Psyllid ID: psy8787

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
MPNNPTLSLLKLPLQCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSERGASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEICSK
ccccccccccccccccccHHHHHHHHHccccccccccccccccccEEEEEcccccccccccccHHHHcccccccccccEEEEEEEccccccccccEEEEccccccccccccccccccccccccEEEEEEEEccccccccccccccEEEEEccccccccccEEEEcccEEEEEEEccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHHHHccccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcc
cccccEEEEEccccccHHHHHHHHHHHHHcccccccccEEEEEEccccccHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHHHHccEEEcccccccccccccEccccccccHHHHHHHHccEEEEEcccccccccccccccccEEEEEEcccccccccEEEEccccEEEEEEEEHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHccEEEEEEEEHHHHHHHHHHcHHHccEEEEcHHHHHHHHHHHHHHcccccccccEEEccccEEEEcccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcc
mpnnptlsllklplqcntvETISYLTLSELISAQyintpsisqwswrglkvqglgefnlyanvrpcrslegyptlyddvDVVTIrentegeysgieheivdgvcnsnyatkwfsergasvefnlyanvrpcrslegyptlyddvDVVTIrentegeysgiehEIVDGVVQSIKLITEEASSRVAEFAFEYaktnnrskvTAVHKANIMRMSDGLFLRCCRDAAekfpevkfeEKYLDTVCLnmvqdptqydvlvmpnlygdiLSDMCAGlvgglgltpsgniglngalfesvhgtapdiagkdlaNPTALLLSAVMMLRHLDLNTHADVIQKAALDTIkegkyrtgdlggkakcseftneicsk
mpnnptlsllklplQCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEgeysgieheivdGVCNSNYATKWFSERGASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTegeysgieheivDGVVQSIKLITEEASSRVAEFAfeyaktnnrskvtavHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKegkyrtgdlggkakcseftneicsk
MPNNPTLSLLKLPLQCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSERGASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEICSK
*******SLLKLPLQCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSERGASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLG***************
*****T***LKLPLQCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSERGASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEICSK
MPNNPTLSLLKLPLQCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSERGASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEICSK
**NNPTLSLLKLPLQCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSERGASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEICSK
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MPNNPTLSLLKLPLQCNTVETISYLTLSELISAQYINTPSISQWSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSERGASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEICSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query364 2.2.26 [Sep-21-2011]
Q9VWH4377 Probable isocitrate dehyd yes N/A 0.903 0.872 0.684 1e-130
Q9D6R2366 Isocitrate dehydrogenase yes N/A 0.667 0.663 0.774 1e-108
Q93714358 Probable isocitrate dehyd yes N/A 0.667 0.678 0.754 1e-108
P50213366 Isocitrate dehydrogenase yes N/A 0.667 0.663 0.770 1e-107
Q5R678366 Isocitrate dehydrogenase yes N/A 0.667 0.663 0.770 1e-107
P41563366 Isocitrate dehydrogenase yes N/A 0.667 0.663 0.766 1e-107
Q28480347 Isocitrate dehydrogenase N/A N/A 0.667 0.700 0.766 1e-107
Q99NA5366 Isocitrate dehydrogenase yes N/A 0.667 0.663 0.762 1e-106
Q945K7374 Isocitrate dehydrogenase yes N/A 0.664 0.647 0.674 1e-96
Q8LG77374 Isocitrate dehydrogenase no N/A 0.664 0.647 0.662 4e-94
>sp|Q9VWH4|IDH3A_DROME Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=l(1)G0156 PE=2 SV=1 Back     alignment and function desciption
 Score =  464 bits (1194), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/349 (68%), Positives = 272/349 (77%), Gaps = 20/349 (5%)

Query: 33  AQYINTPSISQWSWRGLKV------QGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRE 86
           +Q   TP+ S+    G K        G+G   + A V+   +    P  ++ VDV  +R 
Sbjct: 31  SQVNATPAASRSYSSGTKKVTLIPGDGIGP-EISAAVQKIFTAANVPIEWEAVDVTPVR- 88

Query: 87  NTEGEYSGIEHEIVDGVCNSNYATKW-------FSERGASV----EFNLYANVRPCRSLE 135
             +G++ GI    +D V  +    K           R  ++    EFNLYANVRPCRSLE
Sbjct: 89  GPDGKF-GIPQAAIDSVNTNKIGLKGPLMTPVGKGHRSLNLALRKEFNLYANVRPCRSLE 147

Query: 136 GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNN 195
           GY TLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEAS RVAE+AF+YAK NN
Sbjct: 148 GYKTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASKRVAEYAFQYAKNNN 207

Query: 196 RSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVM 255
           R KVT VHKANIMRMSDGLFLRC RD A+KFPE++FEEKYLDTVCLNMVQ+P +YDVLVM
Sbjct: 208 RKKVTVVHKANIMRMSDGLFLRCVRDMAQKFPEIQFEEKYLDTVCLNMVQNPGKYDVLVM 267

Query: 256 PNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAV 315
           PNLYGDILSDMCAGLVGGLGLTPSGN+GLNGALFESVHGTAPDIAGKDLANPTALLLSAV
Sbjct: 268 PNLYGDILSDMCAGLVGGLGLTPSGNMGLNGALFESVHGTAPDIAGKDLANPTALLLSAV 327

Query: 316 MMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEICSK 364
           MMLRH++LNT+AD I++AA +TIKEGKY TGDLGG+AKCSEFTNEIC+K
Sbjct: 328 MMLRHMELNTYADKIERAAFETIKEGKYLTGDLGGRAKCSEFTNEICAK 376

Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 1
>sp|Q9D6R2|IDH3A_MOUSE Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Mus musculus GN=Idh3a PE=1 SV=1 Back     alignment and function description
>sp|Q93714|IDH3A_CAEEL Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=F43G9.1 PE=1 SV=3 Back     alignment and function description
>sp|P50213|IDH3A_HUMAN Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Homo sapiens GN=IDH3A PE=1 SV=1 Back     alignment and function description
>sp|Q5R678|IDH3A_PONAB Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Pongo abelii GN=IDH3A PE=2 SV=1 Back     alignment and function description
>sp|P41563|IDH3A_BOVIN Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Bos taurus GN=IDH3A PE=1 SV=1 Back     alignment and function description
>sp|Q28480|IDH3A_MACFA Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3A PE=2 SV=2 Back     alignment and function description
>sp|Q99NA5|IDH3A_RAT Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Idh3a PE=1 SV=1 Back     alignment and function description
>sp|Q945K7|IDH5_ARATH Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial OS=Arabidopsis thaliana GN=IDH5 PE=1 SV=1 Back     alignment and function description
>sp|Q8LG77|IDH6_ARATH Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial OS=Arabidopsis thaliana GN=IDH6 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
195446778379 GK25509 [Drosophila willistoni] gi|19416 0.912 0.875 0.678 1e-128
195345721377 GM22739 [Drosophila sechellia] gi|194134 0.909 0.877 0.680 1e-128
442616937377 lethal (1) G0156, isoform D [Drosophila 0.903 0.872 0.684 1e-128
24643268354 lethal (1) G0156, isoform A [Drosophila 0.909 0.935 0.674 1e-128
195059454354 GH17867 [Drosophila grimshawi] gi|193896 0.909 0.935 0.668 1e-128
194892970377 GG18052 [Drosophila erecta] gi|190649428 0.903 0.872 0.684 1e-128
195133678377 GI16435 [Drosophila mojavensis] gi|19390 0.909 0.877 0.669 1e-127
198471047373 GA11495 [Drosophila pseudoobscura pseudo 0.909 0.887 0.676 1e-127
194762984377 GF20487 [Drosophila ananassae] gi|190629 0.890 0.859 0.686 1e-127
193594238358 PREDICTED: probable isocitrate dehydroge 0.667 0.678 0.885 1e-127
>gi|195446778|ref|XP_002070920.1| GK25509 [Drosophila willistoni] gi|194167005|gb|EDW81906.1| GK25509 [Drosophila willistoni] Back     alignment and taxonomy information
 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/352 (67%), Positives = 273/352 (77%), Gaps = 20/352 (5%)

Query: 30  LISAQYINTPSISQWSWRGLKV------QGLGEFNLYANVRPCRSLEGYPTLYDDVDVVT 83
           +I AQ   TP+ S+    G K        G+G   + A V+   +    P  ++ VDV  
Sbjct: 30  IIKAQVNTTPAASRAYSSGTKKVTLIPGDGIGP-EISAAVQKIFTAANVPIEWEAVDVTP 88

Query: 84  IRENTEGEYSGIEHEIVDGVCNSNYATKW-------FSERGASV----EFNLYANVRPCR 132
           +R   +G++ GI    +D V  +    K           R  ++    EFNLYANVRPCR
Sbjct: 89  VR-GPDGKF-GIPQAAIDSVNTNKIGLKGPLMTPVGKGHRSLNLALRKEFNLYANVRPCR 146

Query: 133 SLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYAK 192
           SLEGY TLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEAS RVAE+AF+YAK
Sbjct: 147 SLEGYKTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASKRVAEYAFQYAK 206

Query: 193 TNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDV 252
            NNR KVT VHKANIMRMSDGLFLRC RD A+KFPE++FEEKYLDTVCLNMVQ+P +YDV
Sbjct: 207 NNNRRKVTVVHKANIMRMSDGLFLRCVRDMAQKFPEIQFEEKYLDTVCLNMVQNPKKYDV 266

Query: 253 LVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLL 312
           LVMPNLYGDILSDMCAGLVGGLGLTPSGN+GLNGALFESVHGTAPDIAGKDLANPTALLL
Sbjct: 267 LVMPNLYGDILSDMCAGLVGGLGLTPSGNMGLNGALFESVHGTAPDIAGKDLANPTALLL 326

Query: 313 SAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTNEICSK 364
           SAVMMLRH++LN++AD I++AA +TIKE KY TGDLGG+AKCSEFTNEIC+K
Sbjct: 327 SAVMMLRHMELNSYADKIERAAFETIKESKYLTGDLGGRAKCSEFTNEICAK 378

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195345721|ref|XP_002039417.1| GM22739 [Drosophila sechellia] gi|194134643|gb|EDW56159.1| GM22739 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|442616937|ref|NP_001259705.1| lethal (1) G0156, isoform D [Drosophila melanogaster] gi|195567723|ref|XP_002107408.1| GD15579 [Drosophila simulans] gi|46396044|sp|Q9VWH4.1|IDH3A_DROME RecName: Full=Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; AltName: Full=Isocitric dehydrogenase subunit alpha; AltName: Full=NAD(+)-specific ICDH subunit alpha; Flags: Precursor gi|194204815|gb|EDX18391.1| GD15579 [Drosophila simulans] gi|345091100|gb|ADR83724.2| LP13001p1 [Drosophila melanogaster] gi|440216942|gb|AGB95545.1| lethal (1) G0156, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|24643268|ref|NP_573388.1| lethal (1) G0156, isoform A [Drosophila melanogaster] gi|386764719|ref|NP_728257.2| lethal (1) G0156, isoform C [Drosophila melanogaster] gi|22832574|gb|AAN09496.1| lethal (1) G0156, isoform A [Drosophila melanogaster] gi|383293484|gb|AAF48965.2| lethal (1) G0156, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195059454|ref|XP_001995640.1| GH17867 [Drosophila grimshawi] gi|193896426|gb|EDV95292.1| GH17867 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|194892970|ref|XP_001977779.1| GG18052 [Drosophila erecta] gi|190649428|gb|EDV46706.1| GG18052 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195133678|ref|XP_002011266.1| GI16435 [Drosophila mojavensis] gi|193907241|gb|EDW06108.1| GI16435 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|198471047|ref|XP_001355481.2| GA11495 [Drosophila pseudoobscura pseudoobscura] gi|198145742|gb|EAL32540.2| GA11495 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|194762984|ref|XP_001963614.1| GF20487 [Drosophila ananassae] gi|190629273|gb|EDV44690.1| GF20487 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|193594238|ref|XP_001951769.1| PREDICTED: probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
FB|FBgn0027291377 l(1)G0156 "lethal (1) G0156" [ 0.848 0.819 0.721 2.3e-117
UNIPROTKB|F1NFD9360 IDH3A "Uncharacterized protein 0.667 0.675 0.795 1.4e-101
UNIPROTKB|F1NJ97336 IDH3A "Uncharacterized protein 0.667 0.723 0.795 1.4e-101
ZFIN|ZDB-GENE-040426-1007365 idh3a "isocitrate dehydrogenas 0.667 0.665 0.774 2.4e-99
MGI|MGI:1915084366 Idh3a "isocitrate dehydrogenas 0.667 0.663 0.774 6.4e-99
UNIPROTKB|E2RHM4366 IDH3A "Isocitrate dehydrogenas 0.667 0.663 0.770 1.3e-98
UNIPROTKB|F1RKU0366 IDH3A "Isocitrate dehydrogenas 0.667 0.663 0.770 3.5e-98
UNIPROTKB|B7Z9J8257 IDH3A "cDNA, FLJ78950, highly 0.667 0.945 0.770 4.5e-98
UNIPROTKB|P50213366 IDH3A "Isocitrate dehydrogenas 0.667 0.663 0.770 4.5e-98
UNIPROTKB|F1MN74366 IDH3A "Isocitrate dehydrogenas 0.667 0.663 0.766 5.8e-98
FB|FBgn0027291 l(1)G0156 "lethal (1) G0156" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1156 (412.0 bits), Expect = 2.3e-117, P = 2.3e-117
 Identities = 233/323 (72%), Positives = 263/323 (81%)

Query:    53 GLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKW 112
             G+G   + A V+   +    P  ++ VDV  +R   +G++ GI    +D V  +    K 
Sbjct:    57 GIGP-EISAAVQKIFTAANVPIEWEAVDVTPVR-GPDGKF-GIPQAAIDSVNTNKIGLKG 113

Query:   113 -------FSERGASV----EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIE 161
                       R  ++    EFNLYANVRPCRSLEGY TLYDDVDVVTIRENTEGEYSGIE
Sbjct:   114 PLMTPVGKGHRSLNLALRKEFNLYANVRPCRSLEGYKTLYDDVDVVTIRENTEGEYSGIE 173

Query:   162 HEIVDGVVQSIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRD 221
             HEIVDGVVQSIKLITEEAS RVAE+AF+YAK NNR KVT VHKANIMRMSDGLFLRC RD
Sbjct:   174 HEIVDGVVQSIKLITEEASKRVAEYAFQYAKNNNRKKVTVVHKANIMRMSDGLFLRCVRD 233

Query:   222 AAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGN 281
              A+KFPE++FEEKYLDTVCLNMVQ+P +YDVLVMPNLYGDILSDMCAGLVGGLGLTPSGN
Sbjct:   234 MAQKFPEIQFEEKYLDTVCLNMVQNPGKYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGN 293

Query:   282 IGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEG 341
             +GLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRH++LNT+AD I++AA +TIKEG
Sbjct:   294 MGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHMELNTYADKIERAAFETIKEG 353

Query:   342 KYRTGDLGGKAKCSEFTNEICSK 364
             KY TGDLGG+AKCSEFTNEIC+K
Sbjct:   354 KYLTGDLGGRAKCSEFTNEICAK 376
GO:0005759 "mitochondrial matrix" evidence=ISS
GO:0004449 "isocitrate dehydrogenase (NAD+) activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISS;IDA
GO:0006099 "tricarboxylic acid cycle" evidence=ISS
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0005811 "lipid particle" evidence=IDA
GO:0005875 "microtubule associated complex" evidence=IDA
UNIPROTKB|F1NFD9 IDH3A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJ97 IDH3A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1007 idh3a "isocitrate dehydrogenase 3 (NAD+) alpha" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1915084 Idh3a "isocitrate dehydrogenase 3 (NAD+) alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHM4 IDH3A "Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RKU0 IDH3A "Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z9J8 IDH3A "cDNA, FLJ78950, highly similar to Isocitrate dehydrogenase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P50213 IDH3A "Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MN74 IDH3A "Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R678IDH3A_PONAB1, ., 1, ., 1, ., 4, 10.77040.66750.6639yesN/A
O29627LEU3_ARCFU1, ., 1, ., 1, ., 8, 50.51020.66200.7392yesN/A
O27441LEU3_METTH1, ., 1, ., 1, ., 8, 50.47100.65930.7294yesN/A
Q945K7IDH5_ARATH1, ., 1, ., 1, ., 4, 10.67480.66480.6470yesN/A
O94230IDH2_KLULA1, ., 1, ., 1, ., 4, 10.57080.66750.6603yesN/A
Q28480IDH3A_MACFA1, ., 1, ., 1, ., 4, 10.76630.66750.7002N/AN/A
Q9VWH4IDH3A_DROME1, ., 1, ., 1, ., 4, 10.68480.90380.8726yesN/A
P41563IDH3A_BOVIN1, ., 1, ., 1, ., 4, 10.76630.66750.6639yesN/A
Q9USP8IDH2_SCHPO1, ., 1, ., 1, ., 4, 10.60970.66750.6411yesN/A
P50455LEU3_SULTO1, ., 1, ., 1, ., 8, 50.4520.65930.7121yesN/A
Q9UXB2LEU3_SULSO1, ., 1, ., 1, ., 8, 50.46960.65100.7053yesN/A
Q93714IDH3A_CAEEL1, ., 1, ., 1, ., 4, 10.75400.66750.6787yesN/A
Q9D6R2IDH3A_MOUSE1, ., 1, ., 1, ., 4, 10.77450.66750.6639yesN/A
P50213IDH3A_HUMAN1, ., 1, ., 1, ., 4, 10.77040.66750.6639yesN/A
Q99NA5IDH3A_RAT1, ., 1, ., 1, ., 4, 10.76220.66750.6639yesN/A
Q58130LEU3_METJA1, ., 1, ., 1, ., 8, 30.45740.66480.7267yesN/A
Q55BI2IDHA_DICDI1, ., 1, ., 1, ., 4, 10.61880.66750.6864yesN/A
P28241IDH2_YEAST1, ., 1, ., 1, ., 4, 10.55460.66750.6585yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.963
4th Layer1.1.1.850.914

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
TIGR00175333 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, 1e-146
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 1e-146
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 1e-126
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 1e-107
PRK14025330 PRK14025, PRK14025, multifunctional 3-isopropylmal 1e-102
PRK08997334 PRK08997, PRK08997, isocitrate dehydrogenase; Prov 1e-101
PLN00123360 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+ 2e-97
PRK09222 482 PRK09222, PRK09222, isocitrate dehydrogenase; Vali 2e-95
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 2e-94
TIGR02924 473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 3e-75
PRK00772358 PRK00772, PRK00772, 3-isopropylmalate dehydrogenas 9e-73
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 3e-63
TIGR02089352 TIGR02089, TTC, tartrate dehydrogenase 2e-58
TIGR00169346 TIGR00169, leuB, 3-isopropylmalate dehydrogenase 9e-58
PRK03437344 PRK03437, PRK03437, 3-isopropylmalate dehydrogenas 2e-56
PRK08194352 PRK08194, PRK08194, tartrate dehydrogenase; Provis 4e-54
TIGR00183416 TIGR00183, prok_nadp_idh, isocitrate dehydrogenase 5e-54
PRK07006409 PRK07006, PRK07006, isocitrate dehydrogenase; Revi 9e-49
PRK06451412 PRK06451, PRK06451, isocitrate dehydrogenase; Vali 1e-44
PLN02329409 PLN02329, PLN02329, 3-isopropylmalate dehydrogenas 1e-39
PRK07362474 PRK07362, PRK07362, isocitrate dehydrogenase; Vali 4e-26
TIGR00175333 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, 5e-24
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 2e-21
PLN00123360 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+ 2e-18
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 3e-15
PRK14025330 PRK14025, PRK14025, multifunctional 3-isopropylmal 2e-14
PRK07362474 PRK07362, PRK07362, isocitrate dehydrogenase; Vali 1e-13
PRK09222482 PRK09222, PRK09222, isocitrate dehydrogenase; Vali 8e-12
PRK08997334 PRK08997, PRK08997, isocitrate dehydrogenase; Prov 2e-11
TIGR02089352 TIGR02089, TTC, tartrate dehydrogenase 7e-08
PRK08194352 PRK08194, PRK08194, tartrate dehydrogenase; Provis 2e-06
PRK00772358 PRK00772, PRK00772, 3-isopropylmalate dehydrogenas 3e-06
>gnl|CDD|232856 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information 
 Score =  416 bits (1070), Expect = e-146
 Identities = 146/245 (59%), Positives = 188/245 (76%), Gaps = 1/245 (0%)

Query: 121 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEAS 180
           E +LYANV  C+SL G+ T ++DVD+V IRENTEGEYSG+EHE V GVV+S+K+IT + S
Sbjct: 88  ELDLYANVVHCKSLPGFKTRHEDVDIVIIRENTEGEYSGLEHESVPGVVESLKVITRDKS 147

Query: 181 SRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVC 240
            R+A +AFEYA+ N R KVTAVHKANIM+++DGLFL  CR+ A+++P++ FE   +D  C
Sbjct: 148 ERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREVAKEYPDITFESMIVDNTC 207

Query: 241 LNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFE-SVHGTAPDI 299
           + +V  P+Q+DV+VMPNLYG+ILS++ AGLVGG GL P  NIG + A+FE  V  T PDI
Sbjct: 208 MQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGGPGLVPGANIGRDYAVFEPGVRHTGPDI 267

Query: 300 AGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFTN 359
           AG+++ANPTAL+LS+VMML HL L  HAD IQKA L TI EGK RT DLGG A  S+FT 
Sbjct: 268 AGQNIANPTALILSSVMMLNHLGLKEHADRIQKAVLSTIAEGKNRTKDLGGTATTSDFTE 327

Query: 360 EICSK 364
            +  +
Sbjct: 328 AVIKR 332

Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the multimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Mitochondrial NAD-dependent isocitrate dehydrogenases (IDH) resemble prokaryotic NADP-dependent IDH and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent IDH. The mitochondrial NAD-dependent isocitrate dehydrogenase is believed to be an alpha(2)-beta-gamma heterotetramer. All subunits are homologous and found by this model. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1 [Energy metabolism, TCA cycle]. Length = 333
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|184462 PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|181606 PRK08997, PRK08997, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215065 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|236416 PRK09222, PRK09222, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information
>gnl|CDD|234832 PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233718 TIGR02089, TTC, tartrate dehydrogenase Back     alignment and domain information
>gnl|CDD|232853 TIGR00169, leuB, 3-isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|179579 PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|181281 PRK08194, PRK08194, tartrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|232862 TIGR00183, prok_nadp_idh, isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>gnl|CDD|180792 PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|235803 PRK06451, PRK06451, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|215188 PLN02329, PLN02329, 3-isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|180944 PRK07362, PRK07362, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|232856 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|215065 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|184462 PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|180944 PRK07362, PRK07362, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|236416 PRK09222, PRK09222, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|181606 PRK08997, PRK08997, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|233718 TIGR02089, TTC, tartrate dehydrogenase Back     alignment and domain information
>gnl|CDD|181281 PRK08194, PRK08194, tartrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|234832 PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 364
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
KOG0785|consensus365 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
KOG0784|consensus375 100.0
PRK08299402 isocitrate dehydrogenase; Validated 100.0
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 100.0
PTZ00435413 isocitrate dehydrogenase; Provisional 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PLN03065483 isocitrate dehydrogenase (NADP+); Provisional 100.0
KOG0786|consensus363 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
KOG1526|consensus422 100.0
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 97.34
KOG0784|consensus375 97.21
KOG0785|consensus365 96.81
PF03971735 IDH: Monomeric isocitrate dehydrogenase; InterPro: 96.72
TIGR00178741 monomer_idh isocitrate dehydrogenase, NADP-depende 96.47
PRK03371326 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 95.81
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 95.68
PLN00123360 isocitrate dehydrogenase (NAD+) 95.66
PRK08997334 isocitrate dehydrogenase; Provisional 95.66
PRK02746345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 95.62
PRK00232332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 95.48
PRK03946307 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 95.41
PRK05312336 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 95.41
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 95.4
PF04166298 PdxA: Pyridoxal phosphate biosynthetic protein Pdx 95.38
PRK03743332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 95.37
PLN00118372 isocitrate dehydrogenase (NAD+) 95.35
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 95.23
PRK01909329 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 95.22
TIGR00557320 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. 95.18
PRK08194352 tartrate dehydrogenase; Provisional 94.87
COG2838744 Icd Monomeric isocitrate dehydrogenase [Energy pro 94.73
TIGR02924473 ICDH_alpha isocitrate dehydrogenase. This family o 94.42
COG1995332 PdxA Pyridoxal phosphate biosynthesis protein [Coe 94.41
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 94.3
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 94.23
PRK09222482 isocitrate dehydrogenase; Validated 93.39
PRK06451412 isocitrate dehydrogenase; Validated 93.03
PRK07362474 isocitrate dehydrogenase; Validated 92.97
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 92.73
PLN02329409 3-isopropylmalate dehydrogenase 92.42
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 91.87
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 91.47
PRK07006409 isocitrate dehydrogenase; Reviewed 91.33
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-114  Score=828.77  Aligned_cols=320  Identities=40%  Similarity=0.650  Sum_probs=304.9

Q ss_pred             CCCCccccCCCCcCHHHHHHHHHHHHhhcC---CCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc---
Q psy8787          42 SQWSWRGLKVQGLGEFNLYANVRPCRSLEG---YPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE---  115 (364)
Q Consensus        42 ~~~~i~~i~GDGIGp~EV~a~~r~Vl~a~g---~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~---  115 (364)
                      +.|+|++|||||||| ||++++++||+++.   ++++|+++++|..+++++|.  ++|+++++.++++|++|||+++   
T Consensus         2 ~~~~IavipGDGIGp-Ev~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~--~lpeetl~~~~~~DaiL~Gavg~P~   78 (348)
T COG0473           2 KTYTIAVIPGDGIGP-EVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGE--PLPEETLESLKKADAILFGAVGGPK   78 (348)
T ss_pred             CceEEEEeCCCCCCH-HHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCC--CCCHHHHHHHHhCCEEEEcccCCCC
Confidence            578899999999999 99999999999987   79999999999999999997  9999999999999999999995   


Q ss_pred             --------cc----hhhhcccceeeeeeeccCCCCCCC-CCccEEEEccCCCccccCceee-eeCC-EEEEEEEecHHHH
Q psy8787         116 --------RG----ASVEFNLYANVRPCRSLEGYPTLY-DDVDVVTIRENTEGEYSGIEHE-IVDG-VVQSIKLITEEAS  180 (364)
Q Consensus       116 --------~g----LR~~ldlyanvRP~~~~pg~~~~~-~~iD~vIvREnteg~Y~g~~~~-~~~~-~a~~~~~~t~~~~  180 (364)
                              ++    |||.||||+|+||+|++||+++++ +++|+|||||||||+|+|.++. ..++ ++.++++|||+++
T Consensus        79 ~~~~~~~~~~~ll~lRk~l~lyANlRP~k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~eva~~~~~~Tr~~~  158 (348)
T COG0473          79 WDPLPRPERGLLLALRKELDLYANLRPAKSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGGEVAIDTKVITRKGS  158 (348)
T ss_pred             CCCCCCcccchHHHHHHhcCceeeeeecccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCCeEEEEEEeccHHHH
Confidence                    11    999999999999999999999887 6899999999999999999884 3444 8999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcc
Q psy8787         181 SRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYG  260 (364)
Q Consensus       181 eriar~Af~~A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~G  260 (364)
                      |||+|+|||+|++|++||||+|||+|||+.|++||+++|+|++++||+|+++|+|||+++||||++|++||||||+||||
T Consensus       159 eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFG  238 (348)
T COG0473         159 ERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFG  238 (348)
T ss_pred             HHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhhcCCCcchhHHhHHHHHHHHhhCccccCEEEEccchh
Confidence            99999999999999889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhccCCCCcccccccCCC--ceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q psy8787         261 DILSDMCAGLVGGLGLTPSGNIGLN--GALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTI  338 (364)
Q Consensus       261 DIlSD~aa~l~G~lGl~psa~ig~~--~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~  338 (364)
                      |||||+||+|+|||||+||||+|++  .+||||+|||||||||||||||+|+|||++|||||+|..++|++|++||++++
T Consensus       239 DILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPDIAGkgiANPiA~IlS~aMML~~~g~~~~A~~Ie~Av~~vl  318 (348)
T COG0473         239 DILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPDIAGKGIANPIATILSAAMMLRHLGEKEAADAIENAVEKVL  318 (348)
T ss_pred             HHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCcccccCCCccChHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            9999999999999999999999997  79999999999999999999999999999999999999999999999999999


Q ss_pred             HcCccccCCCCCCCCHHHHHHHHHhC
Q psy8787         339 KEGKYRTGDLGGKAKCSEFTNEICSK  364 (364)
Q Consensus       339 ~~g~~~T~Dlgg~~~T~e~~~av~~~  364 (364)
                      +++..+|+||||+++|.||+|+|+++
T Consensus       319 ~~~g~~T~Dlgg~~~T~e~~d~I~~~  344 (348)
T COG0473         319 AEGGIRTPDLGGNATTSEVGDAIAKA  344 (348)
T ss_pred             HcCCCCCcccCCCccHHHHHHHHHHH
Confidence            96435899999999999999999873

>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>KOG0785|consensus Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>KOG0784|consensus Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>KOG0786|consensus Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>KOG1526|consensus Back     alignment and domain information
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0784|consensus Back     alignment and domain information
>KOG0785|consensus Back     alignment and domain information
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1 Back     alignment and domain information
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type Back     alignment and domain information
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
3blw_B354 Yeast Isocitrate Dehydrogenase With Citrate And Amp 3e-75
3blv_B354 Yeast Isocitrate Dehydrogenase With Citrate Bound I 2e-69
3blw_A349 Yeast Isocitrate Dehydrogenase With Citrate And Amp 7e-62
3blv_A354 Yeast Isocitrate Dehydrogenase With Citrate Bound I 8e-59
2d1c_A 496 Crystal Structure Of Tt0538 Protein From Thermus Th 4e-58
1wpw_A336 Crystal Structure Of Ipmdh From Sulfolobus Tokodaii 4e-55
3asj_A334 Crystal Structure Of Homoisocitrate Dehydrogenase I 1e-51
1x0l_A333 Crystal Structure Of Tetrameric Homoisocitrate Dehy 1e-51
3ah3_A334 Crystal Structure Of Lr5-1, 3-Isopropylmalate Dehyd 2e-50
3ty3_A366 Crystal Structure Of Homoisocitrate Dehydrogenase F 3e-47
1gc8_A345 The Crystal Structure Of Thermus Thermophilus 3-Iso 5e-39
1xac_A345 Chimera Isopropylmalate Dehydrogenase Between Bacil 1e-38
1dr0_A346 Structure Of Modified 3-isopropylmalate Dehydrogena 1e-38
1dpz_A349 Stucture Of Modified 3-Isopropylmalate Dehydrogenas 2e-38
1g2u_A345 The Structure Of The Mutant, A172v, Of 3-Isopropylm 2e-38
1osj_A345 Structure Of 3-isopropylmalate Dehydrogenase Length 2e-38
1idm_A343 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chime 2e-38
1osi_A345 Structure Of 3-Isopropylmalate Dehydrogenase Length 2e-38
2y3z_A359 Structure Of Isopropylmalate Dehydrogenase From The 2e-38
1ipd_A345 Three-Dimensional Structure Of A Highly Thermostabl 2e-38
1dr8_A344 Structure Of Modified 3-Isopropylmalate Dehydrogena 2e-38
1wal_A345 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M21 2e-38
1gc9_A345 The Crystal Structure Of Thermus Thermophilus 3-Iso 3e-38
3u1h_A390 Crystal Structure Of Ipmdh From The Last Common Anc 3e-38
1cnz_A363 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmon 3e-37
1w0d_A337 The High Resolution Structure Of Mycobacterium Tube 8e-37
1iso_A416 Isocitrate Dehydrogenase: Structure Of An Engineere 9e-37
3fmx_X364 Crystal Structure Of Tartrate Dehydrogenase From Ps 3e-36
1vlc_A366 Crystal Structure Of 3-isopropylmalate Dehydrogenas 4e-36
2dht_A409 Crystal Structure Of Isocitrate Dehydrogenase From 4e-36
1cm7_A363 3-Isopropylmalate Dehydrogenase From Escherichia Co 1e-35
1a05_A358 Crystal Structure Of The Complex Of 3-Isopropylmala 2e-35
2iv0_A412 Thermal Stability Of Isocitrate Dehydrogenase From 3e-35
1v5b_A366 The Structure Of The Mutant, S225a And E251l, Of 3- 9e-35
3flk_A364 Crystal Structure Of Tartrate Dehydrogenase From Ps 2e-34
1hj6_A416 Isocitrate Dehydrogenase S113e Mutant Complexed Wit 4e-34
4ajb_A416 3d Structure Of E. Coli Isocitrate Dehydrogenase K1 4e-34
1bl5_A414 Isocitrate Dehydrogenase From E. Coli Single Turnov 4e-34
1p8f_A416 A Four Location Model To Explain The Stereospecific 4e-34
2ayq_A366 3-Isopropylmalate Dehydrogenase From The Moderate F 4e-34
1grp_A416 Regulatory And Catalytic Mechanisms In Escherichia 4e-34
6icd_A416 Regulation Of An Enzyme By Phosphorylation At The A 4e-34
4icd_A416 Regulation Of Isocitrate Dehydrogenase By Phosphory 4e-34
1v53_A366 The Crystal Structure Of 3-Isopropylmalate Dehydrog 4e-34
1gro_A416 Regulatory And Catalytic Mechanisms In Escherichia 4e-34
1cw7_A416 Low Temperature Structure Of Wild-Type Idh Complexe 5e-34
1idd_A416 Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme Le 9e-34
3dms_A427 1.65a Crystal Structure Of Isocitrate Dehydrogenase 2e-33
1cw1_A416 Crystal Structure Of Isocitrate Dehydrogenase Mutan 2e-33
1hqs_A423 Crystal Structure Of Isocitrate Dehydrogenase From 3e-33
3vkz_A375 3-Isopropylmalate Dehydrogenase From Shewanella One 4e-33
1v94_A435 Crystal Structure Of Isocitrate Dehydrogenase From 3e-32
3r8w_A405 Structure Of 3-Isopropylmalate Dehydrogenase Isofor 1e-31
2d4v_A429 Crystal Structure Of Nad Dependent Isocitrate Dehyd 4e-31
3vml_A375 Chimera 3-Isopropylmalate Dehydrogenase Between She 4e-30
3vmk_A375 3-Isopropylmalate Dehydrogenase From Shewanella Ben 3e-29
4iwh_A363 Crystal Structure Of A 3-isopropylmalate Dehydrogen 7e-29
3udu_A361 Crystal Structure Of Putative 3-Isopropylmalate Deh 8e-24
3udo_A361 Crystal Structure Of Putative Isopropylamlate Dehyd 2e-22
1zor_A399 Isocitrate Dehydrogenase From The Hyperthermophile 6e-04
1lwd_A413 Crystal Structure Of Nadp-Dependent Isocitrate Dehy 6e-04
2qfv_A427 Crystal Structure Of Saccharomyces Cerevesiae Mitoc 8e-04
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound In The Regulatory Subunits Length = 354 Back     alignment and structure 
Iteration: 1

 Score =  278 bits (711), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 137/247 (55%), Positives = 178/247 (72%), Gaps = 4/247 (1%)
Query: 122 FNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASS 181
           F L+ANVRP +S+EG+ T Y++VD+V IRENTEGEYSGIEH +  GVVQSIKLIT +AS 
Sbjct: 107 FGLFANVRPAKSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASE 166
Query: 182 RVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCL 241
           RV  +AFEYA+   R +V  VHK+ I R++DGLF+   ++ ++++P++  E + +D   L
Sbjct: 167 RVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVL 226
Query: 242 NMVQDPTQYD--VLVMPNLYGDILSDMCAGL-VGGLGLTPSGNIGLNGALFESVHGTAPD 298
            +V +P+ Y   V V PNLYGDILSD+ +GL  G LGLTPS NIG   ++FE+VHG+APD
Sbjct: 227 KVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHKISIFEAVHGSAPD 286
Query: 299 IAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEG-KYRTGDLGGKAKCSEF 357
           IAG+D ANPTALLLS+VMML H+ L  HAD IQ A L TI  G + RTGDL G A  S F
Sbjct: 287 IAGQDKANPTALLLSSVMMLNHMGLTNHADQIQNAVLSTIASGPENRTGDLAGTATTSSF 346
Query: 358 TNEICSK 364
           T  +  +
Sbjct: 347 TEAVIKR 353
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound In The Regulatory Subunits Length = 349 Back     alignment and structure
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus Thermophilus Hb8 Length = 496 Back     alignment and structure
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii Length = 336 Back     alignment and structure
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In Complex With A Designed Inhibitor Length = 334 Back     alignment and structure
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate Dehydrogenase From An Extreme Thermophile, Thermus Thermophilus Length = 333 Back     alignment and structure
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate Dehydrogenase Created By Directed Evolution Length = 334 Back     alignment and structure
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine Length = 366 Back     alignment and structure
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-Isopropylmalate Dehydrogenase Mutated At 172th From Ala To Phe Length = 345 Back     alignment and structure
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus Subtilis (M) And Thermus Thermophilus (T) From N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated At S82r. Low Temperature (100k) Structure. Length = 345 Back     alignment and structure
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At The C- Terminus, Hd708 Length = 346 Back     alignment and structure
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At The C- Terminus, Hd711 Length = 349 Back     alignment and structure
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate Dehydrogenase From Thermus Thermophilus Hb8 : Its Thermostability And Structure Length = 345 Back     alignment and structure
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase Length = 345 Back     alignment and structure
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera Length = 343 Back     alignment and structure
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Length = 345 Back     alignment and structure
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus Thermophilus - Apo Enzyme Length = 359 Back     alignment and structure
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus Thermophilus At 2.2 Angstroms Resolution Length = 345 Back     alignment and structure
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At The C- Terminus, Hd177 Length = 344 Back     alignment and structure
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from Thermus Thermophilus Length = 345 Back     alignment and structure
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-Isopropylmalate Dehydrogenase Mutated At 172th From Ala To Gly Length = 345 Back     alignment and structure
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor Of Bacillus Length = 390 Back     alignment and structure
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella Typhimurium Length = 363 Back     alignment and structure
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium Tuberculosis Leub (Rv2995c) Length = 337 Back     alignment and structure
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered Nadp+--> Nad+ Specificity-Reversal Mutant Length = 416 Back     alignment and structure
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase (tm0556) From Thermotoga Maritima At 1.90 A Resolution Length = 366 Back     alignment and structure
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Sulfolobus Tokodaii Strain7 Length = 409 Back     alignment and structure
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli Length = 363 Back     alignment and structure
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate Dehydrogenase From Thiobacillus Ferrooxidans With 3- Isopropylmalate Length = 358 Back     alignment and structure
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From Archaeoglobus Fulgidus Studied By Crystal Structure Analysis And Engineering Of Chimers Length = 412 Back     alignment and structure
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3- Isopropylmalate Dehydrogenase From Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From Pseudomonas Complex With Nadh, Oxalate And Metal Ion Length = 364 Back     alignment and structure
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled) Length = 416 Back     alignment and structure
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m Mutant In Complex With Isocitrate, Magnesium(Ii) And Thionadp Length = 416 Back     alignment and structure
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue Structure Of Rate-limited Product Complex, 10 Msec Time Resolution Length = 414 Back     alignment and structure
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of Proteins. Length = 416 Back     alignment and structure
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate Facultative Thermophile, Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli Isocitrate Dehydrogenase: Multiple Roles For N115 Length = 416 Back     alignment and structure
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active Site Length = 416 Back     alignment and structure
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation Involves No Long-Range Conformational Change In The Free Enzyme Length = 416 Back     alignment and structure
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase From Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli Isocitrate Dehydrogenase: Multiple Roles For N115 Length = 416 Back     alignment and structure
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With Mg- Isocitrate Length = 416 Back     alignment and structure
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme Length = 416 Back     alignment and structure
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From Burkholderia Pseudomallei Length = 427 Back     alignment and structure
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m Bound To Isocitrate And Mn2+ Length = 416 Back     alignment and structure
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Bacillus Subtilis Length = 423 Back     alignment and structure
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 At Atmospheric Pressure Length = 375 Back     alignment and structure
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Aeropyrum Pernix Length = 435 Back     alignment and structure
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2 From Arabidopsis Thaliana At 2.2 Angstrom Resolution Length = 405 Back     alignment and structure
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate Dehydrogenase From Acidithiobacillus Thiooxidans Length = 429 Back     alignment and structure
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O Length = 375 Back     alignment and structure
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica Db21 Mt-2 Length = 375 Back     alignment and structure
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase From Burkholderia Pseudomallei Length = 363 Back     alignment and structure
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate Dehydrogenase From Campylobacter Jejuni Length = 361 Back     alignment and structure
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate Dehydrogenase From Campylobacter Jejuni Length = 361 Back     alignment and structure
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile Thermotoga Maritima Length = 399 Back     alignment and structure
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate Dehydrogenase From Porcine Heart Mitochondria Length = 413 Back     alignment and structure
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 1e-163
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 1e-25
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 1e-163
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 2e-25
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 1e-158
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 2e-24
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 1e-158
2d1c_A496 Isocitrate dehydrogenase; structural genomics, NPP 6e-23
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 1e-154
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 7e-22
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 1e-150
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 2e-20
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 1e-144
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 1e-141
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 1e-139
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 1e-136
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 1e-124
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 1e-115
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 6e-99
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 2e-11
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 2e-79
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 5e-10
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 2e-66
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 2e-65
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 1e-64
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 2e-64
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 1e-63
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 1e-63
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 2e-63
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 4e-63
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
 Score =  460 bits (1185), Expect = e-163
 Identities = 114/246 (46%), Positives = 164/246 (66%), Gaps = 2/246 (0%)

Query: 121 EFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEAS 180
           + ++YANV   +SL+G  T   D+D++ IRENTEGE+SG+EHE V GVV+S+K++T   +
Sbjct: 100 QLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKT 159

Query: 181 SRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEK-FPEVKFEEKYLDTV 239
            R+A FAF++AK  NR  VTAVHKANIM++ DGLF     +  +K +P++      +D  
Sbjct: 160 ERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNA 219

Query: 240 CLNMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNGALFES-VHGTAPD 298
            +  V  P Q+DVLV P++YG IL ++ A L+GG GL    N G + A+FE        D
Sbjct: 220 SMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRDYAVFEPGSRHVGLD 279

Query: 299 IAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGGKAKCSEFT 358
           I G+++ANPTA++LS+ +ML HL LN +A  I KA  +TI EGK+ T D+GG +  ++FT
Sbjct: 280 IKGQNVANPTAMILSSTLMLNHLGLNEYATRISKAVHETIAEGKHTTRDIGGSSSTTDFT 339

Query: 359 NEICSK 364
           NEI +K
Sbjct: 340 NEIINK 345
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Length = 364 Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Length = 364 Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Length = 337 Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Length = 337 Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Length = 359 Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} PDB: 3udo_A Length = 361 Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Length = 358 Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Length = 366 Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Length = 363 Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Length = 405 Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Length = 390 Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Length = 375 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query364
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
3lxy_A334 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA 97.2
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 96.87
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 96.86
2hi1_A330 4-hydroxythreonine-4-phosphate dehydrogenase 2; py 95.88
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 95.8
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 95.39
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 94.97
4aty_A349 Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; o 94.88
1yxo_A328 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA 94.76
3tsn_A367 4-hydroxythreonine-4-phosphate dehydrogenase; stru 93.9
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 92.89
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 92.89
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 92.62
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 92.59
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 92.56
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 92.09
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 90.47
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 88.91
1vi1_A345 Fatty acid/phospholipid synthesis protein PLSX; st 88.4
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 88.35
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 87.9
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 86.82
1u7n_A336 Fatty acid/phospholipid synthesis protein PLSX; st 86.29
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 86.04
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 85.62
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 85.28
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 84.54
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 84.36
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 84.16
2d1c_A496 Isocitrate dehydrogenase; structural genomics, NPP 83.36
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 81.44
2af4_C333 Phosphate acetyltransferase; PTA dimer with one CO 80.05
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
Probab=100.00  E-value=1.9e-110  Score=814.02  Aligned_cols=315  Identities=37%  Similarity=0.565  Sum_probs=304.8

Q ss_pred             CCccccCCCCcCHHHHHHHHHHHHhhcCCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccc--------
Q psy8787          44 WSWRGLKVQGLGEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSE--------  115 (364)
Q Consensus        44 ~~i~~i~GDGIGp~EV~a~~r~Vl~a~g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~--------  115 (364)
                      ++|++|||||||| ||++++++||++++++++|+++++|...++++|+  ++|++++++++++|++||||++        
T Consensus         2 ~~I~vipGDGIGp-Ev~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~--~lp~~tl~~~~~~da~l~Gav~~P~~~~~~   78 (333)
T 1x0l_A            2 YRICLIEGDGIGH-EVIPAARRVLEATGLPLEFVEAEAGWETFERRGT--SVPEETVEKILSCHATLFGAATSPTRKVPG   78 (333)
T ss_dssp             EEEEEEEESTTHH-HHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSS--SSCHHHHHHHHTSSEEEEEECCCCSSCCTT
T ss_pred             cEEEEECCCCcCH-HHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCC--cCcHHHHHHHHHCCEEEECCccCCCCCCcC
Confidence            5789999999999 9999999999999999999999999988888997  8999999999999999999994        


Q ss_pred             -cc----hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceeeeeCCEEEEEEEecHHHHHHHHHHHHHH
Q psy8787         116 -RG----ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEY  190 (364)
Q Consensus       116 -~g----LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~~t~~~~eriar~Af~~  190 (364)
                       ++    ||+.||||+|+||||++| +++|++++|+|||||||||+|+|.+++ .++++.+++++||++++||+|+||+|
T Consensus        79 ~~s~~l~lR~~ldlyan~RP~~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~-~~~~a~~~~~~T~~~~eRiar~AF~~  156 (333)
T 1x0l_A           79 FFGAIRYLRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVRENTEGLYVEQERR-YLDVAIADAVISKKASERIGRAALRI  156 (333)
T ss_dssp             CCCHHHHHHHHTTCCEEEEEEECCS-STTCCSSCEEEEEEECGGGTCCCCEEE-ETTEEEEEEEEEHHHHHHHHHHHHHH
T ss_pred             ccChhHHHHHHcCCEEEEEEEeecc-CCCCCCCCCEEEEecCccceecccccc-CCCeEEEEEEecHHHHHHHHHHHHHH
Confidence             11    999999999999999999 999999999999999999999999887 67899999999999999999999999


Q ss_pred             HHhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhc
Q psy8787         191 AKTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGL  270 (364)
Q Consensus       191 A~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l  270 (364)
                      |++|+|||||+|||+|||+.|||||+++|+|++++||+|+++|++||++|||||++|++||||||+|||||||||++|++
T Consensus       157 A~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva~eyp~I~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l  236 (333)
T 1x0l_A          157 AEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGL  236 (333)
T ss_dssp             HHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHH
T ss_pred             HHhcCCCeEEEEecCccchhhhHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhh
Confidence            99998889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCccccCCCCC
Q psy8787         271 VGGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGKYRTGDLGG  350 (364)
Q Consensus       271 ~G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~~~~a~~i~~Av~~~~~~g~~~T~Dlgg  350 (364)
                      +||+||+||+|+|++++||||+|||||||||||+|||+|+|||++|||||||++++|++|++||.+++++| ++|+||||
T Consensus       237 ~GslGl~psanig~~~a~fEp~HGSAPdiaGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g-~~T~DlgG  315 (333)
T 1x0l_A          237 VGGLGLAPSGNIGDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDLVLERG-PRTPDLGG  315 (333)
T ss_dssp             TTCSTTCEEEEECSSCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-CCCGGGTC
T ss_pred             cCCcccceeeEECCCceEEeCCCCChhhhcCCCCcCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcC-CccCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 58999999


Q ss_pred             CCCHHHHHHHHHhC
Q psy8787         351 KAKCSEFTNEICSK  364 (364)
Q Consensus       351 ~~~T~e~~~av~~~  364 (364)
                      ++||+||+|+|+++
T Consensus       316 ~~~T~e~~daV~~~  329 (333)
T 1x0l_A          316 DATTEAFTEAVVEA  329 (333)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999999863
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Back     alignment and structure
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium} Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400} Back     alignment and structure
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa} Back     alignment and structure
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp} Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 364
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 5e-77
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 8e-75
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 4e-72
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 2e-08
d1g2ua_345 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 4e-68
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 7e-67
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 3e-05
d1a05a_357 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 2e-65
d1v53a1356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 2e-61
d1v53a1356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 4e-07
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 4e-59
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 1e-06
d1w0da_337 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 3e-58
d1lwda_413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 4e-51
d1t0la_414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 2e-50
d1ptma_329 c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehyd 5e-04
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: Isocitrate dehydrogenase, ICDH
species: Bacillus subtilis [TaxId: 1423]

 Score =  241 bits (616), Expect = 5e-77
 Identities = 94/310 (30%), Positives = 137/310 (44%), Gaps = 66/310 (21%)

Query: 121 EFNLYANVRPCRSLEGYPT---LYDDVDVVTIRENTEGEYSGIEHEIVDGVVQ------- 170
           E +L+  +RP R   G P+     +D D+V  RENTE  Y+GIE+      VQ       
Sbjct: 112 ELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFLQ 171

Query: 171 ----------------SIKLITEEASSRVAEFAFEYAKTNNRSKVTAVHKANIMRMSDGL 214
                            IK ++EE +SR+   A +YA  + R  VT VHK NIM+ ++G 
Sbjct: 172 NELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGA 231

Query: 215 FLRCCRD---------------------------------AAEKFPEVKFEEKYLDTVCL 241
           F     +                                  AE   ++  ++   D    
Sbjct: 232 FKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQ 291

Query: 242 NMVQDPTQYDVLVMPNLYGDILSDMCAGLVGGLGLTPSGNIGLNG--ALFESVHGTAPDI 299
            ++  P ++DV+   NL GD +SD  A  VGG+G+ P  NI      A+FE+ HGTAP  
Sbjct: 292 QILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKY 351

Query: 300 AGKDLANPTALLLSAVMMLRHLDLNTHADVIQKAALDTIKEGK-----YRTGDLGGKAKC 354
           AG D  NP++++LS V++L HL  N  AD++ K+   TI          R  D   + KC
Sbjct: 352 AGLDKVNPSSVILSGVLLLEHLGWNEAADLVIKSMEKTIASKVVTYDFARLMDGATEVKC 411

Query: 355 SEFTNEICSK 364
           SEF  E+   
Sbjct: 412 SEFGEELIKN 421
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Length = 345 Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Length = 357 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Length = 337 Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query364
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1itwa_740 Monomeric isocitrate dehydrogenase {Azotobacter vi 98.18
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 97.18
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 90.38
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 89.34
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 89.3
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 88.62
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 88.58
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 87.17
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 85.67
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 84.83
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=100.00  E-value=1e-102  Score=762.91  Aligned_cols=316  Identities=37%  Similarity=0.590  Sum_probs=303.5

Q ss_pred             CCCccccCCCCcCHHHHHHHHHHHHhhc----CCCceeEEEEeeeeeecCCCCccccchhHHHHhhhcCEEEEcccccc-
Q psy8787          43 QWSWRGLKVQGLGEFNLYANVRPCRSLE----GYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVCNSNYATKWFSERG-  117 (364)
Q Consensus        43 ~~~i~~i~GDGIGp~EV~a~~r~Vl~a~----g~~i~~~~vdig~~re~~~G~Y~~lp~etl~~ik~~daiLkGav~~g-  117 (364)
                      +|+|++|||||||| ||++++++|++++    +++++|+++++|..++.++|.  .+|+++++.++++|++||||++.. 
T Consensus         1 ~y~I~vipGDGIGp-Ev~~~~~~Vl~a~~~~~~~~ie~~~~~~G~~~~~~~G~--~lp~~~~~~~~~~da~l~G~~~~~~   77 (336)
T d1wpwa_           1 GFTVALIQGDGIGP-EIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGE--ALPKDSLKIIDKADIILKGPVGESA   77 (336)
T ss_dssp             CEEEEEECCSTTHH-HHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSS--SSCHHHHHHHHTCSEEEECCCCTTH
T ss_pred             CCEEEEECCCcchH-HHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHHhCC--cCCHHHHHHHHhcCeeEeccccccc
Confidence            48899999999999 9999999999875    689999999999999999997  899999999999999999999632 


Q ss_pred             ------hhhhcccceeeeeeeccCCCCCCCCCccEEEEccCCCccccCceeeeeCCEEEEEEEecHHHHHHHHHHHHHHH
Q psy8787         118 ------ASVEFNLYANVRPCRSLEGYPTLYDDVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASSRVAEFAFEYA  191 (364)
Q Consensus       118 ------LR~~ldlyanvRP~~~~pg~~~~~~~iD~vIvREnteg~Y~g~~~~~~~~~a~~~~~~t~~~~eriar~Af~~A  191 (364)
                            ||+.||||+|+||||++||++++++++|+|||||||||+|+|.++...++++.+++++||++++||+|+||+||
T Consensus        78 ~~~~l~LR~~ldlyanvRP~~~~pg~~~~~~~iDivIvREnteG~Y~G~~~~~~~~~~~~~~~~tr~~~eRI~r~AFe~A  157 (336)
T d1wpwa_          78 ADVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFA  157 (336)
T ss_dssp             HHHHHHHHHTTTCCEEEEEEECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             ccchHHHhhhccceeeeeeeeccCCCccccCCccEEEEehhhcCcccCcccccccccceeEEEEeeechhhhhhhhHHHH
Confidence                  99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCceEEEEeCcccccccHHHHHHHHHHhhcCCCeeEeeEeHHHHHHHHhcCCCCccEEEeCCCcchhhhhhhhhcc
Q psy8787         192 KTNNRSKVTAVHKANIMRMSDGLFLRCCRDAAEKFPEVKFEEKYLDTVCLNMVQDPTQYDVLVMPNLYGDILSDMCAGLV  271 (364)
Q Consensus       192 ~~~~~~~Vt~v~KaNv~~~~~~lf~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIlSD~aa~l~  271 (364)
                      ++| ++|||++||+|+|+.++++|+++++++  .||+|++++++||+++|+|+++|++||||||+|||||||||++++++
T Consensus       158 ~~r-~~kvt~v~Kanvl~~~~g~f~~~~~~v--~~~~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSDl~a~l~  234 (336)
T d1wpwa_         158 LRR-RKKVTCVHKANVMRITDGLFAEACRSV--LKGKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIA  234 (336)
T ss_dssp             HTT-TSEEEEEECTTTCTTHHHHHHHHHHHH--HTTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHH
T ss_pred             Hhc-CCeEEEEeccceeeeecccceeEEEEe--eeeeEEEeehhhhhhHHhhccCCccceEEEehhHHHHhhhHHHHHhh
Confidence            987 589999999999999999999999998  58999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccccCCCceeEeeccCCCCCccCCCCCChhHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHcCccc
Q psy8787         272 GGLGLTPSGNIGLNGALFESVHGTAPDIAGKDLANPTALLLSAVMMLRHLDL-------NTHADVIQKAALDTIKEGKYR  344 (364)
Q Consensus       272 G~lGl~psa~ig~~~~~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~lg~-------~~~a~~i~~Av~~~~~~g~~~  344 (364)
                      ||+||+||+|+|+++++|||+|||||||||||+|||+|||||++|||||||.       .++|++|++||.+++++|+++
T Consensus       235 G~lGl~ps~nig~~~a~fEp~HGsApdiaGk~iaNP~A~Ils~ammL~~lg~~~~~~~~~~~a~~ie~Av~~v~~~~~~~  314 (336)
T d1wpwa_         235 GSLGIAPSANIGDKKALFEPVHGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKAL  314 (336)
T ss_dssp             TCGGGCEEEEECSSCEEEEESSCCCTTTTTSSCCCTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCceeccccccCCCceecccccccccccCCCCCCChHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHhcCCcc
Confidence            9999999999999999999999999999999999999999999999999974       578999999999999988789


Q ss_pred             cCCCCCCCCHHHHHHHHHhC
Q psy8787         345 TGDLGGKAKCSEFTNEICSK  364 (364)
Q Consensus       345 T~Dlgg~~~T~e~~~av~~~  364 (364)
                      |+||||++||+||+|+|+++
T Consensus       315 T~DlGG~~tT~e~~davi~~  334 (336)
T d1wpwa_         315 TPDVGGNATTDDLINEIYNK  334 (336)
T ss_dssp             CGGGTCCCCHHHHHHHHHHS
T ss_pred             CcccCCCccHHHHHHHHHHh
Confidence            99999999999999999985
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure