIHEVA-QAHIGDVVSISLSPDGQYFVTGSVD-----KSCKLWDFREKKCVQTF--FGHEADVNSVCFHPSGLAFAT 1883 (2004)
Q Consensus 1812 tg~~i~~il-~~h~~~ItsLafSPdg~~LaSGS~D-----GsIrIWDlrs~k~I~tl--~~h~s~ItsIafSPdg~~LaS 1883 (2004)
+++...... .........+.+ +++.++.|+.+ ..+.+||..+.+-...- ......- +++.. ++..++.
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~ 174 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVL-NRLLYAV 174 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEE
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEE-CCEEEEE
Confidence 776432110 111111222223 56677776643 35889998876533221 1111111 22222 5667777
Q ss_pred EECC-----CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEE--EccC
Q psy8748 1884 GSED-----KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD-----NNVHVWDLLKTTHNGV--LSGH 1951 (2004)
Q Consensus 1884 gS~D-----GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD-----GsIrIWDL~tge~l~t--L~gH 1951 (2004)
|+.+ ..+.+||..+.+-...-..+........+.+ ++++++.|+.+ ..+.+||+.+.+-... +...
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC
Confidence 7654 4588999876654322211222222233333 67777777764 5699999877653322 1111
Q ss_pred CCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEEeec
Q psy8748 1952 ENRVTSISLSPNGMALVTSSWD-----QFVKVWQESNTIVWKVLKVYN 1994 (2004)
Q Consensus 1952 s~~VtsLaFSPDg~~LaSgS~D-----GtIrIWdlstg~l~k~Ik~~~ 1994 (2004)
......+.+ ++++++.||.+ ..+.+||..+. .|..+..+.
T Consensus 253 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p 297 (308)
T 1zgk_A 253 RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD-TWSEVTRMT 297 (308)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT-EEEEEEECS
T ss_pred ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC-EEeecCCCC
Confidence 111222222 67777888754 46889999887 488776554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.44 Score=63.89 Aligned_cols=224 Identities=7% Similarity=-0.039 Sum_probs=133.6
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCc-EEEeecCCeEEEEECCCCc---eeEEeeccccCCeEEE
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTT-LLTGSGDMKIVTWNLETGQ---RIHEVAQAHIGDVVSI 1830 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~-LlSgS~DGtI~IWDl~tg~---~i~~il~~h~~~ItsL 1830 (2004)
..|+..++.... . ..+......+..+.+.. ++. +++-...+.|+.+++.... ....+..........|
T Consensus 404 ~~Ir~i~l~~~~----~---~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL 476 (791)
T 3m0c_C 404 HEVRKMTLDRSE----Y---TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 476 (791)
T ss_dssp SSEEEECTTSCC----C---EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred cceeEeeccCCc----c---eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence 457776665431 1 11222344556777764 344 4455556889888887531 1223333344567789
Q ss_pred EECCCCCEEEEE-ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-C-CeEEEEEccCCceeEEEcCC
Q psy8748 1831 SLSPDGQYFVTG-SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE-D-KTARLFDIRADQQIATYLPP 1907 (2004)
Q Consensus 1831 afSPdg~~LaSG-S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~-D-GtIrIWDLrtgk~i~t~~~~ 1907 (2004)
++++.++.|+.+ ...+.|.+.++........+...-.....|++.|.+.+|+.+.. . +.|...++..... ..+..
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~- 554 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT- 554 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEEC-
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEe-
Confidence 999877655555 45678999998765543334344456889999997666655543 2 6899999874433 33322
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEcc--CCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCC
Q psy8748 1908 NKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTTHNGVLSG--HENRVTSISLSPNGMALVTS-SWDQFVKVWQESN 1983 (2004)
Q Consensus 1908 ~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge~l~tL~g--Hs~~VtsLaFSPDg~~LaSg-S~DGtIrIWdlst 1983 (2004)
........+++++.+..|+.+.. .+.|..+++........+.. .-....+|++.. ..|+.+ ...+.|...+..+
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEEEEeCCC
Confidence 22356789999987777776654 57899999855444333332 223456777643 345444 4567888888766
Q ss_pred CeEEEEE
Q psy8748 1984 TIVWKVL 1990 (2004)
Q Consensus 1984 g~l~k~I 1990 (2004)
|.....+
T Consensus 633 G~~~~~l 639 (791)
T 3m0c_C 633 GSDVNLL 639 (791)
T ss_dssp CCCCEEE
T ss_pred CcceEEe
Confidence 6544444
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.14 Score=62.20 Aligned_cols=193 Identities=13% Similarity=0.225 Sum_probs=121.3
Q ss_pred CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-----CC---cEEEee-c--CCeEEEEECC--C
Q psy8748 1746 GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-----DT---TLLTGS-G--DMKIVTWNLE--T 1812 (2004)
Q Consensus 1746 g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-----d~---~LlSgS-~--DGtI~IWDl~--t 1812 (2004)
...++.....+.+.+||+.. +.+..+.. +.+..+...+ +. .+++.. . +++|.+|++. +
T Consensus 40 ~s~ii~t~k~~gL~Vydl~G-------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~ 110 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLDG-------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN 110 (355)
T ss_dssp GCEEEEEETTTEEEEEETTS-------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT
T ss_pred ccEEEEEcCCCCEEEEcCCC-------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC
Confidence 45666666778899999943 33333332 2333333322 11 223333 3 5789999763 4
Q ss_pred CceeEEeec-----ccc-CCeEEEEE--CCC-CC-EEEEEECCCeEEEEECC-------CCeEEEEEecCCCCeEEEEEe
Q psy8748 1813 GQRIHEVAQ-----AHI-GDVVSISL--SPD-GQ-YFVTGSVDKSCKLWDFR-------EKKCVQTFFGHEADVNSVCFH 1875 (2004)
Q Consensus 1813 g~~i~~il~-----~h~-~~ItsLaf--SPd-g~-~LaSGS~DGsIrIWDlr-------s~k~I~tl~~h~s~ItsIafS 1875 (2004)
+. +..+.. ... ..+..+|+ ++. +. ++++...+|.+..|++. +.+.++++.- .+.+..+...
T Consensus 111 ~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvD 188 (355)
T 3amr_A 111 GT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAAD 188 (355)
T ss_dssp CC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEE
T ss_pred Cc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEc
Confidence 43 323311 011 55667777 774 43 68888899999999883 3355666643 5678899999
Q ss_pred CCCCEEEEEECCCeEEEEEcc-----CCceeEEEcCCCCCCCeEEEEE--cCCCC-EEEEEe-CCCeEEEEECC-CCeee
Q psy8748 1876 PSGLAFATGSEDKTARLFDIR-----ADQQIATYLPPNKNSGFTSCAV--SSSGR-YIFCGS-DDNNVHVWDLL-KTTHN 1945 (2004)
Q Consensus 1876 Pdg~~LaSgS~DGtIrIWDLr-----tgk~i~t~~~~~~~s~ItsLaf--SPdG~-~LaSGS-sDGsIrIWDL~-tge~l 1945 (2004)
+....|+.+-++..|..++.+ +++.+..+........+..+++ .++|+ ||++++ .++++.+||.. +.+.+
T Consensus 189 d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 189 DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 988899999998777777754 2344544433333346777877 45666 677666 57799999996 67777
Q ss_pred EEEc
Q psy8748 1946 GVLS 1949 (2004)
Q Consensus 1946 ~tL~ 1949 (2004)
..+.
T Consensus 269 g~f~ 272 (355)
T 3amr_A 269 ADFR 272 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7763
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.087 Score=61.40 Aligned_cols=227 Identities=11% Similarity=0.054 Sum_probs=118.0
Q ss_pred CEEEEEeC--CCeEEEEECCCCceEEEe--eCCCCceEEEEEecCCCEEEEeecC----CeEEEEEcCCCCCCCcceEEE
Q psy8748 1705 RHCVSGSL--DGKLIIWDTWTGNKTQVI--PLRSAWVMSVAFAQSGNFVACGGMD----NMCTVYDLNNRDSTGAAKVIR 1776 (2004)
Q Consensus 1705 ~~LASGS~--DGtIrVWDl~Tgk~l~ti--~~Ht~~ItsLafSPdg~~LaSGS~D----GtIrVWDl~t~~~~~~~k~i~ 1776 (2004)
..++.||. ...+.+||..+++-...- ......-..+. -++..++.|+.+ ..+.+||..+.. .....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~----W~~~~ 86 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDS----WYSKL 86 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTE----EEEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCe----EEECC
Confidence 34555654 357889998877544321 11111112222 367778888765 567888876542 22222
Q ss_pred EEecCccceeeeEEeCCCcEEEeecC------CeEEEEECCCCceeEEeecc-ccCCeEEEEECCCCCEEEEEEC-----
Q psy8748 1777 ELLGYEGFLSSCRFIDDTTLLTGSGD------MKIVTWNLETGQRIHEVAQA-HIGDVVSISLSPDGQYFVTGSV----- 1844 (2004)
Q Consensus 1777 sl~gh~~~Vssvafsdd~~LlSgS~D------GtI~IWDl~tg~~i~~il~~-h~~~ItsLafSPdg~~LaSGS~----- 1844 (2004)
....... -.++...++..++.|+.+ ..+.+||..+++....-... .......+.+ +++.++.|+.
T Consensus 87 ~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 87 GPPTPRD-SLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNV 163 (306)
T ss_dssp CCSSCCB-SCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTT
T ss_pred CCCcccc-ceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCC
Confidence 2221111 222333455566677654 46899999887643221111 1111122222 5666666653
Q ss_pred ----CCeEEEEECCCCeEEEEEecCCCC-eEEEEEeCCCCEEEEEECC-----CeEEEEEccCCceeEEEcCCCCCCCeE
Q psy8748 1845 ----DKSCKLWDFREKKCVQTFFGHEAD-VNSVCFHPSGLAFATGSED-----KTARLFDIRADQQIATYLPPNKNSGFT 1914 (2004)
Q Consensus 1845 ----DGsIrIWDlrs~k~I~tl~~h~s~-ItsIafSPdg~~LaSgS~D-----GtIrIWDLrtgk~i~t~~~~~~~s~It 1914 (2004)
-..+.+||..+.+-...-...... -.+++.. +++.++.|+.+ ..+.+||..+.+-...-..+.......
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 242 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK 242 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCE
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcccee
Confidence 345889999877533221111111 1122222 56677776653 358899988765332221122222233
Q ss_pred EEEEcCCCCEEEEEeCC-----CeEEEEECCCCe
Q psy8748 1915 SCAVSSSGRYIFCGSDD-----NNVHVWDLLKTT 1943 (2004)
Q Consensus 1915 sLafSPdG~~LaSGSsD-----GsIrIWDL~tge 1943 (2004)
++.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 243 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 243 CAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 3333 67788888754 568899987754
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.13 Score=65.34 Aligned_cols=241 Identities=11% Similarity=0.069 Sum_probs=137.9
Q ss_pred ceEEEEEec-CCCEEEEe-ecCCeEEEEEcCCCCCCCcceEEEEEec----CccceeeeEE-------eCCC-cEEEeec
Q psy8748 1736 WVMSVAFAQ-SGNFVACG-GMDNMCTVYDLNNRDSTGAAKVIRELLG----YEGFLSSCRF-------IDDT-TLLTGSG 1801 (2004)
Q Consensus 1736 ~ItsLafSP-dg~~LaSG-S~DGtIrVWDl~t~~~~~~~k~i~sl~g----h~~~Vssvaf-------sdd~-~LlSgS~ 1801 (2004)
....|+|+| ++..|+++ ...+.|++.|...+. +..+.. .......++| ..++ .++++..
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~ 212 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAID 212 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEEC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-------EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeC
Confidence 467899998 34444444 444678888876532 222211 1224677888 6544 4666655
Q ss_pred CC-------eEEEEECCC-CceeE----EeeccccCCeEEEEECCCC-CEEEEEECCCeEEEEECC-------CCeE---
Q psy8748 1802 DM-------KIVTWNLET-GQRIH----EVAQAHIGDVVSISLSPDG-QYFVTGSVDKSCKLWDFR-------EKKC--- 1858 (2004)
Q Consensus 1802 DG-------tI~IWDl~t-g~~i~----~il~~h~~~ItsLafSPdg-~~LaSGS~DGsIrIWDlr-------s~k~--- 1858 (2004)
.+ .|.+++... +.... ..... ......++++|++ .++++-..++.|..+|+. ++..
T Consensus 213 ~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 213 YDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp CCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 43 366776444 22210 11111 2234578899954 445555577889999987 4442
Q ss_pred --------EEE-E-ecCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEEccC--Cce--eEEEcCC----CC---------C
Q psy8748 1859 --------VQT-F-FGHEADVNSVCFHPSGLAFATG-SEDKTARLFDIRA--DQQ--IATYLPP----NK---------N 1910 (2004)
Q Consensus 1859 --------I~t-l-~~h~s~ItsIafSPdg~~LaSg-S~DGtIrIWDLrt--gk~--i~t~~~~----~~---------~ 1910 (2004)
... + .+.......++|+|+|++++.+ +....|+.++... +.. ...+... +. -
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 112 1 1233456899999999965554 4567898876543 221 0122110 00 0
Q ss_pred CCeE-EEEEc-------CCCCEEEEEeCCCeEEEEECCCCeeeEEEccC------------------------CCCeEEE
Q psy8748 1911 SGFT-SCAVS-------SSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH------------------------ENRVTSI 1958 (2004)
Q Consensus 1911 s~It-sLafS-------PdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH------------------------s~~VtsL 1958 (2004)
.... .++.. .+|.++++=..+++|+.++ .++. +.++.+. -....+|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 1233 44554 4566666666778999998 4664 3344221 1236789
Q ss_pred EEcCC-CCEEEEEECCCeEEEEECCCCeE
Q psy8748 1959 SLSPN-GMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1959 aFSPD-g~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
+++++ |.+.++=...+.|+.++++....
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 99987 66555556678899999887643
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.14 Score=61.68 Aligned_cols=204 Identities=10% Similarity=0.090 Sum_probs=131.5
Q ss_pred EecCccceeeeEEeC-CCcEEEee-cCCeEEEEECCCCceeEEeecc----c--cCCeEEEEE---CCCCCEEEEEEC--
Q psy8748 1778 LLGYEGFLSSCRFID-DTTLLTGS-GDMKIVTWNLETGQRIHEVAQA----H--IGDVVSISL---SPDGQYFVTGSV-- 1844 (2004)
Q Consensus 1778 l~gh~~~Vssvafsd-d~~LlSgS-~DGtI~IWDl~tg~~i~~il~~----h--~~~ItsLaf---SPdg~~LaSGS~-- 1844 (2004)
+........+..|.. ++.++.++ ..|.|..||...+......... . ...+..+.| .|+++++++...
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 334455566788874 55666666 7899999999866543232221 1 113578999 688777775442
Q ss_pred -----------CCeEEEEECC---CCeEEEEEe--c-----------CCCCeEEEEEeCCCCEEEEEECC-CeEEEEEcc
Q psy8748 1845 -----------DKSCKLWDFR---EKKCVQTFF--G-----------HEADVNSVCFHPSGLAFATGSED-KTARLFDIR 1896 (2004)
Q Consensus 1845 -----------DGsIrIWDlr---s~k~I~tl~--~-----------h~s~ItsIafSPdg~~LaSgS~D-GtIrIWDLr 1896 (2004)
++.+..||+. +++.+.... . .......++..++|+..++++.. +.|..++..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 6789999998 776655443 1 11247899999999999999988 888888766
Q ss_pred CCceeEEE--cC--CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee--eEEEc--cC---CCCeEEE-EEcCCC
Q psy8748 1897 ADQQIATY--LP--PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTH--NGVLS--GH---ENRVTSI-SLSPNG 1964 (2004)
Q Consensus 1897 tgk~i~t~--~~--~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~--l~tL~--gH---s~~VtsL-aFSPDg 1964 (2004)
.. ....+ .. .......+.++++|+|+.|++....|.+..+|+.+... +. .. +. -.....+ ..-.+|
T Consensus 168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp SC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETT
T ss_pred CC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCC
Confidence 43 33222 11 12234467899999999999888899999999875332 21 11 22 1223443 333477
Q ss_pred CE-EEEEECCCeEEEEECCC
Q psy8748 1965 MA-LVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1965 ~~-LaSgS~DGtIrIWdlst 1983 (2004)
+. +++.+..+.+.+.+.++
T Consensus 246 ~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEEEETTEEEEEECSST
T ss_pred EEEEEEcCCCCEEEEECCCC
Confidence 77 55556666666665544
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.72 E-value=1.3 Score=58.45 Aligned_cols=279 Identities=12% Similarity=0.053 Sum_probs=160.0
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcce
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k 1773 (2004)
.|.++...+++..|..|+. +-+..+|..+++...........|.++....+|.+.+. +.+| +.+++..+.. ..
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~G-l~~~~~~~~~----~~ 264 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDNG-LYVYHNDTTP----LQ 264 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETTE-EEEECCTTSC----CE
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCCc-eeEEecCCCc----EE
Confidence 4888988887776555654 45888998776543322222345888888777776654 4444 7777765432 11
Q ss_pred EEEEEe-----cCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEee----ccccCCeEEEEECCCCCEEEEEEC
Q psy8748 1774 VIRELL-----GYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVA----QAHIGDVVSISLSPDGQYFVTGSV 1844 (2004)
Q Consensus 1774 ~i~sl~-----gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il----~~h~~~ItsLafSPdg~~LaSGS~ 1844 (2004)
...... -....|.++....++.+.+|+..| +.++.....-...... ......|.++....+|+ +.+|+.
T Consensus 265 ~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~-lWiGt~ 342 (758)
T 3ott_A 265 HIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGF-YWFGGA 342 (758)
T ss_dssp EECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCC-EEEEET
T ss_pred EEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCC-EEEeeC
Confidence 111000 112346666666677788888777 5544332211110100 01134688888887776 555665
Q ss_pred CCeEEEEECCCCe--EEEEEec-------CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEc-CCC---CCC
Q psy8748 1845 DKSCKLWDFREKK--CVQTFFG-------HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL-PPN---KNS 1911 (2004)
Q Consensus 1845 DGsIrIWDlrs~k--~I~tl~~-------h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~-~~~---~~s 1911 (2004)
+ -+..++..++. ....+.. ....|.++.-..+|+. ..|+ ++-+..||..+++...... ... ...
T Consensus 343 ~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (758)
T 3ott_A 343 N-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQL-WIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTN 419 (758)
T ss_dssp T-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCE-EEEE-TTEEEEEETTTTEEEEEEEECCC--CBSS
T ss_pred C-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCE-EEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCc
Confidence 5 46667655431 1222211 1235888888777764 4565 4579999988765433211 111 124
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----Ceee---EEEc---c-CCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1912 GFTSCAVSSSGRYIFCGSDDNNVHVWDLLK-----TTHN---GVLS---G-HENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1912 ~ItsLafSPdG~~LaSGSsDGsIrIWDL~t-----ge~l---~tL~---g-Hs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
.|.++..+.+|+ |.+|+..+-+..+|..+ .... ..+. + ....|.++...++|.+.+.++..+-|..|
T Consensus 420 ~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~ 498 (758)
T 3ott_A 420 WTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKI 498 (758)
T ss_dssp SEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEE
T ss_pred eEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEE
Confidence 577888777766 45566666688888542 1111 1111 1 12358999999999877644444558888
Q ss_pred ECCCCe
Q psy8748 1980 QESNTI 1985 (2004)
Q Consensus 1980 dlstg~ 1985 (2004)
+..++.
T Consensus 499 d~~~~~ 504 (758)
T 3ott_A 499 NPRTRE 504 (758)
T ss_dssp ETTTTE
T ss_pred eCCCCc
Confidence 987764
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.045 Score=65.25 Aligned_cols=241 Identities=15% Similarity=0.065 Sum_probs=115.1
Q ss_pred CCCEEEEeecC-CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec-C---------CeEEEEECCCC
Q psy8748 1745 SGNFVACGGMD-NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-D---------MKIVTWNLETG 1813 (2004)
Q Consensus 1745 dg~~LaSGS~D-GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~-D---------GtI~IWDl~tg 1813 (2004)
++..++.|+.+ ..+.+||..... ...............-.+++..++..++.|+. + ..+..||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~--~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKD--KKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSS--CCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCC--CCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666666644 457777775311 12222222221111222333445556666665 2 46899999887
Q ss_pred ceeEEeecc-ccCCeEEEEECCCCCEEEEEECC---------------------------------------CeEEEEEC
Q psy8748 1814 QRIHEVAQA-HIGDVVSISLSPDGQYFVTGSVD---------------------------------------KSCKLWDF 1853 (2004)
Q Consensus 1814 ~~i~~il~~-h~~~ItsLafSPdg~~LaSGS~D---------------------------------------GsIrIWDl 1853 (2004)
+........ ....-.+++. .+++.++.|+.+ ..+.+||.
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred cEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 644221111 1111122222 467777888754 57999998
Q ss_pred CCCeEEEE--EecCCCCeEEEEEeCCCCEEEEEEC------CCeEEEEEccCCceeEEEcCC--CCCCCeEEEEEcCCCC
Q psy8748 1854 REKKCVQT--FFGHEADVNSVCFHPSGLAFATGSE------DKTARLFDIRADQQIATYLPP--NKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1854 rs~k~I~t--l~~h~s~ItsIafSPdg~~LaSgS~------DGtIrIWDLrtgk~i~t~~~~--~~~s~ItsLafSPdG~ 1923 (2004)
.+.+-... +......-.+++.. ++..++.|+. ...+.+||+............ .........+...+++
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 254 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDS 254 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTE
T ss_pred CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCE
Confidence 87653322 21111111233332 5566666653 345777887222222222111 1111111112233567
Q ss_pred EEEEEeCC----------------------CeEEEEECCCCe--eeEEEccCCCCeEEEEEcCCCCEEEEEECCC-----
Q psy8748 1924 YIFCGSDD----------------------NNVHVWDLLKTT--HNGVLSGHENRVTSISLSPNGMALVTSSWDQ----- 1974 (2004)
Q Consensus 1924 ~LaSGSsD----------------------GsIrIWDL~tge--~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DG----- 1974 (2004)
+++.|+.+ ..+.+||..+.+ .+..+......-.++ .-++++++.||.++
T Consensus 255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~ 332 (357)
T 2uvk_A 255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGKAV 332 (357)
T ss_dssp EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGCEE
T ss_pred EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCCEe
Confidence 77777632 257889987543 333332222222222 34778888888653
Q ss_pred -eEEEEECCCCeEEEEEE
Q psy8748 1975 -FVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1975 -tIrIWdlstg~l~k~Ik 1991 (2004)
.|.++++++++..+...
T Consensus 333 ~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 333 TDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EEEEEEEC-CCSCEEEC-
T ss_pred eeEEEEEEcCcEeEeeec
Confidence 46667888887555444
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.5 Score=57.18 Aligned_cols=233 Identities=15% Similarity=0.116 Sum_probs=126.7
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc-eEEEee---CCCCceEEEEEecC---CCEEEEeec----C----C
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN-KTQVIP---LRSAWVMSVAFAQS---GNFVACGGM----D----N 1756 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk-~l~ti~---~Ht~~ItsLafSPd---g~~LaSGS~----D----G 1756 (2004)
-.....++|.|+|++++ +..+|.|++++ .+++ .+..+. ........|+|+|+ +..|.++.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34678999999998555 45669999997 4555 222211 12345889999997 444444432 3 5
Q ss_pred eEEEEEcCCCCCC-CcceEE-EEEec-CccceeeeEEeCCCcEEEeecC--------------CeEEEEECCCCc-----
Q psy8748 1757 MCTVYDLNNRDST-GAAKVI-RELLG-YEGFLSSCRFIDDTTLLTGSGD--------------MKIVTWNLETGQ----- 1814 (2004)
Q Consensus 1757 tIrVWDl~t~~~~-~~~k~i-~sl~g-h~~~Vssvafsdd~~LlSgS~D--------------GtI~IWDl~tg~----- 1814 (2004)
.|..|+....... ...+.+ ..+.. .......+.|.+++.|+++..+ |.|..++.+..-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777776543100 011111 11221 1223456788777776665432 566666654320
Q ss_pred --eeEEeeccccCCeEEEEECC-CCCEEEEEECCC----eEEEEECCC--------C--------eEEEEEecCCCCeEE
Q psy8748 1815 --RIHEVAQAHIGDVVSISLSP-DGQYFVTGSVDK----SCKLWDFRE--------K--------KCVQTFFGHEADVNS 1871 (2004)
Q Consensus 1815 --~i~~il~~h~~~ItsLafSP-dg~~LaSGS~DG----sIrIWDlrs--------~--------k~I~tl~~h~s~Its 1871 (2004)
.......++ .....++|+| +++ |+++.... .|.+..... + .++..+.........
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGV-MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCC-EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCC-EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 011112233 2356799999 555 44443322 243332110 0 122222112345678
Q ss_pred EEEe-------CCCCEEEEEECCCeEEEEEccCC-cee--EEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1872 VCFH-------PSGLAFATGSEDKTARLFDIRAD-QQI--ATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1872 IafS-------Pdg~~LaSgS~DGtIrIWDLrtg-k~i--~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
++|. .+|.++++....+.|...++... +.. ..+. ......+..+++.|||.+.++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence 8884 46767776666788999988753 222 2332 22245688999999997666654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.03 Score=67.49 Aligned_cols=158 Identities=9% Similarity=0.107 Sum_probs=112.1
Q ss_pred CeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEEEecC-----C--CCeEEEEE---eCCCCEEEEEE---------
Q psy8748 1826 DVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKCVQTFFGH-----E--ADVNSVCF---HPSGLAFATGS--------- 1885 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~h-----~--s~ItsIaf---SPdg~~LaSgS--------- 1885 (2004)
...+++|++....|+.++ ..|.|..||...+......... . ..+.++.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 345788988777777777 6899999998765443332221 1 13579999 68877777543
Q ss_pred ----CCCeEEEEEcc---CCceeEEEcCCC-----------CCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCeeeE
Q psy8748 1886 ----EDKTARLFDIR---ADQQIATYLPPN-----------KNSGFTSCAVSSSGRYIFCGSDD-NNVHVWDLLKTTHNG 1946 (2004)
Q Consensus 1886 ----~DGtIrIWDLr---tgk~i~t~~~~~-----------~~s~ItsLafSPdG~~LaSGSsD-GsIrIWDL~tge~l~ 1946 (2004)
.+..|..||+. +++......... .......++..++|+..++++.. +.|..++... +...
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KTVS 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CCEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEEe
Confidence 26779999999 787776653221 11347899999999999999888 8887777543 3333
Q ss_pred EEc------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1947 VLS------GHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1947 tL~------gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
.+. ......+.|+++|+|..|++...+|.+..+|+...
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 221 11223679999999999988877999999998754
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=1.1 Score=58.41 Aligned_cols=231 Identities=7% Similarity=-0.016 Sum_probs=141.3
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEeeC-CCCceEEEEEecCCCEEE-EeecCCeEEEEEcCCCCCCCcceEEEEEecCcc
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQVIPL-RSAWVMSVAFAQSGNFVA-CGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG 1783 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~ti~~-Ht~~ItsLafSPdg~~La-SGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~ 1783 (2004)
+|+.+ ..+.|+..++.+......+.. .-..+.+++|++.+..++ +-..++.|..++++... ... .......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~----~~~--v~~~g~~ 80 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA----LEH--VVEFGLD 80 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEE--EECSSCS
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC----cEE--EEeCCCC
Confidence 44444 456899999987655444332 234678999998665554 44567889888886432 111 1111223
Q ss_pred ceeeeEEe--CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC--CCeEEEEECCCCeEE
Q psy8748 1784 FLSSCRFI--DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV--DKSCKLWDFREKKCV 1859 (2004)
Q Consensus 1784 ~Vssvafs--dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~--DGsIrIWDlrs~k~I 1859 (2004)
....+++. .++.+++-...+.|.+.+++..... .+..........++++|....|+.... .+.|...++......
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~-~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ-VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE-EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE-EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 44556654 3344555556788999998755432 233344456789999997666666653 467888887654432
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1860 QTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1860 ~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
.+...-.....+++++++..|+.+. ..+.|..+|+..... ..+. ........+++.. ++.+++-...+.|...|
T Consensus 160 -~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~--~~l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 160 -TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA--DDLPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp -EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE--ECCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred -EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee--ccCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 2223455788999999766666554 467899999875444 2221 1123345677764 34444444578899999
Q ss_pred CCCCeeeEEEc
Q psy8748 1939 LLKTTHNGVLS 1949 (2004)
Q Consensus 1939 L~tge~l~tL~ 1949 (2004)
..+++....+.
T Consensus 235 k~tg~~~~~l~ 245 (628)
T 4a0p_A 235 KTSGQNRTIIQ 245 (628)
T ss_dssp TTTCCSCEEEE
T ss_pred CCCCCceEEEe
Confidence 87776554443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.11 Score=60.70 Aligned_cols=230 Identities=14% Similarity=0.137 Sum_probs=117.6
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCCceEEEe--eCCCCceEEEEEecCCCEEEEeec----C-----CeEEEEEcCCC
Q psy8748 1702 GDSRHCVSGSLD----GKLIIWDTWTGNKTQVI--PLRSAWVMSVAFAQSGNFVACGGM----D-----NMCTVYDLNNR 1766 (2004)
Q Consensus 1702 PDG~~LASGS~D----GtIrVWDl~Tgk~l~ti--~~Ht~~ItsLafSPdg~~LaSGS~----D-----GtIrVWDl~t~ 1766 (2004)
-++..++.||.+ ..+.+||..+++-...- ...... .+++. .++..++.|+. + ..+.+||..+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 355666777642 46889998777543321 111111 12222 26777777776 2 35778887654
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC-----CeEEEEECCCCceeEEee-ccccCCeEEEEECCCCCEEE
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD-----MKIVTWNLETGQRIHEVA-QAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D-----GtI~IWDl~tg~~i~~il-~~h~~~ItsLafSPdg~~La 1840 (2004)
. ............. .++...++..++.|+.+ ..+..||..+++...... ......-.++.+ ++..++
T Consensus 101 ~----W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv 173 (308)
T 1zgk_A 101 Q----WSPCAPMSVPRNR-IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYA 173 (308)
T ss_dssp E----EEECCCCSSCCBT-CEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred e----EeECCCCCcCccc-cEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEE
Confidence 2 1211111111111 22333355556666543 468899998776432111 111111222223 567777
Q ss_pred EEECC-----CeEEEEECCCCeEEEEE--ecCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEEccCCceeEEEcCCC
Q psy8748 1841 TGSVD-----KSCKLWDFREKKCVQTF--FGHEADVNSVCFHPSGLAFATGSED-----KTARLFDIRADQQIATYLPPN 1908 (2004)
Q Consensus 1841 SGS~D-----GsIrIWDlrs~k~I~tl--~~h~s~ItsIafSPdg~~LaSgS~D-----GtIrIWDLrtgk~i~t~~~~~ 1908 (2004)
.|+.+ ..+.+||..+.+-...- ....... +++.. ++..++.|+.+ ..+.+||+.+.+-...-..+.
T Consensus 174 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 251 (308)
T 1zgk_A 174 VGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 251 (308)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred EeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence 77654 45899998876532211 1111112 22222 66677777764 459999988765432221122
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCee
Q psy8748 1909 KNSGFTSCAVSSSGRYIFCGSDD-----NNVHVWDLLKTTH 1944 (2004)
Q Consensus 1909 ~~s~ItsLafSPdG~~LaSGSsD-----GsIrIWDL~tge~ 1944 (2004)
.......+.+ ++++++.|+.+ ..+.+||..+.+-
T Consensus 252 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 252 RRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp CCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 2222223332 67777777754 4578888876543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.23 Score=58.21 Aligned_cols=228 Identities=11% Similarity=0.114 Sum_probs=114.1
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEec-CccceeeeEEeCCCcEEEeec----CC-------eEEEEECCCCce
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLG-YEGFLSSCRFIDDTTLLTGSG----DM-------KIVTWNLETGQR 1815 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~g-h~~~Vssvafsdd~~LlSgS~----DG-------tI~IWDl~tg~~ 1815 (2004)
.++.|+. .+..||..+.. ... ..... ....-.++...++..++.|+. ++ .+..||..+++.
T Consensus 18 i~~~GG~--~~~~yd~~~~~----W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 90 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENE----CYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW 90 (318)
T ss_dssp EEEECSS--EEEEEETTTTE----EEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred hhhcccc--ceEEECCCCCc----eec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence 4444543 37788876542 111 11111 112223334445556666762 12 277889887764
Q ss_pred eEEee-ccccCCeEEEEECCCCCEEEEEECC-------CeEEEEECCCCeEEEEEecCCCCe-EEEEEeCCCCEEEEEEC
Q psy8748 1816 IHEVA-QAHIGDVVSISLSPDGQYFVTGSVD-------KSCKLWDFREKKCVQTFFGHEADV-NSVCFHPSGLAFATGSE 1886 (2004)
Q Consensus 1816 i~~il-~~h~~~ItsLafSPdg~~LaSGS~D-------GsIrIWDlrs~k~I~tl~~h~s~I-tsIafSPdg~~LaSgS~ 1886 (2004)
..... ...........+ ++..++.|+.+ ..+.+||..+.+-...-....... .+++. .++..++.|+.
T Consensus 91 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~ 167 (318)
T 2woz_A 91 VGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGK 167 (318)
T ss_dssp EECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCE
T ss_pred EECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCC
Confidence 32110 111111222222 56777777754 258889988765432211111111 12222 46666666664
Q ss_pred ------CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEE--EccCCC
Q psy8748 1887 ------DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD-----NNVHVWDLLKTTHNGV--LSGHEN 1953 (2004)
Q Consensus 1887 ------DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD-----GsIrIWDL~tge~l~t--L~gHs~ 1953 (2004)
-..+.+||..+.+-...-..+........+.+ ++++++.|+.+ ..+.+||..+.+-... +.....
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 245 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERS 245 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCB
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 23589999987654333222222222233332 56777777653 3577899876543221 111111
Q ss_pred CeEEEEEcCCCCEEEEEECC--------------CeEEEEECCCCeEEEEE
Q psy8748 1954 RVTSISLSPNGMALVTSSWD--------------QFVKVWQESNTIVWKVL 1990 (2004)
Q Consensus 1954 ~VtsLaFSPDg~~LaSgS~D--------------GtIrIWdlstg~l~k~I 1990 (2004)
....+. -++.+++.||.+ ..+.+||..+. .|..+
T Consensus 246 ~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~-~W~~~ 293 (318)
T 2woz_A 246 SISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK-EWAGM 293 (318)
T ss_dssp SCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT-EEEEE
T ss_pred ceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC-Eehhh
Confidence 112222 256777777754 35889999887 48776
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.32 Score=57.00 Aligned_cols=229 Identities=8% Similarity=0.050 Sum_probs=115.5
Q ss_pred EEEEEeCCCeEEEEECCCCceEE-EeeCCCCceEEEEEecCCCEEEEeec----C-------CeEEEEEcCCCCCCCcce
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQ-VIPLRSAWVMSVAFAQSGNFVACGGM----D-------NMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~-ti~~Ht~~ItsLafSPdg~~LaSGS~----D-------GtIrVWDl~t~~~~~~~k 1773 (2004)
+++.|+ ..+.+||..+++-.. ............+...++..++.|+. + ..+.+||..+.. ..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~----W~ 80 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE----WL 80 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE----EE
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe----EE
Confidence 344555 579999998887543 12211122233333457788888874 1 126677776532 11
Q ss_pred EEEEEecCccceeeeEEeCCCcEEEeecC--------CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEEC-
Q psy8748 1774 VIRELLGYEGFLSSCRFIDDTTLLTGSGD--------MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV- 1844 (2004)
Q Consensus 1774 ~i~sl~gh~~~Vssvafsdd~~LlSgS~D--------GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~- 1844 (2004)
....... ...-.++...++..++.|+.+ ..+.+||..+++............-.+++. .+++.++.|+.
T Consensus 81 ~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 158 (315)
T 4asc_A 81 GMPPLPS-PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKG 158 (315)
T ss_dssp ECCCBSS-CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred ECCCCCc-chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCC
Confidence 1111111 111122333355556666632 458999998875432111011111112222 35667777775
Q ss_pred C-----CeEEEEECCCCeEEEEEecCCCC-eEEEEEeCCCCEEEEEECCC-----eEEEEEccCCceeEEEcCCCCCCCe
Q psy8748 1845 D-----KSCKLWDFREKKCVQTFFGHEAD-VNSVCFHPSGLAFATGSEDK-----TARLFDIRADQQIATYLPPNKNSGF 1913 (2004)
Q Consensus 1845 D-----GsIrIWDlrs~k~I~tl~~h~s~-ItsIafSPdg~~LaSgS~DG-----tIrIWDLrtgk~i~t~~~~~~~s~I 1913 (2004)
+ ..+.+||..+.+-...-...... -.+++. -+++.++.|+.++ .+.+||..+.+-...-..+......
T Consensus 159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 237 (315)
T 4asc_A 159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL 237 (315)
T ss_dssp TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 2 36899998876532211111111 112222 2667777777654 4888998876544332222222222
Q ss_pred EEEEEcCCCCEEEEEeCCC--------------eEEEEECCCCeee
Q psy8748 1914 TSCAVSSSGRYIFCGSDDN--------------NVHVWDLLKTTHN 1945 (2004)
Q Consensus 1914 tsLafSPdG~~LaSGSsDG--------------sIrIWDL~tge~l 1945 (2004)
..+.+ ++++++.|+.++ .+.+||..+.+-.
T Consensus 238 ~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 238 SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 33333 567777777532 4778888766443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.39 Score=57.93 Aligned_cols=224 Identities=14% Similarity=0.131 Sum_probs=120.9
Q ss_pred CceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEE---ecCccceeeeEEeCC----CcEEEeecC-----
Q psy8748 1735 AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIREL---LGYEGFLSSCRFIDD----TTLLTGSGD----- 1802 (2004)
Q Consensus 1735 ~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl---~gh~~~Vssvafsdd----~~LlSgS~D----- 1802 (2004)
.....++|.|+|+++++ ..+|.|.+++ + +. ...+... .........+++.++ +.++++...
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~-g~----~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR-E-GR----LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE-T-TE----EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE-C-CC----ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 34679999999985554 5669999988 2 21 1222211 122345678888875 555554432
Q ss_pred -CeEEEEECCCCce-----eEEeec---cccCCeEEEEECCCCCEEEEEEC-------------CCeEEEEECCCC----
Q psy8748 1803 -MKIVTWNLETGQR-----IHEVAQ---AHIGDVVSISLSPDGQYFVTGSV-------------DKSCKLWDFREK---- 1856 (2004)
Q Consensus 1803 -GtI~IWDl~tg~~-----i~~il~---~h~~~ItsLafSPdg~~LaSGS~-------------DGsIrIWDlrs~---- 1856 (2004)
+.|..|+...+.. +..-.. ........++|.|+|.+.++.+. .|.|.-++....
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 6788888775421 111111 11123468999999976555432 145666665420
Q ss_pred ---------e-EEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeE------EEEEccCCc------------------ee
Q psy8748 1857 ---------K-CVQTFFGHEADVNSVCFHP-SGLAFATGSEDKTA------RLFDIRADQ------------------QI 1901 (2004)
Q Consensus 1857 ---------k-~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DGtI------rIWDLrtgk------------------~i 1901 (2004)
. .+.. .++ .....++|+| ++..+++-...+.+ .+.-+..+. ..
T Consensus 184 npf~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 184 NPFLGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp CTTTTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CcccCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 1 1111 122 2356789999 66655544333321 122222222 11
Q ss_pred EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee------eEEEccCCCCeEEEEEcCCCCEEEEEE
Q psy8748 1902 ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTH------NGVLSGHENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1902 ~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~------l~tL~gHs~~VtsLaFSPDg~~LaSgS 1971 (2004)
..+ ........++| .+|+.+++.-..+.|...++..... ...+.....++.++++.|||.+.++..
T Consensus 262 ~~~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 262 YFW---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEC---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred Eec---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 111 11123456777 4676666665667888887653321 122222346899999999998766654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=5.4 Score=52.05 Aligned_cols=280 Identities=9% Similarity=0.011 Sum_probs=153.6
Q ss_pred ceeEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec--CCeEEEEEcCCCCCCC
Q psy8748 1694 KVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM--DNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~--DGtIrVWDl~t~~~~~ 1770 (2004)
....+++.+.+..| ++-...+.|.+.++........+...-....+++++|....|+.+.. .+.|...+++...
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~--- 157 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE--- 157 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---
Confidence 34578888765544 45555688999998654433333344455789999986555555442 5677777775432
Q ss_pred cceEEEEEecCccceeeeEEeC-CCcEEEe-ecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFID-DTTLLTG-SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSC 1848 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsd-d~~LlSg-S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsI 1848 (2004)
.. .+...-.....+++.. ++.++.+ ...+.|..+|+...... +..........+++.. +..+++-...+.|
T Consensus 158 -~~---~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~--v~~~~l~~P~glav~~-~~ly~tD~~~~~I 230 (628)
T 4a0p_A 158 -RT---TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE--VIADDLPHPFGLTQYQ-DYIYWTDWSRRSI 230 (628)
T ss_dssp -CE---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEEECCSCEEEEEEET-TEEEEEETTTTEE
T ss_pred -eE---EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE--EeeccCCCceEEEEEC-CEEEEecCCCCEE
Confidence 11 1122344566777774 4555444 55688999998765442 2233344556788764 3444444457888
Q ss_pred EEEECCCCeEEEEEecCCC------------------------CeEEEEEe-CCCC-----------------------E
Q psy8748 1849 KLWDFREKKCVQTFFGHEA------------------------DVNSVCFH-PSGL-----------------------A 1880 (2004)
Q Consensus 1849 rIWDlrs~k~I~tl~~h~s------------------------~ItsIafS-Pdg~-----------------------~ 1880 (2004)
...|..+++....+..... ....+|.. |.+. +
T Consensus 231 ~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~ 310 (628)
T 4a0p_A 231 ERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTF 310 (628)
T ss_dssp EEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSE
T ss_pred EEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccce
Confidence 8888765543222211100 11112221 1121 1
Q ss_pred EEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEcc------CCC
Q psy8748 1881 FATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTTHNGVLSG------HEN 1953 (2004)
Q Consensus 1881 LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge~l~tL~g------Hs~ 1953 (2004)
++.+. ...|+-..+.................+..++|++.++.|+.++. .+.|+.++.........+.. ...
T Consensus 311 Ll~s~-~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~ 389 (628)
T 4a0p_A 311 LLFSQ-KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEI 389 (628)
T ss_dssp EEEEE-TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CC
T ss_pred eeeec-cceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccC
Confidence 22221 22333333322111111111122245778999997777766654 67898888754333333322 234
Q ss_pred CeEEEEEcCCCCEEE-EEECCCeEEEEECCCC
Q psy8748 1954 RVTSISLSPNGMALV-TSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1954 ~VtsLaFSPDg~~La-SgS~DGtIrIWdlstg 1984 (2004)
.+.++++...++.|+ +-+..+.|.+.++++.
T Consensus 390 ~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~ 421 (628)
T 4a0p_A 390 QPYDLSIDIYSRYIYWTCEATNVINVTRLDGR 421 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcceEEeeccCCeEEEEcCCCCEEEEEECCCC
Confidence 689999998766555 5556788999988754
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.96 Score=54.68 Aligned_cols=225 Identities=12% Similarity=0.140 Sum_probs=125.2
Q ss_pred CCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEE---ecCccceeeeEEeCC----CcEEEeec----C
Q psy8748 1734 SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIREL---LGYEGFLSSCRFIDD----TTLLTGSG----D 1802 (2004)
Q Consensus 1734 t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl---~gh~~~Vssvafsdd----~~LlSgS~----D 1802 (2004)
-.....++|.|+|++++ +..+|.|++++. .+ . ..+..+ .........+++.++ +.++++.. +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G----~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~ 100 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLISP-SG----K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG 100 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEECS-SC----E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CC----c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence 34568999999998555 455698988863 21 1 222221 122345677888865 56655543 3
Q ss_pred ----CeEEEEECCCC--c-----eeEE-eeccccCCeEEEEECCCCCEEEEEEC-------------CCeEEEEECCCC-
Q psy8748 1803 ----MKIVTWNLETG--Q-----RIHE-VAQAHIGDVVSISLSPDGQYFVTGSV-------------DKSCKLWDFREK- 1856 (2004)
Q Consensus 1803 ----GtI~IWDl~tg--~-----~i~~-il~~h~~~ItsLafSPdg~~LaSGS~-------------DGsIrIWDlrs~- 1856 (2004)
+.|..|+...+ . .+.. +..........++|.|+|.+.++.+. .|.|.-++....
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 67888887654 1 1111 11111123467999999986665432 245666655421
Q ss_pred --------eEEEEEecCCCCeEEEEEeC-CCCEEEEEECCC---eEEEEEccCCc------------------eeEEEcC
Q psy8748 1857 --------KCVQTFFGHEADVNSVCFHP-SGLAFATGSEDK---TARLFDIRADQ------------------QIATYLP 1906 (2004)
Q Consensus 1857 --------k~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DG---tIrIWDLrtgk------------------~i~t~~~ 1906 (2004)
..+.. .++ .....++|+| ++..+++-...+ .|.+.. .+. ....+
T Consensus 181 p~~npf~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~-- 254 (354)
T 3a9g_A 181 PADNPFPNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDT-- 254 (354)
T ss_dssp CTTSSSTTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC--
T ss_pred CCCCCCCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeec--
Confidence 11211 233 2356899999 666544432221 233332 121 11111
Q ss_pred CCCCCCeEEEEEc-------CCCCEEEEEeCCCeEEEEECCCC-eee--EEE-ccCCCCeEEEEEcCCCCEEEEEE
Q psy8748 1907 PNKNSGFTSCAVS-------SSGRYIFCGSDDNNVHVWDLLKT-THN--GVL-SGHENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1907 ~~~~s~ItsLafS-------PdG~~LaSGSsDGsIrIWDL~tg-e~l--~tL-~gHs~~VtsLaFSPDg~~LaSgS 1971 (2004)
.........++|. .+|+++++.-..+.|...++... +.. ..+ .+...++.++++.|||.+.++..
T Consensus 255 ~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 255 GSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 0112456778883 57777777666788999988753 222 223 23356799999999998666654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.17 E-value=3.1 Score=50.44 Aligned_cols=243 Identities=15% Similarity=0.172 Sum_probs=131.7
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE--e----eCCCCceEEEEEecC----CCEEEEe-
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQV--I----PLRSAWVMSVAFAQS----GNFVACG- 1752 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~t--i----~~Ht~~ItsLafSPd----g~~LaSG- 1752 (2004)
....+...-...+.|+|.|||+++++--..|.|++++..+++.... + .........|+++|+ +.+.++-
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 3444555556788999999999777765589999998766654322 2 123456889999995 4443332
Q ss_pred -ecCCeEEEEEcCCCC----CCCcceE-EEEEe-cCccceeeeEEeCCCcEEEeec--------------CCeEEEEECC
Q psy8748 1753 -GMDNMCTVYDLNNRD----STGAAKV-IRELL-GYEGFLSSCRFIDDTTLLTGSG--------------DMKIVTWNLE 1811 (2004)
Q Consensus 1753 -S~DGtIrVWDl~t~~----~~~~~k~-i~sl~-gh~~~Vssvafsdd~~LlSgS~--------------DGtI~IWDl~ 1811 (2004)
..++.|.-|.+.... .....+. ...+. ........+.|.+++.|+++.. .|.|.-++.+
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 234566666665421 1111222 22222 1223445688887766655432 3566666654
Q ss_pred CCc-------eeEEeeccccCCeEEEEECCCCCEEEEE-ECCCeEEEEECCCCe------------------EEEEEecC
Q psy8748 1812 TGQ-------RIHEVAQAHIGDVVSISLSPDGQYFVTG-SVDKSCKLWDFREKK------------------CVQTFFGH 1865 (2004)
Q Consensus 1812 tg~-------~i~~il~~h~~~ItsLafSPdg~~LaSG-S~DGsIrIWDlrs~k------------------~I~tl~~h 1865 (2004)
..- ....+..++. ....++|+|+|.++++- +.|+.=.|.-+..+. ++..+..+
T Consensus 183 G~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~ 261 (347)
T 3das_A 183 GEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD 261 (347)
T ss_dssp SSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred CCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence 320 0111222443 45679999987654432 122211222222111 12223222
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce---eEEEcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1866 EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ---IATYLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1866 ~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~---i~t~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
......++|. +|..++..-..+.|....+..... ...+. ......+..++..|||.++++-+
T Consensus 262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l-~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFL-EGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEES-TTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEee-cCCCCCccEEEECCCCcEEEEEc
Confidence 2355677776 455666665666777777765432 12232 23346788999999987666543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.21 Score=69.58 Aligned_cols=260 Identities=12% Similarity=0.159 Sum_probs=159.6
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.+.+|.|.|+.++..+...+.. --+.-.+|..+.++.-. ..++.|+++++... .+...- ...|.--.|.
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k------lks~~~-~e~VvfWkWi 114 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSK------MKAHTM-TDDVTFWKWI 114 (1630)
T ss_pred CCceEEEEECCCCCCccccccc---chhhccCCCcceEEEec-CCeEEEeehHHhhh------hccccc-CCCceEEEec
Confidence 3457899999887654322211 12334577777666554 67899999976431 122111 2345556676
Q ss_pred CCCcEEEeecCCeEEEEECCCCceeEEeeccc----cCCeEEEEECCCCCEEEEEE-------CCCeEEEEECCCCeEEE
Q psy8748 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAH----IGDVVSISLSPDGQYFVTGS-------VDKSCKLWDFREKKCVQ 1860 (2004)
Q Consensus 1792 dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h----~~~ItsLafSPdg~~LaSGS-------~DGsIrIWDlrs~k~I~ 1860 (2004)
+.+.+...+ +..|+.|++.......+++..| ...|..-..+++.++++..| -.|.+.+|..+.+. .+
T Consensus 115 s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ 192 (1630)
T 1xi4_A 115 SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQ 192 (1630)
T ss_pred CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-ch
Confidence 666655544 4579999997654444444444 45677888899999887655 34788999876543 34
Q ss_pred EEecCCCCeEEEEEeC--C-CCEEEEEEC---CCeEEEEEccCC---cee------EEEcCC-CCCCCeEEEEEcCCCCE
Q psy8748 1861 TFFGHEADVNSVCFHP--S-GLAFATGSE---DKTARLFDIRAD---QQI------ATYLPP-NKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1861 tl~~h~s~ItsIafSP--d-g~~LaSgS~---DGtIrIWDLrtg---k~i------~t~~~~-~~~s~ItsLafSPdG~~ 1924 (2004)
.+.||.+....+.... . ...++.+.. .|+++|.++... ... ..+.++ ....-..++..++.-..
T Consensus 193 ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~ 272 (1630)
T 1xi4_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (1630)
T ss_pred hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCE
Confidence 4556655443333321 1 123333322 378999998543 111 111111 11233457888888888
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1925 LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
++.-+.-|.|++||+.+|.++..-+-....|...+-+....-++.....|.|.--.++..
T Consensus 273 iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 273 VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred EEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 999999999999999999998776655666666555554445666667777776666654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.99 E-value=1.1 Score=54.02 Aligned_cols=240 Identities=10% Similarity=0.078 Sum_probs=128.1
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe-------eCCCCceEEEEEecC---CCEEEEe-ec------
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI-------PLRSAWVMSVAFAQS---GNFVACG-GM------ 1754 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti-------~~Ht~~ItsLafSPd---g~~LaSG-S~------ 1754 (2004)
-...+.|+|.|+|++++.+...|.|++++. ++.....+ .........++|+|+ +..|.++ ..
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 346789999999993444556799999984 34322111 112345789999996 4444433 22
Q ss_pred -CCeEEEEEcCCCCCC-CcceEEE-EEe---cCccceeeeEEeCCCcEEEeecC--------------CeEEEEECCCCc
Q psy8748 1755 -DNMCTVYDLNNRDST-GAAKVIR-ELL---GYEGFLSSCRFIDDTTLLTGSGD--------------MKIVTWNLETGQ 1814 (2004)
Q Consensus 1755 -DGtIrVWDl~t~~~~-~~~k~i~-sl~---gh~~~Vssvafsdd~~LlSgS~D--------------GtI~IWDl~tg~ 1814 (2004)
...|..|+++..... ...+.+. .+. ........+.|.+++.|+++..+ |.|.-+|.+..-
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666666532110 0111111 111 11122456888877777766543 567777765320
Q ss_pred ------------eeEEeeccccCCeEEEEECCCCCEEEEEECCC--eEEEEECCCC------------------------
Q psy8748 1815 ------------RIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK--SCKLWDFREK------------------------ 1856 (2004)
Q Consensus 1815 ------------~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG--sIrIWDlrs~------------------------ 1856 (2004)
.......++ .....++|+|+...|+++.... .=.|.-+..+
T Consensus 176 p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 111111222 3467899999444455544321 1122111111
Q ss_pred -------eEEEEEecCCCCeEEEEEeC-------CCCEEEEEECCCeEEEEEccCCceeEEEc-CCCCCCCeEEEEEcCC
Q psy8748 1857 -------KCVQTFFGHEADVNSVCFHP-------SGLAFATGSEDKTARLFDIRADQQIATYL-PPNKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1857 -------k~I~tl~~h~s~ItsIafSP-------dg~~LaSgS~DGtIrIWDLrtgk~i~t~~-~~~~~s~ItsLafSPd 1921 (2004)
.++..+. +...+..+.|.. +|.++++....+.|...++..++...... .......+..+++.||
T Consensus 255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 0111221 223566788864 46677777678888888887654332211 1122346889999999
Q ss_pred CCEEEEEe-CCCeE
Q psy8748 1922 GRYIFCGS-DDNNV 1934 (2004)
Q Consensus 1922 G~~LaSGS-sDGsI 1934 (2004)
|.++++.. .+|.|
T Consensus 334 G~lyv~td~~~g~I 347 (353)
T 2g8s_A 334 GYLYVLTDESSGEL 347 (353)
T ss_dssp SCEEEEECSTTEEE
T ss_pred CcEEEEEeCCCCEE
Confidence 98666543 34544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.51 Score=57.49 Aligned_cols=183 Identities=16% Similarity=0.162 Sum_probs=107.5
Q ss_pred eeeeEEeCCCcEEEee-------------cCCeEEEEECCCC--ceeEEeecc-----ccCCeEEEEECC--CCC-EEEE
Q psy8748 1785 LSSCRFIDDTTLLTGS-------------GDMKIVTWNLETG--QRIHEVAQA-----HIGDVVSISLSP--DGQ-YFVT 1841 (2004)
Q Consensus 1785 Vssvafsdd~~LlSgS-------------~DGtI~IWDl~tg--~~i~~il~~-----h~~~ItsLafSP--dg~-~LaS 1841 (2004)
...+...+++.+++++ .+|.|.++|.++. +...-...+ .......+.+.+ ++. +|++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3344445555655554 6899999999743 322111111 234677777765 454 4444
Q ss_pred EE-C--CCeEEEEECCCC--e--EEEEEecC-CCCeEEEEEeCCCCEEEEEEC-----------------CCeEEEEEcc
Q psy8748 1842 GS-V--DKSCKLWDFREK--K--CVQTFFGH-EADVNSVCFHPSGLAFATGSE-----------------DKTARLFDIR 1896 (2004)
Q Consensus 1842 GS-~--DGsIrIWDlrs~--k--~I~tl~~h-~s~ItsIafSPdg~~LaSgS~-----------------DGtIrIWDLr 1896 (2004)
+. . +..|.+|++... . .+..+.+. -...+.+.+.++|.+.++... .|.|..+|.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 43 2 456778776542 2 23333332 235789999999987666531 244555554
Q ss_pred CCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC-Cee--eEEEccCCCCeEEEEEcC-CCCEEEEEE
Q psy8748 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLK-TTH--NGVLSGHENRVTSISLSP-NGMALVTSS 1971 (2004)
Q Consensus 1897 tgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~t-ge~--l~tL~gHs~~VtsLaFSP-Dg~~LaSgS 1971 (2004)
++..... ..-...+.++|+||++.++++.. .+.|+.|++.. +.. ...+ ...+..-.+++.+ +|++.+++.
T Consensus 211 -~~~~~~~---~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 211 -NDVRVVA---EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp -TCCEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred -CeEEEee---cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence 3221111 11134578999999998887764 68999999863 322 2233 2346678899999 599888776
Q ss_pred CC
Q psy8748 1972 WD 1973 (2004)
Q Consensus 1972 ~D 1973 (2004)
.+
T Consensus 286 ~~ 287 (355)
T 3sre_A 286 PN 287 (355)
T ss_dssp SC
T ss_pred CC
Confidence 44
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.022 Score=75.35 Aligned_cols=226 Identities=8% Similarity=-0.016 Sum_probs=125.8
Q ss_pred CCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEEe-ecCCeEEEEECCCC---ceeEEeeccccCCeEE
Q psy8748 1755 DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTG-SGDMKIVTWNLETG---QRIHEVAQAHIGDVVS 1829 (2004)
Q Consensus 1755 DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSg-S~DGtI~IWDl~tg---~~i~~il~~h~~~Its 1829 (2004)
.+.|+..++.... ...+......+..++|.. ++.|+.+ ...+.|+.+++... .....+..........
T Consensus 385 ~~~I~~id~~~~~-------~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 385 RHEVRKMTLDRSE-------YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457 (699)
T ss_dssp TTC-CEECTTSCC-------EECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred ccceEEEeCCCCc-------ceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence 3457777765432 111112233456677764 4455544 45678999998751 1111222122233566
Q ss_pred EEECCCCCEE-EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEEccCCceeEEEcC
Q psy8748 1830 ISLSPDGQYF-VTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE--DKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1830 LafSPdg~~L-aSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~--DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
+++.+.+..| ++-...+.|.++++........+.........+++.|.+.+|+.+.. .+.|.++++... ....+..
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~ 536 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVT 536 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESC
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEe
Confidence 8888654444 44445678999998755433333333355678999996655554432 267888887633 2222321
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVLS--GHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL~--gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
........++|++++..|+.+. ..+.|..+++........+. .......+|++..+ .++++....+.|..++..+
T Consensus 537 -~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 537 -ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp -SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred -CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 1123456799999766555554 56789999986433222222 12233456666544 4455555678999999888
Q ss_pred CeEEEEE
Q psy8748 1984 TIVWKVL 1990 (2004)
Q Consensus 1984 g~l~k~I 1990 (2004)
++..+.+
T Consensus 615 G~~~~~i 621 (699)
T 1n7d_A 615 GSDVNLL 621 (699)
T ss_dssp EEEEECC
T ss_pred CCceEEe
Confidence 7655544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.81 E-value=1.1 Score=54.11 Aligned_cols=229 Identities=8% Similarity=0.057 Sum_probs=120.6
Q ss_pred ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEE-EEEecCccceeeeEEeC----CCcEEEeec--------C
Q psy8748 1736 WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI-RELLGYEGFLSSCRFID----DTTLLTGSG--------D 1802 (2004)
Q Consensus 1736 ~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i-~sl~gh~~~Vssvafsd----d~~LlSgS~--------D 1802 (2004)
....|+|.|+|+.++++...|.|++++.+... ....... ............+++.+ ++.++++.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~-~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGL-SAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEE-CCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCce-eeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46789999999934455567999988753211 0000000 01111233456778876 355554432 2
Q ss_pred CeEEEEECCCCc----eeEEeecc------ccCCeEEEEECCCCCEEEEEEC-------------CCeEEEEECCCC---
Q psy8748 1803 MKIVTWNLETGQ----RIHEVAQA------HIGDVVSISLSPDGQYFVTGSV-------------DKSCKLWDFREK--- 1856 (2004)
Q Consensus 1803 GtI~IWDl~tg~----~i~~il~~------h~~~ItsLafSPdg~~LaSGS~-------------DGsIrIWDlrs~--- 1856 (2004)
..|..|+...+. ....++.. .......++|.|||.+.++.+. .|.|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 357777765431 11112111 1112457999999965554433 246777776432
Q ss_pred -----------eEEEEEecCCCCeEEEEEeC-CCCEEEEEECCC--eEEEEEccCCce----------------------
Q psy8748 1857 -----------KCVQTFFGHEADVNSVCFHP-SGLAFATGSEDK--TARLFDIRADQQ---------------------- 1900 (2004)
Q Consensus 1857 -----------k~I~tl~~h~s~ItsIafSP-dg~~LaSgS~DG--tIrIWDLrtgk~---------------------- 1900 (2004)
..+.. .++ .....++|+| +|. |+++.... .=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCcCCCCCCccEEE-EcC-cCccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 11111 122 3467899999 554 44443221 112222211111
Q ss_pred ---------eEEEcCCCCCCCeEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCeeeEE--E-ccCCCCeEEEEEc
Q psy8748 1901 ---------IATYLPPNKNSGFTSCAVSS-------SGRYIFCGSDDNNVHVWDLLKTTHNGV--L-SGHENRVTSISLS 1961 (2004)
Q Consensus 1901 ---------i~t~~~~~~~s~ItsLafSP-------dG~~LaSGSsDGsIrIWDL~tge~l~t--L-~gHs~~VtsLaFS 1961 (2004)
...+ .+......+.|.. +|+++++.-..+.|...++..++.... + .....++.++++.
T Consensus 255 ~~~~~~~~P~~~~---~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 255 EIVAGTEQPVFYW---KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp SSCTTSCCCSEEE---SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCCccCCeEEe---CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 0011 1113456677763 467777766778888888876654332 2 2334689999999
Q ss_pred CCCCEEEEEE
Q psy8748 1962 PNGMALVTSS 1971 (2004)
Q Consensus 1962 PDg~~LaSgS 1971 (2004)
|||.+.++..
T Consensus 332 pdG~lyv~td 341 (353)
T 2g8s_A 332 PDGYLYVLTD 341 (353)
T ss_dssp TTSCEEEEEC
T ss_pred CCCcEEEEEe
Confidence 9998666543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=6.1 Score=48.07 Aligned_cols=197 Identities=10% Similarity=0.136 Sum_probs=116.1
Q ss_pred ccceeEEEEeCCCCEEEEEe------------CCCeEEEEECCC--CceEE-EeeC-----CCCceEEEEEec--CCC-E
Q psy8748 1692 INKVNSVHYSGDSRHCVSGS------------LDGKLIIWDTWT--GNKTQ-VIPL-----RSAWVMSVAFAQ--SGN-F 1748 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS------------~DGtIrVWDl~T--gk~l~-ti~~-----Ht~~ItsLafSP--dg~-~ 1748 (2004)
..+.-++++.|+|..+++++ .+|.|.++|..+ ++... .+.+ .......+.+.+ ++. +
T Consensus 49 ~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 49 DNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 34566778888876555542 689999999874 22211 2222 123577888766 343 3
Q ss_pred EEEe-ec--CCeEEEEEcCCCCCCCcceEEEEEecC-ccceeeeEEeCCCcEEEeec------------------CCeEE
Q psy8748 1749 VACG-GM--DNMCTVYDLNNRDSTGAAKVIRELLGY-EGFLSSCRFIDDTTLLTGSG------------------DMKIV 1806 (2004)
Q Consensus 1749 LaSG-S~--DGtIrVWDl~t~~~~~~~k~i~sl~gh-~~~Vssvafsdd~~LlSgS~------------------DGtI~ 1806 (2004)
|+++ .. +..|.+|+++... ..........+. -.....+...+++.+++++. .|.|+
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~--~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEE--KSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTT--TEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCC--CEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 4443 22 5688899887542 123334444432 22345666666666555432 35666
Q ss_pred EEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCC-CeE--EEEEecCCCCeEEEEEeC-CCCEE
Q psy8748 1807 TWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFRE-KKC--VQTFFGHEADVNSVCFHP-SGLAF 1881 (2004)
Q Consensus 1807 IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs-~k~--I~tl~~h~s~ItsIafSP-dg~~L 1881 (2004)
.+|.. + .... ...-.....++|+||++.++++. ..+.|+.|++.. +.. ...+ ...+..-.+++.+ +|++.
T Consensus 207 r~d~~--~-~~~~-~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 207 YYSPN--D-VRVV-AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLW 281 (355)
T ss_dssp EECTT--C-CEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEE
T ss_pred EEECC--e-EEEe-ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEE
Confidence 66653 2 2122 23345578999999999887775 467899999863 322 2233 3356678899999 59877
Q ss_pred EEEECC-CeEEEEEc
Q psy8748 1882 ATGSED-KTARLFDI 1895 (2004)
Q Consensus 1882 aSgS~D-GtIrIWDL 1895 (2004)
+++..+ +.|..||.
T Consensus 282 va~~~~g~~v~~~~P 296 (355)
T 3sre_A 282 VGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEEESCHHHHHSCCT
T ss_pred EEecCCceEEEEECC
Confidence 766544 34544544
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.99 Score=52.87 Aligned_cols=229 Identities=11% Similarity=0.122 Sum_probs=112.5
Q ss_pred EEEEEeCCCeEEEEECCCCceEEE-eeCCCCceEEEEEecCCCEEEEeec----CC-------eEEEEEcCCCCCCCcce
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQV-IPLRSAWVMSVAFAQSGNFVACGGM----DN-------MCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~t-i~~Ht~~ItsLafSPdg~~LaSGS~----DG-------tIrVWDl~t~~~~~~~k 1773 (2004)
.++.|+. .+..||..+++-... ...........+...++..++.|+. ++ .+..||..+.. ..
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~----W~ 91 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE----WV 91 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE----EE
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc----EE
Confidence 3444543 488999888765442 1211112222233456778888873 12 16667765432 11
Q ss_pred EEEEEecCccceeeeEEeCCCcEEEeecC-------CeEEEEECCCCceeEEeecc-ccCCeEEEEECCCCCEEEEEEC-
Q psy8748 1774 VIRELLGYEGFLSSCRFIDDTTLLTGSGD-------MKIVTWNLETGQRIHEVAQA-HIGDVVSISLSPDGQYFVTGSV- 1844 (2004)
Q Consensus 1774 ~i~sl~gh~~~Vssvafsdd~~LlSgS~D-------GtI~IWDl~tg~~i~~il~~-h~~~ItsLafSPdg~~LaSGS~- 1844 (2004)
......... .-.++...++..++.|+.+ ..+.+||..+++........ ....- +++. .+++.++.|+.
T Consensus 92 ~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~ 168 (318)
T 2woz_A 92 GLPPLPSAR-CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKT 168 (318)
T ss_dssp ECSCBSSCB-CSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEE
T ss_pred ECCCCCccc-cccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCC
Confidence 111111111 1222333455566666653 35888999877644221000 01111 1222 35666677664
Q ss_pred -----CCeEEEEECCCCeEEEEEecCCC-CeEEEEEeCCCCEEEEEECC-----CeEEEEEccCCceeEEEcCCCCCCCe
Q psy8748 1845 -----DKSCKLWDFREKKCVQTFFGHEA-DVNSVCFHPSGLAFATGSED-----KTARLFDIRADQQIATYLPPNKNSGF 1913 (2004)
Q Consensus 1845 -----DGsIrIWDlrs~k~I~tl~~h~s-~ItsIafSPdg~~LaSgS~D-----GtIrIWDLrtgk~i~t~~~~~~~s~I 1913 (2004)
-..+.+||..+.+-...-..... .-.+++. -++..++.|+.+ ..+.+||+.+.+-...-..+......
T Consensus 169 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 247 (318)
T 2woz_A 169 DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI 247 (318)
T ss_dssp SSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC
T ss_pred CCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 23589999987753322111111 1112222 256677777654 34778998776543222112222222
Q ss_pred EEEEEcCCCCEEEEEeCC--------------CeEEEEECCCCeeeE
Q psy8748 1914 TSCAVSSSGRYIFCGSDD--------------NNVHVWDLLKTTHNG 1946 (2004)
Q Consensus 1914 tsLafSPdG~~LaSGSsD--------------GsIrIWDL~tge~l~ 1946 (2004)
..+. .++++++.|+.+ ..+.+||..+.+-..
T Consensus 248 ~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 248 SLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp EEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred EEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 2222 356777777654 357888887765443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.28 E-value=3.3 Score=50.18 Aligned_cols=233 Identities=15% Similarity=0.183 Sum_probs=126.1
Q ss_pred eeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEE----ecCccceeeeEEeCC----CcEEEe--
Q psy8748 1730 IPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIREL----LGYEGFLSSCRFIDD----TTLLTG-- 1799 (2004)
Q Consensus 1730 i~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl----~gh~~~Vssvafsdd----~~LlSg-- 1799 (2004)
+...-.....|+|.|+|..+++--..|.|++++...+. ...+... .........+++.++ +.+++.
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~----~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR----KTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC----EEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc----EeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 33334457899999999977776658989888754332 1222211 123455677888753 445443
Q ss_pred -ecCCeEEEEECCCCc----------eeEE-eeccccCCeEEEEECCCCCEEEEEEC-------------CCeEEEEECC
Q psy8748 1800 -SGDMKIVTWNLETGQ----------RIHE-VAQAHIGDVVSISLSPDGQYFVTGSV-------------DKSCKLWDFR 1854 (2004)
Q Consensus 1800 -S~DGtI~IWDl~tg~----------~i~~-il~~h~~~ItsLafSPdg~~LaSGS~-------------DGsIrIWDlr 1854 (2004)
..++.|.-|....+. .+.. +..........|+|.|||.+.++.+. .|.|.-++..
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 245667777665421 1111 11111223457999999987666542 3555555544
Q ss_pred CC---------eEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCce------------------eEEEcC
Q psy8748 1855 EK---------KCVQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQ------------------IATYLP 1906 (2004)
Q Consensus 1855 s~---------k~I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~------------------i~t~~~ 1906 (2004)
.. ..+.. .+|. ....++|+|+|.++++-. .|+.=.|.-+..+.. +..+.
T Consensus 183 G~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~- 259 (347)
T 3das_A 183 GEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS- 259 (347)
T ss_dssp SSBCTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC-
T ss_pred CCccCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC-
Confidence 22 11211 2443 356899999877555432 222222222222211 11110
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee----eEEEccCCCCeEEEEEcCCCCEEEEEE
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTH----NGVLSGHENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~----l~tL~gHs~~VtsLaFSPDg~~LaSgS 1971 (2004)
.+......++|. +|..++..-..+.|....+..... ...+.+..+++.+|+..|||.++++.+
T Consensus 260 -~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 260 -TDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp -TTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred -CCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 111234566666 456666555566777777654432 233444557899999999998766654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.045 Score=66.25 Aligned_cols=190 Identities=13% Similarity=0.055 Sum_probs=105.7
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCC-CCceEEEEE--ec-CCCEEEEe-ecCCeEEEEEcCCCCCCCcceEEEEEe
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLR-SAWVMSVAF--AQ-SGNFVACG-GMDNMCTVYDLNNRDSTGAAKVIRELL 1779 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~H-t~~ItsLaf--SP-dg~~LaSG-S~DGtIrVWDl~t~~~~~~~k~i~sl~ 1779 (2004)
..++.++.||.|.-.|..+|+....++.. ..++....- .+ ++..++.. +.||.+..++..++. .+......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~----~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL----QKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE----EEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc----EEeeeccc
Confidence 46888999999999999999999988754 122221110 01 22334343 579999999876542 11111111
Q ss_pred cCccceeeeEE------------eCCCcEEEeecCCeEEEEECCCCceeEEeeccccCC------eEEEEEC-----CCC
Q psy8748 1780 GYEGFLSSCRF------------IDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD------VVSISLS-----PDG 1836 (2004)
Q Consensus 1780 gh~~~Vssvaf------------sdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~------ItsLafS-----Pdg 1836 (2004)
... ....+.. ..++.+++|+.+|.+...|..+|+.+.....+.... ..|.... ..+
T Consensus 87 ~lv-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 87 QLV-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp HHH-TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred cce-eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 000 0000111 156778999999999999999999987764332211 1111111 124
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEE-----ecCCCC--eE-EEEEeCCCCEEEEEECCCeEEEEEccCCceeE
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKKCVQTF-----FGHEAD--VN-SVCFHPSGLAFATGSEDKTARLFDIRADQQIA 1902 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k~I~tl-----~~h~s~--It-sIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~ 1902 (2004)
..++.|..+..+.+.+ ++++ +..+ ...... +. +-..+.++.+ ++++.||.|.-+|..+|....
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 5677777777777766 3443 1111 111000 00 0001123555 457889999999998888776
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.79 Score=56.95 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=97.1
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeEEEEEecC----CCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc---------
Q psy8748 1833 SPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGH----EADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ--------- 1899 (2004)
Q Consensus 1833 SPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h----~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk--------- 1899 (2004)
..+|..++++- ++.||..++......+.+... -..|..+..+|+|++++..+ +..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 34566666554 578888887744444444432 23688899999999999886 5579998876321
Q ss_pred ---eeEEEcCCC----CCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCe--eeEEEc---------cCCCCeEEE
Q psy8748 1900 ---QIATYLPPN----KNSGFTSCAVSS---SGRYIFCGSDDNNVHVWDLLKTT--HNGVLS---------GHENRVTSI 1958 (2004)
Q Consensus 1900 ---~i~t~~~~~----~~s~ItsLafSP---dG~~LaSGSsDGsIrIWDL~tge--~l~tL~---------gHs~~VtsL 1958 (2004)
....+.... ...+|..+.|+| .|..|++-..|+.|++||+.... +. .+. .+...|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 112222111 246799999999 46789999999999999997521 22 222 233678999
Q ss_pred EEcCCCCEEEEEE--CCCeEEEE
Q psy8748 1959 SLSPNGMALVTSS--WDQFVKVW 1979 (2004)
Q Consensus 1959 aFSPDg~~LaSgS--~DGtIrIW 1979 (2004)
+|..++-.|...+ .+|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9998877777755 66766554
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.59 Score=55.54 Aligned_cols=236 Identities=9% Similarity=0.018 Sum_probs=112.5
Q ss_pred CCCEEEEEeCC-CeEEEEECCC--CceEEEeeC-C--CCceEEEEEecCCCEEEEeec-C---------CeEEEEEcCCC
Q psy8748 1703 DSRHCVSGSLD-GKLIIWDTWT--GNKTQVIPL-R--SAWVMSVAFAQSGNFVACGGM-D---------NMCTVYDLNNR 1766 (2004)
Q Consensus 1703 DG~~LASGS~D-GtIrVWDl~T--gk~l~ti~~-H--t~~ItsLafSPdg~~LaSGS~-D---------GtIrVWDl~t~ 1766 (2004)
+++.++.||.+ ..+.++|..+ .+-. .+.. . ...-.+++. -++..++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEE-ECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCee-ECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666666643 5688899864 3222 2211 1 111122222 25777777776 2 35788887654
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC---------------------------------------CeEEE
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD---------------------------------------MKIVT 1807 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D---------------------------------------GtI~I 1807 (2004)
. .............-.++...++..++.|+.+ ..+.+
T Consensus 97 ~----W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 97 S----WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp E----EEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred c----EEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 2 2221111111111122233455566777654 57999
Q ss_pred EECCCCceeEEeeccccCCe-EEEEECCCCCEEEEEEC------CCeEEEEEC--CCCeEEE--EEecCCCCeEEEEEeC
Q psy8748 1808 WNLETGQRIHEVAQAHIGDV-VSISLSPDGQYFVTGSV------DKSCKLWDF--REKKCVQ--TFFGHEADVNSVCFHP 1876 (2004)
Q Consensus 1808 WDl~tg~~i~~il~~h~~~I-tsLafSPdg~~LaSGS~------DGsIrIWDl--rs~k~I~--tl~~h~s~ItsIafSP 1876 (2004)
||..+.+............. .+++.. +++.++.|+. ...+.+||+ .+.+-.. .+........+.+...
T Consensus 173 yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~ 251 (357)
T 2uvk_A 173 FDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGIS 251 (357)
T ss_dssp EETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEE
T ss_pred EeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEE
Confidence 99988765422211111111 223332 5666666653 245777887 3333211 1111111111112233
Q ss_pred CCCEEEEEECC----------------------CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCC--
Q psy8748 1877 SGLAFATGSED----------------------KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN-- 1932 (2004)
Q Consensus 1877 dg~~LaSgS~D----------------------GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDG-- 1932 (2004)
++..++.|+.+ ..+.+||+.+.+-...-..+.......++ ..++++++.|+.++
T Consensus 252 ~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~ 329 (357)
T 2uvk_A 252 NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGG 329 (357)
T ss_dssp TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGG
T ss_pred CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCC
Confidence 56677777632 25788998765443322222222222333 34678888888653
Q ss_pred ----eEEEEECCCCeeeEE
Q psy8748 1933 ----NVHVWDLLKTTHNGV 1947 (2004)
Q Consensus 1933 ----sIrIWDL~tge~l~t 1947 (2004)
.|.++++++++.+..
T Consensus 330 ~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 330 KAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CEEEEEEEEEC-CCSCEEE
T ss_pred CEeeeEEEEEEcCcEeEee
Confidence 366668777665544
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.34 Score=58.63 Aligned_cols=192 Identities=11% Similarity=0.007 Sum_probs=101.5
Q ss_pred CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecC-ccceeeeEE---eCCCcEEEe--ecCCeEEEEECCCCceeEEe
Q psy8748 1746 GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY-EGFLSSCRF---IDDTTLLTG--SGDMKIVTWNLETGQRIHEV 1819 (2004)
Q Consensus 1746 g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh-~~~Vssvaf---sdd~~LlSg--S~DGtI~IWDl~tg~~i~~i 1819 (2004)
+..+++++.||.|..+|..+++.. -.+... ......... ..++.++++ +.||.|+.+|..+|......
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~------W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHII------WSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEE------EEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEE------EEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 357888899999999988765322 222111 011111100 012344443 68999999999888654333
Q ss_pred eccc---cCCeEE---EEE-C----CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC--C-----eEEEEEe-----C
Q psy8748 1820 AQAH---IGDVVS---ISL-S----PDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA--D-----VNSVCFH-----P 1876 (2004)
Q Consensus 1820 l~~h---~~~Its---Laf-S----Pdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s--~-----ItsIafS-----P 1876 (2004)
.... ..++.. ..+ . ..+..+++|+.+|.+...|.++|+.+..+..... . ..|.... .
T Consensus 84 ~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 84 SIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp EHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred ccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 2111 111111 000 0 1456789999999999999999999988853311 0 1111111 1
Q ss_pred CCCEEEEEECCCeEEEEEccCCceeEEE-----cCCCCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q psy8748 1877 SGLAFATGSEDKTARLFDIRADQQIATY-----LPPNKNSGFT-SCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNG 1946 (2004)
Q Consensus 1877 dg~~LaSgS~DGtIrIWDLrtgk~i~t~-----~~~~~~s~It-sLafSPdG~~LaSGSsDGsIrIWDL~tge~l~ 1946 (2004)
.+..++.+..+..+.+.+ ++|+ ...+ ........+. .-..+.|+.+ ++++.||.|.-+|..+|..+.
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 235677777777777766 4443 2111 0000000000 0001224566 457889999999988888765
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=94.59 E-value=1.2 Score=55.49 Aligned_cols=135 Identities=18% Similarity=0.258 Sum_probs=91.7
Q ss_pred CCeEEEEECCCCceeEEeeccc---cCCeEEEEECCCCCEEEEEECCCeEEEEECCCCe------------EEEEEec--
Q psy8748 1802 DMKIVTWNLETGQRIHEVAQAH---IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKK------------CVQTFFG-- 1864 (2004)
Q Consensus 1802 DGtI~IWDl~tg~~i~~il~~h---~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k------------~I~tl~~-- 1864 (2004)
++.|+.-++..+...+.....+ -..|..+..+|+|++++..+ +..|.|..+..+. ..+.+.-
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 4677777776444332222221 23688899999999999987 4588888877321 1223321
Q ss_pred ----CCCCeEEEEEeC---CCCEEEEEECCCeEEEEEccCCce-eEE-------EcCCCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1865 ----HEADVNSVCFHP---SGLAFATGSEDKTARLFDIRADQQ-IAT-------YLPPNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1865 ----h~s~ItsIafSP---dg~~LaSgS~DGtIrIWDLrtgk~-i~t-------~~~~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
...+|..+.|+| .+..+++-..|+.|++||+..... ... +........+.+++|..+|-.|++.+
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 256799999999 456899999999999999985221 112 22223336789999999988888766
Q ss_pred --CCCeEEEE
Q psy8748 1930 --DDNNVHVW 1937 (2004)
Q Consensus 1930 --sDGsIrIW 1937 (2004)
.+|.|+-.
T Consensus 199 ~t~~GDIYAl 208 (452)
T 3pbp_A 199 TTEGGDIFAF 208 (452)
T ss_dssp CTTSCEEEEE
T ss_pred cCCCCCEEEE
Confidence 78888754
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=94.56 E-value=13 Score=46.37 Aligned_cols=232 Identities=11% Similarity=0.041 Sum_probs=137.0
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEE
Q psy8748 1697 SVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIR 1776 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~ 1776 (2004)
+.-.+|..+.+|--. ..++.|+|+++..++..+.... .|.--.|-.+. .|+..+ +..|+-|+++... .+.+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s-----~P~k 140 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGES-----QPVK 140 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EEEEEC-SSEEEEEESSSSC-----CCEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eEEEEc-CCeeEEecccCCC-----Cchh
Confidence 445567777666554 6799999999999998877654 46666675443 344333 4569999996521 2223
Q ss_pred EEecCcc--ceeeeEE--eCC-Cc-EEEee------cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC---CEEEE
Q psy8748 1777 ELLGYEG--FLSSCRF--IDD-TT-LLTGS------GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG---QYFVT 1841 (2004)
Q Consensus 1777 sl~gh~~--~Vssvaf--sdd-~~-LlSgS------~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg---~~LaS 1841 (2004)
.+..|.. ...-+.| .++ .. +++|- -.|.+.+|..+.+.. ....+|.+....+.+..+. +.++.
T Consensus 141 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--Q~ieGhaa~F~~~~~~g~~~~~~lf~f 218 (494)
T 1bpo_A 141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIEGHAASFAQFKMEGNAEESTLFCF 218 (494)
T ss_dssp EEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE--EEECCSEEEEEEEECTTCSSEEEEEEE
T ss_pred heecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc--chheeeeeeeEEEecCCCCCCceEEEE
Confidence 3333221 1112222 222 22 22222 247889999876654 4556776655544443211 24444
Q ss_pred EECC---CeEEEEECCCC--------e-EEEEEec---CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC
Q psy8748 1842 GSVD---KSCKLWDFREK--------K-CVQTFFG---HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1842 GS~D---GsIrIWDlrs~--------k-~I~tl~~---h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
+... +.++|.++... + .+..+.. ..+-..++..++.-..++.-+.-|.|++||+.++.++..-..
T Consensus 219 a~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp EECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc
Confidence 4432 78999998542 1 1111111 234456888898888899999999999999999999877643
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
.. ..|...+.+....=+++....|.|.-..+..
T Consensus 299 s~--~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 299 SG--ETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp CS--SCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred cC--CceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 33 3444444444444444445666666555543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.14 E-value=12 Score=46.69 Aligned_cols=108 Identities=14% Similarity=0.199 Sum_probs=60.3
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE--EeeC------CCCceEEEEEecC---CCEEEEeec------
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQ--VIPL------RSAWVMSVAFAQS---GNFVACGGM------ 1754 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~--ti~~------Ht~~ItsLafSPd---g~~LaSGS~------ 1754 (2004)
-...+.|+|.|+|+++++-...+.|++++..+++... .+.. .......|+|+|+ +..|.++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4466799999999977765544579988866565432 2221 2355779999995 444444332
Q ss_pred -------CCeEEEEEcCCCCCC-CcceEEE-EEec-CccceeeeEEeCCCcEEEe
Q psy8748 1755 -------DNMCTVYDLNNRDST-GAAKVIR-ELLG-YEGFLSSCRFIDDTTLLTG 1799 (2004)
Q Consensus 1755 -------DGtIrVWDl~t~~~~-~~~k~i~-sl~g-h~~~Vssvafsdd~~LlSg 1799 (2004)
...|.-|+.+..... ...+.+. .+.. .......+.|.+++.|+++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence 234555555432110 1111121 1221 2234677888877665554
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=1.4 Score=58.23 Aligned_cols=196 Identities=10% Similarity=0.121 Sum_probs=105.6
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCCceEEEe-e------CCCCceEEEEEec-CCCEEEEeecCC------eEEEEEc
Q psy8748 1702 GDSRHCVSGSLD----GKLIIWDTWTGNKTQVI-P------LRSAWVMSVAFAQ-SGNFVACGGMDN------MCTVYDL 1763 (2004)
Q Consensus 1702 PDG~~LASGS~D----GtIrVWDl~Tgk~l~ti-~------~Ht~~ItsLafSP-dg~~LaSGS~DG------tIrVWDl 1763 (2004)
-++..++.||.+ ..+.+||..+++-...- . .....-.+++... ++..++.||.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777777754 46888998887654433 2 1111123334443 778888887643 4677887
Q ss_pred CCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCC--eEEEEECCCCceeEEee----ccccCCeEEEEECCC-C
Q psy8748 1764 NNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM--KIVTWNLETGQRIHEVA----QAHIGDVVSISLSPD-G 1836 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DG--tI~IWDl~tg~~i~~il----~~h~~~ItsLafSPd-g 1836 (2004)
.+.. ................+.+.++..++.|+.++ .+.+||..++....... ........++.+..+ +
T Consensus 476 ~t~~----W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 476 KTRE----WSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSK 551 (695)
T ss_dssp TTTE----EEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred CCCc----EEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCC
Confidence 6532 22221111111122222223666677777654 69999998876542221 011112233555554 6
Q ss_pred CEEEEEEC--C-----CeEEEEECCCCe------EEEEEe--cCCCCeEEEEEeCCCCEEEEEECC--------CeEEEE
Q psy8748 1837 QYFVTGSV--D-----KSCKLWDFREKK------CVQTFF--GHEADVNSVCFHPSGLAFATGSED--------KTARLF 1893 (2004)
Q Consensus 1837 ~~LaSGS~--D-----GsIrIWDlrs~k------~I~tl~--~h~s~ItsIafSPdg~~LaSgS~D--------GtIrIW 1893 (2004)
+.++.||. + +.+.+||+.+.. -..... .....-.+++...++..++.|+.+ ..+.+|
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 67777765 2 358999988766 111111 111111233334446777777743 459999
Q ss_pred EccCCcee
Q psy8748 1894 DIRADQQI 1901 (2004)
Q Consensus 1894 DLrtgk~i 1901 (2004)
|..+.+-.
T Consensus 632 d~~t~~W~ 639 (695)
T 2zwa_A 632 DPLSETLT 639 (695)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 99876544
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=1.4 Score=58.11 Aligned_cols=197 Identities=16% Similarity=0.197 Sum_probs=104.0
Q ss_pred cCCCEEEEeecC----CeEEEEEcCCCCCCCcceEEE-EE----ecCccceeeeEEe--CCCcEEEeecC------CeEE
Q psy8748 1744 QSGNFVACGGMD----NMCTVYDLNNRDSTGAAKVIR-EL----LGYEGFLSSCRFI--DDTTLLTGSGD------MKIV 1806 (2004)
Q Consensus 1744 Pdg~~LaSGS~D----GtIrVWDl~t~~~~~~~k~i~-sl----~gh~~~Vssvafs--dd~~LlSgS~D------GtI~ 1806 (2004)
.++..++.||.+ ..+.+||..+.. ..... .. ......-.++... ++..++.|+.+ ..+.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~----W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDK----IDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSC----EEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCe----EEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEE
Confidence 456677777653 357777776542 22222 10 0111122233334 55556666643 3588
Q ss_pred EEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC--eEEEEECCCCeEEEEEe-----cCCCCeEEEEEeCC-C
Q psy8748 1807 TWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK--SCKLWDFREKKCVQTFF-----GHEADVNSVCFHPS-G 1878 (2004)
Q Consensus 1807 IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG--sIrIWDlrs~k~I~tl~-----~h~s~ItsIafSPd-g 1878 (2004)
+||..+++....-.......-.+++...+++.++.||.++ .+.+||..+..-...-. .......++.+..+ +
T Consensus 472 ~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 472 IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSK 551 (695)
T ss_dssp EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCC
Confidence 9999886543211111111122333334788888888655 69999998775332211 11122233555555 6
Q ss_pred CEEEEEEC--C-----CeEEEEEccCCc------eeEEEcC-CCCCCCeEEEEEcCCCCEEEEEeC--------CCeEEE
Q psy8748 1879 LAFATGSE--D-----KTARLFDIRADQ------QIATYLP-PNKNSGFTSCAVSSSGRYIFCGSD--------DNNVHV 1936 (2004)
Q Consensus 1879 ~~LaSgS~--D-----GtIrIWDLrtgk------~i~t~~~-~~~~s~ItsLafSPdG~~LaSGSs--------DGsIrI 1936 (2004)
..++.|+. + +.+.+||+.+.. -...... ......... +...++++++.|+. ...+.+
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI-KYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE-EEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE-EEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 67777765 2 358999998776 1111111 111122223 33333777777774 345999
Q ss_pred EECCCCeee
Q psy8748 1937 WDLLKTTHN 1945 (2004)
Q Consensus 1937 WDL~tge~l 1945 (2004)
||..+.+-.
T Consensus 631 yd~~t~~W~ 639 (695)
T 2zwa_A 631 LDPLSETLT 639 (695)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 999876544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=1.2 Score=50.93 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=97.7
Q ss_pred cEEEeecCCeEEEEECCCCc------eeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE------EEEE
Q psy8748 1795 TLLTGSGDMKIVTWNLETGQ------RIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC------VQTF 1862 (2004)
Q Consensus 1795 ~LlSgS~DGtI~IWDl~tg~------~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~------I~tl 1862 (2004)
.|++...| +++.=...++. ...++-...-..++.++|+|+|.+.++ .+|.++-.+..+... -..+
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence 45555555 65555444443 122221211246789999999886666 678877777644211 1111
Q ss_pred e-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCcee-----EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy8748 1863 F-GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQI-----ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHV 1936 (2004)
Q Consensus 1863 ~-~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i-----~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrI 1936 (2004)
- .--....++.|.|+|.+.++ .||.|+-++-.+...- ........-..+..+.+.|+|.+.++. ||.++-
T Consensus 83 G~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 83 GNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp ECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred cccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 0 00111478899999987776 5699988875321110 011111122468999999999988877 777554
Q ss_pred EECCCCe------eeEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1937 WDLLKTT------HNGVL-SGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1937 WDL~tge------~l~tL-~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
+...... ....+ .........+.|.+++.+.+.. +| ++|..
T Consensus 159 ~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 159 ALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp ECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEE
T ss_pred cCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEec
Confidence 3322111 11111 1233345557788888766665 66 44444
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.07 E-value=26 Score=42.22 Aligned_cols=279 Identities=8% Similarity=-0.034 Sum_probs=133.2
Q ss_pred CEEEEEeCCCeEEEEECCC-CceEEEe--eCCCCceEEEEEec-CCCEEEEeecCC--eEEEEEcCCCCCCCcceEEEE-
Q psy8748 1705 RHCVSGSLDGKLIIWDTWT-GNKTQVI--PLRSAWVMSVAFAQ-SGNFVACGGMDN--MCTVYDLNNRDSTGAAKVIRE- 1777 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~T-gk~l~ti--~~Ht~~ItsLafSP-dg~~LaSGS~DG--tIrVWDl~t~~~~~~~k~i~s- 1777 (2004)
..|..|+..| +.+++... +..-... ......|.+|+++| +...+.+++..| .-.||....+.. .......
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~--tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGG--NWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTS--CCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCC--CceECCcc
Confidence 3677777776 54554332 2222222 23346799999998 334444444444 012333332211 1111111
Q ss_pred --Eec--------CccceeeeEEeC---CCcEEEeecCCeEEEEECCCCceeEEeec------------------cccCC
Q psy8748 1778 --LLG--------YEGFLSSCRFID---DTTLLTGSGDMKIVTWNLETGQRIHEVAQ------------------AHIGD 1826 (2004)
Q Consensus 1778 --l~g--------h~~~Vssvafsd---d~~LlSgS~DGtI~IWDl~tg~~i~~il~------------------~h~~~ 1826 (2004)
+.. ....+.++.+.+ .+.+++++..+.|...+-. ++.-..+.. .....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCc
Confidence 010 112455666653 5678887777776665432 222212210 01235
Q ss_pred eEEEEECCC-CCEEEEEECCCeEEEEECCCCeEEEEEec-C------------CCCeEEEEEeCC-CCEEEEEECCCeEE
Q psy8748 1827 VVSISLSPD-GQYFVTGSVDKSCKLWDFREKKCVQTFFG-H------------EADVNSVCFHPS-GLAFATGSEDKTAR 1891 (2004)
Q Consensus 1827 ItsLafSPd-g~~LaSGS~DGsIrIWDlrs~k~I~tl~~-h------------~s~ItsIafSPd-g~~LaSgS~DGtIr 1891 (2004)
+.+|.++|. ...+++++.++.|...+- .++.-..+.. . ...+.++.++|+ ...++++...| |.
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~ 256 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IY 256 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EE
Confidence 789999983 455666655555554432 2222122111 0 124889999985 45677776544 44
Q ss_pred EEEccCCceeEEEcCCCCC---CCeEEEEEcC-CCCEEEEEeC-----------CCeEEEEECCC-CeeeEEEc-cCCC-
Q psy8748 1892 LFDIRADQQIATYLPPNKN---SGFTSCAVSS-SGRYIFCGSD-----------DNNVHVWDLLK-TTHNGVLS-GHEN- 1953 (2004)
Q Consensus 1892 IWDLrtgk~i~t~~~~~~~---s~ItsLafSP-dG~~LaSGSs-----------DGsIrIWDL~t-ge~l~tL~-gHs~- 1953 (2004)
..+ ..++.-..+...... ..+.+++++| +...+.++.. ++...+|.... ++.-..+. +-..
T Consensus 257 ~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~ 335 (394)
T 3b7f_A 257 RMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTD 335 (394)
T ss_dssp EEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCS
T ss_pred EeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCc
Confidence 443 223322222110111 2356788886 3444555432 23345555443 23222221 1110
Q ss_pred ------CeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1954 ------RVTSISLSPN-GMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1954 ------~VtsLaFSPD-g~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
....++++|. ...|+.++.++.|. ...+.++.|+.+.
T Consensus 336 ~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~-~S~D~G~tW~~~~ 379 (394)
T 3b7f_A 336 QAWLTVKRQAMTADAHAPVGVYFGTTGGEIW-ASADEGEHWQCIA 379 (394)
T ss_dssp SCCCCCCTBSEEECCSSSCCEEEECTTSCEE-EESSTTSBCEEEE
T ss_pred cccceEEEEEEEECCCCCCEEEEEeCCCeEE-EECCCCCCceEcc
Confidence 1245788874 34566676666543 3455667788776
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=91.55 E-value=13 Score=46.47 Aligned_cols=159 Identities=13% Similarity=0.162 Sum_probs=90.5
Q ss_pred cCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeE--EEEEec------CCCCeEEEEEeCC---CCEEEEEEC------
Q psy8748 1824 IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC--VQTFFG------HEADVNSVCFHPS---GLAFATGSE------ 1886 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~--I~tl~~------h~s~ItsIafSPd---g~~LaSgS~------ 1886 (2004)
....+.|+|.|+|+++++-...+.|++++..++.. +..+.. .......|+|+|+ +..|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34567999999998666544334799888655543 222221 2356779999995 555554442
Q ss_pred -------CCeEEEEEccCC-------ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC---------------------
Q psy8748 1887 -------DKTARLFDIRAD-------QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD--------------------- 1931 (2004)
Q Consensus 1887 -------DGtIrIWDLrtg-------k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD--------------------- 1931 (2004)
...|.-|+...+ +.+..............++|.|||.+.++.+..
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~ 185 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQ 185 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHH
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccc
Confidence 235666665432 112221122222346899999999877764431
Q ss_pred -----------CeEEEEECCCCe-----------eeEEE-ccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCC
Q psy8748 1932 -----------NNVHVWDLLKTT-----------HNGVL-SGHENRVTSISLSPNGMALVTS-SWDQFVKVWQESNT 1984 (2004)
Q Consensus 1932 -----------GsIrIWDL~tge-----------~l~tL-~gHs~~VtsLaFSPDg~~LaSg-S~DGtIrIWdlstg 1984 (2004)
|.|.-++.. +. ....+ .+| .....++|+++|.+.++- +.|+.-.|..+..|
T Consensus 186 ~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G 260 (454)
T 1cru_A 186 ELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG 260 (454)
T ss_dssp HHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred cccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence 344444432 22 11122 233 347889999988765543 44555666666554
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=91.52 E-value=41 Score=43.36 Aligned_cols=274 Identities=10% Similarity=0.064 Sum_probs=141.1
Q ss_pred CCCCEEEEEeC-CCeEEEEECCCCceEEEeeC-CCCceEEEEEe--cCCCEEEEeecCCeEEE------EEcCCCCCCCc
Q psy8748 1702 GDSRHCVSGSL-DGKLIIWDTWTGNKTQVIPL-RSAWVMSVAFA--QSGNFVACGGMDNMCTV------YDLNNRDSTGA 1771 (2004)
Q Consensus 1702 PDG~~LASGS~-DGtIrVWDl~Tgk~l~ti~~-Ht~~ItsLafS--Pdg~~LaSGS~DGtIrV------WDl~t~~~~~~ 1771 (2004)
-||+||+.-.. +..|...++...++-..+.. ....+.++.|- |+..++++++... +-+ ..++.. ..
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~-~P~pndg~~~~~~~~---~~ 215 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFI-IPHPNDGKVFDLQDE---NS 215 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSC-EESSCSSSCCCTTST---TE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceee-ccCCCCCcccccCCh---hh
Confidence 37788887764 57788889988887776654 34568899986 6788888887543 111 000110 01
Q ss_pred ceEEEEEecCccceeeeEEeCCCc-EEEeecCCeEEEEECCC---CceeEEeeccccCCeEEEEEC--------CCCCEE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTT-LLTGSGDMKIVTWNLET---GQRIHEVAQAHIGDVVSISLS--------PDGQYF 1839 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~DGtI~IWDl~t---g~~i~~il~~h~~~ItsLafS--------Pdg~~L 1839 (2004)
......+.+..-.+..-...+++. ..-.+.+|...++.--+ +..+.... ....=..+.|+ .+|++-
T Consensus 216 y~~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~--~~e~D~~~vfn~~~ie~~vk~G~~~ 293 (638)
T 3sbq_A 216 YTMYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMM--RNERDWVVVFDIHAVEAAVKAGDFI 293 (638)
T ss_dssp EEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHT--CSSCEEEEEEEHHHHHHHHHTTCCB
T ss_pred ceEEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcC--cccccEEEEecHHHHHHHHhcCCeE
Confidence 111111111111111000011111 11122222222222111 11100000 00111112221 123322
Q ss_pred EEEECCC-eEEEEECCC----CeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEEccCCce-----e-----EE
Q psy8748 1840 VTGSVDK-SCKLWDFRE----KKCVQTFFGHEADVNSVCFHPSGLAFATGSE-DKTARLFDIRADQQ-----I-----AT 1903 (2004)
Q Consensus 1840 aSGS~DG-sIrIWDlrs----~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~-DGtIrIWDLrtgk~-----i-----~t 1903 (2004)
. .+| .+.+.|.+. +..+..+..-.....++.++|||+++++++. +.++.++|+++... + ..
T Consensus 294 ~---~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~ 370 (638)
T 3sbq_A 294 T---LGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVI 370 (638)
T ss_dssp C---CTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGE
T ss_pred E---ECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccce
Confidence 1 121 366777665 2222222233344567889999999887764 78899999874211 0 00
Q ss_pred EcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------eeeEEEccCCCCeEEEEE------cCCCCEE
Q psy8748 1904 YLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT----------THNGVLSGHENRVTSISL------SPNGMAL 1967 (2004)
Q Consensus 1904 ~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg----------e~l~tL~gHs~~VtsLaF------SPDg~~L 1967 (2004)
.......-.....+|+++|+-..+-.-|..|.-|++... ..+..+..|-.+- .+.- .+||++|
T Consensus 371 ~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~l 449 (638)
T 3sbq_A 371 VGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWL 449 (638)
T ss_dssp EECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEE
T ss_pred EeeccCCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEE
Confidence 111123455778999999955556668999999998543 3455555554432 2222 4789999
Q ss_pred EEEE---CCCe----------EEEEECCCCe
Q psy8748 1968 VTSS---WDQF----------VKVWQESNTI 1985 (2004)
Q Consensus 1968 aSgS---~DGt----------IrIWdlstg~ 1985 (2004)
++.. .|+. -.+.|+++.+
T Consensus 450 v~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 450 VALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 9984 4654 3888887764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=90.41 E-value=14 Score=43.71 Aligned_cols=162 Identities=11% Similarity=0.029 Sum_probs=93.4
Q ss_pred CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE----CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC
Q psy8748 1802 DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS----VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPS 1877 (2004)
Q Consensus 1802 DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS----~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPd 1877 (2004)
.+.|+..++..++.. .+. . .. +..|++++++|+... .+..|+..++.... ...+..+.. ..++++
T Consensus 87 ~~~Iy~i~~dg~~~~-~l~-~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~ 155 (302)
T 3s25_A 87 RNSLCRIKRNGHGST-VLD-P--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTS 155 (302)
T ss_dssp SEEEEEEETTSCCCE-EEE-C--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEE
T ss_pred CCeEEEEeCCCCcce-Eee-c--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEE
Confidence 357888888776533 221 1 11 236677888888776 23456666766433 333433332 346778
Q ss_pred CCEEEEEEC-CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEEEccCCCC
Q psy8748 1878 GLAFATGSE-DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD--NNVHVWDLLKTTHNGVLSGHENR 1954 (2004)
Q Consensus 1878 g~~LaSgS~-DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD--GsIrIWDL~tge~l~tL~gHs~~ 1954 (2004)
++.|+-.+. ...|.+.++..+.....+. . .. ...++|++.+|+-...+ ..|..-++.... ...+. ...
T Consensus 156 g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt--~~~ 226 (302)
T 3s25_A 156 DRYFYYNNPKNGQLYRYDTASQSEALFYD--C---NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT--EAN 226 (302)
T ss_dssp TTEEEEECTTTCCEEEEETTTTEEEEEEC--S---CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS--CSC
T ss_pred CCEEEEEeCCCceEEEEECCCCCEEEEeC--C---Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe--CCC
Confidence 888776654 5678888887655443331 1 12 23466989988876654 356666665443 33333 223
Q ss_pred eEEEEEcCCCCEEEEEEC--CCeEEEEECCCCe
Q psy8748 1955 VTSISLSPNGMALVTSSW--DQFVKVWQESNTI 1985 (2004)
Q Consensus 1955 VtsLaFSPDg~~LaSgS~--DGtIrIWdlstg~ 1985 (2004)
+ ..|+|++.+|+-+.. .+.|..-++++..
T Consensus 227 ~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 227 I--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp E--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred c--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 3 336777888776532 3566666666654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=90.26 E-value=3.4 Score=47.29 Aligned_cols=149 Identities=12% Similarity=-0.006 Sum_probs=84.6
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCCce------EEEeeC-CCCceEEEEEecCCCEEEEeecCCeEEEEEcCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK------TQVIPL-RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~------l~ti~~-Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t 1765 (2004)
..+.+++|+|+|.+.++ .+|.++-.+..+... -..+-. --..-.++.|.++|.+.++ .||.|.-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36779999999986666 678777666544211 111110 0011478899999998888 569887776533
Q ss_pred CCCCC-cceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCc------eeEEeeccccCCeEEEEECCCCCE
Q psy8748 1766 RDSTG-AAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQ------RIHEVAQAHIGDVVSISLSPDGQY 1838 (2004)
Q Consensus 1766 ~~~~~-~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~------~i~~il~~h~~~ItsLafSPdg~~ 1838 (2004)
..... .......-.+.-..+..+.+.++..|.+.. |+.++-+...++. ....+-...-...+-+.|.+++..
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 22111 011111112223456788888899988888 8886554433222 111111122233455678888876
Q ss_pred EEEEECCCeE
Q psy8748 1839 FVTGSVDKSC 1848 (2004)
Q Consensus 1839 LaSGS~DGsI 1848 (2004)
.++. +|.+
T Consensus 196 ~~v~--~g~~ 203 (236)
T 1tl2_A 196 FGVQ--GGKF 203 (236)
T ss_dssp EEEE--TTEE
T ss_pred EEEe--CCeE
Confidence 6665 6643
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=88.91 E-value=13 Score=43.41 Aligned_cols=222 Identities=12% Similarity=0.005 Sum_probs=116.0
Q ss_pred ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCce
Q psy8748 1736 WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQR 1815 (2004)
Q Consensus 1736 ~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~ 1815 (2004)
.|..++... ...+.-. ||.+..|-.......... ......+..++......++. . ||.|+.|-......
T Consensus 25 ~i~~ia~G~--~h~~~l~-~G~v~~wG~n~~Gqlg~p------~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 25 GVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMP------AATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SCCEEEECS--SEEEEEE-TTEEEEEECCSSSTTSCC------GGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTST
T ss_pred CCcEEEeCC--CeEEEEE-CCEEEEEeCCCCCCCCCC------ccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCC
Confidence 466666542 3333335 899999987653322210 01123455555555444555 4 99999998764322
Q ss_pred eEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEc
Q psy8748 1816 IHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDI 1895 (2004)
Q Consensus 1816 i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDL 1895 (2004)
+- ........|..++.... ..+.-+ ||.|+.|-......+-.-......|..++...+ +.+.-. ||.|..|-.
T Consensus 94 lg-~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~ 166 (282)
T 3qhy_B 94 TT-VPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGD 166 (282)
T ss_dssp TC-CCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEEC
T ss_pred CC-CCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecC
Confidence 21 11122346777776533 444445 999999976542211111112345666655433 333334 799999976
Q ss_pred cCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q psy8748 1896 RADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQF 1975 (2004)
Q Consensus 1896 rtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGt 1975 (2004)
.....+.. +......|..++...+ +.++- .||.|+.|-....-.+..-......|..++-..+....++ ||.
T Consensus 167 n~~gqlg~--p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~ 238 (282)
T 3qhy_B 167 NYFGQTTV--PAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGK 238 (282)
T ss_dssp CTTSTTSC--CGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTE
T ss_pred CCCCCCCC--ceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCE
Confidence 54322211 1111234666665433 33333 5999999976442222111112245777776544333333 899
Q ss_pred EEEEECCC
Q psy8748 1976 VKVWQESN 1983 (2004)
Q Consensus 1976 IrIWdlst 1983 (2004)
|+.|-...
T Consensus 239 v~~wG~n~ 246 (282)
T 3qhy_B 239 VIAWGSSR 246 (282)
T ss_dssp EEEESTTC
T ss_pred EEEecCCC
Confidence 99996554
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=88.19 E-value=48 Score=39.29 Aligned_cols=237 Identities=13% Similarity=0.045 Sum_probs=130.9
Q ss_pred cCCCEEEEeecCCeEEEEEcCCCCCCCc---ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCC---C----
Q psy8748 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGA---AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLET---G---- 1813 (2004)
Q Consensus 1744 Pdg~~LaSGS~DGtIrVWDl~t~~~~~~---~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~t---g---- 1813 (2004)
++..++++.+.+|.|+--.+..-..... ......+......+........+.++..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 4677889999999999887754321111 11111122233333333344566788889999887776531 1
Q ss_pred --ceeEEe-eccccCCeEEEEECC---CCCEEEEEECCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEeCCCCE
Q psy8748 1814 --QRIHEV-AQAHIGDVVSISLSP---DGQYFVTGSVDKSCKLWDFRE-------KKCVQTFFGHEADVNSVCFHPSGLA 1880 (2004)
Q Consensus 1814 --~~i~~i-l~~h~~~ItsLafSP---dg~~LaSGS~DGsIrIWDlrs-------~k~I~tl~~h~s~ItsIafSPdg~~ 1880 (2004)
..+... .......|.++...+ ++.+++..+..|.++...+.. +.....+.. .+.+..+....++..
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~ 164 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEK 164 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCE
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCE
Confidence 110000 011233455554333 467888999999999988743 222222323 456666666655667
Q ss_pred EEEEECCCeEEEEEccCC----c---eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------ee
Q psy8748 1881 FATGSEDKTARLFDIRAD----Q---QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT---------TH 1944 (2004)
Q Consensus 1881 LaSgS~DGtIrIWDLrtg----k---~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg---------e~ 1944 (2004)
++..+.+|.+..+....- + -+..+... ....+..+..-.++..+++.+..|..+..++... ..
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~ 243 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYT 243 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCEE
Confidence 888999999999987531 1 11112112 2345666666556777888899999999987432 11
Q ss_pred eEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1945 NGVLS-GHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1945 l~tL~-gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
...+. ...+.+.++....+..-+...+..|.+.-....
T Consensus 244 ~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~ 282 (312)
T 1suu_A 244 SYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAG 282 (312)
T ss_dssp CSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGG
T ss_pred eeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcc
Confidence 11111 223445444333344445555556654434443
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.10 E-value=48 Score=39.19 Aligned_cols=236 Identities=8% Similarity=0.017 Sum_probs=125.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEE---------EeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC---CCCC
Q psy8748 1702 GDSRHCVSGSLDGKLIIWDTWTGNKTQ---------VIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN---RDST 1769 (2004)
Q Consensus 1702 PDG~~LASGS~DGtIrVWDl~Tgk~l~---------ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t---~~~~ 1769 (2004)
|+..++++.+.+|.|+--.+.+.+... .++ ..+.+..+........++..+..|.+.-+.... ....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 456678899999999877665432211 122 233454555555566777777788766555432 2111
Q ss_pred CcceEEE---EEecCccceeeeEE----eCCCcEEEeecCCeEEEEECCCCc-----eeEEe-eccccCCeEEEEECCCC
Q psy8748 1770 GAAKVIR---ELLGYEGFLSSCRF----IDDTTLLTGSGDMKIVTWNLETGQ-----RIHEV-AQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1770 ~~~k~i~---sl~gh~~~Vssvaf----sdd~~LlSgS~DGtI~IWDl~tg~-----~i~~i-l~~h~~~ItsLafSPdg 1836 (2004)
..+.... .+. ....+..+.. .++..++..+.+|.++...+..-. -...+ +..+ +.+..+....+.
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 1222111 122 2233444432 245568999999999998764211 11111 1222 555555555555
Q ss_pred CEEEEEECCCeEEEEECCC---------CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCc-------e
Q psy8748 1837 QYFVTGSVDKSCKLWDFRE---------KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ-------Q 1900 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs---------~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk-------~ 1900 (2004)
..++..+.+|.+..++... |.....+ .....|.++....++..+++.+..|.++-.++.... -
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG 236 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL-GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 236 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe-CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence 6788888899888887642 1111122 234566666655556678888999999988874321 1
Q ss_pred eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
............+..+....+...++..+.+|.+.-+++..
T Consensus 237 ~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 237 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11111122224444444433445566666777766666543
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=87.85 E-value=12 Score=43.82 Aligned_cols=223 Identities=13% Similarity=0.059 Sum_probs=113.7
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcce
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k 1773 (2004)
.|..++.... +.+.-. ||.|+.|-......+..-......|..++...+. .++. . ||.|..|-...........
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 5677776433 223234 8999999754322111111112356666654322 2333 4 8999999876533221111
Q ss_pred EEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEEC
Q psy8748 1774 VIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDF 1853 (2004)
Q Consensus 1774 ~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDl 1853 (2004)
.....+..++......++ -+ +|.|+.|-......+. ........|..++..... .+.-. ||.|+.|-.
T Consensus 99 ------~~~~~v~~ia~G~~hs~a-l~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~ 166 (282)
T 3qhy_B 99 ------EARSGVDAIAAGAWASYA-LK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGD 166 (282)
T ss_dssp ------GGSSSEEEEEEETTEEEE-EE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEEC
T ss_pred ------ccCCCeEEEECcCCEEEE-Ee-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCE--EEEEE-CCEEEEecC
Confidence 012345555554444444 44 9999999876432221 112234567777765332 33334 799999976
Q ss_pred CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCe
Q psy8748 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNN 1933 (2004)
Q Consensus 1854 rs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGs 1933 (2004)
.....+..-......|..++...+ +.+.- .||.|+.|-......+.. +......|..++.... ..++ -. ||.
T Consensus 167 n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~--p~~~~~~v~~i~~G~~-h~~a-l~-~g~ 238 (282)
T 3qhy_B 167 NYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTV--PTEALSGVSAIASGEW-YSLA-LK-NGK 238 (282)
T ss_dssp CTTSTTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCC--CGGGGSSCCEEEECSS-CEEE-EE-TTE
T ss_pred CCCCCCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCC--CcccCCCceEEEcCCC-EEEE-EE-CCE
Confidence 542211111111345666665443 32333 599999997654322211 0111234666665443 2333 33 999
Q ss_pred EEEEECCCC
Q psy8748 1934 VHVWDLLKT 1942 (2004)
Q Consensus 1934 IrIWDL~tg 1942 (2004)
|+.|-....
T Consensus 239 v~~wG~n~~ 247 (282)
T 3qhy_B 239 VIAWGSSRT 247 (282)
T ss_dssp EEEESTTCC
T ss_pred EEEecCCCC
Confidence 999976543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=87.51 E-value=68 Score=40.24 Aligned_cols=235 Identities=12% Similarity=0.050 Sum_probs=116.5
Q ss_pred cceeEEEEeCCCC-EEEEEeCCCeEEEEECCCCc---eEEEeeC---------CCCceEEEEEecC----CCEEEEeecC
Q psy8748 1693 NKVNSVHYSGDSR-HCVSGSLDGKLIIWDTWTGN---KTQVIPL---------RSAWVMSVAFAQS----GNFVACGGMD 1755 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk---~l~ti~~---------Ht~~ItsLafSPd----g~~LaSGS~D 1755 (2004)
..-+.|+|.|||. .++++...|.|++++..... .+..+.. .......|+|+|+ +.+.++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999996 45556678999999743221 2222211 1356789999996 4444443321
Q ss_pred ------------CeEEEEEcCCCCC----CCcceEEEEEe--cCccceeeeEEeCCCcEEEeecC---------------
Q psy8748 1756 ------------NMCTVYDLNNRDS----TGAAKVIRELL--GYEGFLSSCRFIDDTTLLTGSGD--------------- 1802 (2004)
Q Consensus 1756 ------------GtIrVWDl~t~~~----~~~~k~i~sl~--gh~~~Vssvafsdd~~LlSgS~D--------------- 1802 (2004)
..|.-|.+..... ....+.+.... ........+.|.+++.|+++..|
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1444566643211 11223333322 22344567888877776655433
Q ss_pred ---CeEEEEECCCCc-------------------eeEEeeccccCCeEEEEECCC-----CC-EEEEEECCC----eEEE
Q psy8748 1803 ---MKIVTWNLETGQ-------------------RIHEVAQAHIGDVVSISLSPD-----GQ-YFVTGSVDK----SCKL 1850 (2004)
Q Consensus 1803 ---GtI~IWDl~tg~-------------------~i~~il~~h~~~ItsLafSPd-----g~-~LaSGS~DG----sIrI 1850 (2004)
|.|.-.|.+... ....+..+|. ....++|+|. |. +++.+...| .-.|
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei 252 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSARI 252 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence 334444544310 0011122332 3456899986 33 444433212 1223
Q ss_pred EECCCC------eEEEEEecCC-CCeEEEEEeCC-------CCEEEEEECCCeEEEEEccCCce---eEEEc-C------
Q psy8748 1851 WDFREK------KCVQTFFGHE-ADVNSVCFHPS-------GLAFATGSEDKTARLFDIRADQQ---IATYL-P------ 1906 (2004)
Q Consensus 1851 WDlrs~------k~I~tl~~h~-s~ItsIafSPd-------g~~LaSgS~DGtIrIWDLrtgk~---i~t~~-~------ 1906 (2004)
..+..+ .++..+..+. ..+..+.|-.. +.+| ++...+.|....+..... ...+. .
T Consensus 253 ~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f-~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 253 LQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYV-FGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEE-EEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred eeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEE-EecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 333222 1333443221 46777777532 3344 455557776666543321 11110 0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGS 1929 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGS 1929 (2004)
......+..+.+.|||.++++.+
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 11235689999999999888765
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.41 E-value=53 Score=38.86 Aligned_cols=238 Identities=8% Similarity=-0.011 Sum_probs=131.1
Q ss_pred cCCCEEEEeecCCeEEEEEcCCCCCCCc---ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEEC---CC-----
Q psy8748 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGA---AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNL---ET----- 1812 (2004)
Q Consensus 1744 Pdg~~LaSGS~DGtIrVWDl~t~~~~~~---~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl---~t----- 1812 (2004)
|+..++++.+.+|.|+--.+........ ......+......+........+.++..+..|.++-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 3566788899999998777654221110 111111222233333344446667888888898776654 22
Q ss_pred -CceeEEee-ccccCCeEEEEEC---CCCCEEEEEECCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEeCCCCE
Q psy8748 1813 -GQRIHEVA-QAHIGDVVSISLS---PDGQYFVTGSVDKSCKLWDFRE-------KKCVQTFFGHEADVNSVCFHPSGLA 1880 (2004)
Q Consensus 1813 -g~~i~~il-~~h~~~ItsLafS---Pdg~~LaSGS~DGsIrIWDlrs-------~k~I~tl~~h~s~ItsIafSPdg~~ 1880 (2004)
|..+.... ......|.++..- .++.+++..+.+|.++...+.. +.....+..+ +.+..+....+...
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 22111111 1233456665442 3566899999999999987642 2111222233 55666655555667
Q ss_pred EEEEECCCeEEEEEccCCce-------eEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------ee
Q psy8748 1881 FATGSEDKTARLFDIRADQQ-------IATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT---------TH 1944 (2004)
Q Consensus 1881 LaSgS~DGtIrIWDLrtgk~-------i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg---------e~ 1944 (2004)
++..+.+|.+..++...-.. ..-+. -.....+..+....++..+++.+..|.++-.++... ..
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR-LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-CCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEE-eCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 88888999988888643211 11111 122345666655556678888999999988877321 11
Q ss_pred eEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1945 NGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1945 l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
...+....+.+..+....+..-++..+.+|.+.-+..+.
T Consensus 239 ~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 239 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 222222335665555544445566777778777666654
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.20 E-value=44 Score=40.05 Aligned_cols=235 Identities=10% Similarity=0.004 Sum_probs=128.3
Q ss_pred CCEEEEEeCCCeEEEEECCCC-------ceEEEee-CCCCceEEEEEecCCCEEEEeecCCeEEEEEc---CCCCCCCcc
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTG-------NKTQVIP-LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL---NNRDSTGAA 1772 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tg-------k~l~ti~-~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl---~t~~~~~~~ 1772 (2004)
...+++.+.+|.|+--.+.+. +-...+. ...+.+..+........++.-+..|.++-... ........+
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 346777888888876543221 1111111 12344555555555666666667776655443 322111122
Q ss_pred eEEEE---EecCccceeeeE-Ee---CCCcEEEeecCCeEEEEECCCCce-----eEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1773 KVIRE---LLGYEGFLSSCR-FI---DDTTLLTGSGDMKIVTWNLETGQR-----IHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1773 k~i~s---l~gh~~~Vssva-fs---dd~~LlSgS~DGtI~IWDl~tg~~-----i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
..+.. +.. ...+..+. .. ++..++..+.+|.|+...+..-.. ...+.....+.+..+........++
T Consensus 83 ~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEE
Confidence 22111 122 23344333 32 356799999999999987654221 1111112234555555555566788
Q ss_pred EEECCCeEEEEECC--CC---------eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce-------eE
Q psy8748 1841 TGSVDKSCKLWDFR--EK---------KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ-------IA 1902 (2004)
Q Consensus 1841 SGS~DGsIrIWDlr--s~---------k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~-------i~ 1902 (2004)
..+..|.+..+... .- .....+ .....|.++...+++.+++..+..|.++.-.+..... +.
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE
Confidence 88999998888766 21 111112 2345677777666677899999999999887643221 22
Q ss_pred EEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
.+........+..+....+...++..+.+|.+.-++..
T Consensus 241 ~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 241 TVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 22222213345555544455677777888888777764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=86.65 E-value=14 Score=52.06 Aligned_cols=232 Identities=11% Similarity=0.038 Sum_probs=121.3
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC-CcceEEEEE
Q psy8748 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST-GAAKVIREL 1778 (2004)
Q Consensus 1700 FSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~-~~~k~i~sl 1778 (2004)
.+|..+.+|.-. .+++.|+|+.+..++..+.... .|.--.|-... .|+..+ +..|.-|++...... ..+.....+
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence 456666555443 6789999999988887766544 46666675433 333333 356999999642110 001111111
Q ss_pred ecCccceeeeEEeCC-Cc-EEEe------ecCCeEEEEECCCCceeEEeeccccCCeEEEEECC---CCCEEEEEEC---
Q psy8748 1779 LGYEGFLSSCRFIDD-TT-LLTG------SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP---DGQYFVTGSV--- 1844 (2004)
Q Consensus 1779 ~gh~~~Vssvafsdd-~~-LlSg------S~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP---dg~~LaSGS~--- 1844 (2004)
. ...|..-...++ .. +++| .-.|.+.+|..+.+.. ....+|.+....+.... ..+.++.+..
T Consensus 149 ~--~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s--Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~ 224 (1630)
T 1xi4_A 149 A--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (1630)
T ss_pred c--cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc--hhhhHhHhhhheeccCCCCCCceEEEEEEecCC
Confidence 1 111222222222 22 2222 2358889998876543 34456655544444321 1223333322
Q ss_pred CCeEEEEECCCC---e------EEEEEec---CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1845 DKSCKLWDFREK---K------CVQTFFG---HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1845 DGsIrIWDlrs~---k------~I~tl~~---h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
.|.++|.++... . .+..+.. ..+-..++..++.-..++.-+.-|.|++||+.++.++..-.... ..
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~--~~ 302 (1630)
T 1xi4_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG--ET 302 (1630)
T ss_pred CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccC--Cc
Confidence 368899888543 1 1111111 12334567777777788888899999999999998876543222 23
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy8748 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsDGsIrIWDL~t 1941 (2004)
|...+.+....=+++....|.|.-..+..
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 33333333222233333555555544433
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=86.18 E-value=60 Score=38.25 Aligned_cols=209 Identities=9% Similarity=0.028 Sum_probs=113.0
Q ss_pred eCCCCEEEEEe--CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC--------------CeEEEEEcC
Q psy8748 1701 SGDSRHCVSGS--LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD--------------NMCTVYDLN 1764 (2004)
Q Consensus 1701 SPDG~~LASGS--~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D--------------GtIrVWDl~ 1764 (2004)
+.+|.+++-.. .++.|+..+..... ...+... .+--++++|++|.-+... +.|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 35667666553 35677777754333 3333321 133557888888776543 356666665
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCCcEEEee----cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGS----GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS----~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
..+ ... +.... ...+.. .++.++-.. .+..|+..++...... .+. .+. + ..++++++.|+
T Consensus 97 g~~----~~~---l~~~~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt-~~~--~--~~~~~~g~~iy 160 (302)
T 3s25_A 97 GHG----STV---LDPDP--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIK-NHY--L--FTCNTSDRYFY 160 (302)
T ss_dssp SCC----CEE---EECSC--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCE-EEE-SSC--C--CCSEEETTEEE
T ss_pred CCc----ceE---eecCC--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeE-EEe-CCC--c--eEeeEECCEEE
Confidence 432 111 11111 112222 344544443 4556777777644332 332 222 1 34567788887
Q ss_pred EEEC-CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC--CeEEEEEccCCceeEEEcCCCCCCCeEEEE
Q psy8748 1841 TGSV-DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED--KTARLFDIRADQQIATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1841 SGS~-DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D--GtIrIWDLrtgk~i~t~~~~~~~s~ItsLa 1917 (2004)
..+. ...|...++..+.....+. +... ..++|++.+|+-...+ ..|..-++.... ...+.. ..+ ..
T Consensus 161 ~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~----~~~--~~ 229 (302)
T 3s25_A 161 YNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE----ANI--EH 229 (302)
T ss_dssp EECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC----SCE--EE
T ss_pred EEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC----CCc--ce
Confidence 6665 5678888887765443332 2222 3466888887766544 356666666444 333321 223 34
Q ss_pred EcCCCCEEEEEeC--CCeEEEEECCC
Q psy8748 1918 VSSSGRYIFCGSD--DNNVHVWDLLK 1941 (2004)
Q Consensus 1918 fSPdG~~LaSGSs--DGsIrIWDL~t 1941 (2004)
|+|+|++|+-++. .+.|..-++..
T Consensus 230 ~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 230 YNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEEETTEEEEEECSSSCEEEEEETTS
T ss_pred EEECCCEEEEEECCCCcEEEEEECCC
Confidence 7888988876533 35677777643
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=85.93 E-value=50 Score=38.56 Aligned_cols=200 Identities=11% Similarity=0.094 Sum_probs=114.3
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEE---ECCCCceEEEeeCCCCceEEEEEec--CCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIW---DTWTGNKTQVIPLRSAWVMSVAFAQ--SGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVW---Dl~Tgk~l~ti~~Ht~~ItsLafSP--dg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
+.+..+.-.....+|+.-+++|.++-- ++..+.... +-.....|..+.. . +..+++..+.+|.++-..+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 456665555555667777778876643 333221111 2223455666644 4 56799999999999999876532
Q ss_pred CCCcceEEEEEecCccceeeeEE-eCCCcEEEeecCCeEEEEECCC----C---ceeEEeeccccCCeEEEEECCCCCEE
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRF-IDDTTLLTGSGDMKIVTWNLET----G---QRIHEVAQAHIGDVVSISLSPDGQYF 1839 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvaf-sdd~~LlSgS~DGtI~IWDl~t----g---~~i~~il~~h~~~ItsLafSPdg~~L 1839 (2004)
..........+.. .+.+..+.. .....++..+..|.++.++... + .-..-+.......|.++...+++..+
T Consensus 102 ~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 102 YKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp TCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 1111111112222 233333333 3455788899999988887532 1 11111111233556666655667789
Q ss_pred EEEECCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE--EEcc
Q psy8748 1840 VTGSVDKSCKLWDFRE-------KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARL--FDIR 1896 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs-------~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrI--WDLr 1896 (2004)
+..+..|.++...+.. ++-+..+ ...+.+..+....++..++..+.+|.+.. ++..
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 9999999999887642 2223333 23445555544444456777778888877 7764
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=85.82 E-value=68 Score=38.53 Aligned_cols=259 Identities=7% Similarity=-0.011 Sum_probs=123.5
Q ss_pred cceeEEEEeC--CCCEEEEEeCCC----eEEEEECCCCceEEEeeC--------------CCCceEEEEEecC--CCEEE
Q psy8748 1693 NKVNSVHYSG--DSRHCVSGSLDG----KLIIWDTWTGNKTQVIPL--------------RSAWVMSVAFAQS--GNFVA 1750 (2004)
Q Consensus 1693 ~~VtsLaFSP--DG~~LASGS~DG----tIrVWDl~Tgk~l~ti~~--------------Ht~~ItsLafSPd--g~~La 1750 (2004)
..|.+|++.| ++... .++..| .|...+ ..|+.-..+.. ....|.++++.|. ...+.
T Consensus 55 ~~v~~i~~dp~~~~~l~-~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 55 HTIHHIVQDPREPERML-MAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp SEEEEEEECSSSTTCEE-EEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CceEEEEECCCCCCeEE-EEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 4689999998 44444 444444 343332 23332222211 1125778899872 45566
Q ss_pred EeecCCeEEEEEcCCCCCCCcceEEEEEe----------------cCccceeeeEEeC--CCcEEEeecCCeEEEEECCC
Q psy8748 1751 CGGMDNMCTVYDLNNRDSTGAAKVIRELL----------------GYEGFLSSCRFID--DTTLLTGSGDMKIVTWNLET 1812 (2004)
Q Consensus 1751 SGS~DGtIrVWDl~t~~~~~~~k~i~sl~----------------gh~~~Vssvafsd--d~~LlSgS~DGtI~IWDl~t 1812 (2004)
+++..+.| |....+.. ......... .....+.++.+.+ .+.+++++.++.|...+-.
T Consensus 133 ~g~~~ggl--~~S~DgG~--tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg- 207 (394)
T 3b7f_A 133 AGTSPQGL--FRSTDHGA--SWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA- 207 (394)
T ss_dssp EEEETTEE--EEESSTTS--BCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-
T ss_pred EEecCCcE--EEEcCCCC--CeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-
Confidence 66555544 33332211 112111110 0123456676663 3567777666655554322
Q ss_pred CceeEEeeccc------------cCCeEEEEECCC-CCEEEEEECCCeEEEEECCCCeEEEEEec-C-C---CCeEEEEE
Q psy8748 1813 GQRIHEVAQAH------------IGDVVSISLSPD-GQYFVTGSVDKSCKLWDFREKKCVQTFFG-H-E---ADVNSVCF 1874 (2004)
Q Consensus 1813 g~~i~~il~~h------------~~~ItsLafSPd-g~~LaSGS~DGsIrIWDlrs~k~I~tl~~-h-~---s~ItsIaf 1874 (2004)
++.-....... ...+.++.++|. ...+++++..| |...+- .++.-..+.. . . ..+.++.+
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~ 285 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVV 285 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEE
Confidence 22222221110 134889999985 46777776544 555442 2332222221 1 1 23567888
Q ss_pred eC-CCCEEEEEEC-----------CCeEEEEEccC-CceeEEEc--CCCCCC----CeEEEEEcCC-CCEEEEEeCCCeE
Q psy8748 1875 HP-SGLAFATGSE-----------DKTARLFDIRA-DQQIATYL--PPNKNS----GFTSCAVSSS-GRYIFCGSDDNNV 1934 (2004)
Q Consensus 1875 SP-dg~~LaSgS~-----------DGtIrIWDLrt-gk~i~t~~--~~~~~s----~ItsLafSPd-G~~LaSGSsDGsI 1934 (2004)
+| +...++++.. ++...+|.... ++.-..+. .+.... ....++++|. ...|++++.++.|
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 76 3344555532 33345665544 33333221 111100 1135778874 4557777666655
Q ss_pred EEEECCCCeeeEEEccCCCCeEEEEEc
Q psy8748 1935 HVWDLLKTTHNGVLSGHENRVTSISLS 1961 (2004)
Q Consensus 1935 rIWDL~tge~l~tL~gHs~~VtsLaFS 1961 (2004)
..-+ ..++.-..+..+-..+.+++|.
T Consensus 366 ~~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 366 WASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred EEEC-CCCCCceEcccCCCCeeEEEEe
Confidence 5332 3344444444444567777764
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=85.65 E-value=67 Score=38.35 Aligned_cols=236 Identities=11% Similarity=0.079 Sum_probs=130.6
Q ss_pred cCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECC---C------Cc
Q psy8748 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLE---T------GQ 1814 (2004)
Q Consensus 1744 Pdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~---t------g~ 1814 (2004)
|+..++++.+.+|.|+--.+......... ...+......+........+.++..+..|.++-+... . |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~--~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQ--DFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTC--CCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcc--ccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 56778889999999988765421100000 0112222333333344466678888888987776542 1 22
Q ss_pred eeEEee-ccccCCeEEEEECC---CCCEEEEEECCCeEEEEECCC--------CeEEEEEecCCCCeEEEEEeCCCCEEE
Q psy8748 1815 RIHEVA-QAHIGDVVSISLSP---DGQYFVTGSVDKSCKLWDFRE--------KKCVQTFFGHEADVNSVCFHPSGLAFA 1882 (2004)
Q Consensus 1815 ~i~~il-~~h~~~ItsLafSP---dg~~LaSGS~DGsIrIWDlrs--------~k~I~tl~~h~s~ItsIafSPdg~~La 1882 (2004)
.+.... ......|.++...+ ++.+++..+.+|.++...+.. +.....+.. .+.+..+........++
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEE
Confidence 111111 11233466543333 266899999999999988742 221112222 35566666655666788
Q ss_pred EEECCCeEEEEEccCCce-------eEEEcCCCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-------eeeEE
Q psy8748 1883 TGSEDKTARLFDIRADQQ-------IATYLPPNKNSGFTSCAVSSSGR-YIFCGSDDNNVHVWDLLKT-------THNGV 1947 (2004)
Q Consensus 1883 SgS~DGtIrIWDLrtgk~-------i~t~~~~~~~s~ItsLafSPdG~-~LaSGSsDGsIrIWDL~tg-------e~l~t 1947 (2004)
..+.+|.+..++...-.. +.-... .....+..+..-+++. .+++.+..|..+..++... +-+..
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~ 238 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNL-KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVI 238 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCC-CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEEC
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEe-CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEEC
Confidence 888999998888643211 111111 2234466665444455 7888889999888877431 11121
Q ss_pred E---ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1948 L---SGHENRVTSISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1948 L---~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
+ ....+.+..+....++..++..+..|.+.-..+++
T Consensus 239 ~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 239 LRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred eeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 2 22233555443333445566777777776666654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=81.61 E-value=1.3e+02 Score=38.75 Aligned_cols=187 Identities=13% Similarity=0.144 Sum_probs=108.3
Q ss_pred cEEEee-cCCeEEEEECCCCceeEEeeccccCCeEEEEEC--CCCCEEEEEECC-------CeEE------------EEE
Q psy8748 1795 TLLTGS-GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLS--PDGQYFVTGSVD-------KSCK------------LWD 1852 (2004)
Q Consensus 1795 ~LlSgS-~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafS--Pdg~~LaSGS~D-------GsIr------------IWD 1852 (2004)
++++-. .+..|-..+++..++-..+.......+.+++|. |+..|+++++.. |... ..|
T Consensus 144 ylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 144 YLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred EEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 344443 456777788887776654545566778899887 677888888753 3210 012
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC---------------eEEEEEcc-------CCc-------eeEE
Q psy8748 1853 FREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK---------------TARLFDIR-------ADQ-------QIAT 1903 (2004)
Q Consensus 1853 lrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG---------------tIrIWDLr-------tgk-------~i~t 1903 (2004)
..+.+....+.- .+....+...++|.+.++.+.+. .+.++|+. .|+ -+..
T Consensus 224 ~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V 302 (638)
T 3sbq_A 224 AETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV 302 (638)
T ss_dssp TTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred CCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence 222211111110 12233445567788877776532 35566542 111 0111
Q ss_pred EcCCC-------------CCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCC------ee-------eEEEccCCCCeE
Q psy8748 1904 YLPPN-------------KNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKT------TH-------NGVLSGHENRVT 1956 (2004)
Q Consensus 1904 ~~~~~-------------~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tg------e~-------l~tL~gHs~~Vt 1956 (2004)
+.... .......+.++|||+++++++. +.++.++|+++. +. ..... -.-...
T Consensus 303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPl 381 (638)
T 3sbq_A 303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPL 381 (638)
T ss_dssp EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEE
T ss_pred EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCccc
Confidence 11100 0122345789999999988765 778999998642 11 11222 234568
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCC
Q psy8748 1957 SISLSPNGMALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1957 sLaFSPDg~~LaSgS~DGtIrIWdlst 1983 (2004)
..+|.++|....|.--|..|.-|++..
T Consensus 382 Ht~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 382 HTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred EEEECCCCceEeeeeecceEEEEeccH
Confidence 889999996555666899999999975
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=81.59 E-value=1e+02 Score=37.47 Aligned_cols=236 Identities=12% Similarity=0.032 Sum_probs=129.0
Q ss_pred ecCCCEEEEeecCCeEEEEEcCCCCC---CCcceEEEEEecCccceeeeEE-eCCCcEEEeecCCeEEEEEC---CC---
Q psy8748 1743 AQSGNFVACGGMDNMCTVYDLNNRDS---TGAAKVIRELLGYEGFLSSCRF-IDDTTLLTGSGDMKIVTWNL---ET--- 1812 (2004)
Q Consensus 1743 SPdg~~LaSGS~DGtIrVWDl~t~~~---~~~~k~i~sl~gh~~~Vssvaf-sdd~~LlSgS~DGtI~IWDl---~t--- 1812 (2004)
-++..++++.+.+|.|+--.+..... .........+. ..+.+..+.. .....++..+..|.++.+.. ..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46788999999999999876543110 01111122222 2334444333 34556888888888776653 21
Q ss_pred ---CceeEEee-ccccCCeEEEEECC---CCCEEEEEECCCeEEEEECCCC-------eEEEEEecCCCCeEEEEEeCCC
Q psy8748 1813 ---GQRIHEVA-QAHIGDVVSISLSP---DGQYFVTGSVDKSCKLWDFREK-------KCVQTFFGHEADVNSVCFHPSG 1878 (2004)
Q Consensus 1813 ---g~~i~~il-~~h~~~ItsLafSP---dg~~LaSGS~DGsIrIWDlrs~-------k~I~tl~~h~s~ItsIafSPdg 1878 (2004)
|..+...+ ......|.++.... ++.+++.++..|.++...+... .....+.. .+.+..+......
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCC
Confidence 22111111 12334566654432 4568999999999999886432 21222322 4455556555556
Q ss_pred CEEEEEECCCeEEEEEccCCce-------eEEEcCCCCCCCeEEEEEcC-------------------------------
Q psy8748 1879 LAFATGSEDKTARLFDIRADQQ-------IATYLPPNKNSGFTSCAVSS------------------------------- 1920 (2004)
Q Consensus 1879 ~~LaSgS~DGtIrIWDLrtgk~-------i~t~~~~~~~s~ItsLafSP------------------------------- 1920 (2004)
..++..+.+|.+..++...-.. +.-+.. .....|..+...+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRL-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEEEECCC-----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEe-CCCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 6788888899988887643111 111111 2223455554443
Q ss_pred ----CCCEEEEEeCCCeEEEEECCCCe---------eeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1921 ----SGRYIFCGSDDNNVHVWDLLKTT---------HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1921 ----dG~~LaSGSsDGsIrIWDL~tge---------~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
++..+++.+..|..+...+.... ....+....+.+..+.+..+...++..+..|.+.-..+
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeH
Confidence 45688999999999988874321 11122223345655544444455555666666555544
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=80.82 E-value=1e+02 Score=36.81 Aligned_cols=237 Identities=7% Similarity=-0.001 Sum_probs=126.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC----ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCC---CCCCCcceE
Q psy8748 1702 GDSRHCVSGSLDGKLIIWDTWTG----NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNN---RDSTGAAKV 1774 (2004)
Q Consensus 1702 PDG~~LASGS~DGtIrVWDl~Tg----k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t---~~~~~~~k~ 1774 (2004)
|+..++++.+.+|.|+--.+.+. .....++. .+.+..+........++..+..|.+.-+.... ......+..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 56678889999999987654311 11111222 34455555555666777777888766555432 211111221
Q ss_pred EE---EEecCccceeee-EEeC---CCcEEEeecCCeEEEEECCCC------ceeEEeeccccCCeEEEEECCCCCEEEE
Q psy8748 1775 IR---ELLGYEGFLSSC-RFID---DTTLLTGSGDMKIVTWNLETG------QRIHEVAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1775 i~---sl~gh~~~Vssv-afsd---d~~LlSgS~DGtI~IWDl~tg------~~i~~il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
+. .+. ....+..+ ...+ +..++.++.+|.++...+..- .-+..+.....+.+..+........++.
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence 11 111 22334433 3322 456899999999999877421 1111111122355555555555667888
Q ss_pred EECCCeEEEEECCCC-------eEEEEEe-cCCCCeEEEEEeCCCC-EEEEEECCCeEEEEEccCC-------ceeEEEc
Q psy8748 1842 GSVDKSCKLWDFREK-------KCVQTFF-GHEADVNSVCFHPSGL-AFATGSEDKTARLFDIRAD-------QQIATYL 1905 (2004)
Q Consensus 1842 GS~DGsIrIWDlrs~-------k~I~tl~-~h~s~ItsIafSPdg~-~LaSgS~DGtIrIWDLrtg-------k~i~t~~ 1905 (2004)
.+.+|.+..++...- +-++-+. .....|.++...+++. .+++.+..|..+..++... +-+....
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence 889999888876421 1122121 2234566665555555 7888888999888877531 1111111
Q ss_pred -CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1906 -PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1906 -~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
.......+..+....++..++..+.+|.+.-+++.
T Consensus 241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 11112234433333334556666777777666654
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=80.40 E-value=1.1e+02 Score=36.75 Aligned_cols=205 Identities=10% Similarity=0.077 Sum_probs=117.4
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEE---ECCCC------ceEEE-ee-CCCCceEEEEEec---CCCEEEEeecCCeE
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIW---DTWTG------NKTQV-IP-LRSAWVMSVAFAQ---SGNFVACGGMDNMC 1758 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVW---Dl~Tg------k~l~t-i~-~Ht~~ItsLafSP---dg~~LaSGS~DGtI 1758 (2004)
+.+..+........++.-+..|.++-. ++..+ ..+.. +. .....|.++...+ +..+++..+.+|.|
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 445555555555667766777776544 34322 21111 11 1244566654443 47899999999999
Q ss_pred EEEEcCCCCCCCc-ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECC--CCce-------eEEeeccccCCeE
Q psy8748 1759 TVYDLNNRDSTGA-AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLE--TGQR-------IHEVAQAHIGDVV 1828 (2004)
Q Consensus 1759 rVWDl~t~~~~~~-~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~--tg~~-------i~~il~~h~~~It 1828 (2004)
+-..+........ ......+......+..........++..+..|.+..+... .-.. ..-+.......|.
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv 201 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLL 201 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEE
T ss_pred EEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEE
Confidence 9998765332111 1111222333333333333455678889999999888776 2111 1111112345677
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCC-------eEEEEEe--cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccC
Q psy8748 1829 SISLSPDGQYFVTGSVDKSCKLWDFREK-------KCVQTFF--GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRA 1897 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS~DGsIrIWDlrs~-------k~I~tl~--~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrt 1897 (2004)
++...+++..++..+..|.++.-.+... +-+..+. ...+.+..+....+...++..+.+|.+..++...
T Consensus 202 ~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 202 SLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 7777777778999999999998875422 1122222 2134455555544555677777888888887643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2004 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-66 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-27 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-47 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-38 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-26 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-25 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-21 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-34 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-21 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-20 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-18 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-29 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-19 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-29 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-14 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-14 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-23 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-18 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-17 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-14 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-23 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-19 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-12 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-23 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-13 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-22 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-18 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-15 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-15 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-22 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-17 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-16 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-22 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-21 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-18 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-21 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-14 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-19 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-13 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-10 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-18 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-15 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-18 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-17 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 5e-16 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-13 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 9e-12 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-16 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-15 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-13 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-12 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-15 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-13 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-11 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-15 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 8e-13 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-09 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-08 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.002 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 4e-11 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 1e-08 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 3e-05 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 3e-05 | |
| d1pjxa_ | 314 | b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph | 4e-04 | |
| d1q7fa_ | 279 | b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D | 9e-04 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 225 bits (573), Expect = 6e-66
Identities = 160/340 (47%), Positives = 234/340 (68%), Gaps = 3/340 (0%)
Query: 1640 QTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVH 1699
+ +L++E QL ++ ++ + AD L +T ++ ++++ +++L+GH+ K+ ++H
Sbjct: 3 ELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMH 62
Query: 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCT 1759
+ DSR VS S DGKLIIWD++T NK IPLRS+WVM+ A+A SGN+VACGG+DN+C+
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV 1819
+Y+L R+ +V REL G+ G+LS CRF+DD ++T SGD W++ET +
Sbjct: 123 IYNLKTREGNV--RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET-GQQTTT 179
Query: 1820 AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL 1879
H GDV+S+SL+PD + FV+G+ D S KLWD RE C QTF GHE+D+N++CF P+G
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239
Query: 1880 AFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939
AFATGS+D T RLFD+RADQ++ TY N G TS + S SGR + G DD N +VWD
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 1940 LKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
LK GVL+GH+NRV+ + ++ +GMA+ T SWD F+K+W
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 111 bits (278), Expect = 8e-27
Identities = 40/184 (21%), Positives = 72/184 (39%), Gaps = 8/184 (4%)
Query: 1713 DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAA 1772
D +WD TG +T + VMS++ A G D ++D+
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG------ 216
Query: 1773 KVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMKI-VTWNLETGQRIHEVAQAHIGDVVSI 1830
+ G+E +++ F + TGS D + + + I + S+
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 1831 SLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTA 1890
S S G+ + G D +C +WD + GH+ V+ + G+A ATGS D
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 1891 RLFD 1894
++++
Sbjct: 337 KIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.4 bits (194), Expect = 5e-16
Identities = 37/242 (15%), Positives = 74/242 (30%), Gaps = 46/242 (19%)
Query: 1789 RFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSC 1848
+ D TL + ++ V +R + H+ + ++ D + V+ S D
Sbjct: 23 KACADATLSQITNNIDPVGRIQMRTRR---TLRGHLAKIYAMHWGTDSRLLVSASQDGKL 79
Query: 1849 KLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN 1908
+WD V + V + + PSG A G D +++++ +
Sbjct: 80 IIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL 139
Query: 1909 K-------------------------------------------NSGFTSCAVSSSGRYI 1925
S +++ R
Sbjct: 140 AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199
Query: 1926 FCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTI 1985
G+ D + +WD+ + +GHE+ + +I PNG A T S D +++
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 1986 VW 1987
Sbjct: 260 EL 261
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.5 bits (158), Expect = 2e-11
Identities = 20/95 (21%), Positives = 37/95 (38%)
Query: 1668 EDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKT 1727
+D T + D + + S I + SV +S R ++G D +WD ++
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 1728 QVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762
V+ V + G VA G D+ +++
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.8 bits (99), Expect = 3e-04
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 1947 VLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
L GH ++ ++ + LV++S D + +W + L +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT---TNKVHAIPLRSSWVMTC 103
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 170 bits (431), Expect = 3e-47
Identities = 70/317 (22%), Positives = 119/317 (37%), Gaps = 28/317 (8%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFA 1743
K +L GH + V V + VS S D + +WD TG+ + + + V ++F
Sbjct: 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68
Query: 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM 1803
SG +A D ++D + S + +++ S D
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGH-----DHNVSSVSIMPNGDHIVSASRDK 123
Query: 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863
I W ++TG + H V + + DG + S D++ ++W K+C
Sbjct: 124 TIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182
Query: 1864 GHEADVNSVCFH--------------------PSGLAFATGSEDKTARLFDIRADQQIAT 1903
H V + + G +GS DKT +++D+ + T
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242
Query: 1904 YLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPN 1963
++ S G++I +DD + VWD L+ HE+ VTS+
Sbjct: 243 L--VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 300
Query: 1964 GMALVTSSWDQFVKVWQ 1980
+VT S DQ VKVW+
Sbjct: 301 APYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 91.7 bits (226), Expect = 3e-20
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 2/171 (1%)
Query: 1821 QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLA 1880
H V + P V+ S D + K+WD+ +T GH V + F SG
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 1881 FATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940
A+ S D T +L+D + + I T + N +S ++ +G +I S D + +W++
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHN--VSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 1941 KTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991
+GH V + + +G + + S DQ V+VW + L+
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.0 bits (115), Expect = 4e-06
Identities = 18/89 (20%), Positives = 32/89 (35%)
Query: 1914 TSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWD 1973
T + S+D + VWD L GH + V IS +G L + S D
Sbjct: 21 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 80
Query: 1974 QFVKVWQESNTIVWKVLKVYNLEKKTIFC 2002
+K+W + + ++ ++
Sbjct: 81 MTIKLWDFQGFECIRTMHGHDHNVSSVSI 109
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.8 bits (112), Expect = 7e-06
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 1947 VLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCVN 2004
LSGH + VT + P +V++S D +KVW + + ++ ++
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW---DYETGDFERTLKGHTDSVQDIS 66
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 145 bits (365), Expect = 7e-38
Identities = 81/347 (23%), Positives = 135/347 (38%), Gaps = 48/347 (13%)
Query: 1675 PDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVI---- 1730
P P+ + H + V V +S D + +G + ++ G+ +
Sbjct: 45 PALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDS 103
Query: 1731 --------------PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIR 1776
P ++ SV F+ G F+A G D + ++D+ NR V+
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-----IVMI 158
Query: 1777 ELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
+ S F L++GSGD + W+L TGQ ++ V++S DG
Sbjct: 159 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS-PGDG 217
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQT-------FFGHEADVNSVCFHPSGLAFATGSEDKT 1889
+Y GS+D++ ++WD V+ GH+ V SV F G + +GS D++
Sbjct: 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 277
Query: 1890 ARLFDIRADQQIATYLPPNK----------NSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939
+L++++ + PN S A + + YI GS D V WD
Sbjct: 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 337
Query: 1940 LKTTHNGVLSGHENRVTSI------SLSPNGMALVTSSWDQFVKVWQ 1980
+L GH N V S+ SL P T S D ++W+
Sbjct: 338 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 112 bits (279), Expect = 1e-26
Identities = 58/286 (20%), Positives = 104/286 (36%), Gaps = 31/286 (10%)
Query: 1678 PKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWV 1737
+ + S + SV +S D + +G+ D + IWD ++ +
Sbjct: 107 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 166
Query: 1738 MSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLL 1797
S+ + SG+ + G D ++DL + + + ++I
Sbjct: 167 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI-----A 221
Query: 1798 TGSGDMKIVTWNLETGQRIH------EVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851
GS D + W+ ETG + E H V S+ + DGQ V+GS+D+S KLW
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
Query: 1852 DFREKK------------CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ 1899
+ + C T+ GH+ V SV + +GS+D+ +D ++
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341
Query: 1900 QIATYLPPNKNSGFTSCAVSSS------GRYIFCGSDDNNVHVWDL 1939
+ + S AV++ GS D +W
Sbjct: 342 PLLML--QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 109 bits (272), Expect = 1e-25
Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 19/225 (8%)
Query: 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVA 1750
H + S+ Y VSGS D + IWD TG + + + G ++A
Sbjct: 162 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 221
Query: 1751 CGGMDNMCTVYDLNNRDSTGAAKVIRE-LLGYEGFLSSCRFI-DDTTLLTGSGDMKIVTW 1808
G +D V+D E G++ + S F D ++++GS D + W
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
Query: 1809 NLETGQRIHE-----------VAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKK 1857
NL+ + H V+S++ + + +Y ++GS D+ WD +
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341
Query: 1858 CVQTFFGHEADVNSVC------FHPSGLAFATGSEDKTARLFDIR 1896
+ GH V SV P FATGS D AR++ +
Sbjct: 342 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.0 bits (237), Expect = 3e-21
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 21/177 (11%)
Query: 1699 HYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLR-------SAWVMSVAFAQSGNFVAC 1751
GD ++ +GSLD + +WD+ TG + + V SV F + G V
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271
Query: 1752 GGMDNMCTVYDLNNRDSTG------AAKVIRELLGYEGFLSSCRFI-DDTTLLTGSGDMK 1804
G +D +++L N ++ + +G++ F+ S +D +L+GS D
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331
Query: 1805 IVTWNLETGQRIHEVAQAHIGDVVSI------SLSPDGQYFVTGSVDKSCKLWDFRE 1855
++ W+ ++G + + Q H V+S+ SL P+ F TGS D ++W +++
Sbjct: 332 VLFWDKKSGNPLLML-QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 134 bits (338), Expect = 1e-34
Identities = 71/339 (20%), Positives = 120/339 (35%), Gaps = 47/339 (13%)
Query: 1681 KLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSV 1740
+L K LKGH + V + VSGS D L +W TG + + + V S
Sbjct: 5 ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63
Query: 1741 AFAQSG-------------------------------NFVACGGMDNMCTVYDLNNRDST 1769
+ + + D R
Sbjct: 64 QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 123
Query: 1770 GAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVS 1829
+L C D +++G+ D + W+ ET +H + Q H
Sbjct: 124 IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL-QGH--TNRV 180
Query: 1830 ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKT 1889
SL DG + V+GS+D S ++WD C+ T GH++ + + + L +G+ D T
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILV--SGNADST 238
Query: 1890 ARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL-----LKTTH 1944
+++DI+ Q + T PNK+ +C + + ++ SDD V +WDL ++
Sbjct: 239 VKIWDIKTGQCLQTLQGPNKHQSAVTC-LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297
Query: 1945 NGVLSGHENRVTSISLSPNGMALVTSSWD----QFVKVW 1979
G V I S + S + + V
Sbjct: 298 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.7 bits (236), Expect = 2e-21
Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 18/217 (8%)
Query: 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVA 1750
+ D R VSG+ D + +WD T + + V S+ F G V
Sbjct: 134 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVV 191
Query: 1751 CGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNL 1810
G +D V+D+ I L G++ S D L++G+ D + W++
Sbjct: 192 SGSLDTSIRVWDVETG------NCIHTLTGHQSLTSGMEL-KDNILVSGNADSTVKIWDI 244
Query: 1811 ETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF-----GH 1865
+TGQ + + + L + + +T S D + KLWD + + ++ G
Sbjct: 245 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 304
Query: 1866 EADVNSVCFHPSGLAFATGSEDKTA----RLFDIRAD 1898
V + + L A GS + T + D D
Sbjct: 305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.3 bits (230), Expect = 1e-20
Identities = 49/250 (19%), Positives = 95/250 (38%), Gaps = 47/250 (18%)
Query: 1768 STGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDV 1827
G K + L G++ + +C +++GS D + W+ TG+ + + H G V
Sbjct: 2 RRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGV 60
Query: 1828 VSISLSPD--------------------------------------GQYFVTGSVDKSCK 1849
S + + + V+GS D + +
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120
Query: 1850 LWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNK 1909
+WD +C+ GH A V V + + G+ D +++D + + T +
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS--GAYDFMVKVWDPETETCLHTL----Q 174
Query: 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVT 1969
++ G ++ GS D ++ VWD+ L+GH++ + + L N LV+
Sbjct: 175 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVS 232
Query: 1970 SSWDQFVKVW 1979
+ D VK+W
Sbjct: 233 GNADSTVKIW 242
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.6 bits (210), Expect = 5e-18
Identities = 48/235 (20%), Positives = 76/235 (32%), Gaps = 49/235 (20%)
Query: 1808 WNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA 1867
W + V + H V++ L G V+GS D + K+W KC++T GH
Sbjct: 1 WRRGELKSPK-VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
Query: 1868 DVNSVCFHPS--------------------------------------GLAFATGSEDKT 1889
V S + +GS D T
Sbjct: 59 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118
Query: 1890 ARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS 1949
R++DI Q + + R + G+ D V VWD T L
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDG----RRVVSGAYDFMVKVWDPETETCLHTLQ 174
Query: 1950 GHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCVN 2004
GH NRV S+ +G+ +V+ S D ++VW + + + +
Sbjct: 175 GHTNRVYSL--QFDGIHVVSGSLDTSIRVW---DVETGNCIHTLTGHQSLTSGME 224
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 119 bits (297), Expect = 3e-29
Identities = 51/296 (17%), Positives = 97/296 (32%), Gaps = 15/296 (5%)
Query: 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLR-----SAWVMSVAFAQ 1744
H V +V S +RH +G G + +WD + ++ S
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMK 1804
G + GG + +++DL A++ S +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS----CCSDG 163
Query: 1805 IVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG 1864
+ Q + Q H I +S DG TG +D + + WD RE +
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQQHD 222
Query: 1865 HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924
+ + S+ + P+G + + ++ + Y S S + G++
Sbjct: 223 FTSQIFSLGYCPTG---EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW 279
Query: 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980
DN ++ W + S + V S +S + +VT S D+ V++
Sbjct: 280 FVSTGKDNLLNAWRT-PYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.9 bits (216), Expect = 9e-19
Identities = 36/259 (13%), Positives = 65/259 (25%), Gaps = 37/259 (14%)
Query: 1673 SMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL 1732
+ + + N + S D + G L IWD L
Sbjct: 78 DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137
Query: 1733 RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI- 1791
S+ A A S + C + + + + T + G S
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197
Query: 1792 -----DDTTLLTGSGDMKIVTWNLETGQRIHEVA-------------------------- 1820
D T+ + + +I +
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257
Query: 1821 ----QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHP 1876
H V+S+ + G++FV+ D W + + V S
Sbjct: 258 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISV 316
Query: 1877 SGLAFATGSEDKTARLFDI 1895
TGS DK A ++++
Sbjct: 317 DDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.1 bits (175), Expect = 1e-13
Identities = 39/201 (19%), Positives = 67/201 (33%), Gaps = 8/201 (3%)
Query: 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW 1851
+ D I ++I+ + H V ++++S ++ TG K+W
Sbjct: 21 GQMQPVPFPPDALIGPGIPRHARQINTLN--HGEVVCAVTISNPTRHVYTGG-KGCVKVW 77
Query: 1852 D-----FREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906
D + + + S P G G E T ++D+ A
Sbjct: 78 DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137
Query: 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMA 1966
+ + A+S + F D N+ VWDL T GH + + I +S +G
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197
Query: 1967 LVTSSWDQFVKVWQESNTIVW 1987
L T D V+ W
Sbjct: 198 LWTGGLDNTVRSWDLREGRQL 218
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (147), Expect = 4e-10
Identities = 32/245 (13%), Positives = 61/245 (24%), Gaps = 44/245 (17%)
Query: 1779 LGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ----AHIGDVVSISLSP 1834
L + + + + T + G + W++ V+Q + S L P
Sbjct: 48 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 1835 DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFD 1894
DG + G + +WD + S + S +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 1895 IRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN---------------------- 1932
Q G + +S+ G ++ G DN
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227
Query: 1933 ------------------NVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQ 1974
+ + L HE+ V S+ + G V++ D
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287
Query: 1975 FVKVW 1979
+ W
Sbjct: 288 LLNAW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 116 bits (291), Expect = 5e-29
Identities = 54/301 (17%), Positives = 99/301 (32%), Gaps = 28/301 (9%)
Query: 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGN 1747
V + Y D + VSG D + IWD T +++ + V+ + + +
Sbjct: 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68
Query: 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVT 1807
+ +T L D + I
Sbjct: 69 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS---------IAV 119
Query: 1808 WNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA 1867
W++ + I + D +Y V+ S D++ K+W+ + V+T GH+
Sbjct: 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 179
Query: 1868 DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFC 1927
+ + + + +GS D T RL+DI + + + + I
Sbjct: 180 GIACLQYRDRLV--VSGSSDNTIRLWDIECGACLRVL----EGHEELVRCIRFDNKRIVS 233
Query: 1928 GSDDNNVHVWDLLKTTHN---------GVLSGHENRVTSISLSPNGMALVTSSWDQFVKV 1978
G+ D + VWDL+ L H RV L + +V+SS D + +
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF--RLQFDEFQIVSSSHDDTILI 291
Query: 1979 W 1979
W
Sbjct: 292 W 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.5 bits (181), Expect = 1e-14
Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 19/162 (11%)
Query: 1699 HYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMC 1758
D ++ VS S D + +W+T T + + + + + V G DN
Sbjct: 143 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTI 200
Query: 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHE 1818
++D+ +R L G+E L C D+ +++G+ D KI W+L
Sbjct: 201 RLWDIECG------ACLRVLEGHE-ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRA 253
Query: 1819 VA--------QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852
A H G V L D V+ S D + +WD
Sbjct: 254 PAGTLCLRTLVEHSGRV--FRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.8 bits (174), Expect = 8e-14
Identities = 34/205 (16%), Positives = 65/205 (31%), Gaps = 46/205 (22%)
Query: 1814 QRIHEVAQAHIGDVVSI-SLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSV 1872
QRIH + L D Q V+G D + K+WD +C + GH V +
Sbjct: 6 QRIH----CRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61
Query: 1873 CFHPSGLAFATGS--------------------------------------EDKTARLFD 1894
+ + + +D++ ++D
Sbjct: 62 QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 1895 IRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR 1954
+ + I + + V +YI S D + VW+ L+GH+
Sbjct: 122 MASPTDITLRRVLVGHRAAVNV-VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 180
Query: 1955 VTSISLSPNGMALVTSSWDQFVKVW 1979
+ + +V+ S D +++W
Sbjct: 181 IACL--QYRDRLVVSGSSDNTIRLW 203
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 12/71 (16%), Positives = 22/71 (30%)
Query: 1917 AVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFV 1976
+ + I G DN + +WD +L+GH V + + +S V
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 79
Query: 1977 KVWQESNTIVW 1987
+
Sbjct: 80 WDVNTGEMLNT 90
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 4e-05
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1666 KLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWD 1720
K+ D+ A++ + ++L H +V + + D VS S D ++IWD
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 101 bits (252), Expect = 3e-23
Identities = 29/308 (9%), Positives = 72/308 (23%), Gaps = 24/308 (7%)
Query: 1690 GHINKVNSVHYSGDSRHCVSGSLDGK--LIIWDTWTGN---KTQVIPLRSAWVMSVAFAQ 1744
++ V GD++ L I+D TG + + A +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIREL-LGYEGFLSSCRFIDDTTLLTGSGDM 1803
+ + + +I + + + F G
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWD-------FREK 1856
I +++E + + + + D + S D F
Sbjct: 160 AIHVYDMEGRKIFAATTENS--HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217
Query: 1857 KCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTAR-----LFDIRADQQIATYLPPNKNS 1911
N P + G D ++ +
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277
Query: 1912 GFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSS 1971
++ Y + + +D+ ++ +N +T + LS + ++
Sbjct: 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDV----KTRKVTEVKNNLTDLRLSADRKTVMVRK 333
Query: 1972 WDQFVKVW 1979
D + +
Sbjct: 334 DDGKIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 86.8 bits (213), Expect = 2e-18
Identities = 22/181 (12%), Positives = 46/181 (25%), Gaps = 14/181 (7%)
Query: 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN-------KTQVIPLRSAWVMSVAF 1742
+ + + DS++ S D N K VIPL
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235
Query: 1743 AQSGNFVACGG-MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGS 1800
G N G ++I L S +
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295
Query: 1801 GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQ 1860
++ ++++T + ++ + LS D + + D + + + +
Sbjct: 296 EKGVLLKYDVKTRK-----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350
Query: 1861 T 1861
T
Sbjct: 351 T 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 84.9 bits (208), Expect = 1e-17
Identities = 31/315 (9%), Positives = 77/315 (24%), Gaps = 36/315 (11%)
Query: 1670 VTASMPDAPKVKLMP-----KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG 1724
+ + + + + ++ V ++ + + V + +++ D TG
Sbjct: 58 FIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG 117
Query: 1725 NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD----STGAAKVIRELLG 1780
T + R A + + + F+A G + K+
Sbjct: 118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 177
Query: 1781 YEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQ------AHIGDVVSISLSP 1834
+ D L S + + EV G L P
Sbjct: 178 NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP 237
Query: 1835 DGQYFVTGSVDKSCKLW-------DFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED 1887
G D + D + + + + + E
Sbjct: 238 RSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEK 297
Query: 1888 KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGV 1947
+D+ +++ + T +S+ + + DD ++ + +
Sbjct: 298 GVLLKYDV-KTRKVTEV-----KNNLTDLRLSADRKTVMVRKDDGKIYTFP--------L 343
Query: 1948 LSGHENRVTSISLSP 1962
+ R P
Sbjct: 344 EKPEDERTVETDKRP 358
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 73.4 bits (178), Expect = 6e-14
Identities = 24/301 (7%), Positives = 56/301 (18%), Gaps = 22/301 (7%)
Query: 1697 SVHYS-GDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD 1755
+ +S D S G+ I D +V + V G
Sbjct: 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTR 63
Query: 1756 NMCTVYDLNN-----RDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNL 1810
+ + + + + D ++T + T
Sbjct: 64 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 123
Query: 1811 ETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVN 1870
+ + + P G V ++ ++D +K +
Sbjct: 124 RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDY 182
Query: 1871 SVCFHPSGLAFATGSEDKTARLFDIRADQQIAT-----YLPPNKNSGFTSCAVSSSGRYI 1925
+ F S D ++ P +
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242
Query: 1926 FCGS-------DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKV 1978
G ++ D L + + +
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 302
Query: 1979 W 1979
+
Sbjct: 303 Y 303
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.1 bits (115), Expect = 4e-06
Identities = 19/162 (11%), Positives = 41/162 (25%), Gaps = 9/162 (5%)
Query: 1831 SLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG--LAFATGSED 1887
SP DG S + + D ++ + V E
Sbjct: 9 DFSPLDGDLIAFVSRGQ-AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREG 65
Query: 1888 KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGV 1947
++D R + + V +G++ +D + DL +
Sbjct: 66 DFLGIYDYRTGKAEKFEENLGNV---FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122
Query: 1948 LSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKV 1989
E +T ++S N + + + +
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 164
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.5 bits (103), Expect = 9e-05
Identities = 14/172 (8%), Positives = 42/172 (24%), Gaps = 5/172 (2%)
Query: 1563 FHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATF 1622
F A S L LS + + ++ + + + + + T
Sbjct: 186 FDADSKNLYYLSYRS-LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK--LVPRSMTS 242
Query: 1623 RDLMMKPTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKL 1682
+ + ++ + + P+ +
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 302
Query: 1683 --MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL 1732
+ + + N + + S D + + DGK+ + + +
Sbjct: 303 YDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 100 bits (249), Expect = 5e-23
Identities = 44/359 (12%), Positives = 109/359 (30%), Gaps = 72/359 (20%)
Query: 1683 MPKK-SLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVA 1741
+P++ +L+GH+ V + + + ++G+ D + ++D+ + V ++
Sbjct: 2 VPQRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 1742 FAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG 1801
+A G V+ + + L + + ++TGS
Sbjct: 61 YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNS----TVRCLDIVEYKNIKYIVTGSR 116
Query: 1802 DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPD--------------------GQYFVT 1841
D + W L + + + H +V + + G V+
Sbjct: 117 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176
Query: 1842 GSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDI------ 1895
GS D + +WD + KC+ GH + S + + S D T R++D+
Sbjct: 177 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 236
Query: 1896 ------------------------------RADQQIATYLPPNKNSGFTSCAVSSSGRYI 1925
D + ++ ++ I
Sbjct: 237 YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNI 296
Query: 1926 FCGSDDNNVHVWDL-----LKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
+N ++++L + + +++ S++ + + D +
Sbjct: 297 LVSGSENQFNIYNLRSGKLVHAN----ILKDADQIWSVNFKGKTL-VAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 90.0 bits (221), Expect = 2e-19
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 2/160 (1%)
Query: 1821 QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLA 1880
+ H+ V++ L + Y +TG+ DK +++D KK + GH+ V ++ + G+
Sbjct: 9 RGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI- 66
Query: 1881 FATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940
+GS D+T R++DI+ + N + +YI GS DN +HVW L
Sbjct: 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126
Query: 1941 KTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980
K + + V V
Sbjct: 127 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 166
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.5 bits (160), Expect = 9e-12
Identities = 40/237 (16%), Positives = 71/237 (29%), Gaps = 14/237 (5%)
Query: 1657 EEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKL 1716
+++ D E + P+ L+GH+ V +V G VSGS D L
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG--NIVVSGSYDNTL 183
Query: 1717 IIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIR 1776
I+WD ++ + + S + MD ++DL N + +
Sbjct: 184 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT 243
Query: 1777 ELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836
L+G + + + H +
Sbjct: 244 ALVGLLRLSDKFLVS---------AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 294
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVCFHPSGLAFATGSEDKTARL 1892
V+GS + +++ R K V + SV F L A +D + L
Sbjct: 295 NILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.3 bits (144), Expect = 9e-10
Identities = 13/72 (18%), Positives = 27/72 (37%)
Query: 1916 CAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQF 1975
+ Y+ G+DD + V+D + LSGH+ V ++ + G+ + S+
Sbjct: 17 TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTV 76
Query: 1976 VKVWQESNTIVW 1987
+
Sbjct: 77 RVWDIKKGCCTH 88
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.1 bits (141), Expect = 2e-09
Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 12/170 (7%)
Query: 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQS 1745
L GH +++ S Y + + C+S S+D + IWD G + +A V + +
Sbjct: 195 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK 254
Query: 1746 GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKI 1805
A + +R + + + F +L + +
Sbjct: 255 FLVSAAADGSIRGWDANDYSRKFSY---------HHTNLSAITTFYVSDNILVSGSENQF 305
Query: 1806 VTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLW--DF 1853
+NL +G+ +H + S++ D L DF
Sbjct: 306 NIYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAAVEKDGQSFLEILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.6 bits (124), Expect = 3e-07
Identities = 29/257 (11%), Positives = 76/257 (29%), Gaps = 23/257 (8%)
Query: 1699 HYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMC 1758
+ ++ V+GS D L +W + + + + + +M
Sbjct: 103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 162
Query: 1759 TVYDLNNRDSTGAA---------------KVIRELLGYE-GFLSSCRFIDDTTLLTGSGD 1802
+V ++ + + K + L G+ S+ + ++ S D
Sbjct: 163 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 222
Query: 1803 MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF 1862
I W+LE G+ ++ + + F+ + +
Sbjct: 223 TTIRIWDLENGELMYTLQGHTALVGLL----RLSDKFLVSAAADGSIRGWDANDYSRKFS 278
Query: 1863 FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922
+ H F+ S +GS + ++++R+ + + + + + S
Sbjct: 279 YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQ-IWSVNF-KGK 335
Query: 1923 RYIFCGSDDNNVHVWDL 1939
+ D + L
Sbjct: 336 TLVAAVEKDGQSFLEIL 352
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 98.9 bits (244), Expect = 8e-23
Identities = 41/298 (13%), Positives = 86/298 (28%), Gaps = 10/298 (3%)
Query: 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP-LRSAWVMSVAFA 1743
+ GH + ++ S D + S +G + WD TG +V P + + + +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM 1803
G+ D++ V +G D + +
Sbjct: 65 SKGDLFTVSWDDHLKVV----PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120
Query: 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863
I ++ + ++ V++S V+T
Sbjct: 121 HIAIYSHGKLTEVP---ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 177
Query: 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR 1923
+ + AT K + T + + S
Sbjct: 178 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237
Query: 1924 YIFCGSDDNNVHVWDLLKTTHNGVLS--GHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
+ GS DN+V VW++ K + + ++ H + + N +V++ D +K W
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 71.9 bits (174), Expect = 1e-13
Identities = 27/174 (15%), Positives = 52/174 (29%), Gaps = 6/174 (3%)
Query: 1815 RIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF-GHEADVNSVC 1873
I +V H + ++S S DG+ + + WD + F H + +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 1874 FHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNN 1933
G F +D + + + + +S AVS+ G +
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 1934 VHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVW 1987
T + ++LS + + D V V++ S V
Sbjct: 123 AIYSHGKLTEVP-----ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS 171
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 100 bits (248), Expect = 1e-22
Identities = 51/374 (13%), Positives = 103/374 (27%), Gaps = 67/374 (17%)
Query: 1679 KVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN------KTQVIPL 1732
KV + + K H + SV VS S DG L +WD + K+ +
Sbjct: 1 KVFIATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV 58
Query: 1733 RSAWVMSVAFAQS-------GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG-- 1783
+ + V Q+ VA Y + D T + L
Sbjct: 59 HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK 118
Query: 1784 --------FLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHI----------- 1824
+ +S + L+ W +
Sbjct: 119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE 178
Query: 1825 ------GDVVSISLSPDGQYFVTGSVDKSCKL------WDFREKKCVQTFFGHEADVNSV 1872
S+ +S G TG + + ++ + + + + SV
Sbjct: 179 SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237
Query: 1873 CFHPSGLAFATGSEDKTA---RLFDIRADQQIATYLPPNK-----------NSGFTSCAV 1918
F P G A + + L++ ++I + P +S S +
Sbjct: 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297
Query: 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRV----TSISLSPNGMALVTSSWDQ 1974
+ SG + D + WD+ L+ H + + +++ +G +L
Sbjct: 298 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357
Query: 1975 FVKVWQESNTIVWK 1988
+ + + +
Sbjct: 358 VKFLKKGWRSGMGA 371
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 86.4 bits (212), Expect = 4e-18
Identities = 29/230 (12%), Positives = 61/230 (26%), Gaps = 47/230 (20%)
Query: 1819 VAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC------VQTFFGHEADVNSV 1872
+AH D+ S+S + V+ S D K+WD + + F H++ ++ V
Sbjct: 9 AGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 1873 CF-------HPSGLAFATGSEDKTARLFDIRADQQIATYLPPN--------KNSGFTSCA 1917
AT S + I + + + K F +
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 1918 VSSSG-----RYIFCGSDDNNVHVWDLLKTTHN------------------GVLSGHENR 1954
+S + ++W
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186
Query: 1955 VTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCVN 2004
TS+ +S G+ + T + V++ + S + + +
Sbjct: 187 ATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.6 bits (189), Expect = 3e-15
Identities = 27/261 (10%), Positives = 65/261 (24%), Gaps = 48/261 (18%)
Query: 1791 IDDTTLLTGSGDMKIVTWNLETGQ-----------RIHEVAQAHIGDVVSISL-SPDGQY 1838
++ ++ SGD + W+ + +H+ H+ + +I + +
Sbjct: 22 ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 81
Query: 1839 FVTGSVDKSCKLWDFREKKCVQTFFGHE----------ADVNSVCFHPSGLA-----FAT 1883
T S + + + + ++ + S
Sbjct: 82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA 141
Query: 1884 GSEDKTARLFDIRADQQIATYLP---------------PNKNSGFTSCAVSSSGRYIFCG 1928
T ++ + L P S F + S I G
Sbjct: 142 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATG 201
Query: 1929 SDDNNVHVWDLLKTTHNGVL------SGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982
++ V + +L + N + S+ SP G L +
Sbjct: 202 FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 261
Query: 1983 NTIVWKVLKVYNLEKKTIFCV 2003
T + + ++ +
Sbjct: 262 ETEFGERIGSLSVPTHSSQAS 282
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.8 bits (187), Expect = 7e-15
Identities = 42/279 (15%), Positives = 81/279 (29%), Gaps = 47/279 (16%)
Query: 1687 SLKGHINKVNSVHYSGDSRHC---VSGSLDGKLIIWDTWTG------------------N 1725
+K H S D V+ + G IW
Sbjct: 116 DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG 175
Query: 1726 KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL 1785
+ S + SV ++ G +A G + + +L+ + ++ +
Sbjct: 176 TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234
Query: 1786 SSCRFIDDTTL-LTGSGD---MKIVTWNLETGQRIHE------------VAQAHIGDVVS 1829
S +F +L I + E G+RI AH V+S
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294
Query: 1830 ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADV----NSVCFHPSGLAFATGS 1885
+S + G+ + D + WD + K+ + T H D+ + + G + A
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
Query: 1886 EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY 1924
L + + + + N + S R+
Sbjct: 355 VFDVKFL-----KKGWRSGMGADLNESLCCVCLDRSIRW 388
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 97.2 bits (240), Expect = 6e-22
Identities = 30/323 (9%), Positives = 73/323 (22%), Gaps = 31/323 (9%)
Query: 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLR---SAWVMSVAF-A 1743
+ + ++ + + S DG L ++ K + ++ F
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM 1803
+ + G + DL S A + D L+ S D
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNE----ANLGICRICKYGDDKLIAASWDG 122
Query: 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPD-----GQYFVTGSVDKSCKLWDFREKKC 1858
I + + + + + G + + + +
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182
Query: 1859 VQTFFGHEAD----VNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP-------- 1906
+ +A S D +
Sbjct: 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242
Query: 1907 -----PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLS 1961
N S S ++++ D + W+L + N + + ++
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIA 301
Query: 1962 PNGMALVTSSWDQFVKVWQESNT 1984
+ L ++ D K +
Sbjct: 302 CSDNILCLATSDDTFKTNAAIDQ 324
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.2 bits (201), Expect = 7e-17
Identities = 27/299 (9%), Positives = 84/299 (28%), Gaps = 28/299 (9%)
Query: 1681 KLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSV 1740
K + + + + ++ ++ + I+ G+ + + + +
Sbjct: 45 KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGI 104
Query: 1741 AFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG---FLSSCRFIDDTTLL 1797
+ ++ R+ ++ L + + L+
Sbjct: 105 CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164
Query: 1798 TGSGDMKIVTWNLETGQRIHEVAQAH---IGDVVSISLSPDGQYFVTGSVDKSCKLWD-- 1852
G + ++ + L + + + L + + + S+D +
Sbjct: 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224
Query: 1853 -------------FREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQ 1899
FR + VNS+ F P T D ++++ +
Sbjct: 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284
Query: 1900 QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI 1958
+I + N++S ++ S + + D+ + T + + + + I
Sbjct: 285 KIKNFAKFNEDS---VVKIACSDNILCLATSDDTFKTNAAIDQT----IELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.7 bits (192), Expect = 8e-16
Identities = 40/280 (14%), Positives = 75/280 (26%), Gaps = 31/280 (11%)
Query: 1728 QVIPLRSA---WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784
Q++ + A ++ + S + + D TVY + + + + L Y+
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV---DLLQSLRYKHP 58
Query: 1785 LSSCRFIDD--TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842
L C FID+ + G+ +I+ +L + + +
Sbjct: 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118
Query: 1843 SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS------EDKTARLFDIR 1896
S D ++ D R + N+ + S + + F +
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178
Query: 1897 ADQQIAT--YLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTT----------- 1943
+ K + C S D V V
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238
Query: 1944 ----HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
N + V SI SP L T+ D + W
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.5 bits (129), Expect = 7e-08
Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 3/77 (3%)
Query: 1914 TSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVL---SGHENRVTSISLSPNGMALVTS 1970
+ + S + S D ++ V+ N L +++ + + N +
Sbjct: 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV 74
Query: 1971 SWDQFVKVWQESNTIVW 1987
Q + +
Sbjct: 75 GTVQGEILKVDLIGSPS 91
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 5e-07
Identities = 10/57 (17%), Positives = 23/57 (40%)
Query: 1947 VLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ ++ ++ I + P+ L+ +SWD + V++ L K + C
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 6e-07
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 1/98 (1%)
Query: 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQ 1744
VNS+ +S + + DG + W+ T K + + V A
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-VVKIAC 302
Query: 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYE 1782
S N + D+ ++ A I + YE
Sbjct: 303 SDNILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYE 340
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 97.6 bits (241), Expect = 7e-22
Identities = 43/333 (12%), Positives = 90/333 (27%), Gaps = 27/333 (8%)
Query: 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLR--SAWVMSVAFAQSGNF 1748
+ ++ ++ D + ++ I++ QV L+ + V V +A N
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 1749 VACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTW 1808
+ G D V+ L R ++R +
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 1809 NLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKK----------- 1857
+ + V+S+ P+ GS D C+++ K+
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 1858 -------CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKN 1910
+ V+ VCF +G A S D T L D +AT ++
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL--ASET 243
Query: 1911 SGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTS 1970
+ + + G D ++ G + S
Sbjct: 244 LPLLAVTFITESSLVAAGHDC-FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ 302
Query: 1971 SWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
+ D+ + + +L K ++ +
Sbjct: 303 NLDKKASSEGSAAAGA----GLDSLHKNSVSQI 331
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 96.5 bits (238), Expect = 2e-21
Identities = 56/327 (17%), Positives = 100/327 (30%), Gaps = 28/327 (8%)
Query: 1676 DAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKT--QVIPLR 1733
+ K + LK H +V V ++ DS V+ D +W VI
Sbjct: 35 EKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI 94
Query: 1734 SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD 1793
+ V +A + A G + ++ + K I++ LS +
Sbjct: 95 NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK-PIRSTVLSLDWHPNS 153
Query: 1794 TTLLTGSGDMKIVTWNLETGQ-----------------RIHEVAQAHIGDVVSISLSPDG 1836
L GS D K ++ + + + + G V + S +G
Sbjct: 154 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 213
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896
S D + L D +K V T + +V F A G + LF
Sbjct: 214 SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFP-VLFTYD 272
Query: 1897 ADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVT 1956
+ ++ +S ++ + D G+ S H+N V+
Sbjct: 273 SAAGKLSFGGRLDVPKQSSQRGLTARERF--QNLDKKASSEGSAAAGA-GLDSLHKNSVS 329
Query: 1957 SISLSPNG----MALVTSSWDQFVKVW 1979
IS+ G T+ D + +W
Sbjct: 330 QISVLSGGKAKCSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 86.5 bits (212), Expect = 4e-18
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 6/165 (3%)
Query: 1821 QAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKK--CVQTFFGHEADVNSVCFHPSG 1878
+ + + + D + +++ K V H V V + P
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 1879 LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938
T D+ A ++ ++ T + N + + + GS + +
Sbjct: 64 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123
Query: 1939 LLKTT----HNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
+ + + V S+ PN + L S D +++
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.5 bits (155), Expect = 4e-11
Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 30/232 (12%)
Query: 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS---------------- 1734
+ V S+ + +S +GS D K I+ + +
Sbjct: 140 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 199
Query: 1735 --AWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID 1792
WV V F+ +G+ VA D+ + D + + + L L + FI
Sbjct: 200 SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM------AVATLASETLPLLAVTFIT 253
Query: 1793 DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852
+++L+ D V + ++ + S ++DK
Sbjct: 254 ESSLVAAGHDCFPVLFTYDSAAGK-LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 312
Query: 1853 FREKKCVQTFFGHEADVNSVCFHPSG----LAFATGSEDKTARLFDIRADQQ 1900
H+ V+ + G F T D ++D+R+ +
Sbjct: 313 -SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.0 bits (151), Expect = 1e-10
Identities = 27/176 (15%), Positives = 53/176 (30%), Gaps = 12/176 (6%)
Query: 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
V+ V +S + S D + + D + + +++V F
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF 251
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD 1802
+ VA G D ++ ++ + G L + + + D
Sbjct: 252 ITESSLVAAGH-DCFPVLFTYDS--AAGKLSFGGRLDVPKQSSQRGLTARERF---QNLD 305
Query: 1803 MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQY----FVTGSVDKSCKLWDFR 1854
K + + + H V IS+ G+ F T +D +WD R
Sbjct: 306 KKASSEG--SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.5 bits (98), Expect = 4e-04
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQ 1744
K S G ++ G + +LD K + + L V ++
Sbjct: 277 KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG-AGLDSLHKNSVSQISVLS 335
Query: 1745 SGNF----VACGGMDNMCTVYDLNNRDST 1769
G GMD +++D+ + +S
Sbjct: 336 GGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.6 bits (233), Expect = 2e-21
Identities = 34/297 (11%), Positives = 87/297 (29%), Gaps = 18/297 (6%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFA 1743
K++ GH + ++ + +SGS DG+++ W + + ++ S ++S+ +
Sbjct: 5 VLKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMHQD-----HSNLIVSLDNS 55
Query: 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM 1803
++ + + D + + + G+ L++ +
Sbjct: 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLIL-------QS 108
Query: 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF 1863
A + + V++ L V D + ++
Sbjct: 109 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 168
Query: 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR 1923
+ A + K + +
Sbjct: 169 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 228
Query: 1924 YIFCGSDDNNVHVWDLLKTTHN-GVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
+ GS D N+ ++ + + L+ H++ V ++ LV+S D +K W
Sbjct: 229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.3 bits (175), Expect = 7e-14
Identities = 10/95 (10%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 1802 DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE-KKCVQ 1860
++ T + + + TGS+D + ++ + K ++
Sbjct: 193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252
Query: 1861 TFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDI 1895
H+ VN++ + + D + +++
Sbjct: 253 ALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.7 bits (145), Expect = 4e-10
Identities = 25/168 (14%), Positives = 59/168 (35%), Gaps = 7/168 (4%)
Query: 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVA 1750
+ ++V S + + + + + A ++ + S ++A
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178
Query: 1751 CGGMDNMCTVYDLNNRDS------TGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMK 1804
G + +YDL +R+ +K+ ++ I++ + TGS D
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238
Query: 1805 IVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852
I ++++ +I + AH V ++ V+ D K W+
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.2 bits (128), Expect = 6e-08
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 11/126 (8%)
Query: 1855 EKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFT 1914
+ ++T GH + ++ +P +GS D + + Q + +
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHS-------NLIV 50
Query: 1915 SCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQ 1974
S S + Y DD + N ++ N L+
Sbjct: 51 SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 110
Query: 1975 FVKVWQ 1980
+
Sbjct: 111 GDIIKS 116
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 1e-07
Identities = 38/275 (13%), Positives = 80/275 (29%), Gaps = 52/275 (18%)
Query: 1770 GAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVS 1829
G +V++ + G+ +++ L++GS D +I+ W+ + Q H +VS
Sbjct: 1 GHDEVLKTISGHNKGITALTV---NPLISGSYDGRIMEWSSSSMH------QDHSNLIVS 51
Query: 1830 ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF--------------------------- 1862
+ S +Y D + + Q
Sbjct: 52 LDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG 111
Query: 1863 ---FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVS 1919
+ S A G E+ +D +++ L + + ++S
Sbjct: 112 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS 171
Query: 1920 SSGRYIFCGSDDNNVHVWDLLKTT-----------HNGVLSGHENRVTSISLSPNGMALV 1968
S YI G + ++DL +S + +
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231
Query: 1969 TSSWDQFVKVWQESNTIVWKVLKVYNLEKKTIFCV 2003
T S D + ++ K++K N K + +
Sbjct: 232 TGSLDTNIFIYSVKRP--MKIIKALNAHKDGVNNL 264
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 89.1 bits (219), Expect = 3e-19
Identities = 35/306 (11%), Positives = 74/306 (24%), Gaps = 38/306 (12%)
Query: 1708 VSGSLDGKLIIWDTWTGNKTQVIPLRSA--WVMSVAFAQSGNFV-ACGGMDNMCTVYDLN 1764
++ + KL++ DT +VI + A M A G A DL
Sbjct: 5 LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64
Query: 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHI 1824
++ G + + + D TL +++ + E + A
Sbjct: 65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET 124
Query: 1825 GDVV----------SISLSPDGQYFVTGSVDKSCKLWDFRE------------------- 1855
++ + DG D +
Sbjct: 125 LSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPD 184
Query: 1856 --KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGF 1913
Q + D+ + + F
Sbjct: 185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF 244
Query: 1914 TSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWD 1973
+ AV+ + F N + +DL K + + S+++S +G +
Sbjct: 245 S-TAVNPAKTRAFG--AYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGAL 300
Query: 1974 QFVKVW 1979
+ +
Sbjct: 301 GDLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 70.2 bits (170), Expect = 5e-13
Identities = 29/264 (10%), Positives = 65/264 (24%), Gaps = 31/264 (11%)
Query: 1680 VKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG-----------NKTQ 1728
+ + + + + + S D + +L + +
Sbjct: 69 LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR 128
Query: 1729 VIPLRSAWVMSVAFAQSGNFVACGGMDNMCT----------------VYDLNNRDSTGAA 1772
+ +A+A+ G+ + G D + + A
Sbjct: 129 KAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV 188
Query: 1773 KVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832
E G D + ++T +LETG+ + S ++
Sbjct: 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV 248
Query: 1833 SPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARL 1892
+P + +D + ++ SV G G
Sbjct: 249 NPAKTR--AFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAA 305
Query: 1893 FDIRADQQIATY-LPPNKNSGFTS 1915
+D ++ LP N + S
Sbjct: 306 YDAETLEKKGQVDLPGNASMSLAS 329
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 62.9 bits (151), Expect = 1e-10
Identities = 19/168 (11%), Positives = 48/168 (28%), Gaps = 17/168 (10%)
Query: 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEAD--VNSVCFHPSG-LAFATGSEDKTARLF 1893
Y + + + D + + +A P G +A+AT ++ ++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 1894 DIRADQQIATYL---PPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS- 1949
D+ + + P + A+S G+ + + + L
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 1950 ----------GHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVW 1987
++T ++ + +G L D V + +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVED 169
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 59.8 bits (143), Expect = 1e-09
Identities = 21/200 (10%), Positives = 47/200 (23%), Gaps = 19/200 (9%)
Query: 1796 LLTGSGDMKIVTWNLETGQRIHEVA-QAHIGDVVSISLSPDGQY-FVTGSVDKSCKLWDF 1853
+L + K+V + E + + ++P G+ + T + +S D
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 1854 REKKCVQTFFGHEAD-----VNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN 1908
+ + + + P G A L
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 1909 KN---------SGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSIS 1959
T A + G ++ D +V + ++
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE---AGTLVEDKPIQSWEAETY 180
Query: 1960 LSPNGMALVTSSWDQFVKVW 1979
P+ +A+ V
Sbjct: 181 AQPDVLAVWNQHESSGVMAT 200
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (110), Expect = 1e-05
Identities = 23/178 (12%), Positives = 47/178 (26%), Gaps = 12/178 (6%)
Query: 1662 QADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDT 1721
D ++ A P V + + + D + L+ D
Sbjct: 167 VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226
Query: 1722 WTGNKTQVIPLRSAWVMS-VAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLG 1780
TG A + N+ +DL I+ +
Sbjct: 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKN------ASIKRVPL 278
Query: 1781 YEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL---SPD 1835
+ S D +T+ G + ++ ET ++ +V + S+ + D
Sbjct: 279 PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.3 bits (214), Expect = 1e-18
Identities = 40/280 (14%), Positives = 80/280 (28%), Gaps = 16/280 (5%)
Query: 1676 DAPKVKLMPKKSLKGHINK-VNSVHYS--GDSRHCVSGSLDGKLIIWDTWTGNKTQVI-- 1730
D K+ P GH + V +V +S S++ SG GK+I+W ++ +
Sbjct: 46 DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV 105
Query: 1731 ------PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784
+ + + +++ G + G ++ +V
Sbjct: 106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC 165
Query: 1785 LSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSV 1844
+ + G + V + SPD FV
Sbjct: 166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 225
Query: 1845 DKSCKLW----DFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ 1900
K ++ FAT D T R++D+ +
Sbjct: 226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 285
Query: 1901 IATYLPPNKNSGFTSCAVSSSG-RYIFCGSDDNNVHVWDL 1939
+ + + G V ++G I S D ++ ++L
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.6 bits (189), Expect = 2e-15
Identities = 38/306 (12%), Positives = 83/306 (27%), Gaps = 19/306 (6%)
Query: 1693 NKVNSVHYSGDSRHCVSGSLDGKLI-IWDTWTGNKTQVIPLR---SAWVMSVAFA--QSG 1746
N + Y + + D V+ S+ V +V F+ +
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 1747 NFVACGGMDN--MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLL---TGSG 1801
++ G + + + ++ V E G +S + + L
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 1802 DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCK---LWDFREKKC 1858
D V + ++G + EV+ +T D S F+
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 1859 VQTFFGHEADVNSVCFHPSG--LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916
+T + V V F P GS+ K + + G
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 1917 AVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLS---PNGMALVTSSWD 1973
+ D + VWD+ + + + ++ + + +++ S D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
Query: 1974 QFVKVW 1979
+ +
Sbjct: 318 GTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.2 bits (128), Expect = 8e-08
Identities = 23/192 (11%), Positives = 42/192 (21%), Gaps = 56/192 (29%)
Query: 1825 GDVVSISLSPDGQYFVTGSVDKSC-KLWDFREKK--CVQTFFGHEAD-VNSVCFHPSGLA 1880
+S P + + D + K V F GH + V +V F P
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK-- 75
Query: 1881 FATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL- 1939
+Y+ G + V VW
Sbjct: 76 ----------------------------------------GSQYLCSGDESGKVIVWGWT 95
Query: 1940 -------LKTTHNGVLSGHENRVTSISLSPNG--MALVTSSWDQFVKVWQESNTIVWKVL 1990
++ ++ IS G + +V D F + +
Sbjct: 96 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV 155
Query: 1991 KVYNLEKKTIFC 2002
++
Sbjct: 156 SGHSQRINACHL 167
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 84.6 bits (207), Expect = 7e-18
Identities = 34/263 (12%), Positives = 70/263 (26%), Gaps = 9/263 (3%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFA 1743
+ H ++ S +C SG + G + IWDT +
Sbjct: 50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI- 108
Query: 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM 1803
+ + S + D
Sbjct: 109 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 168
Query: 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQT-- 1861
V + H V S+ +PDG F + D + L++ +
Sbjct: 169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE 228
Query: 1862 -----FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916
H V + + P G A+ S DKT +++++ + T +P
Sbjct: 229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT-IPVGTRIEDQQL 287
Query: 1917 AVSSSGRYIFCGSDDNNVHVWDL 1939
+ + + + S + ++ +
Sbjct: 288 GIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 82.3 bits (201), Expect = 4e-17
Identities = 29/296 (9%), Positives = 75/296 (25%), Gaps = 14/296 (4%)
Query: 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACG 1752
+ + + + + T++ S + SG + A G
Sbjct: 18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76
Query: 1753 GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLET 1812
+ ++ + + + + G + + ++ + G+ + ++
Sbjct: 77 DVHGNVRIW----DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 132
Query: 1813 GQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNS- 1871
S+ E +
Sbjct: 133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 192
Query: 1872 --VCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN-----KNSGFTSCAVSSSGRY 1924
V ++P G FA+ D T L++ + + + + S G
Sbjct: 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252
Query: 1925 IFCGSDDNNVHVWDLLKTTHNGVLSGHEN-RVTSISLSPNGMALVTSSWDQFVKVW 1979
I S D + +W++ + + + ALV+ S + F+
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 57.2 bits (136), Expect = 7e-09
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 1905 LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNG 1964
LP + +G I + +V+ + T + + H ++ T SP+G
Sbjct: 12 LPRTARGTAVVLGNTPAGDKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG 70
Query: 1965 MALVTSSWDQFVKVWQESNTIVW 1987
+ V++W + T
Sbjct: 71 YYCASGDVHGNVRIWDTTQTTHI 93
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.4 bits (121), Expect = 5e-07
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 1/87 (1%)
Query: 1678 PKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS-AW 1736
V H V + +S D S S D + IW+ T + IP+ +
Sbjct: 224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 283
Query: 1737 VMSVAFAQSGNFVACGGMDNMCTVYDL 1763
+ + + + +
Sbjct: 284 DQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.0 bits (94), Expect = 0.001
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 11/116 (9%)
Query: 1698 VHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNM 1757
GD + +DG + + S V + ++ G +A D
Sbjct: 205 ASTGGDGTIVLYNGVDGT---KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 261
Query: 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI--DDTTLLTGSGDMKIVTWNLE 1811
++++ KV + + I L++ S + I N E
Sbjct: 262 IKIWNVATL------KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 80.6 bits (198), Expect = 5e-16
Identities = 39/290 (13%), Positives = 79/290 (27%), Gaps = 23/290 (7%)
Query: 1708 VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767
V+ G++ + D T V+ A V + SG ++ G D + DL ++
Sbjct: 36 VTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKE 94
Query: 1768 STGAAKVIRELLGYEGFLSSCRFIDDTTLL--TGSGDMKIVTWNLETGQRIH-------- 1817
T A+ I+ +S + + V + ET +
Sbjct: 95 PTTVAE-IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153
Query: 1818 --EVAQAHIGDVVSISLSPDGQYF-VTGSVDKSCKLWDFREKKCVQTFFGHEADV-NSVC 1873
E V +I S F V L D+ + ++T +
Sbjct: 154 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG 213
Query: 1874 FHPSG-LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDN 1932
S + + D + + +A + A + G
Sbjct: 214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF---GPVWA 270
Query: 1933 NVHVWDLLKT---THNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979
H+ D T + ++ + G +L + ++
Sbjct: 271 TSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 72.9 bits (178), Expect = 1e-13
Identities = 35/301 (11%), Positives = 83/301 (27%), Gaps = 25/301 (8%)
Query: 1695 VNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLR-----SAWVMSVAFAQSGNFV 1749
V+ S R+ DGK+ + D W T V ++ + S +
Sbjct: 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123
Query: 1750 -ACGGMDNMCTVYD-----LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLL--TGSG 1801
A + D ST + E +++
Sbjct: 124 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 183
Query: 1802 DMKIVTWNLETGQRIHEVAQAHIGDVVS-ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQ 1860
KI+ + + + + L +YF+T + ++ + ++ +
Sbjct: 184 TGKILLVDYTDLNNLK-TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242
Query: 1861 TFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAV-- 1918
+ + G T+ + D I T + ++ +
Sbjct: 243 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSV-ALIGTDPEGHPDNAWKILDSFP 301
Query: 1919 SSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKV 1978
+ G +F + N+ +++ L+ S+++ + A+ D K
Sbjct: 302 ALGGGSLFIKTHPNSQYLYVDAT------LNPEAEISGSVAV-FDIKAMTGDGSDPEFKT 354
Query: 1979 W 1979
Sbjct: 355 L 355
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 67.1 bits (163), Expect = 9e-12
Identities = 23/216 (10%), Positives = 55/216 (25%), Gaps = 9/216 (4%)
Query: 1791 IDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850
+++ +T +I + T + + + V LS G+Y D +
Sbjct: 30 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNM 87
Query: 1851 WDFREKKC-----VQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQQIATY 1904
D K+ ++ + S A A + D +
Sbjct: 88 IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 147
Query: 1905 LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNG 1964
I S + ++ +T ++ + +
Sbjct: 148 STRGMTYDEQEYHPEPRVAAIL-ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE 206
Query: 1965 MALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTI 2000
L D + + + K++ + E K +
Sbjct: 207 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 63.3 bits (153), Expect = 2e-10
Identities = 23/191 (12%), Positives = 44/191 (23%), Gaps = 17/191 (8%)
Query: 1819 VAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG 1878
VA + + VT L D + A V+ SG
Sbjct: 15 VAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASG 73
Query: 1879 LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGF---TSCAVSSSGRYIF-CGSDDNNV 1934
D + D+ + + TS +Y
Sbjct: 74 RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY 133
Query: 1935 HVWDLLKTTHNGVLS-----------GHENRVTSISLSPNGMALVTSSWD-QFVKVWQES 1982
+ D + S E RV +I S + + + + + +
Sbjct: 134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 193
Query: 1983 NTIVWKVLKVY 1993
+ K ++
Sbjct: 194 DLNNLKTTEIS 204
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 79.0 bits (193), Expect = 8e-16
Identities = 35/288 (12%), Positives = 64/288 (22%), Gaps = 42/288 (14%)
Query: 1690 GHINKVNSVHYSGDSRH-CVSGSLDGKLIIWDTWTGNKTQVIPL------RSAWVMSVAF 1742
+ + D+R V + G + D T T L + S A
Sbjct: 37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI 96
Query: 1743 AQSGNFVACGGMDNMCTVYDLN---------NRDSTGAAKVIRELLGYEGFLSSCRFIDD 1793
+ G V + AK +R D
Sbjct: 97 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156
Query: 1794 TTLLTGSGDMKIVTWN------LETGQRIHEVAQAHIGDVV---------------SISL 1832
+ + G K+ L + A
Sbjct: 157 SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216
Query: 1833 SPDGQYFVTGSVDKSCKLWDFREKKCVQTFFG-HEADVNSVCFHPSGLAFATGSEDKTAR 1891
D Q T + D + K F + P G +
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLA 275
Query: 1892 LFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939
+D++ + I + + A G ++ G N++ V++
Sbjct: 276 KYDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNP 320
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 77.1 bits (188), Expect = 3e-15
Identities = 31/233 (13%), Positives = 62/233 (26%), Gaps = 33/233 (14%)
Query: 1691 HINKVNSVHYSGDSRHCVSGSLDGKLI-------IWDTWTGNKTQVIPLRSAWVMSVAFA 1743
K + + + DG L D TG T +PLR+ W A
Sbjct: 133 LEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN-WNRKGYSA 191
Query: 1744 QSGNFVACGGMD-NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD 1802
+ + ++ R D T
Sbjct: 192 PDVLYFWPHQSPRHEFSMLYTIARFKD----------------------DKQDPATADLL 229
Query: 1803 MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF 1862
++ +L+TG+ + + SP + G +D +++K ++
Sbjct: 230 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAA 288
Query: 1863 FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTS 1915
+ V F G G +F+ +++ P + T+
Sbjct: 289 -NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTT 340
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 71.7 bits (174), Expect = 2e-13
Identities = 15/168 (8%), Positives = 44/168 (26%), Gaps = 10/168 (5%)
Query: 1830 ISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF-FGHEADVNSVCFHPSG-LAFATGSED 1887
+L +Y + + + + D ++ + + P A+ +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 1888 KTARLFDIRADQQIATYLPPNKNSGFTSC----AVSSSGRYIFCGSDDNNVHVWDLLKTT 1943
D+ + + A+S G+ ++ + +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 1944 HNGVL----SGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVW 1987
+ G E + P + L+ ++ D + V +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMD 169
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 67.1 bits (162), Expect = 6e-12
Identities = 15/229 (6%), Positives = 36/229 (15%), Gaps = 41/229 (17%)
Query: 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQY-FVTGSVDKSCKL 1850
++ + + ++ + + ++PD + +V +
Sbjct: 7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66
Query: 1851 WDFREKKCV------QTFFGHEADVNSVCFHPSGLAFATGSEDKTA------------RL 1892
D K + S P G +
Sbjct: 67 IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126
Query: 1893 FDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD--LLKTTHNG---- 1946
F + + G G D + V
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNR 186
Query: 1947 --VLSGHENRV--------------TSISLSPNGMALVTSSWDQFVKVW 1979
+ T + T+
Sbjct: 187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 235
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 78.3 bits (191), Expect = 1e-15
Identities = 29/314 (9%), Positives = 65/314 (20%), Gaps = 49/314 (15%)
Query: 1708 VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVA----------CGGMDNM 1757
+ + + D G +I ++ + A G+F+A G +
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMID--GGFLPNPVVADDGSFIAHASTVFSRIARGERTDY 79
Query: 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLL----TGSGDMKIVTWNLETG 1813
V+D T ++ G + S + +LE
Sbjct: 80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139
Query: 1814 QRIHEVAQA------HIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEA 1867
+ DG + E E
Sbjct: 140 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV----FHPEDEF 195
Query: 1868 DVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTS------------ 1915
+N + + D+ + +
Sbjct: 196 LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 255
Query: 1916 --------CAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNG--M 1965
+ + V V D + + SI++S + +
Sbjct: 256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPL 314
Query: 1966 ALVTSSWDQFVKVW 1979
S+ D+ + +
Sbjct: 315 LYALSTGDKTLYIH 328
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 72.1 bits (175), Expect = 2e-13
Identities = 26/215 (12%), Positives = 59/215 (27%), Gaps = 27/215 (12%)
Query: 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGS-LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF 1742
P + D +G I T + P + A+
Sbjct: 148 PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAY 202
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRD---------------STGAAKVIRELLGY--EGFL 1785
+Q + DL++ D + G + + Y
Sbjct: 203 SQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 262
Query: 1786 SSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQY--FVTGS 1843
+ +V + +TG+R+ + H ++ SI++S D + + +
Sbjct: 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALST 320
Query: 1844 VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG 1878
DK+ + D + +++ + G
Sbjct: 321 GDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 65.6 bits (158), Expect = 2e-11
Identities = 23/214 (10%), Positives = 49/214 (22%), Gaps = 31/214 (14%)
Query: 1798 TGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYF----------VTGSVDKS 1847
+ + + E G+ I + G + + ++ DG + G
Sbjct: 23 HFAAVTQQFVIDGEAGRVIGMI---DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDY 79
Query: 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAF---------ATGSEDKTARLFDIRAD 1898
+++D +A V +P + S + D+
Sbjct: 80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139
Query: 1899 QQIATYLPPNKNSGF-----TSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHEN 1953
P+ F T G + H E
Sbjct: 140 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH----PEDEF 195
Query: 1954 RVTSISLSPNGMALVTSSWDQFVKVWQESNTIVW 1987
+ + S LV ++ + S+
Sbjct: 196 LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK 229
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 77.7 bits (190), Expect = 3e-15
Identities = 25/287 (8%), Positives = 61/287 (21%), Gaps = 49/287 (17%)
Query: 1708 VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVM-------SVAFAQSGNFVACGGM-DNMCT 1759
G + ++D T I L A + S + +
Sbjct: 90 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149
Query: 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIH-- 1817
+ + F T GS + +L
Sbjct: 150 GLSVPGA------SDDQLTKSASCFHIHPG--AAATHYLGSCPASLAASDLAAAPAAAGI 201
Query: 1818 ---EVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCF 1874
+ A + + G + G+E+ + F
Sbjct: 202 VGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNF 261
Query: 1875 HPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNV 1934
+G ++ + + + C + N
Sbjct: 262 RSAGFQMVAKLKNTDGIM-------------------------ILTVEHSRSCLAAAENT 296
Query: 1935 HVWDLLKTTHNGVLSGHENRVTSISLSPNG--MALVTSSWDQFVKVW 1979
+G +S + + +I + +G S+ + + ++
Sbjct: 297 SSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.4 bits (127), Expect = 2e-07
Identities = 20/204 (9%), Positives = 49/204 (24%), Gaps = 32/204 (15%)
Query: 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNK------TQVIPLRSAWVMSVAFAQSGNFVACGG 1753
+ G + GS L D Q ++ + G V
Sbjct: 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA 230
Query: 1754 --------MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS------CRFIDDTTLLTG 1799
T+ + + +G G++ + +
Sbjct: 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL 290
Query: 1800 SGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQY--FVTGSVDKSCKLWDFREKK 1857
+ + GQ ++ + D +I + DG + + + ++D +
Sbjct: 291 AAAENTSSVTASVGQTSGPIS--NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348
Query: 1858 CVQTFFGHEADVNSVCFHPSGLAF 1881
+ + P L+
Sbjct: 349 DQSSV--------ELDKGPESLSV 364
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 70.4 bits (171), Expect = 8e-13
Identities = 48/318 (15%), Positives = 91/318 (28%), Gaps = 35/318 (11%)
Query: 1708 VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767
V+ G++ + D + +VI A V + SG ++ G D + DL ++
Sbjct: 36 VTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE 94
Query: 1768 STGAAKVIRELLGYEGFLSSCRFIDDTTLL--TGSGDMKIVTWNLETGQRIHEVAQ---- 1821
T A+ I+ + SS + + + ET + V+
Sbjct: 95 PTKVAE-IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153
Query: 1822 ------AHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC--VQTFFGHEADVNSVC 1873
V +I S + F+ + L + T G +
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG 213
Query: 1874 FHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFC----GS 1929
+ S F T + + D++++ + K A +Y
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273
Query: 1930 DDNNVHVWDLLKTTH-------NGVLSGHENRVTSISLSPNGMALV-------TSSWDQF 1975
D ++ + H L G I P L + Q
Sbjct: 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333
Query: 1976 VKVWQESN-TIVWKVLKV 1992
V V+ N ++VL +
Sbjct: 334 VAVFDLKNLDAKYQVLPI 351
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 60.0 bits (144), Expect = 2e-09
Identities = 20/216 (9%), Positives = 63/216 (29%), Gaps = 9/216 (4%)
Query: 1791 IDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850
+ + +T +I + ++ + + + V +S G+Y + D +
Sbjct: 30 LPNLFSVTLRDAGQIALVDGDSKKIVKVI--DTGYAVHISRMSASGRYLLVIGRDARIDM 87
Query: 1851 WDFREKKC-----VQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDIRADQQIATY 1904
D K+ ++ + +S A + D +
Sbjct: 88 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147
Query: 1905 LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNG 1964
+ I S ++ + ++ +T +++ + +++
Sbjct: 148 STRGMTVDTQTYHPEPRVAAII-ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA 206
Query: 1965 MALVTSSWDQFVKVWQESNTIVWKVLKVYNLEKKTI 2000
L WD + + + KV + + +++
Sbjct: 207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS 242
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 56.9 bits (136), Expect = 1e-08
Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 9/181 (4%)
Query: 1828 VSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED 1887
L + VT L D KK V+ A V+ SG D
Sbjct: 24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRD 82
Query: 1888 KTARLFDIRADQQIATY---LPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTT 1943
+ D+ A + + S +S RY G+ + D
Sbjct: 83 ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142
Query: 1944 HNGVLSGHENRVTSISLSPNG---MALVTSSWDQFVKVWQESNTI-VWKVLKVYNLEKKT 1999
++S V + + P + + +F+ +E+ + + + NL +
Sbjct: 143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS 202
Query: 2000 I 2000
I
Sbjct: 203 I 203
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.3 bits (93), Expect = 0.002
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 3/99 (3%)
Query: 1894 DIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHEN 1953
++R ++ + P + + D + + D V+
Sbjct: 6 EMRESWKV--LVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-Y 62
Query: 1954 RVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992
V +S +G L+ D + + KV ++
Sbjct: 63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 101
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 63.7 bits (153), Expect = 4e-11
Identities = 35/288 (12%), Positives = 73/288 (25%), Gaps = 12/288 (4%)
Query: 1708 VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFV-ACGGMDNMCTVYDLNNR 1766
++ S + + D + T IP+ + M + G V N ++ D
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64
Query: 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD 1826
+ G + + + + + + +
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-------S 117
Query: 1827 VVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE 1886
+ ++LSPDG+ + K V + P G +
Sbjct: 118 PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF 177
Query: 1887 DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNG 1946
D + + + + + Y+ N T
Sbjct: 178 DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237
Query: 1947 VLSGHENRVTSISLSPNG-MALVTSSWDQFVKVW-QESNTIVWKVLKV 1992
I+++P+G V S+ V V +NTI + V
Sbjct: 238 ARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT-ATMAV 284
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 49.5 bits (116), Expect = 2e-06
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 1808 WNLETGQRIHEVAQAHIGDVVSISLSPDGQY-FVTGSVDKSCKLWDFREKKCVQTFFGHE 1866
+ T + + D I+++PDG+ +V S + + D T
Sbjct: 229 IDTGTNKITARIP--VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM---- 282
Query: 1867 ADVNSVCFHPSGLAFATGS 1885
+V +P GS
Sbjct: 283 ----AVGKNPYASGQFIGS 297
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 7/58 (12%), Positives = 15/58 (25%), Gaps = 2/58 (3%)
Query: 1839 FVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG-LAFATGSEDKTARLFDI 1895
++ S + + D K T + P G + + + D
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT 61
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 56.8 bits (135), Expect = 1e-08
Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 6/200 (3%)
Query: 1794 TTLLTGSGDMKIVTWNLETGQRIHEVAQ-AHIGDVVSISLSPDGQY-FVTGSVDKSCKLW 1851
T + +I WNL + G V + +SPD +Y +V + +
Sbjct: 5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 64
Query: 1852 DFREKKCVQTFFGHEADVNSVC---FHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN 1908
TF A S+ G GS + D +
Sbjct: 65 RIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV 124
Query: 1909 KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLS-PNGMAL 1967
+ A S + + +++ VT++ + P M
Sbjct: 125 EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF 184
Query: 1968 VTSSWDQFVKVWQESNTIVW 1987
+ + S+ VW
Sbjct: 185 HPNEQYAYCVNELNSSVDVW 204
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 46.0 bits (107), Expect = 3e-05
Identities = 29/305 (9%), Positives = 68/305 (22%), Gaps = 26/305 (8%)
Query: 1687 SLKGHINKVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMS---VAF 1742
+ +V + S D R+ V + +++ + + SA S ++
Sbjct: 31 QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST 90
Query: 1743 AQSGNFVACGGMDNMCTVYDLNNRDSTG---------------AAKVIRELLGYEGFLSS 1787
G FV G + L
Sbjct: 91 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD 150
Query: 1788 CRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKS 1847
+ + G + + V D
Sbjct: 151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH 210
Query: 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPS-GLAFATGSEDKTARLFDIRADQQIATYLP 1906
+ + + F + P +A +F + D + +
Sbjct: 211 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG 270
Query: 1907 PNKNSGF-TSCAVSSSGRYIF-CGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNG 1964
V SG+Y+ G +++ V++++ G ++ P
Sbjct: 271 FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGR----YAVGQGPMW 326
Query: 1965 MALVT 1969
+ +
Sbjct: 327 VVVNA 331
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 46.4 bits (110), Expect = 3e-05
Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 21/166 (12%)
Query: 1698 VHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNM 1757
G ++ T+ IP+ F+A G +
Sbjct: 223 AAAVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPT 281
Query: 1758 CTVYDLNNRDSTGAAKV-IRELLGYEGFL----SSCRFIDD-TTLLTGSGDMKIVTWNLE 1811
+V ++ D K+ +R+ + E L F T D ++ WN+
Sbjct: 282 VSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341
Query: 1812 TGQRIHEVAQA--------------HIGDVVSISLSPDGQYFVTGS 1843
+ + + H ++ S DG++ V S
Sbjct: 342 DAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Score = 42.3 bits (98), Expect = 4e-04
Identities = 23/277 (8%), Positives = 57/277 (20%), Gaps = 26/277 (9%)
Query: 1700 YSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMS----VAFAQSGNFVACGGMD 1755
Y V+G G+++ D TG KT + + N + M
Sbjct: 32 YIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR 91
Query: 1756 NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQR 1815
V + + ++ D
Sbjct: 92 LGLLVVQTDGTFEE----IAKKDSEGRRMQGCNDCAFDYEGNLWITAP----AGEVAPAD 143
Query: 1816 IHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFH 1875
Q G + + T + E + +
Sbjct: 144 YTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSY 203
Query: 1876 PSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVH 1935
+ ++++ ++P G + +++
Sbjct: 204 D-------------IKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250
Query: 1936 VWDLLKTTHNGVLSGHENRVTSISLSPNGMAL-VTSS 1971
V+ + + +++ P + VT
Sbjct: 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH 287
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 41.2 bits (95), Expect = 9e-04
Identities = 20/247 (8%), Positives = 68/247 (27%), Gaps = 10/247 (4%)
Query: 1740 VAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLT 1798
VA + + ++ ++D R + + + ++T
Sbjct: 28 VAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVT 87
Query: 1799 GSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKC 1858
+ + GQ + + + +++ G+ V ++D
Sbjct: 88 ERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL 147
Query: 1859 VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAV 1918
+ + + Q + + +
Sbjct: 148 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGI 207
Query: 1919 SSSGRYIFCGSDDNN-VHVWD----LLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWD 1973
+S+G + + +N + ++ L+ + + ++L +G +V +S D
Sbjct: 208 NSNGEILIADNHNNFNLTIFTQDGQLISALESK---VKHAQCFDVALMDDGS-VVLASKD 263
Query: 1974 QFVKVWQ 1980
+ +++
Sbjct: 264 YRLYIYR 270
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2004 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.98 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.87 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.83 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.83 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.83 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.82 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.78 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.73 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.71 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.68 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.67 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.66 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.63 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.62 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.6 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.37 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.35 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.28 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.24 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.07 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.81 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.79 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.79 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.67 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.64 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.63 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.57 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.56 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.54 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.52 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.51 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.48 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.39 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.39 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.35 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.2 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.17 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.15 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.71 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.69 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.59 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.59 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.56 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.47 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.46 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.33 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.19 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.12 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.04 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.96 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.88 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.63 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.55 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.49 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.41 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.32 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.3 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.09 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.08 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.94 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.42 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.98 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 93.95 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 92.92 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.06 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.56 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 91.2 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 90.39 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 90.07 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 89.72 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 89.09 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 88.42 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 83.02 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 82.2 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 81.67 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.3e-37 Score=356.89 Aligned_cols=336 Identities=48% Similarity=0.916 Sum_probs=298.4
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEEC
Q psy8748 1642 AELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDT 1721 (2004)
Q Consensus 1642 ~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl 1721 (2004)
.+++++..++...+...+.......................+..++|+||.+.|++++|+|++++||||+.||+|+|||+
T Consensus 5 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~ 84 (340)
T d1tbga_ 5 DQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 84 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCHHHHTTTSCCCCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHhhccCcccccceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeec
Confidence 45666666776666666655555555555556666666777888999999999999999999999999999999999999
Q ss_pred CCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec
Q psy8748 1722 WTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG 1801 (2004)
Q Consensus 1722 ~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~ 1801 (2004)
.+++.+..+..|...|.+++|+|+++++++|+.|+.+++|+...... .......+.++...........+..+..+..
T Consensus 85 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (340)
T d1tbga_ 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG--NVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162 (340)
T ss_dssp TTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS--CCCEEEEECCCSSCEEEEEEEETTEEEEEET
T ss_pred ccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccc--ccccceecccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999876432 3445566777888888777778888999999
Q ss_pred CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEE
Q psy8748 1802 DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAF 1881 (2004)
Q Consensus 1802 DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~L 1881 (2004)
++....++........ ....+...+....+.+.+.++++|+.||.|++||+++++.+..+.+|...|++++|+|++++|
T Consensus 163 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l 241 (340)
T d1tbga_ 163 DTTCALWDIETGQQTT-TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241 (340)
T ss_dssp TTEEEEEETTTTEEEE-EEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred cccccccccccccccc-cccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEE
Confidence 9999999988776653 345677789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEc
Q psy8748 1882 ATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLS 1961 (2004)
Q Consensus 1882 aSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFS 1961 (2004)
++|+.||.|++||++.......+....+...+.+++|+|+|++|++|+.||.|++||+.+++++..+.+|.+.|++++|+
T Consensus 242 ~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s 321 (340)
T d1tbga_ 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe
Confidence 99999999999999999988888777777889999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCeEEEEE
Q psy8748 1962 PNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1962 PDg~~LaSgS~DGtIrIWd 1980 (2004)
|++.+|++||.||.|++||
T Consensus 322 ~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 322 DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEccCCEEEEeC
Confidence 9999999999999999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.3e-36 Score=336.76 Aligned_cols=289 Identities=26% Similarity=0.419 Sum_probs=265.5
Q ss_pred cccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
..+.+|+||+++|++++|+|++++|+||+.||+|+|||+.+++.+..+.+|...|.+++|++++.++++++.++.+..|+
T Consensus 8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
.... .......++...+.++.+.+ +..+++++.|+.+++||+++++... .+.+|...+.+++|+++++++++
T Consensus 88 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 160 (317)
T d1vyhc1 88 FQGF------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQDGTLIAS 160 (317)
T ss_dssp TTSS------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECTTSSEEEE
T ss_pred cccc------ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeee-EEccCCCcceeeecccCCCEEEE
Confidence 8653 44555677888888888885 4568899999999999999998774 44678899999999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCC--------------------CEEEEEECCCeEEEEEccCCcee
Q psy8748 1842 GSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSG--------------------LAFATGSEDKTARLFDIRADQQI 1901 (2004)
Q Consensus 1842 GS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg--------------------~~LaSgS~DGtIrIWDLrtgk~i 1901 (2004)
++.||.|++|+..+++....+.+|...+.++.|+|++ ..+++++.||.|++||+++++.+
T Consensus 161 ~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 240 (317)
T d1vyhc1 161 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240 (317)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred EeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE
Confidence 9999999999999999999999999999999998753 46899999999999999999998
Q ss_pred EEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1902 ATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1902 ~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
..+. .+...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++++|++|+.||+|++||
T Consensus 241 ~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 241 MTLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEE--CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEe--CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 8874 4667899999999999999999999999999999999999999999999999999999999999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-34 Score=339.23 Aligned_cols=287 Identities=21% Similarity=0.311 Sum_probs=252.4
Q ss_pred cccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCce-----EEEeeCCCCceEEEEEecCCCEEEEeecCCe
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK-----TQVIPLRSAWVMSVAFAQSGNFVACGGMDNM 1757 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~-----l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGt 1757 (2004)
+.++.+ +|...|++++|+|+|++|++|+ ||.|+|||+.++.. ......|.+.|.+++|+|++++|++|+.||.
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~ 120 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence 334455 7999999999999999999997 79999999976532 2233578999999999999999999999999
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
|++||+... .......+..|...+..+.+++++ .+++++.++.|++||+.+++.. .....|...|.+++|++++
T Consensus 121 i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~-~~~~~~~~~v~~l~~s~~~ 195 (337)
T d1gxra_ 121 LSIWDLAAP----TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV-RQFQGHTDGASCIDISNDG 195 (337)
T ss_dssp EEEEECCCC------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTS
T ss_pred ccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence 999998754 335566778888999999998654 5788999999999999998876 4456789999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEE
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSC 1916 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsL 1916 (2004)
..+++|+.||.|++||+++++.+..+ .|...|.+++|+|+++++++|+.||.+++||+++++..... .+...|+++
T Consensus 196 ~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v 271 (337)
T d1gxra_ 196 TKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH---LHESCVLSL 271 (337)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC---CCSSCEEEE
T ss_pred cccccccccccccccccccceeeccc-ccccceEEEEEcccccccceecccccccccccccccccccc---ccccccceE
Confidence 99999999999999999999987766 57889999999999999999999999999999988776443 566789999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1917 AVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1917 afSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
+|+|+|++|++|+.||.|++||+.+++.+..+. |.+.|++++|+|++++|++|+.||+|+|||+
T Consensus 272 ~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 999999999999999999999999999887765 7889999999999999999999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.5e-34 Score=332.65 Aligned_cols=284 Identities=19% Similarity=0.277 Sum_probs=247.8
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCc
Q psy8748 1553 PCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSS 1632 (2004)
Q Consensus 1553 ~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgS 1632 (2004)
.|...|+||+|||+|++||| |+ ||.|+|||+.. ....
T Consensus 49 ~H~~~V~~v~fs~~g~~lat-g~-dg~V~iWd~~~-------------~~~~---------------------------- 85 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYT-GG-KGCVKVWDISH-------------PGNK---------------------------- 85 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEE-EC-BSEEEEEETTS-------------TTCC----------------------------
T ss_pred CCCCcEEEEEECCCCCEEEE-EE-CCEEEEEEccC-------------Cccc----------------------------
Confidence 48899999999999999999 76 89999999977 0000
Q ss_pred chhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeC
Q psy8748 1633 INIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSL 1712 (2004)
Q Consensus 1633 idi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~ 1712 (2004)
.........+|.+.|++++|+|+|++|++|+.
T Consensus 86 ------------------------------------------------~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~ 117 (337)
T d1gxra_ 86 ------------------------------------------------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE 117 (337)
T ss_dssp ------------------------------------------------SCSEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred ------------------------------------------------ceeEEeeecCCCCcEEEEEEcCCCCEEEEeec
Confidence 00011234569999999999999999999999
Q ss_pred CCeEEEEECCCC--ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEE
Q psy8748 1713 DGKLIIWDTWTG--NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRF 1790 (2004)
Q Consensus 1713 DGtIrVWDl~Tg--k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvaf 1790 (2004)
||.|++||+... +....+..|...+.+++|+|++.++++++.|+.|++|++.++ .......+|...+.++.|
T Consensus 118 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~------~~~~~~~~~~~~v~~l~~ 191 (337)
T d1gxra_ 118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDI 191 (337)
T ss_dssp SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccc
Confidence 999999998754 556677889999999999999999999999999999999754 556677888999999999
Q ss_pred eCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCe
Q psy8748 1791 IDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADV 1869 (2004)
Q Consensus 1791 sdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~I 1869 (2004)
+++ ..+++++.||.|++||+++++.+... .+.+.|.+++|+|+++++++|+.||.|++||++.++.. ....|...|
T Consensus 192 s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i 268 (337)
T d1gxra_ 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCV 268 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCE
T ss_pred cccccccccccccccccccccccceeeccc--ccccceEEEEEcccccccceeccccccccccccccccc-ccccccccc
Confidence 854 56888999999999999999877554 67889999999999999999999999999999988765 456899999
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1870 NSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1870 tsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
.+++|+|++++|++|+.||.|++||+.+++.+.... +...|.+++|+|+|++|++|+.||+|+|||+
T Consensus 269 ~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 999999999999999999999999999999887763 4578999999999999999999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.2e-34 Score=334.17 Aligned_cols=286 Identities=27% Similarity=0.477 Sum_probs=241.3
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee------------------CCCCceEEEEEecCCCEE
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP------------------LRSAWVMSVAFAQSGNFV 1749 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~------------------~Ht~~ItsLafSPdg~~L 1749 (2004)
..+|++.|+|++|+|||++||+|+ ||.|+|||+.+++.+..+. .|...|++++|+|++++|
T Consensus 58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence 347999999999999999999987 8999999999998877654 356679999999999999
Q ss_pred EEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeE
Q psy8748 1750 ACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVV 1828 (2004)
Q Consensus 1750 aSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~It 1828 (2004)
++|+.||.|++|+...+ .......+|...+.++.+..+ ..+++++.+|.+++||..+....... .+.....
T Consensus 137 ~s~~~dg~v~i~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~ 208 (388)
T d1erja_ 137 ATGAEDRLIRIWDIENR------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL--SIEDGVT 208 (388)
T ss_dssp EEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEE
T ss_pred eeccccccccccccccc------ccccccccccccccccccccccccccccccceeeeeeecccccccccc--ccccccc
Confidence 99999999999998753 566778889999999999855 46888999999999999988776443 3344455
Q ss_pred EEEECC-CCCEEEEEECCCeEEEEECCCCeEEEEE-------ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce
Q psy8748 1829 SISLSP-DGQYFVTGSVDKSCKLWDFREKKCVQTF-------FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ 1900 (2004)
Q Consensus 1829 sLafSP-dg~~LaSGS~DGsIrIWDlrs~k~I~tl-------~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~ 1900 (2004)
++.+.+ ++++|++|+.||.|++||.+++.....+ .+|...|.+++|+|++++|++|+.||.|++||++++..
T Consensus 209 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 288 (388)
T d1erja_ 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288 (388)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred cccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc
Confidence 555655 8899999999999999999988876655 35788999999999999999999999999999986654
Q ss_pred eEEE----------cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEE------cCCC
Q psy8748 1901 IATY----------LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISL------SPNG 1964 (2004)
Q Consensus 1901 i~t~----------~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaF------SPDg 1964 (2004)
.... ....+...|.+++|+|+|++|++|+.||.|++||+.+++++..+.+|.+.|+++++ +|++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~ 368 (388)
T d1erja_ 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368 (388)
T ss_dssp ----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred ccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCC
Confidence 3221 11345678999999999999999999999999999999999999999999999985 5689
Q ss_pred CEEEEEECCCeEEEEECC
Q psy8748 1965 MALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1965 ~~LaSgS~DGtIrIWdls 1982 (2004)
.+|+||+.||+|+||+++
T Consensus 369 ~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 369 NVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred CEEEEEeCCCEEEEEeee
Confidence 999999999999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.6e-33 Score=330.34 Aligned_cols=302 Identities=21% Similarity=0.306 Sum_probs=242.4
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCc
Q psy8748 1553 PCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSS 1632 (2004)
Q Consensus 1553 ~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgS 1632 (2004)
.|++.|+||+|||||++||+ |+ ||+|+|||+.+ ++....+.++......
T Consensus 60 ~H~~~V~~l~fs~dg~~las-g~-d~~i~iW~~~~-------------~~~~~~~~~~~~~~~~---------------- 108 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLAT-GC-NKTTQVYRVSD-------------GSLVARLSDDSAANKD---------------- 108 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEE-EC-BSCEEEEETTT-------------CCEEEEECC-----------------------
T ss_pred CCCCcEEEEEECCCCCEEEE-Ee-CCeEEEEEecc-------------cceEeeeccccccccc----------------
Confidence 59999999999999999999 76 89999999988 5555554431110000
Q ss_pred chhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeC
Q psy8748 1633 INIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSL 1712 (2004)
Q Consensus 1633 idi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~ 1712 (2004)
..........+|...|++++|+|+|++|++|+.
T Consensus 109 -----------------------------------------------~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~ 141 (388)
T d1erja_ 109 -----------------------------------------------PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 141 (388)
T ss_dssp ---------------------------------------------------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred -----------------------------------------------ccccccccccCCCCCEEEEEECCCCCcceeccc
Confidence 000012234568899999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-
Q psy8748 1713 DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI- 1791 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs- 1791 (2004)
||.|++||..+++......+|...|.+++|++++..+++|+.+|.+++||.... ........+...+....+.
T Consensus 142 dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~~ 215 (388)
T d1erja_ 142 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG------QCSLTLSIEDGVTTVAVSPG 215 (388)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------EEEEEEECSSCEEEEEECST
T ss_pred ccccccccccccccccccccccccccccccccccccccccccceeeeeeecccc------ccccccccccccccccccCC
Confidence 999999999999999999999999999999999999999999999999999753 3333444444444444333
Q ss_pred CCCcEEEeecCCeEEEEECCCCceeEEe------eccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCe--------
Q psy8748 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEV------AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKK-------- 1857 (2004)
Q Consensus 1792 dd~~LlSgS~DGtI~IWDl~tg~~i~~i------l~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k-------- 1857 (2004)
++..+++++.||.|++||..++...... ..+|.+.|.+++|+|++++|++|+.||.|++||++++.
T Consensus 216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 295 (388)
T d1erja_ 216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295 (388)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence 4456888999999999999998876544 24678899999999999999999999999999987543
Q ss_pred ----EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEE------cCCCCEEEE
Q psy8748 1858 ----CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAV------SSSGRYIFC 1927 (2004)
Q Consensus 1858 ----~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLaf------SPdG~~LaS 1927 (2004)
.......|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .|...|.++++ +|++++|++
T Consensus 296 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~--~H~~~V~~~~~~~~~~~spd~~~l~s 373 (388)
T d1erja_ 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--GHRNSVISVAVANGSSLGPEYNVFAT 373 (388)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe--CCCCCEEEEEEecCcccCCCCCEEEE
Confidence 344556788999999999999999999999999999999999998884 56678998875 568999999
Q ss_pred EeCCCeEEEEECC
Q psy8748 1928 GSDDNNVHVWDLL 1940 (2004)
Q Consensus 1928 GSsDGsIrIWDL~ 1940 (2004)
|+.||+|+||+++
T Consensus 374 ~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 374 GSGDCKARIWKYK 386 (388)
T ss_dssp EETTSEEEEEEEE
T ss_pred EeCCCEEEEEeee
Confidence 9999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.8e-33 Score=310.76 Aligned_cols=286 Identities=24% Similarity=0.397 Sum_probs=257.3
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccC
Q psy8748 1549 NAPEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMK 1628 (2004)
Q Consensus 1549 ~a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~s 1628 (2004)
....+|++.|++|+|+|+|++||| |+.||+|+|||+.+ ++
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~~l~s-~s~Dg~i~iWd~~~-------------~~-------------------------- 50 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFSVMVS-ASEDATIKVWDYET-------------GD-------------------------- 50 (317)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEE-EESSSCEEEEETTT-------------CC--------------------------
T ss_pred EEEcCCCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCC-------------CC--------------------------
Confidence 345679999999999999999999 99999999999877 11
Q ss_pred CCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEE
Q psy8748 1629 PTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCV 1708 (2004)
Q Consensus 1629 pdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LA 1708 (2004)
...++.+|.+.|++++|+|++.+++
T Consensus 51 -------------------------------------------------------~~~~~~~h~~~V~~~~~~~~~~~~~ 75 (317)
T d1vyhc1 51 -------------------------------------------------------FERTLKGHTDSVQDISFDHSGKLLA 75 (317)
T ss_dssp -------------------------------------------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred -------------------------------------------------------EEEEEeCCCCcEEEEeeeccccccc
Confidence 1334567999999999999999999
Q ss_pred EEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeee
Q psy8748 1709 SGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSC 1788 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssv 1788 (2004)
+++.++.+.+|+....+....+..|...+.++.|+++++.+++++.|+.+++|++.++ .....+.+|...+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 149 (317)
T d1vyhc1 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG------YCVKTFTGHREWVRMV 149 (317)
T ss_dssp EEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEE
T ss_pred ccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccc------eeeeEEccCCCcceee
Confidence 9999999999999999999889999999999999999999999999999999999754 4566778899999999
Q ss_pred EEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC--------------------CEEEEEECCCe
Q psy8748 1789 RFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG--------------------QYFVTGSVDKS 1847 (2004)
Q Consensus 1789 afsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg--------------------~~LaSGS~DGs 1847 (2004)
.+.++ ..+++++.||.|++|+..+++.... +..|...+.+++|+|++ ..+++|+.||.
T Consensus 150 ~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 228 (317)
T d1vyhc1 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAE-LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228 (317)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred ecccCCCEEEEEeCCCeEEEEeeccceeeEE-EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE
Confidence 99865 5688899999999999999887744 46788889999988753 57899999999
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEE
Q psy8748 1848 CKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFC 1927 (2004)
Q Consensus 1848 IrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaS 1927 (2004)
|++||.++++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .|...|++++|+|++++|++
T Consensus 229 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~V~~~~~s~~~~~l~s 306 (317)
T d1vyhc1 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVT 306 (317)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--CCSSCEEEEEECSSSSCEEE
T ss_pred EEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999988884 56688999999999999999
Q ss_pred EeCCCeEEEEE
Q psy8748 1928 GSDDNNVHVWD 1938 (2004)
Q Consensus 1928 GSsDGsIrIWD 1938 (2004)
|+.||+|++||
T Consensus 307 ~s~Dg~i~iWd 317 (317)
T d1vyhc1 307 GSVDQTVKVWE 317 (317)
T ss_dssp EETTSEEEEEC
T ss_pred EeCCCeEEEeC
Confidence 99999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.6e-32 Score=313.48 Aligned_cols=289 Identities=17% Similarity=0.251 Sum_probs=235.3
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee-CCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP-LRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~-~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
..+.+.||.++|++++|+|||++|++|+.||+|++||+.+++....+. .|...|.+++|+|++++ ++++.|+.+++|+
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVP 82 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEEC
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEec
Confidence 457899999999999999999999999999999999999999888874 68999999999999875 4566789999999
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
.......... .....+...+.++.+.+++.+++++.++.+.+|+..... .. .....+.+++|+|+++++++|
T Consensus 83 ~~~~~~~~~~---~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~---~~--~~~~~~~~~~~s~~~~~l~~g 154 (299)
T d1nr0a2 83 AGGSGVDSSK---AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT---EV--PISYNSSCVALSNDKQFVAVG 154 (299)
T ss_dssp SSSSSSCTTS---CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE---EE--ECSSCEEEEEECTTSCEEEEE
T ss_pred cCCccccccc---ccccccccccccccccccccccccccccccccccccccc---cc--ccccccccccccccccccccc
Confidence 8754322111 122345667788889888888888888999999954322 22 234568899999999999999
Q ss_pred ECCCeEEEEECCCCeEEE-EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEE-cCCCCCCCeEEEEEcC
Q psy8748 1843 SVDKSCKLWDFREKKCVQ-TFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY-LPPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~-tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~-~~~~~~s~ItsLafSP 1920 (2004)
+.||.|++||+++++... ....|...|.+++|+|+++++++++.||.|++||+.++...... ....|...|++++|+|
T Consensus 155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 234 (299)
T d1nr0a2 155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234 (299)
T ss_dssp ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999998876543 34578899999999999999999999999999999887665433 2345678899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeE--EEccC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1921 SGRYIFCGSDDNNVHVWDLLKTTHNG--VLSGH-ENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1921 dG~~LaSGSsDGsIrIWDL~tge~l~--tL~gH-s~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
+|++|++|+.||.|++||+.++.... ....| ...|.++.| +++.+|++|+.||+|++||+.
T Consensus 235 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 99999999999999999998765433 23344 445666655 567899999999999999984
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.2e-32 Score=317.52 Aligned_cols=284 Identities=14% Similarity=0.180 Sum_probs=246.2
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
+.+.+..++++|+|+.|+.++ ++.|.+||+.++.....+.+|...|++++|+|+|++|++|+.||.|++|++....
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~--- 91 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT--- 91 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT---
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc---
Confidence 456677899999999999885 5689999999999999999999999999999999999999999999999998653
Q ss_pred cceEEEEEecCccceeeeEEeCCCc-EEEeec--CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCE-EEEEECCC
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDTT-LLTGSG--DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQY-FVTGSVDK 1846 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~--DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~-LaSGS~DG 1846 (2004)
......+.+|...|.++.|++++. +++++. ++.+++|++++++... .+.+|...|.+++|+|++++ +++|+.||
T Consensus 92 -~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~-~l~~h~~~v~~v~~~~~~~~~l~sgs~d~ 169 (311)
T d1nr0a1 92 -HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG-NLTGQARAMNSVDFKPSRPFRIISGSDDN 169 (311)
T ss_dssp -CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB-CCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred -cccccccccccCccccccccccccccccccccccccccccccccccccc-cccccccccccccccccceeeeccccccc
Confidence 233455778899999999997654 666664 4569999999888764 35788999999999999885 78899999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC-----CCCCCCeEEEEEcCC
Q psy8748 1847 SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP-----PNKNSGFTSCAVSSS 1921 (2004)
Q Consensus 1847 sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~-----~~~~s~ItsLafSPd 1921 (2004)
.|++||+++++....+..|...|.++.|+|+++++++++.||.|++||..++.....+.. ..|...|++++|+|+
T Consensus 170 ~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~ 249 (311)
T d1nr0a1 170 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 249 (311)
T ss_dssp CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred ccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 999999999999999999999999999999999999999999999999999888777643 235678999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEEccCCC---CeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1922 GRYIFCGSDDNNVHVWDLLKTTHNGVLSGHEN---RVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1922 G~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~---~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
|++|++|+.||.|+|||+++++++..+..|.. .+.++.| ++..|++++.||.|++||.+
T Consensus 250 ~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE 311 (311)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence 99999999999999999999999999876653 3445555 56679999999999999975
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-31 Score=305.85 Aligned_cols=285 Identities=17% Similarity=0.258 Sum_probs=223.9
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCC--CceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS--AWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht--~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
.++.+|.+.|++++|+|+ .+|++|+.||+|++|+...++.......+. ..+....+.+++..+++++.||.|++|++
T Consensus 47 ~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~ 125 (355)
T d1nexb2 47 LQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125 (355)
T ss_dssp EEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEEC
T ss_pred EEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEc
Confidence 345679999999999985 589999999999999999988777665443 34556677889999999999999999999
Q ss_pred CCCCCCCc-----------------ceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCC
Q psy8748 1764 NNRDSTGA-----------------AKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD 1826 (2004)
Q Consensus 1764 ~t~~~~~~-----------------~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ 1826 (2004)
........ .........+...+.... .+++.++++..|+.|++||+.+++.+. ...++...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~ 203 (355)
T d1nexb2 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-GHGNIVVSGSYDNTLIVWDVAQMKCLY-ILSGHTDR 203 (355)
T ss_dssp CC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEE-EETTEEEEEETTSCEEEEETTTTEEEE-EECCCSSC
T ss_pred cCCceeccccccceeccceeccccccceeeeeeeccccccccc-cccceeeeecccceeeeeeccccccee-eeeccccc
Confidence 76432111 011112222233333222 245678899999999999999988774 44677888
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC
Q psy8748 1827 VVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1827 ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
+.++.++++++++++++.||.|++||.+++..+..+.+|...|.++++++ +++++|+.||.|++||++++........
T Consensus 204 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 281 (355)
T d1nexb2 204 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHH 281 (355)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecccccccccccccceeccccc
Confidence 99999999999999999999999999999999999999999999999864 6999999999999999998876655421
Q ss_pred CCCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1907 PNKNSGFT-SCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNG-VLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1907 ~~~~s~It-sLafSPdG~~LaSGSsDGsIrIWDL~tge~l~-tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
..+. ...++++++++++| .||.|++||+++++.+. .+.+|.+.|++++|+|+ .++++++.||.++||.+
T Consensus 282 ----~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 282 ----TNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp ----TTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred ----CCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 2233 34567788877776 48999999999999885 46789999999999987 47888999999776643
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-30 Score=294.98 Aligned_cols=321 Identities=24% Similarity=0.380 Sum_probs=259.5
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccC
Q psy8748 1549 NAPEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMK 1628 (2004)
Q Consensus 1549 ~a~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~s 1628 (2004)
....+|.+.|.+ +++++|++||| |+.||+|+|||+.+ ++
T Consensus 10 ~~l~GH~~~V~s-~~~~~g~~l~s-gs~Dg~i~vWd~~~-------------~~-------------------------- 48 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CLQFCGNRIVS-GSDDNTLKVWSAVT-------------GK-------------------------- 48 (342)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEE-EETTSCEEEEETTT-------------CC--------------------------
T ss_pred EEECCcCCceEE-EEEECCCEEEE-EeCCCeEEEEECCC-------------CC--------------------------
Confidence 345679999865 47778999999 99999999999877 22
Q ss_pred CCCcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEE
Q psy8748 1629 PTSSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCV 1708 (2004)
Q Consensus 1629 pdgSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LA 1708 (2004)
+++++.+|.+.|.+++|+++ +|+
T Consensus 49 -------------------------------------------------------~~~~~~~h~~~V~~v~~~~~--~l~ 71 (342)
T d2ovrb2 49 -------------------------------------------------------CLRTLVGHTGGVWSSQMRDN--III 71 (342)
T ss_dssp -------------------------------------------------------EEEECCCCSSCEEEEEEETT--EEE
T ss_pred -------------------------------------------------------EEEEEeCCCCCEEEEEeCCC--ccc
Confidence 13345679999999999975 999
Q ss_pred EEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeee
Q psy8748 1709 SGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSC 1788 (2004)
Q Consensus 1709 SGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssv 1788 (2004)
+|+.|+.+++|+............+...+....+. +..+..+..|+.+.+|+..++. ......... .....
T Consensus 72 s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~------~~~~~~~~~-~~~~~ 142 (342)
T d2ovrb2 72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ------CLHVLMGHV-AAVRC 142 (342)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC------EEEEEECCS-SCEEE
T ss_pred cceecccccccccccccceecccccceeEeeeecc--cccccccccceeEEEeeccccc------ceeeeeccc-cccee
Confidence 99999999999998888877777777777665554 6778889999999999997642 222222222 22333
Q ss_pred EEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC
Q psy8748 1789 RFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEAD 1868 (2004)
Q Consensus 1789 afsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ 1868 (2004)
.......+++++.|+.|++||......... ..+|...+..+.+ ++.++++|+.||.|++||++.++.+..+.+|...
T Consensus 143 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~ 219 (342)
T d2ovrb2 143 VQYDGRRVVSGAYDFMVKVWDPETETCLHT-LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 219 (342)
T ss_dssp EEECSSCEEEEETTSCEEEEEGGGTEEEEE-ECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSC
T ss_pred eccccceeeeecCCCeEEEeecccceeeEE-EcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccc
Confidence 445667899999999999999998877644 4567666665554 6889999999999999999999999999999999
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCC-CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q psy8748 1869 VNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPP-NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGV 1947 (2004)
Q Consensus 1869 ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~-~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~t 1947 (2004)
+.++.+++ +++++|+.||.|++||+...+....+... .+...+.++.+ +++++++|+.||+|++||+++++.+..
T Consensus 220 v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~ 295 (342)
T d2ovrb2 220 TSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRN 295 (342)
T ss_dssp EEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred eeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEE
Confidence 99888765 59999999999999999988887776432 34455666655 567999999999999999999999887
Q ss_pred Ec-----cCCCCeEEEEEcCCCCEEEEEECCCe----EEEEECCC
Q psy8748 1948 LS-----GHENRVTSISLSPNGMALVTSSWDQF----VKVWQESN 1983 (2004)
Q Consensus 1948 L~-----gHs~~VtsLaFSPDg~~LaSgS~DGt----IrIWdlst 1983 (2004)
+. +|.+.|++++|+|++.++++|+.||+ |++||++.
T Consensus 296 ~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 73 57888999999999999999999985 99999875
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.6e-31 Score=315.61 Aligned_cols=286 Identities=18% Similarity=0.228 Sum_probs=236.8
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN--KTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDS 1768 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk--~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~ 1768 (2004)
+.++|+|++|+|||++||+|+.||.|+|||..+++ .+..+++|.++|.+++|+|++++|++|+.|+.|++|++..+
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~-- 83 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-- 83 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT--
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc--
Confidence 34789999999999999999999999999998775 56778899999999999999999999999999999999754
Q ss_pred CCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCcee---EEeeccccCCeEEEEECCCCCEEEEEEC
Q psy8748 1769 TGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRI---HEVAQAHIGDVVSISLSPDGQYFVTGSV 1844 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i---~~il~~h~~~ItsLafSPdg~~LaSGS~ 1844 (2004)
.......+.+|...+.++.|.++ ..+++++.|+.|++|++...... ......|...|.+++|+|++++|++|+.
T Consensus 84 --~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 161 (371)
T d1k8kc_ 84 --TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161 (371)
T ss_dssp --EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred --ccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecccc
Confidence 33445556778889999999855 46889999999999998766532 2335678889999999999999999999
Q ss_pred CCeEEEEECCC------------------CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC
Q psy8748 1845 DKSCKLWDFRE------------------KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1845 DGsIrIWDlrs------------------~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
||.|++||... +..+.....|...|.+++|+|+++++++++.||.|++||+.+++.+..+.
T Consensus 162 D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~- 240 (371)
T d1k8kc_ 162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA- 240 (371)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-
T ss_pred CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeee-
Confidence 99999999753 23566677889999999999999999999999999999999999888874
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCeeeEE-------------------------------------
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDL--LKTTHNGV------------------------------------- 1947 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL--~tge~l~t------------------------------------- 1947 (2004)
.+..+|.+++|+|+|+++++|. |+.+++|.. ..+.....
T Consensus 241 -~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (371)
T d1k8kc_ 241 -SETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGA 318 (371)
T ss_dssp -CSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------C
T ss_pred -cccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccc
Confidence 4557899999999998888765 666666543 22211100
Q ss_pred --EccCCCCeEEEEEcCCC----CEEEEEECCCeEEEEECCC
Q psy8748 1948 --LSGHENRVTSISLSPNG----MALVTSSWDQFVKVWQESN 1983 (2004)
Q Consensus 1948 --L~gHs~~VtsLaFSPDg----~~LaSgS~DGtIrIWdlst 1983 (2004)
...|.+.|+++++.+.+ ..++|+|.||.|++||+++
T Consensus 319 ~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 01388899999998754 3689999999999999865
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.8e-31 Score=307.41 Aligned_cols=247 Identities=18% Similarity=0.247 Sum_probs=209.6
Q ss_pred ccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceE--EEeeCCCCceEEEEEecCCCEEEEeec--CCeEEEE
Q psy8748 1686 KSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKT--QVIPLRSAWVMSVAFAQSGNFVACGGM--DNMCTVY 1761 (2004)
Q Consensus 1686 ~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l--~ti~~Ht~~ItsLafSPdg~~LaSGS~--DGtIrVW 1761 (2004)
+.+.+|.+.|++++|+|+|++||+|+.||+|++||+.++... ..+..|...|.+++|+|+++++++++. ++.+++|
T Consensus 52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~ 131 (311)
T d1nr0a1 52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131 (311)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccc
Confidence 345679999999999999999999999999999999887644 557889999999999999999999875 4569999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYF 1839 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~L 1839 (2004)
+++.+. ....+.+|...|.++.|++++ .+++|+.||.|++||+++++.. .....|...|+++.|+|+++++
T Consensus 132 ~~~~~~------~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~-~~~~~~~~~i~~v~~~p~~~~l 204 (311)
T d1nr0a1 132 LFDTGT------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-STFGEHTKFVHSVRYNPDGSLF 204 (311)
T ss_dssp ETTTCC------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE-EEECCCSSCEEEEEECTTSSEE
T ss_pred cccccc------ccccccccccccccccccccceeeecccccccccccccccccccc-cccccccccccccccCcccccc
Confidence 998653 334567888999999998654 3778999999999999988776 4457889999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEe-------cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCC
Q psy8748 1840 VTGSVDKSCKLWDFREKKCVQTFF-------GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSG 1912 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs~k~I~tl~-------~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ 1912 (2004)
++++.||.|++||.+++..+..+. +|...|.+++|+|++++|++|+.||.|++||+++++.+..+..... ..
T Consensus 205 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~-~~ 283 (311)
T d1nr0a1 205 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR-IE 283 (311)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-GG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC-cc
Confidence 999999999999999988777664 5788999999999999999999999999999999999888754322 22
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1913 FTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1913 ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
...+.+.++++++++++.||.|++||.+
T Consensus 284 ~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 284 DQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp GCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred ceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 2334445556789999999999999963
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.2e-30 Score=292.63 Aligned_cols=283 Identities=19% Similarity=0.324 Sum_probs=237.5
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..+|++.|++++|+|+|++||| |+.||+|+|||+.+ ++.
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~s-gs~Dg~v~iWd~~~-------------~~~--------------------------- 89 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVS-ASQDGKLIIWDSYT-------------TNK--------------------------- 89 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEE-EETTTEEEEEETTT-------------TEE---------------------------
T ss_pred ECCCCCCEEEEEECCCCCEEEE-EECCCceeeeeccc-------------cee---------------------------
Confidence 4579999999999999999999 99999999999877 221
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
...+.+|.+.|++++|+|+++++++|
T Consensus 90 ------------------------------------------------------~~~~~~~~~~v~~v~~~~~~~~l~~~ 115 (340)
T d1tbga_ 90 ------------------------------------------------------VHAIPLRSSWVMTCAYAPSGNYVACG 115 (340)
T ss_dssp ------------------------------------------------------EEEEECSCSCEEEEEECTTSSEEEEE
T ss_pred ------------------------------------------------------EEEEecccccEEeeEeeccceeeeee
Confidence 22345688999999999999999999
Q ss_pred eCCCeEEEEECCCC----ceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcccee
Q psy8748 1711 SLDGKLIIWDTWTG----NKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS 1786 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tg----k~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vs 1786 (2004)
+.|+.+++|+.... .....+.+|.......... .+..+..+..++....|..... ........+...+.
T Consensus 116 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 188 (340)
T d1tbga_ 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETG------QQTTTFTGHTGDVM 188 (340)
T ss_dssp ETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTT------EEEEEEECCSSCEE
T ss_pred cccceeecccccccccccccceecccccccccccccc-cccccccccccccccccccccc------cccccccccceeEe
Confidence 99999999997654 3455667777766655544 4567777888888888887643 33444555566666
Q ss_pred eeEEeC-CCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe--
Q psy8748 1787 SCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF-- 1863 (2004)
Q Consensus 1787 svafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~-- 1863 (2004)
...+.+ ...+++++.|+.|++||+++++.+.. +.+|.+.|++++|+|++++|++|+.||.|++||++.......+.
T Consensus 189 ~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~-~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~ 267 (340)
T d1tbga_ 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267 (340)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTTEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred eeccccccceeEEeecCceEEEEECCCCcEEEE-EeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccc
Confidence 666664 45688899999999999999988754 46899999999999999999999999999999999988777653
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1864 ~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
.+...|.+++|+|++++|++|+.||.|++||+.+++.+..+ .+|...|++++|+|+|++|++|+.||.|++||
T Consensus 268 ~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE--cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 55677999999999999999999999999999999999888 45678899999999999999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=2.1e-30 Score=308.97 Aligned_cols=290 Identities=17% Similarity=0.165 Sum_probs=234.3
Q ss_pred CCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcchh
Q psy8748 1556 EQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSINI 1635 (2004)
Q Consensus 1556 ~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSidi 1635 (2004)
++|+|++|||+|++||+ |+.||.|+|||..+ ++
T Consensus 8 ~pIt~~~~s~dg~~la~-~~~~~~i~iw~~~~-------------~~--------------------------------- 40 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAI-CPNNHEVHIYEKSG-------------NK--------------------------------- 40 (371)
T ss_dssp SCCCEEEECTTSSEEEE-ECSSSEEEEEEEET-------------TE---------------------------------
T ss_pred CCeEEEEECCCCCEEEE-EeCCCEEEEEECCC-------------CC---------------------------------
Confidence 47999999999999999 99999999999866 11
Q ss_pred hhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEeCCCe
Q psy8748 1636 YLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGK 1715 (2004)
Q Consensus 1636 ~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGt 1715 (2004)
+.....|++|.++|++++|+|++++|++|+.||+
T Consensus 41 ----------------------------------------------~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~ 74 (371)
T d1k8kc_ 41 ----------------------------------------------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 74 (371)
T ss_dssp ----------------------------------------------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ----------------------------------------------EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCe
Confidence 0123457789999999999999999999999999
Q ss_pred EEEEECCCCceE--EEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC
Q psy8748 1716 LIIWDTWTGNKT--QVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD 1793 (2004)
Q Consensus 1716 IrVWDl~Tgk~l--~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd 1793 (2004)
|+|||+.++... ..+.+|...|.+++|+|+++.+++|+.|+.|++|+++.... .........+|...+.++.|+++
T Consensus 75 i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~p~ 152 (371)
T d1k8kc_ 75 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--WWVCKHIKKPIRSTVLSLDWHPN 152 (371)
T ss_dssp EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--EEEEEEECTTCCSCEEEEEECTT
T ss_pred EEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccc--ccccccccccccccccccccccc
Confidence 999999877644 44567889999999999999999999999999999976531 22233445678889999999965
Q ss_pred -CcEEEeecCCeEEEEECCCCce-----------------eEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCC
Q psy8748 1794 -TTLLTGSGDMKIVTWNLETGQR-----------------IHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFRE 1855 (2004)
Q Consensus 1794 -~~LlSgS~DGtI~IWDl~tg~~-----------------i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs 1855 (2004)
..+++|+.||.|++||...+.. .......|.+.|.+++|+|+++++++++.||.|++||+.+
T Consensus 153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~ 232 (371)
T d1k8kc_ 153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 232 (371)
T ss_dssp SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec
Confidence 4688899999999999865321 1223457888999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEc------------------------------
Q psy8748 1856 KKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYL------------------------------ 1905 (2004)
Q Consensus 1856 ~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~------------------------------ 1905 (2004)
+..+..+..|..+|.+++|+|+++++++| .|+.+++|+.........+.
T Consensus 233 ~~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
T d1k8kc_ 233 KMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 311 (371)
T ss_dssp TTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred ccceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEe
Confidence 99999999999999999999999877765 57877776654322111110
Q ss_pred ---------CCCCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEECCC
Q psy8748 1906 ---------PPNKNSGFTSCAVSSSG----RYIFCGSDDNNVHVWDLLK 1941 (2004)
Q Consensus 1906 ---------~~~~~s~ItsLafSPdG----~~LaSGSsDGsIrIWDL~t 1941 (2004)
...|...|+++++.+.+ ..+++++.||.|++||+++
T Consensus 312 ~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp ------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 01256678999998754 4689999999999999854
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=1.1e-29 Score=290.03 Aligned_cols=283 Identities=15% Similarity=0.194 Sum_probs=222.4
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
..+|+.+|++++|+|+|++||| |+.||+|++||+.+ +++.+.+
T Consensus 8 ~~GH~~~V~~l~~s~dg~~l~s-~s~Dg~v~vWd~~~-------------~~~~~~~----------------------- 50 (299)
T d1nr0a2 8 RYGHNKAITALSSSADGKTLFS-ADAEGHINSWDIST-------------GISNRVF----------------------- 50 (299)
T ss_dssp ECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTT-------------CCEEECS-----------------------
T ss_pred cCCCCCCcEEEEECCCCCEEEE-EcCCCeEEEEECCC-------------CcEEEEE-----------------------
Confidence 3569999999999999999999 99999999999877 2211111
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSG 1710 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASG 1710 (2004)
..+|.+.|++++|+|+|++ +++
T Consensus 51 ---------------------------------------------------------~~~h~~~v~~v~~~~~g~~-~~~ 72 (299)
T d1nr0a2 51 ---------------------------------------------------------PDVHATMITGIKTTSKGDL-FTV 72 (299)
T ss_dssp ---------------------------------------------------------SCSCSSCEEEEEECTTSCE-EEE
T ss_pred ---------------------------------------------------------cCCCCCcEEEEEeecccee-ecc
Confidence 1358899999999999975 556
Q ss_pred eCCCeEEEEECCCCce---EEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceee
Q psy8748 1711 SLDGKLIIWDTWTGNK---TQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787 (2004)
Q Consensus 1711 S~DGtIrVWDl~Tgk~---l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vss 1787 (2004)
+.|+.+++|+...... ......+...+.+++|+++++.+++++ ++.+++|+... ..... ....+.+
T Consensus 73 ~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--------~~~~~--~~~~~~~ 141 (299)
T d1nr0a2 73 SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--------LTEVP--ISYNSSC 141 (299)
T ss_dssp ETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--------EEEEE--CSSCEEE
T ss_pred cceeeEEEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc--------ccccc--ccccccc
Confidence 6799999999765422 222345677899999999999777665 56799998542 12222 2345667
Q ss_pred eEEeCC-CcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEE---EEe
Q psy8748 1788 CRFIDD-TTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQ---TFF 1863 (2004)
Q Consensus 1788 vafsdd-~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~---tl~ 1863 (2004)
++++++ ..+++|+.||.|++||+++++........|...|++++|+|+++++++++.||.|++||+.++.... .+.
T Consensus 142 ~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 221 (299)
T d1nr0a2 142 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWT 221 (299)
T ss_dssp EEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 788755 4588899999999999998876655556788999999999999999999999999999998765543 445
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCC-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1864 GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN-KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1864 ~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~-~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
+|...|++++|+|++++|++|+.||.|++||++++.......... +...+.++. ++++++|++|+.||+|++||+.
T Consensus 222 ~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 222 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEEEECC
T ss_pred ccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEEecc
Confidence 788999999999999999999999999999999876544443333 344566554 4667899999999999999973
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.3e-29 Score=289.83 Aligned_cols=299 Identities=17% Similarity=0.321 Sum_probs=233.0
Q ss_pred cccccccccce-eEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEc
Q psy8748 1685 KKSLKGHINKV-NSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDL 1763 (2004)
Q Consensus 1685 i~sL~GHt~~V-tsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl 1763 (2004)
+.+|+||.+.| +|++| ++++||||+.||+|+|||+.+++.+..+.+|.+.|.+++|+++ ++|++|+.||.|++|+.
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence 56899999986 56655 5789999999999999999999999999999999999999985 58999999999999999
Q ss_pred CCCCCCCcceEEEEEecC--ccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEe---------------------
Q psy8748 1764 NNRDSTGAAKVIRELLGY--EGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEV--------------------- 1819 (2004)
Q Consensus 1764 ~t~~~~~~~k~i~sl~gh--~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~i--------------------- 1819 (2004)
... ......... ........+.+ ...+++++.||.|++||+.++......
T Consensus 82 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (355)
T d1nexb2 82 KKG------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 155 (355)
T ss_dssp TTT------EEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred ccc------ccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence 764 222222222 22233344443 456888999999999999876543221
Q ss_pred -eccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCC
Q psy8748 1820 -AQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRAD 1898 (2004)
Q Consensus 1820 -l~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtg 1898 (2004)
...|...+. .+.+++++++++..|+.|++||+++++.+....++...+.++.|++++.++++++.||.|++||.+++
T Consensus 156 ~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 233 (355)
T d1nexb2 156 VLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 233 (355)
T ss_dssp EEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC
T ss_pred eeeecccccc--ccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc
Confidence 112222333 34557889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEE-EEcCCCCEEEEEECCCeEE
Q psy8748 1899 QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSI-SLSPNGMALVTSSWDQFVK 1977 (2004)
Q Consensus 1899 k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsL-aFSPDg~~LaSgS~DGtIr 1977 (2004)
..+..+. .|...|.+++++ ++++++|+.||.|++||+.++... +..|...+.++ .+++++.++++| .||.|+
T Consensus 234 ~~~~~~~--~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~ 306 (355)
T d1nexb2 234 ELMYTLQ--GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFN 306 (355)
T ss_dssp CEEEEEC--CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEE
T ss_pred ccccccc--cccccccccccc--cceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEE-eCCEEE
Confidence 9888874 566788998886 579999999999999999887654 44566666665 456777766665 489999
Q ss_pred EEECCCCeEEEEEEeecCCCCccccc
Q psy8748 1978 VWQESNTIVWKVLKVYNLEKKTIFCV 2003 (2004)
Q Consensus 1978 IWdlstg~l~k~Ik~~~~h~~~VtsV 2003 (2004)
+||+++++... .....|.+.|+++
T Consensus 307 vwd~~tg~~~~--~~~~~~~~~V~~v 330 (355)
T d1nexb2 307 IYNLRSGKLVH--ANILKDADQIWSV 330 (355)
T ss_dssp EEETTTCCBCC--SCTTTTCSEEEEE
T ss_pred EEECCCCCEEE--EEecCCCCCEEEE
Confidence 99999986432 2345677777765
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1e-27 Score=272.48 Aligned_cols=302 Identities=25% Similarity=0.413 Sum_probs=240.0
Q ss_pred cccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEE
Q psy8748 1681 KLMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTV 1760 (2004)
Q Consensus 1681 k~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrV 1760 (2004)
+.++.+.|+||++.|.+ +++++|++||||+.||+|+|||+.+++.+..+.+|.+.|.+++|++ +++++|+.|+.+++
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~ 81 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKV 81 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEE
T ss_pred CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceecccccc
Confidence 34567889999999865 4667799999999999999999999999999999999999999986 49999999999999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEE
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~La 1840 (2004)
|+.... ........+...+... .........+..|+.+.+|+..+++...... ..... ...+.+....++
T Consensus 82 ~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~ 151 (342)
T d2ovrb2 82 WNAETG------ECIHTLYGHTSTVRCM-HLHEKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAA--VRCVQYDGRRVV 151 (342)
T ss_dssp EETTTT------EEEEEECCCSSCEEEE-EEETTEEEEEETTSEEEEEESSSCCEEEEEE-CCSSC--EEEEEECSSCEE
T ss_pred cccccc------cceecccccceeEeee-ecccccccccccceeEEEeecccccceeeee-ccccc--ceeeccccceee
Confidence 998753 2333333333334333 3345678889999999999999988765442 22222 223444667889
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC
Q psy8748 1841 TGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1841 SGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP 1920 (2004)
+++.||.|++||.+....+..+.+|...+..+. +++.++++|+.||.|++||++.++.+..+. .+...+.+++++
T Consensus 152 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~- 226 (342)
T d2ovrb2 152 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHTLT--GHQSLTSGMELK- 226 (342)
T ss_dssp EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEEEEC--CCCSCEEEEEEE-
T ss_pred eecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccceeeeEec--ccccceeEEecC-
Confidence 999999999999999999999988877766554 467899999999999999999999888774 455667777665
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEEcc---CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEeec--C
Q psy8748 1921 SGRYIFCGSDDNNVHVWDLLKTTHNGVLSG---HENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVYN--L 1995 (2004)
Q Consensus 1921 dG~~LaSGSsDGsIrIWDL~tge~l~tL~g---Hs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~~--~ 1995 (2004)
++++++|+.||.|++||+...+....+.+ |...+.++.++ ++++++|+.||.|++||+.+++..+.+.... .
T Consensus 227 -~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~ 303 (342)
T d2ovrb2 227 -DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 303 (342)
T ss_dssp -TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGG
T ss_pred -CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCC
Confidence 57999999999999999999988887765 55667777764 5699999999999999999998776665432 4
Q ss_pred CCCccccc
Q psy8748 1996 EKKTIFCV 2003 (2004)
Q Consensus 1996 h~~~VtsV 2003 (2004)
|.+.|+++
T Consensus 304 ~~~~v~~v 311 (342)
T d2ovrb2 304 SGGVVWRI 311 (342)
T ss_dssp GTCEEEEE
T ss_pred CCCCEEEE
Confidence 55667664
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-27 Score=265.99 Aligned_cols=278 Identities=22% Similarity=0.390 Sum_probs=227.7
Q ss_pred ccccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1682 LMPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1682 ~~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
...+....+|...|+|++ +||++||||+.||+|+|||+.+++.+.++.+|.+.|.+++| ++++|++|+.||.|++|
T Consensus 5 ~~~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCCEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence 344566778999999876 57999999999999999999999999999999999999887 58899999999999999
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCcee--EEeeccccCCeEEEEECCCCCEE
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRI--HEVAQAHIGDVVSISLSPDGQYF 1839 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i--~~il~~h~~~ItsLafSPdg~~L 1839 (2004)
++..+. ....... ..............++++..++.+.+||....... ......|...+.++.+. ...+
T Consensus 81 ~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~ 151 (293)
T d1p22a2 81 DVNTGE------MLNTLIH-HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYI 151 (293)
T ss_dssp ESSSCC------EEEEECC-CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEE
T ss_pred cccccc------ccccccc-cccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--cccc
Confidence 997642 2222222 22223334446667999999999999999876543 23346677888887775 5678
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEc
Q psy8748 1840 VTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVS 1919 (2004)
Q Consensus 1840 aSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafS 1919 (2004)
++++.|+.|++||.++++.+..+.++...+..+.++ +.++++++.||.|++||+++.+.+.... .+...+. .++
T Consensus 152 ~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~--~~~ 225 (293)
T d1p22a2 152 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVR--CIR 225 (293)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEE--EEE
T ss_pred ccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeec--ccceeee--ecc
Confidence 899999999999999999999999999999888776 4589999999999999999998888774 3434454 456
Q ss_pred CCCCEEEEEeCCCeEEEEECCC---------CeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q psy8748 1920 SSGRYIFCGSDDNNVHVWDLLK---------TTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQ 1980 (2004)
Q Consensus 1920 PdG~~LaSGSsDGsIrIWDL~t---------ge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWd 1980 (2004)
+++.+|++|+.||.|++||+.. ...+..+.+|.+.|++++| ++.+|+|||.||+|++||
T Consensus 226 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred ccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 7889999999999999999742 4567888999999999999 466899999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=6.5e-28 Score=273.95 Aligned_cols=270 Identities=16% Similarity=0.221 Sum_probs=222.6
Q ss_pred cccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEE
Q psy8748 1683 MPKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYD 1762 (2004)
Q Consensus 1683 ~pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWD 1762 (2004)
+++++|+||.++|++++|+| |+||+.||+|++||+.++ ...|...|.++.|+++ ..+++++.|+++++|+
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNG 73 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETT
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccccccc
Confidence 46789999999999999987 999999999999998764 3579999999999865 4678999999999998
Q ss_pred cCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1763 LNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1763 l~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
+.... ....+.++.+.+++.+++.+.++.+.+|+..+++...... ....+ .++++++..++++
T Consensus 74 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~v~ 136 (287)
T d1pgua2 74 ITKHE-------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR--LNSPG--SAVSLSQNYVAVG 136 (287)
T ss_dssp EEEEE-------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCE--EEEEECSSEEEEE
T ss_pred ccccc-------------cccceeeeeeccCCceEEEeecccceeeeccceeeeeecc--cccee--eeeeccCcceeee
Confidence 75321 2234556777788888888888899999999988775542 23333 4566778888888
Q ss_pred ECCC-eEEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC
Q psy8748 1843 SVDK-SCKLWDFREKKCVQTFF-GHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1843 S~DG-sIrIWDlrs~k~I~tl~-~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP 1920 (2004)
+.++ .+++|++...+....+. .+...+++++|+|++.+|++|+.||.|++||+.++...... ...|...|.+++|+|
T Consensus 137 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~~h~~~v~~~~~~p 215 (287)
T d1pgua2 137 LEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR-WAFRTSKINAISWKP 215 (287)
T ss_dssp ETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC-SCCCSSCEEEEEECC
T ss_pred ccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc-ccccccccceeeecc
Confidence 8775 69999998766655543 46788999999999999999999999999999988765433 346678899999987
Q ss_pred C----------CCEEEEEeCCCeEEEEECCC-CeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1921 S----------GRYIFCGSDDNNVHVWDLLK-TTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1921 d----------G~~LaSGSsDGsIrIWDL~t-ge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
. +.++++|+.||+|++||+.+ ++.+..+.+|.+.|++++|+|++ .|+++|.||.|++|++
T Consensus 216 ~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred cccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 4 56899999999999999976 56677778999999999999986 5899999999999986
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.8e-27 Score=278.96 Aligned_cols=247 Identities=18% Similarity=0.275 Sum_probs=203.3
Q ss_pred ccccc-ccceeEEEEeC--CCCEEEEEeCCCeEEEEECCCCceE--------EEeeCCCCceEEEEEecCCCEEEEeec-
Q psy8748 1687 SLKGH-INKVNSVHYSG--DSRHCVSGSLDGKLIIWDTWTGNKT--------QVIPLRSAWVMSVAFAQSGNFVACGGM- 1754 (2004)
Q Consensus 1687 sL~GH-t~~VtsLaFSP--DG~~LASGS~DGtIrVWDl~Tgk~l--------~ti~~Ht~~ItsLafSPdg~~LaSGS~- 1754 (2004)
.+.+| ...|++++|+| +|++|++|+.||+|+|||+..++.. ..+..|.++|.+++|+++++++++++.
T Consensus 57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~ 136 (325)
T d1pgua1 57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136 (325)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence 34566 46899999998 6789999999999999998755322 234578899999999999999887754
Q ss_pred -CCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEe--eccccCCeEE
Q psy8748 1755 -DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEV--AQAHIGDVVS 1829 (2004)
Q Consensus 1755 -DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~i--l~~h~~~Its 1829 (2004)
++.+++|+.+++ .....+.+|...+.++.|.+++ .+++++.||.+++||...++..... ...|...|.+
T Consensus 137 ~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~ 210 (325)
T d1pgua1 137 RDNFGVFISWDSG------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD 210 (325)
T ss_dssp SSCSEEEEETTTC------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred ccceEEEEeeccc------ccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEE
Confidence 678999998754 4567778899999999998654 3778999999999999887765544 3467788999
Q ss_pred EEECCC-CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEe---CCCCEEEEEECCCeEEEEEccCCceeEEEc
Q psy8748 1830 ISLSPD-GQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFH---PSGLAFATGSEDKTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1830 LafSPd-g~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafS---Pdg~~LaSgS~DGtIrIWDLrtgk~i~t~~ 1905 (2004)
++|+|+ +.++++++.||.|++||+++++.+..+.+|..++.++.|+ ++|++|++++.||.|++||+++++.+..+.
T Consensus 211 v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~ 290 (325)
T d1pgua1 211 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290 (325)
T ss_dssp EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE
Confidence 999996 6889999999999999999999999999998888766666 789999999999999999999999998887
Q ss_pred CCCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEC
Q psy8748 1906 PPNKNSGFTSCAVSSS-GRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1906 ~~~~~s~ItsLafSPd-G~~LaSGSsDGsIrIWDL 1939 (2004)
...+...+..+++.+. +.+|++|+.||.|++||+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 291 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp CCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 6665545544444432 357899999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.8e-26 Score=268.88 Aligned_cols=285 Identities=13% Similarity=0.119 Sum_probs=222.0
Q ss_pred ceeEEEEeCCCCEEEEEeCCC-eEEEEECCCC--ceEEEeeCC-CCceEEEEEec--CCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDG-KLIIWDTWTG--NKTQVIPLR-SAWVMSVAFAQ--SGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DG-tIrVWDl~Tg--k~l~ti~~H-t~~ItsLafSP--dg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
.+++++|+|+|+.|+.++.+. .|+.|+.... .....+.+| ...|++++|+| ++.++++|+.||.|++||+..+.
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 467899999999999886553 3566765443 446667777 46799999998 56799999999999999997654
Q ss_pred CCCc--ceEEEEEecCccceeeeEEeCCCc-EEEee--cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCE-EEE
Q psy8748 1768 STGA--AKVIRELLGYEGFLSSCRFIDDTT-LLTGS--GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQY-FVT 1841 (2004)
Q Consensus 1768 ~~~~--~k~i~sl~gh~~~Vssvafsdd~~-LlSgS--~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~-LaS 1841 (2004)
.... .........+.+.+.++.|++++. +++++ .++.+.+|+.++++.+.. ..+|...|.+++|+|++.+ +++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE-VSGHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEE-CCSCSSCEEEEEECSSSSCEEEE
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccccee-eeecccccccccccccccceEEE
Confidence 3222 222334567888999999996654 55444 467899999999887744 4689999999999998875 678
Q ss_pred EECCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEeCC-CCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEE
Q psy8748 1842 GSVDKSCKLWDFREKKCVQTFF---GHEADVNSVCFHPS-GLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1842 GS~DGsIrIWDlrs~k~I~tl~---~h~s~ItsIafSPd-g~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLa 1917 (2004)
++.||.|++||....+...... .|...|.+++|+|+ +.++++++.||.|++||+++++.+..+. .+...+..+.
T Consensus 178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~--~~~~~v~~~~ 255 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE--DDQEPVQGGI 255 (325)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC--BTTBCCCSCE
T ss_pred eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc--ccccccccce
Confidence 9999999999999887766654 56678999999996 6889999999999999999999888774 3334443333
Q ss_pred Ec---CCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCC--eEEEEEcC-CCCEEEEEECCCeEEEEEC
Q psy8748 1918 VS---SSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR--VTSISLSP-NGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1918 fS---PdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~--VtsLaFSP-Dg~~LaSgS~DGtIrIWdl 1981 (2004)
|+ ++|++|++|+.||.|+|||+++++++..+..|... +..+++.+ .+.+|++|+.||.|++||+
T Consensus 256 ~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred eeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 33 68999999999999999999999999988776654 33444433 2347999999999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6.8e-27 Score=264.31 Aligned_cols=293 Identities=11% Similarity=0.082 Sum_probs=219.0
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE---EeeCCCCceEEEEEecC-CCEEEEeecCCeEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQ---VIPLRSAWVMSVAFAQS-GNFVACGGMDNMCT 1759 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~---ti~~Ht~~ItsLafSPd-g~~LaSGS~DGtIr 1759 (2004)
.+..+++|.+.|++|+|+|++++||+|+.||+|+|||+.++.... ...+|.++|.+++|+|+ +.++++|+.||.|+
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~ 82 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence 355778999999999999999999999999999999987765433 23469999999999986 45899999999999
Q ss_pred EEEcCCCCCCCcceEEEEEecCcc-c-eeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEee---c--cccCCeEEEEE
Q psy8748 1760 VYDLNNRDSTGAAKVIRELLGYEG-F-LSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVA---Q--AHIGDVVSISL 1832 (2004)
Q Consensus 1760 VWDl~t~~~~~~~k~i~sl~gh~~-~-Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il---~--~h~~~ItsLaf 1832 (2004)
+|++.... .......+.. . .......+...+++++.++.+++||++.+....... . ..........+
T Consensus 83 ~w~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (342)
T d1yfqa_ 83 KVDLIGSP------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM 156 (342)
T ss_dssp EECSSSSS------SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred eeeccccc------ccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeee
Confidence 99997643 1122222222 2 223333466789999999999999986544322221 1 12233455677
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeE---EEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEccCCcee------E
Q psy8748 1833 SPDGQYFVTGSVDKSCKLWDFREKKC---VQTFFGHEADVNSVCFHP-SGLAFATGSEDKTARLFDIRADQQI------A 1902 (2004)
Q Consensus 1833 SPdg~~LaSGS~DGsIrIWDlrs~k~---I~tl~~h~s~ItsIafSP-dg~~LaSgS~DGtIrIWDLrtgk~i------~ 1902 (2004)
.+.+..+++++.||.|++||++.... ......+...+.+..+.+ ++..+++++.||.+.+|+....... .
T Consensus 157 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~ 236 (342)
T d1yfqa_ 157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccc
Confidence 77889999999999999999976543 223334455666666655 6778999999999999997643221 1
Q ss_pred EE-------cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q psy8748 1903 TY-------LPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQF 1975 (2004)
Q Consensus 1903 t~-------~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGt 1975 (2004)
.+ ....+...+++++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+..++|+++++++++++.|+.
T Consensus 237 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~ 315 (342)
T d1yfqa_ 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDT 315 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTH
T ss_pred eeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCc
Confidence 11 12234567899999999999999999999999999999999887643 34556788889999999999999
Q ss_pred EEEEECCC
Q psy8748 1976 VKVWQESN 1983 (2004)
Q Consensus 1976 IrIWdlst 1983 (2004)
+++|....
T Consensus 316 ~~~~~~~~ 323 (342)
T d1yfqa_ 316 FKTNAAID 323 (342)
T ss_dssp HHHCSSSC
T ss_pred EEEeeeeC
Confidence 98887643
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.2e-25 Score=246.00 Aligned_cols=273 Identities=22% Similarity=0.388 Sum_probs=221.4
Q ss_pred CCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCC
Q psy8748 1552 EPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTS 1631 (2004)
Q Consensus 1552 e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdg 1631 (2004)
..|+.+|+|++| ||++||| |+.||+|+|||+.+ ++
T Consensus 12 ~~~~~~V~c~~~--d~~~l~s-gs~Dg~i~vWd~~~-------------~~----------------------------- 46 (293)
T d1p22a2 12 SETSKGVYCLQY--DDQKIVS-GLRDNTIKIWDKNT-------------LE----------------------------- 46 (293)
T ss_dssp CSSCCCEEEEEC--CSSEEEE-EESSSCEEEEESSS-------------CC-----------------------------
T ss_pred CCCCCCEEEEEE--cCCEEEE-EeCCCeEEEEECCC-------------Cc-----------------------------
Confidence 457789999765 8999999 99999999999877 22
Q ss_pred cchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe
Q psy8748 1632 SINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS 1711 (2004)
Q Consensus 1632 Sidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS 1711 (2004)
+++++.+|.+.|++++| ++++|++|+
T Consensus 47 ----------------------------------------------------~~~~l~~H~~~V~~v~~--~~~~l~s~s 72 (293)
T d1p22a2 47 ----------------------------------------------------CKRILTGHTGSVLCLQY--DERVIITGS 72 (293)
T ss_dssp ----------------------------------------------------EEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred ----------------------------------------------------EEEEEecCCCCEeeeec--ccceeeccc
Confidence 23456679999999987 578999999
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1712 LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1712 ~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.||.|++|++..+........+.... ..+.+....++++..++.+.+|+..... ..........+...+....+.
T Consensus 73 ~D~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~ 147 (293)
T d1p22a2 73 SDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFD 147 (293)
T ss_dssp TTSCEEEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSS---CCEEEEEECCCSSCEEEEEEE
T ss_pred cccccccccccccccccccccccccc--ccccccccceeecccccceeEeeccccc---cccccccccccccccccceec
Confidence 99999999999998887776655443 3455667889999999999999987653 344455666777777776665
Q ss_pred CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEE
Q psy8748 1792 DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNS 1871 (2004)
Q Consensus 1792 dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~Its 1871 (2004)
...+++++.|+.|++||.++++.+... .++...+..+.++ +.++++++.||.|++||+++...+....++...+.+
T Consensus 148 -~~~~~~~s~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 223 (293)
T d1p22a2 148 -DKYIVSASGDRTIKVWNTSTCEFVRTL-NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC 223 (293)
T ss_dssp -TTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred -ccccccccCCCceeeecCCCCcEEEEE-cccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee
Confidence 446788899999999999999887544 5777788887775 678999999999999999999999999888888765
Q ss_pred EEEeCCCCEEEEEECCCeEEEEEccCC---------ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy8748 1872 VCFHPSGLAFATGSEDKTARLFDIRAD---------QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWD 1938 (2004)
Q Consensus 1872 IafSPdg~~LaSgS~DGtIrIWDLrtg---------k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWD 1938 (2004)
+.+++.+|++|+.||.|++||+.+. ..+..+ ..|...|++++|+ +++|++|+.||+|++||
T Consensus 224 --~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 224 --IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL--VEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp --EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE--CCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred --ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEe--cCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 5567889999999999999997542 234444 4567789999884 67899999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.2e-26 Score=258.71 Aligned_cols=292 Identities=12% Similarity=0.121 Sum_probs=216.9
Q ss_pred CCCCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCC
Q psy8748 1551 PEPCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPT 1630 (2004)
Q Consensus 1551 ~e~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spd 1630 (2004)
...|++.|++|+|||+|++||+ |+.||+|+|||+.. .....
T Consensus 7 ~~~h~d~I~~l~fsp~~~~L~s-~s~Dg~v~iwd~~~-------------~~~~~------------------------- 47 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKSLLLI-TSWDGSLTVYKFDI-------------QAKNV------------------------- 47 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEE-EETTSEEEEEEEET-------------TTTEE-------------------------
T ss_pred CCCCCCCEEEEEEeCCCCEEEE-EECCCeEEEEEccC-------------CCcce-------------------------
Confidence 4568999999999999999999 99999999999976 11000
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCC-CEEEE
Q psy8748 1631 SSINIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDS-RHCVS 1709 (2004)
Q Consensus 1631 gSidi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG-~~LAS 1709 (2004)
......+|.++|.+++|+|++ .+|++
T Consensus 48 -----------------------------------------------------~~~~~~~h~~~V~~v~f~~~~~~~l~s 74 (342)
T d1yfqa_ 48 -----------------------------------------------------DLLQSLRYKHPLLCCNFIDNTDLQIYV 74 (342)
T ss_dssp -----------------------------------------------------EEEEEEECSSCEEEEEEEESSSEEEEE
T ss_pred -----------------------------------------------------EEEEecCCCCCEEEEEEeCCCCCEEEE
Confidence 011223699999999999864 58999
Q ss_pred EeCCCeEEEEECCCCceEEEeeCCCC-ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcc--cee
Q psy8748 1710 GSLDGKLIIWDTWTGNKTQVIPLRSA-WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEG--FLS 1786 (2004)
Q Consensus 1710 GS~DGtIrVWDl~Tgk~l~ti~~Ht~-~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~--~Vs 1786 (2004)
|+.||.|++|+...+........+.. ......+.+++..+++++.++.+++||++..... .........+.. ...
T Consensus 75 g~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~--~~~~~~~~~~~~~~~~~ 152 (342)
T d1yfqa_ 75 GTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG--VIAVKNLNSNNTKVKNK 152 (342)
T ss_dssp EETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB--CEEEEESCSSSSSSCCC
T ss_pred cccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccc--eeeecccccccccceee
Confidence 99999999999998887777665544 3455566778899999999999999998654321 122222222211 222
Q ss_pred eeEE-eCCCcEEEeecCCeEEEEECCCCceeEE--eeccccCCeEEEEECC-CCCEEEEEECCCeEEEEECCCCeE----
Q psy8748 1787 SCRF-IDDTTLLTGSGDMKIVTWNLETGQRIHE--VAQAHIGDVVSISLSP-DGQYFVTGSVDKSCKLWDFREKKC---- 1858 (2004)
Q Consensus 1787 svaf-sdd~~LlSgS~DGtI~IWDl~tg~~i~~--il~~h~~~ItsLafSP-dg~~LaSGS~DGsIrIWDlrs~k~---- 1858 (2004)
...+ .....+++++.||.|++||+..+..... ....+...+.+..+.+ ++..+++++.||.+.+|+......
T Consensus 153 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~ 232 (342)
T d1yfqa_ 153 IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp EEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred eeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeec
Confidence 2233 3566789999999999999987664322 2234445566666655 678999999999999999764321
Q ss_pred -----EEE------EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEE
Q psy8748 1859 -----VQT------FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFC 1927 (2004)
Q Consensus 1859 -----I~t------l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaS 1927 (2004)
... ...|...+++++|+|++++|++|+.||.|++||+++++.+..+.. ......++|+|+|+++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~---~~~~~~~~~s~~~~~l~~ 309 (342)
T d1yfqa_ 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK---FNEDSVVKIACSDNILCL 309 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC---CSSSEEEEEEECSSEEEE
T ss_pred cccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecC---CCCCEEEEEEeCCCEEEE
Confidence 111 124566899999999999999999999999999999988877632 234567889999999999
Q ss_pred EeCCCeEEEEEC
Q psy8748 1928 GSDDNNVHVWDL 1939 (2004)
Q Consensus 1928 GSsDGsIrIWDL 1939 (2004)
|+.|+.+++|..
T Consensus 310 a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 310 ATSDDTFKTNAA 321 (342)
T ss_dssp EEECTHHHHCSS
T ss_pred EEcCCcEEEeee
Confidence 999998888864
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=6e-25 Score=263.50 Aligned_cols=268 Identities=17% Similarity=0.192 Sum_probs=200.4
Q ss_pred cccccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCc------eEEEeeCCCCceEEEEEe---c----CCCEEEE
Q psy8748 1685 KKSLKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGN------KTQVIPLRSAWVMSVAFA---Q----SGNFVAC 1751 (2004)
Q Consensus 1685 i~sL~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk------~l~ti~~Ht~~ItsLafS---P----dg~~LaS 1751 (2004)
....++|.+.|.++++++ ++++||+.||+|+|||..+.. .......|...+..+... + ++..+++
T Consensus 7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 345689999999999864 699999999999999976653 223334455444333321 1 2347789
Q ss_pred eecCCeEEEEEcCCCCCCCcceEEEE----EecCccceeeeEEeC------CCcEEEeecCCeEEEEECCCCce------
Q psy8748 1752 GGMDNMCTVYDLNNRDSTGAAKVIRE----LLGYEGFLSSCRFID------DTTLLTGSGDMKIVTWNLETGQR------ 1815 (2004)
Q Consensus 1752 GS~DGtIrVWDl~t~~~~~~~k~i~s----l~gh~~~Vssvafsd------d~~LlSgS~DGtI~IWDl~tg~~------ 1815 (2004)
++.||.|++|++.............. ...+...+..+.+.. ...+++++.||.+++||+.....
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~ 164 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence 99999999999876543222211111 011233445555543 24588999999999999753210
Q ss_pred --------e---EEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEE------ecCCCCeEEEEEeCCC
Q psy8748 1816 --------I---HEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF------FGHEADVNSVCFHPSG 1878 (2004)
Q Consensus 1816 --------i---~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl------~~h~s~ItsIafSPdg 1878 (2004)
. ......+...+.+++|+|++ +|++|+.||.|++||+.+++.+..+ .+|..+|++++|+|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 243 (393)
T d1sq9a_ 165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243 (393)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence 0 01122345568899999987 8999999999999999999877655 3688999999999999
Q ss_pred CEEEEEECCC---eEEEEEccCCceeEEEcC-----------CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q psy8748 1879 LAFATGSEDK---TARLFDIRADQQIATYLP-----------PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTH 1944 (2004)
Q Consensus 1879 ~~LaSgS~DG---tIrIWDLrtgk~i~t~~~-----------~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~ 1944 (2004)
++|++|+.|+ .|++||+.+++.+..+.. .+|...|++++|+|+|++|++|+.||+|++||+.++++
T Consensus 244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~ 323 (393)
T d1sq9a_ 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323 (393)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence 9999999887 499999999988877632 25778899999999999999999999999999999999
Q ss_pred eEEEccCCCCe
Q psy8748 1945 NGVLSGHENRV 1955 (2004)
Q Consensus 1945 l~tL~gHs~~V 1955 (2004)
+.++.+|.+.|
T Consensus 324 ~~~l~gH~~~v 334 (393)
T d1sq9a_ 324 ITTLNMHCDDI 334 (393)
T ss_dssp EEEEECCGGGC
T ss_pred EEEECCcCCcc
Confidence 99999986544
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=9.2e-25 Score=247.77 Aligned_cols=231 Identities=16% Similarity=0.201 Sum_probs=178.2
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~ 1769 (2004)
+|...|.+++|++++ .+++++.|+++++|++.+. .....+.++.+++++..+++++ ++.+.+|+...+.
T Consensus 44 ~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-- 112 (287)
T d1pgua2 44 DHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-------EFGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGD-- 112 (287)
T ss_dssp CCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-------ECSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCC--
T ss_pred CCCCCEEEEEecCCC-eEEEEeecccccccccccc-------ccccceeeeeeccCCceEEEee-cccceeeecccee--
Confidence 488899999998765 5799999999999986432 2344577888988887777665 5568888876542
Q ss_pred CcceEEEEEecCccceeeeEEeCCCcEEEeecC-CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeE
Q psy8748 1770 GAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD-MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSC 1848 (2004)
Q Consensus 1770 ~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D-GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsI 1848 (2004)
....... .....++.. ++..+++++.+ +.+++|++............+.+.+++++|+|++.+|++|+.||.|
T Consensus 113 ----~~~~~~~-~~~~~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 186 (287)
T d1pgua2 113 ----IIKSVRL-NSPGSAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186 (287)
T ss_dssp ----EEEEEEC-SSCEEEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ----eeeeccc-cceeeeeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccc
Confidence 2333322 233333333 44556666665 5799999987776656666788899999999999999999999999
Q ss_pred EEEECCCCeEEE-EEecCCCCeEEEEEeCC----------CCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEE
Q psy8748 1849 KLWDFREKKCVQ-TFFGHEADVNSVCFHPS----------GLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCA 1917 (2004)
Q Consensus 1849 rIWDlrs~k~I~-tl~~h~s~ItsIafSPd----------g~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLa 1917 (2004)
++||+.++.... .+.+|...|.+++|+|. +.++++|+.||+|++||++++....... ..|...|++++
T Consensus 187 ~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~-~~h~~~V~~v~ 265 (287)
T d1pgua2 187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-NAHKDGVNNLL 265 (287)
T ss_dssp EEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET-TSSTTCEEEEE
T ss_pred cceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe-CCCCCCeEEEE
Confidence 999999988654 35788999999999874 4689999999999999998755443332 46778999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEC
Q psy8748 1918 VSSSGRYIFCGSDDNNVHVWDL 1939 (2004)
Q Consensus 1918 fSPdG~~LaSGSsDGsIrIWDL 1939 (2004)
|+|++ .+++++.||.|++|++
T Consensus 266 ~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 266 WETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEETT-EEEEEETTSCEEEEEE
T ss_pred ECCCC-EEEEEECCCeEEEEEE
Confidence 99986 5888999999999996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=1e-25 Score=260.52 Aligned_cols=281 Identities=13% Similarity=0.070 Sum_probs=210.7
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCC--eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCC
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGSLDG--KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS~DG--tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~ 1767 (2004)
+|...|++++|+|||++|++++.+. .|++||..+++.. .+..|...|.+++|+|+++++++++.++.+++|+...+
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~- 117 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG- 117 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceecccccccccccccc-
Confidence 4788999999999999998776553 7999999877655 56779999999999999999999999999999999764
Q ss_pred CCCcceEEEEEecCccceeeeEEeCCCc-EEE----------eecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFIDDTT-LLT----------GSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlS----------gS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
........+...+.+++|++++. ++. +..++.+++||..+++... ...+...+..++|+|+|
T Consensus 118 -----~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~--~~~~~~~~~~~~~spdg 190 (360)
T d1k32a3 118 -----KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA--ATTENSHDYAPAFDADS 190 (360)
T ss_dssp -----CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE--CSCSSSBEEEEEECTTS
T ss_pred -----ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee--ecccccccccccccCCC
Confidence 44556677888889999997665 432 3345679999999887653 23566778999999999
Q ss_pred CEEEEEECCCeEEEEECCCCe-------EEEEEecCCCCeEEEEEeCCCCEEEEEECCC-----eEEEEEccCCceeEEE
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKK-------CVQTFFGHEADVNSVCFHPSGLAFATGSEDK-----TARLFDIRADQQIATY 1904 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k-------~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG-----tIrIWDLrtgk~i~t~ 1904 (2004)
++|++++.++.+.+||..... ....+..+...+..+.|++++..+.++..+. .+..++...+......
T Consensus 191 ~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (360)
T d1k32a3 191 KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII 270 (360)
T ss_dssp CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEE
T ss_pred CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEee
Confidence 999999999999999976543 2333444555556667777776665554332 2444444444433222
Q ss_pred cCCCCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q psy8748 1905 LPPNKNSGFTSCAVSSS---GRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQE 1981 (2004)
Q Consensus 1905 ~~~~~~s~ItsLafSPd---G~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdl 1981 (2004)
... ..+..+.+... +.+++.++.++.|++||+.+++.. .|.+.|.+++|+|||++|++++.||.|++|++
T Consensus 271 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~ 343 (360)
T d1k32a3 271 PLE---SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343 (360)
T ss_dssp ECS---SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred ecC---CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEEC
Confidence 212 23444444443 346778888999999999887643 34456999999999999999999999999999
Q ss_pred CCCeE
Q psy8748 1982 SNTIV 1986 (2004)
Q Consensus 1982 stg~l 1986 (2004)
++++.
T Consensus 344 ~~~~~ 348 (360)
T d1k32a3 344 EKPED 348 (360)
T ss_dssp SCTTS
T ss_pred CCCCc
Confidence 98864
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.6e-24 Score=256.70 Aligned_cols=267 Identities=16% Similarity=0.225 Sum_probs=200.6
Q ss_pred EeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe--------CCCcEEEee
Q psy8748 1729 VIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI--------DDTTLLTGS 1800 (2004)
Q Consensus 1729 ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs--------dd~~LlSgS 1800 (2004)
..++|.+.|.+++++ ++++++++.||.|++||....+.............+...+..+... +...+++++
T Consensus 9 ~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 9 AGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp ESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 347899999999986 5799999999999999987654333333333333343333222221 112467889
Q ss_pred cCCeEEEEECCCCceeEEe---------eccccCCeEEEEECCC-----CCEEEEEECCCeEEEEECCCCe---------
Q psy8748 1801 GDMKIVTWNLETGQRIHEV---------AQAHIGDVVSISLSPD-----GQYFVTGSVDKSCKLWDFREKK--------- 1857 (2004)
Q Consensus 1801 ~DGtI~IWDl~tg~~i~~i---------l~~h~~~ItsLafSPd-----g~~LaSGS~DGsIrIWDlrs~k--------- 1857 (2004)
.||.|++|++......... ...+...+..++|.++ +.++++++.||.+++||+....
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~ 166 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 166 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence 9999999997654322111 1234556778888765 4688999999999999974211
Q ss_pred ------E---EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC----CCCCCCeEEEEEcCCCCE
Q psy8748 1858 ------C---VQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP----PNKNSGFTSCAVSSSGRY 1924 (2004)
Q Consensus 1858 ------~---I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~----~~~~s~ItsLafSPdG~~ 1924 (2004)
. ......+...+.+++|+|++ +|++|+.||+|++||+.+++.+..+.. ..|...|.+++|+|+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 245 (393)
T d1sq9a_ 167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245 (393)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccce
Confidence 0 11112345668999999998 899999999999999999988776643 346788999999999999
Q ss_pred EEEEeCCC---eEEEEECCCCeeeEEEc-------------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q psy8748 1925 IFCGSDDN---NVHVWDLLKTTHNGVLS-------------GHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWK 1988 (2004)
Q Consensus 1925 LaSGSsDG---sIrIWDL~tge~l~tL~-------------gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k 1988 (2004)
|++|+.|+ .|++||+.+++.+..+. +|.+.|++++|+|++++|+|||.||+|++||+.++++
T Consensus 246 l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~-- 323 (393)
T d1sq9a_ 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER-- 323 (393)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--
T ss_pred eeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE--
Confidence 99999887 49999999998888774 7999999999999999999999999999999999955
Q ss_pred EEEeecCCCCccc
Q psy8748 1989 VLKVYNLEKKTIF 2001 (2004)
Q Consensus 1989 ~Ik~~~~h~~~Vt 2001 (2004)
+.++.+|...|.
T Consensus 324 -~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 324 -ITTLNMHCDDIE 335 (393)
T ss_dssp -EEEEECCGGGCS
T ss_pred -EEEECCcCCccc
Confidence 555567766554
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.88 E-value=8.9e-22 Score=227.24 Aligned_cols=254 Identities=14% Similarity=0.121 Sum_probs=189.0
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee----------cCCe
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG----------MDNM 1757 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS----------~DGt 1757 (2004)
+.+|.+.|.+++|+|||++|++++.++.+++|+..+++....+..|...+.+++|+|+|++|+.++ .++.
T Consensus 81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~ 160 (360)
T d1k32a3 81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160 (360)
T ss_dssp CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred eeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence 345889999999999999999999999999999999999999999999999999999999998653 4567
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCC-CcEEEeecCCeEEEEECCCCceeE------EeeccccCCeEEE
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDD-TTLLTGSGDMKIVTWNLETGQRIH------EVAQAHIGDVVSI 1830 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd-~~LlSgS~DGtI~IWDl~tg~~i~------~il~~h~~~ItsL 1830 (2004)
+++|+..++ .......+...+..+.|+++ ..+++++.++.+.+||........ .....+...+..+
T Consensus 161 ~~v~d~~~~-------~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (360)
T d1k32a3 161 IHVYDMEGR-------KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPT 233 (360)
T ss_dssp EEEEETTTT-------EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGG
T ss_pred eeeeccccC-------ceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccc
Confidence 999999754 23344456667777888855 568889999999999976544321 1122334444555
Q ss_pred EECCCCCEEEEEECCC-----eEEEEECCCCeEEEEEecCCCCeEEEEEeCCC---CEEEEEECCCeEEEEEccCCceeE
Q psy8748 1831 SLSPDGQYFVTGSVDK-----SCKLWDFREKKCVQTFFGHEADVNSVCFHPSG---LAFATGSEDKTARLFDIRADQQIA 1902 (2004)
Q Consensus 1831 afSPdg~~LaSGS~DG-----sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg---~~LaSgS~DGtIrIWDLrtgk~i~ 1902 (2004)
.|++++..++++..+. .+..++...+. ...+..+.+.+..+.+...+ .++++++.++.|++||+.+++...
T Consensus 234 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 312 (360)
T d1k32a3 234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD-YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE 312 (360)
T ss_dssp GCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC-EEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE
T ss_pred eECCCcCcccccceeecccccceeecccCcCc-eeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE
Confidence 6667666655554332 24444444444 33444556666666665544 357788889999999998876543
Q ss_pred EEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCe
Q psy8748 1903 TYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRV 1955 (2004)
Q Consensus 1903 t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~V 1955 (2004)
.. ..+..++|+|||++|++++.||.|++||+.+++...++..+..++
T Consensus 313 ~~------~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 313 VK------NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp EE------EEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred ec------CCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence 22 458999999999999999999999999999998888877666554
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=2.5e-20 Score=226.31 Aligned_cols=291 Identities=11% Similarity=0.069 Sum_probs=202.6
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE--ee---CCCCceEEEEEecCCCEEEE-eecCCeEEEEEcCCCC
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQV--IP---LRSAWVMSVAFAQSGNFVAC-GGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~t--i~---~Ht~~ItsLafSPdg~~LaS-GS~DGtIrVWDl~t~~ 1767 (2004)
.+..++|||||+++++++.||+|++||+.+++.... +. +|...+.+++|+|||+++++ +..++.+++||...+
T Consensus 63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~- 141 (426)
T d1hzua2 63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL- 141 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-
T ss_pred CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc-
Confidence 578999999999999999999999999999875443 32 45556677788899998755 458899999999764
Q ss_pred CCCcceEEEEEecCccceeeeEEe-----------CCC-cE-EEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1768 STGAAKVIRELLGYEGFLSSCRFI-----------DDT-TL-LTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1768 ~~~~~k~i~sl~gh~~~Vssvafs-----------dd~-~L-lSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
........+...+....+. ++. .+ ++....+.+.+++.............+...+..+.|+|
T Consensus 142 -----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (426)
T d1hzua2 142 -----EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS 216 (426)
T ss_dssp -----CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT
T ss_pred -----ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC
Confidence 3333444443333333332 222 22 22233445555555554433333346677889999999
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCeEEEEEecCC--CCeEEEEEeCCCC-EEE--EEECCCeEEEEEccC-------Ccee
Q psy8748 1835 DGQYFVTGS-VDKSCKLWDFREKKCVQTFFGHE--ADVNSVCFHPSGL-AFA--TGSEDKTARLFDIRA-------DQQI 1901 (2004)
Q Consensus 1835 dg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~h~--s~ItsIafSPdg~-~La--SgS~DGtIrIWDLrt-------gk~i 1901 (2004)
++++++++. .++.+.+|+..+++.+....... .......+...+. .+. ..+.|+.+.+|+... ++..
T Consensus 217 ~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~ 296 (426)
T d1hzua2 217 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV 296 (426)
T ss_dssp TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEE
T ss_pred CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEe
Confidence 999888776 45579999999999877765332 2233444444332 222 233578888888654 3555
Q ss_pred EEEcCCCCCCCeEEEEEcCCCCEEEE-------EeCCCeEEEEECCCCeeeEEE---------ccCCCCeEEEEEcCCCC
Q psy8748 1902 ATYLPPNKNSGFTSCAVSSSGRYIFC-------GSDDNNVHVWDLLKTTHNGVL---------SGHENRVTSISLSPNGM 1965 (2004)
Q Consensus 1902 ~t~~~~~~~s~ItsLafSPdG~~LaS-------GSsDGsIrIWDL~tge~l~tL---------~gHs~~VtsLaFSPDg~ 1965 (2004)
..+ ..|...+..++|+|+|+++++ |+.+++|++||+.+++...++ ..|..+|.+++|+|||+
T Consensus 297 ~~l--~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk 374 (426)
T d1hzua2 297 AEL--QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD 374 (426)
T ss_dssp EEE--ECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSS
T ss_pred EEE--ecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCC
Confidence 555 355677899999999999995 456789999999998876554 24667899999999999
Q ss_pred EEEEE-----ECCCeEEEEECCCCeEEEEEEe
Q psy8748 1966 ALVTS-----SWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1966 ~LaSg-----S~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
+++.+ +.||.|+|||..+++.++.++.
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EEEEEEecCCCCCCeEEEEECCCCeEEEEECC
Confidence 77443 3588999999999988777654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.87 E-value=8.2e-19 Score=197.39 Aligned_cols=271 Identities=16% Similarity=0.186 Sum_probs=212.8
Q ss_pred EEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEE-EEeecCCeEEEEEcCCCCCCCcceEEEEEecCccce
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFV-ACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL 1785 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~L-aSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~V 1785 (2004)
.++++.|++|.|||+.+++.+.+++.. ..+..++|+|||+++ ++++.++.|++||+.++ .....+..+. ..
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~------~~~~~~~~~~-~~ 76 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN------NVIATVPAGS-SP 76 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT------EEEEEEECSS-SE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC------ceeeeeeccc-cc
Confidence 346678999999999999999998865 447899999999987 56678899999999764 4455555544 34
Q ss_pred eeeEEeCCCc--EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE-ECCCeEEEEECCCCeEEEEE
Q psy8748 1786 SSCRFIDDTT--LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG-SVDKSCKLWDFREKKCVQTF 1862 (2004)
Q Consensus 1786 ssvafsdd~~--LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG-S~DGsIrIWDlrs~k~I~tl 1862 (2004)
..+.+..++. ++++..++.+.+|+..+++....+ .+.....+++|+|+++.++.+ ..++.+.+|+..+...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (301)
T d1l0qa2 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccccccccccccccccceeeecccccceeeeec--cccccceEEEeecCCCeeeeeeccccceeeeeccccceeeec
Confidence 6677775543 455667889999999998877554 345678899999999987655 45788999999999988877
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEECC-CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEE
Q psy8748 1863 FGHEADVNSVCFHPSGLAFATGSED-KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD---DNNVHVWD 1938 (2004)
Q Consensus 1863 ~~h~s~ItsIafSPdg~~LaSgS~D-GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs---DGsIrIWD 1938 (2004)
.. ...+.++.++|++..+++++.+ +.+.+|+............ ......++++++|+.+++++. ++.|++||
T Consensus 155 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D 230 (301)
T d1l0qa2 155 SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (301)
T ss_dssp EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred cc-CCCceEEEeeccccceeeecccccccccccccceeeeecccc---cCCcceeeccccccccccccccceeeeeeeee
Confidence 54 4567899999999988887765 5677888777666655532 245778999999998876643 46899999
Q ss_pred CCCCeeeEEEccCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1939 LLKTTHNGVLSGHENRVTSISLSPNGMAL-VTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1939 L~tge~l~tL~gHs~~VtsLaFSPDg~~L-aSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
+.+++....+.. ...+.+++|+|||++| ++++.|+.|++||+++++..+.+++
T Consensus 231 ~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 231 TGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp TTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred cCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 999999888764 4568999999999987 5777899999999999987777654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=1.6e-20 Score=230.23 Aligned_cols=289 Identities=14% Similarity=0.072 Sum_probs=193.5
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCce--EEEee---CCCCceEEEEEecCCCEE-EEeecCCeEEEEEcCCCC
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNK--TQVIP---LRSAWVMSVAFAQSGNFV-ACGGMDNMCTVYDLNNRD 1767 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~--l~ti~---~Ht~~ItsLafSPdg~~L-aSGS~DGtIrVWDl~t~~ 1767 (2004)
.+..++|||||+++++++.||.|++||+.+++. ...++ .|.+.+.+..|+|||+++ ++++.++.|++||..+++
T Consensus 63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~ 142 (432)
T d1qksa2 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 142 (432)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc
Confidence 588999999999999999999999999988764 33333 344556666778899976 678889999999998753
Q ss_pred CCCcceEEEEEec-----------CccceeeeEEeCCC-c-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECC
Q psy8748 1768 STGAAKVIRELLG-----------YEGFLSSCRFIDDT-T-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP 1834 (2004)
Q Consensus 1768 ~~~~~k~i~sl~g-----------h~~~Vssvafsdd~-~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP 1834 (2004)
....... +......+.+++++ . +++...++.|.+||..+++........+...+.+++|+|
T Consensus 143 ------~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp 216 (432)
T d1qksa2 143 ------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216 (432)
T ss_dssp ------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred ------ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECC
Confidence 2222222 23344455666444 3 456677899999999887755433335566789999999
Q ss_pred CCCEEEEEEC-CCeEEEEECCCCeEEEEEec-----CCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCc-------e
Q psy8748 1835 DGQYFVTGSV-DKSCKLWDFREKKCVQTFFG-----HEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQ-------Q 1900 (2004)
Q Consensus 1835 dg~~LaSGS~-DGsIrIWDlrs~k~I~tl~~-----h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk-------~ 1900 (2004)
+|+++++++. ++.+.++|..+++.+..+.. |........+...+....+.. .++.|.+|+..... .
T Consensus 217 dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v 296 (432)
T d1qksa2 217 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKI 296 (432)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred CCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEE
Confidence 9998887775 45799999998887766532 223333444444444444332 26678888754322 1
Q ss_pred eEEEcCCC-----------------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEE
Q psy8748 1901 IATYLPPN-----------------------KNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTS 1957 (2004)
Q Consensus 1901 i~t~~~~~-----------------------~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~Vts 1957 (2004)
......+. +......+++ ||++.+++++.|+.+++|++.++.. +..|..+|.+
T Consensus 297 ~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~ 372 (432)
T d1qksa2 297 LDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQ 372 (432)
T ss_dssp EEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT---CCSSCCEEEE
T ss_pred EEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEecccccccc---cCCCCCcEEE
Confidence 11111000 0000112332 6666677777777777777644322 2357778999
Q ss_pred EEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEEEe
Q psy8748 1958 ISLSPNGMALVTSS-----WDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1958 LaFSPDg~~LaSgS-----~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
++|+|||++++.+. .||.|.|||..+.+.|+.++.
T Consensus 373 ~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~ 412 (432)
T d1qksa2 373 GEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 412 (432)
T ss_dssp EEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred eEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecC
Confidence 99999999886654 468999999999998887764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=2.4e-19 Score=205.10 Aligned_cols=279 Identities=14% Similarity=0.037 Sum_probs=195.7
Q ss_pred ccceeEEEEeCCCCEEE-EEeCCCeEEEEECCCCceEEEeeCCC------CceEEEEEecCCCEEEEee-----------
Q psy8748 1692 INKVNSVHYSGDSRHCV-SGSLDGKLIIWDTWTGNKTQVIPLRS------AWVMSVAFAQSGNFVACGG----------- 1753 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LA-SGS~DGtIrVWDl~Tgk~l~ti~~Ht------~~ItsLafSPdg~~LaSGS----------- 1753 (2004)
...+.+++|+|||++++ +++.++.|++||+.+++.+..+.... ..+..++|+|||+++++++
T Consensus 39 ~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~ 118 (346)
T d1jmxb_ 39 KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118 (346)
T ss_dssp CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeec
Confidence 34567999999999874 55678999999999999988776432 2356889999999988775
Q ss_pred -cCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEE
Q psy8748 1754 -MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISL 1832 (2004)
Q Consensus 1754 -~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLaf 1832 (2004)
.++.+.+|+..++....... . ......+..+.+.+++.+++.+ +.+.+||..+++...... .......+.+
T Consensus 119 ~~~~~i~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 190 (346)
T d1jmxb_ 119 VKPPRLEVFSTADGLEAKPVR---T-FPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALP--LRNWNRKGYS 190 (346)
T ss_dssp ECCCEEEEEEGGGGGGBCCSE---E-EECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEEC--STTCCCTTBC
T ss_pred cCcceEEEEecccceeeeEEE---e-eeccCceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEEe--cCCCccceEE
Confidence 36778888887654222211 1 1122344455666677666654 568899999988775542 2334556677
Q ss_pred CCCCCEEEEEE-CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCC
Q psy8748 1833 SPDGQYFVTGS-VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNS 1911 (2004)
Q Consensus 1833 SPdg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s 1911 (2004)
+|++..++... .++.+.+++.. ..+.+....+.++..++.+.+||..++........ .+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 252 (346)
T d1jmxb_ 191 APDVLYFWPHQSPRHEFSMLYTI-----------------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-DLTE 252 (346)
T ss_dssp CCBCCCCCCCCCTTCEEEEEEEE-----------------EEC-------CCCEEEEEEEEEETTTCCEEEEEEE-ECSS
T ss_pred eccccEEEEEecCCCceEeeeee-----------------eeeccCceeEeeccCCceEEEEECCCCceEEEEee-cccc
Confidence 88777655443 34445544321 11223344455666677899999998876655432 3345
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1912 GFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1912 ~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
.+..+.+++++.+++.+. ++.|++||..+++.+..+. +...+.+++|+|||++|++++.||.|++||..+++..+.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 253 LYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp CEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred eeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence 688889999888887765 4679999999999988876 45679999999999999999999999999999998887777
Q ss_pred eecCCCC
Q psy8748 1992 VYNLEKK 1998 (2004)
Q Consensus 1992 ~~~~h~~ 1998 (2004)
...++..
T Consensus 331 ~p~g~~~ 337 (346)
T d1jmxb_ 331 LPGGDMS 337 (346)
T ss_dssp CSSSCCB
T ss_pred CCCCCcc
Confidence 6655433
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.83 E-value=1.8e-17 Score=186.20 Aligned_cols=242 Identities=20% Similarity=0.172 Sum_probs=189.0
Q ss_pred ceeEEEEeCCCCEEE-EEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEE-EeecCCeEEEEEcCCCCCCCc
Q psy8748 1694 KVNSVHYSGDSRHCV-SGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVA-CGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LA-SGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~La-SGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
.+..++|+|||++|+ +++.++.|++||+.+++.+..+..+.. +..+.|++++..++ ++..++.+.+|+..++
T Consensus 33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 106 (301)
T d1l0qa2 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSN----- 106 (301)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTT-----
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccc-----
Confidence 456899999999875 666789999999999999999887765 68999999998655 5566789999998754
Q ss_pred ceEEEEEecCccceeeeEEeCCCc--EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC-CeE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTT--LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD-KSC 1848 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~--LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D-GsI 1848 (2004)
.....+.. .....++.+.+++. ++++..++.+.+|+..++...... .+...+..++++++++.+++++.+ +.+
T Consensus 107 -~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (301)
T d1l0qa2 107 -TVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV--SVGRSPKGIAVTPDGTKVYVANFDSMSI 182 (301)
T ss_dssp -EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECCSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred -eeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeec--ccCCCceEEEeeccccceeeeccccccc
Confidence 33344433 34556677775543 445667889999999998877555 344568899999999988888765 567
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEE
Q psy8748 1849 KLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE---DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1849 rIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~---DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~L 1925 (2004)
.+|+........... ....+..++|+++++.+++++. ++.|++||..+++....+.. ...+..++|+|||+++
T Consensus 183 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~---~~~~~~va~spdg~~l 258 (301)
T d1l0qa2 183 SVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKV 258 (301)
T ss_dssp EEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEE
T ss_pred ccccccceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC---CCCEEEEEEeCCCCEE
Confidence 788887777666654 4456788999999998876654 46799999999998877743 2458999999999987
Q ss_pred -EEEeCCCeEEEEECCCCeeeEEEc
Q psy8748 1926 -FCGSDDNNVHVWDLLKTTHNGVLS 1949 (2004)
Q Consensus 1926 -aSGSsDGsIrIWDL~tge~l~tL~ 1949 (2004)
++++.+|.|++||+.+++.+.++.
T Consensus 259 ~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 259 YVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCeEEEEECCCCeEEEEEe
Confidence 466779999999999999988875
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.83 E-value=3e-19 Score=216.70 Aligned_cols=310 Identities=12% Similarity=0.033 Sum_probs=212.3
Q ss_pred CCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCcchh
Q psy8748 1556 EQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSSINI 1635 (2004)
Q Consensus 1556 ~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgSidi 1635 (2004)
..++.++|||||++|++ ++.||++++||+.+ ++......
T Consensus 62 ~~~~~vafSPDGk~l~~-~~~d~~v~vwd~~t-------------~~~~~~~~--------------------------- 100 (426)
T d1hzua2 62 YAVHISRMSASGRYLLV-IGRDARIDMIDLWA-------------KEPTKVAE--------------------------- 100 (426)
T ss_dssp SSEEEEEECTTSCEEEE-EETTSEEEEEETTS-------------SSCEEEEE---------------------------
T ss_pred CCeeEEEECCCCCEEEE-EeCCCCEEEEEccC-------------CceeEEEE---------------------------
Confidence 36999999999999999 88999999999988 22111111
Q ss_pred hhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEE-EeCCC
Q psy8748 1636 YLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVS-GSLDG 1714 (2004)
Q Consensus 1636 ~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LAS-GS~DG 1714 (2004)
+....+|.+.+.+++|+|||+++++ +..++
T Consensus 101 -------------------------------------------------i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~ 131 (426)
T d1hzua2 101 -------------------------------------------------IKIGIEARSVESSKFKGYEDRYTIAGAYWPP 131 (426)
T ss_dssp -------------------------------------------------EECCSEEEEEEECCSTTCTTTEEEEEEEESS
T ss_pred -------------------------------------------------EeCCCCCcceEEeeeecCCCCEEEEeecCCC
Confidence 1123357778888899999998754 55789
Q ss_pred eEEEEECCCCceEEEeeCCCCceEE-----------EEEecCCCEEEEeec-CCeEEEEEcCCCCCCCcceEEEEEecCc
Q psy8748 1715 KLIIWDTWTGNKTQVIPLRSAWVMS-----------VAFAQSGNFVACGGM-DNMCTVYDLNNRDSTGAAKVIRELLGYE 1782 (2004)
Q Consensus 1715 tIrVWDl~Tgk~l~ti~~Ht~~Its-----------LafSPdg~~LaSGS~-DGtIrVWDl~t~~~~~~~k~i~sl~gh~ 1782 (2004)
.+++||..++........|...+.. +.+++++..++.... .+.+.+++..... .......++.
T Consensus 132 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~ 206 (426)
T d1hzua2 132 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID-----NLTVTSIGAA 206 (426)
T ss_dssp EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS-----SCEEEEEECC
T ss_pred eEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccc-----ceeeEEeccC
Confidence 9999999999998888766554444 444444444433322 2444444443321 1122334566
Q ss_pred cceeeeEEeCCCc-EE-EeecCCeEEEEECCCCceeEEeecc-ccCCeEEEEECCCCC-EE--EEEECCCeEEEEECCC-
Q psy8748 1783 GFLSSCRFIDDTT-LL-TGSGDMKIVTWNLETGQRIHEVAQA-HIGDVVSISLSPDGQ-YF--VTGSVDKSCKLWDFRE- 1855 (2004)
Q Consensus 1783 ~~Vssvafsdd~~-Ll-SgS~DGtI~IWDl~tg~~i~~il~~-h~~~ItsLafSPdg~-~L--aSGS~DGsIrIWDlrs- 1855 (2004)
..+..+.+.+++. ++ +...+..+.+++..+++.......+ +........+...+. .. +..+.|+.+..|+...
T Consensus 207 ~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~ 286 (426)
T d1hzua2 207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 286 (426)
T ss_dssp SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence 7777888886554 44 4456778999999998877554322 112222233332222 22 2233577888887653
Q ss_pred ------CeEEEEEecCCCCeEEEEEeCCCCEEEE-------EECCCeEEEEEccCCceeEEEc-------CCCCCCCeEE
Q psy8748 1856 ------KKCVQTFFGHEADVNSVCFHPSGLAFAT-------GSEDKTARLFDIRADQQIATYL-------PPNKNSGFTS 1915 (2004)
Q Consensus 1856 ------~k~I~tl~~h~s~ItsIafSPdg~~LaS-------gS~DGtIrIWDLrtgk~i~t~~-------~~~~~s~Its 1915 (2004)
++....+.+|...+..++|+|+++++++ ++.|++|++||+.+++...++. ...+...+..
T Consensus 287 ~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~ 366 (426)
T d1hzua2 287 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ 366 (426)
T ss_dssp TCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEE
T ss_pred ccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEE
Confidence 4678889999999999999999999995 4457899999999988776652 2344566889
Q ss_pred EEEcCCCCEEEEE-----eCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCE
Q psy8748 1916 CAVSSSGRYIFCG-----SDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMA 1966 (2004)
Q Consensus 1916 LafSPdG~~LaSG-----SsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~ 1966 (2004)
++|+|||+++++. +.+|.|+|||.++++....+.++. .++|+|++
T Consensus 367 ~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~ 416 (426)
T d1hzua2 367 PEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKF 416 (426)
T ss_dssp EEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEE
T ss_pred EEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceE
Confidence 9999999987543 357899999999999999888764 33566655
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=2.5e-18 Score=195.79 Aligned_cols=279 Identities=13% Similarity=0.050 Sum_probs=206.9
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCC--CCceEEEEEecCCCEE-EEeecCCeEEEEEcCCCCCCCcceEEEEEecC
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLR--SAWVMSVAFAQSGNFV-ACGGMDNMCTVYDLNNRDSTGAAKVIRELLGY 1781 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~H--t~~ItsLafSPdg~~L-aSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh 1781 (2004)
+|+++++.|++|+|||+.+++.+..+..+ ...+.+++|+|||+++ ++++.++.|.+||+.+++ .......+
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~------~~~~~~~~ 75 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE------TLGRIDLS 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC------EEEEEECC
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc------EEEEEecC
Confidence 58999999999999999999999988754 4567899999999987 566789999999998753 33333222
Q ss_pred -----ccceeeeEEeCCCc-EEEee------------cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE
Q psy8748 1782 -----EGFLSSCRFIDDTT-LLTGS------------GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1782 -----~~~Vssvafsdd~~-LlSgS------------~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
...+..+.+++++. ++++. .++.+.+||..++.....+ .+...+.+++|+|+|+++++++
T Consensus 76 ~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF--EAPRQITMLAWARDGSKLYGLG 153 (337)
T ss_dssp BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE--ECCSSCCCEEECTTSSCEEEES
T ss_pred CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEec--cccCCceEEEEcCCCCEEEEEc
Confidence 22344667775543 44443 4678999999998877555 3456688999999999999886
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCC------------------------EEEEEECCCeEEEEEccCCc
Q psy8748 1844 VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL------------------------AFATGSEDKTARLFDIRADQ 1899 (2004)
Q Consensus 1844 ~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~------------------------~LaSgS~DGtIrIWDLrtgk 1899 (2004)
. .+.+||..+++....+..+... ....+.+++. ....++.++.+.+||..++.
T Consensus 154 ~--~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (337)
T d1pbyb_ 154 R--DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp S--SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred C--CcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc
Confidence 4 5788999999888777543221 1111122111 11112234569999998887
Q ss_pred eeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy8748 1900 QIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVW 1979 (2004)
Q Consensus 1900 ~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIW 1979 (2004)
...... ..+...+..+.+++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.||.|++|
T Consensus 231 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~ 306 (337)
T d1pbyb_ 231 MAMREV-RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAY 306 (337)
T ss_dssp EEEEEE-EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred EEEEEe-cCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 655432 2344678889999999998876 5889999999999998885 56778999999999999999999999999
Q ss_pred ECCCCeEEEEEEeecCCCC
Q psy8748 1980 QESNTIVWKVLKVYNLEKK 1998 (2004)
Q Consensus 1980 dlstg~l~k~Ik~~~~h~~ 1998 (2004)
|..+++..+.++.......
T Consensus 307 D~~t~~~v~~i~~~g~~~~ 325 (337)
T d1pbyb_ 307 DAETLEKKGQVDLPGNASM 325 (337)
T ss_dssp ETTTCCEEEEEECGGGCCC
T ss_pred ECCCCcEEEEEECCCCCcc
Confidence 9999988777776544333
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=1.4e-17 Score=189.62 Aligned_cols=242 Identities=13% Similarity=0.091 Sum_probs=176.0
Q ss_pred cceeEEEEeCCCCEE-EEEeCCCeEEEEECCCCceEEEeeCCCC-----ceEEEEEecCCCEEEEeec------------
Q psy8748 1693 NKVNSVHYSGDSRHC-VSGSLDGKLIIWDTWTGNKTQVIPLRSA-----WVMSVAFAQSGNFVACGGM------------ 1754 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~L-ASGS~DGtIrVWDl~Tgk~l~ti~~Ht~-----~ItsLafSPdg~~LaSGS~------------ 1754 (2004)
..+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+.. .+..++|+|+++++++++.
T Consensus 34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T d1pbyb_ 34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccc
Confidence 456789999999987 4667899999999999999988876543 3557899999999988764
Q ss_pred CCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEEC
Q psy8748 1755 DNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLS 1833 (2004)
Q Consensus 1755 DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafS 1833 (2004)
++.+.+||..++ .....+. ....+..+.+++++. +++++ +.+.+||..+++.......... .....+.
T Consensus 114 ~~~~~~~d~~~~------~~~~~~~-~~~~~~~~~~s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~ 182 (337)
T d1pbyb_ 114 PTRVALYDAETL------SRRKAFE-APRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSW--EAETYAQ 182 (337)
T ss_dssp CCEEEEEETTTT------EEEEEEE-CCSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECSTTT--TTTTBCC
T ss_pred ccceeeccccCC------eEEEecc-ccCCceEEEEcCCCCEEEEEc--CCcceeeeecCcEEEEeecCCc--cccceec
Confidence 467788888654 3333333 345577788886654 65654 4577899998877654421110 0111111
Q ss_pred CCC------------------------CEEEEEECCCeEEEEECCCCeEEE-EEecCCCCeEEEEEeCCCCEEEEEECCC
Q psy8748 1834 PDG------------------------QYFVTGSVDKSCKLWDFREKKCVQ-TFFGHEADVNSVCFHPSGLAFATGSEDK 1888 (2004)
Q Consensus 1834 Pdg------------------------~~LaSGS~DGsIrIWDlrs~k~I~-tl~~h~s~ItsIafSPdg~~LaSgS~DG 1888 (2004)
+++ .....+..++.+.+||..++.... .+..+...+.++.+++++.+++.+ ++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 260 (337)
T d1pbyb_ 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YN 260 (337)
T ss_dssp CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ES
T ss_pred CCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cc
Confidence 111 111112234569999998887544 345677788899999999988766 58
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG 1950 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g 1950 (2004)
.|++||+.+++.+..... ...+.+++|+|||+++++|+.+|.|++||..+++.+..+..
T Consensus 261 ~i~v~d~~~~~~~~~~~~---~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 261 VLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred cEEEEECCCCcEEEEEcC---CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 999999999999888743 34578999999999999999999999999999999988764
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.73 E-value=3.5e-15 Score=174.35 Aligned_cols=288 Identities=12% Similarity=-0.035 Sum_probs=201.0
Q ss_pred cccccceeEEEEeCCCCEEEEE-----eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee----------
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSG-----SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG---------- 1753 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASG-----S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS---------- 1753 (2004)
..|.+++.+++++|||+.++.. +.++.|.+||..+++.+..+..+..+ .++|+|||+++++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 4588899999999999988764 23467999999999999988876554 789999999998875
Q ss_pred cCCeEEEEEcCCCCCCCcceEEEEEecCccce-------eeeEEeCC-CcEEE--eecCCeEEEEECCCCceeEEeeccc
Q psy8748 1754 MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFL-------SSCRFIDD-TTLLT--GSGDMKIVTWNLETGQRIHEVAQAH 1823 (2004)
Q Consensus 1754 ~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~V-------ssvafsdd-~~LlS--gS~DGtI~IWDl~tg~~i~~il~~h 1823 (2004)
.++.|.+||..+++ .......+.... ..+.+..+ ..+++ ...++.+.+|+....+.. .+
T Consensus 95 ~~~~v~v~D~~t~~------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~-----~~ 163 (373)
T d2madh_ 95 RTDYVEVFDPVTFL------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD-----QL 163 (373)
T ss_pred cceEEEEEECCCCc------EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE-----EE
Confidence 45789999998753 233333332222 23444433 33333 344567888888776654 23
Q ss_pred cCCeEEEEECCCCCEE-EEEECCCeEEEEECCCCeEEEEEecCC------CCeEEEEEeCCCCEEEEEECCCeEEEEEcc
Q psy8748 1824 IGDVVSISLSPDGQYF-VTGSVDKSCKLWDFREKKCVQTFFGHE------ADVNSVCFHPSGLAFATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~L-aSGS~DGsIrIWDlrs~k~I~tl~~h~------s~ItsIafSPdg~~LaSgS~DGtIrIWDLr 1896 (2004)
.....++.++|+++.+ ++.+.||.+.+||...+........+. .......+.+++. ++..+.++.+.+|+..
T Consensus 164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~ 242 (373)
T d2madh_ 164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADIS 242 (373)
T ss_pred eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcC
Confidence 3456788999988754 678899999999999887766554322 2233455566654 4455678999999988
Q ss_pred CCceeEEEcCCCC----------CCCeEEEEEcCCCCEE----------EEEeCCCeEEEEECCCCeeeEEEccCCCCeE
Q psy8748 1897 ADQQIATYLPPNK----------NSGFTSCAVSSSGRYI----------FCGSDDNNVHVWDLLKTTHNGVLSGHENRVT 1956 (2004)
Q Consensus 1897 tgk~i~t~~~~~~----------~s~ItsLafSPdG~~L----------aSGSsDGsIrIWDL~tge~l~tL~gHs~~Vt 1956 (2004)
++........... ......+++++++..+ +....++.+.+||..+++.+..+. +...+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~ 321 (373)
T d2madh_ 243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVD 321 (373)
T ss_pred CCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCee
Confidence 7654322211111 1123345666666554 445567789999999999988775 667899
Q ss_pred EEEEcCCCCE--EEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1957 SISLSPNGMA--LVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1957 sLaFSPDg~~--LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
+++|+|||+. +++++.|+.|++||+.+++..+.+.
T Consensus 322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~ 358 (373)
T d2madh_ 322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred EEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence 9999999984 4678899999999999997665554
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.71 E-value=1.2e-14 Score=169.75 Aligned_cols=253 Identities=9% Similarity=-0.065 Sum_probs=176.5
Q ss_pred EEEEeCCCCEEEEEe----------CCCeEEEEECCCCceEEEeeCCCCce-------EEEEEecCCCEEEEee--cCCe
Q psy8748 1697 SVHYSGDSRHCVSGS----------LDGKLIIWDTWTGNKTQVIPLRSAWV-------MSVAFAQSGNFVACGG--MDNM 1757 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS----------~DGtIrVWDl~Tgk~l~ti~~Ht~~I-------tsLafSPdg~~LaSGS--~DGt 1757 (2004)
.++|+|||+++++++ .++.|.+||..+++....+..+.... ..+.|+++++.++... .++.
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 149 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence 589999999998875 35789999999999998887665443 4567888888665554 3467
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC--cEEEeecCCeEEEEECCCCceeEEeec-----cccCCeEEE
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT--TLLTGSGDMKIVTWNLETGQRIHEVAQ-----AHIGDVVSI 1830 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~--~LlSgS~DGtI~IWDl~tg~~i~~il~-----~h~~~ItsL 1830 (2004)
+.+|+..... .. .+.....++.+.+++ .+++.+.||.+.+||...+........ .........
T Consensus 150 ~~~~~~~~~~------~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (373)
T d2madh_ 150 VGLVVQGGSS------DD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPA 219 (373)
T ss_pred eEEeeccCCe------EE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeE
Confidence 8888876432 11 122234455565433 467888999999999988776544321 112223445
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeEEEE--EecC----------CCCeEEEEEeCCCCEE----------EEEECCC
Q psy8748 1831 SLSPDGQYFVTGSVDKSCKLWDFREKKCVQT--FFGH----------EADVNSVCFHPSGLAF----------ATGSEDK 1888 (2004)
Q Consensus 1831 afSPdg~~LaSGS~DGsIrIWDlrs~k~I~t--l~~h----------~s~ItsIafSPdg~~L----------aSgS~DG 1888 (2004)
.+.+++. ++..+.++.+.+|+......... ...+ ......+++++++..+ +....++
T Consensus 220 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 298 (373)
T d2madh_ 220 QANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK 298 (373)
T ss_pred EECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCC
Confidence 5666554 44556788999999887653221 1111 1223445666665544 4455677
Q ss_pred eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCE--EEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCC
Q psy8748 1889 TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRY--IFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPN 1963 (2004)
Q Consensus 1889 tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~--LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPD 1963 (2004)
.+.+||..+++.+..+. +...+..++|+|||+. +++++.|+.|++||+.+++.+..+..+....+.+++.++
T Consensus 299 ~v~~~d~~t~~~~~~~~---~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 299 EVTSVTGLVGQTSSQIS---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred eEEEEECCCCcEEEEec---CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 89999999999888773 3356889999999984 467889999999999999999999988888888887543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=2.2e-14 Score=163.56 Aligned_cols=285 Identities=11% Similarity=0.148 Sum_probs=193.0
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEe--eCCCCceEEEEEecCCCEEEEee-cCCeEEEEEcCCCCCCCcceEEEEEecCc
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQVI--PLRSAWVMSVAFAQSGNFVACGG-MDNMCTVYDLNNRDSTGAAKVIRELLGYE 1782 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~ti--~~Ht~~ItsLafSPdg~~LaSGS-~DGtIrVWDl~t~~~~~~~k~i~sl~gh~ 1782 (2004)
.+++++.|++|++|++.+...+..+ ..|.+.+.+++|+|||++|++++ .|+.|++|++..... ...........
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~---~~~~~~~~~~~ 82 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG---ALTFAAESALP 82 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC---CEEEEEEEECS
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC---cEEEeeecccC
Confidence 3567789999999998765433332 35778899999999999886554 589999999976431 11222223344
Q ss_pred cceeeeEEeCCC-cEEEee-cCCeEEEEECCCCceeEEe-eccccCCeEEEEECCCCCEEEEEEC-CCeEEEEECCCCeE
Q psy8748 1783 GFLSSCRFIDDT-TLLTGS-GDMKIVTWNLETGQRIHEV-AQAHIGDVVSISLSPDGQYFVTGSV-DKSCKLWDFREKKC 1858 (2004)
Q Consensus 1783 ~~Vssvafsdd~-~LlSgS-~DGtI~IWDl~tg~~i~~i-l~~h~~~ItsLafSPdg~~LaSGS~-DGsIrIWDlrs~k~ 1858 (2004)
..+..+++++++ ++++++ .++.|.+|+.......... ...+...+.++.++|+++++++++. +..|.+|+......
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 162 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence 556678888665 466665 4778999988776544333 3355667889999999998888874 45699999876432
Q ss_pred EEE------EecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCcee----EEEc----CCCCCCCeEEEEEcCCCC
Q psy8748 1859 VQT------FFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQI----ATYL----PPNKNSGFTSCAVSSSGR 1923 (2004)
Q Consensus 1859 I~t------l~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i----~t~~----~~~~~s~ItsLafSPdG~ 1923 (2004)
... ..........++|++++.+++... ..+...+|+....... .... ..........++++++++
T Consensus 163 ~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 242 (333)
T d1ri6a_ 163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 242 (333)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccC
Confidence 221 123445678999999998877655 4567888886543221 1111 112234567789999999
Q ss_pred EEEEE-eCCCeEEEEECCCCeeeEEE---ccCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEEC--CCCeEEEEEEeec
Q psy8748 1924 YIFCG-SDDNNVHVWDLLKTTHNGVL---SGHENRVTSISLSPNGMALVTSSW-DQFVKVWQE--SNTIVWKVLKVYN 1994 (2004)
Q Consensus 1924 ~LaSG-SsDGsIrIWDL~tge~l~tL---~gHs~~VtsLaFSPDg~~LaSgS~-DGtIrIWdl--stg~l~k~Ik~~~ 1994 (2004)
++++. ..++.+.+|++......... ..+...+.+++|+|||++|++++. ++.|++|++ ++|++ +.+....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l-~~~~~~~ 319 (333)
T d1ri6a_ 243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL-HEKGRYA 319 (333)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE-EEEEEEE
T ss_pred ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE-EEEEecc
Confidence 77665 45689999998765433332 234566889999999999877764 689999965 56643 5455444
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.67 E-value=6.4e-15 Score=179.99 Aligned_cols=235 Identities=14% Similarity=0.008 Sum_probs=169.9
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccc
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGF 1784 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~ 1784 (2004)
-++++.+.||+|.|||..+++.+..+..+. .+..++|+|||+++++++.||.|++||+.+++... ...+....++.+.
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~-~~~i~~~~~~~~~ 110 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-VAEIKIGSEARSI 110 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-EEEEECCSEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE-EEEEecCCCCCCe
Confidence 346888999999999999999999998774 59999999999999999999999999998753211 1122223345555
Q ss_pred eeeeEEeCCC-cE-EEeecCCeEEEEECCCCceeEEee----------ccccCCeEEEEECCCCCEEE-EEECCCeEEEE
Q psy8748 1785 LSSCRFIDDT-TL-LTGSGDMKIVTWNLETGQRIHEVA----------QAHIGDVVSISLSPDGQYFV-TGSVDKSCKLW 1851 (2004)
Q Consensus 1785 Vssvafsdd~-~L-lSgS~DGtI~IWDl~tg~~i~~il----------~~h~~~ItsLafSPdg~~La-SGS~DGsIrIW 1851 (2004)
+.+..|++++ ++ +++..++.|.+||..+++.+.... ..+.+....+.++++|..++ +...++.|.+|
T Consensus 111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~ 190 (432)
T d1qksa2 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 190 (432)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence 5666666554 44 667889999999999998775442 12445677889999998765 45567899999
Q ss_pred ECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEEccCCceeEEEcCCC---CCCCeEEEEEcCCCCEEE
Q psy8748 1852 DFREKKCVQTFF-GHEADVNSVCFHPSGLAFATGSE-DKTARLFDIRADQQIATYLPPN---KNSGFTSCAVSSSGRYIF 1926 (2004)
Q Consensus 1852 Dlrs~k~I~tl~-~h~s~ItsIafSPdg~~LaSgS~-DGtIrIWDLrtgk~i~t~~~~~---~~s~ItsLafSPdG~~La 1926 (2004)
|..+.+...... .+...+.+++|+|+|+++++++. ++.+.++|..+++....+.... +........+...+...+
T Consensus 191 d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~ 270 (432)
T d1qksa2 191 DYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 270 (432)
T ss_dssp ETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEE
T ss_pred EccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceec
Confidence 998876544332 45667889999999998877765 5579999999888776663321 223344445554555554
Q ss_pred EEe-CCCeEEEEECCC
Q psy8748 1927 CGS-DDNNVHVWDLLK 1941 (2004)
Q Consensus 1927 SGS-sDGsIrIWDL~t 1941 (2004)
+.. .++.|.+|+...
T Consensus 271 ~~~lg~~~v~~~~~~~ 286 (432)
T d1qksa2 271 TSHMGDDSVALIGTDP 286 (432)
T ss_dssp EEBSSSSEEEEEECCT
T ss_pred ccccCCceEEeccccc
Confidence 443 377888887644
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.66 E-value=7.2e-15 Score=169.83 Aligned_cols=256 Identities=11% Similarity=0.028 Sum_probs=173.6
Q ss_pred EEEEeCCCCEEEEE----------eCCCeEEEEECCCCceEEEeeCCCC-------ceEEEEEecCCCEEEEee--cCCe
Q psy8748 1697 SVHYSGDSRHCVSG----------SLDGKLIIWDTWTGNKTQVIPLRSA-------WVMSVAFAQSGNFVACGG--MDNM 1757 (2004)
Q Consensus 1697 sLaFSPDG~~LASG----------S~DGtIrVWDl~Tgk~l~ti~~Ht~-------~ItsLafSPdg~~LaSGS--~DGt 1757 (2004)
.++|||||++|++. +.||.|++||..+++....+..+.. ....++|++++++++++. .++.
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 130 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 130 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence 68999999988754 3478999999999999888754332 235679999999887764 4578
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEe-----eccccCCeEEEEE
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV-----AQAHIGDVVSISL 1832 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~i-----l~~h~~~ItsLaf 1832 (2004)
+.+|+..++ +....+....... .........++.+.||....+........... ...+...+....+
T Consensus 131 ~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (355)
T d2bbkh_ 131 VGVVDLEGK------AFKRMLDVPDCYH--IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY 202 (355)
T ss_dssp EEEEETTTT------EEEEEEECCSEEE--EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE
T ss_pred eeeeecCCC------cEeeEEecCCcce--EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccc
Confidence 999998764 3333333222111 11122333445555655555544433322111 1123334555677
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeEEE--EEecC----------CCCeEEEEEeCCCCEEEEEECC----------CeE
Q psy8748 1833 SPDGQYFVTGSVDKSCKLWDFREKKCVQ--TFFGH----------EADVNSVCFHPSGLAFATGSED----------KTA 1890 (2004)
Q Consensus 1833 SPdg~~LaSGS~DGsIrIWDlrs~k~I~--tl~~h----------~s~ItsIafSPdg~~LaSgS~D----------GtI 1890 (2004)
.+++..++.++.+|.+++|++..+.... ....+ ......+++++++..++....+ +.|
T Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v 282 (355)
T d2bbkh_ 203 SQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 282 (355)
T ss_dssp ETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred cCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeE
Confidence 8888899999999999999998775321 11111 1223458899999988776544 369
Q ss_pred EEEEccCCceeEEEcCCCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCC
Q psy8748 1891 RLFDIRADQQIATYLPPNKNSGFTSCAVSSSGR--YIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPN 1963 (2004)
Q Consensus 1891 rIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~--~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPD 1963 (2004)
.+||..+++.+..+.. ...+.+++|+|||+ ++++++.|+.|++||+++++.+..+.++......+.+.++
T Consensus 283 ~v~d~~t~~~~~~~~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 283 VVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred EEEeCCCCcEEEEecC---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence 9999999998877742 24578999999998 4566777999999999999999999877666666665544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.63 E-value=7.4e-15 Score=169.69 Aligned_cols=282 Identities=12% Similarity=0.013 Sum_probs=187.7
Q ss_pred eEEEEeCCCCEEEEEe-----CCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEe----------ecCCeEEE
Q psy8748 1696 NSVHYSGDSRHCVSGS-----LDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACG----------GMDNMCTV 1760 (2004)
Q Consensus 1696 tsLaFSPDG~~LASGS-----~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSG----------S~DGtIrV 1760 (2004)
.-.+.+|||+.+++.. .++.|.+||..+++.+.++..+..+ .++|+|||++++++ +.+|.|++
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v 82 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV 82 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence 3345679999887653 3567999999999999988866544 79999999988764 34789999
Q ss_pred EEcCCCCCCCcceEEEEEecC-------ccceeeeEEeCCCc-EEEe--ecCCeEEEEECCCCceeEEeecccc------
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGY-------EGFLSSCRFIDDTT-LLTG--SGDMKIVTWNLETGQRIHEVAQAHI------ 1824 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh-------~~~Vssvafsdd~~-LlSg--S~DGtI~IWDl~tg~~i~~il~~h~------ 1824 (2004)
||..+++ .......+ ......+.|++++. ++++ +.+..+.+||..+++....+.....
T Consensus 83 ~D~~t~~------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (355)
T d2bbkh_ 83 FDPVTLL------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT 156 (355)
T ss_dssp ECTTTCC------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred EECCCCC------EEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeec
Confidence 9998753 22222211 12234567776554 4444 4567899999999887755422111
Q ss_pred CCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEE
Q psy8748 1825 GDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIAT 1903 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t 1903 (2004)
+....+.++++++.++... .++.+.+++..... ..+...+....+.+++..++.++.+|.+++|++..++....
T Consensus 157 ~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 231 (355)
T d2bbkh_ 157 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFL 231 (355)
T ss_dssp ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEEC
T ss_pred CCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEE
Confidence 1122344444444443322 22233333332221 12344466677888888999999999999999987754321
Q ss_pred EcCCCC----------CCCeEEEEEcCCCCEEEEEeCC----------CeEEEEECCCCeeeEEEccCCCCeEEEEEcCC
Q psy8748 1904 YLPPNK----------NSGFTSCAVSSSGRYIFCGSDD----------NNVHVWDLLKTTHNGVLSGHENRVTSISLSPN 1963 (2004)
Q Consensus 1904 ~~~~~~----------~s~ItsLafSPdG~~LaSGSsD----------GsIrIWDL~tge~l~tL~gHs~~VtsLaFSPD 1963 (2004)
.....+ ......+++++++..++....+ +.|.+||..+++.+..+.. ...+.+++|+||
T Consensus 232 ~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spD 310 (355)
T d2bbkh_ 232 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQD 310 (355)
T ss_dssp CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCS
T ss_pred eccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCC
Confidence 110000 1123457899999988876544 3699999999998888763 456889999999
Q ss_pred CC--EEEEEECCCeEEEEECCCCeEEEEEE
Q psy8748 1964 GM--ALVTSSWDQFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1964 g~--~LaSgS~DGtIrIWdlstg~l~k~Ik 1991 (2004)
|+ ++++++.|+.|++||..+++..+.+.
T Consensus 311 G~~~l~v~~~~d~~i~v~D~~tg~~~~~i~ 340 (355)
T d2bbkh_ 311 EKPLLYALSTGDKTLYIHDAESGEELRSVN 340 (355)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence 97 45677789999999999997766554
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.62 E-value=1.3e-14 Score=165.34 Aligned_cols=281 Identities=12% Similarity=0.000 Sum_probs=189.5
Q ss_pred CCCCCeEEEEEccCCCEEEEeecCCCeEEEEEccCcccccchhhhcccceeeEeecccccccccccCccccccccCCCCc
Q psy8748 1553 PCKEQRNAVSFHACSTLLASLSSYQYTRKAWKKDAMDLLLDPALFQMELRCLRAWKSIVDNLMSQEPATFRDLMMKPTSS 1632 (2004)
Q Consensus 1553 ~Hk~~VtsVsFSPdGk~LASvGSsDGtIrIWDv~t~dlL~~t~l~d~~gr~lkt~~g~~~~V~s~~~~~f~~ll~spdgS 1632 (2004)
+|...+.+++|+|||++++..++.+++|.+||+.+ ++.........
T Consensus 37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-------------~~~~~~~~~~~--------------------- 82 (346)
T d1jmxb_ 37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-------------CKNTFHANLSS--------------------- 82 (346)
T ss_dssp SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-------------TEEEEEEESCC---------------------
T ss_pred CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc-------------Ceeeeeecccc---------------------
Confidence 35557889999999999876578899999999988 44433332200
Q ss_pred chhhhhHhHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCCCCCcccccccccccccccceeEEEEeCCCCEEEEEe-
Q psy8748 1633 INIYLKLQTAELKKELTQLIDKCKEEQAKQADTKLEDVTASMPDAPKVKLMPKKSLKGHINKVNSVHYSGDSRHCVSGS- 1711 (2004)
Q Consensus 1633 idi~i~~~~~ql~k~i~ql~s~l~~~~~~~~~~~~se~~~s~~~~~~lk~~pi~sL~GHt~~VtsLaFSPDG~~LASGS- 1711 (2004)
....+...+..++|+|||+++++++
T Consensus 83 ------------------------------------------------------~~~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 83 ------------------------------------------------------VPGEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp ------------------------------------------------------STTEEEECSSCEEECTTSSEEEEEEE
T ss_pred ------------------------------------------------------cccccCCceEEEEEecCCCEEEEEec
Confidence 0011233456789999999888765
Q ss_pred -----------CCCeEEEEECCCCceEEEeeC--CCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEE
Q psy8748 1712 -----------LDGKLIIWDTWTGNKTQVIPL--RSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIREL 1778 (2004)
Q Consensus 1712 -----------~DGtIrVWDl~Tgk~l~ti~~--Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl 1778 (2004)
.++.+.+|+..+++....+.. ....+..+.+++++..++++ +.+.+|+..++ .....+
T Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~ 179 (346)
T d1jmxb_ 109 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTG------KYTVAL 179 (346)
T ss_dssp EEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTC------CEEEEE
T ss_pred CCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCC------CEEEEE
Confidence 467899999888766544332 23445667777777766653 45889998654 233333
Q ss_pred ecCccceeeeEEeCCC-c-EEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCC
Q psy8748 1779 LGYEGFLSSCRFIDDT-T-LLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREK 1856 (2004)
Q Consensus 1779 ~gh~~~Vssvafsdd~-~-LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~ 1856 (2004)
..+ .....+.+.++. . .+.+..++.+.+++. ...+......+.++..++.+.+||..++
T Consensus 180 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (346)
T d1jmxb_ 180 PLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYT------------------IARFKDDKQDPATADLLYGYLSVDLKTG 240 (346)
T ss_dssp CST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEE------------------EEEC-------CCCEEEEEEEEEETTTC
T ss_pred ecC-CCccceEEeccccEEEEEecCCCceEeeee------------------eeeeccCceeEeeccCCceEEEEECCCC
Confidence 332 223333344332 2 233334444444432 1112223444556666778999999988
Q ss_pred eEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q psy8748 1857 KCVQT-FFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVH 1935 (2004)
Q Consensus 1857 k~I~t-l~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIr 1935 (2004)
..... ...+...+.++.+++++.+++.+. ++.|.+||..+++.+..+.. ...+.+++|+|||+++++|+.||.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~d~~v~ 316 (346)
T d1jmxb_ 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLA 316 (346)
T ss_dssp CEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEE
T ss_pred ceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 75443 456778899999999888887766 56899999999998887743 24588999999999999999999999
Q ss_pred EEECCCCeeeEEEccCCC
Q psy8748 1936 VWDLLKTTHNGVLSGHEN 1953 (2004)
Q Consensus 1936 IWDL~tge~l~tL~gHs~ 1953 (2004)
+||+.+++.+..+..+.+
T Consensus 317 v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 317 VFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp EEETTTTEEEEEEECSSS
T ss_pred EEECccCCEEEEEECCCC
Confidence 999999999999875544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=3.6e-13 Score=153.35 Aligned_cols=251 Identities=13% Similarity=0.192 Sum_probs=169.7
Q ss_pred ccccceeEEEEeCCCCEEEEEe-CCCeEEEEECCCCceEEEe---eCCCCceEEEEEecCCCEEEEeec-CCeEEEEEcC
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSGS-LDGKLIIWDTWTGNKTQVI---PLRSAWVMSVAFAQSGNFVACGGM-DNMCTVYDLN 1764 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASGS-~DGtIrVWDl~Tgk~l~ti---~~Ht~~ItsLafSPdg~~LaSGS~-DGtIrVWDl~ 1764 (2004)
.|.+.|.+++|||||++|++++ .|+.|++|++..+...... ..+...+..++|+|||+++++++. ++.|.+|+..
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~ 113 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 113 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence 3667899999999999986555 5899999998766433222 234455788999999999988875 6789999886
Q ss_pred CCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEee-cCCeEEEEECCCCceeEEe-----eccccCCeEEEEECCCCC
Q psy8748 1765 NRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGS-GDMKIVTWNLETGQRIHEV-----AQAHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1765 t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS-~DGtI~IWDl~tg~~i~~i-----l~~h~~~ItsLafSPdg~ 1837 (2004)
... .........+...+.++.+++++. +++++ .+..|.+|+.......... ..........++|++++.
T Consensus 114 ~~~----~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~ 189 (333)
T d1ri6a_ 114 DGL----PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ 189 (333)
T ss_dssp TTE----EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred ccc----ceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccce
Confidence 542 233334455666777888886654 44444 5567999998765433221 223445568899999999
Q ss_pred EEEEEE-CCCeEEEEECCCCe----EEEEEe------cCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEc
Q psy8748 1838 YFVTGS-VDKSCKLWDFREKK----CVQTFF------GHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYL 1905 (2004)
Q Consensus 1838 ~LaSGS-~DGsIrIWDlrs~k----~I~tl~------~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~ 1905 (2004)
+++... ..+...+|+..... ...... ........+++++++++++... .++.+.+|++..........
T Consensus 190 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (333)
T d1ri6a_ 190 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE 269 (333)
T ss_dssp EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE
Confidence 877665 45677888765322 122221 1234567789999998766554 56789999987654433221
Q ss_pred -CCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEE--ECCCCee
Q psy8748 1906 -PPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVW--DLLKTTH 1944 (2004)
Q Consensus 1906 -~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIW--DL~tge~ 1944 (2004)
.......+..++|+|||++|++++. ++.|++| |..+|+.
T Consensus 270 ~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 270 GFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp EEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred EEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 1122345678899999999887754 6889998 4566654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.37 E-value=2.9e-11 Score=146.99 Aligned_cols=300 Identities=11% Similarity=0.000 Sum_probs=167.8
Q ss_pred ccccccceeEEEEeCCCCEEEEEeC---------CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeE
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSL---------DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMC 1758 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~---------DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtI 1758 (2004)
+.+|...|.++.|||||++|+.++. ++.+.+||+.+++. ..+..+...+..+.|+|||+.++.. .++.+
T Consensus 57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l 134 (470)
T d2bgra1 57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDI 134 (470)
T ss_dssp TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEE
T ss_pred hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccc
Confidence 4557788999999999999998753 57789999998864 4577788899999999999999986 46789
Q ss_pred EEEEcCCCCCCCcce---EEEEEec---------CccceeeeEEeCCCc-EEEeecC-CeE-------------------
Q psy8748 1759 TVYDLNNRDSTGAAK---VIRELLG---------YEGFLSSCRFIDDTT-LLTGSGD-MKI------------------- 1805 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k---~i~sl~g---------h~~~Vssvafsdd~~-LlSgS~D-GtI------------------- 1805 (2004)
.+|+..++....... ....+.+ ..+....+.|++++. ++....| ..+
T Consensus 135 ~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~ 214 (470)
T d2bgra1 135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTV 214 (470)
T ss_dssp EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEE
T ss_pred eEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeee
Confidence 999987653211000 0000011 122334566775544 4443322 212
Q ss_pred ----------------EEEECCCCceeEEe----------eccccCCeEEEEECCCCCEEEEEE-CCC-----eEEEEEC
Q psy8748 1806 ----------------VTWNLETGQRIHEV----------AQAHIGDVVSISLSPDGQYFVTGS-VDK-----SCKLWDF 1853 (2004)
Q Consensus 1806 ----------------~IWDl~tg~~i~~i----------l~~h~~~ItsLafSPdg~~LaSGS-~DG-----sIrIWDl 1853 (2004)
.+|++..+...... .......+..+.|.+++..++... ..+ .+..+|.
T Consensus 215 ~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~ 294 (470)
T d2bgra1 215 RVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (470)
T ss_dssp EEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred eeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecC
Confidence 22333222211000 001112345677887776555432 222 2344455
Q ss_pred CCCeEEEEEe------cCCCC-----eEEEEEeCCC--CEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC
Q psy8748 1854 REKKCVQTFF------GHEAD-----VNSVCFHPSG--LAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1854 rs~k~I~tl~------~h~s~-----ItsIafSPdg--~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP 1920 (2004)
.++....... ..... -....+.+++ .+++.+..||..++|..............+ ...+..+ +++
T Consensus 295 ~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g-~~~v~~~-~~~ 372 (470)
T d2bgra1 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWEVIGI-EAL 372 (470)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCS-SSCEEEE-EEE
T ss_pred CCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccC-CeeEEEE-EEE
Confidence 5555332211 01110 1122344443 345667778876666543322222222222 3456655 444
Q ss_pred CCCEE-EEEeCCC----e--EEEEECCCCeeeEEE----ccCCCCeEEEEEcCCCCEEEE---EECCCeEEEEECCCCeE
Q psy8748 1921 SGRYI-FCGSDDN----N--VHVWDLLKTTHNGVL----SGHENRVTSISLSPNGMALVT---SSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1921 dG~~L-aSGSsDG----s--IrIWDL~tge~l~tL----~gHs~~VtsLaFSPDg~~LaS---gS~DGtIrIWdlstg~l 1986 (2004)
+++.+ ++++.++ . |+-.++..+.....+ .+|...+.+++|||||++++. +...-.+.+|+..+++.
T Consensus 373 d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~ 452 (470)
T d2bgra1 373 TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (470)
T ss_dssp CSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred CCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCE
Confidence 45544 3443322 2 444455544444443 367888999999999999773 33345699999999977
Q ss_pred EEEEE
Q psy8748 1987 WKVLK 1991 (2004)
Q Consensus 1987 ~k~Ik 1991 (2004)
.+.+.
T Consensus 453 v~~le 457 (470)
T d2bgra1 453 LRVLE 457 (470)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.35 E-value=2.2e-11 Score=143.30 Aligned_cols=242 Identities=10% Similarity=-0.035 Sum_probs=165.5
Q ss_pred EEEEeCCCCEEEEEe----------CCCeEEEEECCCCceEEEeeCCCC-------ceEEEEEecCCCEEEEee-cCCeE
Q psy8748 1697 SVHYSGDSRHCVSGS----------LDGKLIIWDTWTGNKTQVIPLRSA-------WVMSVAFAQSGNFVACGG-MDNMC 1758 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS----------~DGtIrVWDl~Tgk~l~ti~~Ht~-------~ItsLafSPdg~~LaSGS-~DGtI 1758 (2004)
.++|+|||+++++.+ .|+.|.+||..+++....+..+.. ....++|+|||++++++. .++.+
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence 588999999888754 367899999999999988765432 234689999999888775 57999
Q ss_pred EEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEe-----eccccCCeEEEEEC
Q psy8748 1759 TVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV-----AQAHIGDVVSISLS 1833 (2004)
Q Consensus 1759 rVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~i-----l~~h~~~ItsLafS 1833 (2004)
.+||+.++ +.......+... .+.......+++.+.||.+..|+.......... ...+...+....+.
T Consensus 149 ~~~d~~~~------~~~~~~~~~~~~--~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (368)
T d1mdah_ 149 AGLSVPGA------SDDQLTKSASCF--HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQAN 220 (368)
T ss_dssp EEEEETTT------EEEEEEECSSCC--CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEET
T ss_pred EEEECCCC------cEeEEeeccCcc--eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccc
Confidence 99999864 333333333222 122234456777888999999988765433221 22334445567788
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEe--cC----------CCCeEEEEEeCCCCEEEEEECC---------CeEEE
Q psy8748 1834 PDGQYFVTGSVDKSCKLWDFREKKCVQTFF--GH----------EADVNSVCFHPSGLAFATGSED---------KTARL 1892 (2004)
Q Consensus 1834 Pdg~~LaSGS~DGsIrIWDlrs~k~I~tl~--~h----------~s~ItsIafSPdg~~LaSgS~D---------GtIrI 1892 (2004)
+++..+... ++.+++++...+....... .+ ......+++++++..+++...+ ..|.+
T Consensus 221 ~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v 298 (368)
T d1mdah_ 221 YPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298 (368)
T ss_dssp TTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred cCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEE
Confidence 887655543 5667777776554332221 11 1123457889998887665432 35999
Q ss_pred EEccCCceeEEEcCCCCCCCeEEEEEcCCCC-E-EEEEeCCCeEEEEECCCCeeeEEEccC
Q psy8748 1893 FDIRADQQIATYLPPNKNSGFTSCAVSSSGR-Y-IFCGSDDNNVHVWDLLKTTHNGVLSGH 1951 (2004)
Q Consensus 1893 WDLrtgk~i~t~~~~~~~s~ItsLafSPdG~-~-LaSGSsDGsIrIWDL~tge~l~tL~gH 1951 (2004)
||..+++.+..+. ....+..++|+|||+ + ++++..++.|++||..+++.+..+...
T Consensus 299 ~D~~t~~~~~~~~---~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g 356 (368)
T d1mdah_ 299 VTASVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EESSSCCEEECCE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred EECCCCcEeEEec---CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence 9999998876653 224577899999997 3 456667899999999999999988743
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.28 E-value=1.2e-10 Score=136.89 Aligned_cols=287 Identities=11% Similarity=-0.011 Sum_probs=187.1
Q ss_pred cccceeEEEEeCCCCEE--E-EEeCCC--eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee----------cC
Q psy8748 1691 HINKVNSVHYSGDSRHC--V-SGSLDG--KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG----------MD 1755 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~L--A-SGS~DG--tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS----------~D 1755 (2004)
+.+....++..++++.. + ....+| .+.+||..+++.+..+..+... .++|+|||+.+++.+ .|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence 44555566667888853 2 223334 4777799999999988877654 589999999888754 47
Q ss_pred CeEEEEEcCCCCCCCcceEEEEEecC-------ccceeeeEEeCCC-cEEEee-cCCeEEEEECCCCceeEEeeccccCC
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIRELLGY-------EGFLSSCRFIDDT-TLLTGS-GDMKIVTWNLETGQRIHEVAQAHIGD 1826 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl~gh-------~~~Vssvafsdd~-~LlSgS-~DGtI~IWDl~tg~~i~~il~~h~~~ 1826 (2004)
+.|.+||..+.+ ....+..+ ......+.|++++ +++++. .++.+.+||+.+++....+.......
T Consensus 96 ~~v~v~D~~t~~------~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 169 (368)
T d1mdah_ 96 DYVEVFDPVTFL------PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH 169 (368)
T ss_dssp EEEEEECTTTCC------EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC
T ss_pred CeEEEEECCCCc------EeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce
Confidence 789999998653 22222211 1223457788655 455554 57999999999998876553222111
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEE------ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCce
Q psy8748 1827 VVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTF------FGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQ 1900 (2004)
Q Consensus 1827 ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl------~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~ 1900 (2004)
+ +......++..+.||.+..|+.......... ..+...+....+.+++..+.+. ++.+.+++...+..
T Consensus 170 ~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~ 243 (368)
T d1mdah_ 170 I----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGA 243 (368)
T ss_dssp C----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCC
T ss_pred E----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCce
Confidence 1 1123446666777888888877654332221 2334445567777787655443 56677777766554
Q ss_pred eEEEcCCCC----------CCCeEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCeeeEEEccCCCCeEEEEEc
Q psy8748 1901 IATYLPPNK----------NSGFTSCAVSSSGRYIFCGSDD---------NNVHVWDLLKTTHNGVLSGHENRVTSISLS 1961 (2004)
Q Consensus 1901 i~t~~~~~~----------~s~ItsLafSPdG~~LaSGSsD---------GsIrIWDL~tge~l~tL~gHs~~VtsLaFS 1961 (2004)
......... ......+++++++..+++...+ ..|++||..+++.+..+. +...+.+++|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~s 322 (368)
T d1mdah_ 244 TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAA 322 (368)
T ss_dssp EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEEC
T ss_pred EEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEEC
Confidence 433221111 0122357889998887765432 359999999999887775 34578899999
Q ss_pred CCCC-E-EEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1962 PNGM-A-LVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1962 PDg~-~-LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
|||+ + ++++..|+.|++||..+++..+.++.
T Consensus 323 pDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 323 QDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp CSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred CCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence 9997 3 45667789999999999987666653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.24 E-value=6.8e-10 Score=134.70 Aligned_cols=258 Identities=10% Similarity=0.032 Sum_probs=141.4
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCC------------------CCceEEEEEecCCCEE
Q psy8748 1688 LKGHINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLR------------------SAWVMSVAFAQSGNFV 1749 (2004)
Q Consensus 1688 L~GHt~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~H------------------t~~ItsLafSPdg~~L 1749 (2004)
+..|.+.+..+.|||||+++|... ++.+++|+..+++..+....+ .+....+.|+|||+.|
T Consensus 107 l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~i 185 (470)
T d2bgra1 107 EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL 185 (470)
T ss_dssp SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEE
T ss_pred cccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCcc
Confidence 445777889999999999999864 678999999888766543221 1234567899999999
Q ss_pred EEeecCCe-EEEEEcCCCCC--CCcceE----------------EEEE----------------------ecCccceeee
Q psy8748 1750 ACGGMDNM-CTVYDLNNRDS--TGAAKV----------------IREL----------------------LGYEGFLSSC 1788 (2004)
Q Consensus 1750 aSGS~DGt-IrVWDl~t~~~--~~~~k~----------------i~sl----------------------~gh~~~Vssv 1788 (2004)
+....|.. +..|.+..... ...... .... ......+..+
T Consensus 186 a~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (470)
T d2bgra1 186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV 265 (470)
T ss_dssp EEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEE
T ss_pred ceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEE
Confidence 99876533 44443321000 000000 0000 0011223345
Q ss_pred EEeCCCcEEEee--cCC-----eEEEEECCCCceeEEee------------ccccCCeEEEEECCCC--CEEEEEECCCe
Q psy8748 1789 RFIDDTTLLTGS--GDM-----KIVTWNLETGQRIHEVA------------QAHIGDVVSISLSPDG--QYFVTGSVDKS 1847 (2004)
Q Consensus 1789 afsdd~~LlSgS--~DG-----tI~IWDl~tg~~i~~il------------~~h~~~ItsLafSPdg--~~LaSGS~DGs 1847 (2004)
.|..++.++... ..+ .++.+|..++....... ..+... ...+.+++ .+++.+..||.
T Consensus 266 ~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~ 343 (470)
T d2bgra1 266 TWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGY 343 (470)
T ss_dssp EEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSC
T ss_pred EEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcC
Confidence 555444433221 111 23344555554331110 011111 22344443 34566667776
Q ss_pred EEE--EECCCCeEEEEEecCCCCeEEEEEeCCCCEE-EEEECCC----e--EEEEEccCCceeEEEc--CCCCCCCeEEE
Q psy8748 1848 CKL--WDFREKKCVQTFFGHEADVNSVCFHPSGLAF-ATGSEDK----T--ARLFDIRADQQIATYL--PPNKNSGFTSC 1916 (2004)
Q Consensus 1848 IrI--WDlrs~k~I~tl~~h~s~ItsIafSPdg~~L-aSgS~DG----t--IrIWDLrtgk~i~t~~--~~~~~s~ItsL 1916 (2004)
.++ |+...+. ...+..+...|..+ ++++++.+ ++++.++ . |.-.++..+.....+. ...+...+..+
T Consensus 344 ~~ly~~~~~g~~-~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~ 421 (470)
T d2bgra1 344 RHICYFQIDKKD-CTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSV 421 (470)
T ss_dssp EEEEEEETTCSC-CEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEE
T ss_pred ceeEEEeccCCc-eeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEE
Confidence 555 4554444 34444455667766 44444444 4444332 2 4434555444444332 23556788999
Q ss_pred EEcCCCCEEEEE---eCCCeEEEEECCCCeeeEEEcc
Q psy8748 1917 AVSSSGRYIFCG---SDDNNVHVWDLLKTTHNGVLSG 1950 (2004)
Q Consensus 1917 afSPdG~~LaSG---SsDGsIrIWDL~tge~l~tL~g 1950 (2004)
+|||||++++.. ...-.+.+|+..+++.+..+..
T Consensus 422 ~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 422 SFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458 (470)
T ss_dssp EECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence 999999998743 2344689999999999988864
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.07 E-value=8.7e-10 Score=134.40 Aligned_cols=269 Identities=14% Similarity=0.109 Sum_probs=181.5
Q ss_pred EEEEeCCCeEEEEECCCCceEEEeeC------------------------------CCCceEEEEEecCCCEEEEe-ecC
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVIPL------------------------------RSAWVMSVAFAQSGNFVACG-GMD 1755 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti~~------------------------------Ht~~ItsLafSPdg~~LaSG-S~D 1755 (2004)
+++|+.+|.|+||++.+++.++++.. |........+.|||+++++. ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 66888999999999999998888642 11223444457899988665 467
Q ss_pred CeEEEEEcCCCCCCCcceEEEEE-ecCccceeeeEEeCCCc--EEEeecCCe------------------EEEEECCCCc
Q psy8748 1756 NMCTVYDLNNRDSTGAAKVIREL-LGYEGFLSSCRFIDDTT--LLTGSGDMK------------------IVTWNLETGQ 1814 (2004)
Q Consensus 1756 GtIrVWDl~t~~~~~~~k~i~sl-~gh~~~Vssvafsdd~~--LlSgS~DGt------------------I~IWDl~tg~ 1814 (2004)
+.|.+||+++. +....+ .........+.+++++. .+++..+.. +..+|..+.+
T Consensus 94 ~rVavIDl~t~------k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~ 167 (441)
T d1qnia2 94 TRVARIRLDIM------KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD 167 (441)
T ss_dssp TEEEEEETTTT------EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred CEEEEEECCCC------cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce
Confidence 89999999865 233322 23456677888874433 333333332 3557888877
Q ss_pred eeEEeeccccCCeEEEEECCCCCEEEEEECC-----------------------------------------CeEEEEEC
Q psy8748 1815 RIHEVAQAHIGDVVSISLSPDGQYFVTGSVD-----------------------------------------KSCKLWDF 1853 (2004)
Q Consensus 1815 ~i~~il~~h~~~ItsLafSPdg~~LaSGS~D-----------------------------------------GsIrIWDl 1853 (2004)
...++.. .+....+.++|+|+++++++.+ +.+.+++.
T Consensus 168 v~~qI~v--~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~ 245 (441)
T d1qnia2 168 VAWQVIV--DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGR 245 (441)
T ss_dssp EEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECS
T ss_pred eeEEEec--CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcc
Confidence 7666533 3457889999999999888754 23444444
Q ss_pred CCCeEEEEEecCCCCeEEEEEeCCCCEEEE-EECCCeEEEEEccCCce----------eEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1854 REKKCVQTFFGHEADVNSVCFHPSGLAFAT-GSEDKTARLFDIRADQQ----------IATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1854 rs~k~I~tl~~h~s~ItsIafSPdg~~LaS-gS~DGtIrIWDLrtgk~----------i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
.....+..+.... ....+.++|||+++++ +..+++|.+||+.+... ..... ....-.....+|+++|
T Consensus 246 ~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~-~~~glgplh~~fd~~g 323 (441)
T d1qnia2 246 GESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE-PELGLGPLHTTFDGRG 323 (441)
T ss_dssp SSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC-CBCCSCEEEEEECSSS
T ss_pred cCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee-cccccCcccceecCCc
Confidence 4445555555443 3578999999998755 56789999999865321 11111 1222334567899999
Q ss_pred CEEEEEeCCCeEEEEECCC----------CeeeEEE-----ccCCCCeEEEEEcCCCCEEEEE---ECCC----------
Q psy8748 1923 RYIFCGSDDNNVHVWDLLK----------TTHNGVL-----SGHENRVTSISLSPNGMALVTS---SWDQ---------- 1974 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~t----------ge~l~tL-----~gHs~~VtsLaFSPDg~~LaSg---S~DG---------- 1974 (2004)
+.+.+...|.+|..|++.. ...+..+ .+|...+.+.+++|||++|+++ +.|+
T Consensus 324 ~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~ 403 (441)
T d1qnia2 324 NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPE 403 (441)
T ss_dssp EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCE
T ss_pred eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCcCCCCCCCc
Confidence 9888889999999999731 1233344 3666667777899999999999 5554
Q ss_pred eEEEEECCCCe
Q psy8748 1975 FVKVWQESNTI 1985 (2004)
Q Consensus 1975 tIrIWdlstg~ 1985 (2004)
.-++.|+.+.+
T Consensus 404 ~~q~~~i~~~~ 414 (441)
T d1qnia2 404 NDQLIDISGEE 414 (441)
T ss_dssp EEEEEECSSSS
T ss_pred cceeEEecCCe
Confidence 35778888654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.81 E-value=8.3e-08 Score=116.72 Aligned_cols=233 Identities=12% Similarity=0.111 Sum_probs=143.1
Q ss_pred cccccceeEEEEeCCCCEEEEEe-CCCeEEEEECCCCceEEEeeC-CCCceEEEEEecCCC--EEEEeecCC--------
Q psy8748 1689 KGHINKVNSVHYSGDSRHCVSGS-LDGKLIIWDTWTGNKTQVIPL-RSAWVMSVAFAQSGN--FVACGGMDN-------- 1756 (2004)
Q Consensus 1689 ~GHt~~VtsLaFSPDG~~LASGS-~DGtIrVWDl~Tgk~l~ti~~-Ht~~ItsLafSPdg~--~LaSGS~DG-------- 1756 (2004)
..|.-......++|||++|++.. .+++|.+||+.+++....+.. +...+..++|+|+|+ +++..+.+.
T Consensus 68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~ 147 (441)
T d1qnia2 68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT 147 (441)
T ss_dssp CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence 34666677777889999986654 678999999999998887754 466799999999998 444444332
Q ss_pred ---------eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEee--------------------------
Q psy8748 1757 ---------MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGS-------------------------- 1800 (2004)
Q Consensus 1757 ---------tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS-------------------------- 1800 (2004)
.+..+|..+.. ....... .+....+.+++++. +++++
T Consensus 148 ~~~~~~~~~~~~~iD~~t~~------v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p 220 (441)
T d1qnia2 148 DFSLDNSYTMFTAIDAETMD------VAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE 220 (441)
T ss_dssp CCCGGGEEEEEEEEETTTCS------EEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHH
T ss_pred ccccccccceEEeecCccce------eeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCcc
Confidence 22345554322 1111111 12233444443322 22222
Q ss_pred ---------------cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEE-EECCCeEEEEECCCCe-------
Q psy8748 1801 ---------------GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVT-GSVDKSCKLWDFREKK------- 1857 (2004)
Q Consensus 1801 ---------------~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaS-GS~DGsIrIWDlrs~k------- 1857 (2004)
.++.+.+++......+..+. . ......+.++|||+++++ +..+++|.+||+.+..
T Consensus 221 ~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IP-v-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~ 298 (441)
T d1qnia2 221 RIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIP-V-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI 298 (441)
T ss_dssp HHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEEC-C-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS
T ss_pred ceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEe-C-CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccC
Confidence 23445555555444443332 2 234578999999998765 5678999999986421
Q ss_pred ----EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCC----------ceeEEEc---CCCCCCCeEEEEEcC
Q psy8748 1858 ----CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRAD----------QQIATYL---PPNKNSGFTSCAVSS 1920 (2004)
Q Consensus 1858 ----~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtg----------k~i~t~~---~~~~~s~ItsLafSP 1920 (2004)
.+.-.....-.....+|.++|+.+.+...|..|..|++... ....++. ..+|...+.+.+++|
T Consensus 299 ~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p 378 (441)
T d1qnia2 299 ELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA 378 (441)
T ss_dssp CGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred CcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC
Confidence 11111112223455689999988888889999999997421 1222221 123333444557899
Q ss_pred CCCEEEEEeC
Q psy8748 1921 SGRYIFCGSD 1930 (2004)
Q Consensus 1921 dG~~LaSGSs 1930 (2004)
||+||++++.
T Consensus 379 dGk~l~s~~k 388 (441)
T d1qnia2 379 DGKWLVVLSK 388 (441)
T ss_dssp CCCEEEEEES
T ss_pred CCcEEEecCc
Confidence 9999999954
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.79 E-value=2.2e-06 Score=101.30 Aligned_cols=274 Identities=10% Similarity=0.132 Sum_probs=159.1
Q ss_pred EEEEeC--CCeEEEE--ECCCCceE--EEee-CCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEe
Q psy8748 1707 CVSGSL--DGKLIIW--DTWTGNKT--QVIP-LRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELL 1779 (2004)
Q Consensus 1707 LASGS~--DGtIrVW--Dl~Tgk~l--~ti~-~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~ 1779 (2004)
|++|+. .|.|+++ |.++++.. .... .....+..|+|+++++.+.++.. +.+..|.+.... ....... .
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~---~~~~~~~-~ 79 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPT---EIVHEAS-H 79 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETT---EEEEEEE-E
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCC---CeEEEee-e
Confidence 555643 4566554 54555432 2222 23445677999999999988764 568888876421 1111111 1
Q ss_pred cCccceeeeEEeCCCc--EE-Eee-cCCeEEEEECCC------------Ccee----EEeeccccCCeEEEEECCCCCEE
Q psy8748 1780 GYEGFLSSCRFIDDTT--LL-TGS-GDMKIVTWNLET------------GQRI----HEVAQAHIGDVVSISLSPDGQYF 1839 (2004)
Q Consensus 1780 gh~~~Vssvafsdd~~--Ll-SgS-~DGtI~IWDl~t------------g~~i----~~il~~h~~~ItsLafSPdg~~L 1839 (2004)
........+.+.+++. ++ ++. ..+.|..+.+.. .... ..........+.++.|+|+|+++
T Consensus 80 ~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l 159 (365)
T d1jofa_ 80 PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYL 159 (365)
T ss_dssp ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred cCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEE
Confidence 1122333444444443 22 221 234454443321 1111 11111223347899999999998
Q ss_pred EEEEC-CCeEEEEECCCC-eE--EEEE--ecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEE-------c
Q psy8748 1840 VTGSV-DKSCKLWDFREK-KC--VQTF--FGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATY-------L 1905 (2004)
Q Consensus 1840 aSGS~-DGsIrIWDlrs~-k~--I~tl--~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~-------~ 1905 (2004)
++++. ...|.+|+.... .. .... .......+.++|+|+++++++.. .+++|.+|++..++..... .
T Consensus 160 ~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~ 239 (365)
T d1jofa_ 160 YSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccc
Confidence 88864 347888876533 22 1222 12356789999999999887666 4788999998765432211 0
Q ss_pred C----------CCCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEE------ccCCCCeEEEEEcC-
Q psy8748 1906 P----------PNKNSGFTSCAVSSSGRYIFCGSD------DNNVHVWDLLKTTHNGVL------SGHENRVTSISLSP- 1962 (2004)
Q Consensus 1906 ~----------~~~~s~ItsLafSPdG~~LaSGSs------DGsIrIWDL~tge~l~tL------~gHs~~VtsLaFSP- 1962 (2004)
. .........+.++|+|++++++.. .+.|..|++.....+... ........+++++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~ 319 (365)
T d1jofa_ 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW 319 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred cccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCC
Confidence 0 011123457899999999988743 234777777543222111 12344567899998
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCe
Q psy8748 1963 NGMALVTSS-WDQFVKVWQESNTI 1985 (2004)
Q Consensus 1963 Dg~~LaSgS-~DGtIrIWdlstg~ 1985 (2004)
+|++|++++ .++.|.+|+++...
T Consensus 320 ~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 320 SDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCEEEEEeCCCCeEEEEEEeCCc
Confidence 899887774 57999999987664
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.79 E-value=1.4e-06 Score=98.79 Aligned_cols=237 Identities=11% Similarity=0.162 Sum_probs=166.0
Q ss_pred ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEec------CccceeeeEEeCC-C-cEEE-eecCCeEE
Q psy8748 1736 WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLG------YEGFLSSCRFIDD-T-TLLT-GSGDMKIV 1806 (2004)
Q Consensus 1736 ~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~g------h~~~Vssvafsdd-~-~LlS-gS~DGtI~ 1806 (2004)
....++++++++.+++-..++.|++|+.+. .....+.. .......+.+.++ + .+++ .+.++.|.
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~ 96 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 96 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTS-------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCCC-------CEEEEecccCCCcccccccccccccccccccceeccCCccccc
Confidence 467899999999888877788999998642 22222211 1112233443332 2 2332 33456777
Q ss_pred EEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCCCCEEEEE
Q psy8748 1807 TWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF--GHEADVNSVCFHPSGLAFATG 1884 (2004)
Q Consensus 1807 IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~--~h~s~ItsIafSPdg~~LaSg 1884 (2004)
.++. .+.....+..........+++.++|+.+++....+.+.+++. +++.+..+. .+......+++.++++.+++.
T Consensus 97 ~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 97 IYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp EECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred cccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeee
Confidence 7775 455554444445566789999999998888777788888885 455566552 345677889999999988888
Q ss_pred ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEcc--CCCCeEEEEEc
Q psy8748 1885 SEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTTHNGVLSG--HENRVTSISLS 1961 (2004)
Q Consensus 1885 S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge~l~tL~g--Hs~~VtsLaFS 1961 (2004)
...+.|++||.. ++.+.++...+.......++++++|+++++-.. ++.|.+|+ .+|+.+..+.. .......+++.
T Consensus 175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~ 252 (279)
T d1q7fa_ 175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALM 252 (279)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEE
T ss_pred ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEe
Confidence 888999999965 677777755555566789999999997776543 45799998 46887777643 33468999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCC
Q psy8748 1962 PNGMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1962 PDg~~LaSgS~DGtIrIWdlstg 1984 (2004)
++|.+++ ++.++.|++|+....
T Consensus 253 ~dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 253 DDGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTTEEEE-EETTTEEEEEECSCC
T ss_pred CCCcEEE-EeCCCeEEEEEeeee
Confidence 9997555 567899999998764
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.67 E-value=2e-06 Score=98.46 Aligned_cols=230 Identities=14% Similarity=0.062 Sum_probs=152.7
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcce
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k 1773 (2004)
.+..++++|||+++++...+++|+.|+.. ++. ..+......+.+++|+++|+++++...++.+..|+.....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~------ 100 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD------ 100 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT------
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccc------
Confidence 57899999999999999999999998844 443 3344566789999999999998888777777777654321
Q ss_pred EEEEEecCccceeeeEEeCCCcEEEeecCCeE-EEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEE
Q psy8748 1774 VIRELLGYEGFLSSCRFIDDTTLLTGSGDMKI-VTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWD 1852 (2004)
Q Consensus 1774 ~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI-~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWD 1852 (2004)
+.+ .+.+. ........+++.++++++++.+.++.+..+|
T Consensus 101 -----------------------------~~~~~~~~~-----------~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~ 140 (302)
T d2p4oa1 101 -----------------------------GTVETLLTL-----------PDAIFLNGITPLSDTQYLTADSYRGAIWLID 140 (302)
T ss_dssp -----------------------------SCEEEEEEC-----------TTCSCEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred -----------------------------cceeecccc-----------CCccccceeEEccCCCEEeeccccccceeee
Confidence 000 01111 1223467788889998888878888888888
Q ss_pred CCCCeEEEEEec----------CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCC
Q psy8748 1853 FREKKCVQTFFG----------HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1853 lrs~k~I~tl~~----------h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG 1922 (2004)
...+........ .......+.+.. +..+++.+..+.|..++.....................++++++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG 219 (302)
T d2p4oa1 141 VVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG 219 (302)
T ss_dssp TTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC
T ss_pred ccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCC
Confidence 887654332211 112355666654 335556667888988887654322111000111234568999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEE--EccCCCCeEEEEE---cCCCCEEEEEECC
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTTHNGV--LSGHENRVTSISL---SPNGMALVTSSWD 1973 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge~l~t--L~gHs~~VtsLaF---SPDg~~LaSgS~D 1973 (2004)
+++++...++.|..|+.. ++.... ....-...++++| ++|++.|+.++..
T Consensus 220 ~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 220 NLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp CEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 988888889999999864 433322 2334456899999 6788888776544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.64 E-value=1.2e-05 Score=90.99 Aligned_cols=239 Identities=11% Similarity=0.204 Sum_probs=159.7
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCC------CCceEEEEEecCC-CEEEE-eecCCeEEEEEcCC
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLR------SAWVMSVAFAQSG-NFVAC-GGMDNMCTVYDLNN 1765 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~H------t~~ItsLafSPdg-~~LaS-GS~DGtIrVWDl~t 1765 (2004)
....++++++|+.+++-..++.|++||. +|+.+..+... ...-..+++..+. ..+++ .+.++.|..++...
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence 4689999999998888777899999995 57777766321 1234556666554 34433 33455676666532
Q ss_pred CCCCCcceEEEEEe-cCccceeeeEEeCCCc-EEEeecCCeEEEEECCCCceeEEe-eccccCCeEEEEECCCCCEEEEE
Q psy8748 1766 RDSTGAAKVIRELL-GYEGFLSSCRFIDDTT-LLTGSGDMKIVTWNLETGQRIHEV-AQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1766 ~~~~~~~k~i~sl~-gh~~~Vssvafsdd~~-LlSgS~DGtI~IWDl~tg~~i~~i-l~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
.....+. ........++..+++. +++....+.+.+++.. ++.+..+ ...+......+++.++++.+++.
T Consensus 103 -------~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 103 -------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp -------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred -------cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeee
Confidence 2222222 2233445566655444 4444556778888764 4444333 23455678889999999988888
Q ss_pred ECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEc
Q psy8748 1843 SVDKSCKLWDFREKKCVQTFF--GHEADVNSVCFHPSGLAFATGSE-DKTARLFDIRADQQIATYLPPNKNSGFTSCAVS 1919 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~I~tl~--~h~s~ItsIafSPdg~~LaSgS~-DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafS 1919 (2004)
...+.|++||. +++.+..+- +......+|++.++|+.+++-.. ++.|.+|+. +|+.+..+...........+++.
T Consensus 175 ~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~ 252 (279)
T d1q7fa_ 175 NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM 252 (279)
T ss_dssp GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred ccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEe
Confidence 88899999996 456666663 23446789999999997776544 457999984 57777666544444567899999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCee
Q psy8748 1920 SSGRYIFCGSDDNNVHVWDLLKTTH 1944 (2004)
Q Consensus 1920 PdG~~LaSGSsDGsIrIWDL~tge~ 1944 (2004)
++|.+++ ++.++.|++|......+
T Consensus 253 ~dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 253 DDGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp TTTEEEE-EETTTEEEEEECSCCCC
T ss_pred CCCcEEE-EeCCCeEEEEEeeeecC
Confidence 9997554 56889999999866543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.63 E-value=3.2e-06 Score=94.79 Aligned_cols=235 Identities=12% Similarity=0.047 Sum_probs=148.0
Q ss_pred ceEEEEEecCCCEEEEe-ecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCC-eEEEEECCCC
Q psy8748 1736 WVMSVAFAQSGNFVACG-GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDM-KIVTWNLETG 1813 (2004)
Q Consensus 1736 ~ItsLafSPdg~~LaSG-S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DG-tI~IWDl~tg 1813 (2004)
.-.+++++++|+.+++. +..+.+..++..... ..... .........+++.+++.++++...+ .+++++-.++
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~-----~~~~~-~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~ 88 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-----TTVLP-FNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN 88 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----C-----EEECC-CCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-----EEEec-cCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc
Confidence 45899999999976664 455777777654321 11111 1222344567777666665555554 4444444433
Q ss_pred ceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEE
Q psy8748 1814 QRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLF 1893 (2004)
Q Consensus 1814 ~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIW 1893 (2004)
... ..........+++++++++++++-..++.+..++..................++++.++++.+++...++.|..+
T Consensus 89 ~~~--~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~ 166 (260)
T d1rwia_ 89 QTV--LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 166 (260)
T ss_dssp CEE--CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEE
T ss_pred eee--eeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccc
Confidence 332 222333567899999999987776667778888765544322222223456789999999988888888999999
Q ss_pred EccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECC
Q psy8748 1894 DIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWD 1973 (2004)
Q Consensus 1894 DLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~D 1973 (2004)
|....... .+. .........++++++|+++++....+.|..++.............-....+|+++++|.++++-..+
T Consensus 167 d~~~~~~~-~~~-~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~ 244 (260)
T d1rwia_ 167 EAESNNQV-VLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN 244 (260)
T ss_dssp CTTTCCEE-ECC-CSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred ccccceee-eee-ccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCC
Confidence 97754332 222 2233456889999999988888788889988865443222222233567899999999877776666
Q ss_pred CeEEEEE
Q psy8748 1974 QFVKVWQ 1980 (2004)
Q Consensus 1974 GtIrIWd 1980 (2004)
+.|+.++
T Consensus 245 ~rI~~i~ 251 (260)
T d1rwia_ 245 DRVVKLT 251 (260)
T ss_dssp TEEEEEC
T ss_pred CEEEEEe
Confidence 6555443
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.57 E-value=3.5e-06 Score=94.46 Aligned_cols=237 Identities=10% Similarity=0.073 Sum_probs=149.5
Q ss_pred cceeEEEEeCCCCEEEEE-eCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCc
Q psy8748 1693 NKVNSVHYSGDSRHCVSG-SLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGA 1771 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASG-S~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~ 1771 (2004)
-.-.+++++++|+..++. +..+.+..++...................++++++++.+++....+.+++++-.+.
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~----- 88 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN----- 88 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC-----
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc-----
Confidence 345799999999966654 45577777765443332222222234578899999998887777776666543322
Q ss_pred ceEEEEEecCccceeeeEEeCCCcEEE-eecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCCeEEE
Q psy8748 1772 AKVIRELLGYEGFLSSCRFIDDTTLLT-GSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDKSCKL 1850 (2004)
Q Consensus 1772 ~k~i~sl~gh~~~Vssvafsdd~~LlS-gS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DGsIrI 1850 (2004)
..... .........+++..++.+++ -..+..+..++........ ..........+++++++++.+++...++.|..
T Consensus 89 -~~~~~-~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~ 165 (260)
T d1rwia_ 89 -QTVLP-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 165 (260)
T ss_dssp -CEECC-CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-CCCCSCCSCCEEEECTTCCEEEEEGGGTEEEE
T ss_pred -eeeee-eeeeeecccccccccceeEeeccccccccccccccceeee-eeecccCCcceeeecCCCCEeeeccccccccc
Confidence 11111 11223456677765544444 4455667777765544332 21222345678999999998888888889999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1851 WDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1851 WDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
+|.............-.....+++.++|+++++....+.|..++...... ..+ ..........++++++|+++++-..
T Consensus 166 ~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~-~~~~~~~P~~i~~d~~g~l~vad~~ 243 (260)
T d1rwia_ 166 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVL-PFTGLNTPLAVAVDSDRTVYVADRG 243 (260)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EEC-CCCSCCCEEEEEECTTCCEEEEEGG
T ss_pred cccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEE-ccCCCCCeEEEEEeCCCCEEEEECC
Confidence 99876544333334445678999999999888887788898888654332 222 2222345688999999988777666
Q ss_pred CCeEEEEEC
Q psy8748 1931 DNNVHVWDL 1939 (2004)
Q Consensus 1931 DGsIrIWDL 1939 (2004)
+++|+.++.
T Consensus 244 ~~rI~~i~~ 252 (260)
T d1rwia_ 244 NDRVVKLTS 252 (260)
T ss_dssp GTEEEEECC
T ss_pred CCEEEEEeC
Confidence 777776654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.56 E-value=1.9e-05 Score=91.43 Aligned_cols=260 Identities=10% Similarity=0.070 Sum_probs=149.9
Q ss_pred cccceeEEEEeCCCCEEEEEeC-------CCeEEEEECCCCceEEEeeCC----CCceEEEEEecCCCEEEEeecCCeEE
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSL-------DGKLIIWDTWTGNKTQVIPLR----SAWVMSVAFAQSGNFVACGGMDNMCT 1759 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~-------DGtIrVWDl~Tgk~l~ti~~H----t~~ItsLafSPdg~~LaSGS~DGtIr 1759 (2004)
.-.....++|.++|+++++... +|+|..||..++......... .+.-..+.|.++++.++++...+.|.
T Consensus 16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~ 95 (314)
T d1pjxa_ 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence 3345667899999997776432 467999998887654433211 22356899999999888877767777
Q ss_pred EEEcCCCCCCCcceEEEEEecCcc---ceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC
Q psy8748 1760 VYDLNNRDSTGAAKVIRELLGYEG---FLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG 1836 (2004)
Q Consensus 1760 VWDl~t~~~~~~~k~i~sl~gh~~---~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg 1836 (2004)
.++.+... ........... ....+.+ ..+|.+++=|...............
T Consensus 96 ~~~~~g~~-----~~~~~~~~~g~~~~~pndl~~---------d~~G~lyvtd~~~~~~~~~~~~~~~------------ 149 (314)
T d1pjxa_ 96 VVQTDGTF-----EEIAKKDSEGRRMQGCNDCAF---------DYEGNLWITAPAGEVAPADYTRSMQ------------ 149 (314)
T ss_dssp EEETTSCE-----EECCSBCTTSCBCBCCCEEEE---------CTTSCEEEEECBCBCTTSCCCBTTS------------
T ss_pred EEeCCCcE-----EEEEeccccccccCCCcEEEE---------CCCCCEEEecCccCcccccccceec------------
Confidence 77765421 00000000000 0111222 2334443333211100000000000
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCC-----EEEEEECCCeEEEEEccCCceeEE---E--cC
Q psy8748 1837 QYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGL-----AFATGSEDKTARLFDIRADQQIAT---Y--LP 1906 (2004)
Q Consensus 1837 ~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~-----~LaSgS~DGtIrIWDLrtgk~i~t---~--~~ 1906 (2004)
..+|.|..++.. ++..... ..-...+.++|+++++ ++++-+..+.|..||+.....+.. + ..
T Consensus 150 ------~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~ 221 (314)
T d1pjxa_ 150 ------EKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP 221 (314)
T ss_dssp ------SSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC
T ss_pred ------cCCceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcc
Confidence 012233333322 2222211 2223357899998764 444556778899998764433221 1 11
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCC
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMA-LVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~-LaSgS~DGtIrIWdlstg 1984 (2004)
.......-.++++.+|++.++....+.|.+||...++....+.......++++|.++++. .++.+.+|.|..+++...
T Consensus 222 ~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 112233567999999998888888999999998888877777776778999999999874 466666788888776543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.54 E-value=2.5e-06 Score=97.71 Aligned_cols=192 Identities=6% Similarity=0.058 Sum_probs=126.5
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECCCC--ceEEEe-eCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCC
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG--NKTQVI-PLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDST 1769 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg--k~l~ti-~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~ 1769 (2004)
+.+.+++|++||+++++...++.+..|+.... ...... .........+++.++++++++.+.++.+..++...+.
T Consensus 68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~-- 145 (302)
T d2p4oa1 68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS-- 145 (302)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE--
T ss_pred CCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCc--
Confidence 46789999999999998888888888876543 222222 2244568899999999999988888888888876532
Q ss_pred CcceEEEEE--------ecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEe-eccccCCeEEEEECCCCCEEE
Q psy8748 1770 GAAKVIREL--------LGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV-AQAHIGDVVSISLSPDGQYFV 1840 (2004)
Q Consensus 1770 ~~~k~i~sl--------~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~i-l~~h~~~ItsLafSPdg~~La 1840 (2004)
......- .........+.+..+..+++.+..+.|+.++.......... ..........++++++|++++
T Consensus 146 --~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~v 223 (302)
T d2p4oa1 146 --GSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG 223 (302)
T ss_dssp --EEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE
T ss_pred --ceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEE
Confidence 1111100 01112334555656666777788899999998765432111 112234456799999999888
Q ss_pred EEECCCeEEEEECCCCeE-EEEEecCCCCeEEEEE---eCCCCEEEEEECCC
Q psy8748 1841 TGSVDKSCKLWDFREKKC-VQTFFGHEADVNSVCF---HPSGLAFATGSEDK 1888 (2004)
Q Consensus 1841 SGS~DGsIrIWDlrs~k~-I~tl~~h~s~ItsIaf---SPdg~~LaSgS~DG 1888 (2004)
+...++.|..++...... +......-...++++| .+|++.|++++..|
T Consensus 224 a~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 224 ATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp ECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence 877889999998754322 2222233456789999 66888887776543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.52 E-value=4.6e-05 Score=87.99 Aligned_cols=235 Identities=11% Similarity=0.098 Sum_probs=151.6
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecC--CeEEEEEcCCCCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMD--NMCTVYDLNNRDS 1768 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~D--GtIrVWDl~t~~~ 1768 (2004)
....+..++|.++|++.++-..+|.|..|+..++.....+.........++++++|+++++...+ ....++.+.....
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence 34456789999999977777788999999988777666666666678999999999988775432 2333444332210
Q ss_pred CCcceEEEEEecCccceeeeEEeCCCcEEEeecC-------CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEE
Q psy8748 1769 TGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD-------MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVT 1841 (2004)
Q Consensus 1769 ~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D-------GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaS 1841 (2004)
.................+.+.+++.++++... +.+..++...+... .+. ........++|+|+++.|++
T Consensus 118 --~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~-~~~-~~~~~pnGia~s~dg~~lyv 193 (319)
T d2dg1a1 118 --NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PII-QNISVANGIALSTDEKVLWV 193 (319)
T ss_dssp --SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEE-EEESSEEEEEECTTSSEEEE
T ss_pred --eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE-EEe-eccceeeeeeeccccceEEE
Confidence 11111111112233556667666666665433 34666665443322 222 22344678999999987755
Q ss_pred E-ECCCeEEEEECCCC-eEEE-------EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCC----
Q psy8748 1842 G-SVDKSCKLWDFREK-KCVQ-------TFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN---- 1908 (2004)
Q Consensus 1842 G-S~DGsIrIWDlrs~-k~I~-------tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~---- 1908 (2004)
+ +..+.|+.||+... .... ...........+++..+|++.++...+|.|.+||- .++.+..+..+.
T Consensus 194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~ 272 (319)
T d2dg1a1 194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEG 272 (319)
T ss_dssp EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGT
T ss_pred ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCC
Confidence 5 45789999997632 1111 11122234668999999998888888999999995 688887775543
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC
Q psy8748 1909 KNSGFTSCAVSSSGRYIFCGSD 1930 (2004)
Q Consensus 1909 ~~s~ItsLafSPdG~~LaSGSs 1930 (2004)
+...+++++|.+++..+++...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 273 HMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp CSCBCCEEEECTTSCEEEEEEE
T ss_pred cCceeeeEEEeCCCCEEEEEcC
Confidence 2335789999998877766554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=1e-05 Score=89.16 Aligned_cols=224 Identities=13% Similarity=0.088 Sum_probs=136.9
Q ss_pred ccccccccccceeEEEEeCCCCEEEEEeCC---CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec-CCeEE
Q psy8748 1684 PKKSLKGHINKVNSVHYSGDSRHCVSGSLD---GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM-DNMCT 1759 (2004)
Q Consensus 1684 pi~sL~GHt~~VtsLaFSPDG~~LASGS~D---GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~-DGtIr 1759 (2004)
-...+..+...+..-+|||||+.||-...+ ..+.+.+...+... .+..+.+......|+|+|..++.... ++...
T Consensus 30 ~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~ 108 (269)
T d2hqsa1 30 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLN 108 (269)
T ss_dssp SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccc
Confidence 344555667888899999999999876543 24666776665544 44556777889999999998876553 33333
Q ss_pred EEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCC-cEEEeecCC--eEEEEECCCCceeEEeeccccCCeEEEEECCC
Q psy8748 1760 VYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDT-TLLTGSGDM--KIVTWNLETGQRIHEVAQAHIGDVVSISLSPD 1835 (2004)
Q Consensus 1760 VWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~-~LlSgS~DG--tI~IWDl~tg~~i~~il~~h~~~ItsLafSPd 1835 (2004)
++...... ... ..............+. .+. .+++...+| .|...+...+... .............|+|+
T Consensus 109 ~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~spd 181 (269)
T d2hqsa1 109 LYVMDLAS----GQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ--RITWEGSQNQDADVSSD 181 (269)
T ss_dssp EEEEETTT----CCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE--ECCCSSSEEEEEEECTT
T ss_pred eeeccccc----ccc-eeeeeccccccccccccccccceecccccCCceEeeeecccccce--eeecccccccccccccc
Confidence 33332211 111 1111222222222333 222 344444454 4666666665443 22345566778899999
Q ss_pred CCEEEEEECCC---eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEEccCCceeEEEcCCCC
Q psy8748 1836 GQYFVTGSVDK---SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED---KTARLFDIRADQQIATYLPPNK 1909 (2004)
Q Consensus 1836 g~~LaSGS~DG---sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D---GtIrIWDLrtgk~i~t~~~~~~ 1909 (2004)
++.++..+.++ .+.+.|...+.. ....+........|+|||+.|+..+.. +.++++++..+... .+. ..
T Consensus 182 g~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~-~lt--~~ 256 (269)
T d2hqsa1 182 GKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA-RLP--AT 256 (269)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE-ECC--CS
T ss_pred cceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EEe--CC
Confidence 99888776554 455556655543 333455667788999999998765543 46889999866543 332 23
Q ss_pred CCCeEEEEEcC
Q psy8748 1910 NSGFTSCAVSS 1920 (2004)
Q Consensus 1910 ~s~ItsLafSP 1920 (2004)
...+...+|+|
T Consensus 257 ~g~~~~p~WSP 267 (269)
T d2hqsa1 257 DGQVKFPAWSP 267 (269)
T ss_dssp SSEEEEEEECC
T ss_pred CCcEEeEEeCC
Confidence 45677888988
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.48 E-value=7.6e-05 Score=81.91 Aligned_cols=233 Identities=15% Similarity=0.094 Sum_probs=141.3
Q ss_pred eEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCC---eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe
Q psy8748 1715 KLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDN---MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI 1791 (2004)
Q Consensus 1715 tIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DG---tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs 1791 (2004)
.|+|.|.. |.....+..+...+.+-+|||||+.|+....+. .+.+.+...+ .......+........|+
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s 91 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-------AVRQVASFPRHNGAPAFS 91 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-------CEEEEECCSSCEEEEEEC
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccC-------ceeEEeeeecccccceec
Confidence 57777864 545555555567788999999999998765432 3555555432 223444556666777788
Q ss_pred CCCc-EEE-eecCCe--EEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-CCC--eEEEEECCCCeEEEEEec
Q psy8748 1792 DDTT-LLT-GSGDMK--IVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDK--SCKLWDFREKKCVQTFFG 1864 (2004)
Q Consensus 1792 dd~~-LlS-gS~DGt--I~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DG--sIrIWDlrs~k~I~tl~~ 1864 (2004)
+++. ++. ...++. +..+........ .............+++++..++..+ .+| .|...+...+.. .....
T Consensus 92 pdg~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~ 168 (269)
T d2hqsa1 92 PDGSKLAFALSKTGSLNLYVMDLASGQIR--QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITW 168 (269)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEE--ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCC
T ss_pred CCCCeeeEeeecCCccceeecccccccce--eeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeec
Confidence 6654 332 223333 333333332222 2223444455667777777555544 444 466667666543 33345
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCC-e--EEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEE
Q psy8748 1865 HEADVNSVCFHPSGLAFATGSEDK-T--ARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD---DNNVHVWD 1938 (2004)
Q Consensus 1865 h~s~ItsIafSPdg~~LaSgS~DG-t--IrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs---DGsIrIWD 1938 (2004)
.........|+|+++.++..+.++ . +.+.+...+.. .... .........|+|||++|+..+. .+.|++++
T Consensus 169 ~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~--~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~ 244 (269)
T d2hqsa1 169 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLS--STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS 244 (269)
T ss_dssp SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECC--CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred ccccccccccccccceeEEEeecCCceeeeEeecccccc--eEee--cCccccceEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 566677889999999887766544 4 44445444433 3322 2344577899999999876554 34689999
Q ss_pred CCCCeeeEEEccCCCCeEEEEEcCC
Q psy8748 1939 LLKTTHNGVLSGHENRVTSISLSPN 1963 (2004)
Q Consensus 1939 L~tge~l~tL~gHs~~VtsLaFSPD 1963 (2004)
+..+.. ..+....+.+...+|+|-
T Consensus 245 ~dg~~~-~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 245 TDGRFK-ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp TTSCCE-EECCCSSSEEEEEEECCC
T ss_pred CCCCCE-EEEeCCCCcEEeEEeCCC
Confidence 876554 556666778889999983
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.39 E-value=2.3e-05 Score=92.31 Aligned_cols=252 Identities=9% Similarity=0.021 Sum_probs=147.8
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEe-eCCCCceEEEEEecCCCEE--EEee-cCCeEEEEEcCC
Q psy8748 1691 HINKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTG-NKTQVI-PLRSAWVMSVAFAQSGNFV--ACGG-MDNMCTVYDLNN 1765 (2004)
Q Consensus 1691 Ht~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tg-k~l~ti-~~Ht~~ItsLafSPdg~~L--aSGS-~DGtIrVWDl~t 1765 (2004)
+...+..|+|++++++|+++.. +.+..|.+... ...... .........+.++++++.+ +++. ..+.|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence 3445678999999999988765 56777766532 222221 1223345567788888743 3332 235565555432
Q ss_pred CCCC----------Cc-ceEEEEEecCccceeeeEEeCCCc-EEEee-cCCeEEEEECCCCceeEEe----eccccCCeE
Q psy8748 1766 RDST----------GA-AKVIRELLGYEGFLSSCRFIDDTT-LLTGS-GDMKIVTWNLETGQRIHEV----AQAHIGDVV 1828 (2004)
Q Consensus 1766 ~~~~----------~~-~k~i~sl~gh~~~Vssvafsdd~~-LlSgS-~DGtI~IWDl~tg~~i~~i----l~~h~~~It 1828 (2004)
.... .. .............+.++.|.+++. +++++ ....|.+|+.......... .........
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr 196 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence 1100 00 011111122334567888987665 55443 3467888876543322111 122345688
Q ss_pred EEEECCCCCEEEEEE-CCCeEEEEECCCCeE--EEE---Ee--------------cCCCCeEEEEEeCCCCEEEEEEC--
Q psy8748 1829 SISLSPDGQYFVTGS-VDKSCKLWDFREKKC--VQT---FF--------------GHEADVNSVCFHPSGLAFATGSE-- 1886 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS-~DGsIrIWDlrs~k~--I~t---l~--------------~h~s~ItsIafSPdg~~LaSgS~-- 1886 (2004)
.++|+|+++++++.. .++.|.+|+...+.. +.. .. .+......+.++|+|++++++..
T Consensus 197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~ 276 (365)
T d1jofa_ 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence 999999999887666 578899999875532 211 11 11123557899999999888753
Q ss_pred ----CCeEEEEEccCCceeEE----EcCCCCCCCeEEEEEcC-CCCEEEEEe-CCCeEEEEECCCCe
Q psy8748 1887 ----DKTARLFDIRADQQIAT----YLPPNKNSGFTSCAVSS-SGRYIFCGS-DDNNVHVWDLLKTT 1943 (2004)
Q Consensus 1887 ----DGtIrIWDLrtgk~i~t----~~~~~~~s~ItsLafSP-dG~~LaSGS-sDGsIrIWDL~tge 1943 (2004)
.+.|..|++.....+.. ............++++| +|++|+++. .++.|.+|++....
T Consensus 277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 23477777764332221 11122234456789998 899887775 57899999875443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=7.7e-05 Score=90.89 Aligned_cols=280 Identities=11% Similarity=0.103 Sum_probs=155.2
Q ss_pred ceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeC-CCCce-----------------EEEEEecCCCEEEEeecC
Q psy8748 1694 KVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPL-RSAWV-----------------MSVAFAQSGNFVACGGMD 1755 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~-Ht~~I-----------------tsLafSPdg~~LaSGS~D 1755 (2004)
.+....|||||+.+|-.. ++.|.+.+..++...+.... ..+.| .++.|||||++|+....|
T Consensus 115 ~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D 193 (465)
T d1xfda1 115 KLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN 193 (465)
T ss_dssp CCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred ccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence 455678999999988775 57899988877766554432 21112 467899999999887643
Q ss_pred -CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEEeecCCeEEEEECCCCceeEEee-----ccccCCeE
Q psy8748 1756 -NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTGSGDMKIVTWNLETGQRIHEVA-----QAHIGDVV 1828 (2004)
Q Consensus 1756 -GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSgS~DGtI~IWDl~tg~~i~~il-----~~h~~~It 1828 (2004)
..|..+.+...... ....+....+.. +.. .....+.++|+.++....... .....-+.
T Consensus 194 ~s~V~~~~~~~~~~~-----------~~p~~~~~~Yp~~G~~----np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~ 258 (465)
T d1xfda1 194 DSRVPIMELPTYTGS-----------IYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT 258 (465)
T ss_dssp CTTSCEEEECCCSSS-----------SSCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred ccccceeeccccccc-----------ccceeeeeeccccCCC----CCceeEEEEecCCCcEEEEEeccCcCccccceee
Confidence 44555555321100 001111122210 000 011357788887665432221 11222477
Q ss_pred EEEECCCCCEEEEEEC-C---CeEEEEECCCCeEEEEEecC-CCCe----EEEEEeCCCCEEEE--EE-CCC--eEEEEE
Q psy8748 1829 SISLSPDGQYFVTGSV-D---KSCKLWDFREKKCVQTFFGH-EADV----NSVCFHPSGLAFAT--GS-EDK--TARLFD 1894 (2004)
Q Consensus 1829 sLafSPdg~~LaSGS~-D---GsIrIWDlrs~k~I~tl~~h-~s~I----tsIafSPdg~~LaS--gS-~DG--tIrIWD 1894 (2004)
.+.|.++++.++.... + ..|.++|..+++....+... ...| ....|+++|+.++. .+ .+| .+...+
T Consensus 259 ~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~ 338 (465)
T d1xfda1 259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHIT 338 (465)
T ss_dssp EEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEE
T ss_pred eeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEE
Confidence 8999999886655432 2 25888999998765554332 2222 34578899875332 22 233 344443
Q ss_pred cc------CCceeEEEcCCCCCCCeEEE-EEcCCCCEEE-EEeCCC--eEEEEE--CCCCeeeEEE---ccCCCCeEEEE
Q psy8748 1895 IR------ADQQIATYLPPNKNSGFTSC-AVSSSGRYIF-CGSDDN--NVHVWD--LLKTTHNGVL---SGHENRVTSIS 1959 (2004)
Q Consensus 1895 Lr------tgk~i~t~~~~~~~s~ItsL-afSPdG~~La-SGSsDG--sIrIWD--L~tge~l~tL---~gHs~~VtsLa 1959 (2004)
+. .++....+ . ...-.|..+ .|+.+++.|+ ++..++ .-++|. +..+.....+ ........++.
T Consensus 339 ~~~~~~~~~~~~~~~L-T-~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~ 416 (465)
T d1xfda1 339 VSSSQPNSSNDNIQSI-T-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSAS 416 (465)
T ss_dssp EECSSCCSSSCCCCBS-C-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEE
T ss_pred eccccccCCCceeEEe-c-cCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEE
Confidence 32 12222222 1 222345554 6888877765 444332 334444 4333222222 13445677999
Q ss_pred EcCCCCEEEEEECC---CeEEEEECCCCeEEEEEE
Q psy8748 1960 LSPNGMALVTSSWD---QFVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1960 FSPDg~~LaSgS~D---GtIrIWdlstg~l~k~Ik 1991 (2004)
|||++++++..... -.+.+++..+++....+.
T Consensus 417 ~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 417 FSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp ECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred ECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence 99999998855433 468899988887666554
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.35 E-value=0.00024 Score=81.86 Aligned_cols=231 Identities=11% Similarity=0.101 Sum_probs=147.6
Q ss_pred CCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec-----CCeEEEE
Q psy8748 1734 SAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG-----DMKIVTW 1808 (2004)
Q Consensus 1734 t~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~-----DGtI~IW 1808 (2004)
...+..++|.++|+.+++-...|.|..|+.+.. ...............+++.+++.++++.. .+.+...
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~------~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~ 112 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK------EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA 112 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTC------CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCC------eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEE
Confidence 334568899999997777777888888877543 22223334445567888887766665542 3446666
Q ss_pred ECCCCceeEEeec-cccCCeEEEEECCCCCEEEEEEC------CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEE
Q psy8748 1809 NLETGQRIHEVAQ-AHIGDVVSISLSPDGQYFVTGSV------DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAF 1881 (2004)
Q Consensus 1809 Dl~tg~~i~~il~-~h~~~ItsLafSPdg~~LaSGS~------DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~L 1881 (2004)
+...+........ ........+++.++|++.++... .|.+..++...+. +..+...-...+.++|+|+++.|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 113 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVL 191 (319)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEE
T ss_pred cCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceE
Confidence 6655544322211 12334778999999986554322 1346666554333 33332333456789999999876
Q ss_pred EEE-ECCCeEEEEEccCCc-eeEE-----EcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEc-----
Q psy8748 1882 ATG-SEDKTARLFDIRADQ-QIAT-----YLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLS----- 1949 (2004)
Q Consensus 1882 aSg-S~DGtIrIWDLrtgk-~i~t-----~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~----- 1949 (2004)
+++ +..++|..||+.... .... ..........-.++++.+|++.++....|.|.+||- .|+.+..+.
T Consensus 192 yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~ 270 (319)
T d2dg1a1 192 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD 270 (319)
T ss_dssp EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGG
T ss_pred EEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcC
Confidence 544 567899999986432 1111 111111223567999999998888888999999994 788887774
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEEC
Q psy8748 1950 -GHENRVTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1950 -gHs~~VtsLaFSPDg~~LaSgS~ 1972 (2004)
++...+++++|.+++..+++...
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 271 EGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp GTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CCcCceeeeEEEeCCCCEEEEEcC
Confidence 34456889999998877766654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.20 E-value=0.00026 Score=81.60 Aligned_cols=196 Identities=11% Similarity=0.118 Sum_probs=123.9
Q ss_pred eeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCC----CceEEEEEecCCCEEEEeecC-------------Ce
Q psy8748 1695 VNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS----AWVMSVAFAQSGNFVACGGMD-------------NM 1757 (2004)
Q Consensus 1695 VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht----~~ItsLafSPdg~~LaSGS~D-------------Gt 1757 (2004)
-..++|.++++.++++...+.|..++...+.......... ...+.+++.++|++.++-... ..
T Consensus 73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~ 152 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence 4689999999988888777788888875543222111111 135789999999988874321 11
Q ss_pred EEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC------cEEEeecCCeEEEEECCCCceeEE--ee----ccccC
Q psy8748 1758 CTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT------TLLTGSGDMKIVTWNLETGQRIHE--VA----QAHIG 1825 (2004)
Q Consensus 1758 IrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~------~LlSgS~DGtI~IWDl~tg~~i~~--il----~~h~~ 1825 (2004)
=++|.+.... +... ....-.....++|.++. .+++-+..+.|..||+.....+.. .. ....+
T Consensus 153 G~v~~~~~dg-----~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~ 226 (314)
T d1pjxa_ 153 GSIYCFTTDG-----QMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG 226 (314)
T ss_dssp EEEEEECTTS-----CEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred ceEEEEeecC-----ceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc
Confidence 1334333211 1111 11112223456665332 344456778899998764433211 11 11223
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEE-EEEECCCeEEEEEcc
Q psy8748 1826 DVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAF-ATGSEDKTARLFDIR 1896 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~L-aSgS~DGtIrIWDLr 1896 (2004)
..-.+++..+|+..++....+.|.+||.+.++....+.......++++|.|+++.| ++.+.+|.|..+++.
T Consensus 227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred cceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 45679999999988887788999999988877666666666788999999998754 555667888888864
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=4.4e-05 Score=93.09 Aligned_cols=277 Identities=13% Similarity=0.089 Sum_probs=162.1
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCC---CCceEEEEEecCCCEEEEee---------cCCeEEEEEcCCC
Q psy8748 1699 HYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLR---SAWVMSVAFAQSGNFVACGG---------MDNMCTVYDLNNR 1766 (2004)
Q Consensus 1699 aFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~H---t~~ItsLafSPdg~~LaSGS---------~DGtIrVWDl~t~ 1766 (2004)
.|.+++.++.. ..+|.|.+||+.+++....+..+ ...+....|+||+++++... ..+.+.++|+.++
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 47777776554 45788999999988765555432 23577888999999887763 3578889999765
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCC-----------------eEE
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGD-----------------VVS 1829 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~-----------------Its 1829 (2004)
. ...+.........+....|++++.-++-..++.|++.+..++........+..+. -.+
T Consensus 102 ~----~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a 177 (465)
T d1xfda1 102 D----PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (465)
T ss_dssp C----CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred c----eeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccce
Confidence 3 2222222223445556788877765555567889999988776654443332222 257
Q ss_pred EEECCCCCEEEEEECC-C---------------------------------eEEEEECCCCeEEEEEe------cCCCCe
Q psy8748 1830 ISLSPDGQYFVTGSVD-K---------------------------------SCKLWDFREKKCVQTFF------GHEADV 1869 (2004)
Q Consensus 1830 LafSPdg~~LaSGS~D-G---------------------------------sIrIWDlrs~k~I~tl~------~h~s~I 1869 (2004)
+-|+|||++|+....| . .+.++|+..+....... ....-+
T Consensus 178 ~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~ 257 (465)
T d1xfda1 178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI 257 (465)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred EEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcccccee
Confidence 7899999999986532 2 24444544332211111 112236
Q ss_pred EEEEEeCCCCEEEEEEC-C---CeEEEEEccCCceeEEEcCCCCCCC----eEEEEEcCCCCEEE---EEeCCC--eEEE
Q psy8748 1870 NSVCFHPSGLAFATGSE-D---KTARLFDIRADQQIATYLPPNKNSG----FTSCAVSSSGRYIF---CGSDDN--NVHV 1936 (2004)
Q Consensus 1870 tsIafSPdg~~LaSgS~-D---GtIrIWDLrtgk~i~t~~~~~~~s~----ItsLafSPdG~~La---SGSsDG--sIrI 1936 (2004)
..+.|+++++.++.... + ..+.++|..+++......... ... -....|+++|+.++ ....+| .++.
T Consensus 258 ~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~-~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~ 336 (465)
T d1xfda1 258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES-EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (465)
T ss_dssp EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC-SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred eeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC-CceEeccCCceeEccCCCeeEEEEeeeecccCceEE
Confidence 77899999886665443 2 258889999887765442111 111 13457899998543 222333 3444
Q ss_pred EECC------CCeeeEEEccCCCCeEEE-EEcCCCCEEE-EEECC--CeEEEEEC
Q psy8748 1937 WDLL------KTTHNGVLSGHENRVTSI-SLSPNGMALV-TSSWD--QFVKVWQE 1981 (2004)
Q Consensus 1937 WDL~------tge~l~tL~gHs~~VtsL-aFSPDg~~La-SgS~D--GtIrIWdl 1981 (2004)
+++. .+.....+....-.|..+ .|+.+++.|+ ++..+ +.-.+|.+
T Consensus 337 ~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v 391 (465)
T d1xfda1 337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (465)
T ss_dssp EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred EEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEE
Confidence 4321 233333444334456665 6888877665 44333 23345544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.15 E-value=0.00092 Score=76.11 Aligned_cols=221 Identities=13% Similarity=0.113 Sum_probs=145.6
Q ss_pred EEEEecCCC-EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeE
Q psy8748 1739 SVAFAQSGN-FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIH 1817 (2004)
Q Consensus 1739 sLafSPdg~-~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~ 1817 (2004)
+..|++..+ ++.+=-..+.|.-||..++. .. .......+.++.+.+++.+++++.+ .+..+|..+++...
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~-------~~-~~~~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~ 92 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGR-------KT-VHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTL 92 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTE-------EE-EEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCe-------EE-EEECCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeE
Confidence 456776444 44444456788888876542 11 1223445677787777777777765 58899999887643
Q ss_pred Eeecc---ccCCeEEEEECCCCCEEEEEEC----CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE-ECCCe
Q psy8748 1818 EVAQA---HIGDVVSISLSPDGQYFVTGSV----DKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATG-SEDKT 1889 (2004)
Q Consensus 1818 ~il~~---h~~~ItsLafSPdg~~LaSGS~----DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSg-S~DGt 1889 (2004)
..... ....+..+.+.|+|++.++... .+.-.+|.+..++...... .-...+.++|+++++.++.+ +..+.
T Consensus 93 l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~ 171 (295)
T d2ghsa1 93 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNR 171 (295)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCE
T ss_pred EeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccce
Confidence 22111 1234788999999986655432 2344566666666544443 23456789999999876544 55778
Q ss_pred EEEEEccCC------ceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEc-C
Q psy8748 1890 ARLFDIRAD------QQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLS-P 1962 (2004)
Q Consensus 1890 IrIWDLrtg------k~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFS-P 1962 (2004)
|..|++... +................++++.+|++.++.-..|.|..|| ..++.+..+.-....+++++|- +
T Consensus 172 I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~ 250 (295)
T d2ghsa1 172 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGP 250 (295)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEEST
T ss_pred eeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCC
Confidence 999987432 1222222233345577899999999888888889999999 5788888887666789999996 5
Q ss_pred CCCEEEEE
Q psy8748 1963 NGMALVTS 1970 (2004)
Q Consensus 1963 Dg~~LaSg 1970 (2004)
|.+.|+..
T Consensus 251 d~~~LyvT 258 (295)
T d2ghsa1 251 DASRLLVT 258 (295)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEE
Confidence 66655443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.71 E-value=0.0017 Score=70.76 Aligned_cols=235 Identities=11% Similarity=0.053 Sum_probs=120.5
Q ss_pred EEeCC--CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeec-C-----CeEEEEEcCCCCCCC
Q psy8748 1699 HYSGD--SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGM-D-----NMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1699 aFSPD--G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~-D-----GtIrVWDl~t~~~~~ 1770 (2004)
..||| |+.+|-.+ +|.|.+.|+.+++.. .+..+.+.+...+|+|||+.|+.... + +.|.+++...+....
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 45788 99888664 567999999888765 45667777899999999998886542 2 235666665442110
Q ss_pred cceEEEEEecCccceeeeEEeCCCcEEEee-c------CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDTTLLTGS-G------DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS 1843 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~~LlSgS-~------DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS 1843 (2004)
...................|++++..+..+ . ...+...+...+.... .+........+.+.+..++...
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 158 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLGPATHILFADGRRVIGRNT 158 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSCSCSEEEEETTEEEEEESC
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE----ecCCccceeeecCCCeEEEeec
Confidence 000001111222334456677655433322 1 1234455554443321 1122222333333333333322
Q ss_pred CCC-----------eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC--CeEEEEEccCCceeEEEcCCCCC
Q psy8748 1844 VDK-----------SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED--KTARLFDIRADQQIATYLPPNKN 1910 (2004)
Q Consensus 1844 ~DG-----------sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D--GtIrIWDLrtgk~i~t~~~~~~~ 1910 (2004)
.+. ....+........ .............++++. .+.....+ ..|.++|+.++.... +.. ...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~-lt~-~~~ 234 (281)
T d1k32a2 159 FELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRK-HTS-FTD 234 (281)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEE-CCC-CCS
T ss_pred cccceeeeeccCCcceeeeecccccee-eccCCccccceeeeeccc-cceecccccccceEEEeCCCCceEE-eec-CCC
Confidence 211 1112222222222 222333444555566553 23333333 357777887655433 221 211
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q psy8748 1911 SGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNG 1946 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~ 1946 (2004)
. ....|+|||+.|+.. .+|.|+++|+.+++...
T Consensus 235 ~--~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 235 Y--YPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp S--CEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred c--ccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 2 234689999998764 57889999998876554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.69 E-value=0.011 Score=67.01 Aligned_cols=221 Identities=16% Similarity=0.084 Sum_probs=141.8
Q ss_pred eEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceE
Q psy8748 1696 NSVHYSGDSR-HCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1696 tsLaFSPDG~-~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
-+..|++... +..+=-..+.|..||..+++.. .+. ....+.++++.++|.+++++ .+ .+..+|..+++ ...
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~----~~~ 92 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV----LTL 92 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC----EEE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEE-eC-ccEEeecccce----eeE
Confidence 3567887544 4445446789999999888654 333 34568899999988777654 44 48889987653 222
Q ss_pred EEEEec--CccceeeeEEeCCCcEEEeec-----CCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEE-ECCC
Q psy8748 1775 IRELLG--YEGFLSSCRFIDDTTLLTGSG-----DMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTG-SVDK 1846 (2004)
Q Consensus 1775 i~sl~g--h~~~Vssvafsdd~~LlSgS~-----DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSG-S~DG 1846 (2004)
...... ....+..+...+++.+..++. .+.-.+|.+..++.. ... ........++|+++++.++.+ +..+
T Consensus 93 l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~-~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~ 170 (295)
T d2ghsa1 93 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT-KLF-ADISIPNSICFSPDGTTGYFVDTKVN 170 (295)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE-EEE-EEESSEEEEEECTTSCEEEEEETTTC
T ss_pred EeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEE-EEe-eccCCcceeeecCCCceEEEeecccc
Confidence 221111 122455666666666666653 233455655555443 222 223446789999999876655 4567
Q ss_pred eEEEEECCCC------e--EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEE
Q psy8748 1847 SCKLWDFREK------K--CVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPNKNSGFTSCAV 1918 (2004)
Q Consensus 1847 sIrIWDlrs~------k--~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLaf 1918 (2004)
.|..|++... + ......+..+....+++..+|++.++.-..|.|..||. .++.+..+..+. ..+++++|
T Consensus 171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~--~~~T~~~F 247 (295)
T d2ghsa1 171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPAF 247 (295)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEEE
T ss_pred eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCC--CceEEEEE
Confidence 8988887421 1 12223344556789999999998877777889999995 588888876554 45899999
Q ss_pred c-CCCCEEEEEe
Q psy8748 1919 S-SSGRYIFCGS 1929 (2004)
Q Consensus 1919 S-PdG~~LaSGS 1929 (2004)
- ++.+.|++.+
T Consensus 248 GG~d~~~LyvTt 259 (295)
T d2ghsa1 248 IGPDASRLLVTS 259 (295)
T ss_dssp ESTTSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 6 6777666543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.59 E-value=0.0077 Score=74.76 Aligned_cols=286 Identities=11% Similarity=0.039 Sum_probs=167.8
Q ss_pred CCCEEEEEeCCCeEEEEECC-CCceEEEeeCCCC-----------ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCC
Q psy8748 1703 DSRHCVSGSLDGKLIIWDTW-TGNKTQVIPLRSA-----------WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTG 1770 (2004)
Q Consensus 1703 DG~~LASGS~DGtIrVWDl~-Tgk~l~ti~~Ht~-----------~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~ 1770 (2004)
+|..+++.+.++.|...|.. +|+.+.++..... .-+.+++. +..++.++.||.+...|.++++...
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence 44443443446889888974 7999988752111 00223443 4567788899999998988764211
Q ss_pred cceEEEEEecCccceeeeEEeCCCcEEEeec------CCeEEEEECCCCceeEEeeccc---------------------
Q psy8748 1771 AAKVIRELLGYEGFLSSCRFIDDTTLLTGSG------DMKIVTWNLETGQRIHEVAQAH--------------------- 1823 (2004)
Q Consensus 1771 ~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~------DGtI~IWDl~tg~~i~~il~~h--------------------- 1823 (2004)
...... ......++..-..-++.++++.. +|.|+-+|..+|+.+.+.....
T Consensus 140 ~~~~~~--~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~ 217 (571)
T d2ad6a1 140 EVEVCD--PKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCC--GGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred cccccc--cccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 111000 00111222222223345555553 6889999999999886542110
Q ss_pred ---------------cCCe-EEEEECCCCCEEEEEEC----------------CCeEEEEECCCCeEEEEEecCCCCeE-
Q psy8748 1824 ---------------IGDV-VSISLSPDGQYFVTGSV----------------DKSCKLWDFREKKCVQTFFGHEADVN- 1870 (2004)
Q Consensus 1824 ---------------~~~I-tsLafSPdg~~LaSGS~----------------DGsIrIWDlrs~k~I~tl~~h~s~It- 1870 (2004)
.+.+ ...+++++...++.+.. ...+.-.|.++++.+..+......+.
T Consensus 218 ~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd 297 (571)
T d2ad6a1 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred cccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccc
Confidence 1112 23566777777776654 24688889999998887764332222
Q ss_pred --------EEEEeCCCC---EEEEEECCCeEEEEEccCCceeEEEcCCCC------------------------------
Q psy8748 1871 --------SVCFHPSGL---AFATGSEDKTARLFDIRADQQIATYLPPNK------------------------------ 1909 (2004)
Q Consensus 1871 --------sIafSPdg~---~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~------------------------------ 1909 (2004)
......+++ .++.++.+|.+.++|..+++.+........
T Consensus 298 ~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~ 377 (571)
T d2ad6a1 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN 377 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred cccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceE
Confidence 222233443 467788999999999999987754311100
Q ss_pred -----CC--CeEEEEEcCCCCEEEEEeCC-------------------------------------CeEEEEECCCCeee
Q psy8748 1910 -----NS--GFTSCAVSSSGRYIFCGSDD-------------------------------------NNVHVWDLLKTTHN 1945 (2004)
Q Consensus 1910 -----~s--~ItsLafSPdG~~LaSGSsD-------------------------------------GsIrIWDL~tge~l 1945 (2004)
.+ .-...+++|+...+++...+ |.|.-+|+.+++.+
T Consensus 378 ~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~ 457 (571)
T d2ad6a1 378 ICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK 457 (571)
T ss_dssp ESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred EEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCcee
Confidence 00 00125777877777664433 45777788888777
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEee
Q psy8748 1946 GVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVY 1993 (2004)
Q Consensus 1946 ~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~ 1993 (2004)
.....-. +..+=...-.+.++++|+.||.++.+|.++|+.+-..+..
T Consensus 458 W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~ 504 (571)
T d2ad6a1 458 WTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp EEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECC
Confidence 6654211 1111111224667888999999999999998765445443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.051 Score=60.47 Aligned_cols=239 Identities=9% Similarity=-0.035 Sum_probs=143.8
Q ss_pred CeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEee-cCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-
Q psy8748 1714 GKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGG-MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI- 1791 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS-~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs- 1791 (2004)
..|+-.++.+......+. ....+.+++|++.++.+.-.. .++.|.-.+++...... ............+..+++.
T Consensus 10 ~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~--~~~~~~~~~~~~p~glAvD~ 86 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--SYDTVISRDIQAPDGLAVDW 86 (266)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------CEEEECSSCSCCCEEEEET
T ss_pred CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCc--ceEEEEeCCCCCcceEEEee
Confidence 358888887665554444 445678999998877666554 55667766665422111 1111222222344455554
Q ss_pred -CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE--CCCeEEEEECCCCeEEEEEecCCCC
Q psy8748 1792 -DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS--VDKSCKLWDFREKKCVQTFFGHEAD 1868 (2004)
Q Consensus 1792 -dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS--~DGsIrIWDlrs~k~I~tl~~h~s~ 1868 (2004)
.++..++-...+.|.+.++...... ............++++|...+++... ..+.|...++............-..
T Consensus 87 ~~~~lY~~d~~~~~I~v~~~~g~~~~-~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~ 165 (266)
T d1ijqa1 87 IHSNIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 165 (266)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred ccceEEEEecCCCEEEeEecCCceEE-EEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccce
Confidence 4555566667789999998866544 33344456688999999766666554 3456777777654443333333456
Q ss_pred eEEEEEeCCCCEEEEE-ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeE
Q psy8748 1869 VNSVCFHPSGLAFATG-SEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNG 1946 (2004)
Q Consensus 1869 ItsIafSPdg~~LaSg-S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~ 1946 (2004)
..++++.+.++.|+.+ ...+.|...|+....................+++. +.+|+..+ .++.|+..+..++....
T Consensus 166 p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~ 243 (266)
T d1ijqa1 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVN 243 (266)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred eeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceE
Confidence 7899999977766655 55678999998765444333333333345667766 34555544 66888888888877666
Q ss_pred EEccCCCCeEEE
Q psy8748 1947 VLSGHENRVTSI 1958 (2004)
Q Consensus 1947 tL~gHs~~VtsL 1958 (2004)
.+......+.++
T Consensus 244 ~~~~~~~~p~~i 255 (266)
T d1ijqa1 244 LLAENLLSPEDM 255 (266)
T ss_dssp EEECSCSCCCCE
T ss_pred EEEcCCCCceEE
Confidence 665444444444
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.56 E-value=0.048 Score=61.71 Aligned_cols=253 Identities=11% Similarity=0.149 Sum_probs=164.8
Q ss_pred CCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC
Q psy8748 1713 DGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID 1792 (2004)
Q Consensus 1713 DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd 1792 (2004)
...|.|.|+.++....+-+... .+.-.+|..+.++.-+ ...+.++|+++. ..++...- ...+.--.|.+
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi~A---dsAIMhP~~~IiALra-g~~LQiFnletK------~klks~~~-~e~VvfWkWis 112 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPISA---DSAIMNPASKVIALKA-GKTLQIFNIEMK------SKMKAHTM-TDDVTFWKWIS 112 (327)
T ss_dssp EEEEEEEETTSTTSCEEEECCC---SEEEECSSSSEEEEEE-TTEEEEEETTTT------EEEEEEEC-SSCCCEEEESS
T ss_pred CceEEEEECCCCCcceecccch---hhhhcCCCCcEEEEec-CCeEEEEehhHh------hhhceEEc-CCCcEEEEecC
Confidence 3578999998776443332221 2344678888877765 568999999864 33333333 33555666777
Q ss_pred CCcEEEeecCCeEEEEECCCCceeEEeecccc----CCeEEEEECCCCCEEEEEE-------CCCeEEEEECCCCeEEEE
Q psy8748 1793 DTTLLTGSGDMKIVTWNLETGQRIHEVAQAHI----GDVVSISLSPDGQYFVTGS-------VDKSCKLWDFREKKCVQT 1861 (2004)
Q Consensus 1793 d~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~----~~ItsLafSPdg~~LaSGS-------~DGsIrIWDlrs~k~I~t 1861 (2004)
++.+...+. ..|+-|+++......+++..|. ..|..-..++++++++..| -.|.+.+|..+.+. -+.
T Consensus 113 ~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ 190 (327)
T d1utca2 113 LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQP 190 (327)
T ss_dssp SSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEE
T ss_pred CCEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Ccc
Confidence 777665554 5799999965554445554443 4678888899999887654 23678999987554 456
Q ss_pred EecCCCCeEEEEEeCCC---CEEEEEE---CCCeEEEEEccCCc---e-----eEEE--cCCCCCCCeEEEEEcCCCCEE
Q psy8748 1862 FFGHEADVNSVCFHPSG---LAFATGS---EDKTARLFDIRADQ---Q-----IATY--LPPNKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1862 l~~h~s~ItsIafSPdg---~~LaSgS---~DGtIrIWDLrtgk---~-----i~t~--~~~~~~s~ItsLafSPdG~~L 1925 (2004)
+.+|.+....+.+..+. +.|+.+. ..+++++.++.... . .... .+.....-..++.+++.-..+
T Consensus 191 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygii 270 (327)
T d1utca2 191 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV 270 (327)
T ss_dssp ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEE
T ss_pred ccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEE
Confidence 66765544444332211 2233322 23689999986521 1 1111 112223445688999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q psy8748 1926 FCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKV 1978 (2004)
Q Consensus 1926 aSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrI 1978 (2004)
+.-+.-|.|++||+.++.++..-+-....|..-+-+.+..-++....+|.|.-
T Consensus 271 yviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 271 FLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred EEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 99999999999999999999888777777776666666666777778887653
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.47 E-value=0.013 Score=72.57 Aligned_cols=280 Identities=12% Similarity=0.073 Sum_probs=169.6
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCCC-----------ceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcce
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRSA-----------WVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~-----------~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k 1773 (2004)
..++.++.++.|.-.|.++|+.+..+..... .-..++.. +..++.+..++.+...|..+++.
T Consensus 67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~Alda~tG~~----- 139 (560)
T d1kv9a2 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTLDGRLIALDAKTGKA----- 139 (560)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEEETTTCCE-----
T ss_pred CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee--CCeEEEEeCCCEEEEEECCCCcE-----
Confidence 3566677789999999999999988742211 00112221 45678888889888888876642
Q ss_pred EEEEEecC----ccceeeeEEeCCCcEEEeec------CCeEEEEECCCCceeEEeeccc--------------------
Q psy8748 1774 VIRELLGY----EGFLSSCRFIDDTTLLTGSG------DMKIVTWNLETGQRIHEVAQAH-------------------- 1823 (2004)
Q Consensus 1774 ~i~sl~gh----~~~Vssvafsdd~~LlSgS~------DGtI~IWDl~tg~~i~~il~~h-------------------- 1823 (2004)
.-..... ...+.......++.++++.. .|.|.-+|.++|+.+.+.....
T Consensus 140 -~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~ 218 (560)
T d1kv9a2 140 -IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (560)
T ss_dssp -EEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred -EeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccc
Confidence 1111111 11111111112344555432 3789999999999887763211
Q ss_pred ---------cCCe-EEEEECCCCCEEEEEEC-------------------CCeEEEEECCCCeEEEEEecCCCCeE----
Q psy8748 1824 ---------IGDV-VSISLSPDGQYFVTGSV-------------------DKSCKLWDFREKKCVQTFFGHEADVN---- 1870 (2004)
Q Consensus 1824 ---------~~~I-tsLafSPdg~~LaSGS~-------------------DGsIrIWDlrs~k~I~tl~~h~s~It---- 1870 (2004)
...+ ..+++.++.+.++.+.. ...|.-.|.++++....++.....+.
T Consensus 219 ~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~ 298 (560)
T d1kv9a2 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA 298 (560)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred ccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccc
Confidence 1111 23566777777665442 23577789999998777654333222
Q ss_pred -----EEEEeCCC---CEEEEEECCCeEEEEEccCCceeEEEcCCCC--------------------------------C
Q psy8748 1871 -----SVCFHPSG---LAFATGSEDKTARLFDIRADQQIATYLPPNK--------------------------------N 1910 (2004)
Q Consensus 1871 -----sIafSPdg---~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~--------------------------------~ 1910 (2004)
-+....++ ..++.++.+|.+.++|..+++.+........ .
T Consensus 299 ~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~ 378 (560)
T d1kv9a2 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (560)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred cceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccc
Confidence 12222244 3577788899999999999988765422110 0
Q ss_pred --CCeEEEEEcCCCCEEEEEeC------------------------------------CCeEEEEECCCCeeeEEEccCC
Q psy8748 1911 --SGFTSCAVSSSGRYIFCGSD------------------------------------DNNVHVWDLLKTTHNGVLSGHE 1952 (2004)
Q Consensus 1911 --s~ItsLafSPdG~~LaSGSs------------------------------------DGsIrIWDL~tge~l~tL~gHs 1952 (2004)
..-...+++|+...+++... .|.|.-||+.+++.+......
T Consensus 379 Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~- 457 (560)
T d1kv9a2 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP- 457 (560)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-
T ss_pred cccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC-
Confidence 00113567777777665442 256888999999988776422
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEee
Q psy8748 1953 NRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVY 1993 (2004)
Q Consensus 1953 ~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~ 1993 (2004)
.+..+=.+.-.+.+++.|+.||.++.+|.++|+.+-..+..
T Consensus 458 ~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~ 498 (560)
T d1kv9a2 458 THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (560)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence 22222123335678888999999999999999765555543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.46 E-value=0.012 Score=73.31 Aligned_cols=287 Identities=8% Similarity=0.064 Sum_probs=168.4
Q ss_pred CCCEEEEEeCCCeEEEEEC-CCCceEEEeeCCCC-----------ceEEEEEecC----CCEEEEeecCCeEEEEEcCCC
Q psy8748 1703 DSRHCVSGSLDGKLIIWDT-WTGNKTQVIPLRSA-----------WVMSVAFAQS----GNFVACGGMDNMCTVYDLNNR 1766 (2004)
Q Consensus 1703 DG~~LASGS~DGtIrVWDl-~Tgk~l~ti~~Ht~-----------~ItsLafSPd----g~~LaSGS~DGtIrVWDl~t~ 1766 (2004)
+|..+++++.++.+...|. ++|+.+..+..... .-+.+++.++ +..++.++.|+.+...|..++
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 3444444555677888886 57998888742211 1134555443 347888999999999998876
Q ss_pred CCCCcceEEEEEecCccceeeeEEeCCCcEEEeec------CCeEEEEECCCCceeEEeeccc-----------------
Q psy8748 1767 DSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG------DMKIVTWNLETGQRIHEVAQAH----------------- 1823 (2004)
Q Consensus 1767 ~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~------DGtI~IWDl~tg~~i~~il~~h----------------- 1823 (2004)
+........ -......++..-..-++.++++.. .|.|+-+|..+|+.+.+.....
T Consensus 142 ~~~w~~~~~--d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~ 219 (596)
T d1w6sa_ 142 ETVWKVENS--DIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (596)
T ss_dssp CEEEEEECC--CGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred ceecccccc--ccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccc
Confidence 422111000 000111222222223455666653 4899999999999887653210
Q ss_pred -------------------cC-CeEEEEECCCCCEEEEEECC----------------CeEEEEECCCCeEEEEEecCCC
Q psy8748 1824 -------------------IG-DVVSISLSPDGQYFVTGSVD----------------KSCKLWDFREKKCVQTFFGHEA 1867 (2004)
Q Consensus 1824 -------------------~~-~ItsLafSPdg~~LaSGS~D----------------GsIrIWDlrs~k~I~tl~~h~s 1867 (2004)
.. .-..+++++....++.+..+ ..|.-.|.++++.+..++....
T Consensus 220 ~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~ 299 (596)
T d1w6sa_ 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (596)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceec
Confidence 01 11235667777777766533 3588889999998887754322
Q ss_pred C---------eEEEEE-eCCC---CEEEEEECCCeEEEEEccCCceeEEEcCCCCC------------------------
Q psy8748 1868 D---------VNSVCF-HPSG---LAFATGSEDKTARLFDIRADQQIATYLPPNKN------------------------ 1910 (2004)
Q Consensus 1868 ~---------ItsIaf-SPdg---~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~~------------------------ 1910 (2004)
. +.-+.. ..+| +.++....+|.+.++|..+|+.+.........
T Consensus 300 D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~ 379 (596)
T d1w6sa_ 300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMD 379 (596)
T ss_dssp CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTT
T ss_pred cccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccccccccccccccCccccccCC
Confidence 1 111221 2344 35778889999999999999887543211100
Q ss_pred -------------CCeEEEEEcCCCCEEEEEeCC---------------------------------------CeEEEEE
Q psy8748 1911 -------------SGFTSCAVSSSGRYIFCGSDD---------------------------------------NNVHVWD 1938 (2004)
Q Consensus 1911 -------------s~ItsLafSPdG~~LaSGSsD---------------------------------------GsIrIWD 1938 (2004)
..-...+++|+..++++...+ |.|.-||
T Consensus 380 ~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D 459 (596)
T d1w6sa_ 380 HLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYN 459 (596)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred ccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceEEEEe
Confidence 000124666666665554221 4677788
Q ss_pred CCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEe
Q psy8748 1939 LLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKV 1992 (2004)
Q Consensus 1939 L~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~ 1992 (2004)
..+++.+..... ..++.+=.++..|.+++.|+.||.++.+|.++|+.+-..+.
T Consensus 460 ~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~ 512 (596)
T d1w6sa_ 460 AITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (596)
T ss_dssp TTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence 888887765432 12222212233577888899999999999999976544443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.33 E-value=0.024 Score=64.83 Aligned_cols=273 Identities=14% Similarity=0.106 Sum_probs=144.4
Q ss_pred eEEEEeCCCCEEEEEeCC-----C------eEEEEECCCCceEE--Ee-eCCCCceEEEEEecCCCEEEEeecC-CeEEE
Q psy8748 1696 NSVHYSGDSRHCVSGSLD-----G------KLIIWDTWTGNKTQ--VI-PLRSAWVMSVAFAQSGNFVACGGMD-NMCTV 1760 (2004)
Q Consensus 1696 tsLaFSPDG~~LASGS~D-----G------tIrVWDl~Tgk~l~--ti-~~Ht~~ItsLafSPdg~~LaSGS~D-GtIrV 1760 (2004)
...+...+|+.++.|+.+ + .+.+||..+++-.. .. ..+.....+.++.+++..++.|+.+ ..+.+
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~ 102 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 102 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence 344445688888888753 1 37799999875432 22 2233344567888999999998765 58999
Q ss_pred EEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecC------CeEEEEECCCCceeEEee--------ccc---
Q psy8748 1761 YDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGD------MKIVTWNLETGQRIHEVA--------QAH--- 1823 (2004)
Q Consensus 1761 WDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~D------GtI~IWDl~tg~~i~~il--------~~h--- 1823 (2004)
||..+.. ................+...++..++.|+.+ ..+.+||..+++....-. ..+
T Consensus 103 yd~~~~~----w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 178 (387)
T d1k3ia3 103 YDSSSDS----WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL 178 (387)
T ss_dssp EEGGGTE----EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred ecCccCc----ccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccce
Confidence 9987642 2222222222222233333355566666542 468999998876431100 000
Q ss_pred --cCCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEe--c----CC--CCeEEEEEe-CCCCEEEEEECCC----
Q psy8748 1824 --IGDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFF--G----HE--ADVNSVCFH-PSGLAFATGSEDK---- 1888 (2004)
Q Consensus 1824 --~~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~--~----h~--s~ItsIafS-Pdg~~LaSgS~DG---- 1888 (2004)
...-..+...++|+.++.++.++.+.++|..+........ . +. ..-.++.+. .+++.++.|+...
T Consensus 179 ~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~ 258 (387)
T d1k3ia3 179 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 258 (387)
T ss_dssp GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred eeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCC
Confidence 0011112334567777777777778888877665432211 0 01 111223332 3566666666421
Q ss_pred ----eEEEEEccCC---ceeEEEcC-CCCCCCeEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCeeeEEEc
Q psy8748 1889 ----TARLFDIRAD---QQIATYLP-PNKNSGFTSCAVSSSGRYIFCGSDD-----------NNVHVWDLLKTTHNGVLS 1949 (2004)
Q Consensus 1889 ----tIrIWDLrtg---k~i~t~~~-~~~~s~ItsLafSPdG~~LaSGSsD-----------GsIrIWDL~tge~l~tL~ 1949 (2004)
...+.+.... ........ ......-.+....++|+++++|+.+ .++.+||..+.+-...-.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~ 338 (387)
T d1k3ia3 259 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 338 (387)
T ss_dssp BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred cccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCC
Confidence 2333333221 11122111 1111223355666899999998853 147889987664322111
Q ss_pred cCCCC--eEEEEEcCCCCEEEEEEC
Q psy8748 1950 GHENR--VTSISLSPNGMALVTSSW 1972 (2004)
Q Consensus 1950 gHs~~--VtsLaFSPDg~~LaSgS~ 1972 (2004)
....+ -....+.+||+.++.||.
T Consensus 339 ~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 339 NSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCcccceEEEEECCCCEEEEEeCC
Confidence 11111 123345789999999884
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.19 E-value=0.012 Score=72.92 Aligned_cols=281 Identities=13% Similarity=0.089 Sum_probs=165.3
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEeeCCCC----------ce-EEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceE
Q psy8748 1706 HCVSGSLDGKLIIWDTWTGNKTQVIPLRSA----------WV-MSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1706 ~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~----------~I-tsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
.++.++.++.|.-+|.++|+.+..+..... .+ ..+.+. +..++.++.|+.+...|..+++...
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W---- 152 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVW---- 152 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE----
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeecccccccee----
Confidence 566777889999999999999988753210 11 122222 4466777788888888877664211
Q ss_pred EEEEe-cCccc--eeeeEEeCCCcEEEeec------CCeEEEEECCCCceeEEeeccc----------------------
Q psy8748 1775 IRELL-GYEGF--LSSCRFIDDTTLLTGSG------DMKIVTWNLETGQRIHEVAQAH---------------------- 1823 (2004)
Q Consensus 1775 i~sl~-gh~~~--Vssvafsdd~~LlSgS~------DGtI~IWDl~tg~~i~~il~~h---------------------- 1823 (2004)
..... ..... +......-++.+++++. .|.|.-+|.++|+.+.+.....
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~ 232 (573)
T d1kb0a2 153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (573)
T ss_dssp EEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCC
Confidence 11111 11111 11111112445555543 4789999999999886652211
Q ss_pred --------cCCe-EEEEECCCCCEEEEEECC-------------------CeEEEEECCCCeEEEEEecCCCC-------
Q psy8748 1824 --------IGDV-VSISLSPDGQYFVTGSVD-------------------KSCKLWDFREKKCVQTFFGHEAD------- 1868 (2004)
Q Consensus 1824 --------~~~I-tsLafSPdg~~LaSGS~D-------------------GsIrIWDlrs~k~I~tl~~h~s~------- 1868 (2004)
.+.+ ...+++++...++.+... ..|.-.|.++++....++.....
T Consensus 233 ~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~ 312 (573)
T d1kb0a2 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (573)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccccccc
Confidence 0111 235666766666654321 25777788888877666532222
Q ss_pred --eEEEEEeCCC---CEEEEEECCCeEEEEEccCCceeEEEcCCCC---------------------------------C
Q psy8748 1869 --VNSVCFHPSG---LAFATGSEDKTARLFDIRADQQIATYLPPNK---------------------------------N 1910 (2004)
Q Consensus 1869 --ItsIafSPdg---~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~---------------------------------~ 1910 (2004)
........++ ..++.++.+|.+.++|..+++.+........ .
T Consensus 313 ~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg 392 (573)
T d1kb0a2 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (573)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred ceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCC
Confidence 2222222333 3577788899999999999988765421110 0
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-------------------------------------------CeEEEEECCCCeeeEE
Q psy8748 1911 SGFTSCAVSSSGRYIFCGSDD-------------------------------------------NNVHVWDLLKTTHNGV 1947 (2004)
Q Consensus 1911 s~ItsLafSPdG~~LaSGSsD-------------------------------------------GsIrIWDL~tge~l~t 1947 (2004)
..-...+++|+...+++...+ |.+.-||+.+++.+..
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~ 472 (573)
T d1kb0a2 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (573)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred ccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEee
Confidence 011234677877766654322 3577788888888877
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEee
Q psy8748 1948 LSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVY 1993 (2004)
Q Consensus 1948 L~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~ 1993 (2004)
..... +..+=..+-.|.++++|+.||.++.||.++|+.+-..+.-
T Consensus 473 ~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~ 517 (573)
T d1kb0a2 473 VEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (573)
T ss_dssp EEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence 65322 1111122336778889999999999999999765545443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.12 E-value=0.043 Score=59.06 Aligned_cols=228 Identities=11% Similarity=0.074 Sum_probs=124.1
Q ss_pred EEecC--CCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEee-cC-----CeEEEEECC
Q psy8748 1741 AFAQS--GNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGS-GD-----MKIVTWNLE 1811 (2004)
Q Consensus 1741 afSPd--g~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS-~D-----GtI~IWDl~ 1811 (2004)
..+|+ |+.++..+ +|.|.+.++.+++ .+.+..+.+......|++++. ++... .+ +.|.+++..
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~-------~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~ 76 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS-------TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE 76 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCC-------EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCC-------EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec
Confidence 35788 98887765 4668888887542 344555667778888997665 44332 22 358888888
Q ss_pred CCceeEEee-----ccccCCeEEEEECCCCCEEEEEECC------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCE
Q psy8748 1812 TGQRIHEVA-----QAHIGDVVSISLSPDGQYFVTGSVD------KSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLA 1880 (2004)
Q Consensus 1812 tg~~i~~il-----~~h~~~ItsLafSPdg~~LaSGS~D------GsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~ 1880 (2004)
+++...-.. ...........|+|+|+.++..... ..+...+...+..... +........+.+.+..
T Consensus 77 ~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 153 (281)
T d1k32a2 77 NGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRV 153 (281)
T ss_dssp TTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEE
T ss_pred CCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeE
Confidence 776542211 1122345678999999998876432 2355566555543222 2222333333333333
Q ss_pred EEEEECCC-----------eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEE
Q psy8748 1881 FATGSEDK-----------TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD--NNVHVWDLLKTTHNGV 1947 (2004)
Q Consensus 1881 LaSgS~DG-----------tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD--GsIrIWDL~tge~l~t 1947 (2004)
++....+. ....+............ .........++++. .+.....+ ..|+++|+..++....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~l 229 (281)
T d1k32a2 154 IGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD---MSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKH 229 (281)
T ss_dssp EEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC---CSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEEC
T ss_pred EEeeccccceeeeeccCCcceeeeeccccceeeccC---Cccccceeeeeccc-cceecccccccceEEEeCCCCceEEe
Confidence 33332211 12222222222222221 11233444555542 23333333 4688888876654432
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q psy8748 1948 LSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIV 1986 (2004)
Q Consensus 1948 L~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l 1986 (2004)
.......+ ..|+|||+.|+... +|.|+++|+++++.
T Consensus 230 t~~~~~~~--~~~SpDG~~I~f~~-~~~l~~~d~~~g~~ 265 (281)
T d1k32a2 230 TSFTDYYP--RHLNTDGRRILFSK-GGSIYIFNPDTEKI 265 (281)
T ss_dssp CCCCSSCE--EEEEESSSCEEEEE-TTEEEEECTTTCCE
T ss_pred ecCCCccc--ccCcCCCCEEEEEe-CCEEEEEECCCCCE
Confidence 22222233 46899999887644 78899999998864
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.04 E-value=0.078 Score=65.49 Aligned_cols=282 Identities=13% Similarity=0.072 Sum_probs=162.2
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEeeCCC--------Cce-EEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEE
Q psy8748 1705 RHCVSGSLDGKLIIWDTWTGNKTQVIPLRS--------AWV-MSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVI 1775 (2004)
Q Consensus 1705 ~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht--------~~I-tsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i 1775 (2004)
..+.+++.++.|.-.|..+|+.+..+.... ..+ ..++.. +..++.++.++.+...|..+++... .
T Consensus 69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W----~ 142 (582)
T d1flga_ 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVW----K 142 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEE----E
T ss_pred CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceee----e
Confidence 466777888999999999999998874321 001 122332 4567778889988888887764211 1
Q ss_pred EEEecCcc--ce--eeeEEeC---CCcEEEe-------ecCCeEEEEECCCCceeEEeeccc------------------
Q psy8748 1776 RELLGYEG--FL--SSCRFID---DTTLLTG-------SGDMKIVTWNLETGQRIHEVAQAH------------------ 1823 (2004)
Q Consensus 1776 ~sl~gh~~--~V--ssvafsd---d~~LlSg-------S~DGtI~IWDl~tg~~i~~il~~h------------------ 1823 (2004)
.....+.. .. ......+ ...++.. +..+.|.-+|.++|+.+.+.....
T Consensus 143 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~ 222 (582)
T d1flga_ 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccc
Confidence 11111100 00 0011111 1222222 234678889999998776542110
Q ss_pred ---------------------cCCe-EEEEECCCCCEEEEEEC------------------------CCeEEEEECCCCe
Q psy8748 1824 ---------------------IGDV-VSISLSPDGQYFVTGSV------------------------DKSCKLWDFREKK 1857 (2004)
Q Consensus 1824 ---------------------~~~I-tsLafSPdg~~LaSGS~------------------------DGsIrIWDlrs~k 1857 (2004)
.+.+ ..+++++..++++.+.. ...|.-.|.++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~ 302 (582)
T d1flga_ 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchh
Confidence 1112 23677777777777652 1357778889998
Q ss_pred EEEEEecCCCCeE---------EEEEe-CCCC---EEEEEECCCeEEEEEccCCceeEEEcCCCC---------------
Q psy8748 1858 CVQTFFGHEADVN---------SVCFH-PSGL---AFATGSEDKTARLFDIRADQQIATYLPPNK--------------- 1909 (2004)
Q Consensus 1858 ~I~tl~~h~s~It---------sIafS-Pdg~---~LaSgS~DGtIrIWDLrtgk~i~t~~~~~~--------------- 1909 (2004)
....++.....+. -+.+. .++. .++.++.+|.+.++|..+++.+........
T Consensus 303 ~~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~ 382 (582)
T d1flga_ 303 VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred hhhcccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCccccccccccccccce
Confidence 8777654322211 11221 1332 466778899999999988876543211100
Q ss_pred ----------------------------CCCeEEEEEcCCCCEEEEEeC-------------------------------
Q psy8748 1910 ----------------------------NSGFTSCAVSSSGRYIFCGSD------------------------------- 1930 (2004)
Q Consensus 1910 ----------------------------~s~ItsLafSPdG~~LaSGSs------------------------------- 1930 (2004)
.......+++|+...+++...
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (582)
T d1flga_ 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred eccccccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccccccccccCcccccccc
Confidence 001112356665554444322
Q ss_pred --CCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEEee
Q psy8748 1931 --DNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTIVWKVLKVY 1993 (2004)
Q Consensus 1931 --DGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~l~k~Ik~~ 1993 (2004)
.|.|.-+|+.+++.......+. ++.+=..+..+.++++|+.||.++.||.++|+.+-..++.
T Consensus 463 ~~~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~ 526 (582)
T d1flga_ 463 DHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECC
Confidence 2568888888888887765432 2222123346778888999999999999999765555543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.96 E-value=0.23 Score=54.88 Aligned_cols=238 Identities=11% Similarity=0.023 Sum_probs=143.0
Q ss_pred CeEEEEECCCCc-----eEEEeeCCCCceEEEEEecCCCEEEEe-ecCCeEEEEEcCCCCCCCcceEEEEEecCccceee
Q psy8748 1714 GKLIIWDTWTGN-----KTQVIPLRSAWVMSVAFAQSGNFVACG-GMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSS 1787 (2004)
Q Consensus 1714 GtIrVWDl~Tgk-----~l~ti~~Ht~~ItsLafSPdg~~LaSG-S~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vss 1787 (2004)
+.|+-.+++... ....+..+...+.+++|+..++.++.. ..++.|+..+++... .. ......-..+..
T Consensus 10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~----~~--~v~~~~~~~p~~ 83 (263)
T d1npea_ 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE----PT--TIIRQDLGSPEG 83 (263)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----CE--EEECTTCCCEEE
T ss_pred CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC----cE--EEEEeccccccE
Confidence 466666654322 112233344557889999877766655 456778888886532 11 112222234566
Q ss_pred eEEe--CCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC---CeEEEEECCCCeEEEEE
Q psy8748 1788 CRFI--DDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD---KSCKLWDFREKKCVQTF 1862 (2004)
Q Consensus 1788 vafs--dd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D---GsIrIWDlrs~k~I~tl 1862 (2004)
+++. .+...++-...+.|.+.+++..... .+..........++++|...+++..... +.|.--++.........
T Consensus 84 iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~ 162 (263)
T d1npea_ 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA 162 (263)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE
T ss_pred EEEeccCCeEEEeccCCCEEEEEecCCceEE-EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee
Confidence 6664 3334455566789999998766543 3333444678999999987777655432 23555566544333333
Q ss_pred ecCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q psy8748 1863 FGHEADVNSVCFHPSGLAFATG-SEDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLL 1940 (2004)
Q Consensus 1863 ~~h~s~ItsIafSPdg~~LaSg-S~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~ 1940 (2004)
...-....++++.+.++.|+.+ ...+.|...|+............. ....+++. +.+|+..+ ..+.|...|..
T Consensus 163 ~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~--~~~lYwtd~~~~~I~~~~~~ 237 (263)
T d1npea_ 163 QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY--GKNLYYTDWKTNSVIAMDLA 237 (263)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred eecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE--CCEEEEEECCCCEEEEEECC
Confidence 3334567899999877777655 457789999987554433332212 23567765 45555554 56889999999
Q ss_pred CCeeeEEEc-cCCCCeEEEEEcCC
Q psy8748 1941 KTTHNGVLS-GHENRVTSISLSPN 1963 (2004)
Q Consensus 1941 tge~l~tL~-gHs~~VtsLaFSPD 1963 (2004)
+++....+. .......++++.++
T Consensus 238 ~g~~~~~~~~~~~~~~~gi~v~~~ 261 (263)
T d1npea_ 238 ISKEMDTFHPHKQTRLYGITIALS 261 (263)
T ss_dssp TTEEEEEECCSSCCCCCCEEEECS
T ss_pred CCccceEECCCCCCCcceEEEeCC
Confidence 898877664 33345556666543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.88 E-value=0.5 Score=52.11 Aligned_cols=235 Identities=9% Similarity=-0.012 Sum_probs=140.9
Q ss_pred EEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe-CCCcEE-EeecCCeEEEEECCCCceeEEeeccccC
Q psy8748 1748 FVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI-DDTTLL-TGSGDMKIVTWNLETGQRIHEVAQAHIG 1825 (2004)
Q Consensus 1748 ~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs-dd~~Ll-SgS~DGtI~IWDl~tg~~i~~il~~h~~ 1825 (2004)
+|+.+. .+.|+-.+++...... .........+...+..++|. .++.++ +-..++.|+..+++.+... .+......
T Consensus 3 fLl~s~-~~~I~~~~ld~~~~~~-~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~-~v~~~~~~ 79 (263)
T d1npea_ 3 HLLFAQ-TGKIERLPLERNTMKK-TEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TIIRQDLG 79 (263)
T ss_dssp EEEEEE-EEEEEEEEESSSCBCG-GGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEECTTCC
T ss_pred EEEEeC-CCeEEEEECCCccccc-cccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE-EEEEeccc
Confidence 444433 3467777775432211 11122222333456667776 334444 4456688999888765543 33334445
Q ss_pred CeEEEEECCCCCEEEEE-ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEEccCCcee
Q psy8748 1826 DVVSISLSPDGQYFVTG-SVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED---KTARLFDIRADQQI 1901 (2004)
Q Consensus 1826 ~ItsLafSPdg~~LaSG-S~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D---GtIrIWDLrtgk~i 1901 (2004)
.+.+++++.-++.|+.+ ...+.|.+.++............-..+..++++|...+++....+ +.|...++......
T Consensus 80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~ 159 (263)
T d1npea_ 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence 78899998766666555 456789999987655433333334678999999977776654332 23555566543333
Q ss_pred EEEcCCCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEE
Q psy8748 1902 ATYLPPNKNSGFTSCAVSSSGRYIFCGS-DDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTS-SWDQFVKVW 1979 (2004)
Q Consensus 1902 ~t~~~~~~~s~ItsLafSPdG~~LaSGS-sDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSg-S~DGtIrIW 1979 (2004)
... . ........+++++.++.|+..+ ..+.|...|+........+.+- ....++++. +..|+-. ...+.|...
T Consensus 160 ~i~-~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~--~~~lYwtd~~~~~I~~~ 234 (263)
T d1npea_ 160 ILA-Q-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY--GKNLYYTDWKTNSVIAM 234 (263)
T ss_dssp EEE-C-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred eee-e-ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC-CCcEEEEEE--CCEEEEEECCCCEEEEE
Confidence 222 2 2234568899998888776654 5688999998655544444443 335678885 3445444 456889999
Q ss_pred ECCCCeEEEEE
Q psy8748 1980 QESNTIVWKVL 1990 (2004)
Q Consensus 1980 dlstg~l~k~I 1990 (2004)
+..+++....+
T Consensus 235 ~~~~g~~~~~~ 245 (263)
T d1npea_ 235 DLAISKEMDTF 245 (263)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCccceEE
Confidence 99888654433
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.63 E-value=0.18 Score=59.57 Aligned_cols=270 Identities=13% Similarity=0.109 Sum_probs=159.8
Q ss_pred EEEEeCCCeEEEEECCCCceEEEeeCCC---------------------------------------Cce--EEEEEe--
Q psy8748 1707 CVSGSLDGKLIIWDTWTGNKTQVIPLRS---------------------------------------AWV--MSVAFA-- 1743 (2004)
Q Consensus 1707 LASGS~DGtIrVWDl~Tgk~l~ti~~Ht---------------------------------------~~I--tsLafS-- 1743 (2004)
+.+||..|.|+|+-+.+++.+..+...+ +.. -.+.+.
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 5678889999999998888887764210 011 123333
Q ss_pred -cCCCEEEEee-cCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe---CCCcEEEeecC----------------
Q psy8748 1744 -QSGNFVACGG-MDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI---DDTTLLTGSGD---------------- 1802 (2004)
Q Consensus 1744 -Pdg~~LaSGS-~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs---dd~~LlSgS~D---------------- 1802 (2004)
+||+++++.. .++.|.+.|++..+ ...+..+. ....+..+... ...+++.++..
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~fk----t~kIi~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~ 170 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDVMK----CDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN 170 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTE----EEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-
T ss_pred ccceeEEEEEcCCCceEEEEECccee----eeEEEecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhh
Confidence 2577777665 67889999997642 11122222 22233333322 23345554442
Q ss_pred --CeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECCC---------------eEEEEE-------------
Q psy8748 1803 --MKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVDK---------------SCKLWD------------- 1852 (2004)
Q Consensus 1803 --GtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~DG---------------sIrIWD------------- 1852 (2004)
+.+..+|..+.+...++.. .+....+.++++|+++++.+.+. .+.+++
T Consensus 171 y~~~~t~ID~~tm~V~~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~ 248 (459)
T d1fwxa2 171 YVNVFTAVDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 248 (459)
T ss_dssp EEEEEEEEETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred cceEEEEEecCCceEEEEeee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence 3467889998887766643 34567889999999999887432 233333
Q ss_pred ----------CCCC---eEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeE---------EEcCCCC
Q psy8748 1853 ----------FREK---KCVQTFFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIA---------TYLPPNK 1909 (2004)
Q Consensus 1853 ----------lrs~---k~I~tl~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~---------t~~~~~~ 1909 (2004)
.+.. ..+..+. -......+.++|||+++++++ -+.++.++|+++..... .......
T Consensus 249 ~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el 327 (459)
T d1fwxa2 249 QELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 327 (459)
T ss_dssp EEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred EEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence 2211 1111121 122345789999999987766 48899999986422110 0011122
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------eeeEEEccCCCCeEEE------EEcCCCCEEEEEEC-
Q psy8748 1910 NSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKT----------THNGVLSGHENRVTSI------SLSPNGMALVTSSW- 1972 (2004)
Q Consensus 1910 ~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tg----------e~l~tL~gHs~~VtsL------aFSPDg~~LaSgS~- 1972 (2004)
.-.-...+|+.+|+-..+---|..|.-|++... ..+..+.-|-. +-.+ ...|+|++|++...
T Consensus 328 glgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~nk~ 406 (459)
T d1fwxa2 328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLSKF 406 (459)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEESC
T ss_pred CcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccC-CCCCccCcCCcCCCCCCEEEEeccc
Confidence 334567789988865556667999999998432 34444443322 2222 23579999999863
Q ss_pred --CC----------eEEEEECCCCe
Q psy8748 1973 --DQ----------FVKVWQESNTI 1985 (2004)
Q Consensus 1973 --DG----------tIrIWdlstg~ 1985 (2004)
|+ .-++.|+.+.+
T Consensus 407 skdrfl~vgpl~pe~~qlidisg~~ 431 (459)
T d1fwxa2 407 SKDRFLNVGPLKPENDQLIDISGDK 431 (459)
T ss_dssp CTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ccccccCCCCCCCccceEEEcCCCe
Confidence 43 35688887654
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.55 E-value=0.12 Score=63.66 Aligned_cols=262 Identities=13% Similarity=0.074 Sum_probs=144.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCC----CceEEEEEecCCCEEEEee------cCCeEEEEEcCCCCCCCcce
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRS----AWVMSVAFAQSGNFVACGG------MDNMCTVYDLNNRDSTGAAK 1773 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht----~~ItsLafSPdg~~LaSGS------~DGtIrVWDl~t~~~~~~~k 1773 (2004)
+..++.++.||.+.-.|.++|+......... ..++.--.-. +..++.+. .+|.|+.+|..+++......
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-CCeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence 3457778889999999999999887764321 1111111111 33444444 36789999998875322111
Q ss_pred EEEEE-------------------------------ecCcccee-eeEEeC-CCcEEEeec----------------CCe
Q psy8748 1774 VIREL-------------------------------LGYEGFLS-SCRFID-DTTLLTGSG----------------DMK 1804 (2004)
Q Consensus 1774 ~i~sl-------------------------------~gh~~~Vs-svafsd-d~~LlSgS~----------------DGt 1804 (2004)
....- ......+. ...+.+ .+.++.+.. ...
T Consensus 194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~s 273 (571)
T d2ad6a1 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccc
Confidence 00000 00001111 112221 222333322 356
Q ss_pred EEEEECCCCceeEEeeccccC--------CeEEEEECCCCC---EEEEEECCCeEEEEECCCCeEEEEEecCC-------
Q psy8748 1805 IVTWNLETGQRIHEVAQAHIG--------DVVSISLSPDGQ---YFVTGSVDKSCKLWDFREKKCVQTFFGHE------- 1866 (2004)
Q Consensus 1805 I~IWDl~tg~~i~~il~~h~~--------~ItsLafSPdg~---~LaSGS~DGsIrIWDlrs~k~I~tl~~h~------- 1866 (2004)
+.-.|.++|+........|.. ......+..+++ .++.++.+|.++++|..+++.+.......
T Consensus 274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~ 353 (571)
T d2ad6a1 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK 353 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccc
Confidence 788899999987655432211 111222222343 46778899999999999998775432100
Q ss_pred ------------------------------CC--eEEEEEeCCCCEEEEEECC---------------------------
Q psy8748 1867 ------------------------------AD--VNSVCFHPSGLAFATGSED--------------------------- 1887 (2004)
Q Consensus 1867 ------------------------------s~--ItsIafSPdg~~LaSgS~D--------------------------- 1887 (2004)
+. -...+++|+...+++...+
T Consensus 354 ~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (571)
T d2ad6a1 354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP 433 (571)
T ss_dssp ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecc
Confidence 00 0124667766666554322
Q ss_pred ----------CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCC-CeE
Q psy8748 1888 ----------KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHEN-RVT 1956 (2004)
Q Consensus 1888 ----------GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~-~Vt 1956 (2004)
|.+.-+|+.+++...+...... ..+-.+...+.++++|+.||.++.+|.++|+.+..+.-... .-.
T Consensus 434 ~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~---~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~ 510 (571)
T d2ad6a1 434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS 510 (571)
T ss_dssp CTTSTTSCCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccCCcccCCcccEEEeccCCCceeeEcCCCCC---CCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceec
Confidence 4677888888888877643221 11111223577888999999999999999999988753211 111
Q ss_pred EEEEcCCCC-EEEE
Q psy8748 1957 SISLSPNGM-ALVT 1969 (2004)
Q Consensus 1957 sLaFSPDg~-~LaS 1969 (2004)
-+.|..||+ |+++
T Consensus 511 P~ty~~dGkqYi~v 524 (571)
T d2ad6a1 511 PMTYSFKGKQYIGS 524 (571)
T ss_dssp CEEEEETTEEEEEE
T ss_pred ceEEEECCEEEEEE
Confidence 244444775 4444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.89 Score=49.96 Aligned_cols=232 Identities=7% Similarity=-0.029 Sum_probs=137.2
Q ss_pred EEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeC-CCcEEEe-ecCCeEEEEECCCCc---eeEEeeccc
Q psy8748 1749 VACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFID-DTTLLTG-SGDMKIVTWNLETGQ---RIHEVAQAH 1823 (2004)
Q Consensus 1749 LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsd-d~~LlSg-S~DGtI~IWDl~tg~---~i~~il~~h 1823 (2004)
|+.+.. ..|+-.++++.. .. .+......+..+.|.. .+.++.. ...+.|...+++... .........
T Consensus 4 Ll~s~~-~~I~~~~l~~~~----~~---~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~ 75 (266)
T d1ijqa1 4 LFFTNR-HEVRKMTLDRSE----YT---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 75 (266)
T ss_dssp EEEECB-SSEEEEETTSCC----CE---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred EEEECC-CeEEEEECCCCc----ce---eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCC
Confidence 444433 347778886532 11 1222334456677763 3444443 456677776665322 111222333
Q ss_pred cCCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEEccCCce
Q psy8748 1824 IGDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGS--EDKTARLFDIRADQQ 1900 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS--~DGtIrIWDLrtgk~ 1900 (2004)
...+.++++.+.++.|+.+. ..+.|.+.++..................++++|...+++... ..+.|...++.....
T Consensus 76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~ 155 (266)
T d1ijqa1 76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 155 (266)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence 45577899987666666554 557899999987765555555567789999999665655443 345677777764433
Q ss_pred eEEEcCCCCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEE
Q psy8748 1901 IATYLPPNKNSGFTSCAVSSSGRYIFCG-SDDNNVHVWDLLKTTHNGVLSG--HENRVTSISLSPNGMALVTSSWDQFVK 1977 (2004)
Q Consensus 1901 i~t~~~~~~~s~ItsLafSPdG~~LaSG-SsDGsIrIWDL~tge~l~tL~g--Hs~~VtsLaFSPDg~~LaSgS~DGtIr 1977 (2004)
. .+.. ........+++++.++.|+.+ ...+.|...++........... ......++++. ++....+-..++.|.
T Consensus 156 ~-~l~~-~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~ 232 (266)
T d1ijqa1 156 Y-SLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (266)
T ss_dssp E-EEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred e-cccc-cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEE
Confidence 3 3322 223457889999987777666 4468899999865443333322 23456778876 333444445678888
Q ss_pred EEECCCCeEEEEEE
Q psy8748 1978 VWQESNTIVWKVLK 1991 (2004)
Q Consensus 1978 IWdlstg~l~k~Ik 1991 (2004)
..+..++.....+.
T Consensus 233 ~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 233 SANRLTGSDVNLLA 246 (266)
T ss_dssp EEETTTCCCCEEEE
T ss_pred EEECCCCcceEEEE
Confidence 88887776545444
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.41 E-value=0.19 Score=61.69 Aligned_cols=263 Identities=16% Similarity=0.149 Sum_probs=145.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCc-eEEEEEec--CCCEEEEee------cCCeEEEEEcCCCCCCCcceE
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAW-VMSVAFAQ--SGNFVACGG------MDNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~-ItsLafSP--dg~~LaSGS------~DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
+..++.+..||.+.-.|..+|+.+......... -..+.-.| .+..++.+. ..|.|..+|..+++.......
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence 346778888999999999999998877543210 00000011 133444433 236788888887653322211
Q ss_pred EEEEec------------------------Ccccee-eeEEeCC-CcEEEeec-------------------CCeEEEEE
Q psy8748 1775 IRELLG------------------------YEGFLS-SCRFIDD-TTLLTGSG-------------------DMKIVTWN 1809 (2004)
Q Consensus 1775 i~sl~g------------------------h~~~Vs-svafsdd-~~LlSgS~-------------------DGtI~IWD 1809 (2004)
...... ....+. ...+.+. +.++.+.. ...|.-.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld 276 (560)
T d1kv9a2 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (560)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence 100000 011111 1122222 22222211 24577778
Q ss_pred CCCCceeEEeeccccC--------CeEEEEECCCC---CEEEEEECCCeEEEEECCCCeEEEEEecCCC-----------
Q psy8748 1810 LETGQRIHEVAQAHIG--------DVVSISLSPDG---QYFVTGSVDKSCKLWDFREKKCVQTFFGHEA----------- 1867 (2004)
Q Consensus 1810 l~tg~~i~~il~~h~~--------~ItsLafSPdg---~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s----------- 1867 (2004)
+++++........+.+ ...-..+..++ ..++.++.+|.++++|..+++.+........
T Consensus 277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~ 356 (560)
T d1kv9a2 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (560)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence 8888876554322211 11111222233 3567788999999999999987755421100
Q ss_pred -------------------------CeEEEEEeCCCCEEEEEEC------------------------------------
Q psy8748 1868 -------------------------DVNSVCFHPSGLAFATGSE------------------------------------ 1886 (2004)
Q Consensus 1868 -------------------------~ItsIafSPdg~~LaSgS~------------------------------------ 1886 (2004)
.-...+++|+...+++...
T Consensus 357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (560)
T d1kv9a2 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (560)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence 0013456776666665432
Q ss_pred CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCCe-EEEEEcCCCC
Q psy8748 1887 DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRV-TSISLSPNGM 1965 (2004)
Q Consensus 1887 DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~V-tsLaFSPDg~ 1965 (2004)
.|.+.-||+.+++........... ..-.+.-.|.++++|+.||.++.+|..+|+.+..+.-..... .-+.+..+|+
T Consensus 437 ~G~l~A~D~~tGk~~W~~~~~~~~---~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGk 513 (560)
T d1kv9a2 437 SGALLAWDPVKQKAAWKVPYPTHW---NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR 513 (560)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSC---CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred ccceEEEeCCCCeEeeeccCCCCC---CCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 256888999999998877443321 112234457888999999999999999999998886322111 1134445775
Q ss_pred -EEEE
Q psy8748 1966 -ALVT 1969 (2004)
Q Consensus 1966 -~LaS 1969 (2004)
||+.
T Consensus 514 qyv~v 518 (560)
T d1kv9a2 514 QYVAI 518 (560)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 4444
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.32 E-value=0.27 Score=60.73 Aligned_cols=259 Identities=14% Similarity=0.103 Sum_probs=146.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEeeCCCCce-EEEEEec--CCCEEEEeec------CCeEEEEEcCCCCCCCcceE
Q psy8748 1704 SRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWV-MSVAFAQ--SGNFVACGGM------DNMCTVYDLNNRDSTGAAKV 1774 (2004)
Q Consensus 1704 G~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~I-tsLafSP--dg~~LaSGS~------DGtIrVWDl~t~~~~~~~k~ 1774 (2004)
+.+++.++.|+.|.-.|.++|+.+..+....... ..+.-.| -+..+++|.. .|.|+.+|..+++.......
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t 200 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence 4478888899999999999999998875321100 0011011 1455555543 48999999988753322111
Q ss_pred EEEE--------------------------ec-----Cccce-eeeEEe-CCCcEEEeec----------------CCeE
Q psy8748 1775 IREL--------------------------LG-----YEGFL-SSCRFI-DDTTLLTGSG----------------DMKI 1805 (2004)
Q Consensus 1775 i~sl--------------------------~g-----h~~~V-ssvafs-dd~~LlSgS~----------------DGtI 1805 (2004)
.... .+ ....+ ....+. ..+.++.+.. ...|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~si 280 (596)
T d1w6sa_ 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (596)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccc
Confidence 0000 00 00011 111222 1223333322 2458
Q ss_pred EEEECCCCceeEEeecccc--------CCeEEEE-ECCCCC---EEEEEECCCeEEEEECCCCeEEEEEecCC-------
Q psy8748 1806 VTWNLETGQRIHEVAQAHI--------GDVVSIS-LSPDGQ---YFVTGSVDKSCKLWDFREKKCVQTFFGHE------- 1866 (2004)
Q Consensus 1806 ~IWDl~tg~~i~~il~~h~--------~~ItsLa-fSPdg~---~LaSGS~DGsIrIWDlrs~k~I~tl~~h~------- 1866 (2004)
.-.|.++|+........|. .....+. ...+|+ .++.++.+|.+.++|..+++.+.......
T Consensus 281 vAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~ 360 (596)
T d1w6sa_ 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (596)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred cccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccccc
Confidence 8889999998765533322 1122222 123443 67778899999999999998775432100
Q ss_pred ------CC--------------------------eEEEEEeCCCCEEEEEEC----------------------------
Q psy8748 1867 ------AD--------------------------VNSVCFHPSGLAFATGSE---------------------------- 1886 (2004)
Q Consensus 1867 ------s~--------------------------ItsIafSPdg~~LaSgS~---------------------------- 1886 (2004)
.+ -...+++|+..+++....
T Consensus 361 ~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (596)
T d1w6sa_ 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (596)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccccccc
Confidence 00 012355665555444321
Q ss_pred -----------CCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEcc----C
Q psy8748 1887 -----------DKTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSG----H 1951 (2004)
Q Consensus 1887 -----------DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~g----H 1951 (2004)
-|.|.-||..+++.......... ...-.++..|.++++|+.||.++.+|.++|+.+..+.. +
T Consensus 441 ~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~---~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~ 517 (596)
T d1w6sa_ 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA---VWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAI 517 (596)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CcccCcccCCCcceEEEEeCCCCceecccCCCCC---CccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcc
Confidence 14688888888888776532221 11112234678888999999999999999999988853 2
Q ss_pred CCCeEEEEEcCCCC-EEE
Q psy8748 1952 ENRVTSISLSPNGM-ALV 1968 (2004)
Q Consensus 1952 s~~VtsLaFSPDg~-~La 1968 (2004)
..+++ |..||+ |++
T Consensus 518 a~P~t---Y~~dGkQYva 532 (596)
T d1w6sa_ 518 GYPMT---YTHKGTQYVA 532 (596)
T ss_dssp SCCEE---EEETTEEEEE
T ss_pred cCCeE---EEECCEEEEE
Confidence 33433 444665 444
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.30 E-value=0.3 Score=57.64 Aligned_cols=186 Identities=11% Similarity=0.112 Sum_probs=118.7
Q ss_pred CcEEE-eecCCeEEEEECCCCceeEEeeccccCCeEEEEECC--CCCEEEEEECCC------------------eEEEEE
Q psy8748 1794 TTLLT-GSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSP--DGQYFVTGSVDK------------------SCKLWD 1852 (2004)
Q Consensus 1794 ~~LlS-gS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSP--dg~~LaSGS~DG------------------sIrIWD 1852 (2004)
.++++ -..++.|.+.|+++.+....+.......+..+...+ +..+++.++.+. .+.++|
T Consensus 100 rylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID 179 (459)
T d1fwxa2 100 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD 179 (459)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEE
T ss_pred eEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEe
Confidence 34444 446789999999998876544334555677777755 455777777632 367889
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC---------------eEEEEEc----------------------
Q psy8748 1853 FREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDK---------------TARLFDI---------------------- 1895 (2004)
Q Consensus 1853 lrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DG---------------tIrIWDL---------------------- 1895 (2004)
..+.+....+.- ......+.++++|+++++.+.+. .+.+++.
T Consensus 180 ~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD 258 (459)
T d1fwxa2 180 ADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD 258 (459)
T ss_dssp TTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE
T ss_pred cCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeec
Confidence 988887666543 34567899999999999887542 2344443
Q ss_pred -cC--CceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeee-----------EEEccCCCCeEEEEE
Q psy8748 1896 -RA--DQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSD-DNNVHVWDLLKTTHN-----------GVLSGHENRVTSISL 1960 (2004)
Q Consensus 1896 -rt--gk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSs-DGsIrIWDL~tge~l-----------~tL~gHs~~VtsLaF 1960 (2004)
++ +.....+.+. ......+.++|||+++++++. +.++.|+|+++.... ..-....-.-...+|
T Consensus 259 ~~~~~~~~v~~yIPV--pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~f 336 (459)
T d1fwxa2 259 GRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF 336 (459)
T ss_dssp CSGG--CSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEE
T ss_pred ccccCCcceeEEEec--CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccccc
Confidence 21 1111111000 112346799999999987765 789999998642111 000112334567789
Q ss_pred cCCCCEEEEEECCCeEEEEECC
Q psy8748 1961 SPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1961 SPDg~~LaSgS~DGtIrIWdls 1982 (2004)
+..|....|.--|..|.-|++.
T Consensus 337 d~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 337 DGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp CTTSEEEEEETTTTEEEEEEHH
T ss_pred CCCceEEEEeeccceEEEEecc
Confidence 8888666666679999999985
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.09 E-value=0.37 Score=59.10 Aligned_cols=175 Identities=10% Similarity=0.077 Sum_probs=104.6
Q ss_pred eEEEEECCCCceeEEeeccc--------cCCeEEEEECCCC---CEEEEEECCCeEEEEECCCCeEEEEEecCCC-----
Q psy8748 1804 KIVTWNLETGQRIHEVAQAH--------IGDVVSISLSPDG---QYFVTGSVDKSCKLWDFREKKCVQTFFGHEA----- 1867 (2004)
Q Consensus 1804 tI~IWDl~tg~~i~~il~~h--------~~~ItsLafSPdg---~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s----- 1867 (2004)
.|.-.|.++++........+ ..+........++ ..++.++.+|.++++|..+++.+........
T Consensus 284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~ 363 (573)
T d1kb0a2 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (573)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence 46667777777654432211 1111222222233 3577788999999999999987765432110
Q ss_pred ------------------------------CeEEEEEeCCCCEEEEEECC------------------------------
Q psy8748 1868 ------------------------------DVNSVCFHPSGLAFATGSED------------------------------ 1887 (2004)
Q Consensus 1868 ------------------------------~ItsIafSPdg~~LaSgS~D------------------------------ 1887 (2004)
.-..++++|+...++....+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 443 (573)
T d1kb0a2 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (573)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccc
Confidence 01124677766665553222
Q ss_pred -------------CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccC---
Q psy8748 1888 -------------KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGH--- 1951 (2004)
Q Consensus 1888 -------------GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gH--- 1951 (2004)
|.+.-||+.+++.+........ ...-..+..|.++++|+.||.++.+|.++|+.+..+.-.
T Consensus 444 ~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p---~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~ 520 (573)
T d1kb0a2 444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP---WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGV 520 (573)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred cccccCCCCCCCcccEEEeCCCCCceEeeecCCCC---CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCc
Confidence 3577788888888877643321 111123346889999999999999999999999887532
Q ss_pred -CCCeEEEEEcCCCC-EEEEEEC----------------CCeEEEEECCCC
Q psy8748 1952 -ENRVTSISLSPNGM-ALVTSSW----------------DQFVKVWQESNT 1984 (2004)
Q Consensus 1952 -s~~VtsLaFSPDg~-~LaSgS~----------------DGtIrIWdlstg 1984 (2004)
..+ +.|..+|+ |++..+. .+.|.+|.+++.
T Consensus 521 ~~~P---~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~ 568 (573)
T d1kb0a2 521 VAAP---STYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGK 568 (573)
T ss_dssp CSCC---EEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCB
T ss_pred cccC---EEEEECCEEEEEEEeCCCcccccccccccCCCCCEEEEEEeCCc
Confidence 233 34445776 3333221 235777777654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.08 E-value=0.3 Score=55.30 Aligned_cols=254 Identities=11% Similarity=0.122 Sum_probs=132.5
Q ss_pred eEEEEEecCCCEEEEeecCC-----------eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCc-EEEeecC-C
Q psy8748 1737 VMSVAFAQSGNFVACGGMDN-----------MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTT-LLTGSGD-M 1803 (2004)
Q Consensus 1737 ItsLafSPdg~~LaSGS~DG-----------tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~-LlSgS~D-G 1803 (2004)
+...+...+|+.++.|+.+. .+.+||..++.-.. .......+........+..++. ++.|+.+ .
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~---~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~ 98 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD---RTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK 98 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC---CEEEECSCCCSSCEEEECTTSCEEEECSSSTT
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEee---cCCCCCCcccceeEEEEecCCcEEEeecCCCc
Confidence 33444455677777776421 36789987653211 1111222333333444555545 4455443 5
Q ss_pred eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC------CeEEEEECCCCeEEEEEec---------CC--
Q psy8748 1804 KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD------KSCKLWDFREKKCVQTFFG---------HE-- 1866 (2004)
Q Consensus 1804 tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D------GsIrIWDlrs~k~I~tl~~---------h~-- 1866 (2004)
.+.+||..+......-.......-.+.+..+||+.++.|+.+ ..+.+||..+.+-...-.. +.
T Consensus 99 ~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 178 (387)
T d1k3ia3 99 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL 178 (387)
T ss_dssp CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred ceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccce
Confidence 899999988765422111122223456777899999988753 3689999987753221100 00
Q ss_pred ---CCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcCCC------CCCCeEEEEE-cCCCCEEEEEeCCC----
Q psy8748 1867 ---ADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLPPN------KNSGFTSCAV-SSSGRYIFCGSDDN---- 1932 (2004)
Q Consensus 1867 ---s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~~~------~~s~ItsLaf-SPdG~~LaSGSsDG---- 1932 (2004)
..-..+...++|+.++.++.++.+.++|..+........... ....-.++.+ ..+++.++.|+...
T Consensus 179 ~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~ 258 (387)
T d1k3ia3 179 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 258 (387)
T ss_dssp GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred eeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCC
Confidence 001112334567777777777777777776654432211100 0011122223 34677777776421
Q ss_pred ----eEEEEECCCCe---eeEEEcc---CCCCeEEEEEcCCCCEEEEEECCC-----------eEEEEECCCCeEEEEEE
Q psy8748 1933 ----NVHVWDLLKTT---HNGVLSG---HENRVTSISLSPNGMALVTSSWDQ-----------FVKVWQESNTIVWKVLK 1991 (2004)
Q Consensus 1933 ----sIrIWDL~tge---~l~tL~g---Hs~~VtsLaFSPDg~~LaSgS~DG-----------tIrIWdlstg~l~k~Ik 1991 (2004)
...+.++.... ....... +...-.+....+||++++.||.++ .+.+||..++ .|..+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~-~W~~~~ 337 (387)
T d1k3ia3 259 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD-TFYKQN 337 (387)
T ss_dssp BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT-EEEECC
T ss_pred cccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCC-eEEECC
Confidence 23444432211 1111110 111223455568999999988531 4789999887 487775
Q ss_pred eec
Q psy8748 1992 VYN 1994 (2004)
Q Consensus 1992 ~~~ 1994 (2004)
...
T Consensus 338 ~~~ 340 (387)
T d1k3ia3 338 PNS 340 (387)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.94 E-value=1.5 Score=51.19 Aligned_cols=203 Identities=12% Similarity=0.156 Sum_probs=106.8
Q ss_pred EEEEeCCCCEEEEEeCC----------------CeEEEEECCCCce--EEEeeCC--CCceEEEEEecCCCEEEEee---
Q psy8748 1697 SVHYSGDSRHCVSGSLD----------------GKLIIWDTWTGNK--TQVIPLR--SAWVMSVAFAQSGNFVACGG--- 1753 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~D----------------GtIrVWDl~Tgk~--l~ti~~H--t~~ItsLafSPdg~~LaSGS--- 1753 (2004)
.++|++|++.|+-...| ..|..|.+.+... ...+... ...+..+..+.++++++...
T Consensus 175 ~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~ 254 (430)
T d1qfma1 175 CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG 254 (430)
T ss_dssp CEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS
T ss_pred ceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeecc
Confidence 57788888866543322 3577787776532 2333332 34566778889999876543
Q ss_pred cCCeEEEE--EcCCCCCC--CcceEEEEEecCccceeeeEEeCCCcEEE-ee---cCCeEEEEECCCCce--eEEeeccc
Q psy8748 1754 MDNMCTVY--DLNNRDST--GAAKVIRELLGYEGFLSSCRFIDDTTLLT-GS---GDMKIVTWNLETGQR--IHEVAQAH 1823 (2004)
Q Consensus 1754 ~DGtIrVW--Dl~t~~~~--~~~k~i~sl~gh~~~Vssvafsdd~~LlS-gS---~DGtI~IWDl~tg~~--i~~il~~h 1823 (2004)
.++...+| +....... ..................+.. .++.++. .. .++.|...++..... ...+...+
T Consensus 255 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~ 333 (430)
T d1qfma1 255 CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH 333 (430)
T ss_dssp SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCC
T ss_pred CCccEEEEEeeCCCcccccccccceeEeecccccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEeccc
Confidence 23344455 43322111 111111222222222222222 3333333 22 347788888775432 12333344
Q ss_pred cCCeEEEEECCCCCEEEEEE-CCC--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC----CeEEEEEcc
Q psy8748 1824 IGDVVSISLSPDGQYFVTGS-VDK--SCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSED----KTARLFDIR 1896 (2004)
Q Consensus 1824 ~~~ItsLafSPdg~~LaSGS-~DG--sIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~D----GtIrIWDLr 1896 (2004)
...+..-.+...+++|+... .+| .|++++..++..........+.+..+...++...+...-.+ .++.-||+.
T Consensus 334 ~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~ 413 (430)
T d1qfma1 334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (430)
T ss_dssp SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred CcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECC
Confidence 44454434444455666554 454 48899998887665554445556555555555544433322 678889998
Q ss_pred CCce
Q psy8748 1897 ADQQ 1900 (2004)
Q Consensus 1897 tgk~ 1900 (2004)
+++.
T Consensus 414 t~~~ 417 (430)
T d1qfma1 414 KEEL 417 (430)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 8754
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.42 E-value=1.4 Score=51.53 Aligned_cols=247 Identities=13% Similarity=0.073 Sum_probs=126.4
Q ss_pred ccccceeEEEEeCCCCEEEEE-eCC----CeEEEEECCCCceEEE-eeCCCCceEEEEEecCCCEEEEeecC--------
Q psy8748 1690 GHINKVNSVHYSGDSRHCVSG-SLD----GKLIIWDTWTGNKTQV-IPLRSAWVMSVAFAQSGNFVACGGMD-------- 1755 (2004)
Q Consensus 1690 GHt~~VtsLaFSPDG~~LASG-S~D----GtIrVWDl~Tgk~l~t-i~~Ht~~ItsLafSPdg~~LaSGS~D-------- 1755 (2004)
++.-.+..+++|||++++|.+ +.+ ..++++|+.+|+.+.. +.. .....++|.+|++.|+....+
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~ 199 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccc
Confidence 344445677889999988743 223 4699999999987642 221 112468899999977654322
Q ss_pred --------CeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCC-cEEEee---cCCe--EEEEECCCCce------
Q psy8748 1756 --------NMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDT-TLLTGS---GDMK--IVTWNLETGQR------ 1815 (2004)
Q Consensus 1756 --------GtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~-~LlSgS---~DGt--I~IWDl~tg~~------ 1815 (2004)
..|..|.+.+... .-..+.........+..+..+.++ .++... .++. +.+.|......
T Consensus 200 ~~~~~~~~~~v~~h~lgt~~~--~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 277 (430)
T d1qfma1 200 TETSTNLHQKLYYHVLGTDQS--EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (430)
T ss_dssp SCCCCCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred cccccCCcceEEEEECCCCcc--ccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccc
Confidence 2567777655321 111222111122234444445443 333221 2233 44445433211
Q ss_pred -eEEeeccccCCeEEEEECCCCCEEEEEE----CCCeEEEEECCCCeE---EEEEecCCCCeEEEEEeCCCCEEEEEE-C
Q psy8748 1816 -IHEVAQAHIGDVVSISLSPDGQYFVTGS----VDKSCKLWDFREKKC---VQTFFGHEADVNSVCFHPSGLAFATGS-E 1886 (2004)
Q Consensus 1816 -i~~il~~h~~~ItsLafSPdg~~LaSGS----~DGsIrIWDlrs~k~---I~tl~~h~s~ItsIafSPdg~~LaSgS-~ 1886 (2004)
.............-+ .+ +|..++.-+ .++.|...++..... ...+..+...+..-.+...+.+++... .
T Consensus 278 ~~~~~~~~~~~~~~~~-~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~ 355 (430)
T d1qfma1 278 KWVKLIDNFEGEYDYV-TN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (430)
T ss_dssp CCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred ceeEeecccccceEEE-ec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEc
Confidence 111222222222222 22 233333333 235677777664321 222333444454444444455665544 5
Q ss_pred CC--eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCee
Q psy8748 1887 DK--TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD----NNVHVWDLLKTTH 1944 (2004)
Q Consensus 1887 DG--tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD----GsIrIWDL~tge~ 1944 (2004)
++ .|++++..++........+ .+.+..+...++...+...-.+ .+++-||+.+++.
T Consensus 356 ~~~~~l~v~~~~~~~~~~~~~~~--~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 356 DVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp TTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred CCEeEEEEEECCCCcEEEecCCC--CceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 54 4889999887765554322 2445555555555554443332 6788999988754
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.98 E-value=1.9 Score=52.57 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=53.0
Q ss_pred CeEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEccCCCC-eEEEEEcCCCC-
Q psy8748 1888 KTARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLLKTTHNGVLSGHENR-VTSISLSPNGM- 1965 (2004)
Q Consensus 1888 GtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~-VtsLaFSPDg~- 1965 (2004)
|.|.-+|+.+++.......... +..-.++..|.++++|+.||.++.+|.++|+.+..++-.... -.-+.|..+|+
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p---~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLP---LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSC---CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CeEEEEcCCCCcEEeecCCCCC---CccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 5688889999988877743221 121123456788889999999999999999999888632211 11145556775
Q ss_pred EEEE
Q psy8748 1966 ALVT 1969 (2004)
Q Consensus 1966 ~LaS 1969 (2004)
|++.
T Consensus 543 Yv~i 546 (582)
T d1flga_ 543 YLGV 546 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.95 E-value=6.4 Score=44.11 Aligned_cols=226 Identities=12% Similarity=0.065 Sum_probs=131.1
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEEEcCCCCCCCcceEEE
Q psy8748 1697 SVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIR 1776 (2004)
Q Consensus 1697 sLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~ 1776 (2004)
+.-.+|..+.||.-+ ..++.|+|+++.+++..+.... .|.--.|-. .+.|+..+ +..|+-|+++... .+.+
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis-~~~L~lVT-~taVYHW~~~g~s-----~P~k 137 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS-LNTVALVT-DNAVYHWSMEGES-----QPVK 137 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESS-SSEEEEEC-SSEEEEEESSSSC-----CCEE
T ss_pred hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecC-CCEEEEEc-CCceEEEcccCCC-----Cchh
Confidence 445568888777655 5689999999999998887555 465667764 34444444 3569999996432 2233
Q ss_pred EEecCccc--eeeeEE--eCC-CcE-EEe--e----cCCeEEEEECCCCceeEEeeccccCCeEEEEECCCC---CEEEE
Q psy8748 1777 ELLGYEGF--LSSCRF--IDD-TTL-LTG--S----GDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDG---QYFVT 1841 (2004)
Q Consensus 1777 sl~gh~~~--Vssvaf--sdd-~~L-lSg--S----~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg---~~LaS 1841 (2004)
.+..|..- ..-+.| .++ ..+ ++| . -.|.+.+|..+.+.. +.+.+|.+....+.+.-+. +.|+.
T Consensus 138 ~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s--Q~ieGhaa~F~~~~~~g~~~~~~lf~f 215 (327)
T d1utca2 138 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIEGHAASFAQFKMEGNAEESTLFCF 215 (327)
T ss_dssp EEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE--EEECCSEEEEEEECCTTCSSCEEEEEE
T ss_pred hhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC--ccccceeeeeEEEEcCCCCCCceEEEE
Confidence 33333221 111222 222 222 221 1 237788999876543 4456666554444443211 23333
Q ss_pred EE---CCCeEEEEECCCCe---------EEEEEec---CCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEEcC
Q psy8748 1842 GS---VDKSCKLWDFREKK---------CVQTFFG---HEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATYLP 1906 (2004)
Q Consensus 1842 GS---~DGsIrIWDlrs~k---------~I~tl~~---h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~~~ 1906 (2004)
+. ..+.++|.++.... .+..+.. ..+-..++..++.-..++.-+.-|.+++||+.++.++..-..
T Consensus 216 a~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRI 295 (327)
T d1utca2 216 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 295 (327)
T ss_dssp EEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeec
Confidence 22 23578888876421 1111111 234466888888888899999999999999999999877643
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q psy8748 1907 PNKNSGFTSCAVSSSGRYIFCGSDDNNVH 1935 (2004)
Q Consensus 1907 ~~~~s~ItsLafSPdG~~LaSGSsDGsIr 1935 (2004)
.. ..|...+-+.+..=+++...+|.|.
T Consensus 296 s~--~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 296 SG--ETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp CS--SCEEEEEEETTTTEEEEEETTSEEE
T ss_pred CC--CceEEeccCCCCceEEEECCCCeEE
Confidence 33 3344344444433444444666554
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=1.9 Score=46.28 Aligned_cols=226 Identities=13% Similarity=0.069 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeec---------CCeEEEEECCCCceeEEeeccc-cCC
Q psy8748 1757 MCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSG---------DMKIVTWNLETGQRIHEVAQAH-IGD 1826 (2004)
Q Consensus 1757 tIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~---------DGtI~IWDl~tg~~i~~il~~h-~~~ 1826 (2004)
.+.+||+.+.. ...+..+...... ..+...++..++.|+. -..+.+||..+......-.... ...
T Consensus 20 ~~~~yd~~t~~----W~~~~~~p~~R~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~ 94 (288)
T d1zgka1 20 YLEAYNPSNGT----WLRLADLQVPRSG-LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR 94 (288)
T ss_dssp CEEEEETTTTE----EEECCCCSSCCBS-CEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT
T ss_pred eEEEEECCCCe----EEECCCCCCccce-eEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecc
Confidence 57788887642 1222112111111 2223334555555553 1357788887765442111011 111
Q ss_pred eEEEEECCCCCEEEEEECCCe-----EEEEECCCCeEEEEEecCCC-CeEEEEEeCCCCEEEEEECC-----CeEEEEEc
Q psy8748 1827 VVSISLSPDGQYFVTGSVDKS-----CKLWDFREKKCVQTFFGHEA-DVNSVCFHPSGLAFATGSED-----KTARLFDI 1895 (2004)
Q Consensus 1827 ItsLafSPdg~~LaSGS~DGs-----IrIWDlrs~k~I~tl~~h~s-~ItsIafSPdg~~LaSgS~D-----GtIrIWDL 1895 (2004)
-.+..+ +++.++.|+.++. ...+|..+......-..... .-.+.... ++..++.|+.+ ..+..||.
T Consensus 95 ~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~ 171 (288)
T d1zgka1 95 IGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYP 171 (288)
T ss_dssp CEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEET
T ss_pred eecccc--ceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeec
Confidence 122222 4555555554432 45567666543221111111 11122222 34455555543 34788887
Q ss_pred cCCceeEEEcCCCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEE
Q psy8748 1896 RADQQIATYLPPNKNSGFTSCAVSSSGRYIFCGSDD-----NNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTS 1970 (2004)
Q Consensus 1896 rtgk~i~t~~~~~~~s~ItsLafSPdG~~LaSGSsD-----GsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSg 1970 (2004)
.+++....-..... ....+... .++++++.|+.+ .....+|..+.+....-.....+...-+...++++++.|
T Consensus 172 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~G 249 (288)
T d1zgka1 172 ERNEWRMITAMNTI-RSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLG 249 (288)
T ss_dssp TTTEEEECCCCSSC-CBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred cccccccccccccc-cccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEe
Confidence 76544322211111 11122222 245666666544 356778876655433222111222111122367888888
Q ss_pred ECCC-----eEEEEECCCCeEEEEEEee
Q psy8748 1971 SWDQ-----FVKVWQESNTIVWKVLKVY 1993 (2004)
Q Consensus 1971 S~DG-----tIrIWdlstg~l~k~Ik~~ 1993 (2004)
|.++ .|.+||+.++ .|..+..+
T Consensus 250 G~~~~~~~~~v~~yd~~~~-~W~~~~~~ 276 (288)
T d1zgka1 250 GYDGHTFLDSVECYDPDTD-TWSEVTRM 276 (288)
T ss_dssp CBCSSCBCCEEEEEETTTT-EEEEEEEC
T ss_pred cCCCCeecceEEEEECCCC-EEEECCCC
Confidence 7654 3889999987 48888755
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.06 E-value=8.1 Score=43.65 Aligned_cols=186 Identities=10% Similarity=0.144 Sum_probs=101.3
Q ss_pred ceeEEEEeCCCCEEEEEeC------------CCeEEEEECCCCceEE-Ee--eCC-----CCceEEEEE--ecCCC-EEE
Q psy8748 1694 KVNSVHYSGDSRHCVSGSL------------DGKLIIWDTWTGNKTQ-VI--PLR-----SAWVMSVAF--AQSGN-FVA 1750 (2004)
Q Consensus 1694 ~VtsLaFSPDG~~LASGS~------------DGtIrVWDl~Tgk~l~-ti--~~H-----t~~ItsLaf--SPdg~-~La 1750 (2004)
+--+|+..|+|..+++++. .|.|.++|+.+.+... .+ .+. .-....+.. ..+|. +|+
T Consensus 36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~ 115 (340)
T d1v04a_ 36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 115 (340)
T ss_dssp CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence 4557888999987776642 3899999987654322 22 111 012345544 33454 344
Q ss_pred Ee---ecCCeEEEEEcCCCCCCCcceEEEEEecC-ccceeeeEEeCCCcEEEee------------------cCCeEEEE
Q psy8748 1751 CG---GMDNMCTVYDLNNRDSTGAAKVIRELLGY-EGFLSSCRFIDDTTLLTGS------------------GDMKIVTW 1808 (2004)
Q Consensus 1751 SG---S~DGtIrVWDl~t~~~~~~~k~i~sl~gh-~~~Vssvafsdd~~LlSgS------------------~DGtI~IW 1808 (2004)
+. ....+|.+|++.... ............ ......+...+++.+++.. ..|.+..|
T Consensus 116 vvnH~~~~~~ieif~~~~~~--~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~ 193 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEE--KSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 193 (340)
T ss_dssp EEECSTTCCEEEEEEEETTT--TEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEeccCCCceeEEEEEeCCC--CeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence 43 245678888886542 122333333222 2334556555444444432 12344445
Q ss_pred ECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE-CCCeEEEEECCCCeEEEE--EecCCCCeEEEEEeCCCCEEEEEE
Q psy8748 1809 NLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS-VDKSCKLWDFREKKCVQT--FFGHEADVNSVCFHPSGLAFATGS 1885 (2004)
Q Consensus 1809 Dl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS-~DGsIrIWDlrs~k~I~t--l~~h~s~ItsIafSPdg~~LaSgS 1885 (2004)
|. +... ...........++++|++++++++. ..+.|+.|++........ ...-....-.+.+.+++..+.+++
T Consensus 194 ~~--~~~~--~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 194 SP--NDVR--VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp CS--SCEE--EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred cC--CceE--EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 44 3322 2223345688999999998777664 567899999875432221 222345566788876433344443
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.56 E-value=3.9 Score=43.63 Aligned_cols=219 Identities=13% Similarity=0.144 Sum_probs=98.0
Q ss_pred CeEEEEECCCCceEEE--eeCCCCceEEEEEecCCCEEEEeecC---------CeEEEEEcCCCCCCCcceEEEEEecCc
Q psy8748 1714 GKLIIWDTWTGNKTQV--IPLRSAWVMSVAFAQSGNFVACGGMD---------NMCTVYDLNNRDSTGAAKVIRELLGYE 1782 (2004)
Q Consensus 1714 GtIrVWDl~Tgk~l~t--i~~Ht~~ItsLafSPdg~~LaSGS~D---------GtIrVWDl~t~~~~~~~k~i~sl~gh~ 1782 (2004)
..+.+||..+++-... ++.....- +++. -++..++.|+.. ..+.+||..+.. ...........
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~----w~~~~~~p~~r 92 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ----WSPCAPMSVPR 92 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE----EEECCCCSSCC
T ss_pred ceEEEEECCCCeEEECCCCCCcccee-EEEE-ECCEEEEEeCcccCCCCccccchhhhccccccc----cccccccccee
Confidence 3578999988754432 22211111 2222 256677776632 245667765432 11111111111
Q ss_pred cceeeeEEeCCCcEEEeecCC-----eEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEECC-----CeEEEEE
Q psy8748 1783 GFLSSCRFIDDTTLLTGSGDM-----KIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGSVD-----KSCKLWD 1852 (2004)
Q Consensus 1783 ~~Vssvafsdd~~LlSgS~DG-----tI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS~D-----GsIrIWD 1852 (2004)
. -..++..++..++.++.++ ....+|..+..............-.+.... ++..++.|+.+ ..+..||
T Consensus 93 ~-~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d 170 (288)
T d1zgka1 93 N-RIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYY 170 (288)
T ss_dssp B-TCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEE
T ss_pred c-ceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEee
Confidence 1 1122223444444444333 244566666543321111111111122222 34555555543 3578888
Q ss_pred CCCCeEEEEEecCC-CCeEEEEEeCCCCEEEEEECCC-----eEEEEEccCCceeEEEcCCCCCCCeEEEEEcCCCCEEE
Q psy8748 1853 FREKKCVQTFFGHE-ADVNSVCFHPSGLAFATGSEDK-----TARLFDIRADQQIATYLPPNKNSGFTSCAVSSSGRYIF 1926 (2004)
Q Consensus 1853 lrs~k~I~tl~~h~-s~ItsIafSPdg~~LaSgS~DG-----tIrIWDLrtgk~i~t~~~~~~~s~ItsLafSPdG~~La 1926 (2004)
..+.+....-.... ....+.... ++..++.|+.++ ....+|..+.+....-..+........+. .++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~--~~~~l~v 247 (288)
T d1zgka1 171 PERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYV 247 (288)
T ss_dssp TTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEE
T ss_pred ccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE--ECCEEEE
Confidence 87665332211111 111222222 455566655443 46777776654433221122222222222 3678888
Q ss_pred EEeCCC-----eEEEEECCCCe
Q psy8748 1927 CGSDDN-----NVHVWDLLKTT 1943 (2004)
Q Consensus 1927 SGSsDG-----sIrIWDL~tge 1943 (2004)
.|+.++ .+.+||+.+.+
T Consensus 248 ~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 248 LGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp ECCBCSSCBCCEEEEEETTTTE
T ss_pred EecCCCCeecceEEEEECCCCE
Confidence 877554 37889987643
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=91.20 E-value=4.9 Score=46.04 Aligned_cols=183 Identities=12% Similarity=0.228 Sum_probs=111.1
Q ss_pred cEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEEC------CCCCEEEEEEC--C--CeEEEEECCC-CeEEEEEe
Q psy8748 1795 TLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLS------PDGQYFVTGSV--D--KSCKLWDFRE-KKCVQTFF 1863 (2004)
Q Consensus 1795 ~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafS------Pdg~~LaSGS~--D--GsIrIWDlrs-~k~I~tl~ 1863 (2004)
.++....++-|++||+. |+.+... ..+.+..+..- ....-+++++. + ..|.+|.+.. ...+..+.
T Consensus 42 lI~gTdK~~Gl~vYdL~-G~~l~~~---~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~ 117 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSLE-GKMLHSY---HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT 117 (353)
T ss_dssp EEEEEETTSCCEEEETT-CCEEEEC---CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred EEEEEcCcCCEEEEcCC-CcEEEec---ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence 45555566779999985 6666443 23455554433 22223555552 2 3577887642 22333332
Q ss_pred cC-------CCCeEEEEE--eCC-CC-EEEEEECCCeEEEEEccC---C----ceeEEEcCCCCCCCeEEEEEcCCCCEE
Q psy8748 1864 GH-------EADVNSVCF--HPS-GL-AFATGSEDKTARLFDIRA---D----QQIATYLPPNKNSGFTSCAVSSSGRYI 1925 (2004)
Q Consensus 1864 ~h-------~s~ItsIaf--SPd-g~-~LaSgS~DGtIrIWDLrt---g----k~i~t~~~~~~~s~ItsLafSPdG~~L 1925 (2004)
.. ...+.++|+ ++. |. ++++...+|.+..|.+.. + +.+..+.. ...+..|.++.....|
T Consensus 118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~---~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM---NSQTEGMAADDEYGSL 194 (353)
T ss_dssp CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC---SSCEEEEEEETTTTEE
T ss_pred ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC---CCccceEEEeCCCCcE
Confidence 21 124667777 553 44 566777889999887632 2 23344432 3568899999999999
Q ss_pred EEEeCCCeEEEEECCC-----CeeeEEEcc--CCCCeEEEEEcC--C--CCEEEEEECCCeEEEEECCCC
Q psy8748 1926 FCGSDDNNVHVWDLLK-----TTHNGVLSG--HENRVTSISLSP--N--GMALVTSSWDQFVKVWQESNT 1984 (2004)
Q Consensus 1926 aSGSsDGsIrIWDL~t-----ge~l~tL~g--Hs~~VtsLaFSP--D--g~~LaSgS~DGtIrIWdlstg 1984 (2004)
+++-++..|+.++... +..+....+ ..+.+..++.-. + |-+|+|.-.|++..+|+..+.
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999888777777642 223323222 356788888643 2 334555556889999999874
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.39 E-value=13 Score=39.46 Aligned_cols=263 Identities=13% Similarity=0.041 Sum_probs=132.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEeeCCCCceEEEEE-ecCCCEEEEe------ecCCeEEEEEcCCCCCCCcceEE
Q psy8748 1703 DSRHCVSGSLDGKLIIWDTWTGNKTQVIPLRSAWVMSVAF-AQSGNFVACG------GMDNMCTVYDLNNRDSTGAAKVI 1775 (2004)
Q Consensus 1703 DG~~LASGS~DGtIrVWDl~Tgk~l~ti~~Ht~~ItsLaf-SPdg~~LaSG------S~DGtIrVWDl~t~~~~~~~k~i 1775 (2004)
+.+.++++...|.+.++-+..++.+... ..+|....- .+.=.++..+ -.-..|.+-++... ....
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~-----GEE~ 96 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP-----GEEQ 96 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTST-----TCEE
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEe---cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCC-----Ceee
Confidence 3447788878899999987777665432 233322211 1111222221 12233444444321 1111
Q ss_pred EEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEeeccccCCeEEEEECCCCCEEEEEE----CCCeEEEE
Q psy8748 1776 RELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEVAQAHIGDVVSISLSPDGQYFVTGS----VDKSCKLW 1851 (2004)
Q Consensus 1776 ~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~il~~h~~~ItsLafSPdg~~LaSGS----~DGsIrIW 1851 (2004)
+......-.+.+.++.+.+..++|+......+|-++.|+...-.....-+-|+.+. +++++-.+ ......+-
T Consensus 97 ~i~spk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~----~d~I~G~g~~~g~~~sfF~a 172 (313)
T d2hu7a1 97 RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR----GDLIAGLGFFGGGRVSLFTS 172 (313)
T ss_dssp ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE----TTEEEEEEEEETTEEEEEEE
T ss_pred EecCCceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEecc----CCeEEEEeeecCCcceEEEE
Confidence 11111225677778888888999999999999988888754322212222233332 33322111 11122333
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEEccCCceeEEEcCCC------CCCCeEEEEEcCCC
Q psy8748 1852 DFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSE---DKTARLFDIRADQQIATYLPPN------KNSGFTSCAVSSSG 1922 (2004)
Q Consensus 1852 Dlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~---DGtIrIWDLrtgk~i~t~~~~~------~~s~ItsLafSPdG 1922 (2004)
|+.+|. ++.+...++.++.....+..+. +++-. .....-+|+++++....- .+. ....|+.+-+.|++
T Consensus 173 dl~SG~-lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve-~P~kd~~sy~p~~I~~~~Y~Pdd 249 (313)
T d2hu7a1 173 NLSSGG-LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLE-LPSKDFSSYRPTAITWLGYLPDG 249 (313)
T ss_dssp ETTTEE-EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECC-CSSCHHHHHCCSEEEEEEECTTS
T ss_pred ecccCC-EEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeee-cCcccceeecceEEEeeeeCCCC
Confidence 433332 2333334444555555555443 33322 112224577765543222 121 13457778899999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q psy8748 1923 RYIFCGSDDNNVHVWDLLKTTHNGVLSGHENRVTSISLSPNGMALVTSSWDQFVKVWQESNTI 1985 (2004)
Q Consensus 1923 ~~LaSGSsDGsIrIWDL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdlstg~ 1985 (2004)
+.++++-.||.=++|. +|+.+...+ +.+..+..-.+.-++.-.+-..-=+|-.+..|+
T Consensus 250 ~L~iiakrdG~s~lF~--nGk~in~p~---G~~~gat~i~~~iyfshsSL~tP~kI~~~~~~~ 307 (313)
T d2hu7a1 250 RLAVVARREGRSAVFI--DGERVEAPQ---GNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGE 307 (313)
T ss_dssp CEEEEEEETTEEEEEE--TTEEECCCS---SEEEEEEEETTEEEEEEEETTEEEEEEEETTCC
T ss_pred cEEEEEecCCchheee--cceEecCCC---CcccceEEECCEEEEeecccCCCceeEEcCCCC
Confidence 9999999999999998 676655443 334433332222222223333334555555554
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.07 E-value=21 Score=41.48 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=40.0
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEee--------CCCCceEEEEEecC
Q psy8748 1692 INKVNSVHYSGDSRHCVSGSLDGKLIIWDTWTGNKTQVIP--------LRSAWVMSVAFAQS 1745 (2004)
Q Consensus 1692 t~~VtsLaFSPDG~~LASGS~DGtIrVWDl~Tgk~l~ti~--------~Ht~~ItsLafSPd 1745 (2004)
-..-++|+|.|||+++++--.+|.|++++..++....... .-.+....|+|+|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 4577899999999988877557999999987776543321 11245789999985
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.72 E-value=19 Score=40.40 Aligned_cols=127 Identities=8% Similarity=0.078 Sum_probs=71.0
Q ss_pred cCCeEEEEECCCCceeEE----eeccccCCeEEEEECCCCCEEEEEEC---C------------CeEEEEECCCCeEEEE
Q psy8748 1801 GDMKIVTWNLETGQRIHE----VAQAHIGDVVSISLSPDGQYFVTGSV---D------------KSCKLWDFREKKCVQT 1861 (2004)
Q Consensus 1801 ~DGtI~IWDl~tg~~i~~----il~~h~~~ItsLafSPdg~~LaSGS~---D------------GsIrIWDlrs~k~I~t 1861 (2004)
...+|.+|++........ +.........++++..++.++++-.. + +...+|..+.+... .
T Consensus 122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~-~ 200 (340)
T d1v04a_ 122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR-V 200 (340)
T ss_dssp TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE-E
T ss_pred CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE-E
Confidence 456788887754332111 12223345788888888887776311 0 12334433333332 2
Q ss_pred EecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEccCCceeEEEcCCCCCCCeEEEEEcC-CCCEEEEE
Q psy8748 1862 FFGHEADVNSVCFHPSGLAFATGS-EDKTARLFDIRADQQIATYLPPNKNSGFTSCAVSS-SGRYIFCG 1928 (2004)
Q Consensus 1862 l~~h~s~ItsIafSPdg~~LaSgS-~DGtIrIWDLrtgk~i~t~~~~~~~s~ItsLafSP-dG~~LaSG 1928 (2004)
....-...+.|+++|++++++++. ..++|++|++.............-....-.+.+.+ +|.+.+++
T Consensus 201 ~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 201 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred EcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 222345688999999998776654 57789999987554332221112234456778876 45555444
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.09 E-value=16 Score=40.87 Aligned_cols=238 Identities=7% Similarity=0.029 Sum_probs=130.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCC----CceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE---EcCCCCCCCcceE
Q psy8748 1702 GDSRHCVSGSLDGKLIIWDTWT----GNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY---DLNNRDSTGAAKV 1774 (2004)
Q Consensus 1702 PDG~~LASGS~DGtIrVWDl~T----gk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW---Dl~t~~~~~~~k~ 1774 (2004)
|+...+++-+.+|.|+--++.+ +..-..++ ..+.+..+........++.-+..|.++.- ++........+..
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p 81 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence 5677888889999888654321 11001122 23445555554455555555667765444 4443222222222
Q ss_pred EEEEe---cCccceeeeEEe---CCCcEEEeecCCeEEEEECCCCc------eeEEeeccccCCeEEEEECCCCCEEEEE
Q psy8748 1775 IRELL---GYEGFLSSCRFI---DDTTLLTGSGDMKIVTWNLETGQ------RIHEVAQAHIGDVVSISLSPDGQYFVTG 1842 (2004)
Q Consensus 1775 i~sl~---gh~~~Vssvafs---dd~~LlSgS~DGtI~IWDl~tg~------~i~~il~~h~~~ItsLafSPdg~~LaSG 1842 (2004)
+..+. .....+..+... .+..++..+..|.++..++..-. ....+.......+..+....+...++.+
T Consensus 82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~ 161 (323)
T d1wp5a_ 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEE
Confidence 22221 122222233222 35679999999999999864321 1212223445567777777777789999
Q ss_pred ECCCeEEEEECCCCeE-------EEEEe-cCCCCeEEE-EEeCCCCEEEEEECCCeEEEEEccCCc-------eeEEEcC
Q psy8748 1843 SVDKSCKLWDFREKKC-------VQTFF-GHEADVNSV-CFHPSGLAFATGSEDKTARLFDIRADQ-------QIATYLP 1906 (2004)
Q Consensus 1843 S~DGsIrIWDlrs~k~-------I~tl~-~h~s~ItsI-afSPdg~~LaSgS~DGtIrIWDLrtgk-------~i~t~~~ 1906 (2004)
+..|.+..++...-.. +.-+. ...+.+.+. ...+++..+++.+..|..+...+.... -+..+..
T Consensus 162 t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~ 241 (323)
T d1wp5a_ 162 THNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRE 241 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCC
T ss_pred EecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhccccccccccccccc
Confidence 9999999998653211 22221 123445544 445566788889999988887654321 1111211
Q ss_pred C-CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy8748 1907 P-NKNSGFTSCAVSSSGRYIFCGSDDNNVHVWDLL 1940 (2004)
Q Consensus 1907 ~-~~~s~ItsLafSPdG~~LaSGSsDGsIrIWDL~ 1940 (2004)
. .....+..+....+...++..+..|.+.-.++.
T Consensus 242 ~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~ 276 (323)
T d1wp5a_ 242 LKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred cccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence 1 112335555555566677777777877666653
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=88.42 E-value=15 Score=41.70 Aligned_cols=194 Identities=12% Similarity=0.221 Sum_probs=108.1
Q ss_pred CCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCccceeeeEEe------CCC-cEEEeec-C---CeEEEEECCCC
Q psy8748 1745 SGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLSSCRFI------DDT-TLLTGSG-D---MKIVTWNLETG 1813 (2004)
Q Consensus 1745 dg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vssvafs------dd~-~LlSgS~-D---GtI~IWDl~tg 1813 (2004)
+..+++....++-+.+||++.. .+..+. .+.+..+... ... .+++++. + ..|.+|.+...
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~G~-------~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~ 109 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLEGK-------MLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK 109 (353)
T ss_dssp GGCEEEEEETTSCCEEEETTCC-------EEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETT
T ss_pred CccEEEEEcCcCCEEEEcCCCc-------EEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCc
Confidence 4557777777777999999632 222222 1223222221 122 2444442 1 36778877532
Q ss_pred c-eeEEeec------cccCCeEEEEE--CCC-CC-EEEEEECCCeEEEEECC---CC----eEEEEEecCCCCeEEEEEe
Q psy8748 1814 Q-RIHEVAQ------AHIGDVVSISL--SPD-GQ-YFVTGSVDKSCKLWDFR---EK----KCVQTFFGHEADVNSVCFH 1875 (2004)
Q Consensus 1814 ~-~i~~il~------~h~~~ItsLaf--SPd-g~-~LaSGS~DGsIrIWDlr---s~----k~I~tl~~h~s~ItsIafS 1875 (2004)
. .+..+.. .....+..+|+ ++. |. ++++...+|.+..|.+. .+ +.++.+ .....+.++.+.
T Consensus 110 ~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~~q~EGCVvD 188 (353)
T d1h6la_ 110 NGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KMNSQTEGMAAD 188 (353)
T ss_dssp TTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-ECSSCEEEEEEE
T ss_pred ccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CCCCccceEEEe
Confidence 2 2222211 11224666666 664 44 56677788999888763 23 334445 345678899999
Q ss_pred CCCCEEEEEECCCeEEEEEccC-----CceeEEEcCCCCCCCeEEEEEcC--CCC-EEEEE-eCCCeEEEEECCC-Ceee
Q psy8748 1876 PSGLAFATGSEDKTARLFDIRA-----DQQIATYLPPNKNSGFTSCAVSS--SGR-YIFCG-SDDNNVHVWDLLK-TTHN 1945 (2004)
Q Consensus 1876 Pdg~~LaSgS~DGtIrIWDLrt-----gk~i~t~~~~~~~s~ItsLafSP--dG~-~LaSG-SsDGsIrIWDL~t-ge~l 1945 (2004)
.....|+.+-++..|..++... +..+...........+-.+++-. ++. ||++. -.+++..+||... .+.+
T Consensus 189 de~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~ 268 (353)
T d1h6la_ 189 DEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYV 268 (353)
T ss_dssp TTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred CCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcccc
Confidence 9989999998887776666542 11222222222345566666543 332 55444 4578999999876 3566
Q ss_pred EEE
Q psy8748 1946 GVL 1948 (2004)
Q Consensus 1946 ~tL 1948 (2004)
..+
T Consensus 269 g~F 271 (353)
T d1h6la_ 269 ADF 271 (353)
T ss_dssp EEE
T ss_pred ceE
Confidence 555
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.02 E-value=14 Score=42.39 Aligned_cols=141 Identities=10% Similarity=0.023 Sum_probs=84.6
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEccCCceeEEE
Q psy8748 1825 GDVVSISLSPDGQYFVTGSVDKSCKLWDFREKKCVQTFFGHEADVNSVCFHPSGLAFATGSEDKTARLFDIRADQQIATY 1904 (2004)
Q Consensus 1825 ~~ItsLafSPdg~~LaSGS~DGsIrIWDlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSgS~DGtIrIWDLrtgk~i~t~ 1904 (2004)
..|..++|+- ..+++.. ++.+..++...-...........++..+.+.|. .++....+|.+.++++..++.....
T Consensus 87 p~v~~vafs~--d~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~ 161 (381)
T d1xipa_ 87 PDVIFVCFHG--DQVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLA 161 (381)
T ss_dssp TTEEEEEEET--TEEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCeEEEEeeC--CEEEEEe-CCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccccc
Confidence 3588899974 4555554 567888887765544444455667888888775 5667778999999999887643322
Q ss_pred cC---CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEE-ECCCCeeeEEEccCCCCeEEEEEcCCCCEEEEEE
Q psy8748 1905 LP---PNKNSGFTSCAVSSSGRYIFCGSDDNNVHVW-DLLKTTHNGVLSGHENRVTSISLSPNGMALVTSS 1971 (2004)
Q Consensus 1905 ~~---~~~~s~ItsLafSPdG~~LaSGSsDGsIrIW-DL~tge~l~tL~gHs~~VtsLaFSPDg~~LaSgS 1971 (2004)
.. ........+++|++.|..+++|..++ ..+- ++.....+.........|.+|.|-.+..++++-+
T Consensus 162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 162 QNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp ESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence 00 01124567778887777777764332 2111 1111111000012345688999987777666553
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.20 E-value=43 Score=37.19 Aligned_cols=235 Identities=11% Similarity=0.107 Sum_probs=132.7
Q ss_pred cCCCEEEEeecCCeEEEEEcCCCCCCCcceEEEEEecCcccee-eeEEeCCCcEEEeecCCeEEEEE---CCC------C
Q psy8748 1744 QSGNFVACGGMDNMCTVYDLNNRDSTGAAKVIRELLGYEGFLS-SCRFIDDTTLLTGSGDMKIVTWN---LET------G 1813 (2004)
Q Consensus 1744 Pdg~~LaSGS~DGtIrVWDl~t~~~~~~~k~i~sl~gh~~~Vs-svafsdd~~LlSgS~DGtI~IWD---l~t------g 1813 (2004)
|+...+++-+.+|.|+--..+......... ..... .+.+. .......+.++.-+..|.++... +.. |
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~--~~~k~-~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G 79 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQD--FAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCC--CCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCC--CcccC-CceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccc
Confidence 567788889999999866554211000000 00112 22333 33334556677778888776654 332 2
Q ss_pred ceeEEeec-cccCCeEEE-EECC--CCCEEEEEECCCeEEEEECCCCe------EEEEE-ecCCCCeEEEEEeCCCCEEE
Q psy8748 1814 QRIHEVAQ-AHIGDVVSI-SLSP--DGQYFVTGSVDKSCKLWDFREKK------CVQTF-FGHEADVNSVCFHPSGLAFA 1882 (2004)
Q Consensus 1814 ~~i~~il~-~h~~~ItsL-afSP--dg~~LaSGS~DGsIrIWDlrs~k------~I~tl-~~h~s~ItsIafSPdg~~La 1882 (2004)
..+..+.. .....+..+ ...+ +..+++..+..|.++..++.... ....+ ......+..+....+...++
T Consensus 80 ~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~ 159 (323)
T d1wp5a_ 80 QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF 159 (323)
T ss_dssp EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred ccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEE
Confidence 22222211 223344443 3332 46789999999999999864321 11111 13455677777777777899
Q ss_pred EEECCCeEEEEEccCCce-------eEEEcCCCCCCCeEE-EEEcCCCCEEEEEeCCCeEEEEECCCCe-------eeEE
Q psy8748 1883 TGSEDKTARLFDIRADQQ-------IATYLPPNKNSGFTS-CAVSSSGRYIFCGSDDNNVHVWDLLKTT-------HNGV 1947 (2004)
Q Consensus 1883 SgS~DGtIrIWDLrtgk~-------i~t~~~~~~~s~Its-LafSPdG~~LaSGSsDGsIrIWDL~tge-------~l~t 1947 (2004)
.++..|.+..|+...-.. +.-+.... ...+.. ..+.+++..+++.+..|..+...+.... -+..
T Consensus 160 l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~-~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~ 238 (323)
T d1wp5a_ 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVI 238 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEEC
T ss_pred EEEecceeeEeecccccccCccccccccccccc-ccccchhhhccccccceeeeeeeheeecccchhhcccccccccccc
Confidence 999999999998753222 11122222 234444 4555677889999999998887663321 1111
Q ss_pred E---ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q psy8748 1948 L---SGHENRVTSISLSPNGMALVTSSWDQFVKVWQES 1982 (2004)
Q Consensus 1948 L---~gHs~~VtsLaFSPDg~~LaSgS~DGtIrIWdls 1982 (2004)
+ ......|..+....+...|+..+..|.+.-.++.
T Consensus 239 ~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~ 276 (323)
T d1wp5a_ 239 LRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp SCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred ccccccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence 1 1223446666666666667777777776655554
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.67 E-value=14 Score=42.47 Aligned_cols=178 Identities=13% Similarity=0.033 Sum_probs=98.1
Q ss_pred cceeEEEEeCCCCEEEEEeCCCeEEEEECC-----------CCceEEEeeCCCCceEEEEEecCCCEEEEeecCCeEEEE
Q psy8748 1693 NKVNSVHYSGDSRHCVSGSLDGKLIIWDTW-----------TGNKTQVIPLRSAWVMSVAFAQSGNFVACGGMDNMCTVY 1761 (2004)
Q Consensus 1693 ~~VtsLaFSPDG~~LASGS~DGtIrVWDl~-----------Tgk~l~ti~~Ht~~ItsLafSPdg~~LaSGS~DGtIrVW 1761 (2004)
...+-+++++...+++.|+.++ ++|-.+. ......... -..|..++|+ ++.+++. .++.+..+
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs--~d~l~v~-~~~~l~~~ 110 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFH--GDQVLVS-TRNALYSL 110 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEE--TTEEEEE-ESSEEEEE
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEee--CCEEEEE-eCCCEEEE
Confidence 3466889999888999888875 5666521 111111111 2358889997 4445554 45567888
Q ss_pred EcCCCCCCCcceEEEEEecCccceeeeEEeCCCcEEEeecCCeEEEEECCCCceeEEe----eccccCCeEEEEECCCCC
Q psy8748 1762 DLNNRDSTGAAKVIRELLGYEGFLSSCRFIDDTTLLTGSGDMKIVTWNLETGQRIHEV----AQAHIGDVVSISLSPDGQ 1837 (2004)
Q Consensus 1762 Dl~t~~~~~~~k~i~sl~gh~~~Vssvafsdd~~LlSgS~DGtI~IWDl~tg~~i~~i----l~~h~~~ItsLafSPdg~ 1837 (2004)
+..... . ..........+..+.+.+ ..++....+|.+.++++..++..... ...-.+.+.+++|++.|.
T Consensus 111 ~~~~l~---~---~~~~~~~~~~~~~~~~~p-~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgk 183 (381)
T d1xipa_ 111 DLEELS---E---FRTVTSFEKPVFQLKNVN-NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSF 183 (381)
T ss_dssp ESSSTT---C---EEEEEECSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCE
T ss_pred Eeeccc---c---ccccccccccccceecCC-ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcE
Confidence 776432 1 122222334456666655 35667778899999999887643211 011235577777777777
Q ss_pred EEEEEECCCeEEEE-ECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE
Q psy8748 1838 YFVTGSVDKSCKLW-DFREKKCVQTFFGHEADVNSVCFHPSGLAFATG 1884 (2004)
Q Consensus 1838 ~LaSGS~DGsIrIW-Dlrs~k~I~tl~~h~s~ItsIafSPdg~~LaSg 1884 (2004)
.++++..++ ..+- ++.....+..-......+.+|.|-.+..++++-
T Consensus 184 q~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 184 QSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 776664221 1111 111100000001124467888998776665544
|