Psyllid ID: psy8764

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Protein Sequence
MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALHLATISHHFYRPTFLDRNLALFFHNCVFVGSNPTPTLFLQVLLHTELERNLPKFLLEKVDKMEIYEYPNECKGKLGFLDLVIRKWFCNPFTEDAIDMVLESNGNDVFTDEIDKLKRKLNEIQIHLDHQFMFLRLIVHKMDIKTETDERDEGTSSNKELHPLLYICGTAISTYMLFSVAVQSVQIYQQKWHYLFDPTNIVALLLFFSATIMIVPLFTKGRYMTDYQISFTSLTVFLSWLTLLLNLQSLL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHccccccccHHHHHHHHHcHHHHHHHHHccccccccccccccHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEHHHHcccHHHHHHHccccEEEEcccccccccHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHccHHHccccccccccHHHHHHHcccHHHHHHHHHccccEEEccccccHHHHHHHcccHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHcHHHHHHHHHHcccccccccccccEEEEEEEEEEEcccHHHHHcccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHEEEEEEEcHHHHHHccHHHHHccccccEEEccccccccccHHHHHHHHHccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
msgytntmVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKllyncmdlsaIDYAIYYKFPEAALAMVTHntrgteimslrsdkhpcvTLALVASMPrvfesvqdksitkanckkdskSFYIKYNFSCLqclriypeinektgdataiskpiplpalnntaLHLATIShhfyrptfldrnlalffhncvfvgsnptpTLFLQVLLHTELERNLPKFLLEKVDKmeiyeypneckgklgfLDLVIRKWfcnpftedAIDMVLEsngndvftDEIDKLKRKLNEIQIHLDHQFMFLRLIVHKMdiktetderdegtssnkelhpLLYICGTAISTYMLFSVAVQSVQIYQQKWHYLFDPTNIVALLLFFSATIMIvplftkgrymtdyQISFTSLTVFLSWLTLLLNLQSLL
Flexible Loop (DISEMBL)
MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFesvqdksitkanckkdsksfYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALHLATISHHFYRPTFLDRNLALFFHNCVFVGSNPTPTLFLQVLLHTELERNLPKFLLEKVDKMEIYEYPNECKGKLGFLDLVIRKWFCNPFTEDAIDMVLESNGNDVFTDEIDKLKRKLNEIQIHLDHQFMFLRLIVHKMDIKTETderdegtssnkelhpLLYICGTAISTYMLFSVAVQSVQIYQQKWHYLFDPTNIVALLLFFSATIMIVPLFTKGRYMTDYQISFTSLTVFLSWLTLLLNLQSLL
Low Complexity Region (SEG)
MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAIclllslnckllyncMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALHLATISHHFYRPTFLDRNLALFFHNCVFVGSNPTPTLFLQVLLHTELERNLPKFLLEKVDKMEIYEYPNECKGKLGFLDLVIRKWFCNPFTEDAIDMVLESNGNDVFTDEIDKLKRKLNEIQIHLDHQFMFLRLIVHKMDIKTETDERDEGTSSNKELHPLLYICGTAISTYMLFSVAVQSVQIYQQKWHYLFDPTNIVALLLFFSATIMIVPLFTKGRYMTDYQISFtsltvflswltlllnlqsll
Disordered region (IsUnstruct)
********VHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALHLATISHHFYRPTFLDRNLALFFHNCVFVGSNPTPTLFLQVLLHTELERNLPKFLLEKVDKMEIYEYPNECKGKLGFLDLVIRKWFCNPFTEDAIDMVLESNGNDVFTDEIDKLKRKLNEIQIHLDHQFMFLRLIVHKMDI****************LHPLLYICGTAISTYMLFSVAVQSVQIYQQKWHYLFDPTNIVALLLFFSATIMIVPLFTKGRYMTDYQISFTSLTVFLSWLTLLLNL****
Disordered Region (DISOPRED)
*SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKANCKKDSKSFYIKYNFSCLQCLRIYPEI*E**GD*TAISKPIPLPALNNTALHLATISHHFYRPTFLDRNLALFFHNCVFVGSNPTPTLFLQVLLHTELERNLPKFLLEKVDKMEIYEYPNECKGKLGFLDLVIRKWFCNPFTEDAIDMVLESNGNDVFTDEIDKLKRKLNEIQIHLDHQFMFLRLIVHKMDIKTETDERDEGTSSNKELHPLLYICGTAISTYMLFSVAVQSVQIYQQKWHYLFDPTNIVALLLFFSATIMIVPLFTKGRYMTDYQISFTSLTVFLSWLTLLLNLQSLL
Disordered Region (DISEMBL)
MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALHLATISHHFYRPTFLDRNLALFFHNCVFVGSNPTPTLFLQVLLHTELERNLPKFLLEKVDKMEIYEYPNECKGKLGFLDLVIRKWFCNPFTEDAIDMVLESNGNDVFTDEIDKLKRKLNEIQIHLDHQFMFLRLIVHKMDIKT***********NKELHPLLYICGTAISTYMLFSVAVQSVQIYQQKWHYLFDPTNIVALLLFFSATIMIVPLFTKGRYMTDYQISFTSLTVFLSWLTLLLNLQSLL
Disordered Region (DISPRO)
*SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALHLATISHHFYRPTFLDRNLALFFHNCVFVGSNPTPTLFLQVLLHTELERNLPKFLLEKVDKMEIYEYPNECKGKLGFLDLVIRKWFCNPFTEDAIDMVLESNGNDVFTDEIDKLKRKLNEIQIHLDHQFMFLRLIVHKMDIKTETD***EGTSSNKELHPLLYICGTAISTYMLFSVAVQSVQIYQQKWHYLFDPTNIVALLLFFSATIMIVPLFTKGRYMTDYQISFTSLTVFLSWLTLLLNLQSLL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALHLATISHHFYRPTFLDRNLALFFHNCVFVGSNPTPTLFLQVLLHTELERNLPKFLLEKVDKMEIYEYPNECKGKLGFLDLVIRKWFCNPFTEDAIDMVLESNGxxxxxxxxxxxxxxxxxxxxxLDHQFMFLRLIVHKMDIKTETDERDEGTSSNKELHPLLYICGTAISTYMLFSVAVQSVQIYQQKWHYLFDPTNIVALLLFFSATIMIVPLFTKGRYMTDYQISFTSLTVFLSWLTLLLNLQSLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	420	2.2.26 [Sep-21-2011]
Q7Z020	1296	Transient receptor potent	yes	N/A	0.409	0.132	0.728	7e-72
O75762	1119	Transient receptor potent	yes	N/A	0.383	0.143	0.325	2e-13
Q8BLA8	1125	Transient receptor potent	yes	N/A	0.333	0.124	0.312	3e-12
Q6RI86	1125	Transient receptor potent	yes	N/A	0.333	0.124	0.305	1e-11

>sp|Q7Z020|TRPA1_DROME Transient receptor potential cation channel subfamily A member 1 OS=Drosophila melanogaster GN=TrpA1 PE=2 SV=3

 Score =  271 bits (693), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 149/173 (86%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
           MSGYT T+  L+SVHSHLLDQVDKDGNTALHLATMENKP AI +L+S+ CKL+YN +D+S
Sbjct: 653 MSGYTETIELLHSVHSHLLDQVDKDGNTALHLATMENKPHAISVLMSMGCKLVYNVLDMS 712

Query: 61  AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK 120
           AIDYAIYYK+PEAALAMVTH  R  E+M+LRSDKHPCVTLAL+ASMP+VFE+VQDK ITK
Sbjct: 713 AIDYAIYYKYPEAALAMVTHEERANEVMALRSDKHPCVTLALIASMPKVFEAVQDKCITK 772

Query: 121 ANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALH 173
           ANCKKDSKSFYIKY+F+ LQC  ++ +I+EKTG++   + PIPLPALN    H
Sbjct: 773 ANCKKDSKSFYIKYSFAFLQCPFMFAKIDEKTGESITTASPIPLPALNTMVTH 825

Essential for thermotaxis by sensing environmental temperature. Receptor-activated non-selective cation channel involved in detection of sensations such as temperature. Involved in heat nociception by being activated by warm temperature of about 24-29 degrees Celsius.
Drosophila melanogaster (taxid: 7227)

>sp|O75762|TRPA1_HUMAN Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=2 SV=3

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 11/172 (6%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
           M GYT TM  +   +    D++D+DGNTALH A  E   KA+ LLLS N  ++ N    S
Sbjct: 523 MGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIVLNKQQAS 582

Query: 61  AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHP---CVTLALVASMPRVFESVQDKS 117
            +  A++ K  E  L ++  + R  E + + S   P   C    ++  +P   + + D  
Sbjct: 583 FLHLALHNKRKEVVLTII-RSKRWDECLKIFSHNSPGNKCPITEMIEYLPECMKVLLDFC 641

Query: 118 ITKANCKKDSKSFYIKYNFSCLQCLRIYP-EINEKTGDATAISKPIPLPALN 168
           +  +   K  + +YI+YNF  LQC    P E  +KT     I +  PL ALN
Sbjct: 642 MLHSTEDKSCRDYYIEYNFKYLQC----PLEFTKKTPTQDVIYE--PLTALN 687

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Homo sapiens (taxid: 9606)

>sp|Q8BLA8|TRPA1_MOUSE Transient receptor potential cation channel subfamily A member 1 OS=Mus musculus GN=Trpa1 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
           M GYT TM  +   +    D++D++GNTALH A  E   KA+ +LLS N  +L N    S
Sbjct: 524 MGGYTQTMKVILDTNLKCTDRLDEEGNTALHFAAREGHAKAVAMLLSYNADILLNKKQAS 583

Query: 61  AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHP---CVTLALVASMPRVFESVQDKS 117
            +  A++ K  E  L  +  N R  E + + +   P   C  + +V  +P   + + D  
Sbjct: 584 FLHIALHNKRKEVVLTTI-RNKRWDECLQVFTHNSPSNRCPIMEMVEYLPECMKVLLDFC 642

Query: 118 ITKANCKKDSKSFYIKYNFSCLQC 141
           +  +   K  + ++I+YNF  LQC
Sbjct: 643 MIPSTEDKSCQDYHIEYNFKYLQC 666

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Mus musculus (taxid: 10090)

>sp|Q6RI86|TRPA1_RAT Transient receptor potential cation channel subfamily A member 1 OS=Rattus norvegicus GN=Trpa1 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
           M GYT TM  +   +    D++D++GNTALH A  E   KA+ +LLS N  +L N    S
Sbjct: 524 MGGYTQTMKVILDTNLKCTDRLDEEGNTALHFAAREGHAKAVAMLLSYNADILLNKKQAS 583

Query: 61  AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHP---CVTLALVASMPRVFESVQDKS 117
            +  A++ K  E  L  +  + R  E + + +   P   C  + +V  +P   + + D  
Sbjct: 584 FLHIALHNKRKEVVLTTI-RSKRWDECLQVFTHDSPSNRCPIMEMVEYLPECMKVLLDFC 642

Query: 118 ITKANCKKDSKSFYIKYNFSCLQC 141
           +  +   K  + ++I+YNF  LQC
Sbjct: 643 MIPSTEDKSCQDYHIEYNFKYLQC 666

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
195491033	1238	GE21276 [Drosophila yakuba] gi|194179491	0.359	0.121	0.734	2e-70
442631143	1197	transient receptor potential A1, isoform	0.409	0.143	0.728	4e-70
194748865	1233	GF10143 [Drosophila ananassae] gi|190624	0.397	0.135	0.75	4e-70
238054359	1296	RecName: Full=Transient receptor potenti	0.409	0.132	0.728	5e-70
442631139	1232	transient receptor potential A1, isoform	0.409	0.139	0.728	5e-70
358681383	1251	TRPA1(A) isoform [Drosophila melanogaste	0.409	0.137	0.728	5e-70
194865766	1254	GG15054 [Drosophila erecta] gi|190653376	0.397	0.133	0.744	1e-69
296034212	1193	TRPA1 [Drosophila mojavensis]	0.409	0.144	0.728	1e-69
296034214	1200	TRPA1 [Drosophila virilis]	0.409	0.143	0.722	2e-69
195125906	1225	GI12404 [Drosophila mojavensis] gi|19391	0.397	0.136	0.744	3e-69

>gi|195491033|ref|XP_002093390.1| GE21276 [Drosophila yakuba] gi|194179491|gb|EDW93102.1| GE21276 [Drosophila yakuba]

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/173 (73%), Positives = 149/173 (86%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
           MSGYT T+  L+SVHSHLLDQVDKDGNTALHLATMENKP AI +L+S+ CKLLYN +D+S
Sbjct: 574 MSGYTETIELLHSVHSHLLDQVDKDGNTALHLATMENKPHAISVLMSMGCKLLYNVLDMS 633

Query: 61  AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK 120
           AIDYAIYYK+PEAALAMVTH  R  E+M+LRSDKHPCVTLAL+ASMP+VFE+VQDK ITK
Sbjct: 634 AIDYAIYYKYPEAALAMVTHEERANEVMALRSDKHPCVTLALIASMPKVFEAVQDKCITK 693

Query: 121 ANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALH 173
           ANCKKDSKSFYIKY+F+ LQC  ++ +I+EKTG++   + PIPLPALN    H
Sbjct: 694 ANCKKDSKSFYIKYSFAFLQCPFMFAKIDEKTGESITTASPIPLPALNTMVTH 746

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442631143|ref|NP_648263.5| transient receptor potential A1, isoform I [Drosophila melanogaster] gi|32351041|gb|AAP76197.1| ANKTM1 [Drosophila melanogaster] gi|440215511|gb|AAF50356.5| transient receptor potential A1, isoform I [Drosophila melanogaster]

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 149/173 (86%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
           MSGYT T+  L+SVHSHLLDQVDKDGNTALHLATMENKP AI +L+S+ CKL+YN +D+S
Sbjct: 554 MSGYTETIELLHSVHSHLLDQVDKDGNTALHLATMENKPHAISVLMSMGCKLVYNVLDMS 613

Query: 61  AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK 120
           AIDYAIYYK+PEAALAMVTH  R  E+M+LRSDKHPCVTLAL+ASMP+VFE+VQDK ITK
Sbjct: 614 AIDYAIYYKYPEAALAMVTHEERANEVMALRSDKHPCVTLALIASMPKVFEAVQDKCITK 673

Query: 121 ANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALH 173
           ANCKKDSKSFYIKY+F+ LQC  ++ +I+EKTG++   + PIPLPALN    H
Sbjct: 674 ANCKKDSKSFYIKYSFAFLQCPFMFAKIDEKTGESITTASPIPLPALNTMVTH 726

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194748865|ref|XP_001956862.1| GF10143 [Drosophila ananassae] gi|190624144|gb|EDV39668.1| GF10143 [Drosophila ananassae]

 Score =  271 bits (693), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 149/168 (88%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
           MSGYT T+  L+SVHSHLLDQVDKDGNTALHLATMENKP AI +L+S+ CKL+YN +D+S
Sbjct: 554 MSGYTETIELLHSVHSHLLDQVDKDGNTALHLATMENKPHAISVLMSMGCKLVYNVLDMS 613

Query: 61  AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK 120
           AIDYAIYYK+PEAALAMVTH  R  E+M+LRSDKHPCVTLAL+ASMP+VFE+VQDK ITK
Sbjct: 614 AIDYAIYYKYPEAALAMVTHEERANEVMALRSDKHPCVTLALIASMPKVFEAVQDKCITK 673

Query: 121 ANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALN 168
           ANCKKDSKSFYIKY+F+ LQC  ++ +I+EKTG++ A + PIPLPALN
Sbjct: 674 ANCKKDSKSFYIKYSFAFLQCPFMFAKIDEKTGESIATTNPIPLPALN 721

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|238054359|sp|Q7Z020.3|TRPA1_DROME RecName: Full=Transient receptor potential cation channel subfamily A member 1; Short=dTRPA1; AltName: Full=Ankyrin-like with transmembrane domains protein 1; Short=dANKTM1

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 149/173 (86%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
           MSGYT T+  L+SVHSHLLDQVDKDGNTALHLATMENKP AI +L+S+ CKL+YN +D+S
Sbjct: 653 MSGYTETIELLHSVHSHLLDQVDKDGNTALHLATMENKPHAISVLMSMGCKLVYNVLDMS 712

Query: 61  AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK 120
           AIDYAIYYK+PEAALAMVTH  R  E+M+LRSDKHPCVTLAL+ASMP+VFE+VQDK ITK
Sbjct: 713 AIDYAIYYKYPEAALAMVTHEERANEVMALRSDKHPCVTLALIASMPKVFEAVQDKCITK 772

Query: 121 ANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALH 173
           ANCKKDSKSFYIKY+F+ LQC  ++ +I+EKTG++   + PIPLPALN    H
Sbjct: 773 ANCKKDSKSFYIKYSFAFLQCPFMFAKIDEKTGESITTASPIPLPALNTMVTH 825

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442631139|ref|NP_001261600.1| transient receptor potential A1, isoform G [Drosophila melanogaster] gi|356892152|gb|AET41695.1| TRPA1 isoform D [Drosophila melanogaster] gi|440215509|gb|AGB94295.1| transient receptor potential A1, isoform G [Drosophila melanogaster]

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 149/173 (86%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
           MSGYT T+  L+SVHSHLLDQVDKDGNTALHLATMENKP AI +L+S+ CKL+YN +D+S
Sbjct: 589 MSGYTETIELLHSVHSHLLDQVDKDGNTALHLATMENKPHAISVLMSMGCKLVYNVLDMS 648

Query: 61  AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK 120
           AIDYAIYYK+PEAALAMVTH  R  E+M+LRSDKHPCVTLAL+ASMP+VFE+VQDK ITK
Sbjct: 649 AIDYAIYYKYPEAALAMVTHEERANEVMALRSDKHPCVTLALIASMPKVFEAVQDKCITK 708

Query: 121 ANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALH 173
           ANCKKDSKSFYIKY+F+ LQC  ++ +I+EKTG++   + PIPLPALN    H
Sbjct: 709 ANCKKDSKSFYIKYSFAFLQCPFMFAKIDEKTGESITTASPIPLPALNTMVTH 761

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|358681383|gb|AEU17952.1| TRPA1(A) isoform [Drosophila melanogaster]

 Score =  271 bits (692), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 149/173 (86%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
           MSGYT T+  L+SVHSHLLDQVDKDGNTALHLATMENKP AI +L+S+ CKL+YN +D+S
Sbjct: 608 MSGYTETIELLHSVHSHLLDQVDKDGNTALHLATMENKPHAISVLMSMGCKLVYNVLDMS 667

Query: 61  AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK 120
           AIDYAIYYK+PEAALAMVTH  R  E+M+LRSDKHPCVTLAL+ASMP+VFE+VQDK ITK
Sbjct: 668 AIDYAIYYKYPEAALAMVTHEERANEVMALRSDKHPCVTLALIASMPKVFEAVQDKCITK 727

Query: 121 ANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALH 173
           ANCKKDSKSFYIKY+F+ LQC  ++ +I+EKTG++   + PIPLPALN    H
Sbjct: 728 ANCKKDSKSFYIKYSFAFLQCPFMFAKIDEKTGESITTASPIPLPALNTMVTH 780

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865766|ref|XP_001971593.1| GG15054 [Drosophila erecta] gi|190653376|gb|EDV50619.1| GG15054 [Drosophila erecta]

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 148/168 (88%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
           MSGYT T+  L+SVHSHLLDQVDKDGNTALHLATMENKP AI +L+S+ CKL+YN +D+S
Sbjct: 575 MSGYTETIELLHSVHSHLLDQVDKDGNTALHLATMENKPHAISVLMSMGCKLVYNVLDMS 634

Query: 61  AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK 120
           AIDYAIYYK+PEAALAMVTH  R  E+M+LRSDKHPCVTLAL+ASMP+VFE+VQDK ITK
Sbjct: 635 AIDYAIYYKYPEAALAMVTHEERANEVMALRSDKHPCVTLALIASMPKVFEAVQDKCITK 694

Query: 121 ANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALN 168
           ANCKKDSKSFYIKY+F+ LQC  ++ +I+EKTG++   + PIPLPALN
Sbjct: 695 ANCKKDSKSFYIKYSFAFLQCPFMFAKIDEKTGESVTTASPIPLPALN 742

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|296034212|gb|ADG84993.1| TRPA1 [Drosophila mojavensis]

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 148/173 (85%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
           MSGYT T+  L+SVHSHLLDQ+DKDGNTALHLATMENKP AI +L+S+ CKL+YN +D+S
Sbjct: 552 MSGYTETIELLHSVHSHLLDQLDKDGNTALHLATMENKPHAISVLMSMGCKLVYNVLDMS 611

Query: 61  AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK 120
           AIDYAIYYK+PEAALAMVTH  R  E+M+LRSDKHPCVTLAL+ASMP+VFE+VQDK ITK
Sbjct: 612 AIDYAIYYKYPEAALAMVTHEERANEVMALRSDKHPCVTLALIASMPKVFEAVQDKCITK 671

Query: 121 ANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALH 173
           ANCKKDSKSFYIKY+F+ LQC  ++ +I+EKTG+    S PIPLPALN    H
Sbjct: 672 ANCKKDSKSFYIKYSFAFLQCPYMFAKIDEKTGEPIMTSNPIPLPALNTMVTH 724

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|296034214|gb|ADG84994.1| TRPA1 [Drosophila virilis]

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 125/173 (72%), Positives = 148/173 (85%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
           MSGYT T+  L+SVHSHLLDQ+DKDGNTALHLATMENKP AI +L+S+ CKL+YN +D+S
Sbjct: 557 MSGYTETIELLHSVHSHLLDQLDKDGNTALHLATMENKPHAISVLMSMGCKLVYNVLDMS 616

Query: 61  AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK 120
           AIDYAIYYK+PEAALAMVTH  R  E+M+LRSDKHPCVTLAL+ASMP+VFE+VQDK ITK
Sbjct: 617 AIDYAIYYKYPEAALAMVTHEERANEVMALRSDKHPCVTLALIASMPKVFEAVQDKCITK 676

Query: 121 ANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALH 173
           ANCKKDSKSFYI+Y+F+ LQC  ++ +I+EKTG+    S PIPLPALN    H
Sbjct: 677 ANCKKDSKSFYIRYSFAFLQCPYMFAKIDEKTGEPIMTSNPIPLPALNTMVTH 729

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195125906|ref|XP_002007415.1| GI12404 [Drosophila mojavensis] gi|193919024|gb|EDW17891.1| GI12404 [Drosophila mojavensis]

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 147/168 (87%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLS 60
           MSGYT T+  L+SVHSHLLDQ+DKDGNTALHLATMENKP AI +L+S+ CKL+YN +D+S
Sbjct: 548 MSGYTETIELLHSVHSHLLDQLDKDGNTALHLATMENKPHAISVLMSMGCKLVYNVLDMS 607

Query: 61  AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK 120
           AIDYAIYYK+PEAALAMVTH  R  E+M+LRSDKHPCVTLAL+ASMP+VFE+VQDK ITK
Sbjct: 608 AIDYAIYYKYPEAALAMVTHEERANEVMALRSDKHPCVTLALIASMPKVFEAVQDKCITK 667

Query: 121 ANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALN 168
           ANCKKDSKSFYIKY+F+ LQC  ++ +I+EKTG+    S PIPLPALN
Sbjct: 668 ANCKKDSKSFYIKYSFAFLQCPYMFAKIDEKTGEPIMTSNPIPLPALN 715

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
FB|FBgn0035934	1296	TrpA1 "Transient receptor pote	0.411	0.133	0.687	6.1e-92
ZFIN|ZDB-GENE-050106-1	1120	trpa1b "transient receptor pot	0.383	0.143	0.313	3e-21
UNIPROTKB|G5E522	1126	TRPA1 "Uncharacterized protein	0.564	0.210	0.261	6.6e-21
UNIPROTKB|F1RWI1	1121	TRPA1 "Uncharacterized protein	0.559	0.209	0.258	5.1e-20
UNIPROTKB|O75762	1119	TRPA1 "Transient receptor pote	0.557	0.209	0.262	1e-19
ZFIN|ZDB-GENE-050105-6	1126	trpa1a "transient receptor pot	0.378	0.141	0.305	2.9e-17
UNIPROTKB|E1C7Y7	1074	TRPA1 "Uncharacterized protein	0.447	0.175	0.287	1.1e-16
UNIPROTKB|E1BZK9	1075	TRPA1 "Uncharacterized protein	0.447	0.174	0.287	1.1e-16
MGI|MGI:3522699	1125	Trpa1 "transient receptor pote	0.333	0.124	0.270	1.2e-15
UNIPROTKB|F1Q2M0	1117	TRPA1 "Uncharacterized protein	0.616	0.231	0.258	4.2e-15

FB|FBgn0035934 TrpA1 "Transient receptor potential A1" [Drosophila melanogaster (taxid:7227)]

 Score = 621 (223.7 bits), Expect = 6.1e-92, Sum P(2) = 6.1e-92
 Identities = 119/173 (68%), Positives = 138/173 (79%)

Query:     1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAIXXXXXXXXXXXXXXMDLS 60
             MSGYT T+  L+SVHSHLLDQVDKDGNTALHLATMENKP AI              +D+S
Sbjct:   653 MSGYTETIELLHSVHSHLLDQVDKDGNTALHLATMENKPHAISVLMSMGCKLVYNVLDMS 712

Query:    61 AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK 120
             AIDYAIYYK+PEAALAMVTH  R  E+M+LRSDKHPCVTLAL+ASMP+VFE+VQDK ITK
Sbjct:   713 AIDYAIYYKYPEAALAMVTHEERANEVMALRSDKHPCVTLALIASMPKVFEAVQDKCITK 772

Query:   121 ANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALH 173
             ANCKKDSKSFYIKY+F+ LQC  ++ +I+EKTG++   + PIPLPALN    H
Sbjct:   773 ANCKKDSKSFYIKYSFAFLQCPFMFAKIDEKTGESITTASPIPLPALNTMVTH 825

GO:0006816 "calcium ion transport" evidence=ISS

GO:0005262 "calcium channel activity" evidence=ISS

GO:0009266 "response to temperature stimulus" evidence=NAS

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0043052 "thermotaxis" evidence=IDA;IMP

GO:0009408 "response to heat" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IDA

GO:0042745 "circadian sleep/wake cycle" evidence=IMP

GO:0007613 "memory" evidence=IMP

GO:0033038 "bitter taste receptor activity" evidence=IDA

GO:0001580 "detection of chemical stimulus involved in sensory perception of bitter taste" evidence=IMP

GO:0040040 "thermosensory behavior" evidence=IMP

GO:0007638 "mechanosensory behavior" evidence=IMP

ZFIN|ZDB-GENE-050106-1 trpa1b "transient receptor potential cation channel, subfamily A, member 1b" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
 Identities = 52/166 (31%), Positives = 78/166 (46%)

Query:     3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAIXXXXXXXXXXXXXXMDLSAI 62
             GYT TM  L + +  LLD+ ++DGNTALH+A       A+               D S +
Sbjct:   534 GYTQTMKILLAANVKLLDEKNEDGNTALHIAAQAGHVSAVLLLLDRGAEIALNDADNSFL 593

Query:    63 DYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKAN 122
               A+  +  E   A + H  R  E M+    K  CV L ++  +P  F+ + D+ IT+++
Sbjct:   594 HEAVRNERREVVNATIEHE-RCDESMTSFKAKSRCVVLDIIEFLPESFQHLLDQCITESD 652

Query:   123 CKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALN 168
                +S+ ++I YNF  LQ   I  +   KT    A     PL ALN
Sbjct:   653 HDANSQDYHIMYNFQWLQA-PIQLKKYAKTDKTKAFQ---PLAALN 694

GO:0006811 "ion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0070542 "response to fatty acid" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA

GO:0015276 "ligand-gated ion channel activity" evidence=IDA

GO:0050960 "detection of temperature stimulus involved in thermoception" evidence=IMP

GO:0050907 "detection of chemical stimulus involved in sensory perception" evidence=IDA

GO:0050974 "detection of mechanical stimulus involved in sensory perception" evidence=ISS;IMP

GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" evidence=IMP

GO:0008381 "mechanically-gated ion channel activity" evidence=ISS

UNIPROTKB|G5E522 TRPA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
 Identities = 65/249 (26%), Positives = 101/249 (40%)

Query:     1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAIXXXXXXXXXXXXXXMDLS 60
             + GYT TM  +   +    D++D++GNTALH A  E   KA+                 S
Sbjct:   527 LGGYTQTMKVILDTNLKCTDRLDEEGNTALHFAAREGHAKAVSLLLSYDADVVLNKQQAS 586

Query:    61 AIDYAIYYKFPEAALAMVTHNTRGT--EIMSLRSDKHPCVTLALVASMPRVFESVQDKSI 118
              +  AI+ K  E  L  +     G   ++ +  S  + C  + LV  +P   + + D  +
Sbjct:   587 FLHVAIHNKRKEVVLTTIRSKRWGECFKVFNHCSPTNRCPVIELVEYLPECMKVLLDFCV 646

Query:   119 TKANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALH--LAT 176
               +   K S+ ++I+YNF+ LQC    P    K G         PL  LN    H  +  
Sbjct:   647 MPSTEDKSSQDYHIEYNFTYLQC----PLEFTKKGTPVPDIVYEPLLTLNAMVQHNRIEL 702

Query:   177 ISHHFYRPTFLDRNLALFFHNCVF-VGS---NPTPTLFLQVLLHTELERNLPKFLLEKVD 232
             ++H   +   L + LA  F   V  +GS      P  FL V +   +  N    + E  D
Sbjct:   703 LNHPVCKEYLLMKWLAYGFRAHVLNLGSYCLGLFPMTFLVVSIRPGMAFNSTGIINETSD 762

Query:   233 KMEIYEYPN 241
               EI +  N
Sbjct:   763 HSEILDTKN 771

GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" evidence=IEA

GO:0050966 "detection of mechanical stimulus involved in sensory perception of pain" evidence=IEA

GO:0050955 "thermoception" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0032421 "stereocilium bundle" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RWI1 TRPA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 167 (63.8 bits), Expect = 5.1e-20, Sum P(2) = 5.1e-20
 Identities = 65/251 (25%), Positives = 100/251 (39%)

Query:     1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAIXXXXXXXXXXXXXXMDLS 60
             + GYT TM  +   +    D++D +GNTALH A  E   KA+                 S
Sbjct:   525 LGGYTQTMKVILDTNMKCTDRLDDEGNTALHFAAREGHAKAVALLLSYDANIILNKQRAS 584

Query:    61 AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHP---CVTLALVASMPRVFESVQDKS 117
              +  AI+ K  E  L  +  N R  E +   S   P   C  + +V  +P   + + D  
Sbjct:   585 FLHVAIHNKRKEVVLTTI-RNKRWEECLMTFSHYSPSNRCPVMEMVEYLPECMKVLLDFC 643

Query:   118 ITKANCKKDSKSFYIKYNFSCLQCLRIYP-EINEKTGDATAISKPIPLPALNNTALH--L 174
             +  +   K S  ++I+YNF  LQC    P E  +K      ++   PL  LN    H  +
Sbjct:   644 MMPSTEDKSSPDYHIEYNFRYLQC----PLEFTKKVALVQDVTYE-PLSTLNAMVQHNRI 698

Query:   175 ATISHHFYRPTFLDRNLALFFHNCVF-VGS---NPTPTLFLQVLLHTELERNLPKFLLEK 230
               ++H   +   L +  A  F   V  +GS      P  FL + +   +  N    + E 
Sbjct:   699 ELLNHPVCKEYLLMKWWAYGFRAHVMNLGSYCLGLLPMTFLVISIRPGMAFNSTGIINET 758

Query:   231 VDKMEIYEYPN 241
              D  EI +  N
Sbjct:   759 SDHSEILDTKN 769

GO:0016021 "integral to membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

UNIPROTKB|O75762 TRPA1 "Transient receptor potential cation channel subfamily A member 1" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
 Identities = 66/251 (26%), Positives = 106/251 (42%)

Query:     1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAIXXXXXXXXXXXXXXMDLS 60
             M GYT TM  +   +    D++D+DGNTALH A  E   KA+                 S
Sbjct:   523 MGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIVLNKQQAS 582

Query:    61 AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHP---CVTLALVASMPRVFESVQDKS 117
              +  A++ K  E  L ++  + R  E + + S   P   C    ++  +P   + + D  
Sbjct:   583 FLHLALHNKRKEVVLTII-RSKRWDECLKIFSHNSPGNKCPITEMIEYLPECMKVLLDFC 641

Query:   118 ITKANCKKDSKSFYIKYNFSCLQCLRIYP-EINEKTGDATAISKPIP-LPAL-NNTALHL 174
             +  +   K  + +YI+YNF  LQC    P E  +KT     I +P+  L A+  N  + L
Sbjct:   642 MLHSTEDKSCRDYYIEYNFKYLQC----PLEFTKKTPTQDVIYEPLTALNAMVQNNRIEL 697

Query:   175 ATISHHFYRPTFLDRNLALFFH-NCVFVGS---NPTPTLFLQVLLHTELERNLPKFLLEK 230
               ++H   +   L + LA  F  + + +GS      P   L V +   +  N    + E 
Sbjct:   698 --LNHPVCKEYLLMKWLAYGFRAHMMNLGSYCLGLIPMTILVVNIKPGMAFNSTGIINET 755

Query:   231 VDKMEIYEYPN 241
              D  EI +  N
Sbjct:   756 SDHSEILDTTN 766

GO:0005262 "calcium channel activity" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0032421 "stereocilium bundle" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

GO:0050955 "thermoception" evidence=IEA

GO:0050966 "detection of mechanical stimulus involved in sensory perception of pain" evidence=IEA

GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" evidence=IEA

GO:0015267 "channel activity" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

ZFIN|ZDB-GENE-050105-6 trpa1a "transient receptor potential cation channel, subfamily A, member 1a" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
 Identities = 52/170 (30%), Positives = 79/170 (46%)

Query:     3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAIXXXXXXXXXXXXXXMDLSAI 62
             GYT TM  L + +  LL++ D DGNTALHLA       A+               D S +
Sbjct:   534 GYTQTMDTLLTSNIKLLNKTDGDGNTALHLAARAGHVAAVRLLLYRGAKIILNKNDASFL 593

Query:    63 DYAIYYKFPEAALAMVTHNTRGTEIMSL---RSDKHPCVTLALVASMPRVFESVQDKSIT 119
               A++    E    MV  + R  E M+     S K  C+ + ++  +P  F+ + D  I 
Sbjct:   594 HEAVHNARREVT-NMVIESDRCEEAMTTYKPNSTKR-CIVMDMIEFLPESFKHLLDTCIR 651

Query:   120 KANCKKDSKSFYIKYNFSCLQCLRIYPEIN-EKTGDATAISKPIPLPALN 168
             ++    +  ++YI+YNF  LQ    +P  N +KTG    ++   PL ALN
Sbjct:   652 ESEEDVNCTNYYIEYNFRWLQ----HPLQNLKKTGMEKDMAYK-PLSALN 696

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0070542 "response to fatty acid" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA

GO:0050974 "detection of mechanical stimulus involved in sensory perception" evidence=IMP

GO:0015276 "ligand-gated ion channel activity" evidence=IDA

GO:0009593 "detection of chemical stimulus" evidence=IDA

GO:0050960 "detection of temperature stimulus involved in thermoception" evidence=IMP

GO:0008381 "mechanically-gated ion channel activity" evidence=IMP

UNIPROTKB|E1C7Y7 TRPA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
 Identities = 57/198 (28%), Positives = 89/198 (44%)

Query:     3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAIXXXXXXXXXXXXXXMDLSAI 62
             GYT TM  +   +    D+VD++GNTALHLA  E   KA+                 S  
Sbjct:   530 GYTRTMQIILDTNVKCTDKVDEEGNTALHLAAKEGHAKAVRLLLDYGAKILLNKAVASFF 589

Query:    63 DYAIYYKFPEAALAMVTHNTRGTEIMSLR--SDKHPCVTLALVASMPRVFESVQDKSITK 120
               AI+ +  +    ++ H      +++    S  + C  L ++  +P  F+ V D  I +
Sbjct:   590 HEAIHNRRKDVVSTVILHKRWEEAVLTFSHYSSANKCPLLEMIEYLPDSFKLVLDNCIIE 649

Query:   121 ANCKKDSKSFYIKYNFSCLQCLRIYP-EINEKTGDATAISKPIPLPALNNTALH--LATI 177
             ++ +K S+ FYI+YNF  LQC    P  +N K  +A  I    PL  LN    H  +  +
Sbjct:   650 SSEEKTSRDFYIEYNFRYLQC----PLALNRKLKEAEDIFYE-PLAILNAMVRHNRMELL 704

Query:   178 SHHFYRPTFLDRNLALFF 195
             SH   +   L + +A  F
Sbjct:   705 SHPVCKEYLLMKWMAYGF 722

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BZK9 TRPA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
 Identities = 57/198 (28%), Positives = 89/198 (44%)

Query:     3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAIXXXXXXXXXXXXXXMDLSAI 62
             GYT TM  +   +    D+VD++GNTALHLA  E   KA+                 S  
Sbjct:   530 GYTRTMQIILDTNVKCTDKVDEEGNTALHLAAKEGHAKAVRLLLDYGAKILLNKAVASFF 589

Query:    63 DYAIYYKFPEAALAMVTHNTRGTEIMSLR--SDKHPCVTLALVASMPRVFESVQDKSITK 120
               AI+ +  +    ++ H      +++    S  + C  L ++  +P  F+ V D  I +
Sbjct:   590 HEAIHNRRKDVVSTVILHKRWEEAVLTFSHYSSANKCPLLEMIEYLPDSFKLVLDNCIIE 649

Query:   121 ANCKKDSKSFYIKYNFSCLQCLRIYP-EINEKTGDATAISKPIPLPALNNTALH--LATI 177
             ++ +K S+ FYI+YNF  LQC    P  +N K  +A  I    PL  LN    H  +  +
Sbjct:   650 SSEEKTSRDFYIEYNFRYLQC----PLALNRKLKEAEDIFYE-PLAILNAMVRHNRMELL 704

Query:   178 SHHFYRPTFLDRNLALFF 195
             SH   +   L + +A  F
Sbjct:   705 SHPVCKEYLLMKWMAYGF 722

GO:0016021 "integral to membrane" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0032421 "stereocilium bundle" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

GO:0050955 "thermoception" evidence=IEA

GO:0050966 "detection of mechanical stimulus involved in sensory perception of pain" evidence=IEA

GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" evidence=IEA

MGI|MGI:3522699 Trpa1 "transient receptor potential cation channel, subfamily A, member 1" [Mus musculus (taxid:10090)]

 Score = 156 (60.0 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 39/144 (27%), Positives = 64/144 (44%)

Query:     1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAIXXXXXXXXXXXXXXMDLS 60
             M GYT TM  +   +    D++D++GNTALH A  E   KA+                 S
Sbjct:   524 MGGYTQTMKVILDTNLKCTDRLDEEGNTALHFAAREGHAKAVAMLLSYNADILLNKKQAS 583

Query:    61 AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHP---CVTLALVASMPRVFESVQDKS 117
              +  A++ K  E  L  +  N R  E + + +   P   C  + +V  +P   + + D  
Sbjct:   584 FLHIALHNKRKEVVLTTI-RNKRWDECLQVFTHNSPSNRCPIMEMVEYLPECMKVLLDFC 642

Query:   118 ITKANCKKDSKSFYIKYNFSCLQC 141
             +  +   K  + ++I+YNF  LQC
Sbjct:   643 MIPSTEDKSCQDYHIEYNFKYLQC 666

GO:0005216 "ion channel activity" evidence=IDA;IMP

GO:0005262 "calcium channel activity" evidence=IMP;IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IMP;IDA

GO:0009409 "response to cold" evidence=IMP;IDA

GO:0015267 "channel activity" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISS

GO:0032421 "stereocilium bundle" evidence=IDA

GO:0034220 "ion transmembrane transport" evidence=IDA;IMP

GO:0042493 "response to drug" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IMP

GO:0048265 "response to pain" evidence=IDA;IMP

GO:0050896 "response to stimulus" evidence=IEA

GO:0050955 "thermoception" evidence=IDA

GO:0050966 "detection of mechanical stimulus involved in sensory perception of pain" evidence=IMP

GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" evidence=IDA;IMP

GO:0055085 "transmembrane transport" evidence=IDA

GO:0070588 "calcium ion transmembrane transport" evidence=IMP;IDA

UNIPROTKB|F1Q2M0 TRPA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 186 (70.5 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
 Identities = 71/275 (25%), Positives = 111/275 (40%)

Query:     1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAIXXXXXXXXXXXXXXMDLS 60
             + GYT TM  +   +    D +D++GNTALH A  E   KA+                 S
Sbjct:   524 LGGYTQTMKVILDTNLKCTDLLDEEGNTALHFAAREGHAKAVALLLSYDAAIVLNKQQAS 583

Query:    61 AIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHP---CVTLALVASMPRVFESVQDKS 117
              +  AI+ K  E  L  +  N R  E + + S   P   C  L +V  +P   + + D  
Sbjct:   584 FLHVAIHNKRKEVVLTTIK-NKRWEECLEVFSHYSPSNGCPVLEMVEYLPECMKVLLDCC 642

Query:   118 ITKANCKKDSKSFYIKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALNNTALH--LA 175
             I  +   K  + ++I+YNF+ LQC   + +    T D T      PL  LN    H  + 
Sbjct:   643 IIPSTRDKSCEDYHIEYNFTYLQCPLEFTKKVTPTQDVTYE----PLTTLNAMVQHNRIE 698

Query:   176 TISHHFYRPTFLDRNLALFFHNCVF-VGS---NPTPTLFLQVLLHTELERNLPKFLLEKV 231
              ++H   +   L + LA  F   +  +GS      P  FL V +   +  N    + E  
Sbjct:   699 LLNHPVCKEYLLMKWLAYGFRAHIMNLGSYCLGLLPMTFLVVSIKPGMAFNSTGIINETT 758

Query:   232 DKMEIYEYPNECKGKLGFLDLVIRKWF--CNPFTE 264
             D  EI +  N    K+  + + +   F  C   T+
Sbjct:   759 DHSEILDTKNSYSIKVCMILVFLSSIFGYCKEVTQ 793

GO:0016021 "integral to membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7Z020	TRPA1_DROME	No assigned EC number	0.7283	0.4095	0.1327	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	420
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.003
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 19  LDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAA 74
           ++  DKDGNT LHLA        + LLL     +   +    + +  A      E  
Sbjct: 66  VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 15 HSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEA 73
          +   ++  D DG T LHLA      + + LLL     +   +    + +  A      + 
Sbjct: 29 NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDV 88

Query: 74 A 74
           
Sbjct: 89 V 89

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 20 DQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMD-LSAIDYAIYYKFPEAALAMV 78
          +  D+DG T LHLA      + + LLL     +     D  + +  A      E    ++
Sbjct: 1  NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 79 THN 81
             
Sbjct: 61 EKG 63

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	420
KOG0510|consensus	929		100.0
KOG0510|consensus	929		99.86
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.69
KOG4412|consensus	226		99.58
KOG4412|consensus	226		99.55
KOG3676|consensus	782		99.52
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.49
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
PHA02791	284	ankyrin-like protein; Provisional	99.44
PHA02875	413	ankyrin repeat protein; Provisional	99.43
PHA02741	169	hypothetical protein; Provisional	99.41
PHA02946	446	ankyin-like protein; Provisional	99.41
PHA02791	284	ankyrin-like protein; Provisional	99.4
KOG0512|consensus	228		99.39
PHA02875	413	ankyrin repeat protein; Provisional	99.38
PHA02884	300	ankyrin repeat protein; Provisional	99.38
PHA02795	437	ankyrin-like protein; Provisional	99.38
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.36
PHA02878	477	ankyrin repeat protein; Provisional	99.35
PHA02743	166	Viral ankyrin protein; Provisional	99.33
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.33
PHA02736	154	Viral ankyrin protein; Provisional	99.32
PHA02859	209	ankyrin repeat protein; Provisional	99.31
KOG0509|consensus	600		99.31
PHA02874	434	ankyrin repeat protein; Provisional	99.31
PHA02878	477	ankyrin repeat protein; Provisional	99.31
KOG0508|consensus	615		99.28
PHA02743	166	Viral ankyrin protein; Provisional	99.27
PHA02874	434	ankyrin repeat protein; Provisional	99.27
KOG0514|consensus	452		99.26
PHA03095	471	ankyrin-like protein; Provisional	99.25
PHA03095	471	ankyrin-like protein; Provisional	99.25
PHA02798	489	ankyrin-like protein; Provisional	99.24
PHA03100	480	ankyrin repeat protein; Provisional	99.24
PHA02741	169	hypothetical protein; Provisional	99.24
PHA02798	489	ankyrin-like protein; Provisional	99.24
KOG0509|consensus	600		99.22
PHA02859	209	ankyrin repeat protein; Provisional	99.22
PHA03100	480	ankyrin repeat protein; Provisional	99.22
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.2
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.2
KOG0195|consensus	448		99.2
PHA02876	682	ankyrin repeat protein; Provisional	99.19
KOG0508|consensus	615		99.18
PHA02989	494	ankyrin repeat protein; Provisional	99.17
KOG0514|consensus	452		99.16
PHA02989	494	ankyrin repeat protein; Provisional	99.15
KOG4214|consensus	117		99.14
KOG4177|consensus	1143		99.14
PHA02795	437	ankyrin-like protein; Provisional	99.14
PHA02946	446	ankyin-like protein; Provisional	99.12
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.11
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.1
KOG0512|consensus	228		99.08
PHA02884	300	ankyrin repeat protein; Provisional	99.08
PHA02917	661	ankyrin-like protein; Provisional	99.07
KOG0502|consensus	296		99.06
PHA02876	682	ankyrin repeat protein; Provisional	99.05
PHA02792	631	ankyrin-like protein; Provisional	99.01
KOG0195|consensus	448		99.0
PHA02730	672	ankyrin-like protein; Provisional	99.0
KOG4177|consensus	1143		98.99
KOG0502|consensus	296		98.99
PHA02736	154	Viral ankyrin protein; Provisional	98.98
PHA02917	661	ankyrin-like protein; Provisional	98.97
PHA02730	672	ankyrin-like protein; Provisional	98.97
KOG0515|consensus	752		98.96
PHA02792	631	ankyrin-like protein; Provisional	98.96
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.96
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	98.95
KOG0522|consensus	560		98.91
KOG0507|consensus	854		98.87
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.86
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	98.85
KOG1710|consensus	396		98.82
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	98.81
KOG0507|consensus	854		98.73
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	98.73
TIGR00870	743	trp transient-receptor-potential calcium channel p	98.7
PF13606	30	Ank_3: Ankyrin repeat	98.68
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.67
KOG0505|consensus	527		98.59
KOG4214|consensus	117		98.53
KOG1710|consensus	396		98.49
KOG0818|consensus	669		98.44
KOG0515|consensus	752		98.42
KOG0505|consensus	527		98.41
KOG0705|consensus	749		98.39
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.36
KOG0783|consensus	1267		98.34
KOG0506|consensus	622		98.31
KOG2384|consensus	223		98.28
KOG3676|consensus	782		98.26
KOG3609|consensus	822		98.25
KOG4369|consensus	2131		98.19
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.03
KOG4369|consensus	2131		98.0
KOG0782|consensus	1004		97.9
PF13606	30	Ank_3: Ankyrin repeat	97.84
KOG0783|consensus	1267		97.56
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	97.54
PLN03223	1634	Polycystin cation channel protein; Provisional	97.21
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.13
KOG0521|consensus	785		97.13
PF08016	425	PKD_channel: Polycystin cation channel; InterPro:	97.13
KOG0511|consensus	516		97.12
KOG0782|consensus	1004		97.1
KOG0818|consensus	669		96.98
KOG0520|consensus	975		96.86
KOG0506|consensus	622		96.86
KOG0521|consensus	785		96.71
KOG0511|consensus	516		96.7
KOG2505|consensus	591		96.3
KOG0520|consensus	975		96.02
KOG3599|consensus	798		95.22
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.0
KOG0522|consensus	560		94.54
KOG2384|consensus	223		93.35
PF00520	200	Ion_trans: Ion transport protein calcium channel s	93.12
KOG0705|consensus	749		92.83
KOG3609|consensus	822		91.89

>KOG0510|consensus

Probab=100.00  E-value=6.7e-52  Score=434.65  Aligned_cols=294  Identities=25%  Similarity=0.344  Sum_probs=240.0

Q ss_pred             CCCHHHHHHHHh-cCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcccc----cCCCCcHHHHHHHcCCHHHHHH
Q psy8764           2 SGYTNTMVHLNS-VHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLY----NCMDLSAIDYAIYYKFPEAALA   76 (420)
Q Consensus         2 ~G~~e~ve~LL~-~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i~~----n~~g~TpLh~A~~~g~~evv~~   76 (420)
                      .|..++|+.||+ .+..++|+.|..|+||||+|+++||.++|++||++||....    |.+|.||||.|+.+|+..+|+.
T Consensus       316 yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~  395 (929)
T KOG0510|consen  316 YGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQK  395 (929)
T ss_pred             cccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHH
Confidence            588999999999 67778999999999999999999999999999999998843    8999999999999999999999


Q ss_pred             HHhCCCCccc----------------h--hcccCCCCcchHHHHHhhCHHHHHHHhhccccccccCCCCcceeeeechhh
Q psy8764          77 MVTHNTRGTE----------------I--MSLRSDKHPCVTLALVASMPRVFESVQDKSITKANCKKDSKSFYIKYNFSC  138 (420)
Q Consensus        77 Ll~~~~~~~~----------------~--~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~~~~~~~~~~~~i~y~f~~  138 (420)
                      |+.||..-..                +  .....+.+.||..++++++|++++.++|.|+.++.+++++           
T Consensus       396 Li~~Ga~I~~~n~~g~SA~~~~~~~~~p~~~~~~~~n~c~~~~~i~~~pe~~e~vlD~c~l~~~e~~~~-----------  464 (929)
T KOG0510|consen  396 LISHGADIGVKNKKGKSAFDTRPDRCLPVFVHRSPFNKCPTTELIEPLPECFEIVLDFCILKSQERKDS-----------  464 (929)
T ss_pred             HHHcCCceeeccccccccccccccccccHHHhhCCCCCcchhhhhccchHHHHHHHHHHHHHHhhccCC-----------
Confidence            9999765421                1  1112223789999999999999999999999999888765           


Q ss_pred             ccccccccccccccCCCCCCCCCCcchhhHHHHHH-------------HHHhhhhhhHHHHHHHHHHHhhhcccceeeee
Q psy8764         139 LQCLRIYPEINEKTGDATAISKPIPLPALNNTALH-------------LATISHHFYRPTFLDRNLALFFHNCVFVGSNP  205 (420)
Q Consensus       139 Lq~p~~~~~~~~~~~~~~~~~~~~pl~~Ln~mv~h-------------LL~~KW~~yg~~~~~~nl~~y~~~~~~lfl~~  205 (420)
                         |.           +.+...+.   .+|.||++             +|.|||++||+++|+.||++|+     +|++|
T Consensus       465 ---~~-----------~~Q~~~~~---~~~~mv~~~~~eLL~HPL~ssfL~mKW~~~g~~~~~~nL~~Y~-----lFlv~  522 (929)
T KOG0510|consen  465 ---PT-----------PLQDEAAP---ILNIMVDKEQIELLEHPLSSSFLFMKWNRYGKYFHLNNLLIYS-----LFLVS  522 (929)
T ss_pred             ---CC-----------hhhhhhhh---HHHHHhhhhHHHHhcChhHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHH
Confidence               21           11111121   67778776             4559999999999999999999     99999


Q ss_pred             cchhhhhhhhhhhhhhcchhhHHhhccccceeecCCCCCcccchhhhhhhhhccCccchhhhhhhhccCCCcchhhhHHH
Q psy8764         206 TPTLFLQVLLHTELERNLPKFLLEKVDKMEIYEYPNECKGKLGFLDLVIRKWFCNPFTEDAIDMVLESNGNDVFTDEIDK  285 (420)
Q Consensus       206 lT~~~~qv~l~t~le~~lp~~~~~~vd~~~~~~ypn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  285 (420)
                      +|.++    +|+    |-|..|                 ++.|                                     
T Consensus       523 lT~Yv----~~~----~~~~~~-----------------n~~~-------------------------------------  540 (929)
T KOG0510|consen  523 LTIYV----LLI----KAGMAF-----------------NSSG-------------------------------------  540 (929)
T ss_pred             HHHHH----HHh----cccccc-----------------cccc-------------------------------------
Confidence            99976    111    111111                 0000                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q psy8764         286 LKRKLNEIQIHLDHQFMFLRLIVHKMDIKTETDERDEGTSSNKELHPLLYICGTAISTYMLFSVAVQSVQIYQQKWHYLF  365 (420)
Q Consensus       286 ~k~rlk~~~~~~~~q~~l~kli~~~~ei~sea~d~d~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~E~~Ql~~~~~~Yf~  365 (420)
                                               -||.++++|  .++..+..++..+.+|+++|+++++++++||++|+|||+++||.
T Consensus       541 -------------------------~~~~~~~s~--~se~lr~~~t~~i~~~~ili~~~i~~~~~~E~iQifqqk~~Y~~  593 (929)
T KOG0510|consen  541 -------------------------TEIISKTSD--HSEILRNNNTMLIAFCMILIFTSIILGILRECIQIFQQKRHYFM  593 (929)
T ss_pred             -------------------------ceeehhccc--hhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                     134445444  33334445688899999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHHhhhcc
Q psy8764         366 DPTNIVALLLFFSATIMIVPLFTKGRYMTDYQISFTSLTVFLSWLTLLLNLQSL  419 (420)
Q Consensus       366 d~~N~~ew~ly~~si~~v~~~~~~~~~~~~~qw~~ga~aifl~W~~lll~l~rf  419 (420)
                      |++|++||++|++++++|.|.+.  ..+.+|||++||+||||+||||+|++|||
T Consensus       594 ~i~Nimew~iyts~li~v~~~~~--~~~~~~Q~~laa~aV~l~W~nllLmi~~~  645 (929)
T KOG0510|consen  594 DIENIMEWFIYTSALITVYPLFF--EITAHLQWVLAAFAVLLGWMNLLLMIGRF  645 (929)
T ss_pred             hhHHHHHHHHHhhhhheeehhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999999999999999985  25679999999999999999999999998

>KOG0510|consensus

Probab=99.86  E-value=3.7e-22  Score=211.11  Aligned_cols=106  Identities=29%  Similarity=0.440  Sum_probs=85.2

Q ss_pred             hhhhhhhhhhhhhcchhhHHhhccccceeecCCC-------CCcccchhhhhhhhhccCccchhhhhhhhccCCCcchhh
Q psy8764         209 LFLQVLLHTELERNLPKFLLEKVDKMEIYEYPNE-------CKGKLGFLDLVIRKWFCNPFTEDAIDMVLESNGNDVFTD  281 (420)
Q Consensus       209 ~~~qv~l~t~le~~lp~~~~~~vd~~~~~~ypn~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (420)
                      +||||+|||.+|+|||-||+.|||+++.++|||.       |++. |.. ...-++++...    .++...++.+...+.
T Consensus       769 lamQv~L~s~iE~~L~~~~l~~~~k~~~~~y~~~~~l~~s~pr~~-~~~-~~~~~~~~~~~----~~~~~s~~~d~~~e~  842 (929)
T KOG0510|consen  769 LAMQVNLHSRIEQKLPHHFLQRVDKKSTIVYPNKQRLMNSYPRSG-GLL-FQSALPLGGNR----VLFGMSDSSDMSTEK  842 (929)
T ss_pred             HHHHHHHHHHHHHHccchhHhhhhhcceEeccccccccccCCCCC-cee-eeeeeccCCcc----eecccCCCcchhHHH
Confidence            9999999999999999999999999999999998       5442 211 11112222111    112234567889999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccC
Q psy8764         282 EIDKLKRKLNEIQIHLDHQFMFLRLIVHKMDIKTETDER  320 (420)
Q Consensus       282 e~~~~k~rlk~~~~~~~~q~~l~kli~~~~ei~sea~d~  320 (420)
                      |+.+|++++++++..+++||.++|||+++|+|.+|..|.
T Consensus       843 ~~~rq~~~l~~~~~~l~~q~~~~rli~~~~~iltek~d~  881 (929)
T KOG0510|consen  843 ELSRQQEPLSDAGFQLELQHPLLRLIVEKMEILTEKCDQ  881 (929)
T ss_pred             HHHHhhhhhhhhhhhhhccCchhhhhhhhheechhhhcc
Confidence            999999999999999999999999999999999998884

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.69  E-value=3e-16  Score=173.13  Aligned_cols=195  Identities=9%  Similarity=0.020  Sum_probs=118.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcC--------------CCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVD--------------KDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAI   66 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D--------------~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~   66 (420)
                      +|+.+++++|++.|+ ++|..+              ..|.||||+|+..|+.+++++|+++|||+ ..|..|+||||+|+
T Consensus       138 ~~~~eiVklLL~~GA-dv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~  216 (743)
T TIGR00870       138 RQNYEIVKLLLERGA-SVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLV  216 (743)
T ss_pred             hCCHHHHHHHHhCCC-CCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHH
Confidence            689999999999875 666542              36999999999999999999999999999 89999999999999


Q ss_pred             HcC---------CHHHHHHHHhCCCC---ccchhc-ccCCCCcchHHHHHhhCHHHHHHHhhccccc--cccCCCCccee
Q psy8764          67 YYK---------FPEAALAMVTHNTR---GTEIMS-LRSDKHPCVTLALVASMPRVFESVQDKSITK--ANCKKDSKSFY  131 (420)
Q Consensus        67 ~~g---------~~evv~~Ll~~~~~---~~~~~~-~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~--~~~~~~~~~~~  131 (420)
                      ..+         ...+.++++...+.   ...+.. .+.++.+....+.....+++++.+++.-...  -...+.++...
T Consensus       217 ~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a~~~~~~~~  296 (743)
T TIGR00870       217 MENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLL  296 (743)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeeccCcchHhH
Confidence            987         23344555544322   211111 1222233345566677788888888743211  11223333333


Q ss_pred             eeechhhccccccccccccccCCCCCCCC------CCcchhhH---HHHHHHHHhhhhhhHHHHHHHHHHHhhhccccee
Q psy8764         132 IKYNFSCLQCLRIYPEINEKTGDATAISK------PIPLPALN---NTALHLATISHHFYRPTFLDRNLALFFHNCVFVG  202 (420)
Q Consensus       132 i~y~f~~Lq~p~~~~~~~~~~~~~~~~~~------~~pl~~Ln---~mv~hLL~~KW~~yg~~~~~~nl~~y~~~~~~lf  202 (420)
                      -.|+++.++.-   ++..    .......      ..|....-   +-++.|+..||..|++..++.++.+|+     ++
T Consensus       297 ~~~~~~~~~~~---~~~~----~~~~ll~~~~~~~~~p~~~~~~~~~P~~~l~~~kw~pf~kf~~~~~~~~~f-----l~  364 (743)
T TIGR00870       297 SLYWLEELDGW---RRKQ----SVLELIVVFVIGLKFPELSDMYLIAPLSRLGQFKWKPFIKFIFHSASYLYF-----LY  364 (743)
T ss_pred             hhhccccCCcc---cccc----cHHHHHHHHHHhhcChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence            33333333210   0000    0000000      00111100   001116778999999998889999999     88


Q ss_pred             eeecchh
Q psy8764         203 SNPTPTL  209 (420)
Q Consensus       203 l~~lT~~  209 (420)
                      ++.+|+.
T Consensus       365 l~~~~~~  371 (743)
T TIGR00870       365 LIIFTSV  371 (743)
T ss_pred             HHHHHHH
Confidence            8877663

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4412|consensus

Probab=99.58  E-value=7.7e-15  Score=132.53  Aligned_cols=82  Identities=20%  Similarity=0.146  Sum_probs=74.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHC-CCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSL-NCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~-Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      -||.+++++|++.....+|..|+.||||||.||..|+.++|+-|+.+ |+|+ ..++.|+||||+|+..|+.|++++|+.
T Consensus        48 ~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle  127 (226)
T KOG4412|consen   48 FGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLE  127 (226)
T ss_pred             cCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHh
Confidence            48999999999765556888999999999999999999999999988 9999 899999999999999999999999999


Q ss_pred             CCCC
Q psy8764          80 HNTR   83 (420)
Q Consensus        80 ~~~~   83 (420)
                      +++-
T Consensus       128 ~ga~  131 (226)
T KOG4412|consen  128 KGAL  131 (226)
T ss_pred             cCCC
Confidence            8753

>KOG4412|consensus

Probab=99.55  E-value=2e-14  Score=129.93  Aligned_cols=114  Identities=13%  Similarity=0.091  Sum_probs=97.6

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+-|+|+.|+.....++|.+++.|.|||||||..|..+++++|+++||.+ ++|+.|+||||-|+.-|+.+++++|+..
T Consensus        82 ~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~  161 (226)
T KOG4412|consen   82 NGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQ  161 (226)
T ss_pred             cCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhc
Confidence            588999999999855689999999999999999999999999999999999 9999999999999999999999999988


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      ++-.+..   +..+.+..+.++.+.+|+++..+.....
T Consensus       162 ~a~~n~q---Dk~G~TpL~~al~e~~~d~a~lLV~~gA  196 (226)
T KOG4412|consen  162 GAPLNTQ---DKYGFTPLHHALAEGHPDVAVLLVRAGA  196 (226)
T ss_pred             CCCCCcc---cccCccHHHHHHhccCchHHHHHHHhcc
Confidence            7433322   2222444667788999999988876554

>KOG3676|consensus

Probab=99.52  E-value=3.8e-13  Score=143.80  Aligned_cols=193  Identities=12%  Similarity=0.036  Sum_probs=113.7

Q ss_pred             CCHHHHHHHHhcCCCCCCCc---------C--------------CCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCC
Q psy8764           3 GYTNTMVHLNSVHSHLLDQV---------D--------------KDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMD   58 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~---------D--------------~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g   58 (420)
                      -+.++|+.|++.++ ++++.         |              -.|..||-+||..|..++|++|+++|||+ .+|..|
T Consensus       195 ~~~~~V~lLl~~gA-DV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~G  273 (782)
T KOG3676|consen  195 RDAELVRLLLAAGA-DVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNG  273 (782)
T ss_pred             ccHHHHHHHHHcCC-chhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCC
Confidence            45678888888765 44321         1              13678888888888888888888888888 888888


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCccchhcccCCCCcchH-HHHHhhCHHHHHHHhhccccccccCCCCcceeeeechh
Q psy8764          59 LSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVT-LALVASMPRVFESVQDKSITKANCKKDSKSFYIKYNFS  137 (420)
Q Consensus        59 ~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~~~~~~~~~~-~~li~~~p~~~~~lLD~ci~~~~~~~~~~~~~i~y~f~  137 (420)
                      .|.||..+.+-..++-..++.+++.  +.....+..+-+|. ++....--++++.++.+-  +...=...+-..-.|+..
T Consensus       274 NTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~--k~~~W~YGpvtsslYpL~  349 (782)
T KOG3676|consen  274 NTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLTPLTLAAKLGKKEMFQHILERR--KFTDWAYGPVTSSLYPLN  349 (782)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCChHHHHHHhhhHHHHHHHHHhh--cccceeecccccccccch
Confidence            8888888888778888888888776  11111222233332 343334445556666531  000000011111122222


Q ss_pred             hccccccccccccccCCCCCCCCCCcchhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccceeeeecch
Q psy8764         138 CLQCLRIYPEINEKTGDATAISKPIPLPALNNTALHLATISHHFYRPTFLDRNLALFFHNCVFVGSNPTPT  208 (420)
Q Consensus       138 ~Lq~p~~~~~~~~~~~~~~~~~~~~pl~~Ln~mv~hLL~~KW~~yg~~~~~~nl~~y~~~~~~lfl~~lT~  208 (420)
                      -+|.-..  +.+..+ ---.+.+.+++..+-..++.||..||.+||++.++.++.+|+     ++.+.+|.
T Consensus       350 ~iDT~~n--~~SvLe-ivvyg~~~eHl~Ll~~~i~~LL~~KW~~f~k~~f~~~~~~~~-----~y~i~ft~  412 (782)
T KOG3676|consen  350 SIDTIGN--ENSVLE-IVVYGIKNEHLELLDGPIEELLEDKWKAFGKKQFFMSLLIYL-----LYMICFTL  412 (782)
T ss_pred             hcccccc--hhhhhh-hhhcCCcHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHH
Confidence            2221100  000000 000112333444444455558889999999998889999999     99888776

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.49  E-value=1.6e-13  Score=110.78  Aligned_cols=77  Identities=22%  Similarity=0.227  Sum_probs=69.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.+. .++.    |+||||+||..|+.+++++|+++|+++ ..|..|+||||+|+.+|+.++++.|+++
T Consensus         7 ~~~~~~~~~ll~~~~-~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~   81 (89)
T PF12796_consen    7 NGNLEILKFLLEKGA-DINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEH   81 (89)
T ss_dssp             TTTHHHHHHHHHTTS-TTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCcC-CCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            689999999999664 4554    999999999999999999999999999 8899999999999999999999999998


Q ss_pred             CCC
Q psy8764          81 NTR   83 (420)
Q Consensus        81 ~~~   83 (420)
                      +..
T Consensus        82 g~~   84 (89)
T PF12796_consen   82 GAD   84 (89)
T ss_dssp             TT-
T ss_pred             CCC
Confidence            754

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=5e-14  Score=105.20  Aligned_cols=55  Identities=25%  Similarity=0.248  Sum_probs=33.3

Q ss_pred             HHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHH
Q psy8764          11 LNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYA   65 (420)
Q Consensus        11 LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A   65 (420)
                      ||++++.++|.+|..|+||||+||+.|+.++|++|++.|+++ .+|+.|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            567776689999999999999999999999999999999999 9999999999998

>PHA02791 ankyrin-like protein; Provisional

Probab=99.44  E-value=1.1e-12  Score=129.29  Aligned_cols=126  Identities=13%  Similarity=0.032  Sum_probs=89.6

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++ +++..  +|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+.+|+.+++++|+.+
T Consensus        40 ~g~~eiv~~Ll~~ga-~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~  116 (284)
T PHA02791         40 DNNVRLVCTLLNAGA-LKNLL--ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK  116 (284)
T ss_pred             cCCHHHHHHHHHCcC-CCcCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            588899999998765 55554  4789999999999999999999999998 8888899999999999999999999988


Q ss_pred             CCCccchhcccCCCCcc-hHHHHHhhCHHHHHHHhhccccccccCCCCcceeee
Q psy8764          81 NTRGTEIMSLRSDKHPC-VTLALVASMPRVFESVQDKSITKANCKKDSKSFYIK  133 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~li~~~p~~~~~lLD~ci~~~~~~~~~~~~~i~  133 (420)
                      +...+..   ...+..+ .+.+......++++.+++++....+...+.+..|+.
T Consensus       117 gadin~~---~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~A  167 (284)
T PHA02791        117 NWRLMFY---GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHIT  167 (284)
T ss_pred             CCCcCcc---CCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHH
Confidence            7543221   1111223 344666777888888887653221111234555555

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.43  E-value=1.2e-12  Score=134.52  Aligned_cols=112  Identities=15%  Similarity=0.078  Sum_probs=54.1

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      |+.++++.|++.|+ +++..|.+|.||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+..|+.++++.|+.++
T Consensus       113 ~~~~iv~~Ll~~ga-d~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g  191 (413)
T PHA02875        113 KKLDIMKLLIARGA-DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG  191 (413)
T ss_pred             CCHHHHHHHHhCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            44555555555443 44555555555555555555555555555555555 44555555555555555555555555554


Q ss_pred             CCccchhcccCCCCcchHH-HHHhhCHHHHHHHhhccc
Q psy8764          82 TRGTEIMSLRSDKHPCVTL-ALVASMPRVFESVQDKSI  118 (420)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~-~li~~~p~~~~~lLD~ci  118 (420)
                      .......   ..+..+++. +.....+++++.++++..
T Consensus       192 a~~n~~~---~~~~~t~l~~A~~~~~~~iv~~Ll~~ga  226 (413)
T PHA02875        192 ANIDYFG---KNGCVAALCYAIENNKIDIVRLFIKRGA  226 (413)
T ss_pred             CCCCcCC---CCCCchHHHHHHHcCCHHHHHHHHHCCc
Confidence            4332211   111122232 444445555555555443

>PHA02741 hypothetical protein; Provisional

Probab=99.41  E-value=2.3e-12  Score=117.11  Aligned_cols=117  Identities=15%  Similarity=0.180  Sum_probs=88.5

Q ss_pred             CCCHHHHHHHHhc-----CCCCCCCcCCCCChHHHHHHHcCC----HHHHHHHHHCCCcc-cccC-CCCcHHHHHHHcCC
Q psy8764           2 SGYTNTMVHLNSV-----HSHLLDQVDKDGNTALHLATMENK----PKAICLLLSLNCKL-LYNC-MDLSAIDYAIYYKF   70 (420)
Q Consensus         2 ~G~~e~ve~LL~~-----~~~~in~~D~~G~TpLHlAa~~g~----~~vV~lLL~~Ga~i-~~n~-~g~TpLh~A~~~g~   70 (420)
                      .|+.++++.|+..     .+.+++.+|..|+||||+|+..|+    .+++++|+++|+++ .++. .|.||||+|+.+|+
T Consensus        31 ~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~  110 (169)
T PHA02741         31 CGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRD  110 (169)
T ss_pred             cCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCC
Confidence            5899999988642     234689999999999999999999    58899999999999 7774 89999999999999


Q ss_pred             HHHHHHHHhC-CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccccc
Q psy8764          71 PEAALAMVTH-NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKA  121 (420)
Q Consensus        71 ~evv~~Ll~~-~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~~  121 (420)
                      .++++.|+.. +.+....   +..+.+....+......++++.+++...+.+
T Consensus       111 ~~iv~~Ll~~~g~~~~~~---n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~~  159 (169)
T PHA02741        111 HDLAEWLCCQPGIDLHFC---NADNKSPFELAIDNEDVAMMQILREIVATSR  159 (169)
T ss_pred             HHHHHHHHhCCCCCCCcC---CCCCCCHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence            9999999974 5443321   1222233444556667788877777555443

>PHA02946 ankyin-like protein; Provisional

Probab=99.41  E-value=2.3e-12  Score=134.60  Aligned_cols=112  Identities=17%  Similarity=0.132  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCC--HHHHHHHHh
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKF--PEAALAMVT   79 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~--~evv~~Ll~   79 (420)
                      ++.++++.|++.++ ++|.+|.+|+||||+||+.|+.++|++|+++||++ .+|..|.||||+|+..++  .+++++|+.
T Consensus        50 ~~~~iv~~Ll~~Ga-dvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~  128 (446)
T PHA02946         50 LDERFVEELLHRGY-SPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ  128 (446)
T ss_pred             CCHHHHHHHHHCcC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence            46789999999876 79999999999999999999999999999999999 899999999999998764  789999999


Q ss_pred             CCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          80 HNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      ++.......   ...+.+|..+......++++.+++...
T Consensus       129 ~Gadin~~~---d~~g~tpL~aa~~~~~~vv~~Ll~~ga  164 (446)
T PHA02946        129 YGAKINNSV---DEEGCGPLLACTDPSERVFKKIMSIGF  164 (446)
T ss_pred             cCCCccccc---CCCCCcHHHHHHCCChHHHHHHHhccc
Confidence            886543211   111344555555566677777776443

>PHA02791 ankyrin-like protein; Provisional

Probab=99.40  E-value=2e-12  Score=127.39  Aligned_cols=111  Identities=14%  Similarity=0.114  Sum_probs=90.3

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.+++++|++.++   +.+|.+|+||||+|+..|+.++|++|+++|+++ ..  +|.||||+|+..|+.++++.|+.+
T Consensus         9 ~~~~~~~~~Lis~~a---~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791          9 WKSKQLKSFLSSKDA---FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             cCHHHHHHHHHhCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC--CCCCHHHHHHHCCCHHHHHHHHHC
Confidence            478899999999654   578999999999999999999999999999998 54  378999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK  120 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~  120 (420)
                      +...+..   +..+.+..+.+......++++.+++.....
T Consensus        84 Gadvn~~---d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi  120 (284)
T PHA02791         84 GMDDSQF---DDKGNTALYYAVDSGNMQTVKLFVKKNWRL  120 (284)
T ss_pred             CCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            7654432   222234456677778889999999876544

>KOG0512|consensus

Probab=99.39  E-value=7e-13  Score=119.21  Aligned_cols=86  Identities=16%  Similarity=0.105  Sum_probs=80.6

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      |....|+.||+..+..+|.+|++|.||||-||.+||.++|+.|+..||+. .+...|+||||-||.+++.+++-.|+.|+
T Consensus        74 nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhg  153 (228)
T KOG0512|consen   74 NRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHG  153 (228)
T ss_pred             ccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhcc
Confidence            56678999999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             CCccchh
Q psy8764          82 TRGTEIM   88 (420)
Q Consensus        82 ~~~~~~~   88 (420)
                      ++.++..
T Consensus       154 aDVnA~t  160 (228)
T KOG0512|consen  154 ADVNAQT  160 (228)
T ss_pred             Ccccccc
Confidence            8776653

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.38  E-value=4.2e-12  Score=130.40  Aligned_cols=113  Identities=19%  Similarity=0.154  Sum_probs=64.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++...+..+.+|+||||+|+..|+.++|++|+++||++ ..+..|.||||.|+..|+.++++.|+.+
T Consensus        78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         78 EGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            355566666665554333444556666666666666666666666666666 5666666666666666666666666666


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKS  117 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~c  117 (420)
                      +......   +..+.+..+.+.....+++++.+++..
T Consensus       158 g~~~~~~---d~~g~TpL~~A~~~g~~eiv~~Ll~~g  191 (413)
T PHA02875        158 KACLDIE---DCCGCTPLIIAMAKGDIAICKMLLDSG  191 (413)
T ss_pred             CCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            5432211   111122233445555566666666543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.38  E-value=3.8e-12  Score=126.14  Aligned_cols=84  Identities=10%  Similarity=0.079  Sum_probs=75.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCc----CCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cc-cCCCCcHHHHHHHcCCHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQV----DKDGNTALHLATMENKPKAICLLLSLNCKL-LY-NCMDLSAIDYAIYYKFPEAAL   75 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~----D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~-n~~g~TpLh~A~~~g~~evv~   75 (420)
                      .|+.++++.|+++|+ ++|.+    |++|.||||+||+.|+.+++++|+++||++ .. +..|.||||.|+.+|+.++++
T Consensus        43 ~~~~eivk~LL~~GA-diN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivk  121 (300)
T PHA02884         43 FHYTDIIDAILKLGA-DPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLE  121 (300)
T ss_pred             cCCHHHHHHHHHCCC-CccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            589999999999886 78876    468999999999999999999999999999 64 567999999999999999999


Q ss_pred             HHHhCCCCccc
Q psy8764          76 AMVTHNTRGTE   86 (420)
Q Consensus        76 ~Ll~~~~~~~~   86 (420)
                      +|+.++.....
T Consensus       122 lLL~~GAdin~  132 (300)
T PHA02884        122 ILLSYGADINI  132 (300)
T ss_pred             HHHHCCCCCCC
Confidence            99999876554

>PHA02795 ankyrin-like protein; Provisional

Probab=99.38  E-value=1.4e-12  Score=134.55  Aligned_cols=81  Identities=12%  Similarity=0.020  Sum_probs=55.9

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcC--------CHHH
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYK--------FPEA   73 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g--------~~ev   73 (420)
                      |+.++++.|+++++ ++|.+|.+|.||||+|+..|+.++|++|+++||++ ..|..|.||||.|+.+|        +.++
T Consensus       199 ~~~eIve~LIs~GA-DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eI  277 (437)
T PHA02795        199 TVLEIYKLCIPYIE-DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKI  277 (437)
T ss_pred             CHHHHHHHHHhCcC-CcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHH
Confidence            45677777777554 56777777777777777777777777777777777 66777777777777766        3567


Q ss_pred             HHHHHhCCCCc
Q psy8764          74 ALAMVTHNTRG   84 (420)
Q Consensus        74 v~~Ll~~~~~~   84 (420)
                      +++|+.++..-
T Consensus       278 velLL~~gadI  288 (437)
T PHA02795        278 LEILLREPLSI  288 (437)
T ss_pred             HHHHHhCCCCC
Confidence            77777665543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.36  E-value=1.5e-12  Score=96.18  Aligned_cols=53  Identities=19%  Similarity=0.204  Sum_probs=45.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHH
Q psy8764          26 GNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMV   78 (420)
Q Consensus        26 G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll   78 (420)
                      |+||||.||+.|+.+++++|+++|+++ ..|.+|.||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            799999999999999999999999999 88999999999999999999999985

...

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.35  E-value=8.4e-12  Score=131.00  Aligned_cols=125  Identities=14%  Similarity=0.061  Sum_probs=94.5

Q ss_pred             CHHHHHHHHhcCCCCCCCcCCC-CChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           4 YTNTMVHLNSVHSHLLDQVDKD-GNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         4 ~~e~ve~LL~~~~~~in~~D~~-G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      +.++++.|++.++ ++|..|.+ |+||||+||.+|+.++|++|+++|+++ ..|..|.||||.|+..|+.++++.|+.++
T Consensus       146 ~~~iv~~Ll~~ga-din~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g  224 (477)
T PHA02878        146 EAEITKLLLSYGA-DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG  224 (477)
T ss_pred             HHHHHHHHHHcCC-CCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            3569999999776 78888888 999999999999999999999999999 88999999999999999999999999888


Q ss_pred             CCccchhcccCCCCcchHH-HHHh-hCHHHHHHHhhccccccccC--CCCcceeee
Q psy8764          82 TRGTEIMSLRSDKHPCVTL-ALVA-SMPRVFESVQDKSITKANCK--KDSKSFYIK  133 (420)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~-~li~-~~p~~~~~lLD~ci~~~~~~--~~~~~~~i~  133 (420)
                      ...+..+   .. +.+|.. +... ...++++.++++.......+  .+.+..|..
T Consensus       225 a~in~~d---~~-g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        225 ASTDARD---KC-GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             CCCCCCC---CC-CCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence            6544322   11 334443 3333 35788888998776554332  234444444

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.33  E-value=9.6e-12  Score=112.89  Aligned_cols=109  Identities=16%  Similarity=0.158  Sum_probs=83.8

Q ss_pred             HHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHH---HHHHHHCCCcc-ccc-CCCCcHHHHHHHcCCHHHHHHHHh-
Q psy8764           6 NTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKA---ICLLLSLNCKL-LYN-CMDLSAIDYAIYYKFPEAALAMVT-   79 (420)
Q Consensus         6 e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~v---V~lLL~~Ga~i-~~n-~~g~TpLh~A~~~g~~evv~~Ll~-   79 (420)
                      ++++.|.+.++ .++..|.+|+||||+||..|+.+.   +++|+++|+++ .++ ..|.||||+|+.+|+.+++++|+. 
T Consensus        38 ~~~~~l~~~g~-~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~  116 (166)
T PHA02743         38 EVAPFISGDGH-LLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQ  116 (166)
T ss_pred             HHHHHHhhcch-hhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhc
Confidence            55666777554 688999999999999999998765   89999999999 777 589999999999999999999995 


Q ss_pred             CCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          80 HNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      .+......   ...+.+..+.+.....+++++.+++...
T Consensus       117 ~gad~~~~---d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  152 (166)
T PHA02743        117 LGVNLGAI---NYQHETAYHIAYKMRDRRMMEILRANGA  152 (166)
T ss_pred             cCCCccCc---CCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            55443322   1222333455666667788888887654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.33  E-value=1.1e-11  Score=138.63  Aligned_cols=113  Identities=15%  Similarity=0.143  Sum_probs=92.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.+. ++|..|.+|+||||+||.+|+.++|++|+++|+++ ..|.+|.||||.|+..|+.++++.|+..
T Consensus       535 ~g~~~~l~~Ll~~G~-d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~  613 (823)
T PLN03192        535 TGNAALLEELLKAKL-DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHF  613 (823)
T ss_pred             cCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhc
Confidence            589999999999776 79999999999999999999999999999999999 8999999999999999999999999876


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK  120 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~  120 (420)
                      +.....     .......+.+...+..++++.++++....
T Consensus       614 ~~~~~~-----~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi  648 (823)
T PLN03192        614 ASISDP-----HAAGDLLCTAAKRNDLTAMKELLKQGLNV  648 (823)
T ss_pred             CcccCc-----ccCchHHHHHHHhCCHHHHHHHHHCCCCC
Confidence            542211     11122344555666677777777766544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.32  E-value=8.1e-12  Score=111.29  Aligned_cols=76  Identities=13%  Similarity=0.055  Sum_probs=57.3

Q ss_pred             HHHHHHHhcCCCCCCCcC-CCCChHHHHHHHcCCHHHHHHHHH-CCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy8764           6 NTMVHLNSVHSHLLDQVD-KDGNTALHLATMENKPKAICLLLS-LNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNT   82 (420)
Q Consensus         6 e~ve~LL~~~~~~in~~D-~~G~TpLHlAa~~g~~~vV~lLL~-~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~   82 (420)
                      ++++.|++.++ ++|.+| .+|+||||+|++.|+.+++++|++ .|+++ ..|..|.||||+|+..|+.+++++|+.++.
T Consensus        72 e~v~~Ll~~ga-din~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         72 EKLKLLMEWGA-DINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             HHHHHHHHcCC-CccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            45677777665 677776 478888888888888888888876 47777 777778888888888888888887777664

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.31  E-value=3.1e-11  Score=113.66  Aligned_cols=77  Identities=9%  Similarity=0.113  Sum_probs=37.1

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcC--CHHHHHHHHHCCCcc-ccc-CCCCcHHHHHHHc---CCHHHHH
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMEN--KPKAICLLLSLNCKL-LYN-CMDLSAIDYAIYY---KFPEAAL   75 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g--~~~vV~lLL~~Ga~i-~~n-~~g~TpLh~A~~~---g~~evv~   75 (420)
                      |+.++++.|++.    +|..|..|.||||+|+.+|  +.+++++|+++|+++ ..+ ..|.||||.|+..   ++.++++
T Consensus        32 ~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~  107 (209)
T PHA02859         32 DDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILK  107 (209)
T ss_pred             CcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHH
Confidence            455555555532    2344455555555555432  455555555555555 333 3455555554432   2455555


Q ss_pred             HHHhCCCC
Q psy8764          76 AMVTHNTR   83 (420)
Q Consensus        76 ~Ll~~~~~   83 (420)
                      +|+.++..
T Consensus       108 ~Ll~~gad  115 (209)
T PHA02859        108 ILIDSGSS  115 (209)
T ss_pred             HHHHCCCC
Confidence            55554443

>KOG0509|consensus

Probab=99.31  E-value=9.3e-12  Score=130.38  Aligned_cols=82  Identities=16%  Similarity=0.174  Sum_probs=63.0

Q ss_pred             CCCCHHHHHHHHhcCCCCCCCcC-CCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHH
Q psy8764           1 MSGYTNTMVHLNSVHSHLLDQVD-KDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMV   78 (420)
Q Consensus         1 m~G~~e~ve~LL~~~~~~in~~D-~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll   78 (420)
                      +|++.+++++|+++++ ++|..+ .-|.||||+||++||..+|.+|+++|||+ ++|.+|.||+|+|+..|+.-.+.+++
T Consensus        87 iNNrl~v~r~li~~ga-dvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll  165 (600)
T KOG0509|consen   87 INNRLDVARYLISHGA-DVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLL  165 (600)
T ss_pred             HcCcHHHHHHHHHcCC-CccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHH
Confidence            4667778888887765 677776 66778888888888888888888888888 77888888888888888888887777


Q ss_pred             hCCCC
Q psy8764          79 THNTR   83 (420)
Q Consensus        79 ~~~~~   83 (420)
                      .++..
T Consensus       166 ~~~~d  170 (600)
T KOG0509|consen  166 SKGAD  170 (600)
T ss_pred             Hhccc
Confidence            77643

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.31  E-value=1.8e-11  Score=126.97  Aligned_cols=113  Identities=12%  Similarity=0.038  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      +..++++.|++.+. +++..|..|.||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+.+|+.+++++|+.++
T Consensus       102 ~~~~~i~~ll~~g~-d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g  180 (434)
T PHA02874        102 IEKDMIKTILDCGI-DVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG  180 (434)
T ss_pred             CCHHHHHHHHHCcC-CCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC
Confidence            45688888998765 68888999999999999999999999999999999 88888999999999999999999999887


Q ss_pred             CCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          82 TRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      ......   +..+.+..+.+......++++.+++....
T Consensus       181 ~~~n~~---~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~  215 (434)
T PHA02874        181 AYANVK---DNNGESPLHNAAEYGDYACIKLLIDHGNH  215 (434)
T ss_pred             CCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            654322   11223334456666778888888887654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.31  E-value=1.5e-11  Score=129.07  Aligned_cols=113  Identities=12%  Similarity=0.029  Sum_probs=94.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHc-CCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYY-KFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~-g~~evv~~Ll~   79 (420)
                      +|+.++++.|++.++ ++|..|..|+||||+|++.|+.+++++|+++|+++ ..|..|.||||+|+.. ++.+++++|+.
T Consensus       178 ~~~~~iv~~Ll~~ga-d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~  256 (477)
T PHA02878        178 NKDQRLTELLLSYGA-NVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLE  256 (477)
T ss_pred             CCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHH
Confidence            689999999999876 79999999999999999999999999999999999 9999999999999975 78999999999


Q ss_pred             CCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          80 HNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      ++...+...   ...+.+|..-. ...+++++.+++....
T Consensus       257 ~gadvn~~~---~~~g~TpLh~A-~~~~~~v~~Ll~~gad  292 (477)
T PHA02878        257 HGVDVNAKS---YILGLTALHSS-IKSERKLKLLLEYGAD  292 (477)
T ss_pred             cCCCCCccC---CCCCCCHHHHH-ccCHHHHHHHHHCCCC
Confidence            987655432   11134444433 5678899999986653

>KOG0508|consensus

Probab=99.28  E-value=6.1e-12  Score=127.56  Aligned_cols=109  Identities=13%  Similarity=0.092  Sum_probs=86.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      -||.+++++|+++++ +++..|..|+|.||+||..||.+++++|++.|||+ .++.+|.||||.|++.|+.|++++|+.+
T Consensus       127 DG~leivKyLvE~ga-d~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~  205 (615)
T KOG0508|consen  127 DGHLEIVKYLVEHGA-DPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKH  205 (615)
T ss_pred             cchhHHHHHHHHcCC-CCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhC
Confidence            589999999998665 78889999999999999999999999999999999 8889999999999999999999999988


Q ss_pred             CCCccchhcccCCCCcchH-HHHHhhCHHHHHHHhhc
Q psy8764          81 NTRGTEIMSLRSDKHPCVT-LALVASMPRVFESVQDK  116 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~li~~~p~~~~~lLD~  116 (420)
                      +....    .+.. +.+|. .+-+...-++++.+++.
T Consensus       206 ga~i~----~d~~-GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  206 GAKID----VDGH-GMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             Cceee----ecCC-CCchHHHHhhhcchHHHHHHhcC
Confidence            75321    1111 23333 34556666777777763

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.27  E-value=1.8e-11  Score=111.08  Aligned_cols=79  Identities=16%  Similarity=0.108  Sum_probs=71.5

Q ss_pred             HHHHHHHhcCCCCCCCcC-CCCChHHHHHHHcCCHHHHHHHHH-CCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy8764           6 NTMVHLNSVHSHLLDQVD-KDGNTALHLATMENKPKAICLLLS-LNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNT   82 (420)
Q Consensus         6 e~ve~LL~~~~~~in~~D-~~G~TpLHlAa~~g~~~vV~lLL~-~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~   82 (420)
                      +++++|++.++ ++|.+| ..|+||||+|+..|+.+++++|++ .|+++ ..|..|.||||+|+..|+.+++++|+.++.
T Consensus        74 ~~i~~Ll~~Ga-din~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  152 (166)
T PHA02743         74 MKIELLVNMGA-DINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGA  152 (166)
T ss_pred             HHHHHHHHcCC-CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            34789999776 789988 589999999999999999999995 79999 899999999999999999999999999876


Q ss_pred             Ccc
Q psy8764          83 RGT   85 (420)
Q Consensus        83 ~~~   85 (420)
                      ...
T Consensus       153 ~~~  155 (166)
T PHA02743        153 VCD  155 (166)
T ss_pred             CCC
Confidence            544

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.27  E-value=5e-11  Score=123.62  Aligned_cols=108  Identities=15%  Similarity=0.058  Sum_probs=87.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ ++|..|.+|.||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus       134 ~~~~~~v~~Ll~~ga-d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  212 (434)
T PHA02874        134 KGDLESIKMLFEYGA-DVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDH  212 (434)
T ss_pred             CCCHHHHHHHHhCCC-CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            589999999999776 78999999999999999999999999999999999 8899999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHh
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQ  114 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lL  114 (420)
                      +......   . ..+.+|....+..-.+..+.++
T Consensus       213 g~~i~~~---~-~~g~TpL~~A~~~~~~~i~~Ll  242 (434)
T PHA02874        213 GNHIMNK---C-KNGFTPLHNAIIHNRSAIELLI  242 (434)
T ss_pred             CCCCcCC---C-CCCCCHHHHHHHCChHHHHHHH
Confidence            8653321   1 1234455444444444555554

>KOG0514|consensus

Probab=99.26  E-value=2.4e-11  Score=120.01  Aligned_cols=106  Identities=15%  Similarity=0.136  Sum_probs=81.6

Q ss_pred             CHHHHHHHHhcCCCCCCC-cCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           4 YTNTMVHLNSVHSHLLDQ-VDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         4 ~~e~ve~LL~~~~~~in~-~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      +.++|+.|...+  ++|. ....|.||||+|+.+|..++|+.||.-|||+ +.|.+|.|+|+.|+++||+|++++|+.+.
T Consensus       319 d~~vV~~LF~mg--nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p  396 (452)
T KOG0514|consen  319 DRTVVERLFKMG--DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVP  396 (452)
T ss_pred             hHHHHHHHHhcc--CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccC
Confidence            345666666654  2443 3456999999999999999999999999999 99999999999999999999999999988


Q ss_pred             CCccchhcccCCCCcchHHHHHhhCHHHHHHH
Q psy8764          82 TRGTEIMSLRSDKHPCVTLALVASMPRVFESV  113 (420)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~l  113 (420)
                      .+...+.  +.++.+....++.....+++..+
T Consensus       397 ~cd~sLt--D~DgSTAl~IAleagh~eIa~ml  426 (452)
T KOG0514|consen  397 SCDISLT--DVDGSTALSIALEAGHREIAVML  426 (452)
T ss_pred             cccceee--cCCCchhhhhHHhcCchHHHHHH
Confidence            7765543  33334445566666666665443

>PHA03095 ankyrin-like protein; Provisional

Probab=99.25  E-value=4.8e-11  Score=124.24  Aligned_cols=113  Identities=17%  Similarity=0.148  Sum_probs=89.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCH--HHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKP--KAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMV   78 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~--~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll   78 (420)
                      .++.++++.|++.+. +++.+|..|+||||+||..|+.  .+++.|+++|+++ ..|..|.||||+|+..|+.++++.|+
T Consensus       199 ~~~~~i~~~Ll~~g~-~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL  277 (471)
T PHA03095        199 KPRARIVRELIRAGC-DPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLI  277 (471)
T ss_pred             CCcHHHHHHHHHcCC-CCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            366788888888765 6888899999999999998875  5788889999999 88899999999999999999999999


Q ss_pred             hCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          79 THNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      .+++......   .++.++...+.....++.++.+++++.
T Consensus       278 ~~gad~n~~~---~~g~tpl~~A~~~~~~~~v~~LL~~~~  314 (471)
T PHA03095        278 ALGADINAVS---SDGNTPLSLMVRNNNGRAVRAALAKNP  314 (471)
T ss_pred             HcCCCCcccC---CCCCCHHHHHHHhCCHHHHHHHHHhCC
Confidence            8887554332   222344556677778888888887553

>PHA03095 ankyrin-like protein; Provisional

Probab=99.25  E-value=5.9e-11  Score=123.57  Aligned_cols=114  Identities=11%  Similarity=0.074  Sum_probs=84.3

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcC---CHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcC-CHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMEN---KPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYK-FPEAALA   76 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g---~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g-~~evv~~   76 (420)
                      .++.++++.|++.++ ++|..|..|.||||+|+..|   +.+++++|+++|+++ ..+..|.||||+|+.+| +.+++++
T Consensus        24 ~~~~~~v~~Ll~~ga-~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~l  102 (471)
T PHA03095         24 NVTVEEVRRLLAAGA-DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKL  102 (471)
T ss_pred             CCCHHHHHHHHHcCC-CcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHH
Confidence            467888888888765 68888888899999988888   888899999999888 78888899999999888 5888888


Q ss_pred             HHhCCCCccchhcccCCCCcchHHHHH---hhCHHHHHHHhhccccc
Q psy8764          77 MVTHNTRGTEIMSLRSDKHPCVTLALV---ASMPRVFESVQDKSITK  120 (420)
Q Consensus        77 Ll~~~~~~~~~~~~~~~~~~~~~~~li---~~~p~~~~~lLD~ci~~  120 (420)
                      |+.++.......    ..+.+|....+   ...+++++.++++....
T Consensus       103 Ll~~ga~in~~~----~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~  145 (471)
T PHA03095        103 LIKAGADVNAKD----KVGRTPLHVYLSGFNINPKVIRLLLRKGADV  145 (471)
T ss_pred             HHHcCCCCCCCC----CCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC
Confidence            888876543322    11333443333   22467777888766543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.24  E-value=5.3e-11  Score=125.49  Aligned_cols=76  Identities=9%  Similarity=0.103  Sum_probs=39.7

Q ss_pred             HHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcC---CHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCC---HHHHHHH
Q psy8764           5 TNTMVHLNSVHSHLLDQVDKDGNTALHLATMEN---KPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKF---PEAALAM   77 (420)
Q Consensus         5 ~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g---~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~---~evv~~L   77 (420)
                      .++++.|++.|+ ++|.+|.+|+||||+|+.+|   +.+++++|+++||++ ..|..|.||||+|+..|+   .+++++|
T Consensus        89 ~~iv~~Ll~~Ga-diN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~L  167 (489)
T PHA02798         89 LDIVKILIENGA-DINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLL  167 (489)
T ss_pred             HHHHHHHHHCCC-CCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHH
Confidence            455555555443 45555555555555555543   445555555555555 555555555555555554   5555555


Q ss_pred             HhCC
Q psy8764          78 VTHN   81 (420)
Q Consensus        78 l~~~   81 (420)
                      +.++
T Consensus       168 l~~g  171 (489)
T PHA02798        168 LEKG  171 (489)
T ss_pred             HHhC
Confidence            5544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.24  E-value=5.4e-11  Score=124.25  Aligned_cols=114  Identities=11%  Similarity=0.032  Sum_probs=74.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHH--HcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcC--CHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLAT--MENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYK--FPEAALA   76 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa--~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g--~~evv~~   76 (420)
                      +|+.++++.|++.++ +++..|..|.||||+|+  ..|+.++|++|+++|+++ ..+..|.||||.|+..|  +.++++.
T Consensus        83 ~~~~~iv~~Ll~~ga-~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~  161 (480)
T PHA03100         83 TDVKEIVKLLLEYGA-NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKL  161 (480)
T ss_pred             hchHHHHHHHHHCCC-CCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHH
Confidence            466777777777665 45777777777777777  777777777777777777 66777777777777777  7777777


Q ss_pred             HHhCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          77 MVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        77 Ll~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      |+.++.......   ..+.+..+.++.....++++.++++...
T Consensus       162 Ll~~g~din~~d---~~g~tpL~~A~~~~~~~iv~~Ll~~ga~  201 (480)
T PHA03100        162 LIDKGVDINAKN---RYGYTPLHIAVEKGNIDVIKFLLDNGAD  201 (480)
T ss_pred             HHHCCCCccccc---CCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            777765433221   1112223345555567777777765543

>PHA02741 hypothetical protein; Provisional

Probab=99.24  E-value=3.4e-11  Score=109.38  Aligned_cols=77  Identities=19%  Similarity=0.177  Sum_probs=70.2

Q ss_pred             HHHHHHHHhcCCCCCCCcCC-CCChHHHHHHHcCCHHHHHHHHH-CCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           5 TNTMVHLNSVHSHLLDQVDK-DGNTALHLATMENKPKAICLLLS-LNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         5 ~e~ve~LL~~~~~~in~~D~-~G~TpLHlAa~~g~~~vV~lLL~-~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      .+++++|++.++ ++|..|. +|+||||+|++.|+.+++++|++ .|+++ ..|..|.||||+|+..|+.++++.|+...
T Consensus        77 ~~ii~~Ll~~ga-din~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         77 AEIIDHLIELGA-DINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             HHHHHHHHHcCC-CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            588999999776 6888885 99999999999999999999997 59999 89999999999999999999999998764


Q ss_pred             C
Q psy8764          82 T   82 (420)
Q Consensus        82 ~   82 (420)
                      +
T Consensus       156 ~  156 (169)
T PHA02741        156 A  156 (169)
T ss_pred             H
Confidence            3

>PHA02798 ankyrin-like protein; Provisional

Probab=99.24  E-value=5.8e-11  Score=125.18  Aligned_cols=114  Identities=11%  Similarity=0.062  Sum_probs=92.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHc-----CCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcC---CHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATME-----NKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYK---FPE   72 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~-----g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g---~~e   72 (420)
                      .++.++++.|+++|+ ++|..|..|.||||.|+.+     |+.+++++|+++||++ ..|..|.||||.|+.+|   +.+
T Consensus        48 ~~~~~iv~~Ll~~Ga-dvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~  126 (489)
T PHA02798         48 SPSTDIVKLFINLGA-NVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLE  126 (489)
T ss_pred             CCCHHHHHHHHHCCC-CCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHH
Confidence            367899999999876 8999999999999999875     7799999999999999 99999999999999986   789


Q ss_pred             HHHHHHhCCCCccchhcccCCCCcchHH-HHHhhC---HHHHHHHhhccccc
Q psy8764          73 AALAMVTHNTRGTEIMSLRSDKHPCVTL-ALVASM---PRVFESVQDKSITK  120 (420)
Q Consensus        73 vv~~Ll~~~~~~~~~~~~~~~~~~~~~~-~li~~~---p~~~~~lLD~ci~~  120 (420)
                      ++++|+++|+.....+   . .+.+|.. ++....   +++++.++++.+..
T Consensus       127 iv~~Ll~~Gadvn~~d---~-~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi  174 (489)
T PHA02798        127 ILLFMIENGADTTLLD---K-DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI  174 (489)
T ss_pred             HHHHHHHcCCCccccC---C-CCCcHHHHHHHcCCcchHHHHHHHHHhCCCc
Confidence            9999999987654432   1 1334443 344444   78889999877644

>KOG0509|consensus

Probab=99.22  E-value=5.3e-11  Score=124.75  Aligned_cols=87  Identities=17%  Similarity=0.207  Sum_probs=79.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-ccc-CCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYN-CMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n-~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|..+.|+.|++.....+++.|++|-|+||.||.||..+++++|+++||++ ... .-|.||||.|+++|+..+|.+|++
T Consensus        54 ~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlq  133 (600)
T KOG0509|consen   54 YGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQ  133 (600)
T ss_pred             cchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHH
Confidence            589999999999845589999999999999999999999999999999999 544 789999999999999999999999


Q ss_pred             CCCCccchh
Q psy8764          80 HNTRGTEIM   88 (420)
Q Consensus        80 ~~~~~~~~~   88 (420)
                      ||++.+..+
T Consensus       134 hGAdpt~~D  142 (600)
T KOG0509|consen  134 HGADPTLKD  142 (600)
T ss_pred             cCCCCceec
Confidence            999877654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.22  E-value=6.2e-11  Score=111.57  Aligned_cols=114  Identities=10%  Similarity=0.014  Sum_probs=90.6

Q ss_pred             CCHHHHHHHHhcCCCCCCCcC-CCCChHHHHHHHc---CCHHHHHHHHHCCCcc-cccCCCCcHHHHHHH--cCCHHHHH
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVD-KDGNTALHLATME---NKPKAICLLLSLNCKL-LYNCMDLSAIDYAIY--YKFPEAAL   75 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D-~~G~TpLHlAa~~---g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~--~g~~evv~   75 (420)
                      |+.+++++|++.++ ++|..| .+|.||||+|+..   |+.+++++|+++|+++ ..|..|.||||.|+.  +++.++++
T Consensus        64 ~~~eiv~~Ll~~ga-dvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~  142 (209)
T PHA02859         64 VNVEILKFLIENGA-DVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIK  142 (209)
T ss_pred             CCHHHHHHHHHCCC-CCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHH
Confidence            68999999999876 788886 5899999998864   5899999999999999 999999999999986  47899999


Q ss_pred             HHHhCCCCccchhcccCCCCcchHH-H-HHhhCHHHHHHHhhcccccc
Q psy8764          76 AMVTHNTRGTEIMSLRSDKHPCVTL-A-LVASMPRVFESVQDKSITKA  121 (420)
Q Consensus        76 ~Ll~~~~~~~~~~~~~~~~~~~~~~-~-li~~~p~~~~~lLD~ci~~~  121 (420)
                      +|+.++......+   .. +.+|+. . .....+++++.+++......
T Consensus       143 ~Li~~gadin~~d---~~-g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~  186 (209)
T PHA02859        143 LLIDSGVSFLNKD---FD-NNNILYSYILFHSDKKIFDFLTSLGIDIN  186 (209)
T ss_pred             HHHHcCCCccccc---CC-CCcHHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence            9999987654432   22 334443 2 33457888899998765443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.22  E-value=7.7e-11  Score=123.10  Aligned_cols=113  Identities=13%  Similarity=0.069  Sum_probs=81.6

Q ss_pred             CHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCC------CcHHHHHHHcCC--HHHH
Q psy8764           4 YTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMD------LSAIDYAIYYKF--PEAA   74 (420)
Q Consensus         4 ~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g------~TpLh~A~~~g~--~evv   74 (420)
                      +.++++.|++.++ ++|..|..|.||||+|+..|+.+++++|+++|+++ ..+..|      .||||.|+..|+  .+++
T Consensus       155 ~~~iv~~Ll~~g~-din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv  233 (480)
T PHA03100        155 DLKILKLLIDKGV-DINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVV  233 (480)
T ss_pred             hHHHHHHHHHCCC-CcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHH
Confidence            7888888888765 67888888888888888888888888888888888 667777      788888888888  8888


Q ss_pred             HHHHhCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccccc
Q psy8764          75 LAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK  120 (420)
Q Consensus        75 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~  120 (420)
                      +.|+.++......+   ..+.+..+.+.....+++++.+++.....
T Consensus       234 ~~Ll~~g~din~~d---~~g~TpL~~A~~~~~~~iv~~Ll~~gad~  276 (480)
T PHA03100        234 NYLLSYGVPINIKD---VYGFTPLHYAVYNNNPEFVKYLLDLGANP  276 (480)
T ss_pred             HHHHHcCCCCCCCC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            88887765433221   11122234455556677777777776633

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.20  E-value=1.2e-10  Score=127.76  Aligned_cols=62  Identities=13%  Similarity=0.052  Sum_probs=44.6

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCC--HHHHHHHHHCCCcc-cccCCCCcHHHHH
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENK--PKAICLLLSLNCKL-LYNCMDLSAIDYA   65 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~--~~vV~lLL~~Ga~i-~~n~~g~TpLh~A   65 (420)
                      |+.+++++|++.|+ ++|.+|.+|+||||+|++.|+  .++|++|+++||++ .+|..|+||||.|
T Consensus       190 ~~~eIVklLLe~GA-DVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~A  254 (764)
T PHA02716        190 VDIDILEWLCNNGV-NVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTY  254 (764)
T ss_pred             CCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            55677777777654 677777777777777777774  47777777777777 6777777777765

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.20  E-value=5.7e-11  Score=129.91  Aligned_cols=78  Identities=22%  Similarity=0.209  Sum_probs=75.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++ ++|..|.+|+||||+||.+|+.++|++|+++|+++ ..|..|.||||+|+.+|+.+++++|+.+
T Consensus        92 ~G~~~~vk~LL~~Ga-din~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322         92 SGDAVGARILLTGGA-DPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRH  170 (664)
T ss_pred             cCCHHHHHHHHHCCC-CCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence            689999999999776 79999999999999999999999999999999999 9999999999999999999999999988

>KOG0195|consensus

Probab=99.20  E-value=2.4e-11  Score=116.81  Aligned_cols=80  Identities=19%  Similarity=0.276  Sum_probs=75.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +||..++|.||+.++ -+|.++....||||+||.+||.++|+-||+..+|+ ..|..|.||||+||.+|...+++-|+..
T Consensus        44 egh~aivemll~rga-rvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~  122 (448)
T KOG0195|consen   44 EGHVAIVEMLLSRGA-RVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISC  122 (448)
T ss_pred             cccHHHHHHHHhccc-ccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhc
Confidence            699999999999887 69999999999999999999999999999999999 9999999999999999999999999987


Q ss_pred             CC
Q psy8764          81 NT   82 (420)
Q Consensus        81 ~~   82 (420)
                      ++
T Consensus       123 ga  124 (448)
T KOG0195|consen  123 GA  124 (448)
T ss_pred             cc
Confidence            75

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.19  E-value=1.7e-10  Score=126.46  Aligned_cols=80  Identities=20%  Similarity=0.161  Sum_probs=75.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.+++++|++.++ ++|..|..|+||||+||+.|+.++|++|+++||++ ..+..|.||||.|+..|+.++++.|+.+
T Consensus       155 ~~~~~i~k~Ll~~Ga-dvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~  233 (682)
T PHA02876        155 QDELLIAEMLLEGGA-DVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDN  233 (682)
T ss_pred             CCcHHHHHHHHhCCC-CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            588999999999876 79999999999999999999999999999999999 8899999999999999999999999876


Q ss_pred             CC
Q psy8764          81 NT   82 (420)
Q Consensus        81 ~~   82 (420)
                      +.
T Consensus       234 ~~  235 (682)
T PHA02876        234 RS  235 (682)
T ss_pred             CC
Confidence            54

>KOG0508|consensus

Probab=99.18  E-value=4.1e-11  Score=121.64  Aligned_cols=78  Identities=17%  Similarity=0.137  Sum_probs=74.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .||++++++|++.++ ++|.++..|+||||.||..||.+++++|+++|+.+..|..|.|||..|+..|+.++|+.|+..
T Consensus       160 kGh~~I~qyLle~gA-Dvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  160 KGHVDIAQYLLEQGA-DVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             cCchHHHHHHHHhCC-CcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            699999999999887 899999999999999999999999999999999997788899999999999999999999953

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.17  E-value=2.1e-10  Score=121.09  Aligned_cols=114  Identities=10%  Similarity=0.001  Sum_probs=79.4

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHc---CCHHHHHHHHHCCCcc--cccCCCCcHHHHHHHc--CCHHHHH
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATME---NKPKAICLLLSLNCKL--LYNCMDLSAIDYAIYY--KFPEAAL   75 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~---g~~~vV~lLL~~Ga~i--~~n~~g~TpLh~A~~~--g~~evv~   75 (420)
                      |+.+++++|++.|+ ++|.+|.+|.||||.|+.+   |+.++|++|+++||++  ..|..|.||||+|+..  ++.++++
T Consensus        86 ~~~~iv~~Ll~~Ga-din~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~  164 (494)
T PHA02989         86 KIKKIVKLLLKFGA-DINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIK  164 (494)
T ss_pred             hHHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHH
Confidence            56788888888765 6888888888888877655   6788888888888888  5778888888888754  5788888


Q ss_pred             HHHhCCCCccchhcccCCCCcchHHHHHh-----hCHHHHHHHhhccccc
Q psy8764          76 AMVTHNTRGTEIMSLRSDKHPCVTLALVA-----SMPRVFESVQDKSITK  120 (420)
Q Consensus        76 ~Ll~~~~~~~~~~~~~~~~~~~~~~~li~-----~~p~~~~~lLD~ci~~  120 (420)
                      +|++++.......   ...+.+|......     ...++++.++++....
T Consensus       165 ~Ll~~Gadi~~~~---~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v  211 (494)
T PHA02989        165 ILLSFGVNLFEKT---SLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI  211 (494)
T ss_pred             HHHHcCCCccccc---cccCCChHHHHHhcccccccHHHHHHHHhCCCCc
Confidence            8888876543311   1112334322221     2467778888766543

>KOG0514|consensus

Probab=99.16  E-value=5.6e-11  Score=117.45  Aligned_cols=78  Identities=24%  Similarity=0.339  Sum_probs=72.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHC-CCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSL-NCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~-Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|.+++|+.||.+++ ++|.+|++|.||||.||.+||.|+|++||.. +||+ +.|.+|.|+|.+|-+.||.|++-+|-.
T Consensus       350 HGr~d~vk~LLacgA-dVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  350 HGRVDMVKALLACGA-DVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             cCcHHHHHHHHHccC-CCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHH
Confidence            589999999999987 8999999999999999999999999999965 8999 999999999999999999999888754


Q ss_pred             C
Q psy8764          80 H   80 (420)
Q Consensus        80 ~   80 (420)
                      |
T Consensus       429 ~  429 (452)
T KOG0514|consen  429 H  429 (452)
T ss_pred             H
Confidence            4

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.15  E-value=1e-10  Score=123.44  Aligned_cols=75  Identities=15%  Similarity=0.117  Sum_probs=59.1

Q ss_pred             HHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy8764           6 NTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNT   82 (420)
Q Consensus         6 e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~   82 (420)
                      +++++|++ + .++|.+|.+|+||||+||..|+.++|++|+++||++ ..|..|.||||+|+.+|+.++++.|+..+.
T Consensus       238 ~il~~l~~-~-advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        238 KVLNFILK-Y-IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             HHHHHHHh-C-CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            44444433 2 356777888888888888888888888888888888 888888888888888888888888887654

>KOG4214|consensus

Probab=99.14  E-value=9.3e-11  Score=95.57  Aligned_cols=82  Identities=12%  Similarity=0.178  Sum_probs=74.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      ||..+-|+.....+- ++|.+- .|+||||+||..|..++.++|+..||++ .+|+.|-|||--|+-.||.++|++|+..
T Consensus        12 NG~~DeVk~~v~~g~-nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~   89 (117)
T KOG4214|consen   12 NGEIDEVKQSVNEGL-NVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQN   89 (117)
T ss_pred             cCcHHHHHHHHHccc-cHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHc
Confidence            788888998887663 566554 8999999999999999999999999999 9999999999999999999999999999


Q ss_pred             CCCcc
Q psy8764          81 NTRGT   85 (420)
Q Consensus        81 ~~~~~   85 (420)
                      ++...
T Consensus        90 GAdrt   94 (117)
T KOG4214|consen   90 GADRT   94 (117)
T ss_pred             Ccccc
Confidence            87644

>KOG4177|consensus

Probab=99.14  E-value=1.2e-10  Score=130.71  Aligned_cols=85  Identities=14%  Similarity=0.109  Sum_probs=66.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|++.+++.+++++. .+|.++.+|.||||.||..|+.++|++||++||++ .+++.|+||||.|+..|+.+++++|+++
T Consensus       517 ~~~v~~~~~l~~~ga-~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~  595 (1143)
T KOG4177|consen  517 EDTVKVAKILLEHGA-NVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKH  595 (1143)
T ss_pred             hhhHHHHHHHhhcCC-ceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHc
Confidence            356677777777655 67788888888888888888888888888888888 7778888888888888888888888888


Q ss_pred             CCCccch
Q psy8764          81 NTRGTEI   87 (420)
Q Consensus        81 ~~~~~~~   87 (420)
                      ++..++.
T Consensus       596 GA~vna~  602 (1143)
T KOG4177|consen  596 GASVNAA  602 (1143)
T ss_pred             CCCCCcc
Confidence            7765544

>PHA02795 ankyrin-like protein; Provisional

Probab=99.14  E-value=2.4e-10  Score=118.13  Aligned_cols=112  Identities=11%  Similarity=0.066  Sum_probs=74.6

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcC-----CCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVD-----KDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAAL   75 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D-----~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~   75 (420)
                      +|+.+++++|+++|+...+..+     ..|.||+|.|+.+|+.++|++|+++||++ .+|..|.||||+|+.+|+.++++
T Consensus       159 ~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        159 KKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             cCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            4677777777776653322221     23667777888888888888888888888 77888888888888888888888


Q ss_pred             HHHhCCCCccchhcccCCCCcchHHHHHhhC--------HHHHHHHhhc
Q psy8764          76 AMVTHNTRGTEIMSLRSDKHPCVTLALVASM--------PRVFESVQDK  116 (420)
Q Consensus        76 ~Ll~~~~~~~~~~~~~~~~~~~~~~~li~~~--------p~~~~~lLD~  116 (420)
                      .|+.+|+.....+   ..+.++.+.+...+.        .++++.++++
T Consensus       239 lLL~~GAdIN~~d---~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~  284 (437)
T PHA02795        239 WLLENGANVNAVM---SNGYTCLDVAVDRGSVIARRETHLKILEILLRE  284 (437)
T ss_pred             HHHHCCCCCCCcC---CCCCCHHHHHHHcCCcccccccHHHHHHHHHhC
Confidence            8888876554332   222333334444331        3667777653

>PHA02946 ankyin-like protein; Provisional

Probab=99.12  E-value=5.7e-10  Score=116.72  Aligned_cols=126  Identities=10%  Similarity=0.003  Sum_probs=92.3

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCC--HHHHHHHHHCCCcc--cccCCCCcHHHHHHHcCCHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENK--PKAICLLLSLNCKL--LYNCMDLSAIDYAIYYKFPEAALAM   77 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~--~~vV~lLL~~Ga~i--~~n~~g~TpLh~A~~~g~~evv~~L   77 (420)
                      +|+.+++++|+++++ ++|.+|++|+||||+|+..++  .+++++|+++||++  ..|..|.|||| |+..|+.++++.|
T Consensus        82 ~g~~eiv~lLL~~GA-din~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~L  159 (446)
T PHA02946         82 INNNRIVAMLLTHGA-DPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKI  159 (446)
T ss_pred             cCCHHHHHHHHHCcC-CCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHH
Confidence            689999999999775 799999999999999998764  89999999999999  36899999998 7778999999999


Q ss_pred             HhCCCCccchhcccCCCCcchH-HHHHhhC--HHHHHHHhhccccccc-cCCCCcceeee
Q psy8764          78 VTHNTRGTEIMSLRSDKHPCVT-LALVASM--PRVFESVQDKSITKAN-CKKDSKSFYIK  133 (420)
Q Consensus        78 l~~~~~~~~~~~~~~~~~~~~~-~~li~~~--p~~~~~lLD~ci~~~~-~~~~~~~~~i~  133 (420)
                      +.++......+   .. +.+|. .++....  .++++.++++...... +..+.+..|+.
T Consensus       160 l~~gad~~~~d---~~-G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~A  215 (446)
T PHA02946        160 MSIGFEARIVD---KF-GKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIV  215 (446)
T ss_pred             HhccccccccC---CC-CCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            99876544322   11 22233 3333222  3667788877654433 22344555543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.11  E-value=3.6e-10  Score=124.06  Aligned_cols=85  Identities=12%  Similarity=-0.026  Sum_probs=75.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCc-CCCCChHHHHHHH--cCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCC--HHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQV-DKDGNTALHLATM--ENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKF--PEAAL   75 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~-D~~G~TpLHlAa~--~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~--~evv~   75 (420)
                      +|+.++++.|++.+..++|.. |..|+||||.|+.  .|+.++|++|+++|+++ ..|..|.||||+|+.+|+  .++++
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVk  231 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIK  231 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHH
Confidence            578899999999873478988 9999999999865  46899999999999999 999999999999999995  59999


Q ss_pred             HHHhCCCCccc
Q psy8764          76 AMVTHNTRGTE   86 (420)
Q Consensus        76 ~Ll~~~~~~~~   86 (420)
                      +|+++|+..+.
T Consensus       232 lLLe~GADVN~  242 (764)
T PHA02716        232 KIIELGGDMDM  242 (764)
T ss_pred             HHHHcCCCCCC
Confidence            99999876543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.10  E-value=2.4e-10  Score=127.94  Aligned_cols=115  Identities=13%  Similarity=0.048  Sum_probs=86.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      +|+.++++.|+++++ ++|..|.+|+||||+|+..||.+++++|++.|+... ...|.+|||.|+.+|+.++++.|++++
T Consensus       568 ~g~~~~v~~Ll~~ga-din~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~-~~~~~~~L~~Aa~~g~~~~v~~Ll~~G  645 (823)
T PLN03192        568 KGYEDCVLVLLKHAC-NVHIRDANGNTALWNAISAKHHKIFRILYHFASISD-PHAAGDLLCTAAKRNDLTAMKELLKQG  645 (823)
T ss_pred             cChHHHHHHHHhcCC-CCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC-cccCchHHHHHHHhCCHHHHHHHHHCC
Confidence            699999999999765 799999999999999999999999888887665542 234667888888888888888888877


Q ss_pred             CCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccccc
Q psy8764          82 TRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKA  121 (420)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~~  121 (420)
                      ...+..   +.++.+..+.+..+...++++.++++.....
T Consensus       646 adin~~---d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~  682 (823)
T PLN03192        646 LNVDSE---DHQGATALQVAMAEDHVDMVRLLIMNGADVD  682 (823)
T ss_pred             CCCCCC---CCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence            654432   2222344556666777888888887766443

>KOG0512|consensus

Probab=99.08  E-value=1.9e-10  Score=103.64  Aligned_cols=78  Identities=15%  Similarity=0.055  Sum_probs=68.2

Q ss_pred             CCCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCC-HHHHHHHH
Q psy8764           1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKF-PEAALAMV   78 (420)
Q Consensus         1 m~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~-~evv~~Ll   78 (420)
                      .+||.++++.|+..++ +.+.+.+.||||||-||.-++.+++.+||++|||+ +..+..+||||+|+...+ .+.+.+|+
T Consensus       106 Yn~h~div~~ll~~gA-n~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll  184 (228)
T KOG0512|consen  106 YNGHLDIVHELLLSGA-NKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLL  184 (228)
T ss_pred             hcCchHHHHHHHHccC-CcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHh
Confidence            3799999999998776 68889999999999999999999999999999999 888888999999997655 45555554


Q ss_pred             h
Q psy8764          79 T   79 (420)
Q Consensus        79 ~   79 (420)
                      .
T Consensus       185 ~  185 (228)
T KOG0512|consen  185 H  185 (228)
T ss_pred             h
Confidence            3

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.08  E-value=4e-10  Score=111.83  Aligned_cols=76  Identities=13%  Similarity=0.122  Sum_probs=68.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCc-CCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQV-DKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMV   78 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~-D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll   78 (420)
                      .|+.++++.|+++|+ ++|.. +..|.||||+|+..|+.+++++|+++||++ ..|..|.||||+|+..++.+++..+.
T Consensus        80 ~~~~eivklLL~~GA-DVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884         80 CDNDDAAKLLIRYGA-DVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             cCCHHHHHHHHHcCC-CcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence            588999999999876 78985 568999999999999999999999999999 89999999999999999998876554

>PHA02917 ankyrin-like protein; Provisional

Probab=99.07  E-value=9.1e-10  Score=120.28  Aligned_cols=110  Identities=13%  Similarity=0.114  Sum_probs=83.6

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHH--HHcCCHHHHHHHHHCCCcc-cccC---CC-----------CcHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLA--TMENKPKAICLLLSLNCKL-LYNC---MD-----------LSAIDY   64 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlA--a~~g~~~vV~lLL~~Ga~i-~~n~---~g-----------~TpLh~   64 (420)
                      +|+.+++++|++.|+ ++|..|.+|+||||.|  +.+|+.++|++|+++||++ ..|.   .|           .||||+
T Consensus       113 ~~~~e~vk~Ll~~Ga-din~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~  191 (661)
T PHA02917        113 NVDVDLIKVLVEHGF-DLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHL  191 (661)
T ss_pred             cCCHHHHHHHHHcCC-CCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHH
Confidence            689999999999776 8999999999999964  3579999999999999999 5543   23           599999


Q ss_pred             HHH-----------cCCHHHHHHHHhCCCCccchhcccCCCCcchH-HHHHhhCH--HHHHHHhhc
Q psy8764          65 AIY-----------YKFPEAALAMVTHNTRGTEIMSLRSDKHPCVT-LALVASMP--RVFESVQDK  116 (420)
Q Consensus        65 A~~-----------~g~~evv~~Ll~~~~~~~~~~~~~~~~~~~~~-~~li~~~p--~~~~~lLD~  116 (420)
                      |+.           +|+.+++++|+.++...+...   .+ +.+|. .++....+  ++++.+++.
T Consensus       192 a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d---~~-G~TpLh~A~~~g~~~~eivk~Li~g  253 (661)
T PHA02917        192 YIISHLYSESDTRAYVRPEVVKCLINHGIKPSSID---KN-YCTALQYYIKSSHIDIDIVKLLMKG  253 (661)
T ss_pred             HHhhcccccccccccCcHHHHHHHHHCCCCcccCC---CC-CCcHHHHHHHcCCCcHHHHHHHHhC
Confidence            986           568999999999987654322   22 33333 34444443  677777753

>KOG0502|consensus

Probab=99.06  E-value=3.3e-10  Score=105.54  Aligned_cols=103  Identities=14%  Similarity=0.080  Sum_probs=79.8

Q ss_pred             CCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccchhcccCCCCc
Q psy8764          18 LLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHP   96 (420)
Q Consensus        18 ~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~~~~~~~   96 (420)
                      .+|.+|+.|.|||.+||+.||.++|++||+.||++ +.-+...|+|.+|++.|..++|++|+..+-..+.-   +-.+.+
T Consensus       152 ~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvy---DwNGgT  228 (296)
T KOG0502|consen  152 KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVY---DWNGGT  228 (296)
T ss_pred             cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCccee---ccCCCc
Confidence            58999999999999999999999999999999999 88888999999999999999999999876543322   222112


Q ss_pred             chHHHHHhhCHHHHHHHhhcccccccc
Q psy8764          97 CVTLALVASMPRVFESVQDKSITKANC  123 (420)
Q Consensus        97 ~~~~~li~~~p~~~~~lLD~ci~~~~~  123 (420)
                      ....+.-.+.-++++.++.+......+
T Consensus       229 pLlyAvrgnhvkcve~Ll~sGAd~t~e  255 (296)
T KOG0502|consen  229 PLLYAVRGNHVKCVESLLNSGADVTQE  255 (296)
T ss_pred             eeeeeecCChHHHHHHHHhcCCCcccc
Confidence            122233345667888888866654443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.05  E-value=1.7e-09  Score=118.58  Aligned_cols=112  Identities=15%  Similarity=0.128  Sum_probs=78.4

Q ss_pred             CHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHc-CCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           4 YTNTMVHLNSVHSHLLDQVDKDGNTALHLATME-NKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         4 ~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~-g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      +.++++.|++.++ +++..|..|+||||+|+.. ++.+++++|+++|+++ ..|..|.||||+|+..|+.++++.|+.++
T Consensus       320 ~~~~v~~Ll~~ga-din~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~g  398 (682)
T PHA02876        320 DTENIRTLIMLGA-DVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYG  398 (682)
T ss_pred             CHHHHHHHHHcCC-CCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            4788888888765 6888888888888888874 5788888888888888 88888888888888888888888888887


Q ss_pred             CCccchhcccCCCCcchHHHHHhhC-HHHHHHHhhcccc
Q psy8764          82 TRGTEIMSLRSDKHPCVTLALVASM-PRVFESVQDKSIT  119 (420)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~li~~~-p~~~~~lLD~ci~  119 (420)
                      .......   ....+..+.+....- ..+++.++++...
T Consensus       399 ad~~~~~---~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad  434 (682)
T PHA02876        399 ADIEALS---QKIGTALHFALCGTNPYMSVKTLIDRGAN  434 (682)
T ss_pred             CCccccC---CCCCchHHHHHHcCCHHHHHHHHHhCCCC
Confidence            6654332   111222333332222 2345666665544

>PHA02792 ankyrin-like protein; Provisional

Probab=99.01  E-value=8.7e-10  Score=118.16  Aligned_cols=114  Identities=13%  Similarity=0.075  Sum_probs=87.6

Q ss_pred             CCCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHH-cCCHHHHHHHHHCCCcc-c-------------------------
Q psy8764           1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATM-ENKPKAICLLLSLNCKL-L-------------------------   53 (420)
Q Consensus         1 m~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~-~g~~~vV~lLL~~Ga~i-~-------------------------   53 (420)
                      .+|+.|++++|+++|+ ++|.+++.|+||+|+|+. +||.|+|++|+++||++ .                         
T Consensus        81 ~n~~lElvk~LI~~GA-dvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~  159 (631)
T PHA02792         81 DNIDIELLKLLISKGL-EINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDEL  159 (631)
T ss_pred             hcccHHHHHHHHHcCC-CcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhc
Confidence            3799999999999765 899999999999999966 79999999999999973 1                         


Q ss_pred             -----------ccCCCCcHHHHHHHcC-------CHHHHHHHHhCCCCccchhcccCCCCcchHHHHHhh--CHHHHHHH
Q psy8764          54 -----------YNCMDLSAIDYAIYYK-------FPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVAS--MPRVFESV  113 (420)
Q Consensus        54 -----------~n~~g~TpLh~A~~~g-------~~evv~~Ll~~~~~~~~~~~~~~~~~~~~~~~li~~--~p~~~~~l  113 (420)
                                 .++.|.||||+|+.++       ++|+++.|++|++.....+   .++++....++...  --+.++.+
T Consensus       160 ~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d---~~g~t~l~~~~~~~~i~~ei~~~L  236 (631)
T PHA02792        160 DDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYT---YREHTTLYYYVDKCDIKREIFDAL  236 (631)
T ss_pred             cccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccC---CCCChHHHHHHHcccchHHHHHHH
Confidence                       1345999999999999       8999999999987544322   22223233333333  35677888


Q ss_pred             hhccc
Q psy8764         114 QDKSI  118 (420)
Q Consensus       114 LD~ci  118 (420)
                      ++.|.
T Consensus       237 ~~~~~  241 (631)
T PHA02792        237 FDSNY  241 (631)
T ss_pred             Hhccc
Confidence            87544

>KOG0195|consensus

Probab=99.00  E-value=3e-10  Score=109.43  Aligned_cols=81  Identities=17%  Similarity=0.153  Sum_probs=71.7

Q ss_pred             HHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccc
Q psy8764           8 MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTE   86 (420)
Q Consensus         8 ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~   86 (420)
                      |++-|+...+++|.-|+.|.+|||+||++||..+|+.||++|+.+ ..|-...||||+|+.+||.++|+.|++.+++.++
T Consensus        16 vrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvna   95 (448)
T KOG0195|consen   16 VRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNA   95 (448)
T ss_pred             EEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccch
Confidence            344566666789999999999999999999999999999999999 8888899999999999999999999988776655


Q ss_pred             hh
Q psy8764          87 IM   88 (420)
Q Consensus        87 ~~   88 (420)
                      +.
T Consensus        96 vn   97 (448)
T KOG0195|consen   96 VN   97 (448)
T ss_pred             hh
Confidence            43

>PHA02730 ankyrin-like protein; Provisional

Probab=99.00  E-value=1.8e-09  Score=116.67  Aligned_cols=62  Identities=23%  Similarity=0.248  Sum_probs=38.2

Q ss_pred             CcCCCCChHHHHHHHcC---CHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcC--CHHHHHHHHhCCC
Q psy8764          21 QVDKDGNTALHLATMEN---KPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYK--FPEAALAMVTHNT   82 (420)
Q Consensus        21 ~~D~~G~TpLHlAa~~g---~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g--~~evv~~Ll~~~~   82 (420)
                      .+|.+|+||||+|+.+|   +.++|++||++||++ .+|..|.||||+|+..|  +.|+|++|++++.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~  103 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYS  103 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCC
Confidence            55666666666666665   366666666666666 66666666666666644  5666666666643

>KOG4177|consensus

Probab=98.99  E-value=6e-10  Score=125.13  Aligned_cols=82  Identities=16%  Similarity=0.147  Sum_probs=77.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+...|+.||++++ +++.+|+.|+||||.||..||.+++++|+++||++ ..+.+|.||||+|++.|+.++++.+...
T Consensus       550 ~g~v~~VkfLLe~gA-dv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~  628 (1143)
T KOG4177|consen  550 YGNVDLVKFLLEHGA-DVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVV  628 (1143)
T ss_pred             cCCchHHHHhhhCCc-cccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhc
Confidence            589999999999776 89999999999999999999999999999999999 9999999999999999999999999988


Q ss_pred             CCCc
Q psy8764          81 NTRG   84 (420)
Q Consensus        81 ~~~~   84 (420)
                      ++..
T Consensus       629 ~~~~  632 (1143)
T KOG4177|consen  629 TATP  632 (1143)
T ss_pred             cCcc
Confidence            7764

>KOG0502|consensus

Probab=98.99  E-value=9.2e-10  Score=102.59  Aligned_cols=83  Identities=19%  Similarity=0.191  Sum_probs=78.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .||.++|++||+.++ +.+...+...|||.+|++.|..++|++||.++.|+ ..|.+|-|||-+|++.||.++++.|+..
T Consensus       170 ~G~i~vV~fLL~~GA-dp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~s  248 (296)
T KOG0502|consen  170 KGHIPVVQFLLNSGA-DPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNS  248 (296)
T ss_pred             cCchHHHHHHHHcCC-ChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhc
Confidence            599999999999776 78999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             CCCcc
Q psy8764          81 NTRGT   85 (420)
Q Consensus        81 ~~~~~   85 (420)
                      ++..+
T Consensus       249 GAd~t  253 (296)
T KOG0502|consen  249 GADVT  253 (296)
T ss_pred             CCCcc
Confidence            87654

>PHA02736 Viral ankyrin protein; Provisional

Probab=98.98  E-value=7.3e-10  Score=98.68  Aligned_cols=96  Identities=11%  Similarity=0.151  Sum_probs=72.3

Q ss_pred             CCCcCCCCChHHHHHHHcCCHH---HHHHHHHCCCcc-ccc-CCCCcHHHHHHHcCCHHHHHHHHhC-CCCccchhcccC
Q psy8764          19 LDQVDKDGNTALHLATMENKPK---AICLLLSLNCKL-LYN-CMDLSAIDYAIYYKFPEAALAMVTH-NTRGTEIMSLRS   92 (420)
Q Consensus        19 in~~D~~G~TpLHlAa~~g~~~---vV~lLL~~Ga~i-~~n-~~g~TpLh~A~~~g~~evv~~Ll~~-~~~~~~~~~~~~   92 (420)
                      ++..|.+|.||||+||+.|+.+   ++++|+++|+++ ..+ ..|.||||+|+..|+.++++.|+.+ +...+...   .
T Consensus        48 ~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~---~  124 (154)
T PHA02736         48 VLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILN---Y  124 (154)
T ss_pred             HHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcccc---C
Confidence            3456899999999999999874   688999999999 777 5899999999999999999999974 44332221   1


Q ss_pred             CCCcchHHHHHhhCHHHHHHHhhcc
Q psy8764          93 DKHPCVTLALVASMPRVFESVQDKS  117 (420)
Q Consensus        93 ~~~~~~~~~li~~~p~~~~~lLD~c  117 (420)
                      .+.+..+.+......++++.+++..
T Consensus       125 ~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736        125 AFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            1122234455556778888887643

>PHA02917 ankyrin-like protein; Provisional

Probab=98.97  E-value=1.8e-09  Score=118.06  Aligned_cols=81  Identities=22%  Similarity=0.198  Sum_probs=74.5

Q ss_pred             CHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHH-cCCHHHHHHHHhCC
Q psy8764           4 YTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIY-YKFPEAALAMVTHN   81 (420)
Q Consensus         4 ~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~-~g~~evv~~Ll~~~   81 (420)
                      +.++++.|+++++ ++|.+|..|+||||+|+..|+.+++++|+++|+++ ..+..|.||||+|+. .++.+++++|+.++
T Consensus       431 ~~~~v~~Ll~~GA-dIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~g  509 (661)
T PHA02917        431 ILSTINICLPYLK-DINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHK  509 (661)
T ss_pred             hHHHHHHHHHCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence            4678899999876 79999999999999999999999999999999999 999999999999996 78999999999988


Q ss_pred             CCcc
Q psy8764          82 TRGT   85 (420)
Q Consensus        82 ~~~~   85 (420)
                      ...+
T Consensus       510 a~i~  513 (661)
T PHA02917        510 PTLD  513 (661)
T ss_pred             CChh
Confidence            6544

>PHA02730 ankyrin-like protein; Provisional

Probab=98.97  E-value=1.4e-09  Score=117.50  Aligned_cols=81  Identities=15%  Similarity=0.093  Sum_probs=72.9

Q ss_pred             HHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccC-CCCcHHHHHHH--cCCHHHHHHHHhCC
Q psy8764           6 NTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNC-MDLSAIDYAIY--YKFPEAALAMVTHN   81 (420)
Q Consensus         6 e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~-~g~TpLh~A~~--~g~~evv~~Ll~~~   81 (420)
                      +++++|+++++ ++|..|..|.||||+|+..|+.+++++|+++||++ ..+. .|.||||.|+.  +|+.++++.|++++
T Consensus       443 ~ivk~LIs~GA-DINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~g  521 (672)
T PHA02730        443 DVFDILSKYMD-DIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYH  521 (672)
T ss_pred             HHHHHHHhccc-chhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcC
Confidence            56899999776 79999999999999999999999999999999999 8886 59999999997  48999999999998


Q ss_pred             CCccch
Q psy8764          82 TRGTEI   87 (420)
Q Consensus        82 ~~~~~~   87 (420)
                      ...+.+
T Consensus       522 a~i~~I  527 (672)
T PHA02730        522 PTLETM  527 (672)
T ss_pred             CCHHHH
Confidence            765544

>KOG0515|consensus

Probab=98.96  E-value=2.3e-09  Score=110.10  Aligned_cols=81  Identities=14%  Similarity=0.116  Sum_probs=74.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|..+.|+..+.. ..+..+.+++|-||||-|+..||.++|+||++.|+++ ..|.+||||||.|+..++.-+++.|+.+
T Consensus       560 eGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~  638 (752)
T KOG0515|consen  560 EGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVES  638 (752)
T ss_pred             cchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhc
Confidence            5788888888864 3467788999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             CCC
Q psy8764          81 NTR   83 (420)
Q Consensus        81 ~~~   83 (420)
                      ++.
T Consensus       639 Gaa  641 (752)
T KOG0515|consen  639 GAA  641 (752)
T ss_pred             cce
Confidence            864

>PHA02792 ankyrin-like protein; Provisional

Probab=98.96  E-value=4.1e-09  Score=113.01  Aligned_cols=84  Identities=7%  Similarity=-0.071  Sum_probs=73.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCC--ChHHHHHHHcCCHH---HHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDG--NTALHLATMENKPK---AICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAAL   75 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G--~TpLHlAa~~g~~~---vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~   75 (420)
                      +|+.+++++|+++|+ +++..|.+|  .||||.|+.++..+   ++++|+++||++ .+|..|.||||.|+..|+.++++
T Consensus       349 ~gn~eIVelLIs~GA-DIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eive  427 (631)
T PHA02792        349 NRDPKVVEYILKNGN-VVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVE  427 (631)
T ss_pred             cCCHHHHHHHHHcCC-chhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHH
Confidence            689999999999876 789888775  69999988876654   578999999999 99999999999999999999999


Q ss_pred             HHHhCCCCccc
Q psy8764          76 AMVTHNTRGTE   86 (420)
Q Consensus        76 ~Ll~~~~~~~~   86 (420)
                      +|+.+++....
T Consensus       428 lLLs~GADIN~  438 (631)
T PHA02792        428 WLIDNGADINI  438 (631)
T ss_pred             HHHHCCCCCCC
Confidence            99999876443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.96  E-value=5.7e-09  Score=95.17  Aligned_cols=110  Identities=16%  Similarity=0.145  Sum_probs=84.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCC-----HHHHHHHHHCCC--cc--cccCCCCcHHHHHHHcCCHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENK-----PKAICLLLSLNC--KL--LYNCMDLSAIDYAIYYKFPE   72 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~-----~~vV~lLL~~Ga--~i--~~n~~g~TpLh~A~~~g~~e   72 (420)
                      .|..++++.++..+. +++..|.+|.||||+|+.+|+     .+++++|++.|+  +.  ..|..|.||||+|+..|+.+
T Consensus        83 ~~~~~~~~~l~~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~  161 (235)
T COG0666          83 KGDDKIVKLLLASGA-DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDAD  161 (235)
T ss_pred             cCcHHHHHHHHHcCC-CcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchH
Confidence            466778888888776 569999999999999999999     999999999999  45  66999999999999999999


Q ss_pred             HHHHHHhCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhh
Q psy8764          73 AALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQD  115 (420)
Q Consensus        73 vv~~Ll~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD  115 (420)
                      +++.++..+.....-.   ..+.+....+.....+++.+.+++
T Consensus       162 ~~~~ll~~~~~~~~~~---~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         162 IVELLLEAGADPNSRN---SYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             HHHHHHhcCCCCcccc---cCCCcchhhhcccchHHHHHHHHh
Confidence            9999999865433321   111222333444444555555554

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=98.95  E-value=1.3e-08  Score=84.37  Aligned_cols=79  Identities=19%  Similarity=0.200  Sum_probs=59.6

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ ..+..|..|.||||+|+..|..+++++|+++|+++ ..+..|.||+|.|+..++.++++.|+.+
T Consensus        17 ~~~~~~i~~li~~~~-~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~   95 (126)
T cd00204          17 NGHLEVVKLLLENGA-DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH   95 (126)
T ss_pred             cCcHHHHHHHHHcCC-CCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            467777777777655 44677777888888888888888888888877777 6677777888888888888888877776


Q ss_pred             C
Q psy8764          81 N   81 (420)
Q Consensus        81 ~   81 (420)
                      +
T Consensus        96 ~   96 (126)
T cd00204          96 G   96 (126)
T ss_pred             C
Confidence            5

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0522|consensus

Probab=98.91  E-value=3.8e-09  Score=108.87  Aligned_cols=100  Identities=21%  Similarity=0.284  Sum_probs=82.1

Q ss_pred             CCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccchhcccCCC
Q psy8764          16 SHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDK   94 (420)
Q Consensus        16 ~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~~~~~   94 (420)
                      +..+|..|..|+||||+|++-||.++++.|+.+||++ .+|+.|+||||.|+..|+..++..++.|-+...         
T Consensus        45 ~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~~~q~---------  115 (560)
T KOG0522|consen   45 SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRHLKYQA---------  115 (560)
T ss_pred             hceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHHhHHHH---------
Confidence            3468999999999999999999999999999999999 999999999999999999999999887653211         


Q ss_pred             CcchHHHHHhhCHHHHHHHhhccccccccCCCCcceeeeechhhc
Q psy8764          95 HPCVTLALVASMPRVFESVQDKSITKANCKKDSKSFYIKYNFSCL  139 (420)
Q Consensus        95 ~~~~~~~li~~~p~~~~~lLD~ci~~~~~~~~~~~~~i~y~f~~L  139 (420)
                          ...+.+.+|+..+.+++           -+|||.+++|.|-
T Consensus       116 ----~~~~~~~~p~ll~~l~~-----------~~DFYmE~~wdF~  145 (560)
T KOG0522|consen  116 ----WEKWERRLPRLLAKLSE-----------MPDFYMEMKWDFQ  145 (560)
T ss_pred             ----HHHHHhcchHHHHHHHh-----------CccceEEEEecce
Confidence                22355677887766553           3578888777654

>KOG0507|consensus

Probab=98.87  E-value=5.1e-09  Score=111.68  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=88.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.|+|+++|.++ +..|.....|.||||+||.+||.++|.+|+++|++. .+|+++.|+|++|++-|+.++++.|+..
T Consensus        92 ~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen   92 NGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             cCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence            68999999999877 478889999999999999999999999999999999 9999999999999999999999999876


Q ss_pred             CCCccchhcccCC-----CCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          81 NTRGTEIMSLRSD-----KHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        81 ~~~~~~~~~~~~~-----~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      +-...........     ...|++++-.+..-++.+.++....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~  213 (854)
T KOG0507|consen  171 KFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGF  213 (854)
T ss_pred             ccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCC
Confidence            3221111100100     1345666666666666666665443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.86  E-value=5.7e-09  Score=95.15  Aligned_cols=79  Identities=23%  Similarity=0.242  Sum_probs=74.0

Q ss_pred             CCHHHHHHHHhcCC--CCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           3 GYTNTMVHLNSVHS--HLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         3 G~~e~ve~LL~~~~--~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      |+.++++.|++.++  ...+..|..|+||||+|+..|+.+++++|++.|+++ ..|..|.||++.|+..|+.+++..++.
T Consensus       122 ~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             chHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHh
Confidence            45999999999888  577788999999999999999999999999999999 889999999999999999999999998


Q ss_pred             CC
Q psy8764          80 HN   81 (420)
Q Consensus        80 ~~   81 (420)
                      .+
T Consensus       202 ~~  203 (235)
T COG0666         202 KG  203 (235)
T ss_pred             cC
Confidence            65

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=98.85  E-value=2.2e-08  Score=80.47  Aligned_cols=83  Identities=12%  Similarity=0.122  Sum_probs=67.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccchhcccCCCCcchHHHHHhhCHHH
Q psy8764          30 LHLATMENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRV  109 (420)
Q Consensus        30 LHlAa~~g~~~vV~lLL~~Ga~i~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~  109 (420)
                      ||.||+.|+.++++.|++.|+++..   |.||||+|+.+|+.++++.|+.++......+   ..+.+..+.+......++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~---~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~---~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL---GNTALHYAAENGNLEIVKLLLENGADINSQD---KNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS---SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BS---TTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC---CCCHHHHHHHcCCHHHHHHHHHhcccccccC---CCCCCHHHHHHHcCCHHH
Confidence            7999999999999999999988833   9999999999999999999999886543322   222444556777788999


Q ss_pred             HHHHhhccc
Q psy8764         110 FESVQDKSI  118 (420)
Q Consensus       110 ~~~lLD~ci  118 (420)
                      ++.+++...
T Consensus        75 ~~~Ll~~g~   83 (89)
T PF12796_consen   75 VKLLLEHGA   83 (89)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHcCC
Confidence            999998644

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG1710|consensus

Probab=98.82  E-value=9.4e-09  Score=99.17  Aligned_cols=86  Identities=16%  Similarity=0.142  Sum_probs=76.3

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc--cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL--LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i--~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|.++-+..||+. ...+|..|.+|+|+|..||..|+.++|++||++|||+  ..+..+-||||.|+.+|+.|+.++|+.
T Consensus        22 Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllld  100 (396)
T KOG1710|consen   22 KNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLD  100 (396)
T ss_pred             cCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHh
Confidence            4678888899985 4579999999999999999999999999999999999  456668999999999999999999999


Q ss_pred             CCCCccchh
Q psy8764          80 HNTRGTEIM   88 (420)
Q Consensus        80 ~~~~~~~~~   88 (420)
                      .|.....+.
T Consensus       101 aGa~~~~vN  109 (396)
T KOG1710|consen  101 AGARMYLVN  109 (396)
T ss_pred             ccCcccccc
Confidence            987765554

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=98.81  E-value=6.1e-08  Score=80.37  Aligned_cols=94  Identities=18%  Similarity=0.162  Sum_probs=74.6

Q ss_pred             CcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccchhcccCCCCcchH
Q psy8764          21 QVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVT   99 (420)
Q Consensus        21 ~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~~~~~~~~~~   99 (420)
                      ..|.+|.||||.|++.|+.++++.|+++|++. ..+..|.||+|.|+..++.++++.|+.++......   ........+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~l~   78 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR---DKDGNTPLH   78 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc---CCCCCCHHH
Confidence            34678999999999999999999999999997 88899999999999999999999999987532221   111122234


Q ss_pred             HHHHhhCHHHHHHHhhcc
Q psy8764         100 LALVASMPRVFESVQDKS  117 (420)
Q Consensus       100 ~~li~~~p~~~~~lLD~c  117 (420)
                      .++.....+.++.++++.
T Consensus        79 ~a~~~~~~~~~~~L~~~~   96 (126)
T cd00204          79 LAARNGNLDVVKLLLKHG   96 (126)
T ss_pred             HHHHcCcHHHHHHHHHcC
Confidence            455566688888888865

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0507|consensus

Probab=98.73  E-value=5.4e-09  Score=111.48  Aligned_cols=84  Identities=21%  Similarity=0.217  Sum_probs=78.0

Q ss_pred             CCCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         1 m~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      |+|+.+++++|++..+ .++..|..|.+|||+||-+|+.++|+.||.++..+ ..+-.|.||||.|+.+||.|++.+|+.
T Consensus        58 Lng~~~is~llle~ea-~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~  136 (854)
T KOG0507|consen   58 LNGQNQISKLLLDYEA-LLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLK  136 (854)
T ss_pred             hcCchHHHHHHhcchh-hhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHh
Confidence            6899999999999876 78999999999999999999999999999999666 889999999999999999999999999


Q ss_pred             CCCCcc
Q psy8764          80 HNTRGT   85 (420)
Q Consensus        80 ~~~~~~   85 (420)
                      +++...
T Consensus       137 ~~adp~  142 (854)
T KOG0507|consen  137 KNADPF  142 (854)
T ss_pred             cCCCcc
Confidence            987543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=98.73  E-value=1.8e-08  Score=74.16  Aligned_cols=44  Identities=27%  Similarity=0.335  Sum_probs=35.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLL   46 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL   46 (420)
                      .|+.++++.|++.+. ++|.+|++|+||||+|++.|+.+++++||
T Consensus        11 ~g~~~~~~~Ll~~~~-din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen   11 SGNLEIVKLLLEHGA-DINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             TT-HHHHHHHHHTTS-GTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             hCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999865 79999999999999999999999999996

...

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=98.70  E-value=7.5e-08  Score=106.71  Aligned_cols=117  Identities=14%  Similarity=0.108  Sum_probs=83.4

Q ss_pred             CCCHHHHHHHHhcC-CCCCCCcCCCCChHHH-HHHHcCCHHHHHHHHHCCCc-----------------c---c------
Q psy8764           2 SGYTNTMVHLNSVH-SHLLDQVDKDGNTALH-LATMENKPKAICLLLSLNCK-----------------L---L------   53 (420)
Q Consensus         2 ~G~~e~ve~LL~~~-~~~in~~D~~G~TpLH-lAa~~g~~~vV~lLL~~Ga~-----------------i---~------   53 (420)
                      .|+.++++.+++.+ ..++|..|..|+|||| .|+.+|+.+++++|+++|+.                 .   +      
T Consensus        27 ~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~  106 (743)
T TIGR00870        27 RGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLA  106 (743)
T ss_pred             cCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHHhh
Confidence            58899999999861 3478889999999999 89999999999999999841                 0   0      


Q ss_pred             -----------------ccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccchhcc-----cC------CCCcchHHHHHhh
Q psy8764          54 -----------------YNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSL-----RS------DKHPCVTLALVAS  105 (420)
Q Consensus        54 -----------------~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~-----~~------~~~~~~~~~li~~  105 (420)
                                       .+..|.||||+|+.+|+.+++++|+.+++..+.-...     ..      .+......+....
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~  186 (743)
T TIGR00870       107 AFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLG  186 (743)
T ss_pred             cccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhC
Confidence                             0124889999999999999999999887655422100     00      0112233455566


Q ss_pred             CHHHHHHHhhccc
Q psy8764         106 MPRVFESVQDKSI  118 (420)
Q Consensus       106 ~p~~~~~lLD~ci  118 (420)
                      .|++++.+++...
T Consensus       187 ~~~iv~lLl~~ga  199 (743)
T TIGR00870       187 SPSIVALLSEDPA  199 (743)
T ss_pred             CHHHHHHHhcCCc
Confidence            7888888887553

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF13606 Ank_3: Ankyrin repeat

Probab=98.68  E-value=2e-08  Score=65.43  Aligned_cols=28  Identities=32%  Similarity=0.485  Sum_probs=26.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCcc
Q psy8764          25 DGNTALHLATMENKPKAICLLLSLNCKL   52 (420)
Q Consensus        25 ~G~TpLHlAa~~g~~~vV~lLL~~Ga~i   52 (420)
                      +|+||||+||+.|+.++|++|+++|+|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            5999999999999999999999999987

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.67  E-value=2.5e-08  Score=66.08  Aligned_cols=31  Identities=35%  Similarity=0.565  Sum_probs=29.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCcc-ccc
Q psy8764          25 DGNTALHLATMENKPKAICLLLSLNCKL-LYN   55 (420)
Q Consensus        25 ~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n   55 (420)
                      +|+||||+||..|+.+++++|+++||++ .+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5999999999999999999999999999 665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0505|consensus

Probab=98.59  E-value=7.2e-08  Score=99.72  Aligned_cols=85  Identities=14%  Similarity=0.152  Sum_probs=77.6

Q ss_pred             CCCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         1 m~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      +.|.++-++.||..++ .+|..+.+|.||||-||...|.++|++|+++|++| ..|..|+||||.|+..||.+++.+|+.
T Consensus        49 ~~~d~~ev~~ll~~ga-~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~  127 (527)
T KOG0505|consen   49 SRGDLEEVRKLLNRGA-SPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQ  127 (527)
T ss_pred             ccccHHHHHHHhccCC-CccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHH
Confidence            3688899999998775 67999999999999999999999999999999999 889999999999999999999999999


Q ss_pred             CCCCccc
Q psy8764          80 HNTRGTE   86 (420)
Q Consensus        80 ~~~~~~~   86 (420)
                      +++.-.+
T Consensus       128 ~gA~~~a  134 (527)
T KOG0505|consen  128 HGANLLA  134 (527)
T ss_pred             hhhhhhh
Confidence            9865433

>KOG4214|consensus

Probab=98.53  E-value=2.5e-07  Score=75.77  Aligned_cols=63  Identities=22%  Similarity=0.179  Sum_probs=56.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYA   65 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A   65 (420)
                      .|..+++++|++-++ +++..|+.|-|||.-|+-+||.++|++||++||+- ....+|.+.+.-+
T Consensus        44 ~GQl~ilefli~iGA-~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   44 YGQLSILEFLISIGA-NIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             cchHHHHHHHHHhcc-ccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            378899999999876 79999999999999999999999999999999999 7888887776644

>KOG1710|consensus

Probab=98.49  E-value=3.2e-07  Score=88.77  Aligned_cols=79  Identities=19%  Similarity=0.225  Sum_probs=72.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.+.++.||+.++...+.++..|.||||+||..|+.++.++|++.||.. ..|.-|+||=..|+.-|+-++|..+-++
T Consensus        55 kGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   55 KGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            699999999999987544578899999999999999999999999999999 9999999999999999999999888665

>KOG0818|consensus

Probab=98.44  E-value=5.4e-07  Score=92.39  Aligned_cols=77  Identities=23%  Similarity=0.246  Sum_probs=69.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcC-CCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVD-KDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D-~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+.++.-.||+.|+ +.|--+ +.|+||||.||+.|...-+++|+-.|||+ ..|.+|+||+.+|-..||-++++.|+.
T Consensus       143 t~nlet~LRll~lGA-~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  143 TGNLETCLRLLSLGA-QANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             cccHHHHHHHHHccc-ccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            477888888999887 677654 67999999999999999999999999999 999999999999999999999998753

>KOG0515|consensus

Probab=98.42  E-value=3.2e-07  Score=94.65  Aligned_cols=76  Identities=16%  Similarity=0.069  Sum_probs=64.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc--cccCCCCcHHHHHH--HcCCHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL--LYNCMDLSAIDYAI--YYKFPEAALAM   77 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i--~~n~~g~TpLh~A~--~~g~~evv~~L   77 (420)
                      .||.+||++|++.++ ++|..|.+||||||.||..++..+++.|+++||.|  ..-.++.||.+-+-  +.|..++.++|
T Consensus       593 aghyeIVkFLi~~ga-nVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL  671 (752)
T KOG0515|consen  593 AGHYEIVKFLIEFGA-NVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYL  671 (752)
T ss_pred             cchhHHHHHHHhcCC-cccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHH
Confidence            599999999999876 79999999999999999999999999999999999  34466888877553  35666777666


Q ss_pred             H
Q psy8764          78 V   78 (420)
Q Consensus        78 l   78 (420)
                      -
T Consensus       672 ~  672 (752)
T KOG0515|consen  672 Y  672 (752)
T ss_pred             H
Confidence            4

>KOG0505|consensus

Probab=98.41  E-value=4.3e-07  Score=94.09  Aligned_cols=77  Identities=19%  Similarity=0.217  Sum_probs=68.0

Q ss_pred             HHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccch
Q psy8764          10 HLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEI   87 (420)
Q Consensus        10 ~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~   87 (420)
                      ..+.. ++..+..+..|-|+||.|+.+|..++.++|+.+|.++ ++|.+|+||||-|+.+|+.+++++|+.|+......
T Consensus       183 q~l~~-G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~  260 (527)
T KOG0505|consen  183 QWLNA-GAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAK  260 (527)
T ss_pred             HHHhc-cccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchh
Confidence            34443 3467888888999999999999999999999999999 99999999999999999999999999998765543

>KOG0705|consensus

Probab=98.39  E-value=6.3e-07  Score=93.35  Aligned_cols=80  Identities=21%  Similarity=0.143  Sum_probs=69.4

Q ss_pred             CHHHHHHHHhcCCCC-CC--CcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           4 YTNTMVHLNSVHSHL-LD--QVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         4 ~~e~ve~LL~~~~~~-in--~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      +..++-+||.++... +|  ..+.+|+||||+||+.|++...++|+=+|+|+ .+|..|.|||.+|-+.|..|++.+|+.
T Consensus       636 Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq  715 (749)
T KOG0705|consen  636 DLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQ  715 (749)
T ss_pred             HHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHH
Confidence            356777888876532 33  35677899999999999999999999999999 999999999999999999999999999


Q ss_pred             CCCC
Q psy8764          80 HNTR   83 (420)
Q Consensus        80 ~~~~   83 (420)
                      ++--
T Consensus       716 ~gcp  719 (749)
T KOG0705|consen  716 YGCP  719 (749)
T ss_pred             cCCC
Confidence            8743

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.36  E-value=2e-06  Score=94.44  Aligned_cols=88  Identities=11%  Similarity=0.043  Sum_probs=72.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccchhcccCCCCcchHHHHHhhC
Q psy8764          28 TALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASM  106 (420)
Q Consensus        28 TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~~~~~~~~~~~~li~~~  106 (420)
                      ++||.||.+|+.++|++|+++|+++ ..|..|.||||+|+.+|+.+++++|+.++...+..+   ..+.+..+.+.....
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d---~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD---KDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCC---CCCCCHHHHHHHCCc
Confidence            3589999999999999999999999 889999999999999999999999999986544322   222333556677778


Q ss_pred             HHHHHHHhhccc
Q psy8764         107 PRVFESVQDKSI  118 (420)
Q Consensus       107 p~~~~~lLD~ci  118 (420)
                      .++++.+++.|.
T Consensus       161 ~~iv~~Ll~~~~  172 (664)
T PTZ00322        161 REVVQLLSRHSQ  172 (664)
T ss_pred             HHHHHHHHhCCC
Confidence            999999998744

>KOG0783|consensus

Probab=98.34  E-value=2.3e-07  Score=99.86  Aligned_cols=97  Identities=21%  Similarity=0.189  Sum_probs=74.6

Q ss_pred             HHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-ccc-CCCCcHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy8764           8 MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYN-CMDLSAIDYAIYYKFPEAALAMVTHNTRGT   85 (420)
Q Consensus         8 ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n-~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~   85 (420)
                      ..++-++..+..|..|..|+||||+|+..|..++++-||+||+|+ .+| .+|.||||-|+.+|+.|+|-.|+.+++--.
T Consensus        34 k~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~  113 (1267)
T KOG0783|consen   34 KGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLR  113 (1267)
T ss_pred             HHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceE
Confidence            334445555567889999999999999999999999999999999 776 469999999999999999999999985322


Q ss_pred             chhcccCCCCcchHHHHHhhCHH
Q psy8764          86 EIMSLRSDKHPCVTLALVASMPR  108 (420)
Q Consensus        86 ~~~~~~~~~~~~~~~~li~~~p~  108 (420)
                      .   .+.+ +.||...+-+-.|+
T Consensus       114 i---~Dke-glsplq~~~r~~~~  132 (1267)
T KOG0783|consen  114 I---KDKE-GLSPLQFLSRVLSS  132 (1267)
T ss_pred             E---eccc-CCCHHHHHhhcccc
Confidence            1   1111 45665554443333

>KOG0506|consensus

Probab=98.31  E-value=5e-07  Score=92.26  Aligned_cols=77  Identities=21%  Similarity=0.211  Sum_probs=66.3

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHC-CCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSL-NCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~-Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      +|+...++.+.-.+. +++..|.+.+|+||.||.+||.+++++|++. +.+. .+|..|+|||+-|..-+|.+++++|-.
T Consensus       516 ~GD~~alrRf~l~g~-D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  516 NGDLSALRRFALQGM-DLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEE  594 (622)
T ss_pred             cCCHHHHHHHHHhcc-cccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHH
Confidence            577777777665444 7899999999999999999999999999975 6777 889999999999999999999998864

>KOG2384|consensus

Probab=98.28  E-value=1.8e-06  Score=79.24  Aligned_cols=65  Identities=22%  Similarity=0.155  Sum_probs=61.4

Q ss_pred             CCCCcCCCCChHHHHHHHcCCHHHHHHHHHCC-Ccc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy8764          18 LLDQVDKDGNTALHLATMENKPKAICLLLSLN-CKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNT   82 (420)
Q Consensus        18 ~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~G-a~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~   82 (420)
                      ++|.+|-.|||||+.||++|..++|.+|+.+| +.+ ..+..|.++..+|-..|+.+++..|.+...
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            68999999999999999999999999999999 788 999999999999999999999999987644

>KOG3676|consensus

Probab=98.26  E-value=1.9e-06  Score=93.19  Aligned_cols=77  Identities=18%  Similarity=0.150  Sum_probs=72.0

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCc--c-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCK--L-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~--i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      +..|++++|+++++ ++|.+|..|||.||.-+..-..++-.++|++|++  . +.|+.|.|||-+|+.-|++++-+.+++
T Consensus       251 nq~eivrlLl~~gA-d~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile  329 (782)
T KOG3676|consen  251 NQPEIVRLLLAHGA-DPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILE  329 (782)
T ss_pred             CCHHHHHHHHhcCC-CCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHH
Confidence            56799999999665 8999999999999999999999999999999999  6 899999999999999999999999987


Q ss_pred             C
Q psy8764          80 H   80 (420)
Q Consensus        80 ~   80 (420)
                      .
T Consensus       330 ~  330 (782)
T KOG3676|consen  330 R  330 (782)
T ss_pred             h
Confidence            6

>KOG3609|consensus

Probab=98.25  E-value=4e-05  Score=83.61  Aligned_cols=82  Identities=18%  Similarity=0.142  Sum_probs=62.3

Q ss_pred             CCCHHHHHHHHhcCC---CCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-------------------c--c---
Q psy8764           2 SGYTNTMVHLNSVHS---HLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-------------------L--Y---   54 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~---~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-------------------~--~---   54 (420)
                      .|+.-.|+..++...   .++|+.|.-|.+|||+|..+.|.+++++|++++..+                   +  .   
T Consensus        35 ~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v~~VE~ll~~~~~~  114 (822)
T KOG3609|consen   35 NGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSVPLVELLLVHFVDA  114 (822)
T ss_pred             cCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHhccccc
Confidence            466767777665432   357888999999999999999999998888875221                   0  0   


Q ss_pred             -------------cCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8764          55 -------------NCMDLSAIDYAIYYKFPEAALAMVTHNTR   83 (420)
Q Consensus        55 -------------n~~g~TpLh~A~~~g~~evv~~Ll~~~~~   83 (420)
                                   -..+.||+.+||..++.|+++.|+..++.
T Consensus       115 ~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen  115 PYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             chhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence                         11367999999999999999999987654

>KOG4369|consensus

Probab=98.19  E-value=9e-07  Score=97.70  Aligned_cols=83  Identities=12%  Similarity=0.073  Sum_probs=75.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc--cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL--LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i--~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      +||.|.+++|+..++ ++...|+.|.+||.+|+-.||..+|+.|+.+.|++  -.|+.+.|+|.+||..|++++|++|+.
T Consensus       767 ggh~e~vellv~rga-niehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~  845 (2131)
T KOG4369|consen  767 GGHREEVELLVVRGA-NIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLN  845 (2131)
T ss_pred             CccHHHHHHHHHhcc-cccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHH
Confidence            799999999999776 68899999999999999999999999999999999  568889999999999999999999998


Q ss_pred             CCCCcc
Q psy8764          80 HNTRGT   85 (420)
Q Consensus        80 ~~~~~~   85 (420)
                      ++..++
T Consensus       846 ~ganke  851 (2131)
T KOG4369|consen  846 AGANKE  851 (2131)
T ss_pred             hhcccc
Confidence            876543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=98.03  E-value=4.1e-06  Score=62.29  Aligned_cols=41  Identities=12%  Similarity=0.202  Sum_probs=23.5

Q ss_pred             HHHCC-Ccc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy8764          45 LLSLN-CKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGT   85 (420)
Q Consensus        45 LL~~G-a~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~   85 (420)
                      ||++| +++ ..|..|.||||+|+.+|+.+++++|+.++....
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~   43 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPN   43 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCC
Confidence            67888 788 899999999999999999999999997665433

>KOG4369|consensus

Probab=98.00  E-value=7.6e-06  Score=90.66  Aligned_cols=113  Identities=19%  Similarity=0.188  Sum_probs=59.4

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc---cccCCCCcHHHHHHHcCCHHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL---LYNCMDLSAIDYAIYYKFPEAALAMV   78 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i---~~n~~g~TpLh~A~~~g~~evv~~Ll   78 (420)
                      +|.+++|++||++++ +-..++-...|||-+|+..|..++++.||++|+.|   ...+.|-+||.+|+.+||.+.++.|+
T Consensus       834 ggr~~vvelLl~~ga-nkehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll  912 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGA-NKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLL  912 (2131)
T ss_pred             CCcchHHHHHHHhhc-cccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHh
Confidence            355555555555544 22334444555666666666666666666666555   23445666666666666666666665


Q ss_pred             hCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcc
Q psy8764          79 THNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKS  117 (420)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~c  117 (420)
                      ..+.+-++--..  ..++...+++...-|++...||++-
T Consensus       913 ~~gsdiNaqIeT--NrnTaltla~fqgr~evv~lLLa~~  949 (2131)
T KOG4369|consen  913 QPGSDINAQIET--NRNTALTLALFQGRPEVVFLLLAAQ  949 (2131)
T ss_pred             cccchhcccccc--ccccceeeccccCcchHHHHHHHHh
Confidence            554433322111  1123334445556677777777653

>KOG0782|consensus

Probab=97.90  E-value=1.2e-05  Score=83.65  Aligned_cols=64  Identities=14%  Similarity=0.073  Sum_probs=49.3

Q ss_pred             CCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc---cccCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy8764          19 LDQVDKDGNTALHLATMENKPKAICLLLSLNCKL---LYNCMDLSAIDYAIYYKFPEAALAMVTHNT   82 (420)
Q Consensus        19 in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i---~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~   82 (420)
                      +-.++.+..|-||+||..|+.++|+++|++|..-   ..+..|.|+||-|+-.++..+..+|+..++
T Consensus       892 ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdaga  958 (1004)
T KOG0782|consen  892 LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGA  958 (1004)
T ss_pred             eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcch
Confidence            4456777888888888888888888888888643   456778888888888888888888887654

>PF13606 Ank_3: Ankyrin repeat

Probab=97.84  E-value=2.3e-05  Score=50.97  Aligned_cols=27  Identities=11%  Similarity=0.017  Sum_probs=24.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8764          57 MDLSAIDYAIYYKFPEAALAMVTHNTR   83 (420)
Q Consensus        57 ~g~TpLh~A~~~g~~evv~~Ll~~~~~   83 (420)
                      +|+||||+|+.+|+.|++++|++++..
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            589999999999999999999998754

>KOG0783|consensus

Probab=97.56  E-value=0.0001  Score=79.97  Aligned_cols=65  Identities=23%  Similarity=0.145  Sum_probs=58.5

Q ss_pred             CCHHHHHHHHhcCCCCCCCcC-CCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHc
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVD-KDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYY   68 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D-~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~   68 (420)
                      |..++++-||++|. +++.+| +.|+||||-|...||.+++-+||++|+.+ +.|++|.+||+.-++-
T Consensus        63 ~k~~~l~wLlqhGi-dv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen   63 NKNSFLRWLLQHGI-DVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             chhHHHHHHHhcCc-eeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhhc
Confidence            56688999999865 778777 57999999999999999999999999999 9999999999988873

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=97.54  E-value=0.00011  Score=48.36  Aligned_cols=29  Identities=14%  Similarity=0.203  Sum_probs=26.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy8764          57 MDLSAIDYAIYYKFPEAALAMVTHNTRGT   85 (420)
Q Consensus        57 ~g~TpLh~A~~~g~~evv~~Ll~~~~~~~   85 (420)
                      +|.||||+|+.+|+.+++++|+.++....
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            58999999999999999999999876543

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PLN03223 Polycystin cation channel protein; Provisional

Probab=97.21  E-value=0.00074  Score=77.08  Aligned_cols=54  Identities=13%  Similarity=0.078  Sum_probs=47.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcc------ccccCCchhHHHHHHHHHHHHhhcc
Q psy8764         332 PLLYICGTAISTYMLFSVAVQSVQIYQQK------WHYLFDPTNIVALLLFFSATIMIVP  385 (420)
Q Consensus       332 ~~~~~~~~~i~~~~~~~i~~E~~Ql~~~~------~~Yf~d~~N~~ew~ly~~si~~v~~  385 (420)
                      ++..+|.++..++.+|.+.+|+.+|+.+|      +.||+++|||+|.+.+.+++..+..
T Consensus      1173 yfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvL 1232 (1634)
T PLN03223       1173 WVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMM 1232 (1634)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHH
Confidence            46778999999999999999999999876      8999999999999999888877653

>smart00248 ANK ankyrin repeats

Probab=97.13  E-value=0.00067  Score=40.72  Aligned_cols=28  Identities=36%  Similarity=0.541  Sum_probs=24.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCcc
Q psy8764          25 DGNTALHLATMENKPKAICLLLSLNCKL   52 (420)
Q Consensus        25 ~G~TpLHlAa~~g~~~vV~lLL~~Ga~i   52 (420)
                      +|.||+|+|+..|+.++++.|+++|.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4789999999999999999999888764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0521|consensus

Probab=97.13  E-value=0.00038  Score=77.41  Aligned_cols=66  Identities=15%  Similarity=0.099  Sum_probs=53.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccchh
Q psy8764          23 DKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIM   88 (420)
Q Consensus        23 D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~   88 (420)
                      =..|.|+||.|+..|...++++||+.|+++ .+|..|.||+|.+...|+...+..++.+++...+..
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~  719 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFD  719 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccC
Confidence            346788888888888888888888888888 888888888888888888888888888776655543

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys

Probab=97.13  E-value=0.00081  Score=70.04  Aligned_cols=88  Identities=20%  Similarity=0.347  Sum_probs=69.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCchhHHHHHHHHHHHHhhccccc--------------c-cc---
Q psy8764         330 LHPLLYICGTAISTYMLFSVAVQSVQIYQQKWHYLFDPTNIVALLLFFSATIMIVPLFT--------------K-GR---  391 (420)
Q Consensus       330 ~~~~~~~~~~~i~~~~~~~i~~E~~Ql~~~~~~Yf~d~~N~~ew~ly~~si~~v~~~~~--------------~-~~---  391 (420)
                      ...+..+|.++.+++.++.+.+|+..+..+|+.||++++|++|+++++++++.+.-...              + ..   
T Consensus       206 ~~~~~~~~~i~f~~~~l~~~~~ei~~i~~~g~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~  285 (425)
T PF08016_consen  206 FDYFVLLCEILFVLFVLYFLYREIKKIRREGRAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVD  285 (425)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCC
Confidence            45567888999999999999999999999999999999999999999998876653210              0 01   


Q ss_pred             ccc-----cchhHHHHHHHHHHHHHHHHhhh
Q psy8764         392 YMT-----DYQISFTSLTVFLSWLTLLLNLQ  417 (420)
Q Consensus       392 ~~~-----~~qw~~ga~aifl~W~~lll~l~  417 (420)
                      +..     .+...+.|+.+|++|++++-++|
T Consensus       286 f~~~a~~~~~~~~l~a~~vfl~~lrll~~l~  316 (425)
T PF08016_consen  286 FQELAQWDQLYRYLLAFLVFLLWLRLLKLLR  316 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            111     22256788999999999998865

Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].

>KOG0511|consensus

Probab=97.12  E-value=0.00088  Score=67.42  Aligned_cols=49  Identities=20%  Similarity=0.207  Sum_probs=27.6

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL   52 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i   52 (420)
                      |+.+.|+.|++.|. ++|+.|...++||.+|+..||.++|++||++||-.
T Consensus        47 GD~d~v~~LVetgv-nVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   47 GDVDRVRYLVETGV-NVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             ccHHHHHHHHHhCC-CcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            55555555555443 45555555555555555555555555555555544

>KOG0782|consensus

Probab=97.10  E-value=0.0015  Score=68.56  Aligned_cols=79  Identities=22%  Similarity=0.216  Sum_probs=72.8

Q ss_pred             CCCHHHHHHHHhcCCC-CCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSH-LLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~-~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+-++|+++|++++. .+|..|+.|.|+||-||..++..+.++|++.||.+ ..|..|.||-.-|...|.+|++.+|-+
T Consensus       909 tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  909 TGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             cCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            4888999999999864 58899999999999999999999999999999999 889999999999999999999988854


Q ss_pred             C
Q psy8764          80 H   80 (420)
Q Consensus        80 ~   80 (420)
                      .
T Consensus       989 r  989 (1004)
T KOG0782|consen  989 R  989 (1004)
T ss_pred             h
Confidence            3

>KOG0818|consensus

Probab=96.98  E-value=0.0034  Score=65.12  Aligned_cols=70  Identities=17%  Similarity=0.019  Sum_probs=59.7

Q ss_pred             CCCcCCCCCh------HHHHHHHcCCHHHHHHHHHCCCcc-c-ccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccchh
Q psy8764          19 LDQVDKDGNT------ALHLATMENKPKAICLLLSLNCKL-L-YNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIM   88 (420)
Q Consensus        19 in~~D~~G~T------pLHlAa~~g~~~vV~lLL~~Ga~i-~-~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~   88 (420)
                      ...+|++|.|      -||-.++.|+.++.--||..||+. - --..|.||||+|+..|+..-+++|+-.|++..+.+
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d  197 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQD  197 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCC
Confidence            3456777766      499999999999999999999999 3 34679999999999999999999999988766554

>KOG0520|consensus

Probab=96.86  E-value=0.00042  Score=77.25  Aligned_cols=72  Identities=21%  Similarity=0.143  Sum_probs=36.8

Q ss_pred             HHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc--cc-----cCCCCcHHHHHHHcCCHHHHHHH
Q psy8764           6 NTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL--LY-----NCMDLSAIDYAIYYKFPEAALAM   77 (420)
Q Consensus         6 e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i--~~-----n~~g~TpLh~A~~~g~~evv~~L   77 (420)
                      +.+-+|...++..+|-.|..|+||||+|+..||..++..|.+.|++.  ..     +..|.|+-.+|..+|+..++.+|
T Consensus       621 ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~l  699 (975)
T KOG0520|consen  621 EWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYL  699 (975)
T ss_pred             ceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHH
Confidence            33333333334445555555555555555555555555555555443  11     12355555555555555555554

>KOG0506|consensus

Probab=96.86  E-value=0.0012  Score=68.05  Aligned_cols=59  Identities=14%  Similarity=0.041  Sum_probs=54.2

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764          22 VDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus        22 ~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .+.++-.++++||++|...+.+-+.-.|.|+ ..|.+.+|+||+|+..|+.+++++|++.
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~  561 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNA  561 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHH
Confidence            3455677999999999999999999999999 9999999999999999999999999975

>KOG0521|consensus

Probab=96.71  E-value=0.001  Score=74.09  Aligned_cols=78  Identities=21%  Similarity=0.244  Sum_probs=69.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|..-+++.||+.++ ++|..|..|+||||.+...||...+.+|+++||+. +.+.+|.+|+++|....+.|.+-++...
T Consensus       666 ~~~~~~~e~ll~~ga-~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  666 TGDSGAVELLLQNGA-DVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANADIVLLLRLA  744 (785)
T ss_pred             cchHHHHHHHHhcCC-cchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccccHHHHHhhh
Confidence            456678899999766 69999999999999999999999999999999999 9999999999999887887777666443

>KOG0511|consensus

Probab=96.70  E-value=0.0029  Score=63.81  Aligned_cols=58  Identities=10%  Similarity=0.050  Sum_probs=53.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCc
Q psy8764          27 NTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRG   84 (420)
Q Consensus        27 ~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~   84 (420)
                      +--|-.||+.|..+.|+.|++.|.++ ..|+...+||.+|+-.||.++|++|+.+|+-.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            34588999999999999999999999 99999999999999999999999999998643

>KOG2505|consensus

Probab=96.30  E-value=0.007  Score=62.98  Aligned_cols=53  Identities=15%  Similarity=0.163  Sum_probs=45.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHH
Q psy8764          23 DKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMV   78 (420)
Q Consensus        23 D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll   78 (420)
                      |.---|+||+||.+|..++|..||+.|||. ++|..|.||..++.   ++||-...+
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence            334679999999999999999999999999 99999999999996   666655544

>KOG0520|consensus

Probab=96.02  E-value=0.0036  Score=70.02  Aligned_cols=85  Identities=8%  Similarity=0.089  Sum_probs=63.7

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHH-HCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLL-SLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL-~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      ||.-.++.+++-.....+..|.+|.-.+|++|. ||.+.+-+|+ -.|..+ .+|..|+||||+|+..|+..++..|+.-
T Consensus       585 lyawLie~~~e~~~~~~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~l  663 (975)
T KOG0520|consen  585 LYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA-LGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIEL  663 (975)
T ss_pred             hHHHHHHHHhcccccCchhhcccCCChhhHhhh-cCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHh
Confidence            455666777764233566778888888899444 5555555444 568888 8999999999999999999999999988


Q ss_pred             CCCccchh
Q psy8764          81 NTRGTEIM   88 (420)
Q Consensus        81 ~~~~~~~~   88 (420)
                      ++....+.
T Consensus       664 ga~~~~~t  671 (975)
T KOG0520|consen  664 GADPGAVT  671 (975)
T ss_pred             cccccccc
Confidence            77665443

>KOG3599|consensus

Probab=95.22  E-value=0.042  Score=61.56  Aligned_cols=88  Identities=16%  Similarity=0.344  Sum_probs=65.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccCCchhHHHHHHHHHHHHhhcccc--------------c-cc-c-
Q psy8764         330 LHPLLYICGTAISTYMLFSVAVQSVQIYQQKW-HYLFDPTNIVALLLFFSATIMIVPLF--------------T-KG-R-  391 (420)
Q Consensus       330 ~~~~~~~~~~~i~~~~~~~i~~E~~Ql~~~~~-~Yf~d~~N~~ew~ly~~si~~v~~~~--------------~-~~-~-  391 (420)
                      ..++..+|.++..++.++.++-|+.++.+++. +|+++.+|++||++...+++.++-..              . ++ . 
T Consensus       461 ~~~~~~l~~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f  540 (798)
T KOG3599|consen  461 GSSLIMLCEVVFLLFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTF  540 (798)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            45567778888888889999999999996665 99999999999999999877665311              0 10 1 


Q ss_pred             --ccccchhH-----HHHHHHHHHHHHHHHhhh
Q psy8764         392 --YMTDYQIS-----FTSLTVFLSWLTLLLNLQ  417 (420)
Q Consensus       392 --~~~~~qw~-----~ga~aifl~W~~lll~l~  417 (420)
                        +..-.||+     +.|+++||.|+.+.=++|
T Consensus       541 ~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~  573 (798)
T KOG3599|consen  541 IDFTEVAQWNIAARNLLAFLVFLTTIKLWKVLR  573 (798)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              22344554     467899999999876654

>smart00248 ANK ankyrin repeats

Probab=95.00  E-value=0.044  Score=32.31  Aligned_cols=27  Identities=7%  Similarity=-0.031  Sum_probs=24.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8764          57 MDLSAIDYAIYYKFPEAALAMVTHNTR   83 (420)
Q Consensus        57 ~g~TpLh~A~~~g~~evv~~Ll~~~~~   83 (420)
                      .|.||+|.|+..|+.++++.++.++.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            478999999999999999999987653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0522|consensus

Probab=94.54  E-value=0.049  Score=57.27  Aligned_cols=47  Identities=19%  Similarity=0.139  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHC
Q psy8764           1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSL   48 (420)
Q Consensus         1 m~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~   48 (420)
                      |-||.+.++.|+++|+ ++..+|++||+|||-|+..|+.+++.-+|.+
T Consensus        64 ~Lg~~~~a~~Ll~a~A-dv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   64 RLGHVEAARILLSAGA-DVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             HhcCHHHHHHHHhcCC-CccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            4589999999999887 7888999999999999999999999888765

>KOG2384|consensus

Probab=93.35  E-value=0.2  Score=46.58  Aligned_cols=52  Identities=15%  Similarity=0.120  Sum_probs=48.1

Q ss_pred             CCCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc
Q psy8764           1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL   52 (420)
Q Consensus         1 m~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i   52 (420)
                      |.|..+.+.+|+..+.+.+-.+|+.|.+++.+|-++|+.++|..|.+...+.
T Consensus        21 ~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen   21 MEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             hhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            5789999999999997789999999999999999999999999999886665

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=93.12  E-value=0.34  Score=43.30  Aligned_cols=74  Identities=12%  Similarity=0.115  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHhcc---ccccCCchhHHHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHHhhhc
Q psy8764         342 STYMLFSVAVQSVQIYQQK---WHYLFDPTNIVALLLFFSATIMIVPLFTKGRYMTDYQISFTSLTVFLSWLTLLLNLQS  418 (420)
Q Consensus       342 ~~~~~~~i~~E~~Ql~~~~---~~Yf~d~~N~~ew~ly~~si~~v~~~~~~~~~~~~~qw~~ga~aifl~W~~lll~l~r  418 (420)
                      ++..++.++.++.+++..+   .+|+.+++|++|....+.+++.+.+...+  . .+.+ ...+++-.+-|++++.++++
T Consensus         4 ~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~l~~~R~l~~~~~   79 (200)
T PF00520_consen    4 IIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYG--S-ASAQ-SLLRIFRLLRLLRLLRLLRR   79 (200)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS-----HHC-HCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccc--c-cccc-ceEEEEEeeccccccccccc
Confidence            4555677789999999888   59999999999998888876666554432  1 1113 45566666899999888776


Q ss_pred             c
Q psy8764         419 L  419 (420)
Q Consensus       419 f  419 (420)
                      +
T Consensus        80 ~   80 (200)
T PF00520_consen   80 F   80 (200)
T ss_dssp             T
T ss_pred             c
Confidence            5

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG0705|consensus

Probab=92.83  E-value=0.14  Score=54.49  Aligned_cols=50  Identities=24%  Similarity=0.178  Sum_probs=44.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL   52 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i   52 (420)
                      .|++...++|+=.+. ++-..|..|+|||.||-.+|..+++..||.+|+--
T Consensus       671 ~gnVvl~QLLiWyg~-dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  671 KGNVVLAQLLIWYGV-DVMARDAHGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hcchhHHHHHHHhCc-cceecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            378888888886554 78889999999999999999999999999999854

>KOG3609|consensus

Probab=91.89  E-value=0.23  Score=55.11  Aligned_cols=81  Identities=11%  Similarity=0.136  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc-cccCCchhHHHHH---HHHHHHHhhccccc---c---ccc-cccch--------
Q psy8764         337 CGTAISTYMLFSVAVQSVQIYQQKW-HYLFDPTNIVALL---LFFSATIMIVPLFT---K---GRY-MTDYQ--------  397 (420)
Q Consensus       337 ~~~~i~~~~~~~i~~E~~Ql~~~~~-~Yf~d~~N~~ew~---ly~~si~~v~~~~~---~---~~~-~~~~q--------  397 (420)
                      -.++|+.+.+-++.-|+-|++..++ .|+.+++|++|.+   +|+++++.-...+.   .   ..+ +..|.        
T Consensus       386 vE~li~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~  465 (822)
T KOG3609|consen  386 LEILIYLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLA  465 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHH
Confidence            3467888888899999999999985 9999999999975   56665554332221   0   001 12222        


Q ss_pred             hHHHHHHHHHHHHHHHHhhh
Q psy8764         398 ISFTSLTVFLSWLTLLLNLQ  417 (420)
Q Consensus       398 w~~ga~aifl~W~~lll~l~  417 (420)
                      =.+-|+|..||...++-+++
T Consensus       466 E~lfAiA~V~S~lrl~~i~t  485 (822)
T KOG3609|consen  466 EGLFAIANVLSFLKLFYIFT  485 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            35778999999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	420
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 66/448 (14%), Positives = 138/448 (30%), Gaps = 136/448 (30%)

Query: 3   GYTNT----MVHLNSVHSHL----LDQVDKDGNTALHLAT--------MENKPKAICLL- 45
              N+    +  L  +   +      + D   N  L + +        +++KP   CLL 
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 46  ------------LSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSL--- 90
                        +L+CK+L         D+         +L   +      E+ SL   
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 91  ----RSDKHP---CVTLALVASMPRVFESVQDKSIT-----KANCKKDSKSFYIKYNFSC 138
               R    P     T     S+  + ES++D   T       NC K +    I+   S 
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTI--IE---SS 362

Query: 139 LQCLRIYPEINEKTGDATAI---SKPIPLPAL-----NNTALHLATISHHFYRPTFLDRN 190
           L  L   P    K  D  ++   S  IP   L     +     +  + +  ++ + +++ 
Sbjct: 363 LNVL--EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 191 ---LALFFHNCVFVGSNPTPTLFLQVLLHTELERNLPKFLLEKVDKMEIYEYPNECKGKL 247
                +   +           ++L++ +  E E  L + +++       Y  P       
Sbjct: 421 PKESTISIPS-----------IYLELKVKLENEYALHRSIVDH------YNIP------- 456

Query: 248 GFLDLVIRKWFCNPFTEDAIDMV--------LESNGNDVFTDEIDKLKRKLNEIQIHLDH 299
                  + +  +      +D          L++  +    + +   +       + LD 
Sbjct: 457 -------KTFDSDDLIPPYLDQYFYSHIGHHLKNIEH---PERMTLFRM------VFLD- 499

Query: 300 QFMFLRLIVHKMDIKTETDERDEGTSSNKELHPLL----YICGTA------ISTYMLFSV 349
            F FL     K  I+ ++   +   S    L  L     YIC         ++  + F  
Sbjct: 500 -FRFLE---QK--IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553

Query: 350 AVQSVQIYQQKWHYLFDPTNIVALLLFF 377
            ++   +   K+      T+++ + L  
Sbjct: 554 KIEE-NLICSKY------TDLLRIALMA 574

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 19  LDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMD---LSAIDYAI 66
           LD    DGNTALH A + N+P  + LLL          ++    +A+D A 
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRAL--VGTVNEAGETALDIAR 267

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 8   MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAI 66
           +V     +S  LD+    G+TALH   + +  + + LLL     + + N    + +D A 
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 19  LDQVDKDGNTALHLATMENKPKAICLLLSLNCKL 52
           LD    DGNTALH A + N+P  + LLL     +
Sbjct: 200 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 233

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 8   MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAI 66
            + L  + +++L+  D +G+T L++A        +  LL       + N   L  +D+  
Sbjct: 265 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	420
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.68
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.67
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.67
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.63
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.63
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.6
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.59
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.59
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.59
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.59
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.58
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.58
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.58
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.57
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.57
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.56
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.56
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.56
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.55
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.55
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.55
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.54
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.54
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.54
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.54
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.54
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.53
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.53
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.53
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.52
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.52
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.52
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.52
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.52
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.52
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.51
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.51
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.51
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.51
2rfa_A	232	Transient receptor potential cation channel subfa	99.51
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.51
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.5
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.5
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.5
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.5
2rfa_A	232	Transient receptor potential cation channel subfa	99.49
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.49
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.49
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.49
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.48
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.48
2etb_A	256	Transient receptor potential cation channel subfam	99.48
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.48
2pnn_A	273	Transient receptor potential cation channel subfa	99.47
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.47
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.47
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.47
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.47
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.47
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.47
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.47
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.47
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.47
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.46
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.46
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.46
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.46
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.45
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.45
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.45
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.45
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.44
2etb_A	256	Transient receptor potential cation channel subfam	99.44
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.43
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.43
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.43
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.43
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.43
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.43
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.43
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.42
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.42
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.42
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.42
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.42
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.42
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.41
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.41
2pnn_A	273	Transient receptor potential cation channel subfa	99.41
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.41
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.4
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.4
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.4
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.4
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.39
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.36
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.36
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.36
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.35
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.34
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.32
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.32
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.31
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.31
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.28
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.27
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.26
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.1
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.08

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.68  E-value=2e-16  Score=126.50  Aligned_cols=80  Identities=19%  Similarity=0.208  Sum_probs=75.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++ ++|.+|.+|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        12 ~~~~~~v~~Ll~~g~-~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~   90 (93)
T 1n0q_A           12 NGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA   90 (93)
T ss_dssp             HTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            588999999999776 79999999999999999999999999999999999 8999999999999999999999999988


Q ss_pred             CC
Q psy8764          81 NT   82 (420)
Q Consensus        81 ~~   82 (420)
                      ++
T Consensus        91 ga   92 (93)
T 1n0q_A           91 GA   92 (93)
T ss_dssp             TC
T ss_pred             CC
Confidence            74

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.67  E-value=6.3e-16  Score=138.91  Aligned_cols=128  Identities=15%  Similarity=0.148  Sum_probs=101.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++|+.||+.++ ++|.+|.+|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+.+|+.+++++|+.+
T Consensus        14 ~G~~~~v~~Ll~~Ga-dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~   92 (169)
T 4gpm_A           14 NGNKDRVKDLIENGA-DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK   92 (169)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            699999999999776 79999999999999999999999999999999999 8899999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccccccccC-CCCcceeee
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKANCK-KDSKSFYIK  133 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~~~~~-~~~~~~~i~  133 (420)
                      +...+..   +..+.+..+.+......++++.++++.......+ .+.+..++.
T Consensus        93 gadvn~~---d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A  143 (169)
T 4gpm_A           93 GADVNAK---DSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLA  143 (169)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            7654332   2222334556777778899999998876544322 333444443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.67  E-value=9.3e-16  Score=137.78  Aligned_cols=113  Identities=18%  Similarity=0.163  Sum_probs=95.3

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ +++.+|.+|+||||+||..|+.++|++|+++|+++ .+|..|+||||+|+.+|+.+++++|+.+
T Consensus        47 ~~~~~~~~~ll~~ga-d~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~  125 (169)
T 4gpm_A           47 NGHKEVVKLLISKGA-DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK  125 (169)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHhccc-chhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            588999999999876 79999999999999999999999999999999999 9999999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      +......   +..+.+....+.....+++++.++++..
T Consensus       126 gad~~~~---d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A          126 GADVNTS---DSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             CCCcccc---CCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            8654432   2222333445677778999999997554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.63  E-value=2.8e-15  Score=130.01  Aligned_cols=110  Identities=16%  Similarity=0.107  Sum_probs=64.0

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      |+.++++.|++..+.+++..|..|+||||+ |..|+.+++++|+++|+++ ..|..|.||||.|+..|+.++++.|+.++
T Consensus        13 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   91 (156)
T 1bd8_A           13 GDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG   91 (156)
T ss_dssp             TCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            566666666665333556666666666666 6666666666666666666 66666666666666666666666666655


Q ss_pred             CCccchhcccCCCCcchHHHHHhhCHHHHHHHhhc
Q psy8764          82 TRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDK  116 (420)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~  116 (420)
                      ......   +..+.+..+.+......++++.+++.
T Consensus        92 ~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           92 ADVNVP---DGTGALPIHLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             CCSCCC---CTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             CCCCCc---CCCCCcHHHHHHHhChHHHHHHHHhc
Confidence            432221   11112223344555556666666655

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.63  E-value=2.9e-15  Score=127.95  Aligned_cols=110  Identities=15%  Similarity=0.175  Sum_probs=93.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ ++|..|..|+||||+||..|+.+++++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        24 ~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  102 (136)
T 2jab_A           24 AGQDDEVRILMANGA-DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH  102 (136)
T ss_dssp             HTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            589999999999876 78999999999999999999999999999999999 8999999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhh
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQD  115 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD  115 (420)
                      +......   +..+.+....+......++++.+++
T Consensus       103 g~~~~~~---~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A          103 GADVNAQ---DKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCcCc---CCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            7653322   2222333455666778888888775

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.60  E-value=1.6e-14  Score=128.69  Aligned_cols=115  Identities=14%  Similarity=0.117  Sum_probs=98.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++.+++..|..|+||||+||..|+.++|++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        15 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   94 (179)
T 3f6q_A           15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY   94 (179)
T ss_dssp             HTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            589999999999878789999999999999999999999999999999999 8999999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      +......+   ..+.+..+.+.....+++++.++++...
T Consensus        95 g~~~~~~d---~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  130 (179)
T 3f6q_A           95 KADINAVN---EHGNVPLHYACFWGQDQVAEDLVANGAL  130 (179)
T ss_dssp             TCCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCccC---CCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            76543322   2223345566677789999999986543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.59  E-value=3.2e-15  Score=127.63  Aligned_cols=111  Identities=13%  Similarity=0.050  Sum_probs=92.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCC-CCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCM-DLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~-g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+.++++.|++.++ ++|..|..|+||||+|+. |+.++|++|+++|+++ ..|.. |.||||+|+..|+.+++++|+.
T Consensus        22 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   99 (136)
T 1d9s_A           22 RGQVETVRQLLEAGA-DPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR   99 (136)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCC-CcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            689999999999875 799999999999999999 9999999999999999 88988 9999999999999999999999


Q ss_pred             CCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcc
Q psy8764          80 HNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKS  117 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~c  117 (420)
                      ++......+   ..+.+....+......++++.++++.
T Consensus       100 ~ga~~~~~d---~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A          100 AGARLDVCD---AWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             TCCCCCCCS---SSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cCCCCCccC---CCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            876543322   22233344566677888888888754

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.59  E-value=2.1e-14  Score=126.93  Aligned_cols=113  Identities=15%  Similarity=0.195  Sum_probs=96.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ ++|..|.+|+||||+|+..|+.++|++|+++|+++ ..|..|.||||.|+..|+.++++.|+.+
T Consensus        24 ~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  102 (169)
T 2y1l_E           24 AGRDDEVRILMANGA-DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN  102 (169)
T ss_dssp             HTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            589999999999876 78999999999999999999999999999999999 8999999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      +......   +..+.+..+.+......++++.++++..
T Consensus       103 g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  137 (169)
T 2y1l_E          103 GADVNAN---DMEGHTPLHLAAMFGHLEIVEVLLKNGA  137 (169)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            7653322   1222334555677788999999998654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.59  E-value=1.2e-14  Score=126.53  Aligned_cols=113  Identities=16%  Similarity=0.141  Sum_probs=73.3

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ +++..|..|+||||+|+. |+.+++++|+++|+++ ..|..|.||||.|+..|+.++++.|+.+
T Consensus        15 ~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   92 (162)
T 1ihb_A           15 RGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF   92 (162)
T ss_dssp             HTCHHHHHHHTTSCC-CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCC-CccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            367777777776554 567777777777777777 7777777777777777 6677777777777777777777777776


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      +......   +..+.+..+.+.....+++++.+++++..
T Consensus        93 g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A           93 QADVNIE---DNEGNLPLHLAAKEGHLRVVEFLVKHTAS  128 (162)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             CCCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHHccCC
Confidence            5432221   11112233445555667777777766553

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.59  E-value=6e-15  Score=123.58  Aligned_cols=82  Identities=11%  Similarity=0.131  Sum_probs=77.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ ++|..|..|+||||+||..|+.++|++|+++|+++ ..|..|.||||+|+..|+.+++++|+.+
T Consensus        17 ~~~~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~   95 (123)
T 3aaa_C           17 NGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK   95 (123)
T ss_dssp             TTCHHHHHHHHHTTC-CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCC-CcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            689999999999876 78999999999999999999999999999999999 8999999999999999999999999998


Q ss_pred             CCCc
Q psy8764          81 NTRG   84 (420)
Q Consensus        81 ~~~~   84 (420)
                      +...
T Consensus        96 ga~~   99 (123)
T 3aaa_C           96 GADK   99 (123)
T ss_dssp             TCCT
T ss_pred             CCCC
Confidence            7653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.58  E-value=7.9e-15  Score=128.52  Aligned_cols=117  Identities=18%  Similarity=0.118  Sum_probs=97.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++...+..|..|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        18 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   97 (165)
T 3twr_A           18 AGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH   97 (165)
T ss_dssp             HTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhC
Confidence            488999999998777778888999999999999999999999999999999 8899999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKA  121 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~~  121 (420)
                      +......+   ..+.+..+.+.....+++++.++++.....
T Consensus        98 g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  135 (165)
T 3twr_A           98 GAVVNVAD---LWKFTPLHEAAAKGKYEICKLLLQHGADPT  135 (165)
T ss_dssp             TCCTTCCC---TTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCcC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            76543321   222333556677778999999998866543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.58  E-value=1.7e-14  Score=127.31  Aligned_cols=116  Identities=12%  Similarity=0.086  Sum_probs=86.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++..++..|..|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+.+|+.++++.|+.+
T Consensus        12 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   91 (172)
T 3v30_A           12 QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLER   91 (172)
T ss_dssp             TTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHc
Confidence            578888888888777557888888888888888888888888888888888 7788888888888888888888888887


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK  120 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~  120 (420)
                      +......   +..+.+..+.+......++++.++++....
T Consensus        92 g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  128 (172)
T 3v30_A           92 DVDINIY---DWNGGTPLLYAVRGNHVKCVEALLARGADL  128 (172)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            6543321   122233344566667788888888765543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.58  E-value=1.8e-14  Score=127.06  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=97.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        46 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  124 (172)
T 3v30_A           46 FGEIETVRFLLEWGA-DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR  124 (172)
T ss_dssp             TTCHHHHHHHHHHTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCC-CchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            689999999999876 78999999999999999999999999999999999 8999999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK  120 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~  120 (420)
                      +......   +..+.+....+.....+++++.++++....
T Consensus       125 ga~~~~~---~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A          125 GADLTTE---ADSGYTPMDLAVALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCcccc---CCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            7654322   222233345567778899999999876543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.57  E-value=3e-14  Score=124.83  Aligned_cols=110  Identities=12%  Similarity=0.019  Sum_probs=90.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++ +++..|.+|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+.+|+.++++.|+.+
T Consensus        52 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  130 (165)
T 3twr_A           52 YNRVSVVEYLLQHGA-DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH  130 (165)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cChHHHHHHHHhcCC-CCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            689999999999876 79999999999999999999999999999999999 8999999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDK  116 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~  116 (420)
                      +......+    ..+.+|..-..+...++++.++++
T Consensus       131 ga~~~~~~----~~g~t~l~~a~~~~~~i~~~L~~~  162 (165)
T 3twr_A          131 GADPTKKN----RDGNTPLDLVKDGDTDIQDLLRGD  162 (165)
T ss_dssp             TCCTTCCC----TTSCCTGGGSCTTCHHHHHHHHTC
T ss_pred             CCCCcccC----CCCCChhHhHhcCChHHHHHHhhc
Confidence            76543322    113334333344566777777654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.57  E-value=2.7e-14  Score=125.37  Aligned_cols=113  Identities=12%  Similarity=0.107  Sum_probs=95.4

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ +++..|..|+||||+|+..|+.++|++|+++|+++ ..|..|.||||.|+.+|+.++++.|+.+
T Consensus        13 ~g~~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   91 (167)
T 3v31_A           13 QGEMLYLATRIEQEN-VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC   91 (167)
T ss_dssp             TTCHHHHHHHHHHSS-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCC-CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence            689999999999875 79999999999999999999999999999999999 8899999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      +......   +..+.+..+.+.....+++++.++++..
T Consensus        92 g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  126 (167)
T 3v31_A           92 GVDVNEY---DWNGGTPLLYAVHGNHVKCVKMLLESGA  126 (167)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCcC---CCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            7543322   1222333455677778999999997544

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.56  E-value=2.6e-14  Score=124.00  Aligned_cols=115  Identities=15%  Similarity=0.077  Sum_probs=93.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ +++ .|..|.||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        12 ~g~~~~v~~Ll~~g~-~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   89 (153)
T 1awc_B           12 AGQDDEVRILMANGA-PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH   89 (153)
T ss_dssp             HTCHHHHHHHHHHTC-CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHcCC-CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHc
Confidence            488999999999876 444 6889999999999999999999999999999 8899999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKA  121 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~~  121 (420)
                      +......   +..+.+..+.+.....+++++.++++.....
T Consensus        90 g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  127 (153)
T 1awc_B           90 GADVNAK---DMLKMTALHWATEHNHQEVVELLIKYGADVH  127 (153)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            7654322   1222333455666778899999998866543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.56  E-value=3.2e-14  Score=124.86  Aligned_cols=114  Identities=14%  Similarity=0.128  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        46 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  124 (167)
T 3v31_A           46 HGQIAVVEFLLQNGA-DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES  124 (167)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            689999999999865 78999999999999999999999999999999999 8999999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      +......   +..+.+....+.....+++++.++++...
T Consensus       125 g~~~~~~---~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          125 GADPTIE---TDSGYNSMDLAVALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCCCc---CCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence            7654332   12223334456677788999888876543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.56  E-value=4.7e-14  Score=124.62  Aligned_cols=110  Identities=14%  Similarity=0.134  Sum_probs=92.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        57 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  135 (169)
T 2y1l_E           57 NGHLEIVEVLLKNGA-DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN  135 (169)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            689999999999775 78999999999999999999999999999999999 8999999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhh
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQD  115 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD  115 (420)
                      +......   +..+.+....+......++++.+++
T Consensus       136 g~~~~~~---~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          136 GADVNAQ---DKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCCCc---CCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            7653322   1122233445566677888877775

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.55  E-value=5.2e-14  Score=116.50  Aligned_cols=112  Identities=16%  Similarity=0.150  Sum_probs=93.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ +++..|..|.||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        12 ~~~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~   90 (126)
T 1n0r_A           12 NGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA   90 (126)
T ss_dssp             HTCHHHHHHHHHHTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHc
Confidence            488999999999876 78999999999999999999999999999999999 8899999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKS  117 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~c  117 (420)
                      +......   +..+.+....+......++++.++++.
T Consensus        91 g~~~~~~---~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           91 GADVNAK---DKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCCCccc---CCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            7643321   112223344456667788888888753

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.55  E-value=3.4e-14  Score=126.50  Aligned_cols=113  Identities=15%  Similarity=0.123  Sum_probs=90.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ +++..|..|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        49 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  127 (179)
T 3f6q_A           49 EGRSAVVEMLIMRGA-RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN  127 (179)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            689999999999875 79999999999999999999999999999999999 8999999999999999999999999999


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      +.......   ..+.+....+......++++.+++...
T Consensus       128 ga~~~~~~---~~g~tpl~~A~~~~~~~~~~~L~~~g~  162 (179)
T 3f6q_A          128 GALVSICN---KYGEMPVDKAKAPLRELLRERAEKMGQ  162 (179)
T ss_dssp             TCCSSBCC---TTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CCCcchhc---cCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            86544322   111122222333444566677776544

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.55  E-value=3.5e-14  Score=127.67  Aligned_cols=115  Identities=16%  Similarity=0.191  Sum_probs=86.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ +++..|..|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        45 ~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (192)
T 2rfm_A           45 LGMENAIDKLVENFD-KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH  123 (192)
T ss_dssp             HTCGGGHHHHHHHHC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHhcc-ccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence            477888888888765 67888888888888888888888888888888888 7788888888888888888888888887


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK  120 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~  120 (420)
                      +......   +..+.+..+.+......++++.++++....
T Consensus       124 g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  160 (192)
T 2rfm_A          124 GANVNDR---NLEGETPLIVASKYGRSEIVKKLLELGADI  160 (192)
T ss_dssp             TCCSSCC---CTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            6543322   122233344566667788888888775544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.54  E-value=2.2e-14  Score=122.44  Aligned_cols=79  Identities=22%  Similarity=0.152  Sum_probs=74.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++ ++|..|.+|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+.+|+.+++++|+++
T Consensus        57 ~~~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           57 HGHLEIVEVLLKNGA-DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHcCC-CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            488999999999866 79999999999999999999999999999999999 8999999999999999999999999876


Q ss_pred             C
Q psy8764          81 N   81 (420)
Q Consensus        81 ~   81 (420)
                      +
T Consensus       136 G  136 (136)
T 2jab_A          136 N  136 (136)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.54  E-value=1.1e-14  Score=124.23  Aligned_cols=79  Identities=14%  Similarity=0.046  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCC-CChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKD-GNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~-G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      |+.++++.|++.++ +++..|.. |+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+.+|+.+++++|+++
T Consensus        55 ~~~~~v~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           55 GSAQVAELLLLHGA-EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             SCHHHHHHHHHHTC-CSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            78999999999876 79999999 999999999999999999999999999 8999999999999999999999999987


Q ss_pred             CC
Q psy8764          81 NT   82 (420)
Q Consensus        81 ~~   82 (420)
                      +.
T Consensus       134 Ga  135 (136)
T 1d9s_A          134 TG  135 (136)
T ss_dssp             HC
T ss_pred             CC
Confidence            64

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.54  E-value=7.6e-14  Score=121.08  Aligned_cols=107  Identities=15%  Similarity=0.115  Sum_probs=87.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+.+|+.+++++|+.+
T Consensus        44 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  122 (153)
T 1awc_B           44 YGHFSTTEVLLRAGV-SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY  122 (153)
T ss_dssp             HTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            488999999999776 78999999999999999999999999999999999 8999999999999999999999999999


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHH
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFES  112 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~  112 (420)
                      +.......   ..+.+....+......++++.
T Consensus       123 ga~~~~~~---~~g~t~l~~A~~~~~~~i~~~  151 (153)
T 1awc_B          123 GADVHTQS---KFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             TCCTTCCC---TTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCCccccC---CCCCCHHHHHHHcCCHHHHHH
Confidence            76543221   121222334555556665544

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.54  E-value=2.4e-14  Score=118.37  Aligned_cols=75  Identities=23%  Similarity=0.255  Sum_probs=54.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAM   77 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~L   77 (420)
                      .|+.++++.|++.++ ++|..|..|+||||+||..|+.+++++|+++|+++ ..|..|.||||+|+..|+.+++++|
T Consensus        34 ~g~~~~v~~Ll~~g~-~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           34 AGQDDEVRILMANGA-DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            366777777777654 56777777777777777777777777777777777 6677777777777777777777655

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.54  E-value=1.7e-14  Score=135.12  Aligned_cols=116  Identities=14%  Similarity=0.085  Sum_probs=94.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ ++|..|.+|+||||+||..|+.++|++|+++|+++ ..|..|.||||+|+.+|+.+++++|+.+
T Consensus        31 ~g~~~~v~~Ll~~g~-~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  109 (229)
T 2vge_A           31 TGELEVVQQAVKEMN-DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH  109 (229)
T ss_dssp             HTCHHHHHHHHHHSS-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cCCHHHHHHHHhcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            489999999999876 78999999999999999999999999999999999 8999999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHH--HHhhCHHHHHHHhhccccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLA--LVASMPRVFESVQDKSITK  120 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~--li~~~p~~~~~lLD~ci~~  120 (420)
                      +......+.  ..+.+....+  .....+++++.++++....
T Consensus       110 ga~~~~~~~--~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~  149 (229)
T 2vge_A          110 GAAIFATTL--SDGATAFEKCDPYREGYADCATYLADVEQSM  149 (229)
T ss_dssp             TCCTTCCCS--STTCCTGGGCCTTSTTHHHHHHHHHHHHHHT
T ss_pred             CCCcccccC--CCCCCHHHHHHHHhcChHHHHHHHHHcCCCc
Confidence            765443221  1111222223  4456678888888876543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.53  E-value=9.9e-15  Score=136.70  Aligned_cols=114  Identities=9%  Similarity=0.035  Sum_probs=91.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++ ++|..|.+|+||||+||..|+.++|++|+++|+++ ..|..|.||||+|+.+|+.+++++|+.+
T Consensus        47 ~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  125 (239)
T 1ycs_B           47 EGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES  125 (239)
T ss_dssp             HTCHHHHHHHTSTTS-SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            589999999999876 79999999999999999999999999999999999 8999999999999999999999999999


Q ss_pred             CCCccchhcccCCCCcchHH-H--HHhhCHHHHHHHhhcccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTL-A--LVASMPRVFESVQDKSIT  119 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~-~--li~~~p~~~~~lLD~ci~  119 (420)
                      +.......   .....+|.. +  ......++++.+++....
T Consensus       126 ga~~~~~~---~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~  164 (239)
T 1ycs_B          126 GAAVFAMT---YSDMQTAADKCEEMEEGYTQCSQFLYGVQEK  164 (239)
T ss_dssp             TCCTTCCC---SSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH
T ss_pred             CCCcceec---CCCCcchHHHHHHhhhccHHHHHHHHHhhhc
Confidence            86544322   111213332 2  233456777777776543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.53  E-value=1.6e-14  Score=126.16  Aligned_cols=114  Identities=12%  Similarity=0.028  Sum_probs=93.4

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCc-HHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLS-AIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~T-pLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+.++++.|++.++ ++|..|..|+||||+|+ .|+.++|++|+++|+++ ..|..|.| |||+|+..|+.+++++|+.
T Consensus        22 ~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~   99 (156)
T 1bi7_B           22 RGRVEEVRALLEAGA-NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR   99 (156)
T ss_dssp             HTCHHHHHHHHTTTC-CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHH
Confidence            488999999999765 79999999999999986 99999999999999999 89999999 9999999999999999999


Q ss_pred             CCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccccc
Q psy8764          80 HNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK  120 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~  120 (420)
                      ++......   +..+.+....+......++++.++++....
T Consensus       100 ~ga~~~~~---d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~  137 (156)
T 1bi7_B          100 AGARLDVR---DAWGRLPVDLAEELGHRDVARYLRAAAGGT  137 (156)
T ss_dssp             HTCCSSCC---CTTCCCHHHHHHHHTCHHHHHHHSSCC---
T ss_pred             cCCCCccc---CCCCCCHHHHHHHhCHHHHHHHHHHcCCCC
Confidence            87654322   122233455667778899999999866543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.53  E-value=3.6e-14  Score=120.84  Aligned_cols=83  Identities=18%  Similarity=0.083  Sum_probs=70.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..|+.+++++|+.+
T Consensus        20 ~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   98 (137)
T 3c5r_A           20 KGDIPSVEYLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY   98 (137)
T ss_dssp             HTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCC-CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            478888999998765 68888888999999999999999999999999988 8888899999999999999999999887


Q ss_pred             CCCcc
Q psy8764          81 NTRGT   85 (420)
Q Consensus        81 ~~~~~   85 (420)
                      +....
T Consensus        99 ga~~~  103 (137)
T 3c5r_A           99 GASRN  103 (137)
T ss_dssp             TCCTT
T ss_pred             CCCCC
Confidence            65543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.52  E-value=8.4e-14  Score=120.59  Aligned_cols=110  Identities=13%  Similarity=0.091  Sum_probs=91.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+.+|+.++++.|+.+
T Consensus        45 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           45 FGSTAIALELLKQGA-SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence            689999999999876 79999999999999999999999999999999999 8999999999999999999999999987


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDK  116 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~  116 (420)
                       .....   .+..+.+....+.....+++++.++++
T Consensus       124 -~~~~~---~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          124 -SDLHR---RDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             -SCTTC---CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             -cCCCC---cCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence             32221   122223334456666788888888763

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.52  E-value=1.3e-13  Score=123.96  Aligned_cols=114  Identities=18%  Similarity=0.130  Sum_probs=95.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++.++|..|.+|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        15 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~   94 (201)
T 3hra_A           15 QRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH   94 (201)
T ss_dssp             TTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             hccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            689999999999888789999999999999999999999999999999999 8999999999999999999999999955


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKS  117 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~c  117 (420)
                      ....  +...+..+.+..+.+.....+++++.++++.
T Consensus        95 ~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  129 (201)
T 3hra_A           95 ATPD--LNKHNRYGGNALIPAAEKGHIDNVKLLLEDG  129 (201)
T ss_dssp             SCCC--TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC
T ss_pred             cCcc--cccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            4321  1111122233455667778899999999865

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.52  E-value=1.2e-13  Score=126.33  Aligned_cols=117  Identities=15%  Similarity=0.099  Sum_probs=91.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++..++..|..|.||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        68 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  147 (223)
T 2f8y_A           68 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN  147 (223)
T ss_dssp             TTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            578899999998877678888889999999999999999999999999998 7888899999999999999999999888


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKA  121 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~~  121 (420)
                      +......   +..+.+....+.....+++++.++++.....
T Consensus       148 g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  185 (223)
T 2f8y_A          148 GANKDMQ---NNREETPLFLAAREGSYETAKVLLDHFANRD  185 (223)
T ss_dssp             TCCTTCC---CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCc---CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            6543322   1222333455666778888888888765443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.52  E-value=1.8e-14  Score=119.04  Aligned_cols=81  Identities=21%  Similarity=0.188  Sum_probs=60.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..|+.+++++|+.+
T Consensus        19 ~~~~~~~~~Ll~~g~-~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~   97 (115)
T 2l6b_A           19 NGHAEEVKKLLSKGA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK   97 (115)
T ss_dssp             HTCHHHHHHHTTTTC-CSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            366777777777654 57777777777777777777777777777777777 7777777777777777777777777776


Q ss_pred             CCC
Q psy8764          81 NTR   83 (420)
Q Consensus        81 ~~~   83 (420)
                      +..
T Consensus        98 ga~  100 (115)
T 2l6b_A           98 GAD  100 (115)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.52  E-value=2.6e-14  Score=124.80  Aligned_cols=83  Identities=14%  Similarity=0.040  Sum_probs=75.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCCh-HHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNT-ALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~T-pLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+.++++.|++.++ ++|..|..|+| |||+|+..|+.++|++|+++|+++ ..|..|.||||+|+..|+.+++++|+.
T Consensus        54 ~~~~~~v~~Ll~~g~-~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~  132 (156)
T 1bi7_B           54 MGSARVAELLLLHGA-EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  132 (156)
T ss_dssp             TTCHHHHHHHHTTTC-CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cCCHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHH
Confidence            589999999999875 79999999999 999999999999999999999999 899999999999999999999999999


Q ss_pred             CCCCcc
Q psy8764          80 HNTRGT   85 (420)
Q Consensus        80 ~~~~~~   85 (420)
                      ++....
T Consensus       133 ~ga~~~  138 (156)
T 1bi7_B          133 AAGGTR  138 (156)
T ss_dssp             CC----
T ss_pred             cCCCCC
Confidence            876544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.52  E-value=2.4e-14  Score=138.27  Aligned_cols=79  Identities=19%  Similarity=0.196  Sum_probs=54.6

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      |+.+++++|++.++ ++|..|.+|+||||+||..|+.++|++|+++||++ ..|..|.||||+|+..|+.+++++|+.++
T Consensus       183 ~~~~~v~~Ll~~ga-~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          183 TSLHIVDFLVQNSG-NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             TTHHHHHHHHHHCS-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHCCC-CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            56677777776654 56666777777777777777777777777777777 66677777777777777777777776655


Q ss_pred             C
Q psy8764          82 T   82 (420)
Q Consensus        82 ~   82 (420)
                      +
T Consensus       262 a  262 (278)
T 1dcq_A          262 S  262 (278)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.51  E-value=7.8e-14  Score=121.35  Aligned_cols=112  Identities=14%  Similarity=0.080  Sum_probs=94.0

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      |+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..|+.++++.|+.++
T Consensus        48 ~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  126 (162)
T 1ihb_A           48 GNPEIARRLLLRGA-NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT  126 (162)
T ss_dssp             SCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             CcHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcc
Confidence            88999999999875 78999999999999999999999999999999999 89999999999999999999999999987


Q ss_pred             CCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcc
Q psy8764          82 TRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKS  117 (420)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~c  117 (420)
                      ......  .+..+.+....+.....+++++.++++.
T Consensus       127 ~~~~~~--~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A          127 ASNVGH--RNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             CCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCCCC--cCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            653111  1122233344566777899999888754

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.51  E-value=6.4e-14  Score=125.69  Aligned_cols=82  Identities=24%  Similarity=0.240  Sum_probs=75.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-ccc-CCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYN-CMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n-~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+.++++.|++ +. ++|..|.+|+||||+|+..|+.++|++|+++|+++ ..+ ..|.||||+|+..|+.+++++|+.
T Consensus        54 ~g~~~~v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  131 (183)
T 3deo_A           54 KADEQALSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE  131 (183)
T ss_dssp             TTCHHHHHHHTT-TS-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHh-cC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHH
Confidence            689999999999 54 79999999999999999999999999999999999 777 889999999999999999999999


Q ss_pred             CCCCcc
Q psy8764          80 HNTRGT   85 (420)
Q Consensus        80 ~~~~~~   85 (420)
                      ++....
T Consensus       132 ~ga~~~  137 (183)
T 3deo_A          132 LGADIE  137 (183)
T ss_dssp             HTCCTT
T ss_pred             cCCCCc
Confidence            876543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.51  E-value=8e-14  Score=125.30  Aligned_cols=79  Identities=16%  Similarity=0.072  Sum_probs=41.1

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      |+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..|+.++++.|+.++
T Consensus        79 ~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  157 (192)
T 2rfm_A           79 NRLGIAEKLLSKGS-NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG  157 (192)
T ss_dssp             TCHHHHHHHHHHTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            44555555555443 34555555555555555555555555555555555 44555555555555555555555555544


Q ss_pred             C
Q psy8764          82 T   82 (420)
Q Consensus        82 ~   82 (420)
                      .
T Consensus       158 a  158 (192)
T 2rfm_A          158 A  158 (192)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.51  E-value=1.3e-13  Score=127.10  Aligned_cols=118  Identities=12%  Similarity=0.063  Sum_probs=95.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCC-------------CCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDK-------------DGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIY   67 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~-------------~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~   67 (420)
                      +|+.++++.|++.++ +++..+.             +|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+.
T Consensus        85 ~~~~~~v~~Ll~~g~-~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~  163 (232)
T 2rfa_A           85 NQNVNLVRALLARGA-SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL  163 (232)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT
T ss_pred             cCCHHHHHHHHhCCC-CCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            589999999999876 6777655             7999999999999999999999999999 899999999999999


Q ss_pred             cCCHHHH----HHHHhCCCCccchh--cc-cCCCCcchHHHHHhhCHHHHHHHhhccccc
Q psy8764          68 YKFPEAA----LAMVTHNTRGTEIM--SL-RSDKHPCVTLALVASMPRVFESVQDKSITK  120 (420)
Q Consensus        68 ~g~~evv----~~Ll~~~~~~~~~~--~~-~~~~~~~~~~~li~~~p~~~~~lLD~ci~~  120 (420)
                      +|+.+++    ++|+.++.......  .. +..+.+....+......++++.++++....
T Consensus       164 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          164 QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI  223 (232)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             cCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            9999998    99999887543111  11 122233355677788999999999876544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.51  E-value=1.2e-13  Score=133.50  Aligned_cols=114  Identities=13%  Similarity=0.044  Sum_probs=94.2

Q ss_pred             CCCHHHHHHHHhcCCCC-----CCCcCCCCChHHHHHHHc---CCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHH
Q psy8764           2 SGYTNTMVHLNSVHSHL-----LDQVDKDGNTALHLATME---NKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPE   72 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~-----in~~D~~G~TpLHlAa~~---g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~e   72 (420)
                      .|+.+.+..+++.+...     ++..|..|+||||+||..   |+.++|++|+++|+++ ..|..|.||||+|+.+|+.+
T Consensus       140 ~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~  219 (278)
T 1dcq_A          140 TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE  219 (278)
T ss_dssp             TTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHH
Confidence            57889999999887632     555689999999999999   9999999999999999 89999999999999999999


Q ss_pred             HHHHHHhCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          73 AALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        73 vv~~Ll~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      ++++|+.++......+   ..+.+....+......++++.+++...
T Consensus       220 ~v~~Ll~~gad~~~~d---~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          220 CLKLLLRGKASIEIAN---ESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHHHHHHTTCCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCCcc---CCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999887644322   222333555677788999999998654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.50  E-value=7.3e-14  Score=115.62  Aligned_cols=80  Identities=19%  Similarity=0.208  Sum_probs=75.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..|+.++++.|+++
T Consensus        45 ~~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           45 NGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             HTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCC-CCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            478999999999776 78999999999999999999999999999999999 8999999999999999999999999987


Q ss_pred             CC
Q psy8764          81 NT   82 (420)
Q Consensus        81 ~~   82 (420)
                      ++
T Consensus       124 Ga  125 (126)
T 1n0r_A          124 GA  125 (126)
T ss_dssp             TC
T ss_pred             CC
Confidence            65

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.50  E-value=6e-14  Score=134.66  Aligned_cols=114  Identities=16%  Similarity=0.100  Sum_probs=66.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.+++++|++.++ +++..+.+|.||+|.|+..|+.+++++|+++|+++ ..|..|.||||+|+.+|+.+++++|+.+
T Consensus        96 ~g~~~~v~~Ll~~~a-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  174 (269)
T 4b93_B           96 HGRADLIPLLLKHGA-NAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH  174 (269)
T ss_dssp             TTCTTHHHHHHHTTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT
T ss_pred             cCcHHHHHHHHhcCC-CcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence            466666666666554 45666666666666666666666666666666666 5666666666666666666666666666


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      +...+..   +..+.+..+.+.....+++++.++++...
T Consensus       175 gadvn~~---~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad  210 (269)
T 4b93_B          175 GASINAS---NNKGNTALHEAVIEKHVFVVELLLLHGAS  210 (269)
T ss_dssp             TCCTTCB---CTTSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCcc---ccCCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence            5433221   11222334445555566666666665443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.50  E-value=3e-13  Score=123.63  Aligned_cols=128  Identities=9%  Similarity=0.070  Sum_probs=101.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCC-cc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNC-KL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga-~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+++|+ ++ ..+..|.||||+|+..|+.++++.|+.
T Consensus        35 ~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  113 (223)
T 2f8y_A           35 YSRSDAAKRLLEASA-DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN  113 (223)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHH
Confidence            689999999999875 789999999999999999999999999999998 66 889999999999999999999999999


Q ss_pred             CCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccccccc-CCCCcceeee
Q psy8764          80 HNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKANC-KKDSKSFYIK  133 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~~~~-~~~~~~~~i~  133 (420)
                      ++......   +..+.+..+.+......++++.++++....... ..+.+..++.
T Consensus       114 ~g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  165 (223)
T 2f8y_A          114 SHADVNAV---DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA  165 (223)
T ss_dssp             TTCCTTCB---CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cCCCCcCc---CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHH
Confidence            87653322   222233355566778899999999886544332 2233444444

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.50  E-value=6.6e-14  Score=131.45  Aligned_cols=120  Identities=13%  Similarity=0.071  Sum_probs=97.3

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcC--------------CCCChHHHHHHHcCCHHHHHHHHH---CCCcc-cccCCCCcHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVD--------------KDGNTALHLATMENKPKAICLLLS---LNCKL-LYNCMDLSAID   63 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D--------------~~G~TpLHlAa~~g~~~vV~lLL~---~Ga~i-~~n~~g~TpLh   63 (420)
                      .|+.++++.|++.++ ++|..|              ..|+||||+||..|+.++|++|++   +|+++ ..|..|.||||
T Consensus       103 ~g~~~~v~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh  181 (260)
T 3jxi_A          103 RRCKHYVELLVEKGA-DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLH  181 (260)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHH
T ss_pred             cCCHHHHHHHHhCCC-CcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHH
Confidence            689999999999876 788888              689999999999999999999999   99999 99999999999


Q ss_pred             HHHHcCC---------HHHHHHHHhCCCCccch----hcccCCCCcchHHHHHhhCHHHHHHHhhccccccc
Q psy8764          64 YAIYYKF---------PEAALAMVTHNTRGTEI----MSLRSDKHPCVTLALVASMPRVFESVQDKSITKAN  122 (420)
Q Consensus        64 ~A~~~g~---------~evv~~Ll~~~~~~~~~----~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~~~  122 (420)
                      +|+..|+         .++++.|+.++......    ...+..+.+....+......++++.++++......
T Consensus       182 ~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          182 ALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence            9999888         79999999876432110    11122223335567778899999999998876544

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.49  E-value=2.9e-13  Score=124.67  Aligned_cols=117  Identities=13%  Similarity=0.089  Sum_probs=95.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc------cccCCCCcHHHHHHHcCCHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL------LYNCMDLSAIDYAIYYKFPEAAL   75 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i------~~n~~g~TpLh~A~~~g~~evv~   75 (420)
                      .|+.++++.|++.++.++|..|.+|+||||+|+..|+.++|++|+++|+++      ..|..|.||||+|+.+|+.++++
T Consensus        13 ~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~   92 (232)
T 2rfa_A           13 ENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR   92 (232)
T ss_dssp             TTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHH
Confidence            689999999999855689999999999999999999999999999999986      23568999999999999999999


Q ss_pred             HHHhCCCCccchhcc----------cCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          76 AMVTHNTRGTEIMSL----------RSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        76 ~Ll~~~~~~~~~~~~----------~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      .|+.++.........          +..+.+..+.+.....+++++.++++..
T Consensus        93 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  145 (232)
T 2rfa_A           93 ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA  145 (232)
T ss_dssp             HHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            999987654432210          0012333556777788999999998654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.49  E-value=3.1e-13  Score=129.04  Aligned_cols=83  Identities=17%  Similarity=0.204  Sum_probs=77.6

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++ ++|..|.+|.||||+||..|+.++|++|+++|+++ ..|..|.||||+|+..|+.+++++|+.+
T Consensus        50 ~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  128 (299)
T 1s70_B           50 SGDTEEVLRLLERGA-DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ  128 (299)
T ss_dssp             HTCHHHHHHHHHHCC-CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence            489999999999876 79999999999999999999999999999999999 8899999999999999999999999998


Q ss_pred             CCCcc
Q psy8764          81 NTRGT   85 (420)
Q Consensus        81 ~~~~~   85 (420)
                      +....
T Consensus       129 g~~~~  133 (299)
T 1s70_B          129 GAHVG  133 (299)
T ss_dssp             TCCTT
T ss_pred             CCCCC
Confidence            76433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.49  E-value=4.4e-14  Score=130.10  Aligned_cols=83  Identities=18%  Similarity=0.214  Sum_probs=77.4

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHC-CCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSL-NCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~-Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+.++++.|++.++ ++|..|..|+||||+||..|+.++|++|+++ |+++ ..|..|.||||+|+..|+.+++++|+.
T Consensus        83 ~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  161 (222)
T 3ehr_A           83 RGNLSWLRECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA  161 (222)
T ss_dssp             HTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCcHHHHHHHHhCCC-CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            489999999999775 7999999999999999999999999999999 9999 899999999999999999999999999


Q ss_pred             CCCCcc
Q psy8764          80 HNTRGT   85 (420)
Q Consensus        80 ~~~~~~   85 (420)
                      ++....
T Consensus       162 ~ga~~~  167 (222)
T 3ehr_A          162 KGARTD  167 (222)
T ss_dssp             HTCCSC
T ss_pred             cCCCCc
Confidence            876544

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.49  E-value=2e-13  Score=128.29  Aligned_cols=114  Identities=10%  Similarity=0.035  Sum_probs=71.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCC-cc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNC-KL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga-~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+++|+ ++ ..+..|.||||+|+..|+.++++.|+.
T Consensus        67 ~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  145 (253)
T 1yyh_A           67 YSRSDAAKRLLEASA-DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN  145 (253)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH
T ss_pred             cCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH
Confidence            466777777777654 566777777777777777777777777777766 55 666677777777777777777777776


Q ss_pred             CCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          80 HNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      ++......   +..+.+..+.+......++++.++++...
T Consensus       146 ~g~~~~~~---d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  182 (253)
T 1yyh_A          146 SHADVNAV---DDLGKSALHWAAAVNNVDAAVVLLKNGAN  182 (253)
T ss_dssp             TTCCTTCB---CTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             cCCCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            65433221   11112223344555566666666665443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.48  E-value=1.4e-13  Score=129.71  Aligned_cols=82  Identities=17%  Similarity=0.150  Sum_probs=75.7

Q ss_pred             CCCHHHHHHHHhcCCC--CCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSH--LLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMV   78 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~--~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll   78 (420)
                      .|+.++++.|++.++.  .+|..|..|+||||+||..|+.++|++|+++|+++ ..|..|.||||+|+..|+.++++.|+
T Consensus        19 ~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll   98 (282)
T 1oy3_D           19 HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL   98 (282)
T ss_dssp             TTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHS
T ss_pred             cCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhh
Confidence            6899999999987653  27899999999999999999999999999999999 89999999999999999999999999


Q ss_pred             hCCCC
Q psy8764          79 THNTR   83 (420)
Q Consensus        79 ~~~~~   83 (420)
                      .++..
T Consensus        99 ~~~~~  103 (282)
T 1oy3_D           99 QPRPS  103 (282)
T ss_dssp             SSCCS
T ss_pred             ccCCC
Confidence            87643

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.48  E-value=1.4e-13  Score=129.60  Aligned_cols=83  Identities=24%  Similarity=0.231  Sum_probs=76.5

Q ss_pred             CCCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-ccc-CCCCcHHHHHHHcCCHHHHHHHH
Q psy8764           1 MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYN-CMDLSAIDYAIYYKFPEAALAMV   78 (420)
Q Consensus         1 m~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n-~~g~TpLh~A~~~g~~evv~~Ll   78 (420)
                      ..|+.++++.|++ +. ++|..|..|+||||+||..|+.++|++|+++|+++ ..+ ..|.||||+|+.+|+.+++++|+
T Consensus        54 ~~g~~~~v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  131 (244)
T 3ui2_A           54 RKADEQALSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV  131 (244)
T ss_dssp             TTTCHHHHHHTTT-TC-CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHc-CC-CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3689999999999 54 79999999999999999999999999999999999 777 88999999999999999999999


Q ss_pred             hCCCCcc
Q psy8764          79 THNTRGT   85 (420)
Q Consensus        79 ~~~~~~~   85 (420)
                      .++....
T Consensus       132 ~~ga~~~  138 (244)
T 3ui2_A          132 ELGADIE  138 (244)
T ss_dssp             HTTCCTT
T ss_pred             HCCCCCC
Confidence            9976544

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.48  E-value=7.9e-14  Score=130.81  Aligned_cols=118  Identities=12%  Similarity=0.079  Sum_probs=96.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCC-------------CChHHHHHHHcCCHHHHHHHHH---CCCcc-cccCCCCcHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKD-------------GNTALHLATMENKPKAICLLLS---LNCKL-LYNCMDLSAIDY   64 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~-------------G~TpLHlAa~~g~~~vV~lLL~---~Ga~i-~~n~~g~TpLh~   64 (420)
                      .|+.++++.|++.++ ++|..|..             |+||||+|+..|+.++|++|++   +|+++ ..|..|.||||+
T Consensus       100 ~g~~~~v~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~  178 (256)
T 2etb_A          100 KRSLQCVKLLVENGA-DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHA  178 (256)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred             cCCHHHHHHHHHcCC-CCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHH
Confidence            689999999999876 78888876             9999999999999999999999   99999 999999999999


Q ss_pred             HHH--cCCHH-------HHHHHHhCCCCccch----hcccCCCCcchHHHHHhhCHHHHHHHhhccccc
Q psy8764          65 AIY--YKFPE-------AALAMVTHNTRGTEI----MSLRSDKHPCVTLALVASMPRVFESVQDKSITK  120 (420)
Q Consensus        65 A~~--~g~~e-------vv~~Ll~~~~~~~~~----~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~  120 (420)
                      |+.  +|+.+       ++++|+.++......    ...+..+.+....+......++++.++++....
T Consensus       179 A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          179 LVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            999  89998       999999886543100    111222234455677788999999999876544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.48  E-value=4.5e-13  Score=123.54  Aligned_cols=114  Identities=17%  Similarity=0.201  Sum_probs=71.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCC-Ccc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLN-CKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~G-a~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      +|+.++++.|++.+. .++..|..|.||||+|+..|+.+++++|+++| +++ ..+..|.||||.|+..|+.++++.|+.
T Consensus        54 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  132 (237)
T 3b7b_A           54 NNHLEAVKYLIKAGA-LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS  132 (237)
T ss_dssp             TTCHHHHHHHHTTTC-CCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHhCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            466777777776554 56667777777777777777777777777776 566 666677777777777777777777777


Q ss_pred             CCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          80 HNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      ++......   +..+.+..+.+......++++.+++....
T Consensus       133 ~g~~~~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  169 (237)
T 3b7b_A          133 KGSDINIR---DNEENICLHWAAFSGCVDIAEILLAAKCD  169 (237)
T ss_dssp             TTCCTTCC---CTTSCCHHHHHHHHCCHHHHHHHHTTTCC
T ss_pred             CCCCCCcc---CCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            65432211   11112223344555566666666665543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.47  E-value=1.2e-13  Score=131.02  Aligned_cols=117  Identities=10%  Similarity=0.039  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCC--------------CCChHHHHHHHcCCHHHHHHHHH---CCCcc-cccCCCCcHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDK--------------DGNTALHLATMENKPKAICLLLS---LNCKL-LYNCMDLSAID   63 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~--------------~G~TpLHlAa~~g~~~vV~lLL~---~Ga~i-~~n~~g~TpLh   63 (420)
                      .|+.+++++|++.++ +++..|.              .|+||||+|+..|+.++|++|++   +|+++ ..|..|.||||
T Consensus       111 ~g~~~~v~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh  189 (273)
T 2pnn_A          111 RRNMTLVTLLVENGA-DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH  189 (273)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHH
T ss_pred             cCCHHHHHHHHHCCC-CcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHH
Confidence            589999999999876 7888887              79999999999999999999999   99999 99999999999


Q ss_pred             HHHHcCC---------HHHHHHHHhCCCCccch----hcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          64 YAIYYKF---------PEAALAMVTHNTRGTEI----MSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        64 ~A~~~g~---------~evv~~Ll~~~~~~~~~----~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      +|+..|+         .++++.|+.++......    ...+..+.+....+......++++.++++...
T Consensus       190 ~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          190 ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence            9999998         89999999876543210    01122223335567778899999999987763

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.47  E-value=3.2e-13  Score=121.38  Aligned_cols=115  Identities=7%  Similarity=-0.034  Sum_probs=89.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHH-HCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLL-SLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL-~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      +|+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+ ..|+++ ..|..|.||||.|+..|+.++++.|+.
T Consensus        49 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  127 (201)
T 3hra_A           49 NNDIEIAKALIDRGA-DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE  127 (201)
T ss_dssp             HTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            488999999999776 78999999999999999999999999999 567788 889999999999999999999999998


Q ss_pred             CC-CCccchhcccCCCCcchHH-HHHhhC-----HHHHHHHhhcccccc
Q psy8764          80 HN-TRGTEIMSLRSDKHPCVTL-ALVASM-----PRVFESVQDKSITKA  121 (420)
Q Consensus        80 ~~-~~~~~~~~~~~~~~~~~~~-~li~~~-----p~~~~~lLD~ci~~~  121 (420)
                      ++ ......   +.. +.+|.. +.....     +++++.++++.....
T Consensus       128 ~g~~~~~~~---~~~-g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~  172 (201)
T 3hra_A          128 DGREDIDFQ---NDF-GYTALIEAVGLREGNQLYQDIVKLLMENGADQS  172 (201)
T ss_dssp             HCCCCTTCC---CTT-SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred             cCCCCcCCC---CCC-CCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence            87 322211   111 333443 333333     788889998876544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.47  E-value=5.2e-13  Score=122.17  Aligned_cols=79  Identities=18%  Similarity=0.142  Sum_probs=39.3

Q ss_pred             CCHHHHHHHHhcCC-CCCCC-cCCCCChHHHHHHHcCCHHHHHHHHHCC--Ccc-cccCCCCcHHHHHHHcCCHHHHHHH
Q psy8764           3 GYTNTMVHLNSVHS-HLLDQ-VDKDGNTALHLATMENKPKAICLLLSLN--CKL-LYNCMDLSAIDYAIYYKFPEAALAM   77 (420)
Q Consensus         3 G~~e~ve~LL~~~~-~~in~-~D~~G~TpLHlAa~~g~~~vV~lLL~~G--a~i-~~n~~g~TpLh~A~~~g~~evv~~L   77 (420)
                      |+.++++.|++.++ .+++. .|..|+||||+|+..|+.+++++|+++|  +++ ..+..|.||||.|+..|+.++++.|
T Consensus        47 ~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  126 (228)
T 2dzn_A           47 QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL  126 (228)
T ss_dssp             TCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHH
Confidence            45555555555441 12222 4455555555555555555555555554  444 4445555555555555555555555


Q ss_pred             HhCC
Q psy8764          78 VTHN   81 (420)
Q Consensus        78 l~~~   81 (420)
                      +.++
T Consensus       127 l~~g  130 (228)
T 2dzn_A          127 IENG  130 (228)
T ss_dssp             HHTT
T ss_pred             HHcC
Confidence            5543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.47  E-value=3.9e-13  Score=129.21  Aligned_cols=112  Identities=13%  Similarity=0.024  Sum_probs=94.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.+. ++|..|.+|+||||+||..|+.++|++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        69 ~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  147 (285)
T 3d9h_A           69 HGHQLSLRNLISQGW-AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH  147 (285)
T ss_dssp             TTCHHHHHHHHHTTC-CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC
Confidence            589999999999775 78999999999999999999999999999999999 8899999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      +.....    ..+..+..+.+......++++.+++...
T Consensus       148 g~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  181 (285)
T 3d9h_A          148 GASVQP----ESDLASPIHEAARRGHVECVNSLIAYGG  181 (285)
T ss_dssp             TCCSSC----SCTTSCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            765332    1122333555677778899999887543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.47  E-value=5.6e-13  Score=122.45  Aligned_cols=115  Identities=16%  Similarity=0.146  Sum_probs=83.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++..++..|.+|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        16 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   95 (231)
T 3aji_A           16 SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK   95 (231)
T ss_dssp             HTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHc
Confidence            477888888887776667777888888888888888888888888888888 7788888888888888888888888877


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      +......   +..+.+..+.+.....+++++.++++...
T Consensus        96 g~~~~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  131 (231)
T 3aji_A           96 GAHVNAV---NQNGCTPLHYAASKNRHEIAVMLLEGGAN  131 (231)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            6543321   11112334445566677777777776544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.47  E-value=3.8e-13  Score=130.28  Aligned_cols=115  Identities=17%  Similarity=0.120  Sum_probs=96.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.+.++.|+...+.+++..|..|+||||+||..|+.++|++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus        34 ~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  113 (351)
T 3utm_A           34 SGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH  113 (351)
T ss_dssp             HTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHC
Confidence            589999999998767789999999999999999999999999999999999 8999999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      +......   +..+.+..+.++.....++++.++++...
T Consensus       114 g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  149 (351)
T 3utm_A          114 GACVNAM---DLWQFTPLHEAASKNRVEVCSLLLSHGAD  149 (351)
T ss_dssp             TCCTTCC---CTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            7654322   12223334556777789999999986543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.47  E-value=2e-13  Score=128.33  Aligned_cols=117  Identities=15%  Similarity=0.099  Sum_probs=97.6

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++.+++..|.+|.||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..|+.+++++|+.+
T Consensus       100 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  179 (253)
T 1yyh_A          100 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN  179 (253)
T ss_dssp             HTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            488999999999887788999999999999999999999999999999999 8899999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKA  121 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~~  121 (420)
                      +......   +..+.+....+......++++.++++.....
T Consensus       180 ga~~~~~---~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  217 (253)
T 1yyh_A          180 GANKDMQ---NNREETPLFLAAREGSYETAKVLLDHFANRD  217 (253)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCc---CCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc
Confidence            7654432   2222333555677788999999999876544

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.47  E-value=2e-13  Score=130.98  Aligned_cols=110  Identities=16%  Similarity=0.144  Sum_probs=70.4

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh-C
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT-H   80 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~-~   80 (420)
                      |+.++++.|++.+. ..+..|..|+||||+||..|+.++|++|+++|+++ ..|..|.||||+|+..|+.+++++|+. +
T Consensus       161 ~~~~~v~~Ll~~g~-~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  239 (276)
T 4hbd_A          161 DDIETVLQLFRLGN-INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVP  239 (276)
T ss_dssp             HHHHHHHHHHHHSC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTST
T ss_pred             hhHHHHHHHHHcCC-CccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC
Confidence            34455555555442 44555666777777777888888888888888877 777778888888888888888887777 4


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDK  116 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~  116 (420)
                      +......   +..+.+....+.....+++++.++++
T Consensus       240 gad~~~~---d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          240 SCDISLT---DRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             TCCTTCC---CTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCCcCc---CCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            4432221   11212334445566677777777764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.47  E-value=2.6e-13  Score=127.78  Aligned_cols=100  Identities=15%  Similarity=0.164  Sum_probs=81.7

Q ss_pred             CCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccC-CCCcHHHHHHHcCCHHHHHHHHhCCCCccchhcccCCCCc
Q psy8764          19 LDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNC-MDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHP   96 (420)
Q Consensus        19 in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~-~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~~~~~~~   96 (420)
                      ++..|..|+||||+|+..|+.++|++|+++|+++ ..+. .|.||||+|+.+|+.+++++|+.++......   +..+.+
T Consensus       151 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~---d~~g~t  227 (282)
T 1oy3_D          151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR---MYGGRT  227 (282)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC---CTTSCC
T ss_pred             CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccc---ccCCCC
Confidence            6788999999999999999999999999999999 6664 5999999999999999999999997654432   122233


Q ss_pred             chHHHHHhhCHHHHHHHhhcccccc
Q psy8764          97 CVTLALVASMPRVFESVQDKSITKA  121 (420)
Q Consensus        97 ~~~~~li~~~p~~~~~lLD~ci~~~  121 (420)
                      ..+.+.....+++++.++++.....
T Consensus       228 pL~~A~~~~~~~~v~~Ll~~ga~~~  252 (282)
T 1oy3_D          228 PLGSALLRPNPILARLLRAHGAPEP  252 (282)
T ss_dssp             HHHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHcCCcHHHHHHHHcCCCcC
Confidence            3455666778999999998876544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.47  E-value=2.7e-13  Score=108.16  Aligned_cols=90  Identities=16%  Similarity=0.140  Sum_probs=73.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccchhcccCCCCcchHHHHH
Q psy8764          25 DGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALV  103 (420)
Q Consensus        25 ~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~~~~~~~~~~~~li  103 (420)
                      +|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+.+|+.+++++|+.++......+   ..+.+....+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d---~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD---KNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---TTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC---CCCCCHHHHHHH
Confidence            5899999999999999999999999999 899999999999999999999999999876543322   222333445666


Q ss_pred             hhCHHHHHHHhhcc
Q psy8764         104 ASMPRVFESVQDKS  117 (420)
Q Consensus       104 ~~~p~~~~~lLD~c  117 (420)
                      ....++++.++++.
T Consensus        78 ~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           78 NGHLEVVKLLLEAG   91 (93)
T ss_dssp             TTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHcC
Confidence            77888888888743

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.46  E-value=3.6e-13  Score=129.18  Aligned_cols=111  Identities=12%  Similarity=0.135  Sum_probs=81.2

Q ss_pred             HHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCc
Q psy8764           6 NTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRG   84 (420)
Q Consensus         6 e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~   84 (420)
                      .+++.|++.++ ++|.+|.+|+||||+||..|+.++|++|+++|+++ ..+..|.||+|.|+..++.++++.|+.++...
T Consensus        67 ~~v~~Ll~~Ga-dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  145 (269)
T 4b93_B           67 KRLAKVPASGL-GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP  145 (269)
T ss_dssp             --------CCC-CTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHCCC-CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC
Confidence            46778888665 78899999999999999999999999999999999 88888999999999999999999999887654


Q ss_pred             cchhcccCCCCcchHHHHHhhCHHHHHHHhhccccc
Q psy8764          85 TEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK  120 (420)
Q Consensus        85 ~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~  120 (420)
                      +..+   ..+.+..+.+......++++.++++....
T Consensus       146 n~~d---~~g~TpL~~A~~~g~~~~v~~Ll~~gadv  178 (269)
T 4b93_B          146 NKKD---LSGNTPLIYACSGGHHELVALLLQHGASI  178 (269)
T ss_dssp             CCCC---TTCCCHHHHHHHTTCGGGHHHHHHTTCCT
T ss_pred             CCCC---CCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Confidence            3321   12223344566677888888888876544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.46  E-value=7.9e-13  Score=121.43  Aligned_cols=128  Identities=13%  Similarity=0.098  Sum_probs=99.6

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.+. +++..|..|+||||+|+..|+.+++++|+++|+++ ..|..|.||||.|+..|+.++++.|+.+
T Consensus        50 ~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  128 (231)
T 3aji_A           50 AGHTEIVEFLLQLGV-PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG  128 (231)
T ss_dssp             HTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHhCC-CCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            588999999999875 78999999999999999999999999999999999 8899999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccccccc-CCCCcceeee
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKANC-KKDSKSFYIK  133 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~~~~-~~~~~~~~i~  133 (420)
                      +.......   ..+.+..+.+......++++.+++........ ..+.+..++.
T Consensus       129 g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  179 (231)
T 3aji_A          129 GANPDAKD---HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA  179 (231)
T ss_dssp             TCCTTCCC---TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CCCCCCcC---CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHH
Confidence            76543221   12233344566677888999999876544322 2233444443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.45  E-value=3.6e-13  Score=124.72  Aligned_cols=114  Identities=15%  Similarity=0.084  Sum_probs=74.6

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCc------c-cccCCCCcHHHHHHHcCCHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCK------L-LYNCMDLSAIDYAIYYKFPEAA   74 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~------i-~~n~~g~TpLh~A~~~g~~evv   74 (420)
                      .|+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+++|++      + ..+..|.||||+|+.+|+.+++
T Consensus        55 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  133 (236)
T 1ikn_D           55 TNQPEIAEALLGAGC-DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV  133 (236)
T ss_dssp             TTCHHHHHCCCSCCC-CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHH
Confidence            467777777777654 5777777777777777777777777777777764      2 4566677777777777777777


Q ss_pred             HHHHhCCCCccchhcccC-CCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          75 LAMVTHNTRGTEIMSLRS-DKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        75 ~~Ll~~~~~~~~~~~~~~-~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      ++|+.++.......   . .+.+..+.+.....+++++.++++...
T Consensus       134 ~~Ll~~g~~~~~~~---~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  176 (236)
T 1ikn_D          134 ELLVSLGADVNAQE---PCNGRTALHLAVDLQNPDLVSLLLKCGAD  176 (236)
T ss_dssp             HHHHHHTCCTTCCC---TTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             HHHHHcCCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            77777665433221   1 112223445555667777777776543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.45  E-value=2.7e-13  Score=133.89  Aligned_cols=114  Identities=18%  Similarity=0.155  Sum_probs=96.9

Q ss_pred             CC--CHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCc-----c-cccCCCCcHHHHHHHcCCHHH
Q psy8764           2 SG--YTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCK-----L-LYNCMDLSAIDYAIYYKFPEA   73 (420)
Q Consensus         2 ~G--~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~-----i-~~n~~g~TpLh~A~~~g~~ev   73 (420)
                      .|  +.++++.|++.++ ++|..|..|+||||+|+..|+.++|++|+++|++     + ..|..|.||||+|+.+|+.++
T Consensus       148 ~g~~~~~~v~~Ll~~ga-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  226 (364)
T 3ljn_A          148 LGPEYLEMIKILVQLGA-SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV  226 (364)
T ss_dssp             SCGGGHHHHHHHHHHTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHH
T ss_pred             cCCchHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHH
Confidence            46  8999999999875 7999999999999999999999999999999999     8 889999999999999999999


Q ss_pred             HHHHHhCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          74 ALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        74 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      +++|+.++......   +..+.+..+.+......++++.++++...
T Consensus       227 v~~Ll~~gad~~~~---d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  269 (364)
T 3ljn_A          227 AMRFVEMGIDVNME---DNEHTVPLYLSVRAAMVLLTKELLQKTDV  269 (364)
T ss_dssp             HHHHHTTTCCTTCC---CTTSCCHHHHHHHTCCHHHHHHHHHHSCH
T ss_pred             HHHHHHcCCCCCCC---CCCCCCHHHHHHHhChHHHHHHHHHcCCc
Confidence            99999988654432   22223345567777899999999986543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.45  E-value=2.1e-13  Score=131.31  Aligned_cols=112  Identities=13%  Similarity=0.064  Sum_probs=64.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ ++|..  +|+||||+||..|+.++|++|+++|+++ ..|..|.||||+|+..|+.+++++|+.+
T Consensus        41 ~g~~~~v~~Ll~~g~-~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  117 (285)
T 3kea_A           41 DNNVRLVCTLLNAGA-LKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK  117 (285)
T ss_dssp             TTCHHHHHHHHHTTG-GGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCC-CCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence            466666666666544 44544  3666666666666666666666666666 6666666666666666666666666666


Q ss_pred             CCCccchhcccCCC-CcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          81 NTRGTEIMSLRSDK-HPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        81 ~~~~~~~~~~~~~~-~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      +.....   .+..+ .+..+.+.....+++++.++++...
T Consensus       118 ga~~~~---~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~  154 (285)
T 3kea_A          118 NWRLMF---YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS  154 (285)
T ss_dssp             CGGGGG---CSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT
T ss_pred             CCCCCc---cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Confidence            433221   11111 1223334445556666666665443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.44  E-value=1.4e-12  Score=122.36  Aligned_cols=115  Identities=12%  Similarity=0.022  Sum_probs=90.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCc-CCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQV-DKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~-D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+.++++.|++.++ +++.. |..|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+..|+.++++.|+.
T Consensus        15 ~g~~~~v~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   93 (285)
T 1wdy_A           15 NEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS   93 (285)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            588999999999776 56665 788999999999999999999999999999 888899999999999999999999998


Q ss_pred             CCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccccc
Q psy8764          80 HNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK  120 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~  120 (420)
                      ++......   +..+.+..+.+......++++.+++++...
T Consensus        94 ~g~~~~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  131 (285)
T 1wdy_A           94 KGADVNEC---DFYGFTAFMEAAVYGKVKALKFLYKRGANV  131 (285)
T ss_dssp             TTCCTTCB---CTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cCCCCCcc---CcccCCHHHHHHHhCCHHHHHHHHHhCCCc
Confidence            87543322   122233344566667788888888876544

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.44  E-value=3e-13  Score=126.78  Aligned_cols=113  Identities=14%  Similarity=0.152  Sum_probs=87.3

Q ss_pred             CCHHHHHHHHhcCCCCCC-----------CcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCC-------------
Q psy8764           3 GYTNTMVHLNSVHSHLLD-----------QVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCM-------------   57 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in-----------~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~-------------   57 (420)
                      |+.++++.|++.++ ..+           ..|..|+||||+|+..|+.++|++|+++|+++ ..+..             
T Consensus        57 g~~~~v~~Ll~~g~-~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  135 (256)
T 2etb_A           57 GVNACIMPLLQIDK-DSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYF  135 (256)
T ss_dssp             TBCTTHHHHHHHHH-HTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCS
T ss_pred             chHHHHHHHHhcCC-cccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccC
Confidence            89999999998765 233           24578999999999999999999999999999 77765             


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHh---CCCCccchhcccCCCCcchHH-HHH--hhCHH-------HHHHHhhccccc
Q psy8764          58 DLSAIDYAIYYKFPEAALAMVT---HNTRGTEIMSLRSDKHPCVTL-ALV--ASMPR-------VFESVQDKSITK  120 (420)
Q Consensus        58 g~TpLh~A~~~g~~evv~~Ll~---~~~~~~~~~~~~~~~~~~~~~-~li--~~~p~-------~~~~lLD~ci~~  120 (420)
                      |.||||+|+..|+.+++++|+.   ++...+..   +.. +.+|.. ++.  ...++       +++.+++++...
T Consensus       136 g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~---d~~-g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          136 GELPLSLAACTKQWDVVTYLLENPHQPASLEAT---DSL-GNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             CSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC---CTT-SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccCCCcCcc---CCC-CCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            9999999999999999999999   66543322   222 334443 443  45566       888888866543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.43  E-value=1.6e-12  Score=119.92  Aligned_cols=114  Identities=12%  Similarity=0.060  Sum_probs=92.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.+. +++..|.+|+||||+|+..|+.++|++|+++|+++ ..+..|.||||.|+..|+.++++.|+.+
T Consensus        21 ~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~   99 (237)
T 3b7b_A           21 AGHVDICHMLVQAGA-NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN   99 (237)
T ss_dssp             HTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cCcHHHHHHHHHcCC-CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence            489999999999776 78999999999999999999999999999999999 8899999999999999999999999988


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      +....  ...+..+.+..+.+.....+++++.++++..
T Consensus       100 ~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  135 (237)
T 3b7b_A          100 GQMDV--NCQDDGGWTPMIWATEYKHVDLVKLLLSKGS  135 (237)
T ss_dssp             TCCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCc--ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            73211  1111111233445566678888898887544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.43  E-value=2.3e-13  Score=127.73  Aligned_cols=115  Identities=15%  Similarity=0.142  Sum_probs=87.3

Q ss_pred             CCCHHHHHHHHhcCC----------CCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-ccc--------------C
Q psy8764           2 SGYTNTMVHLNSVHS----------HLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYN--------------C   56 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~----------~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n--------------~   56 (420)
                      +|+.++++.|++.++          ...+..|..|+||||+||..|+.++|++|+++|+++ ..+              .
T Consensus        59 ~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  138 (260)
T 3jxi_A           59 AGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFY  138 (260)
T ss_dssp             TTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCC
T ss_pred             cCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCccccccccc
Confidence            489999999998653          235566779999999999999999999999999999 777              5


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHh---CCCCccchhcccCCCCcchH-HHHHhh---------CHHHHHHHhhccccc
Q psy8764          57 MDLSAIDYAIYYKFPEAALAMVT---HNTRGTEIMSLRSDKHPCVT-LALVAS---------MPRVFESVQDKSITK  120 (420)
Q Consensus        57 ~g~TpLh~A~~~g~~evv~~Ll~---~~~~~~~~~~~~~~~~~~~~-~~li~~---------~p~~~~~lLD~ci~~  120 (420)
                      .|.||||+|+..|+.+++++|+.   ++...+..   +.. +.+|. .+....         ..++++.+++++...
T Consensus       139 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~---d~~-g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          139 FGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ---DSR-GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             SCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC---CTT-SCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccCCCCccc---CCC-CCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence            89999999999999999999999   55543322   122 33333 333212         247778888876543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.43  E-value=1.2e-12  Score=124.90  Aligned_cols=113  Identities=13%  Similarity=0.039  Sum_probs=82.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCC-----------------------
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCM-----------------------   57 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~-----------------------   57 (420)
                      +|+.++++.|++.++ ++|..|..|+||||+|+..|+.++|++|+++|+++ ..|..                       
T Consensus        83 ~g~~~~v~~Ll~~ga-~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~  161 (299)
T 1s70_B           83 DDNVDMVKFLVENGA-NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR  161 (299)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhh
Confidence            689999999999775 79999999999999999999999999999999988 55544                       


Q ss_pred             -------------------------------------CCcHHHHHHHcCCHHHHHHHHhCCCCccchhcccCCCCcchHH
Q psy8764          58 -------------------------------------DLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTL  100 (420)
Q Consensus        58 -------------------------------------g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~~~~~~~~~~~  100 (420)
                                                           |.||||+|+.+|+.++++.|+.++......   +..+.+..+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~---d~~g~tpL~~  238 (299)
T 1s70_B          162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK---DYDGWTPLHA  238 (299)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC---CTTCCCHHHH
T ss_pred             cCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCc---CCCCCcHHHH
Confidence                                                 556666677777777777777665433221   1111233344


Q ss_pred             HHHhhCHHHHHHHhhccc
Q psy8764         101 ALVASMPRVFESVQDKSI  118 (420)
Q Consensus       101 ~li~~~p~~~~~lLD~ci  118 (420)
                      +.....+++++.++++..
T Consensus       239 A~~~~~~~~v~~Ll~~ga  256 (299)
T 1s70_B          239 AAHWGKEEACRILVENLC  256 (299)
T ss_dssp             HHHTTCHHHHHHHHHTTC
T ss_pred             HHhcCCHHHHHHHHHcCC
Confidence            555566677777776543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.43  E-value=6e-13  Score=129.98  Aligned_cols=106  Identities=13%  Similarity=0.028  Sum_probs=86.9

Q ss_pred             HHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHC-CCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy8764           5 TNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSL-NCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNT   82 (420)
Q Consensus         5 ~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~-Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~   82 (420)
                      .+++++|++.++ ++|.+|.+|+||||+||..|+.++|+.|++. |+++ ..|..|+||||+|+.+|+.++|++|+.++.
T Consensus       219 ~~i~~lLl~~ga-d~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  297 (337)
T 4g8k_A          219 EAITHLLLDHGA-DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA  297 (337)
T ss_dssp             HHHHHHHHHTTC-CTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             HHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            457788888765 7899999999999999999999999999975 8999 889999999999999999999999999886


Q ss_pred             CccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          83 RGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      ..+.        ....+.+...+.+++++.++++...
T Consensus       298 d~n~--------~~~L~~A~~~~~~~iv~~Ll~~GA~  326 (337)
T 4g8k_A          298 STDC--------GDLVMTARRNYDHSLVKVLLSHGAK  326 (337)
T ss_dssp             SSTT--------CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCC--------CCHHHHHHHcCCHHHHHHHHHCcCC
Confidence            5432        1124456667788999999986653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.43  E-value=2.4e-13  Score=130.42  Aligned_cols=80  Identities=23%  Similarity=0.235  Sum_probs=75.6

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHH-CCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLS-LNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~-~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+.++++.|++.++ ++|..|.+|+||||+|+..|+.++|++|++ .|+++ ..|..|.||||+|+.+|+.+++++|+.
T Consensus       193 ~g~~~~v~~Ll~~ga-d~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  271 (276)
T 4hbd_A          193 HGRVDVVKALLACEA-DVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS  271 (276)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCC-CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            689999999999876 799999999999999999999999999999 89999 899999999999999999999999997


Q ss_pred             CCC
Q psy8764          80 HNT   82 (420)
Q Consensus        80 ~~~   82 (420)
                      +.+
T Consensus       272 ~~~  274 (276)
T 4hbd_A          272 RMN  274 (276)
T ss_dssp             HCC
T ss_pred             ccC
Confidence            653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.43  E-value=1.3e-12  Score=127.49  Aligned_cols=114  Identities=15%  Similarity=0.079  Sum_probs=88.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCC-CCChHHHHHHHcCCHHHHHHHHHCCCcc-c--------------------------
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDK-DGNTALHLATMENKPKAICLLLSLNCKL-L--------------------------   53 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~-~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~--------------------------   53 (420)
                      +|+.++|+.||+.++ ++|..|. .|+||||+||..|+.++|++||++||++ .                          
T Consensus        35 ~g~~~~V~~LL~~Ga-dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (337)
T 4g8k_A           35 NEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLS  113 (337)
T ss_dssp             TTCHHHHHHHHHHTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCC-CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhh
Confidence            699999999999876 7887765 5999999999999999999999999875 3                          


Q ss_pred             -------ccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccchhcccC------CCCcc-hHHHHHhhCHHHHHHHhhc
Q psy8764          54 -------YNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRS------DKHPC-VTLALVASMPRVFESVQDK  116 (420)
Q Consensus        54 -------~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~~~------~~~~~-~~~~li~~~p~~~~~lLD~  116 (420)
                             .|..|.||||.|+..|+.++++.++.++...........      ..+.+ .+.+......++++.++++
T Consensus       114 ~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~  190 (337)
T 4g8k_A          114 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE  190 (337)
T ss_dssp             TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             ccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhc
Confidence                   456788999999999999999999988765433221110      11233 4456677788889988874

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.43  E-value=1.8e-12  Score=119.35  Aligned_cols=117  Identities=17%  Similarity=0.194  Sum_probs=93.8

Q ss_pred             CCCHHHHHHHHh---cCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHH
Q psy8764           2 SGYTNTMVHLNS---VHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAM   77 (420)
Q Consensus         2 ~G~~e~ve~LL~---~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~L   77 (420)
                      .|+.++++.|++   .++.++|..|..|+||||+|+..|+.+++++|+++|+++ ..+..|.||||+|+..|+.++++.|
T Consensus        19 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L   98 (241)
T 1k1a_A           19 QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL   98 (241)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            689999999997   244579999999999999999999999999999999999 8899999999999999999999999


Q ss_pred             HhCCCCccc-hhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          78 VTHNTRGTE-IMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        78 l~~~~~~~~-~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      +.++..... +...+..+.+..+.+......++++.++++..
T Consensus        99 l~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  140 (241)
T 1k1a_A           99 LDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA  140 (241)
T ss_dssp             HHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            988652111 11111122333455666778899999998654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.42  E-value=1.7e-13  Score=124.66  Aligned_cols=78  Identities=9%  Similarity=-0.040  Sum_probs=37.5

Q ss_pred             CCHHHHHHHHhcCCCCCCCcC-CCCChHHHHHHHcCCH----HHHHHHHHCCCcc-cccCCCCcHHHHHHHcCC------
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVD-KDGNTALHLATMENKP----KAICLLLSLNCKL-LYNCMDLSAIDYAIYYKF------   70 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D-~~G~TpLHlAa~~g~~----~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~------   70 (420)
                      |+.+.++.+++.+.   +..| ..|+||||+|+.+|+.    ++|++||++||++ ..|..|+||||+|+..|+      
T Consensus        17 g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~   93 (186)
T 3t8k_A           17 GTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGT   93 (186)
T ss_dssp             SCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHH
T ss_pred             CCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhH
Confidence            44444554444332   2222 4455555555555543    2455555555555 445555555555555444      


Q ss_pred             HHHHHHHHhCCCC
Q psy8764          71 PEAALAMVTHNTR   83 (420)
Q Consensus        71 ~evv~~Ll~~~~~   83 (420)
                      .+++++|+.++..
T Consensus        94 ~~iv~~Ll~~Gad  106 (186)
T 3t8k_A           94 TELCKIFLEKGAD  106 (186)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHCCCC
Confidence            3445555555443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.42  E-value=1.6e-12  Score=118.98  Aligned_cols=115  Identities=17%  Similarity=0.118  Sum_probs=92.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCC--Ccc-c-ccCCCCcHHHHHHHcCCHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLN--CKL-L-YNCMDLSAIDYAIYYKFPEAALAM   77 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~G--a~i-~-~n~~g~TpLh~A~~~g~~evv~~L   77 (420)
                      .|+.++++.|++.++...+..|.+|+||||+|+..|+.+++++|+++|  +++ . .+..|.||||+|+..|+.++++.|
T Consensus        12 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L   91 (228)
T 2dzn_A           12 ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL   91 (228)
T ss_dssp             TTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             hCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            689999999999988666779999999999999999999999999999  555 4 788999999999999999999999


Q ss_pred             HhCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcc
Q psy8764          78 VTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKS  117 (420)
Q Consensus        78 l~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~c  117 (420)
                      +.++.... +...+..+.+..+.+......++++.++++.
T Consensus        92 l~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  130 (228)
T 2dzn_A           92 YDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENG  130 (228)
T ss_dssp             HSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcC
Confidence            99872211 1111222233345566777889999999754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.42  E-value=2.2e-12  Score=118.74  Aligned_cols=115  Identities=16%  Similarity=0.159  Sum_probs=76.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCC----cc-cccCCCCcHHHHHHHcCCHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNC----KL-LYNCMDLSAIDYAIYYKFPEAALA   76 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga----~i-~~n~~g~TpLh~A~~~g~~evv~~   76 (420)
                      .|+.++++.|++.++ +++..|..|+||||+|+..|+.+++++|+++|+    ++ ..|..|.||||.|+..|+.++++.
T Consensus        56 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  134 (241)
T 1k1a_A           56 TTLPSVVRLLVTAGA-SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQL  134 (241)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             cCCHHHHHHHHHcCC-CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHH
Confidence            577778888877654 577777778888888888888888888877776    55 667777788888887777777777


Q ss_pred             HHhCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          77 MVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        77 Ll~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      |+.++........  ..+.+..+.+.....+++++.++++...
T Consensus       135 Ll~~g~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  175 (241)
T 1k1a_A          135 LLERGADIDAVDI--KSGRSPLIHAVENNSLSMVQLLLQHGAN  175 (241)
T ss_dssp             HHHTTCCTTCCCT--TTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCCcccccc--cCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            7777654332110  1112223445555667777777766543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.42  E-value=2.6e-13  Score=132.61  Aligned_cols=78  Identities=26%  Similarity=0.226  Sum_probs=68.1

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      |+.+++++|++.++ ++|..|.+|+||||+||..|+.++|++|+++||++ ..|..|.||||+|+..|+.+++++|+.++
T Consensus       204 ~~~~iv~~Ll~~ga-dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g  282 (301)
T 2b0o_E          204 ASLPLVDFIIQNGG-HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ  282 (301)
T ss_dssp             TTHHHHHHHHHHSS-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHhcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            78889999998765 68888888999999999999999999999999998 88888999999999999999988888764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.42  E-value=1.9e-12  Score=125.28  Aligned_cols=83  Identities=17%  Similarity=0.097  Sum_probs=78.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ ++|..|.+|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+.+|+.++++.|+.+
T Consensus        68 ~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  146 (351)
T 3utm_A           68 YNRVRIVQLLLQHGA-DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH  146 (351)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCC-CCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            689999999999876 79999999999999999999999999999999999 8999999999999999999999999998


Q ss_pred             CCCcc
Q psy8764          81 NTRGT   85 (420)
Q Consensus        81 ~~~~~   85 (420)
                      +....
T Consensus       147 g~~~~  151 (351)
T 3utm_A          147 GADPT  151 (351)
T ss_dssp             TCCTT
T ss_pred             CCCCc
Confidence            76544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.42  E-value=9.2e-13  Score=121.97  Aligned_cols=132  Identities=14%  Similarity=0.151  Sum_probs=95.6

Q ss_pred             CCCHHHHHHHHhcCCC---CCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSH---LLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAM   77 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~---~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~L   77 (420)
                      .|+.++++.|++.+..   ++|..|..|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+..|+.++++.|
T Consensus        18 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   97 (236)
T 1ikn_D           18 HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL   97 (236)
T ss_dssp             TTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            5777888888876542   58888999999999999999999999999999999 8889999999999999999999999


Q ss_pred             HhCCCCccc---hhcccCCCCcchHHHHHhhCHHHHHHHhhccccccccC--CCCcceeee
Q psy8764          78 VTHNTRGTE---IMSLRSDKHPCVTLALVASMPRVFESVQDKSITKANCK--KDSKSFYIK  133 (420)
Q Consensus        78 l~~~~~~~~---~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~~~~~--~~~~~~~i~  133 (420)
                      +.++.....   +...+..+.+..+.+......++++.++++.......+  .+.+..++.
T Consensus        98 l~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A  158 (236)
T 1ikn_D           98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA  158 (236)
T ss_dssp             HHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred             HhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence            988754221   22222222344556677778888999988766544332  334555544

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.41  E-value=1e-12  Score=128.38  Aligned_cols=113  Identities=12%  Similarity=0.084  Sum_probs=94.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCC------cCCCCChHHHHHHHc---CCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQ------VDKDGNTALHLATME---NKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFP   71 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~------~D~~G~TpLHlAa~~---g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~   71 (420)
                      .|+.+.++.|++.++ +++.      .|..|+||||+||..   |+.++|++|+++|+++ ..|..|.||||+|+..|+.
T Consensus       161 ~g~~~~v~~ll~~g~-d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~  239 (301)
T 2b0o_E          161 NRDLLSVLEAFANGQ-DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQP  239 (301)
T ss_dssp             TTCHHHHHHHHHTTC-CTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             ccCHHHHHHHHhcCC-cccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            588999999998776 6776      699999999999997   9999999999999999 8999999999999999999


Q ss_pred             HHHHHHHhCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          72 EAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        72 evv~~Ll~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      +++++|+.++......+   ..+.+....+......++++.+++...
T Consensus       240 ~~v~~Ll~~gad~~~~d---~~G~TpL~~A~~~~~~~iv~~Ll~~ga  283 (301)
T 2b0o_E          240 DCLKLLLKGRALVGTVN---EAGETALDIARKKHHKECEELLEQAQA  283 (301)
T ss_dssp             HHHHHHHHTTCCCSCCC---TTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcC---CCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence            99999999987644322   222333455677788899999987554

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.41  E-value=1.4e-12  Score=125.38  Aligned_cols=114  Identities=15%  Similarity=0.032  Sum_probs=94.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      +|+.++++.|++.++ +++..|.+|+||||+|+..|+.++|++|+++|+++..+..|.||||+|+..|+.++++.|+.++
T Consensus       102 ~g~~~~v~~Ll~~ga-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  180 (285)
T 3d9h_A          102 GGHLSCVKILLKHGA-QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG  180 (285)
T ss_dssp             TTCHHHHHHHHHTTC-CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            689999999999765 7899999999999999999999999999999999955666999999999999999999999987


Q ss_pred             CCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          82 TRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      ......   +..+.+..+.+......++++.+++....
T Consensus       181 ~~~~~~---d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  215 (285)
T 3d9h_A          181 GNIDHK---ISHLGTPLYLACENQQRACVKKLLESGAD  215 (285)
T ss_dssp             CCTTCC---BTTTBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCc---CCCCCCHHHHHHHcCcHHHHHHHHHCCCC
Confidence            653322   22223335566777788999999986543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.41  E-value=4.7e-13  Score=126.87  Aligned_cols=115  Identities=13%  Similarity=0.072  Sum_probs=86.5

Q ss_pred             CCCHHHHHHHHhcCCC----------CCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccC--------------
Q psy8764           2 SGYTNTMVHLNSVHSH----------LLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNC--------------   56 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~----------~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~--------------   56 (420)
                      .|+.++++.|++.++.          ..+..|..|+||||+||..|+.++|++|+++|+++ ..+.              
T Consensus        67 ~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  146 (273)
T 2pnn_A           67 NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFY  146 (273)
T ss_dssp             TTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCC
T ss_pred             cCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccccccccccc
Confidence            3899999999987531          12336779999999999999999999999999999 7776              


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHh---CCCCccchhcccCCCCcchHH-HHHhhC---------HHHHHHHhhccccc
Q psy8764          57 MDLSAIDYAIYYKFPEAALAMVT---HNTRGTEIMSLRSDKHPCVTL-ALVASM---------PRVFESVQDKSITK  120 (420)
Q Consensus        57 ~g~TpLh~A~~~g~~evv~~Ll~---~~~~~~~~~~~~~~~~~~~~~-~li~~~---------p~~~~~lLD~ci~~  120 (420)
                      .|.||||+|+.+|+.+++++|+.   ++......   +.. +.+|.. ++....         .++++.++++....
T Consensus       147 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~---d~~-g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  219 (273)
T 2pnn_A          147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISAR---DSV-GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL  219 (273)
T ss_dssp             SCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC---CTT-SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccCCCCceee---CCC-CCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhc
Confidence            79999999999999999999999   66543322   122 333433 333222         46777888765543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.41  E-value=5.5e-13  Score=133.18  Aligned_cols=81  Identities=16%  Similarity=0.137  Sum_probs=71.3

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++.++|..|.+|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+.+|+.+++++|+.+
T Consensus       289 ~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             SCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             hCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            588899999998776688889999999999999999999999999999999 8888999999999999999999999887


Q ss_pred             CC
Q psy8764          81 NT   82 (420)
Q Consensus        81 ~~   82 (420)
                      +.
T Consensus       369 ~a  370 (373)
T 2fo1_E          369 RP  370 (373)
T ss_dssp             C-
T ss_pred             Cc
Confidence            64

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.40  E-value=1.5e-12  Score=131.25  Aligned_cols=112  Identities=15%  Similarity=0.071  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHhcCCCCCCCcC--CCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVD--KDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D--~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      |+.++++.|++.++ ++|..|  ..|.||||+||..|+.++|++|+++|+++ ..|..|.||||+|+..|+.+++++|+.
T Consensus       211 g~~~~v~~LL~~Ga-dvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~  289 (368)
T 3jue_A          211 PSLPTMADALAHGA-DVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK  289 (368)
T ss_dssp             CCHHHHHHHHHTTC-CTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCC-CCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            89999999999776 788888  89999999999999999999999999999 999999999999999999999999999


Q ss_pred             CCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          80 HNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      ++......+   ....+....+......++++.++....
T Consensus       290 ~Gad~~~~d---~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          290 RGADLGARD---SEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             TTCCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             CcCCCCCcC---CCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            976544322   222333445666778888888886553

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.40  E-value=4.2e-13  Score=129.15  Aligned_cols=110  Identities=13%  Similarity=0.088  Sum_probs=86.0

Q ss_pred             HHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8764           5 TNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTR   83 (420)
Q Consensus         5 ~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~   83 (420)
                      .++.++|.+ +  .+|..|.+|+||||+||..|+.++|++|+++|+++ ..  +|.||||+|+..|+.++++.|+.++..
T Consensus        13 ~~v~~lL~~-~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~   87 (285)
T 3kea_A           13 KQLKSFLSS-K--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLD   87 (285)
T ss_dssp             HHHHHHHHS-T--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCC
T ss_pred             HHHHHHHHh-C--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            455555554 3  47899999999999999999999999999999999 55  499999999999999999999998765


Q ss_pred             ccchhcccCCCCcchHHHHHhhCHHHHHHHhhccccccc
Q psy8764          84 GTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKAN  122 (420)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~~~  122 (420)
                      ....   +..+.+..+.+......++++.++++......
T Consensus        88 ~~~~---d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  123 (285)
T 3kea_A           88 DSQF---DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF  123 (285)
T ss_dssp             TTCC---CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG
T ss_pred             CCCc---CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCc
Confidence            4332   12223335567777889999999988665443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.40  E-value=3.5e-12  Score=116.74  Aligned_cols=113  Identities=16%  Similarity=0.172  Sum_probs=93.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc--cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL--LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i--~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+.++++.|++.+. +++..|..|.||||+|++.|+.++|++|+++|+++  ..+..|.||||.|+..|+.++++.|+.
T Consensus        19 ~g~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~   97 (240)
T 3eu9_A           19 YGIYERCRELVEAGY-DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK   97 (240)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCChHHHHHHHHcCC-CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHH
Confidence            689999999999775 78999999999999999999999999999999999  455669999999999999999999999


Q ss_pred             CCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          80 HNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      ++......   +..+.+....++....+++++.++++..
T Consensus        98 ~g~~~~~~---~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  133 (240)
T 3eu9_A           98 YGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIAKGQ  133 (240)
T ss_dssp             TTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCCCCccc---CCCCCCHHHHHHHcCHHHHHHHHHhcCC
Confidence            87654322   1121233445666778899999998644

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.40  E-value=3.2e-12  Score=119.80  Aligned_cols=115  Identities=15%  Similarity=0.144  Sum_probs=95.6

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCC----HHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENK----PKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALA   76 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~----~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~   76 (420)
                      .|+.++++.|++..+.+++..|..|+||||+|+..|+    .+++++|+++|+++ ..|..|.||||+|+.+|+.++++.
T Consensus       158 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  237 (285)
T 1wdy_A          158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR  237 (285)
T ss_dssp             HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            4889999999997455899999999999999999999    99999999999999 899999999999999999999999


Q ss_pred             HHh-CCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          77 MVT-HNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        77 Ll~-~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      |+. ++......   +..+.+....+.....+++++.++++...
T Consensus       238 Ll~~~g~~~~~~---~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~  278 (285)
T 1wdy_A          238 LLEQEHIEINDT---DSDGKTALLLAVELKLKKIAELLCKRGAS  278 (285)
T ss_dssp             HHHSSSCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred             HHhccCCCcccc---CCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Confidence            998 44432221   22223334556777889999999987654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.39  E-value=1.9e-12  Score=130.77  Aligned_cols=113  Identities=13%  Similarity=0.084  Sum_probs=86.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ ++|..|..|.||||+||+.|+.++|++|+++|+++ ..+..|.||||+|+..|+.+++++|+.+
T Consensus        24 ~g~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  102 (437)
T 1n11_A           24 MGHLPIVKNLLQRGA-SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN  102 (437)
T ss_dssp             HTCHHHHHHHHHTTC-CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhC
Confidence            488889999998765 67888888999999999999999999999999888 7888889999999999999999999887


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      +.......   ..+.+..+.+......++++.++++..
T Consensus       103 ga~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~~~  137 (437)
T 1n11_A          103 NANPNLAT---TAGHTPLHIAAREGHVETVLALLEKEA  137 (437)
T ss_dssp             TCCTTCCC---TTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CCCCCCCC---CCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence            65433211   111233445566667777777776544

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.39  E-value=1.9e-12  Score=130.69  Aligned_cols=113  Identities=16%  Similarity=0.089  Sum_probs=67.8

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.++ .++..|..|.||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+..|+.++++.|+.+
T Consensus       222 ~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  300 (437)
T 1n11_A          222 QNQVEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH  300 (437)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            466667777776554 56666666777777777777777777777777766 6666667777777777777777766665


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      +...+..   +..+.+..+.+......++++.++++..
T Consensus       301 g~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  335 (437)
T 1n11_A          301 GVMVDAT---TRMGYTPLHVASHYGNIKLVKFLLQHQA  335 (437)
T ss_dssp             TCCTTCC---CSSCCCHHHHHHHSSCSHHHHHHHHTTC
T ss_pred             CccCCCC---CCCCCCHHHHHHHcCcHHHHHHHHhcCC
Confidence            5432211   1111222333444455666666666544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.36  E-value=3.8e-13  Score=112.47  Aligned_cols=68  Identities=21%  Similarity=0.113  Sum_probs=62.3

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKF   70 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~   70 (420)
                      .|+.++++.|++.++ ++|..|.+|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+..+.
T Consensus        50 ~~~~~~v~~Ll~~g~-~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           50 CGQLEILEFLLLKGA-DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             TTCHHHHHHHHTTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHH
T ss_pred             cCCHHHHHHHHHcCC-CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHH
Confidence            589999999999775 79999999999999999999999999999999999 999999999999954333

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.36  E-value=5.6e-12  Score=107.12  Aligned_cols=96  Identities=10%  Similarity=0.076  Sum_probs=79.7

Q ss_pred             CcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccchhcccCCCCcchH
Q psy8764          21 QVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVT   99 (420)
Q Consensus        21 ~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~~~~~~~~~~   99 (420)
                      .+|.+|+||||+||..|+.+++++|+++|+++ ..|..|.||||+|+..|+.+++++|+.++.......   ..+.+..+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~---~~g~t~L~   81 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG---YQNDSPLH   81 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---GGGCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcC---CCCCCHHH
Confidence            57899999999999999999999999999999 899999999999999999999999999876533221   11133355


Q ss_pred             HHHHhhCHHHHHHHhhcccc
Q psy8764         100 LALVASMPRVFESVQDKSIT  119 (420)
Q Consensus       100 ~~li~~~p~~~~~lLD~ci~  119 (420)
                      .+......++++.+++....
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~  101 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYGAS  101 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHcCCHHHHHHHHHcCCC
Confidence            66777889999999986543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.36  E-value=1.8e-12  Score=127.95  Aligned_cols=116  Identities=16%  Similarity=0.124  Sum_probs=92.3

Q ss_pred             CCCHHHHHHHHhc----CCCCCCC-----------------cCCCCChHHHHHHHcC--CHHHHHHHHHCCCcc-cccCC
Q psy8764           2 SGYTNTMVHLNSV----HSHLLDQ-----------------VDKDGNTALHLATMEN--KPKAICLLLSLNCKL-LYNCM   57 (420)
Q Consensus         2 ~G~~e~ve~LL~~----~~~~in~-----------------~D~~G~TpLHlAa~~g--~~~vV~lLL~~Ga~i-~~n~~   57 (420)
                      +|+.++++.|++.    +. .++.                 .|.+|.||||+|+..|  +.++|++|+++|+++ ..|..
T Consensus        94 ~g~~~~v~~Ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~  172 (364)
T 3ljn_A           94 ANKTDLVVALVEGAKERGQ-MPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA  172 (364)
T ss_dssp             TTCHHHHHHHHHHHHHHTC-CHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT
T ss_pred             cCCHHHHHHHHHhccccCC-CHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC
Confidence            4677777777775    33 3444                 8889999999999999  999999999999999 89999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCccc--hhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          58 DLSAIDYAIYYKFPEAALAMVTHNTRGTE--IMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        58 g~TpLh~A~~~g~~evv~~Ll~~~~~~~~--~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      |.||||+|+.+|+.+++++|+.++.....  +...+..+.+..+.+.....+++++.++++..
T Consensus       173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  235 (364)
T 3ljn_A          173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI  235 (364)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999999998765222  11122223445667777888999999998654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.35  E-value=2e-12  Score=106.60  Aligned_cols=98  Identities=17%  Similarity=0.122  Sum_probs=80.4

Q ss_pred             CcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccchhcccCCCCcchH
Q psy8764          21 QVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVT   99 (420)
Q Consensus        21 ~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~~~~~~~~~~   99 (420)
                      .+|++|+||||+||..|+.+++++|+++|+++ ..|..|.||||+|+..|+.+++++|+.++......   +..+.+...
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~---d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR---SKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCC---CTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCccc---CCCCCCHHH
Confidence            36889999999999999999999999999999 88999999999999999999999999987653322   222233355


Q ss_pred             HHHHhhCHHHHHHHhhcccccc
Q psy8764         100 LALVASMPRVFESVQDKSITKA  121 (420)
Q Consensus       100 ~~li~~~p~~~~~lLD~ci~~~  121 (420)
                      .+......++++.++++.....
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n  102 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVN  102 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHH
T ss_pred             HHHHCCCHHHHHHHHHcCCCCC
Confidence            5666778899999998765443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.34  E-value=1.9e-12  Score=121.04  Aligned_cols=114  Identities=11%  Similarity=-0.017  Sum_probs=77.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++++. +++. +..|.||||.|+..|+.++|++|+++|+++ ..|..|.||||+|+.+|+.+++++|+.+
T Consensus        15 ~~~~~~~~~ll~~g~-~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   92 (239)
T 1ycs_B           15 TNLRKTGSERIAHGM-RVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF   92 (239)
T ss_dssp             ------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccCC-Cccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            478899999999776 5664 478999999999999999999999999999 8999999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK  120 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~  120 (420)
                      +...+..   +..+.+..+.+......++++.++++....
T Consensus        93 ga~~~~~---d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  129 (239)
T 1ycs_B           93 GVNVNAA---DSDGWTPLHCAASCNNVQVCKFLVESGAAV  129 (239)
T ss_dssp             TCCTTCC---CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCCcc---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            7654332   222234456677788899999999876543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.34  E-value=3.9e-13  Score=123.70  Aligned_cols=82  Identities=23%  Similarity=0.179  Sum_probs=70.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++..+.++|..|.+|+||||+|+..|+.++|++|+++|+++ ..|..|.||||+|+..|+.++++.++.+
T Consensus       116 ~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~  195 (222)
T 3ehr_A          116 GGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT  195 (222)
T ss_dssp             TTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----
T ss_pred             cCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc
Confidence            689999999999845589999999999999999999999999999999999 9999999999999999999999998877


Q ss_pred             CCC
Q psy8764          81 NTR   83 (420)
Q Consensus        81 ~~~   83 (420)
                      +..
T Consensus       196 ~~~  198 (222)
T 3ehr_A          196 DAV  198 (222)
T ss_dssp             ---
T ss_pred             chh
Confidence            653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.32  E-value=5.4e-12  Score=125.96  Aligned_cols=110  Identities=14%  Similarity=0.069  Sum_probs=91.4

Q ss_pred             CHHHHHHHHhcCCCCCCC--------cCCCCChHHHHHHHcCCHHHHHHHHHCC-Ccc-cccCCCCcHHHHHHHcCCHHH
Q psy8764           4 YTNTMVHLNSVHSHLLDQ--------VDKDGNTALHLATMENKPKAICLLLSLN-CKL-LYNCMDLSAIDYAIYYKFPEA   73 (420)
Q Consensus         4 ~~e~ve~LL~~~~~~in~--------~D~~G~TpLHlAa~~g~~~vV~lLL~~G-a~i-~~n~~g~TpLh~A~~~g~~ev   73 (420)
                      +.++++.|++.++ +++.        .|..|+||||+||..|+.++|++|+++| +++ ..|..|.||||+|+.+|+.++
T Consensus       250 ~~~~v~~Ll~~g~-~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~i  328 (373)
T 2fo1_E          250 QVASAKLLVEKGA-KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV  328 (373)
T ss_dssp             HHHHHHHHHHHTC-CSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             hHHHHHHHHHCCC-CcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHH
Confidence            8899999999876 5554        6789999999999999999999999876 999 899999999999999999999


Q ss_pred             HHHHHhCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcc
Q psy8764          74 ALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKS  117 (420)
Q Consensus        74 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~c  117 (420)
                      +++|+.++......+   ..+.+....+......++++.++++.
T Consensus       329 v~~Ll~~gad~~~~d---~~g~t~l~~A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          329 VMYLIQQGASVEAVD---ATDHTARQLAQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             HHHHHHTTCCSSCCC---SSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHcCCCccCCC---CCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999976544322   22233455667778899999888754

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.32  E-value=2.9e-12  Score=129.22  Aligned_cols=80  Identities=16%  Similarity=0.149  Sum_probs=75.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.+++++|++.++ ++|..|..|+||||+|+..|+.++|++||++||++ ..|..|.||||+|+..|+.+++++|+..
T Consensus       245 ~g~~~iv~~LL~~Ga-dvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~  323 (368)
T 3jue_A          245 ANSLLACEFLLQNGA-NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA  323 (368)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            589999999999875 79999999999999999999999999999999999 9999999999999999999999999876


Q ss_pred             CC
Q psy8764          81 NT   82 (420)
Q Consensus        81 ~~   82 (420)
                      +.
T Consensus       324 ~~  325 (368)
T 3jue_A          324 KM  325 (368)
T ss_dssp             HC
T ss_pred             CC
Confidence            54

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.31  E-value=6.7e-12  Score=103.48  Aligned_cols=92  Identities=8%  Similarity=-0.008  Sum_probs=69.5

Q ss_pred             CCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccchhcccCCCCc
Q psy8764          18 LLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHP   96 (420)
Q Consensus        18 ~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~~~~~~~   96 (420)
                      ..+..|.+|+||||+||..|+.+++++|+++|+++ ..|..|.||||+|+.+|+.+++++|+.++......   +..+.+
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~---d~~g~t   92 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ---DKFGKT   92 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC---CTTSCC
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc---ccCCCc
Confidence            45678899999999999999999999999999999 88999999999999999999999999987654322   222233


Q ss_pred             chHHHHHhhCHHHHHH
Q psy8764          97 CVTLALVASMPRVFES  112 (420)
Q Consensus        97 ~~~~~li~~~p~~~~~  112 (420)
                      ....+......++++.
T Consensus        93 pl~~A~~~~~~~~~~~  108 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEI  108 (110)
T ss_dssp             HHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHH
Confidence            3444555566665543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.31  E-value=1e-12  Score=122.96  Aligned_cols=81  Identities=14%  Similarity=0.104  Sum_probs=74.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-ccc-CCCCcHHHHH--HHcCCHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYN-CMDLSAIDYA--IYYKFPEAALAM   77 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n-~~g~TpLh~A--~~~g~~evv~~L   77 (420)
                      +|+.+++++|++.++ ++|..|..|+||||+||..|+.++|++|+++|+++ ..+ ..|.||||+|  +..|+.+++++|
T Consensus        64 ~g~~~~v~~Ll~~ga-~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~L  142 (229)
T 2vge_A           64 GANYSIVDFLITAGA-NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYL  142 (229)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHH
Confidence            689999999999876 79999999999999999999999999999999999 654 7999999999  999999999999


Q ss_pred             HhCCCC
Q psy8764          78 VTHNTR   83 (420)
Q Consensus        78 l~~~~~   83 (420)
                      +.++..
T Consensus       143 l~~ga~  148 (229)
T 2vge_A          143 ADVEQS  148 (229)
T ss_dssp             HHHHHH
T ss_pred             HHcCCC
Confidence            987643

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.31  E-value=3.1e-12  Score=114.61  Aligned_cols=69  Identities=25%  Similarity=0.280  Sum_probs=63.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcC-CCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVD-KDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFP   71 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D-~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~   71 (420)
                      .|+.++++.|++.++ ++|..| .+|+||||+|+..|+.+++++|+++|+++ ..|..|.||||+|+..++.
T Consensus        86 ~~~~~~v~~Ll~~ga-~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~  156 (183)
T 3deo_A           86 LGSDKCVRLLAEAGA-DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT  156 (183)
T ss_dssp             HTCHHHHHHHHHTTC-CTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCC-CCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC
Confidence            489999999999876 788887 89999999999999999999999999999 9999999999999976543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.29  E-value=4.4e-12  Score=115.30  Aligned_cols=110  Identities=7%  Similarity=-0.044  Sum_probs=88.0

Q ss_pred             HHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCC------HHHHHHHHHCCCcc-cccCCCC-cHHHHHHHcC-----CH
Q psy8764           5 TNTMVHLNSVHSHLLDQVDKDGNTALHLATMENK------PKAICLLLSLNCKL-LYNCMDL-SAIDYAIYYK-----FP   71 (420)
Q Consensus         5 ~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~------~~vV~lLL~~Ga~i-~~n~~g~-TpLh~A~~~g-----~~   71 (420)
                      .+++++|++.++ ++|.+|.+|+||||+|+..|+      .++|++|+++||++ .+|..|. ||||+|+..|     +.
T Consensus        55 ~~iv~~Ll~~Ga-dvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~  133 (186)
T 3t8k_A           55 YKISMFLINKGA-DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMI  133 (186)
T ss_dssp             HHHHHHHHHTTC-CSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHH
T ss_pred             HHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHH
Confidence            469999999876 899999999999999999998      58899999999999 9999999 9999999955     45


Q ss_pred             HHHHHHHh-CCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          72 EAALAMVT-HNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        72 evv~~Ll~-~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      +++++|+. ++......+   ..+.++...+.....|++++.+++...
T Consensus       134 ~iv~~Ll~~~gad~~~~d---~~G~TpL~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          134 PLYKLIFSQSGLQLLIKD---KWGLTALEFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             HHHHHHHTSTTCCTTCCC---TTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcccC---CCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence            68999998 776544322   222333445556678898888887543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.28  E-value=2.4e-11  Score=111.09  Aligned_cols=116  Identities=10%  Similarity=0.009  Sum_probs=87.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++......+..|+||||+|+..|+.+++++|+++|+++ ..+..|.||||.|+..|+.++++.|+.+
T Consensus        52 ~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  131 (240)
T 3eu9_A           52 NNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK  131 (240)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence            689999999999887544455666999999999999999999999999999 8899999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchH-HHHHhhC-HHHHHHHhhcccccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVT-LALVASM-PRVFESVQDKSITKA  121 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~li~~~-p~~~~~lLD~ci~~~  121 (420)
                      +.......   .. +.+|. .++.... +++.+.+++......
T Consensus       132 ~~~~~~~~---~~-g~t~l~~a~~~~~~~~~~~~L~~~~~~~~  170 (240)
T 3eu9_A          132 GQDVDMMD---QN-GMTPLMWAAYRTHSVDPTRLLLTFNVSVN  170 (240)
T ss_dssp             TCCTTCCC---TT-SCCHHHHHHHHCCSSTTHHHHHHTTCCTT
T ss_pred             CCCccccC---CC-CCcHHHHHHHhCChHHHHHHHHhcCCCcc
Confidence            65433221   11 22333 3332332 566666666555433

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.28  E-value=5.5e-12  Score=118.69  Aligned_cols=66  Identities=26%  Similarity=0.320  Sum_probs=61.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcC-CCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHc
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVD-KDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYY   68 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D-~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~   68 (420)
                      +|+.+++++|++.++ ++|..| ..|+||||+||..|+.++|++|+++|+++ ..|..|.||||+|+..
T Consensus        87 ~g~~~~v~~Ll~~ga-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~  154 (244)
T 3ui2_A           87 LGSDKCVRLLAEAGA-DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI  154 (244)
T ss_dssp             HTCHHHHHHHHHTTC-CTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCC-CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH
Confidence            589999999999876 788887 88999999999999999999999999999 8999999999999863

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.27  E-value=5e-12  Score=124.10  Aligned_cols=110  Identities=15%  Similarity=0.045  Sum_probs=81.8

Q ss_pred             HHHHHHHHhcCCCCCCC-cCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCC---HHHHHHHHh
Q psy8764           5 TNTMVHLNSVHSHLLDQ-VDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKF---PEAALAMVT   79 (420)
Q Consensus         5 ~e~ve~LL~~~~~~in~-~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~---~evv~~Ll~   79 (420)
                      .++++.|++.+. ++|. .|.+|+||||+||..|+.++|++||++||++ ..|..|.||||+|+.+|+   .++++.|+.
T Consensus       110 ~~~~~~l~~~g~-dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~  188 (327)
T 1sw6_A          110 QEVNDAFPNTQL-NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD  188 (327)
T ss_dssp             HHHHHHCTTSCC-CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcCC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHH
Confidence            467777777655 7998 8999999999999999999999999999999 999999999999999998   566666665


Q ss_pred             CCCCccchhcccCCCCcchH-HHHH----hhCHHHHHHHhhccc
Q psy8764          80 HNTRGTEIMSLRSDKHPCVT-LALV----ASMPRVFESVQDKSI  118 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~-~~li----~~~p~~~~~lLD~ci  118 (420)
                      ....  .+...+.. +.+|. .+..    ....++++.+++...
T Consensus       189 ~~~~--~~~~~d~~-g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~  229 (327)
T 1sw6_A          189 YLYP--CLILEDSM-NRTILHHIIITSGMTGCSAAAKYYLDILM  229 (327)
T ss_dssp             HHGG--GGGEECTT-CCCHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             hhhc--cccCCCCC-CCCHHHHHHHHccccccHHHHHHHHHHHH
Confidence            4321  11112222 33343 3333    456777777777543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.26  E-value=1.1e-11  Score=121.67  Aligned_cols=78  Identities=19%  Similarity=0.039  Sum_probs=72.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCC---HHHHHHHHHCC-Ccc-cccCCCCcHHHHHHH----cCCHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENK---PKAICLLLSLN-CKL-LYNCMDLSAIDYAIY----YKFPE   72 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~---~~vV~lLL~~G-a~i-~~n~~g~TpLh~A~~----~g~~e   72 (420)
                      .|+.+++++|++.++ ++|.+|.+|+||||+|+..|+   .++++.|++.+ +++ ..|..|.||||+|+.    .|+.+
T Consensus       141 ~g~~~~v~~Ll~~Ga-d~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~  219 (327)
T 1sw6_A          141 IANLELVKHLVKHGS-NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSA  219 (327)
T ss_dssp             TTCHHHHHHHHHTTC-CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHH
T ss_pred             cCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHH
Confidence            689999999999875 799999999999999999999   78889999887 778 899999999999999    99999


Q ss_pred             HHHHHHhC
Q psy8764          73 AALAMVTH   80 (420)
Q Consensus        73 vv~~Ll~~   80 (420)
                      +++.|+..
T Consensus       220 ~v~~Ll~~  227 (327)
T 1sw6_A          220 AAKYYLDI  227 (327)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999865

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.10  E-value=1.2e-11  Score=125.04  Aligned_cols=112  Identities=12%  Similarity=0.045  Sum_probs=75.3

Q ss_pred             CCCHHHHHHHHhcCCCC--CCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc----cccCCCCcHHHHHHHcCCHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHL--LDQVDKDGNTALHLATMENKPKAICLLLSLNCKL----LYNCMDLSAIDYAIYYKFPEAAL   75 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~--in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i----~~n~~g~TpLh~A~~~g~~evv~   75 (420)
                      +|+.++++.|++.++..  .+..|..|.||||+||.+||.++|++|+++|+++    ..+++ .||||+|+.+|+.++++
T Consensus       102 ~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~  180 (376)
T 2aja_A          102 TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLN  180 (376)
T ss_dssp             HCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHH
Confidence            58888888888877632  2345667888999999999999999999888763    22222 88999999999999999


Q ss_pred             HHHhCCCCccc--hhcccCCCCcchHHHH-HhhCHHHHHHHhhcc
Q psy8764          76 AMVTHNTRGTE--IMSLRSDKHPCVTLAL-VASMPRVFESVQDKS  117 (420)
Q Consensus        76 ~Ll~~~~~~~~--~~~~~~~~~~~~~~~l-i~~~p~~~~~lLD~c  117 (420)
                      +|+.++.....  .+   ..+.+..+.+. ..+..++++.+++..
T Consensus       181 ~Ll~~ga~~~~~~~d---~~g~TpL~~Aa~~~G~~eiv~~Ll~~g  222 (376)
T 2aja_A          181 RLCELAPTEATAMIQ---AENYYAFRWAAVGRGHHNVINFLLDCP  222 (376)
T ss_dssp             HHHHSCGGGHHHHHH---HHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             HHHHcCCccchhccC---CCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence            88888764322  11   11122233455 566778888887744

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.08  E-value=3.8e-11  Score=121.30  Aligned_cols=77  Identities=12%  Similarity=0.089  Sum_probs=62.8

Q ss_pred             CCCHHHHHHHHhcCCC----CCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-c--ccCCCCcHHHHHH-HcCCHHH
Q psy8764           2 SGYTNTMVHLNSVHSH----LLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-L--YNCMDLSAIDYAI-YYKFPEA   73 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~----~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~--~n~~g~TpLh~A~-~~g~~ev   73 (420)
                      +||.+++++|++.++.    +++..  + +||||+||.+||.++|++|+++|+++ .  .|..|.||||+|+ .+|+.++
T Consensus       138 ~G~~eiv~~Ll~~gad~~~~~i~~~--~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~ei  214 (376)
T 2aja_A          138 NGHLHVLNRLCELAPTEIMAMIQAE--N-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV  214 (376)
T ss_dssp             TTCHHHHHHHHHSCTTTHHHHHSHH--H-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred             cCCHHHHHHHHhCCCCccccccCCC--C-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHH
Confidence            6888999999987752    23322  2 89999999999999999999999887 5  7888889999999 9999999


Q ss_pred             HHHHHhCC
Q psy8764          74 ALAMVTHN   81 (420)
Q Consensus        74 v~~Ll~~~   81 (420)
                      +++|+.++
T Consensus       215 v~~Ll~~g  222 (376)
T 2aja_A          215 INFLLDCP  222 (376)
T ss_dssp             HHHHTTSH
T ss_pred             HHHHHhCC
Confidence            99998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	420
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.003
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 8   MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAI 66
            + L  + +++L+  D +G+T L++A        +  LL       + N   L  +D+  
Sbjct: 241 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 5e-05
 Identities = 24/170 (14%), Positives = 48/170 (28%), Gaps = 10/170 (5%)

Query: 21  QVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT 79
            VD+ GNT LH  T     + +  L+         + M  S +  A+       +     
Sbjct: 102 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 161

Query: 80  HNTRGTEIMSLRSDKH--PCVTLALVASMPRVFESVQDKS------ITKANCKKDSKSFY 131
                   + L    +      + + + M     + +         I K   +       
Sbjct: 162 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 221

Query: 132 IKYNFSCLQCLRIYPEINEKTGDATAISKPIPLPALN-NTALHLATISHH 180
            K +    +       I E       I+  +     N +T L++A    +
Sbjct: 222 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 271

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 8   MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAI 66
           +V     H   ++   K G + LH A  +     + LLL         +    + +  A 
Sbjct: 312 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 371

Query: 67  YYKFPEAA 74
              +    
Sbjct: 372 RLGYISVT 379

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 10/125 (8%)

Query: 18  LLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLY----NCMDLSAIDYAIYYKFPEA 73
           +   V +DG+TALHLA +      +  LL  +    Y    N +  +A+  A        
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 74  ALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITKANCKKDSKSFYIK 133
              +                     T   +A   R           + +  +D+   Y+ 
Sbjct: 61  VEKLYAAGAGVLVAE------RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114

Query: 134 YNFSC 138
            +  C
Sbjct: 115 QSQDC 119

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKLLYNCMDL 59
              +   +  L       ++  D DG TAL LA      K   LL         +C DL
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST--DCGDL 284

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 8/47 (17%), Positives = 20/47 (42%)

Query: 1   MSGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLS 47
             G+   +  L    +  +   +  G+TA  LA +  + + + L+ +
Sbjct: 108 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	420
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.62
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.61
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.53
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.53
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.51
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.49
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.49
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.48
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.47
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.44
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.43
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.42
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.41
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.41
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.4
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.39
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.36
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.36
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.34
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.34
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.31
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.29
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.29
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.27
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.26
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.25
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.23
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.23
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.16
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.15
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.09
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.07
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.02
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	98.91

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.4e-17  Score=141.14  Aligned_cols=84  Identities=12%  Similarity=0.082  Sum_probs=78.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++ ++|.+|++|+||||+|+..|+.+++++|+++|+++ ..|.+|+||||+|+.+|+.++++.|+++
T Consensus        11 ~G~~~~v~~Ll~~g~-d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~   89 (130)
T d1ycsb1          11 EGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES   89 (130)
T ss_dssp             HTCHHHHHHHTSTTS-SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCC-CccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHHHc
Confidence            599999999999776 79999999999999999999999999999999999 8999999999999999999999999999


Q ss_pred             CCCccc
Q psy8764          81 NTRGTE   86 (420)
Q Consensus        81 ~~~~~~   86 (420)
                      +.....
T Consensus        90 ga~v~~   95 (130)
T d1ycsb1          90 GAAVFA   95 (130)
T ss_dssp             TCCTTC
T ss_pred             CCCccc
Confidence            865443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=4.7e-16  Score=136.06  Aligned_cols=80  Identities=19%  Similarity=0.193  Sum_probs=64.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.+++++|++.++ ++|..|.+|+||||+||+.|+.++|++|+++|+++ ..|..|.||||+|+++|+.+++++|++.
T Consensus        58 ~~~~~iv~~Ll~~ga-din~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          58 RTSLHIVDFLVQNSG-NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             TTTHHHHHHHHHHCS-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCC-ChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            366788888888765 67888888888888888888888888888888888 7788888888888888888888888765


Q ss_pred             CC
Q psy8764          81 NT   82 (420)
Q Consensus        81 ~~   82 (420)
                      ++
T Consensus       137 ~~  138 (154)
T d1dcqa1         137 LS  138 (154)
T ss_dssp             HT
T ss_pred             CC
Confidence            43

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=4.2e-16  Score=129.62  Aligned_cols=83  Identities=12%  Similarity=0.140  Sum_probs=78.0

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++ ++|..|.+|+||||+||..|+.+++++|+++|+++ ..|..|.||||+|+.+|+.+++++|+++
T Consensus        12 ~g~~~~v~~Ll~~g~-d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~   90 (118)
T d1myoa_          12 NGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK   90 (118)
T ss_dssp             TTCHHHHHHHHTTTC-CCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTT
T ss_pred             CCCHHHHHHHHHhhh-ccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhhhhhhhcc
Confidence            699999999999875 79999999999999999999999999999999999 8999999999999999999999999998


Q ss_pred             CCCcc
Q psy8764          81 NTRGT   85 (420)
Q Consensus        81 ~~~~~   85 (420)
                      +....
T Consensus        91 Gad~~   95 (118)
T d1myoa_          91 GADKT   95 (118)
T ss_dssp             CCCSS
T ss_pred             cccce
Confidence            76543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.3e-15  Score=122.70  Aligned_cols=109  Identities=13%  Similarity=0.038  Sum_probs=89.3

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCC-cHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDL-SAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~-TpLh~A~~~g~~evv~~Ll~   79 (420)
                      +|+.++++.|++.++ ++|..|.+|.||||+|+ .|+.++|++|+++|+++ ..+..|. ||||.|+.+|+.+++++|+.
T Consensus        13 ~G~~~~v~~Ll~~ga-d~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~   90 (125)
T d1bi7b_          13 RGRVEEVRALLEAGA-NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR   90 (125)
T ss_dssp             HTCHHHHHHHHTTTC-CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCC-ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            599999999999775 79999999999999775 79999999999999999 7777665 69999999999999999999


Q ss_pred             CCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhh
Q psy8764          80 HNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQD  115 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD  115 (420)
                      ++......   +..+.+..+.+......++++.+++
T Consensus        91 ~ga~~~~~---d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          91 AGARLDVR---DAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCCSSCC---CTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccc---cCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            87654322   2222333555777788999988875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=4.3e-14  Score=123.34  Aligned_cols=112  Identities=13%  Similarity=0.037  Sum_probs=87.5

Q ss_pred             CCCHHHHHHHHhcCCCCCCC------cCCCCChHHHHHHHc---CCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQ------VDKDGNTALHLATME---NKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFP   71 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~------~D~~G~TpLHlAa~~---g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~   71 (420)
                      +|+...+..++..+. +++.      .+..|+||||+|++.   |+.++|++|+++|+++ .+|..|.||||+|+.+|+.
T Consensus        16 ~~dl~~l~~~~~~g~-d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~   94 (154)
T d1dcqa1          16 TRDIFGLLQAYADGV-DLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA   94 (154)
T ss_dssp             TTCHHHHHHHHHTTC-CTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hCCHHHHHHHHHcCC-CcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccc
Confidence            466777777887654 3333      378899999999974   7889999999999999 9999999999999999999


Q ss_pred             HHHHHHHhCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcc
Q psy8764          72 EAALAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKS  117 (420)
Q Consensus        72 evv~~Ll~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~c  117 (420)
                      ++++.|++++......   +..+.++...+......++++.+++..
T Consensus        95 ~~v~~Ll~~gad~~~~---d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          95 ECLKLLLRGKASIEIA---NESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHHHHHHHTTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccccCcccccc---CCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            9999999987654432   222233344566777899998888643

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.3e-14  Score=131.51  Aligned_cols=80  Identities=19%  Similarity=0.137  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHN   81 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~   81 (420)
                      |+.++++.|++.++...+..+..|.||||+||+.|+.++|++|+++||++ .+|..|.||||+|+.+|+.+++++|+++|
T Consensus       169 ~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~G  248 (255)
T d1oy3d_         169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG  248 (255)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred             cccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            44455555555444333333444555555555555555555555555555 44555555555555555555555555554


Q ss_pred             C
Q psy8764          82 T   82 (420)
Q Consensus        82 ~   82 (420)
                      +
T Consensus       249 a  249 (255)
T d1oy3d_         249 A  249 (255)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.3e-14  Score=119.93  Aligned_cols=77  Identities=14%  Similarity=0.050  Sum_probs=70.4

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCC-hHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGN-TALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~-TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+.++++.|++.++ ++|..|..|. ||||+||+.|+.++|++|+++|+++ ..|..|+||||+|+.+|+.|++++|+.
T Consensus        45 ~g~~~~v~~Ll~~ga-~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          45 MGSARVAELLLLHGA-EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TTCHHHHHHHHTTTC-CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            589999999999876 6888888776 6999999999999999999999999 899999999999999999999999874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.49  E-value=3.6e-14  Score=126.29  Aligned_cols=75  Identities=23%  Similarity=0.104  Sum_probs=50.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAM   77 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~L   77 (420)
                      .|..++++.+++.+. .+|..|.+|+||||+||..|+.++|++||++||++ ..|..|+||||+|+.+|+.++|++|
T Consensus       133 ~~~~~~~~~l~~~~~-~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         133 VNNTEAVNILLMHHA-NRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCcceeeeeeccccc-cccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            355666666666554 46666667777777777777777777777777777 6666777777777777777776654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=5.2e-14  Score=119.65  Aligned_cols=74  Identities=23%  Similarity=0.162  Sum_probs=69.0

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHH
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAM   77 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~L   77 (420)
                      ++.++++.++..++ +.+.+|.+|+||||+||..|+.++|++|+++|+++ ..|.+|.||||+|+.+|+.|++++|
T Consensus        78 ~~~~~~~~l~~~~~-~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHGA-DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccceeeecccccCC-ccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            56788999998766 78899999999999999999999999999999999 8899999999999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.7e-14  Score=119.98  Aligned_cols=110  Identities=13%  Similarity=0.087  Sum_probs=86.3

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|++.+. +++..+.+|.+|+++|+..|+.++++.++++|+++ ..|+.|.||||+|+..|+.+++++|+. 
T Consensus        45 ~~~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~-  122 (156)
T d1bd8a_          45 FGSTAIALELLKQGA-SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-  122 (156)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccccccccccccccCCCCeeeccccccccccccccccc-
Confidence            478899999998766 68888999999999999999999999999999999 888899999999999999999998874 


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDK  116 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~  116 (420)
                      +...   ...+..+.++.+.+......++++.++++
T Consensus       123 ~~~~---~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         123 ESDL---HRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TSCT---TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccc---cccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            3221   11122223334556777788888888764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.3e-13  Score=120.84  Aligned_cols=114  Identities=13%  Similarity=0.107  Sum_probs=95.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.++ +++..|.+|+||||+|+..|+.+++++|+++|+++ ..|..|.||||.|+..|+.++++.|..+
T Consensus        80 ~~~~~i~~~Ll~~~~-d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          80 AGRDEIVKALLGKGA-QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             HTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccchhHHHhccCc-eeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            478999999999776 78999999999999999999999999999999999 8899999999999999999999999987


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSIT  119 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~  119 (420)
                      +...+..   +..+.+..+.+.....+++++.+++....
T Consensus       159 ~~~i~~~---d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad  194 (223)
T d1uoha_         159 KASTNIQ---DTEGNTPLHLACDEERVEEAKLLVSQGAS  194 (223)
T ss_dssp             TCCSCCC---CTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cceeeec---cCCCCceeccccccCcHHHHHHHHHCCCC
Confidence            7643322   22324445567777889999999986543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.1e-13  Score=134.73  Aligned_cols=108  Identities=17%  Similarity=0.166  Sum_probs=80.1

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.+++++|++.++ +++..+..+.||||.|+..|+.++++.++++|+++ .+|..|.||||+|+++|+.+++++|+++
T Consensus       274 ~~~~~i~~~Ll~~g~-~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~  352 (408)
T d1n11a_         274 EGHVPVADVLIKHGV-MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN  352 (408)
T ss_dssp             HTCHHHHHHHHHHTC-CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHCCC-ccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            367888888888665 67888888888888888888888888888888888 7888888888888888888888888888


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHH
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESV  113 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~l  113 (420)
                      |+.....   +.++.++...+...+..++++.+
T Consensus       353 GAd~n~~---d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         353 GASPNEV---SSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             TCCSCCC---CSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCC---CCCCCCHHHHHHHcCCHHHHHHH
Confidence            7654422   22223334455555566666544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.42  E-value=7.6e-15  Score=143.70  Aligned_cols=115  Identities=11%  Similarity=0.073  Sum_probs=84.1

Q ss_pred             CCCHHHHHH---HHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-ccc--CCCCcHHHHHHHcCCHHHHH
Q psy8764           2 SGYTNTMVH---LNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYN--CMDLSAIDYAIYYKFPEAAL   75 (420)
Q Consensus         2 ~G~~e~ve~---LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n--~~g~TpLh~A~~~g~~evv~   75 (420)
                      +||.+++++   |++.+ .++|..|.+|+||||+||++||.++|++|+++|+++ ..+  .+|.||||+|+.+||.|+|+
T Consensus       100 ~g~~~~~~~~~~L~~~~-~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~  178 (346)
T d2ajaa1         100 TGCSSALDTLCLLLTSD-EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN  178 (346)
T ss_dssp             HCCHHHHHHHTTC--CC-SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHH
T ss_pred             hCCHHHHHHHHHHHhCC-CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHH
Confidence            588877776   56655 489999999999999999999999999999999999 544  46999999999999999999


Q ss_pred             HHHhCCCCccchhcccCCCCcchHH-HHHhhCHHHHHHHhhccc
Q psy8764          76 AMVTHNTRGTEIMSLRSDKHPCVTL-ALVASMPRVFESVQDKSI  118 (420)
Q Consensus        76 ~Ll~~~~~~~~~~~~~~~~~~~~~~-~li~~~p~~~~~lLD~ci  118 (420)
                      +|+.++........... .+.+++. +...+..++++.+++...
T Consensus       179 ~Ll~~~~~~~~~~~~~~-~~~t~l~~A~~~g~~~iv~~Ll~~ga  221 (346)
T d2ajaa1         179 RLCELAPTEATAMIQAE-NYYAFRWAAVGRGHHNVINFLLDCPV  221 (346)
T ss_dssp             HHHHSCGGGHHHHHHHH-HHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             HHHHcCCcccccccccC-CCcchhhHHhhcCHHHHHHHHHhCCC
Confidence            99998754332211111 1223443 333467888888887543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.4e-13  Score=126.03  Aligned_cols=83  Identities=14%  Similarity=0.055  Sum_probs=71.2

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHH-CCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLS-LNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~-~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +..++++.|++.++ ++|.+|.+|.||||.|+..|+.++|++||+ .|+++ ..|.+|.||||+|+.+|+.+++++|+++
T Consensus       197 ~~~~i~~~Li~~ga-~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~  275 (285)
T d1wdya_         197 DVEAITHLLLDHGA-DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR  275 (285)
T ss_dssp             THHHHHHHHHHTTC-CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCC-CCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            34568888888765 688889999999999999999999999997 48899 8889999999999999999999999998


Q ss_pred             CCCccc
Q psy8764          81 NTRGTE   86 (420)
Q Consensus        81 ~~~~~~   86 (420)
                      |+..++
T Consensus       276 GAd~n~  281 (285)
T d1wdya_         276 GASTDC  281 (285)
T ss_dssp             SSCSCC
T ss_pred             CCCCCc
Confidence            876554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.2e-13  Score=129.30  Aligned_cols=80  Identities=15%  Similarity=0.105  Sum_probs=75.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++|+.|++.|+ ++|..|.+|+||||+||+.|+.++|++||++||++ ..|..|.||||+|+.+|+.++++.|+..
T Consensus        10 ~g~~~~v~~Ll~~g~-~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~   88 (408)
T d1n11a_          10 MGHLPIVKNLLQRGA-SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN   88 (408)
T ss_dssp             HTCHHHHHHHHHTTC-CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            589999999999875 79999999999999999999999999999999999 9999999999999999999999999865


Q ss_pred             CC
Q psy8764          81 NT   82 (420)
Q Consensus        81 ~~   82 (420)
                      ..
T Consensus        89 ~~   90 (408)
T d1n11a_          89 NA   90 (408)
T ss_dssp             TC
T ss_pred             hh
Confidence            43

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.40  E-value=3.5e-13  Score=124.31  Aligned_cols=78  Identities=17%  Similarity=0.146  Sum_probs=72.7

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+.+.++.++...+.+.+..|..|+||||+||+.|+.++|++|+++||++ .+|..|.||||+|+.+|+.|++++|.+
T Consensus       197 ~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         197 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             SCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            578889998887777788899999999999999999999999999999999 999999999999999999999999975

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1e-12  Score=111.73  Aligned_cols=112  Identities=16%  Similarity=0.113  Sum_probs=92.6

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.|+++++ ++|.+|.+|+||||+|+ .|+.+++++|+++|+++ ..+..|.+|++.|+.+|+.+.+..++.+
T Consensus        11 ~g~~~~v~~Ll~~g~-d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~   88 (156)
T d1ihba_          11 RGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF   88 (156)
T ss_dssp             HTCHHHHHHHTTSCC-CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCC-CcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccccccccccc
Confidence            589999999999876 79999999999999886 79999999999999999 8999999999999999999999999988


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      +......+   .........+....-++.++.+++++.
T Consensus        89 ~~~~~~~~---~~~~~~l~~a~~~~~~~~~~~Ll~~~~  123 (156)
T d1ihba_          89 QADVNIED---NEGNLPLHLAAKEGHLRVVEFLVKHTA  123 (156)
T ss_dssp             TCCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cccccccc---ccccccccccccccccccccccccccc
Confidence            76433221   111222444666677888888888764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-12  Score=118.01  Aligned_cols=109  Identities=15%  Similarity=0.064  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      +|+.++++.|++.+. +++.+|.+|.||||+|+..|+.+++++|++.|+++ ..|..|.||||.|+..|+.+++++|+.+
T Consensus       113 ~~~~e~~~~Ll~~g~-d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~  191 (223)
T d1uoha_         113 KNRHEIAVMLLEGGA-NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ  191 (223)
T ss_dssp             HTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCC-CCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHC
Confidence            478999999999775 78999999999999999999999999999999999 8999999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhh
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQD  115 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD  115 (420)
                      +......+    ..+.+|+.-...+.+++++.+++
T Consensus       192 Gad~~~~d----~~g~tpl~~A~~~~~~i~~~Ll~  222 (223)
T d1uoha_         192 GASIYIEN----KEEKTPLQVAKGGLGLILKRMVE  222 (223)
T ss_dssp             TCCSCCCC----TTSCCHHHHCCTTHHHHHHHHHC
T ss_pred             CCCCCCCC----CCCCCHHHHHHCCCHHHHhcccC
Confidence            86544322    12344554334566777776664

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-12  Score=111.58  Aligned_cols=110  Identities=15%  Similarity=0.088  Sum_probs=93.3

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++|+.||+.++.++|..|..|+||||+|+ .|+.++|+.|+++|+++ ..+..|.+|++.|+..++.++++.++.+
T Consensus        12 ~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~   90 (156)
T d1bd8a_          12 RGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH   90 (156)
T ss_dssp             HTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            599999999999877789999999999999987 58999999999999999 8899999999999999999999999998


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhh
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQD  115 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD  115 (420)
                      +...+..   +..+..+.+.+.....+++++.+++
T Consensus        91 ~~~~n~~---~~~~~t~L~~A~~~~~~~i~~~L~~  122 (156)
T d1bd8a_          91 GADVNVP---DGTGALPIHLAVQEGHTAVVSFLAA  122 (156)
T ss_dssp             TCCSCCC---CTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccccccc---cCCCCeeeccccccccccccccccc
Confidence            7643322   2222444666778889999887765

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=3.7e-13  Score=121.24  Aligned_cols=110  Identities=15%  Similarity=0.035  Sum_probs=85.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCC-Ccc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLN-CKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~G-a~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      .|+.++++.|+..+. ..+..|.+|+||||+|+..|+.++++.|+++| .++ ..|..|.||||+|+.+|+.++++.|+.
T Consensus       115 ~~~~~~~~~l~~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~  193 (229)
T d1ixva_         115 KKWFEVSQFLIENGA-SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE  193 (229)
T ss_dssp             TTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cchhhhhhhhhhhcc-cccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHH
Confidence            578999999999775 67889999999999999999999999999997 466 789999999999999999999999996


Q ss_pred             C-CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccc
Q psy8764          80 H-NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSI  118 (420)
Q Consensus        80 ~-~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci  118 (420)
                      . +......+   .. +.+|..-.  --+++.+.++++.+
T Consensus       194 ~~gad~~~~d---~~-g~t~l~~A--~~~~~~~~Ll~~g~  227 (229)
T d1ixva_         194 KYGAEYDLVD---NK-GAKAEDVA--LNEQVKKFFLNNVV  227 (229)
T ss_dssp             HHCCCSCCCC---TT-SCCTGGGC--SCHHHHHHHHHHCC
T ss_pred             hcCCCCCCcC---CC-CCCHHHHH--hhHHHHHHHHHcCC
Confidence            4 55444322   11 22222211  13467788888654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=6.5e-13  Score=121.61  Aligned_cols=77  Identities=18%  Similarity=0.172  Sum_probs=39.0

Q ss_pred             CCHHHHHHHHhcCC--CCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8764           3 GYTNTMVHLNSVHS--HLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVT   79 (420)
Q Consensus         3 G~~e~ve~LL~~~~--~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~   79 (420)
                      |+.++++.|++.++  ..+|..|.+|+||||+||..|+.++|++|+++||++ ..|.+|.||||+|+..|+.++++.|+.
T Consensus        20 ~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~   99 (255)
T d1oy3d_          20 QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ   99 (255)
T ss_dssp             TCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSS
T ss_pred             CCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHh
Confidence            45555555554332  124444555555555555555555555555555555 445555555555555555555555544

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.7e-13  Score=112.12  Aligned_cols=78  Identities=18%  Similarity=0.159  Sum_probs=69.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-ccc-CCCCcHHHHH--HHcCCHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYN-CMDLSAIDYA--IYYKFPEAALAM   77 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n-~~g~TpLh~A--~~~g~~evv~~L   77 (420)
                      +|+.++++.|++.++ ++|.+|.+|+||||+|+.+|+.++|++|+++||++ ..+ ..|+||+++|  +.+|+.|++++|
T Consensus        44 ~~~~~~~~~ll~~g~-~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L  122 (130)
T d1ycsb1          44 AGHTEIVKFLVQFGV-NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL  122 (130)
T ss_dssp             HTCHHHHHHHHHHTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             ccccccccccccccc-ccccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHH
Confidence            588999999999876 79999999999999999999999999999999999 555 5688987776  577999999999


Q ss_pred             HhC
Q psy8764          78 VTH   80 (420)
Q Consensus        78 l~~   80 (420)
                      +..
T Consensus       123 ~~~  125 (130)
T d1ycsb1         123 YGV  125 (130)
T ss_dssp             HHH
T ss_pred             HhH
Confidence            753

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=7.9e-12  Score=105.79  Aligned_cols=78  Identities=17%  Similarity=0.149  Sum_probs=54.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++++.||+.++ +++ .|..|+||||+|+..++.++++.++..+... ..+..+.++++.++...+.+.++.+..+
T Consensus        12 ~g~~~~v~~LL~~ga-~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   89 (153)
T d1awcb_          12 AGQDDEVRILMANGA-PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH   89 (153)
T ss_dssp             HTCHHHHHHHHHHTC-CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHcCC-Ccc-cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeeccccc
Confidence            599999999999886 555 6999999999999999999987766555444 3444444455555555555555544444


Q ss_pred             C
Q psy8764          81 N   81 (420)
Q Consensus        81 ~   81 (420)
                      +
T Consensus        90 ~   90 (153)
T d1awcb_          90 G   90 (153)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=7.4e-12  Score=112.51  Aligned_cols=115  Identities=16%  Similarity=0.092  Sum_probs=88.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc----cccCCCCcHHHHHHHcCCHHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL----LYNCMDLSAIDYAIYYKFPEAALAM   77 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i----~~n~~g~TpLh~A~~~g~~evv~~L   77 (420)
                      +|+.++++.|++.++..++.+|.+|+||||+||..|+.++|++|+++|+++    ..+..|.||+|+|+..+..++++.+
T Consensus        10 ~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (229)
T d1ixva_          10 ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL   89 (229)
T ss_dssp             HTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccc
Confidence            589999999999887789999999999999999999999999999999988    3567899999999999999999998


Q ss_pred             HhCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcc
Q psy8764          78 VTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKS  117 (420)
Q Consensus        78 l~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~c  117 (420)
                      +..+....... .......+..........++.+.+++..
T Consensus        90 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~  128 (229)
T d1ixva_          90 YDRPLKPDLNK-ITNQGVTCLHLAVGKKWFEVSQFLIENG  128 (229)
T ss_dssp             HSSSSCCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccccccccccc-cccccccccccccccchhhhhhhhhhhc
Confidence            87764322211 1111122233444555677777776643

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.2e-12  Score=116.55  Aligned_cols=113  Identities=17%  Similarity=0.238  Sum_probs=69.6

Q ss_pred             CCCHHHHHHHHhcCCC-----CCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc--cccCCCCcHHHHHHHcCCHHHH
Q psy8764           2 SGYTNTMVHLNSVHSH-----LLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL--LYNCMDLSAIDYAIYYKFPEAA   74 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~-----~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i--~~n~~g~TpLh~A~~~g~~evv   74 (420)
                      +|+.++++.|++.+..     ..+....+|.||||.|+..|+.+.+++|+..|+.+  ..+..|.||||+|+..|+.+++
T Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v  161 (221)
T d1iknd_          82 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV  161 (221)
T ss_dssp             HTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHH
Confidence            4667777777765321     23344556777888888888888888777777777  3445677888888888888888


Q ss_pred             HHHHhCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhcc
Q psy8764          75 LAMVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKS  117 (420)
Q Consensus        75 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~c  117 (420)
                      +.|+.++.......   .++.+..+.+......++++.++...
T Consensus       162 ~~Ll~~gad~~~~~---~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         162 SLLLKCGADVNRVT---YQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             HHHHTTTCCSCCCC---TTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             HHHHhcCCcccccC---CCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            88777765433221   12122223333444566666665543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.27  E-value=6e-12  Score=117.30  Aligned_cols=82  Identities=17%  Similarity=0.210  Sum_probs=72.6

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.++|+.||+.|+ ++|..|.+|.||||+|+++|+.++|++|+++|++. ..+..+.|||+.|+..|+.++++.|+.+
T Consensus        50 ~G~~~~v~~Ll~~Ga-dvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~  128 (291)
T d1s70b_          50 SGDTEEVLRLLERGA-DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ  128 (291)
T ss_dssp             HTCHHHHHHHHHHCC-CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCC-CCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhccccc
Confidence            488999999999775 68999999999999999999999999999999998 7788899999999999999999999988


Q ss_pred             CCCc
Q psy8764          81 NTRG   84 (420)
Q Consensus        81 ~~~~   84 (420)
                      +...
T Consensus       129 ~~~~  132 (291)
T d1s70b_         129 GAHV  132 (291)
T ss_dssp             TCCT
T ss_pred             Cccc
Confidence            7543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-11  Score=107.67  Aligned_cols=62  Identities=24%  Similarity=0.413  Sum_probs=56.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHH----CCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy8764          24 KDGNTALHLATMENKPKAICLLLS----LNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGT   85 (420)
Q Consensus        24 ~~G~TpLHlAa~~g~~~vV~lLL~----~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~   85 (420)
                      ++|+||||+||..|+.++|+.|++    .|+++ ..|..|.||||+|+.+|+.++++.|+.++....
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~   67 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM   67 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccc
Confidence            479999999999999999998874    89999 899999999999999999999999999876543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.1e-13  Score=116.00  Aligned_cols=71  Identities=15%  Similarity=0.086  Sum_probs=43.8

Q ss_pred             CCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHH
Q psy8764           3 GYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAA   74 (420)
Q Consensus         3 G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv   74 (420)
                      ++.++++.+++.+. ..+..|.+|+||||+||..|+.++|++|+++|||+ .+|.+|.||||+|+++|+.|++
T Consensus       155 ~~~~~~~~~~~~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         155 NSLSMVQLLLQHGA-NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             TCHHHHHHHHHTTC-CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             hhhhhhhhhhhhcc-ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCcccc
Confidence            44555666665443 45566666666666666666666666666666666 5666666666666666666554

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.26  E-value=1e-12  Score=122.61  Aligned_cols=69  Identities=19%  Similarity=0.173  Sum_probs=60.2

Q ss_pred             CCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccc
Q psy8764          18 LLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTE   86 (420)
Q Consensus        18 ~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~   86 (420)
                      .....+..|.||||+|+..|+.++++.|+++|+++ ..+..|.||||+|+..|+.++|++|+.++.....
T Consensus       191 ~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~  260 (291)
T d1s70b_         191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA  260 (291)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             ccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            45667888999999999999999999999999999 8888999999999999999999999998765443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.25  E-value=2.3e-12  Score=118.66  Aligned_cols=79  Identities=19%  Similarity=0.219  Sum_probs=70.3

Q ss_pred             CCCHHHHHHHH--------hcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHH
Q psy8764           2 SGYTNTMVHLN--------SVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPE   72 (420)
Q Consensus         2 ~G~~e~ve~LL--------~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~e   72 (420)
                      +|+.++++.|+        +.|+ ++|.+|.+|+||||+|+++|+.++|++|+++||++ .+|..|.|||+.|+..|+.+
T Consensus        43 ~g~~~~v~~Ll~~~~~~~l~~Ga-dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~  121 (277)
T d2fo1e1          43 NSSAEKSEDLIVHEAKECIAAGA-DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG  121 (277)
T ss_dssp             TTCCSCCTTHHHHHHHHHHHTCC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred             cCCHHHHHHHHhcchhHHHHcCC-CccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchh
Confidence            57777777664        5444 89999999999999999999999999999999999 89999999999999999999


Q ss_pred             HHHHHHhCC
Q psy8764          73 AALAMVTHN   81 (420)
Q Consensus        73 vv~~Ll~~~   81 (420)
                      ++..+....
T Consensus       122 ~~~~l~~~~  130 (277)
T d2fo1e1         122 MMVYMLNST  130 (277)
T ss_dssp             HHHHHTTSH
T ss_pred             hhhhhhhcc
Confidence            999887654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.5e-11  Score=104.39  Aligned_cols=112  Identities=14%  Similarity=0.073  Sum_probs=92.4

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTH   80 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~   80 (420)
                      .|+.+++++|++.++ +++..+..|.||++.|+..|+.+.++.|++.|.++ ..+..|.+|+|.|+..|+.++++.|+.+
T Consensus        43 ~~~~ei~~~Ll~~~a-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  121 (156)
T d1ihba_          43 LGNPEIARRLLLRGA-NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH  121 (156)
T ss_dssp             SSCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccccc-ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            478999999999876 78999999999999999999999999999999999 8899999999999999999999999988


Q ss_pred             CCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhc
Q psy8764          81 NTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDK  116 (420)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~  116 (420)
                      +......  .+..+.++.+.+.....+++++.++++
T Consensus       122 ~~~~~~~--~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_         122 TASNVGH--RNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             SCCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccc--cCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            7532211  122223445566777789999888864

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=9.8e-12  Score=102.60  Aligned_cols=91  Identities=8%  Similarity=-0.065  Sum_probs=75.5

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCCccchhcccCCCCcchHHHHHhh
Q psy8764          27 NTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTRGTEIMSLRSDKHPCVTLALVAS  105 (420)
Q Consensus        27 ~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~~~~~~~~~~~~~~~~~~~li~~  105 (420)
                      +|||++|+++|+.++|+.|+++|+++ ..|..|+||||+|+.+|+.++++.++.++...+..   +..+.+..+.+....
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~---d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP---DKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCC---SSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeec---ccccccchhhhhhcC
Confidence            48999999999999999999999999 89999999999999999999999999987654332   222233355667777


Q ss_pred             CHHHHHHHhhccccc
Q psy8764         106 MPRVFESVQDKSITK  120 (420)
Q Consensus       106 ~p~~~~~lLD~ci~~  120 (420)
                      .+++++.++++....
T Consensus        80 ~~~~v~~Ll~~Gad~   94 (118)
T d1myoa_          80 HVSCVKLLLSKGADK   94 (118)
T ss_dssp             CCHHHHHHHTTCCCS
T ss_pred             chhhhhhhhcccccc
Confidence            899999999876543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=1.4e-10  Score=102.46  Aligned_cols=105  Identities=17%  Similarity=0.096  Sum_probs=85.7

Q ss_pred             CHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy8764           4 YTNTMVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNT   82 (420)
Q Consensus         4 ~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~   82 (420)
                      .....+.|.+.+. +++.+|..|+||||.|+..|..++++.|+++++++ ..|..|.||||.|+.+|+.++++.|++++.
T Consensus       102 ~~~~~~~L~~~~~-~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga  180 (209)
T d1ot8a_         102 IEGMVEDLITADA-DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA  180 (209)
T ss_dssp             CTTHHHHHHHTTC-CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             chhhhhhhhhhcc-cccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCC
Confidence            4456677787665 78999999999999999999999999999999999 889999999999999999999999999987


Q ss_pred             CccchhcccCCCCcchHHHHHhhCHHHHHH
Q psy8764          83 RGTEIMSLRSDKHPCVTLALVASMPRVFES  112 (420)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~li~~~p~~~~~  112 (420)
                      +....   +..+.++.+.+......++++.
T Consensus       181 d~n~~---d~~g~Tpl~~A~~~~~~~iv~l  207 (209)
T d1ot8a_         181 NREIT---DHMDRLPRDVASERLHHDIVRL  207 (209)
T ss_dssp             CTTCC---CTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCCCc---CCCCCCHHHHHHHcCCHHHHhh
Confidence            64322   2222333456677777777764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3e-11  Score=108.86  Aligned_cols=75  Identities=19%  Similarity=0.205  Sum_probs=64.3

Q ss_pred             HHHHHhcCCCCCCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8764           8 MVHLNSVHSHLLDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALAMVTHNTR   83 (420)
Q Consensus         8 ve~LL~~~~~~in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~Ll~~~~~   83 (420)
                      ++.+.+.+ ..+|..|.+|+||||+||..|+.+++++|+++|+++ ..|..|.||||.|+.+|+.++++.++..+..
T Consensus        22 i~~~~~~~-~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~   97 (221)
T d1iknd_          22 IRQVKGDL-AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT   97 (221)
T ss_dssp             CC-----C-CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTT
T ss_pred             HHHHHhCC-CCcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccc
Confidence            34444544 479999999999999999999999999999999999 8999999999999999999999999987544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.09  E-value=5.6e-12  Score=122.91  Aligned_cols=81  Identities=10%  Similarity=-0.064  Sum_probs=69.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcC--CCCChHHHHHHHcCCHHHHHHHHHCCCcc----cccCCCCcHHHHHHHcCCHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVD--KDGNTALHLATMENKPKAICLLLSLNCKL----LYNCMDLSAIDYAIYYKFPEAAL   75 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D--~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i----~~n~~g~TpLh~A~~~g~~evv~   75 (420)
                      +||.++|+.|++.++ +++..|  .+|+||||+||.+||.++|++|+++|++.    ..+..|.||+|.|+.+|+.++++
T Consensus       136 ~G~~~~v~~Ll~~g~-~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~  214 (346)
T d2ajaa1         136 NGHLHVLNRLCELAP-TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN  214 (346)
T ss_dssp             TTCHHHHHHHHHSCT-TTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             CCCHHHHHHHHHcCC-CccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHH
Confidence            699999999999876 566654  46999999999999999999999999876    23456778889999999999999


Q ss_pred             HHHhCCCC
Q psy8764          76 AMVTHNTR   83 (420)
Q Consensus        76 ~Ll~~~~~   83 (420)
                      +|++++..
T Consensus       215 ~Ll~~ga~  222 (346)
T d2ajaa1         215 FLLDCPVM  222 (346)
T ss_dssp             HHTTSHHH
T ss_pred             HHHhCCCC
Confidence            99987643

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=4.2e-10  Score=106.70  Aligned_cols=53  Identities=23%  Similarity=0.130  Sum_probs=48.9

Q ss_pred             CCCCc-CCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCC
Q psy8764          18 LLDQV-DKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKF   70 (420)
Q Consensus        18 ~in~~-D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~   70 (420)
                      ++|.. |++|+||||+||..|+.++|++|+++||++ .+|+.|.||||.|+..|+
T Consensus        98 dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_          98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhccc
Confidence            56644 999999999999999999999999999999 999999999999998765

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.5e-09  Score=99.74  Aligned_cols=117  Identities=15%  Similarity=0.140  Sum_probs=92.9

Q ss_pred             CCCHHHHHHHHhcCCCCCCCcCCCCChHHHHHHHc----CCHHHHHHHHHCCCcc-cccCCCCcHHHHHHHcCCHHHHHH
Q psy8764           2 SGYTNTMVHLNSVHSHLLDQVDKDGNTALHLATME----NKPKAICLLLSLNCKL-LYNCMDLSAIDYAIYYKFPEAALA   76 (420)
Q Consensus         2 ~G~~e~ve~LL~~~~~~in~~D~~G~TpLHlAa~~----g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~~~g~~evv~~   76 (420)
                      .|+.++++.|++..+.+++..|..|.++++.+...    +..++++.|+++|+++ .++..|.||||.|+..|+.++++.
T Consensus       158 ~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~  237 (285)
T d1wdya_         158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR  237 (285)
T ss_dssp             HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHH
Confidence            47889999999877778999999999988876553    3557999999999999 889999999999999999999999


Q ss_pred             HHhCCCCccchhcccCCCCcchHHHHHhhCHHHHHHHhhccccc
Q psy8764          77 MVTHNTRGTEIMSLRSDKHPCVTLALVASMPRVFESVQDKSITK  120 (420)
Q Consensus        77 Ll~~~~~~~~~~~~~~~~~~~~~~~li~~~p~~~~~lLD~ci~~  120 (420)
                      |+......  +...+.++.+..+.+.....+++++.+++.....
T Consensus       238 lL~~~g~d--in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~  279 (285)
T d1wdya_         238 LLEQEHIE--INDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             HHHSSSCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             HHHcCCCC--CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            99754321  2222223234455678888999999999876643

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=2e-10  Score=109.02  Aligned_cols=48  Identities=23%  Similarity=0.356  Sum_probs=46.4

Q ss_pred             CCCcCCCCChHHHHHHHcCCHHHHHHHHHCCCcc-cccCCCCcHHHHHH
Q psy8764          19 LDQVDKDGNTALHLATMENKPKAICLLLSLNCKL-LYNCMDLSAIDYAI   66 (420)
Q Consensus        19 in~~D~~G~TpLHlAa~~g~~~vV~lLL~~Ga~i-~~n~~g~TpLh~A~   66 (420)
                      +|.+|.+|+||||+||++|+.++|++|+++||++ ..|+.|.||||+|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            7889999999999999999999999999999999 99999999999985