Psyllid ID: psy8796

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530------
MVDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEKPIEEFADAGGTKDIEFTVTTLNCDKIATPDSDTSHSIGGSITPSGSTSLHHNRTTRFASLRRNKQLGKSVRSKFTRSFYHSNNSHPKDKDRELSNLSTSRSDDIHNKNEENFGRMFPTMSYFTVWGTYLHL
cccccccHHHHcccccEEEEEEEEEEEcccccEEEEEEEEEcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHcccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccc
cccccccccccHccccEEEEEEEEEEEcccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHcccEEEEEcccccccHHHHHHHHHHHHHcccccEccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcHccccccHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHccccccccEEEEEEEccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHcccccccccccHHHHHHHccccHccccccHHHcccccccccEEEEEHHHccc
mvdprfnneidrrtgyttnsilcvpinsyegeVIGVAQIInktdgtssftdRDIEVALECLSyhatasgeDTRKLIKDtipsaqvynlysftfidfdlsdmdTCRATIRMFLECDlvkqfhipyDVLCRWVLSvkknyrpvkyhnWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLchdldhrgtnnafqtktesplailyttstmehhhFDQCVMILNsdgnnifqalsphdYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMtacdvgaiakpWEVQHKMAKLVAdeffdqgdleklqlntqpvammdrerkdelpqmqvgFIDVICLplykvmsdtfpwiqplydgtyenRKHWQDLAEKVEMGLtwidhdkiekpieefadaggtkdieftvttlncdkiatpdsdtshsiggsitpsgstslhhnrttrfaSLRRNKQLGKSVRSKFTRsfyhsnnshpkdkdrelsnlstsrsddihnkneenfgrmfptmsyfTVWGTYLHL
mvdprfnneidrrtgyttnsilcVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHatasgedtrKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGtnnafqtktesPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEKPIEEFADAGGTKDIEFTVTTLNCDKIatpdsdtshsiggsitpsgstslhhnrttrfaslrrnkqlgksvrskftrsfyhsnnshpkdkdrelsnlstsrsddihnkneenfgrmfptmSYFTVWGTYLHL
MVDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEKPIEEFADAGGTKDIEFTVTTLNCDKIATPDSDtshsiggsitpsgstsLHHNRTTRFASLRRNKQLGKSVRSKFTRSFYHSNNSHPKDKDRELSNLSTSRSDDIHNKNEENFGRMFPTMSYFTVWGTYLHL
************RTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQL*****************QMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEKPIEEFADAGGTKDIEFTVTTLNCDKI*************************************************************************************FGRMFPTMSYFTVWGTYL**
MVDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQ***************************************************************************************************************************************FPTMSYFTVWGTYLHL
MVDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEKPIEEFADAGGTKDIEFTVTTLNCDKIATP********GGSITPSGSTSLHHNRTTRFASLRRNKQLGKSVRSKFTRSFYHS******************RSDDIHNKNEENFGRMFPTMSYFTVWGTYLHL
****RFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLT*******************TKDIEFTVTTLNC************************************************************************************N*ENFGRMFPTMSYFTVWGTYLHL
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MVDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEKPIEEFADAGGTKDIEFTVTTLNCDKIATPDSDTSHSIGGSITPSGSTSLHHNRTTRFASLRRNKQLGKSVRSKFTRSFYHSNNSHPKDKDRELSNLSTSRSDDIHNKNEENFGRMFPTMSYFTVWGTYLHL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query536 2.2.26 [Sep-21-2011]
B4QZU11143 cGMP-specific 3',5'-cycli N/A N/A 0.910 0.426 0.677 0.0
Q9VFI91118 cGMP-specific 3',5'-cycli yes N/A 0.910 0.436 0.677 0.0
B3P3K21131 cGMP-specific 3',5'-cycli N/A N/A 0.910 0.431 0.677 0.0
B4PSS51149 cGMP-specific 3',5'-cycli N/A N/A 0.910 0.424 0.675 0.0
B4K9L41116 cGMP-specific 3',5'-cycli N/A N/A 0.912 0.438 0.675 0.0
B4LVU6893 cGMP-specific 3',5'-cycli N/A N/A 0.910 0.546 0.677 0.0
B3LVW51158 cGMP-specific 3',5'-cycli N/A N/A 0.914 0.423 0.673 0.0
Q298P41110 cGMP-specific 3',5'-cycli yes N/A 0.917 0.443 0.675 0.0
B4NAL61127 cGMP-specific 3',5'-cycli N/A N/A 0.908 0.432 0.667 0.0
B4JXX21078 cGMP-specific 3',5'-cycli N/A N/A 0.936 0.465 0.667 0.0
>sp|B4QZU1|PDE6_DROSI cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila simulans GN=Pde6 PE=3 SV=1 Back     alignment and function desciption
 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/542 (67%), Positives = 421/542 (77%), Gaps = 54/542 (9%)

Query: 5    RFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDI---------- 54
            R  +EID     +T +ILC+PI + + +VIGVAQ+INK +G   FTD D           
Sbjct: 580  RAEDEID-----STQAILCMPIMNAQKKVIGVAQLINKANGV-PFTDSDASIFEAFAIFC 633

Query: 55   --------------------EVALECLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFI 94
                                +VALECLSYHATAS + T KL +D I  A+ YNLYSFTF 
Sbjct: 634  GLGIHNTQMYENACKLMAKQKVALECLSYHATASQDQTEKLTQDVIAEAESYNLYSFTFT 693

Query: 95   DFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQ 154
            DF+L D DTCRA +RMF++C+LV QF IPYDVLCRWVLSV+KNYRPVKYHNWRHALNVAQ
Sbjct: 694  DFELVDDDTCRAVLRMFMQCNLVSQFQIPYDVLCRWVLSVRKNYRPVKYHNWRHALNVAQ 753

Query: 155  TMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEH 214
            TMFAMLKTGKMERFM+DLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEH
Sbjct: 754  TMFAMLKTGKMERFMTDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEH 813

Query: 215  HHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGE 274
            HHFDQCVMILNS+GNNIFQALSP DYR VMK VE++ILSTDLAMYFKK+N F++LVENGE
Sbjct: 814  HHFDQCVMILNSEGNNIFQALSPEDYRSVMKTVESAILSTDLAMYFKKRNAFLELVENGE 873

Query: 275  FDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVA 334
            FDWQ EEKK LLCGMMMTACDV AIAKPWEVQHK+AKLVADEFFDQGDLEKLQLNTQPVA
Sbjct: 874  FDWQGEEKKDLLCGMMMTACDVSAIAKPWEVQHKVAKLVADEFFDQGDLEKLQLNTQPVA 933

Query: 335  MMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMG 394
            MMDRERKDELP+MQVGFIDVICLPLY+V+ DTFPWI PLY+GT ENR++WQDLAEKVEMG
Sbjct: 934  MMDRERKDELPKMQVGFIDVICLPLYRVLCDTFPWITPLYEGTLENRRNWQDLAEKVEMG 993

Query: 395  LTWIDHDKIEKPIEEFADAGG--TKDIEFTVTTLNCDKIATPDSDTSHSIGGSITPSGST 452
            LTWIDHD I+KP+EEFA       KDIEFTVTTLNC++ +   S+ SH      TP    
Sbjct: 994  LTWIDHDTIDKPVEEFAACADEEIKDIEFTVTTLNCNQQSQHGSEDSH------TP---- 1043

Query: 453  SLHHNRTTRFASLRRNKQLGKSVRSKFTRSFYHS-NNSHPKDKDRELSNLSTSRSDDIHN 511
               H R+    S+++   LGK+VRSK +++ Y+S + S PK     L  L +  S+D+ +
Sbjct: 1044 --EHQRSGSRLSMKKTGALGKAVRSKLSKTLYNSMDGSKPKTS---LKLLESHVSEDMDD 1098

Query: 512  KN 513
            K+
Sbjct: 1099 KS 1100
Has a role regulating cGMP transport in Malpighian tubule principal cells.
Drosophila simulans (taxid: 7240)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 3EC: 5
>sp|Q9VFI9|PDE6_DROME cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila melanogaster GN=Pde6 PE=1 SV=4 Back     alignment and function description
>sp|B3P3K2|PDE6_DROER cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila erecta GN=Pde6 PE=3 SV=1 Back     alignment and function description
>sp|B4PSS5|PDE6_DROYA cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila yakuba GN=Pde6 PE=3 SV=1 Back     alignment and function description
>sp|B4K9L4|PDE6_DROMO cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila mojavensis GN=Pde6 PE=3 SV=1 Back     alignment and function description
>sp|B4LVU6|PDE6_DROVI cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila virilis GN=Pde6 PE=3 SV=1 Back     alignment and function description
>sp|B3LVW5|PDE6_DROAN cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila ananassae GN=Pde6 PE=3 SV=1 Back     alignment and function description
>sp|Q298P4|PDE6_DROPS cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila pseudoobscura pseudoobscura GN=Pde6 PE=3 SV=3 Back     alignment and function description
>sp|B4NAL6|PDE6_DROWI cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila willistoni GN=Pde6 PE=3 SV=1 Back     alignment and function description
>sp|B4JXX2|PDE6_DROGR cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila grimshawi GN=Pde6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query536
328720843 997 PREDICTED: cGMP-specific 3',5'-cyclic ph 0.867 0.466 0.73 0.0
195570888 1143 GD20415 [Drosophila simulans] gi|2236356 0.910 0.426 0.677 0.0
281361762 1118 phosphodiesterase 6, isoform B [Drosophi 0.910 0.436 0.677 0.0
442619060 1124 phosphodiesterase 6, isoform C [Drosophi 0.910 0.434 0.677 0.0
194900778 1131 GG21262 [Drosophila erecta] gi|223635557 0.910 0.431 0.677 0.0
16183366 1018 GH27433p [Drosophila melanogaster] 0.910 0.479 0.677 0.0
195501590 1149 GE26445 [Drosophila yakuba] gi|223635607 0.910 0.424 0.675 0.0
195113315 1116 GI10668 [Drosophila mojavensis] gi|22363 0.912 0.438 0.675 0.0
195390751 893 GJ23019 [Drosophila virilis] gi|22363560 0.910 0.546 0.677 0.0
194740874 1158 GF17478 [Drosophila ananassae] gi|223635 0.914 0.423 0.673 0.0
>gi|328720843|ref|XP_003247143.1| PREDICTED: cGMP-specific 3',5'-cyclic phosphodiesterase-like isoform 2 [Acyrthosiphon pisum] gi|328720845|ref|XP_001945926.2| PREDICTED: cGMP-specific 3',5'-cyclic phosphodiesterase-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/500 (73%), Positives = 405/500 (81%), Gaps = 35/500 (7%)

Query: 20  SILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDI------------------------- 54
           SILC+PI + + +VIGVAQ+INK  G   FTD D+                         
Sbjct: 428 SILCMPILNGKKDVIGVAQLINKETGFP-FTDCDVATFEAFAIFCGLGIHNTQMYESACK 486

Query: 55  -----EVALECLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIR 109
                +VALECLSYHATAS +DT KL +D IPSA+ YNLYSF FIDFDLSD DTC+ATIR
Sbjct: 487 LMAKQKVALECLSYHATASVDDTIKLAQDKIPSAETYNLYSFKFIDFDLSDDDTCKATIR 546

Query: 110 MFLECDLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFM 169
           MFL+C+LV+QF IPY VLC+WVLSV+KNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFM
Sbjct: 547 MFLQCNLVQQFQIPYHVLCKWVLSVRKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFM 606

Query: 170 SDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGN 229
           SDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGN
Sbjct: 607 SDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGN 666

Query: 230 NIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGM 289
           NIFQALSP DYR VMKLVENSILSTDLAMYFKKKNRF+++VENGEFDWQSEEKK LLCG+
Sbjct: 667 NIFQALSPEDYRCVMKLVENSILSTDLAMYFKKKNRFMEVVENGEFDWQSEEKKALLCGI 726

Query: 290 MMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQV 349
           +MTACDV AIAKPWEVQHKMAKLVADEFFDQGDLEKLQLN QP+AMMDRE+KDELPQMQV
Sbjct: 727 LMTACDVSAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNQQPMAMMDREKKDELPQMQV 786

Query: 350 GFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEKPIEE 409
            FIDVICLPLYKV+ DTFPWI PLY+GT ENRKHW+DLAEKVEMGLTWIDHDKIE P+EE
Sbjct: 787 EFIDVICLPLYKVLCDTFPWITPLYEGTLENRKHWKDLAEKVEMGLTWIDHDKIEIPVEE 846

Query: 410 FADAGGTKDIEFTVTTLNCDKIATPDSDTSHSIGGSITPSGSTSLHHNRTTRFASLRRNK 469
           F     TKDIEFTVTTLN  + +T  S+T       +    S +LH N   +F+S R+  
Sbjct: 847 FFTHKSTKDIEFTVTTLNTTQNSTKKSNTK---SLDLNLDTSAALHRN-GAKFSSFRKKP 902

Query: 470 QLGKSVRSKFTRSFYHSNNS 489
              +S R++ +RS Y+S  S
Sbjct: 903 TSSRSFRNRVSRSLYNSTAS 922

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195570888|ref|XP_002103436.1| GD20415 [Drosophila simulans] gi|223635604|sp|B4QZU1.1|PDE6_DROSI RecName: Full=cGMP-specific 3',5'-cyclic phosphodiesterase; Flags: Precursor gi|194199363|gb|EDX12939.1| GD20415 [Drosophila simulans] Back     alignment and taxonomy information
>gi|281361762|ref|NP_650369.3| phosphodiesterase 6, isoform B [Drosophila melanogaster] gi|353526352|sp|Q9VFI9.4|PDE6_DROME RecName: Full=cGMP-specific 3',5'-cyclic phosphodiesterase; AltName: Full=DmPDE5/6; Short=DmPDE6; Flags: Precursor gi|272476975|gb|AAF55066.4| phosphodiesterase 6, isoform B [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|442619060|ref|NP_001262566.1| phosphodiesterase 6, isoform C [Drosophila melanogaster] gi|440217420|gb|AGB95947.1| phosphodiesterase 6, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|194900778|ref|XP_001979932.1| GG21262 [Drosophila erecta] gi|223635557|sp|B3P3K2.1|PDE6_DROER RecName: Full=cGMP-specific 3',5'-cyclic phosphodiesterase; Flags: Precursor gi|190651635|gb|EDV48890.1| GG21262 [Drosophila erecta] Back     alignment and taxonomy information
>gi|16183366|gb|AAL13699.1| GH27433p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195501590|ref|XP_002097859.1| GE26445 [Drosophila yakuba] gi|223635607|sp|B4PSS5.1|PDE6_DROYA RecName: Full=cGMP-specific 3',5'-cyclic phosphodiesterase; Flags: Precursor gi|194183960|gb|EDW97571.1| GE26445 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|195113315|ref|XP_002001213.1| GI10668 [Drosophila mojavensis] gi|223635559|sp|B4K9L4.1|PDE6_DROMO RecName: Full=cGMP-specific 3',5'-cyclic phosphodiesterase; Flags: Precursor gi|193917807|gb|EDW16674.1| GI10668 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195390751|ref|XP_002054031.1| GJ23019 [Drosophila virilis] gi|223635605|sp|B4LVU6.1|PDE6_DROVI RecName: Full=cGMP-specific 3',5'-cyclic phosphodiesterase; Flags: Precursor gi|194152117|gb|EDW67551.1| GJ23019 [Drosophila virilis] Back     alignment and taxonomy information
>gi|194740874|ref|XP_001952915.1| GF17478 [Drosophila ananassae] gi|223635556|sp|B3LVW5.1|PDE6_DROAN RecName: Full=cGMP-specific 3',5'-cyclic phosphodiesterase; Flags: Precursor gi|190625974|gb|EDV41498.1| GF17478 [Drosophila ananassae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query536
UNIPROTKB|B4JXX21078 Pde6 "cGMP-specific 3',5'-cycl 0.848 0.422 0.733 5.7e-202
UNIPROTKB|B4K9L41116 Pde6 "cGMP-specific 3',5'-cycl 0.832 0.399 0.733 9.2e-202
UNIPROTKB|B4LVU6893 Pde6 "cGMP-specific 3',5'-cycl 0.828 0.497 0.735 2.4e-201
UNIPROTKB|Q298P41110 Pde6 "cGMP-specific 3',5'-cycl 0.835 0.403 0.735 8.2e-201
FB|FBgn00382371118 Pde6 "Phosphodiesterase 6" [Dr 0.828 0.397 0.733 2.8e-200
UNIPROTKB|B4QZU11143 Pde6 "cGMP-specific 3',5'-cycl 0.828 0.388 0.733 2.8e-200
UNIPROTKB|B4PSS51149 Pde6 "cGMP-specific 3',5'-cycl 0.828 0.386 0.733 2.8e-200
UNIPROTKB|B3LVW51158 Pde6 "cGMP-specific 3',5'-cycl 0.832 0.385 0.733 4.5e-200
UNIPROTKB|B4NAL61127 Pde6 "cGMP-specific 3',5'-cycl 0.826 0.393 0.729 7.4e-200
UNIPROTKB|B4G4E51276 Pde6 "cGMP-specific 3',5'-cycl 0.503 0.211 0.654 2.1e-199
UNIPROTKB|B4JXX2 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila grimshawi (taxid:7222)] Back     alignment and assigned GO terms
 Score = 1784 (633.1 bits), Expect = 5.7e-202, Sum P(2) = 5.7e-202
 Identities = 339/462 (73%), Positives = 383/462 (82%)

Query:    55 EVALECLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLEC 114
             +VALECLSYHATAS + T KL +D I  A+ YNLYSFTF DFDL D DTCRA +RMF++C
Sbjct:   581 KVALECLSYHATASQDQTEKLTQDPIAEAESYNLYSFTFTDFDLVDDDTCRAVLRMFMQC 640

Query:   115 DLVKQFHIPYDVLCRWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEI 174
             +LV QFHIPYDVLCRWVLSV+KNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFM+DLEI
Sbjct:   641 NLVSQFHIPYDVLCRWVLSVRKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMTDLEI 700

Query:   175 LGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSDGNNIFQA 234
             LGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNS+GNNIFQA
Sbjct:   701 LGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSEGNNIFQA 760

Query:   235 LSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTAC 294
             LSP DYR VMK VE++ILSTDLAMYFKK+N F++LVENGEFDWQ EEKK LLCGMMMTAC
Sbjct:   761 LSPEDYRCVMKTVESAILSTDLAMYFKKRNAFLELVENGEFDWQGEEKKDLLCGMMMTAC 820

Query:   295 DVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDV 354
             DV AIAKPWEVQH++AKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELP+MQVGFIDV
Sbjct:   821 DVSAIAKPWEVQHRVAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPKMQVGFIDV 880

Query:   355 ICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGLTWIDHDKIEKPIEEFADAG 414
             ICLPLY+V+ DTFPWI PLY+GT ENR++WQDLAEKVEMGLTWIDHD I+KP+EEFA   
Sbjct:   881 ICLPLYRVLCDTFPWITPLYEGTLENRRNWQDLAEKVEMGLTWIDHDTIDKPVEEFAGCA 940

Query:   415 GT--KDIEFTVTTLNCDKIATPDSDXXXXXXXXXXXXXXXXLHHNRTTRFASLRRNKQLG 472
                 KDIEFTVTTLNC++ +   S                    +  +R  S+++   LG
Sbjct:   941 DEEIKDIEFTVTTLNCNQQSQSQSQSQSQSQHGGDDIHTPEHQRSSGSRL-SIKKTGALG 999

Query:   473 KSVRSKFTRSFYHS-NNSHPKDKDRELSNLSTSRSDDIHNKN 513
             K VRSK +++ Y+S + S PK     L  L +  S+D+ +K+
Sbjct:  1000 KVVRSKLSKTLYNSMDGSKPKTS---LKLLESHVSEDMDDKS 1038
GO:0016020 "membrane" evidence=ISS
GO:0046068 "cGMP metabolic process" evidence=ISS
GO:0047555 "3',5'-cyclic-GMP phosphodiesterase activity" evidence=ISS
UNIPROTKB|B4K9L4 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila mojavensis (taxid:7230)] Back     alignment and assigned GO terms
UNIPROTKB|B4LVU6 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila virilis (taxid:7244)] Back     alignment and assigned GO terms
UNIPROTKB|Q298P4 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
FB|FBgn0038237 Pde6 "Phosphodiesterase 6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|B4QZU1 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila simulans (taxid:7240)] Back     alignment and assigned GO terms
UNIPROTKB|B4PSS5 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila yakuba (taxid:7245)] Back     alignment and assigned GO terms
UNIPROTKB|B3LVW5 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila ananassae (taxid:7217)] Back     alignment and assigned GO terms
UNIPROTKB|B4NAL6 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila willistoni (taxid:7260)] Back     alignment and assigned GO terms
UNIPROTKB|B4G4E5 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila persimilis (taxid:7234)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q298P4PDE6_DROPS3, ., 1, ., 4, ., 3, 50.67520.91790.4432yesN/A
Q9VFI9PDE6_DROME3, ., 1, ., 4, ., 3, 50.67710.91040.4364yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.4.350.914
3rd Layer3.1.40.921

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
pfam00233237 pfam00233, PDEase_I, 3'5'-cyclic nucleotide phosph 2e-77
smart00471124 smart00471, HDc, Metal dependent phosphohydrolases 1e-13
cd00077145 cd00077, HDc, Metal dependent phosphohydrolases wi 3e-10
smart00065149 smart00065, GAF, Domain present in phytochromes an 3e-04
pfam01590143 pfam01590, GAF, GAF domain 4e-04
PRK02118436 PRK02118, PRK02118, V-type ATP synthase subunit B; 0.004
>gnl|CDD|109297 pfam00233, PDEase_I, 3'5'-cyclic nucleotide phosphodiesterase Back     alignment and domain information 
 Score =  243 bits (622), Expect = 2e-77
 Identities = 105/241 (43%), Positives = 150/241 (62%), Gaps = 6/241 (2%)

Query: 143 YHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESP 202
           YHNWRHA +V QT   +L T  +ER+++DLEIL LL A   HD+DHRGTNN+FQ  ++S 
Sbjct: 1   YHNWRHAADVTQTTHLLLLTLALERYLTDLEILALLFAAAIHDVDHRGTNNSFQINSKSE 60

Query: 203 LAILYTT-STMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFK 261
           LAILY   S +E+HH  Q   +L  +  NIFQ LS  D++ +  LV   IL+TD++++F+
Sbjct: 61  LAILYNDESVLENHHLAQAFKLLQDEECNIFQNLSKKDFQTLRDLVIEMILATDMSLHFQ 120

Query: 262 KKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQG 321
           K      +VE  +     + K  LL  ++M A D+    KPW++  + A+L+ +EFFDQG
Sbjct: 121 KLKDLKTMVEQKKRLDL-DHKILLLS-LLMHAADLSNPTKPWKLHRRWAELIMEEFFDQG 178

Query: 322 DLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTF-PWIQPLYDGTYEN 380
           DLE+ +L   P  M DR     +P+ QVGFID I  P++K+++D     IQPL D   +N
Sbjct: 179 DLER-ELGLPPSPMCDRT-SAYVPKSQVGFIDFIVEPIFKLLADVVEKDIQPLLDTIEDN 236

Query: 381 R 381
           R
Sbjct: 237 R 237

Length = 237
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|214500 smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>gnl|CDD|216590 pfam01590, GAF, GAF domain Back     alignment and domain information
>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 536
KOG3689|consensus707 100.0
PF00233237 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase 100.0
KOG3688|consensus554 100.0
KOG1229|consensus775 100.0
cd00077145 HDc Metal dependent phosphohydrolases with conserv 98.3
KOG3689|consensus707 97.86
PF01590154 GAF: GAF domain; InterPro: IPR003018 This domain i 97.66
PRK11061 748 fused phosphoenolpyruvate-protein phosphotransfera 97.4
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 97.23
TIGR01817534 nifA Nif-specific regulatory protein. This model r 97.2
PF13492129 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ 96.71
smart00471124 HDc Metal dependent phosphohydrolases with conserv 95.98
smart00065149 GAF Domain present in phytochromes and cGMP-specif 95.62
PRK15429686 formate hydrogenlyase transcriptional activator Fh 95.57
PRK15429686 formate hydrogenlyase transcriptional activator Fh 94.76
PRK05022509 anaerobic nitric oxide reductase transcription reg 94.36
COG2203175 FhlA FOG: GAF domain [Signal transduction mechanis 94.07
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 93.49
PRK12705508 hypothetical protein; Provisional 90.72
PRK05092931 PII uridylyl-transferase; Provisional 90.39
COG1956163 GAF domain-containing protein [Signal transduction 89.75
TIGR01353381 dGTP_triPase deoxyguanosinetriphosphate triphospho 89.06
PRK10119231 putative hydrolase; Provisional 88.0
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 87.96
COG1078421 HD superfamily phosphohydrolases [General function 87.88
PRK01286336 deoxyguanosinetriphosphate triphosphohydrolase-lik 87.39
PRK03059856 PII uridylyl-transferase; Provisional 87.28
PRK13558665 bacterio-opsin activator; Provisional 87.08
PRK00275895 glnD PII uridylyl-transferase; Provisional 87.01
TIGR02851180 spore_V_T stage V sporulation protein T. Members o 86.84
KOG2681|consensus498 86.49
PRK05007884 PII uridylyl-transferase; Provisional 86.2
PRK01759854 glnD PII uridylyl-transferase; Provisional 85.13
TIGR03760218 ICE_TraI_Pfluor integrating conjugative element re 84.29
COG0232412 Dgt dGTP triphosphohydrolase [Nucleotide transport 83.56
PRK04374869 PII uridylyl-transferase; Provisional 82.6
PRK05318432 deoxyguanosinetriphosphate triphosphohydrolase-lik 82.21
TIGR0027780 HDIG uncharacterized domain HDIG. This domain is f 81.69
PRK00227693 glnD PII uridylyl-transferase; Provisional 80.97
PRK03007428 deoxyguanosinetriphosphate triphosphohydrolase-lik 80.36
PRK03381774 PII uridylyl-transferase; Provisional 80.07
>KOG3689|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.9e-100  Score=835.52  Aligned_cols=381  Identities=48%  Similarity=0.855  Sum_probs=354.1

Q ss_pred             CCCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHh-------------------
Q psy8796           1 MVDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECL-------------------   61 (536)
Q Consensus         1 ~~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~-------------------   61 (536)
                      +.||+|+++.|. .|.+.+++||+||.+.+|++|||+|++||.+|+ +|+..||..+..+.                   
T Consensus       265 ~~~~~f~~q~d~-~~~~~~~il~~pi~~~~~~~igv~~~~nk~~g~-~f~~~de~~~~~~~~~~gl~i~~~~~y~~~~~s  342 (707)
T KOG3689|consen  265 IADPRFDKQVDE-DGTGIRPILCIPIKNKKGEVIGVQQLVNKEDGN-PFSRNDEDLFEAFTIFCGLSIHNTHMYSKINKS  342 (707)
T ss_pred             cccccccccccc-cccccceeEEEecccccCceecceeeeccccCC-ccccchHHHHHHHHHHHhhhhhhhhhHHHHhhh
Confidence            469999999998 888888899999999889999999999999998 99999996544332                   


Q ss_pred             -----------HhhhcccCccccchhcccCCccccccccceeeecCCCCchhhhHHHHHhhhhhchhhhcccCHHHHHHH
Q psy8796          62 -----------SYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRW  130 (536)
Q Consensus        62 -----------s~~a~~~~e~~~kLl~~~ip~~~~~~l~s~~F~~~~l~~~el~~~~~~mF~~~~l~~~f~I~~~~L~~F  130 (536)
                                 +||+.+..++..     .+| +...++..|.|+++.+++.++..+++.||+++|++++|+|+.++|++|
T Consensus       343 ~~r~~v~~e~l~~h~~~~~~e~~-----~~~-~~~~~l~d~~f~d~~~~~~~l~~~~~~mf~~l~lv~~f~I~~~tL~r~  416 (707)
T KOG3689|consen  343 EPRQGVALEFLSYHAKALEEEVQ-----WGP-ATILKLLDFFFSDRLLSENELTKCTFRMFQDLGLVKKFKIDVETLCRF  416 (707)
T ss_pred             ccccchhHHHHHHHHhhhHHhhc-----ccc-hhhhccccceeccccCCCchHHHHHHHHHHHcCcceeeccCHHHHHHH
Confidence                       222222222222     224 445678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCC-CCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC
Q psy8796         131 VLSVKKNYR-PVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT  209 (536)
Q Consensus       131 l~~V~~~Y~-~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~  209 (536)
                      |++|+++|| +||||||+||+||+|+||.+|+++++..+||++|++|+++||+|||+||||+||.|++|++||||.+|++
T Consensus       417 lltV~k~Yr~~v~YHNw~HAf~VaQ~m~~lL~t~~L~~~fTdlEiLalliAalcHDlDHrGtNN~f~iks~s~LA~lY~~  496 (707)
T KOG3689|consen  417 LLTVEKNYRSNVPYHNWRHAFDVAQAMFALLKTPKLQNKFTDLEILALLIAALCHDLDHRGTNNSYLIKSNSPLAQLYND  496 (707)
T ss_pred             HhhhhhccccCCcchhHHHHHHHHHHHHHHHhchhHHhhcChHHHHHHHHHHHHccCCCCCCCcHHHHhcCCHHHHHhCC
Confidence            999999999 8999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             -CccccchhHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc-CCCCCCcHHHHHHHH
Q psy8796         210 -STMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVEN-GEFDWQSEEKKQLLC  287 (536)
Q Consensus       210 -SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~-~~~d~~~~e~r~lll  287 (536)
                       |||||||++++++||++++||||+||+.++|++++++|+++|||||||+||+++.+|+++++. |.+++.+.+||.+++
T Consensus       497 ~SvLE~HH~~~~~~lLqe~~~nIfsnLs~~~~~~~~~~i~~~ILATDla~h~~~~~~lk~~v~~~~~~~~~~~~hr~lvl  576 (707)
T KOG3689|consen  497 SSVLENHHFAQAFKLLQEEGCNIFSNLSKKQYQQIRKLIIDAILATDLALHFKKRADLKEMVETKGVYDLENYSHRILVL  576 (707)
T ss_pred             ccHHHHHHHHHHHHHHhccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHH
Confidence             999999999999999999999999999999999999999999999999999999999999998 899999999999999


Q ss_pred             HHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhC
Q psy8796         288 GMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTF  367 (536)
Q Consensus       288 ~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~  367 (536)
                      +|+||||||||++|||+++++|+++|++|||+|||+|+ .++..|+|||||++.. +|++|||||++||+|+|+++++++
T Consensus       577 ~mmmtacDLSn~TKpwei~~qwa~~I~~EFf~QGDeek-~lg~~p~pmmDR~k~~-vp~~QvgFid~I~~Plyet~a~l~  654 (707)
T KOG3689|consen  577 AMMMTACDLSNPTKPWEIQKQWAELIAEEFFDQGDEEK-ELGLEPSPMMDRDKAS-VPKLQVGFIDYICIPLYETWADLV  654 (707)
T ss_pred             HHHHHHhhccCCcCCccHHHHHHHHHHHHHHhcchHHH-HcCCCCCcccccCccc-CchhhhhHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999777 5789999999999865 999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHH
Q psy8796         368 PWIQPLYDGTYENRKHWQDLAEKV  391 (536)
Q Consensus       368 P~l~~l~~~l~~N~~~W~~l~e~~  391 (536)
                      |+.+|+++.+.+|+.+|++++++.
T Consensus       655 ~~~~pmld~l~~Nr~~w~~l~~~~  678 (707)
T KOG3689|consen  655 PDAQPMLDGLEDNREWWQSLIPES  678 (707)
T ss_pred             cchhhHHHHHHHhHHHHHHhhhhh
Confidence            999999999999999999999854

>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP Back     alignment and domain information
>KOG3688|consensus Back     alignment and domain information
>KOG1229|consensus Back     alignment and domain information
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>KOG3689|consensus Back     alignment and domain information
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG1956 GAF domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative Back     alignment and domain information
>PRK10119 putative hydrolase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>COG1078 HD superfamily phosphohydrolases [General function prediction only] Back     alignment and domain information
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR02851 spore_V_T stage V sporulation protein T Back     alignment and domain information
>KOG2681|consensus Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family Back     alignment and domain information
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>TIGR00277 HDIG uncharacterized domain HDIG Back     alignment and domain information
>PRK00227 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
3bjc_A878 Crystal Structure Of The Pde5a Catalytic Domain In 1e-111
1t9r_A366 Catalytic Domain Of Human Phosphodiesterase 5a Leng 1e-105
1rkp_A326 Crystal Structure Of Pde5a1-Ibmx Length = 326 1e-103
3b2r_A330 Crystal Structure Of Pde5a1 Catalytic Domain In Com 1e-103
2h40_A326 Crystal Structure Of The Catalytic Domain Of Unliga 1e-103
3shy_A347 Crystal Structure Of The Pde5a1 Catalytic Domain In 1e-102
1udt_A324 Crystal Structure Of Human Phosphodiesterase 5 Comp 1e-102
3jwq_A330 Crystal Structure Of Chimeric Pde5/pde6 Catalytic D 1e-102
1xoz_A364 Catalytic Domain Of Human Phosphodiesterase 5a In C 1e-100
2chm_A326 Crystal Structure Of N2 Substituted Pyrazolo Pyrimi 3e-99
1t9s_A347 Catalytic Domain Of Human Phosphodiesterase 5a In C 3e-99
3hc8_A324 Investigation Of Aminopyridiopyrazinones As Pde5 In 8e-99
3ibj_A691 X-Ray Structure Of Pde2a Length = 691 1e-74
2y0j_A340 Triazoloquinazolines As A Novel Class Of Phosphodie 5e-68
4dff_A352 The Sar Development Of Dihydroimidazoisoquinoline D 3e-67
3sn7_A345 Highly Potent, Selective, And Orally Active Phospho 2e-66
3uuo_A337 The Discovery Of Potent, Selectivity, And Orally Bi 3e-66
4ael_A344 Pde10a In Complex With The Inhibitor Az5 Length = 3 3e-66
3ui7_A333 Discovery Of Orally Active Pyrazoloquinoline As A P 3e-66
2oun_A331 Crystal Structure Of Pde10a2 In Complex With Amp Le 4e-66
4ddl_A338 Pde10a Crystal Structure Complexed With Novel Inhib 4e-66
2wey_A343 Human Pde-Papaverine Complex Obtained By Ligand Soa 5e-66
3hqy_A380 Discovery Of Novel Inhibitors Of Pde10a Length = 38 8e-66
2o8h_A362 Crystal Structure Of The Catalytic Domain Of Rat Ph 8e-66
3hqw_A376 Discovery Of Novel Inhibitors Of Pde10a Length = 37 8e-66
2ouv_A331 Crystal Structure Of Pde10a2 Mutant Of D564n Length 1e-65
1z1l_A345 The Crystal Structure Of The Phosphodiesterase 2a C 2e-65
2our_A331 Crystal Structure Of Pde10a2 Mutant D674a In Comple 3e-65
3itm_A345 Catalytic Domain Of Hpde2a Length = 345 6e-65
4heu_A318 Crystal Structure Of Pde10a With A Biaryl Ether Inh 7e-65
3lxg_A308 Crystal Structure Of Rat Phosphodiesterase 10a In C 1e-64
2r8q_A359 Structure Of Lmjpdeb1 In Complex With Ibmx Length = 3e-43
3qi3_A533 Crystal Structure Of Pde9a(Q453e) In Complex With I 1e-36
3n3z_A326 Crystal Structure Of Pde9a (E406a) Mutant In Comple 3e-36
2yy2_A333 Crystal Structure Of The Human Phosphodiesterase 9a 3e-36
3dy8_A329 Human Phosphodiesterase 9 In Complex With Product 5 5e-36
2hd1_A326 Crystal Structure Of Pde9 In Complex With Ibmx Leng 5e-36
2qym_A358 Crystal Structure Of Unliganded Pde4c2 Length = 358 2e-30
3g4g_A421 Crystal Structure Of Human Phosphodiesterase 4d Wit 3e-30
3g4i_A381 Crystal Structure Of Human Phosphodiesterase 4d Wit 3e-30
3iad_A377 Crystal Structure Of Human Phosphodiesterase 4d Wit 3e-30
1tb7_A332 Catalytic Domain Of Human Phosphodiesterase 4d In C 4e-30
3sl5_A359 Crystal Structure Of The Catalytic Domain Of Pde4d2 4e-30
1q9m_A360 Three Dimensional Structures Of Pde4d In Complex Wi 4e-30
1zkn_A334 Structure Of Pde4d2-Ibmx Length = 334 5e-30
2fm0_A361 Crystal Structure Of Pde4d In Complex With L-869298 5e-30
1mkd_A328 Crystal Structure Of Pde4d Catalytic Domain And Zar 5e-30
2qyn_A328 Crystal Structure Of Pde4d2 In Complex With Inhibit 5e-30
1xom_A349 Catalytic Domain Of Human Phosphodiesterase 4d In C 5e-30
2pw3_A327 Structure Of The Pde4d-Camp Complex Length = 327 2e-29
1taz_A365 Catalytic Domain Of Human Phosphodiesterase 1b Leng 3e-28
3i8v_A354 Crystal Structure Of Human Pde4a With 4-(3-butoxy-4 8e-28
3tvx_A338 The Structure Of Pde4a With Pentoxifylline At 2.84a 1e-27
2qyk_A335 Crystal Structure Of Pde4a10 In Complex With Inhibi 1e-27
1xm6_A398 Catalytic Domain Of Human Phosphodiesterase 4b In C 6e-25
1zkl_A353 Multiple Determinants For Inhibitor Selectivity Of 9e-25
1xm4_A398 Catalytic Domain Of Human Phosphodiesterase 4b In C 1e-24
1xlz_A398 Catalytic Domain Of Human Phosphodiesterase 4b In C 1e-24
3ecm_A338 Crystal Structure Of The Unliganded Pde8a Catalytic 1e-24
3g45_A421 Crystal Structure Of Human Phosphodiesterase 4b Wit 1e-24
3g3n_A318 Pde7a Catalytic Domain In Complex With 3-(2,6- Difl 2e-24
3ly2_A357 Catalytic Domain Of Human Phosphodiesterase 4b In C 2e-24
2qyl_A337 Crystal Structure Of Pde4b2b In Complex With Inhibi 2e-24
1tb5_A381 Catalytic Domain Of Human Phosphodiesterase 4b In C 2e-24
1xlx_A398 Catalytic Domain Of Human Phosphodiesterase 4b In C 2e-24
3kkt_A398 Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s, 2e-24
3o0j_A323 Pde4b In Complex With Ligand An2898 Length = 323 2e-24
1f0j_A377 Catalytic Domain Of Human Phosphodiesterase 4b2b Le 2e-24
1ro6_A378 Crystal Structure Of Pde4b2b Complexed With Rolipra 3e-24
3hmv_A378 Catalytic Domain Of Human Phosphodiesterase 4b2b In 4e-24
3d3p_A353 Crystal Structure Of Pde4b Catalytic Domain In Comp 4e-24
3v93_A345 Unliganded Structure Of Tcrpdec1 Catalytic Domain L 3e-17
1so2_A420 Catalytic Domain Of Human Phosphodiesterase 3b In C 3e-17
3lfv_A431 Crystal Structure Of Unliganded Pde5a Gaf Domain Le 3e-11
2k31_A176 Solution Structure Of Cgmp-Binding Gaf Domain Of Ph 4e-11
3mf0_A432 Crystal Structure Of Pde5a Gaf Domain (89-518) Leng 4e-11
2zmf_A189 Crystal Structure Of The C-Terminal Gaf Domain Of H 1e-08
1mc0_A368 Regulatory Segment Of Mouse 3',5'-Cyclic Nucleotide 2e-05
1ykd_A398 Crystal Structure Of The Tandem Gaf Domains From A 8e-04
>pdb|3BJC|A Chain A, Crystal Structure Of The Pde5a Catalytic Domain In Complex With A Novel Inhibitor Length = 878 Back     alignment and structure 
Iteration: 1

 Score =  397 bits (1020), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/415 (47%), Positives = 268/415 (64%), Gaps = 39/415 (9%)
Query: 20  SILCVPI-NSYEGEVIGVAQIINK----TDGTSSFTDRDIE------------------- 55
           S+LC PI N  + +VIGV Q++NK    T     F   D +                   
Sbjct: 453 SLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQNTQMY 512
Query: 56  -----------VALECLSYHATASGEDTRKL---IKDTIPSAQVYNLYSFTFIDFDLSDM 101
                      V LE LSYHA+A+ E+TR+L       +PSAQ   +  F+F DF+LSD+
Sbjct: 513 EAVERAMAKQMVTLEVLSYHASAAEEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDL 572
Query: 102 DTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAML 160
           +T   TIRMF + +LV+ F + ++VLCRW+LSVKKNYR  V YHNWRHA N AQ MFA L
Sbjct: 573 ETALCTIRMFTDLNLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAAL 632
Query: 161 KTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTSTMEHHHFDQC 220
           K GK++  ++DLEIL LL+A L HDLDHRG NN++  ++E PLA LY  S MEHHHFDQC
Sbjct: 633 KAGKIQNKLTDLEILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQC 692
Query: 221 VMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSE 280
           +MILNS GN I   LS  +Y+  +K+++ +IL+TDLA+Y K++  F +L+   +F+ +  
Sbjct: 693 LMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDP 752
Query: 281 EKKQLLCGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRER 340
            +K+L   M+MTACD+ AI KPW +Q ++A+LVA EFFDQGD E+ +LN +P  +M+RE+
Sbjct: 753 HQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREK 812
Query: 341 KDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAEKVEMGL 395
           K+++P MQVGFID ICL LY+ ++       PL DG  +NR+ WQ LAE+ E  L
Sbjct: 813 KNKIPSMQVGFIDAICLQLYEALTHVSEDCFPLLDGCRKNRQKWQALAEQQEKML 867
>pdb|1T9R|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a Length = 366 Back     alignment and structure
>pdb|1RKP|A Chain A, Crystal Structure Of Pde5a1-Ibmx Length = 326 Back     alignment and structure
>pdb|3B2R|A Chain A, Crystal Structure Of Pde5a1 Catalytic Domain In Complex With Vardenafil Length = 330 Back     alignment and structure
>pdb|2H40|A Chain A, Crystal Structure Of The Catalytic Domain Of Unliganded Pde5 Length = 326 Back     alignment and structure
>pdb|3SHY|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In Complex With Novel Inhibitors Length = 347 Back     alignment and structure
>pdb|1UDT|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed With Sildenafil(Viagra) Length = 324 Back     alignment and structure
>pdb|3JWQ|A Chain A, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain Complexed With Sildenafil Length = 330 Back     alignment and structure
>pdb|1XOZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex With Tadalafil Length = 364 Back     alignment and structure
>pdb|2CHM|A Chain A, Crystal Structure Of N2 Substituted Pyrazolo Pyrimidinones- A Flipped Binding Mode In Pde5 Length = 326 Back     alignment and structure
>pdb|1T9S|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex With Gmp Length = 347 Back     alignment and structure
>pdb|3HC8|A Chain A, Investigation Of Aminopyridiopyrazinones As Pde5 Inhibitors: Evaluation Of Modifications To The Central Ring System. Length = 324 Back     alignment and structure
>pdb|3IBJ|A Chain A, X-Ray Structure Of Pde2a Length = 691 Back     alignment and structure
>pdb|2Y0J|A Chain A, Triazoloquinazolines As A Novel Class Of Phosphodiesterase 10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation. Length = 340 Back     alignment and structure
>pdb|4DFF|A Chain A, The Sar Development Of Dihydroimidazoisoquinoline Derivatives As Phosphodiesterase 10a Inhibitors For The Treatment Of Schizophrenia Length = 352 Back     alignment and structure
>pdb|3SN7|A Chain A, Highly Potent, Selective, And Orally Active Phosphodiestarase 10a Inhibitors Length = 345 Back     alignment and structure
>pdb|3UUO|A Chain A, The Discovery Of Potent, Selectivity, And Orally Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For The Treatment Of Schizophrenia Length = 337 Back     alignment and structure
>pdb|4AEL|A Chain A, Pde10a In Complex With The Inhibitor Az5 Length = 344 Back     alignment and structure
>pdb|3UI7|A Chain A, Discovery Of Orally Active Pyrazoloquinoline As A Potent Pde10 Inhibitor For The Management Of Schizophrenia Length = 333 Back     alignment and structure
>pdb|2OUN|A Chain A, Crystal Structure Of Pde10a2 In Complex With Amp Length = 331 Back     alignment and structure
>pdb|4DDL|A Chain A, Pde10a Crystal Structure Complexed With Novel Inhibitor Length = 338 Back     alignment and structure
>pdb|2WEY|A Chain A, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of Cross-Linked Protein Crystals Length = 343 Back     alignment and structure
>pdb|3HQY|A Chain A, Discovery Of Novel Inhibitors Of Pde10a Length = 380 Back     alignment and structure
>pdb|2O8H|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Phosphodiesterase 10a Length = 362 Back     alignment and structure
>pdb|3HQW|A Chain A, Discovery Of Novel Inhibitors Of Pde10a Length = 376 Back     alignment and structure
>pdb|2OUV|A Chain A, Crystal Structure Of Pde10a2 Mutant Of D564n Length = 331 Back     alignment and structure
>pdb|1Z1L|A Chain A, The Crystal Structure Of The Phosphodiesterase 2a Catalytic Domain Length = 345 Back     alignment and structure
>pdb|2OUR|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With Camp Length = 331 Back     alignment and structure
>pdb|3ITM|A Chain A, Catalytic Domain Of Hpde2a Length = 345 Back     alignment and structure
>pdb|4HEU|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor ((1-(3-(4- ((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2- Yl)piperidin-4- Yl)methanol) Length = 318 Back     alignment and structure
>pdb|3LXG|A Chain A, Crystal Structure Of Rat Phosphodiesterase 10a In Complex Wi Web-3 Length = 308 Back     alignment and structure
>pdb|2R8Q|A Chain A, Structure Of Lmjpdeb1 In Complex With Ibmx Length = 359 Back     alignment and structure
>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Inhibitor Bay73-6691 Length = 533 Back     alignment and structure
>pdb|3N3Z|A Chain A, Crystal Structure Of Pde9a (E406a) Mutant In Complex With Ibmx Length = 326 Back     alignment and structure
>pdb|2YY2|A Chain A, Crystal Structure Of The Human Phosphodiesterase 9a Catalytic Domain Complexed With Ibmx Length = 333 Back     alignment and structure
>pdb|3DY8|A Chain A, Human Phosphodiesterase 9 In Complex With Product 5'-gmp (e+p Complex) Length = 329 Back     alignment and structure
>pdb|2HD1|A Chain A, Crystal Structure Of Pde9 In Complex With Ibmx Length = 326 Back     alignment and structure
>pdb|2QYM|A Chain A, Crystal Structure Of Unliganded Pde4c2 Length = 358 Back     alignment and structure
>pdb|3G4G|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With Regulatory Domain And D155871 Length = 421 Back     alignment and structure
>pdb|3G4I|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With D155871 Length = 381 Back     alignment and structure
>pdb|3IAD|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With Bound Allosteric Modulator Length = 377 Back     alignment and structure
>pdb|1TB7|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex With Amp Length = 332 Back     alignment and structure
>pdb|3SL5|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 Complexed With Compound 10d Length = 359 Back     alignment and structure
>pdb|1Q9M|A Chain A, Three Dimensional Structures Of Pde4d In Complex With Roliprams And Implication On Inhibitor Selectivity Length = 360 Back     alignment and structure
>pdb|1ZKN|A Chain A, Structure Of Pde4d2-Ibmx Length = 334 Back     alignment and structure
>pdb|2FM0|A Chain A, Crystal Structure Of Pde4d In Complex With L-869298 Length = 361 Back     alignment and structure
>pdb|1MKD|A Chain A, Crystal Structure Of Pde4d Catalytic Domain And Zardaverine Complex Length = 328 Back     alignment and structure
>pdb|2QYN|A Chain A, Crystal Structure Of Pde4d2 In Complex With Inhibitor Npv Length = 328 Back     alignment and structure
>pdb|1XOM|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex With Cilomilast Length = 349 Back     alignment and structure
>pdb|2PW3|A Chain A, Structure Of The Pde4d-Camp Complex Length = 327 Back     alignment and structure
>pdb|1TAZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 1b Length = 365 Back     alignment and structure
>pdb|3I8V|A Chain A, Crystal Structure Of Human Pde4a With 4-(3-butoxy-4-methoxyphenyl) Methyl-2-imidazolidone Length = 354 Back     alignment and structure
>pdb|3TVX|A Chain A, The Structure Of Pde4a With Pentoxifylline At 2.84a Resolution Length = 338 Back     alignment and structure
>pdb|2QYK|A Chain A, Crystal Structure Of Pde4a10 In Complex With Inhibitor Npv Length = 335 Back     alignment and structure
>pdb|1XM6|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex With (R)- Mesopram Length = 398 Back     alignment and structure
>pdb|1ZKL|A Chain A, Multiple Determinants For Inhibitor Selectivity Of Cyclic Nucleotide Phosphodiesterases Length = 353 Back     alignment and structure
>pdb|1XM4|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex With Piclamilast Length = 398 Back     alignment and structure
>pdb|1XLZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex With Filaminast Length = 398 Back     alignment and structure
>pdb|3ECM|A Chain A, Crystal Structure Of The Unliganded Pde8a Catalytic Domain Length = 338 Back     alignment and structure
>pdb|3G45|A Chain A, Crystal Structure Of Human Phosphodiesterase 4b With Regulatory Domain And D155988 Length = 421 Back     alignment and structure
>pdb|3G3N|A Chain A, Pde7a Catalytic Domain In Complex With 3-(2,6- Difluorophenyl)-2-(Methylthio)quinazolin-4(3h)-One Length = 318 Back     alignment and structure
>pdb|3LY2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex Wi Coumarin-Based Inhibitor Length = 357 Back     alignment and structure
>pdb|2QYL|A Chain A, Crystal Structure Of Pde4b2b In Complex With Inhibitor Npv Length = 337 Back     alignment and structure
>pdb|1TB5|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex With Amp Length = 381 Back     alignment and structure
>pdb|1XLX|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex With Cilomilast Length = 398 Back     alignment and structure
>pdb|3KKT|A Chain A, Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s,4r)- Bicyclo[2.2.1]hept-2-Yloxy]-4-Methoxyp Henyl]tetrahydro-2(1h)- Pyrimidinone Reveals Ordering Of The C-Terminal Helix Residues 502- 509. Length = 398 Back     alignment and structure
>pdb|3O0J|A Chain A, Pde4b In Complex With Ligand An2898 Length = 323 Back     alignment and structure
>pdb|1F0J|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b Length = 377 Back     alignment and structure
>pdb|1RO6|A Chain A, Crystal Structure Of Pde4b2b Complexed With Rolipram (r & S) Length = 378 Back     alignment and structure
>pdb|3HMV|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In Complex Tetrahydrobenzothiophene Inhibitor Length = 378 Back     alignment and structure
>pdb|3D3P|A Chain A, Crystal Structure Of Pde4b Catalytic Domain In Complex With A Pyrazolopyridine Inhibitor Length = 353 Back     alignment and structure
>pdb|3V93|A Chain A, Unliganded Structure Of Tcrpdec1 Catalytic Domain Length = 345 Back     alignment and structure
>pdb|1SO2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex With A Dihydropyridazine Inhibitor Length = 420 Back     alignment and structure
>pdb|3LFV|A Chain A, Crystal Structure Of Unliganded Pde5a Gaf Domain Length = 431 Back     alignment and structure
>pdb|2K31|A Chain A, Solution Structure Of Cgmp-Binding Gaf Domain Of Phosphodiesterase 5 Length = 176 Back     alignment and structure
>pdb|3MF0|A Chain A, Crystal Structure Of Pde5a Gaf Domain (89-518) Length = 432 Back     alignment and structure
>pdb|2ZMF|A Chain A, Crystal Structure Of The C-Terminal Gaf Domain Of Human Phosphodiesterase 10a Length = 189 Back     alignment and structure
>pdb|1MC0|A Chain A, Regulatory Segment Of Mouse 3',5'-Cyclic Nucleotide Phosphodiesterase 2a, Containing The Gaf A And Gaf B Domains Length = 368 Back     alignment and structure
>pdb|1YKD|A Chain A, Crystal Structure Of The Tandem Gaf Domains From A Cyanobacterial Adenylyl Cyclase: Novel Modes Of Ligand-Binding And Dimerization Length = 398 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
1tbf_A347 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 1e-148
2our_A331 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 1e-139
3bjc_A878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 1e-136
3bjc_A878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 2e-14
3ibj_A691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 1e-135
3ibj_A691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 1e-10
3itu_A345 CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn- 1e-133
3hr1_A380 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 1e-132
1y2k_A349 DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi 1e-123
1zkl_A353 HCP1, TM22, high-affinity CAMP-specific 3',5'-cycl 1e-123
3dyn_A329 High affinity CGMP-specific 3',5'-cyclic phosphod 1e-123
1f0j_A377 PDE4B, phosphodiesterase 4B; PDE phosphodiesterase 1e-122
3v93_A345 Cyclic nucleotide specific phosphodiesterase; para 1e-122
2r8q_A359 Class I phosphodiesterase PDEB1; leishimaniasis, p 1e-121
3ecm_A338 High affinity CAMP-specific and IBMX-insensitive 3 1e-121
3qi3_A533 High affinity CGMP-specific 3',5'-cyclic phosphod 1e-120
3g4g_A421 DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi 1e-118
1taz_A365 Calcium/calmodulin-dependent 3',5'-cyclic nucleot 1e-118
1so2_A420 CGMP-inhibited 3',5'-cyclic phosphodiesterase B; P 1e-107
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 1e-17
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 8e-17
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 3e-15
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 6e-12
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 3e-13
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 8e-13
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 4e-09
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 4e-10
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 1e-08
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 5e-07
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 1e-04
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ... Length = 347 Back     alignment and structure
 Score =  427 bits (1099), Expect = e-148
 Identities = 165/336 (49%), Positives = 228/336 (67%), Gaps = 2/336 (0%)

Query: 56  VALECLSYHATASGEDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECD 115
             L     H      + + L    +PSAQ   +  F+F DF+LSD++T   TIRMF + +
Sbjct: 12  SGLVPRGSHMEEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLN 71

Query: 116 LVKQFHIPYDVLCRWVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEI 174
           LV+ F + ++VLCRW+LSVKKNYR  V YHNWRHA N AQ MFA LK GK++  ++DLEI
Sbjct: 72  LVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEI 131

Query: 175 LGLLVACLCHDLDHRGTNNAFQTKTESPLAILY-TTSTMEHHHFDQCVMILNSDGNNIFQ 233
           L LL+A L HDLDH G +N F   T S LA++Y   S +EHHHFDQC+MILNS GN I  
Sbjct: 132 LALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEHHHFDQCLMILNSPGNQILS 191

Query: 234 ALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTA 293
            LS  +Y+  +K+++ +IL+TDLA+Y K++  F +L+   +F+ +   +K+L   M+MTA
Sbjct: 192 GLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTA 251

Query: 294 CDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFID 353
           CD+ AI KPW +Q ++A+LVA EFFDQGD E+ +LN +P  +M+RE+K+++P MQVGFID
Sbjct: 252 CDLSAITKPWPIQQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFID 311

Query: 354 VICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAE 389
            ICL LY+ ++       PL DG  +NR+ WQ LAE
Sbjct: 312 AICLQLYEALTHVSEDCFPLLDGCRKNRQKWQALAE 347
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ... Length = 331 Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Length = 878 Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Length = 878 Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Length = 691 Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Length = 691 Back     alignment and structure
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A Length = 345 Back     alignment and structure
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* Length = 380 Back     alignment and structure
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ... Length = 349 Back     alignment and structure
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A* Length = 353 Back     alignment and structure
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 3n3z_A* Length = 329 Back     alignment and structure
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ... Length = 377 Back     alignment and structure
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A* Length = 345 Back     alignment and structure
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major} Length = 359 Back     alignment and structure
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A* Length = 338 Back     alignment and structure
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation, glutamine switch, hydrolase-hydrolase inhibitor CO; HET: PDB; 2.30A {Homo sapiens} PDB: 3qi4_A* Length = 533 Back     alignment and structure
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* Length = 421 Back     alignment and structure
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2 Length = 365 Back     alignment and structure
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A* Length = 420 Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Length = 180 Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Length = 368 Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Length = 368 Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Length = 169 Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Length = 398 Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Length = 398 Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Length = 171 Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Length = 171 Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Length = 181 Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Length = 165 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query536
3ibj_A691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 100.0
1tbf_A347 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 100.0
3bjc_A878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 100.0
3itu_A345 CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn- 100.0
2our_A331 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 100.0
3hr1_A380 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 100.0
3dyn_A329 High affinity CGMP-specific 3',5'-cyclic phosphod 100.0
2r8q_A359 Class I phosphodiesterase PDEB1; leishimaniasis, p 100.0
3v93_A345 Cyclic nucleotide specific phosphodiesterase; para 100.0
1f0j_A377 PDE4B, phosphodiesterase 4B; PDE phosphodiesterase 100.0
3qi3_A533 High affinity CGMP-specific 3',5'-cyclic phosphod 100.0
3ecm_A338 High affinity CAMP-specific and IBMX-insensitive 3 100.0
3g4g_A421 DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi 100.0
1y2k_A349 DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi 100.0
1zkl_A353 HCP1, TM22, high-affinity CAMP-specific 3',5'-cycl 100.0
1taz_A365 Calcium/calmodulin-dependent 3',5'-cyclic nucleot 100.0
1so2_A420 CGMP-inhibited 3',5'-cyclic phosphodiesterase B; P 100.0
3cit_A160 Sensor histidine kinase; MEGA: 3.30.450.40, struct 99.14
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 99.13
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 98.44
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 98.37
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 98.25
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 98.19
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 98.06
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 97.98
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 97.87
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 97.83
1vhm_A195 Protein YEBR; structural genomics, unknown functio 97.8
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 97.76
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 97.72
3bjc_A878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 97.71
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 97.7
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 97.66
2k2n_A172 Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do 97.64
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 97.64
3hcy_A151 Putative two-component sensor histidine kinase PR; 97.63
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 97.59
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 97.57
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 97.55
2lb5_A208 Sensor histidine kinase; PCB, transferase, GAF dom 97.54
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 97.51
3ibj_A691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 97.48
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 97.36
3p01_A184 Two-component response regulator; PSI-2, midwest c 97.34
2qyb_A181 Membrane protein, putative; GAF domain, domain of 96.58
3eea_A162 GAF domain/HD domain protein; structural genomics, 95.62
4glq_A171 Methyl-accepting chemotaxis protein; chromophore, 95.21
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 94.85
3dto_A223 BH2835 protein; all alpha-helical protein, structu 94.66
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 94.43
2hek_A371 Hypothetical protein; predominantly alpha helical 94.18
3irh_A480 HD domain protein; phosphohydrolase, dntpase, stru 93.89
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 93.74
3u1n_A528 SAM domain and HD domain-containing protein 1; deo 92.98
4eu0_A298 PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A 92.76
2w1r_A123 Spovt, stage V sporulation protein T; regulatory G 92.32
2q14_A410 Phosphohydrolase; BT4208, HD domain, structural ge 92.32
2qgs_A225 Protein Se1688; alpha-helical protein, structural 92.22
2pgs_A451 Putative deoxyguanosinetriphosphate triphosphohyd; 92.18
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 90.98
3bg2_A444 DGTP triphosphohydrolase; structural genomics, NYS 90.6
2dqb_A376 Deoxyguanosinetriphosphate triphosphohydrolase, P; 88.9
2o08_A188 BH1327 protein; putative HD superfamily hydrolase, 84.52
3gw7_A239 Uncharacterized protein YEDJ; all alpha-helical pr 84.5
3ccg_A190 HD superfamily hydrolase; NP_347894.1, HD domain, 82.83
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.8e-93  Score=799.76  Aligned_cols=386  Identities=38%  Similarity=0.718  Sum_probs=341.8

Q ss_pred             CCCCCCCccccccCCceeeeeEEeeeecCCCcEEEEEEEEecCCCCCCCCHHHHHHHHHHhHhhhc--------------
Q psy8796           1 MVDPRFNNEIDRRTGYTTNSILCVPINSYEGEVIGVAQIINKTDGTSSFTDRDIEVALECLSYHAT--------------   66 (536)
Q Consensus         1 ~~dprF~~~~D~~tgy~TrSiLc~Pi~~~~~~vIGViqliNK~~~~~~Ft~~D~~~~~~~~s~~a~--------------   66 (536)
                      +.||||.+.+|..+||.+||+||+||...+|+++||+++.|+.++. +|+++|++++..++.+.|.              
T Consensus       269 ~~d~~~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~-~f~~~d~~ll~~lA~~~aiAIena~l~~~l~~~  347 (691)
T 3ibj_A          269 YAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGP-WFSKFDEDLATAFSIYCGISIAHSLLYKKVNEA  347 (691)
T ss_dssp             TTSTTC------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSS-SCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCccccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999997558999999999999876 8999999765444433333              


Q ss_pred             ----------------ccCccccchhcccCCccccc--cccceeeecCCCCchhhhHHHHHhhhhhchhhhcccCHHHHH
Q psy8796          67 ----------------ASGEDTRKLIKDTIPSAQVY--NLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLC  128 (536)
Q Consensus        67 ----------------~~~e~~~kLl~~~ip~~~~~--~l~s~~F~~~~l~~~el~~~~~~mF~~~~l~~~f~I~~~~L~  128 (536)
                                      ++.+++.+++...+|....+  ++..|+|+++++++++++.+++.||.++|++++|+|+.++|.
T Consensus       348 ~~~~~~~~e~l~~~~~~~~~e~~~ll~~~i~~~~~~~~~~~~f~f~~~~l~~~~~~~~~~~~f~~~~~~~~~~i~~~~l~  427 (691)
T 3ibj_A          348 QYRSHLANEMMMYHMKVSDDEYTKLLHDGIQPVAAIDSNFASFTYTPRSLPEDDTSMAILSMLQDMNFINNYKIDCPTLA  427 (691)
T ss_dssp             HHHHHHHHHHTTTCCCCCHHHHHHHCSSCCCCSTTTCTTTTSTTCCGGGSCSSSHHHHHHHHHHHTTCTTTTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHhcCCCchhhhhhhccccccCCcCCCchHHHHHHHHHHHHcCchHhcCCCHHHHH
Confidence                            33333445556678887766  789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCchhhHHHHHHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcC
Q psy8796         129 RWVLSVKKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT  208 (536)
Q Consensus       129 ~Fl~~V~~~Y~~~pYHN~~HA~dV~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn  208 (536)
                      +|+..|+++|++||||||.||+||+|++|++++.+++..+|+++|++|+++||+|||+||||+||.|++++++|||++||
T Consensus       428 ~fl~~v~~~y~~~pyHN~~Ha~dv~q~~~~~~~~~~~~~~~~~~e~~a~~~aa~~HD~~H~G~~N~f~~~~~~~la~~y~  507 (691)
T 3ibj_A          428 RFCLMVKKGYRDPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYS  507 (691)
T ss_dssp             HHHHHHHHTSBCCSSSBHHHHHHHHHHHHHHHHHHTGGGTSCHHHHHHHHHHHHHTTTTCCCCCCSCSSSSSCCGGGTTT
T ss_pred             HHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHhccchhhhCCHHHHHHHHHHHHHccCCCCCCCcHHHHHhCChHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -C-CccccchhHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q psy8796         209 -T-STMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLL  286 (536)
Q Consensus       209 -~-SVLEnhH~a~~~~iL~~~~~nif~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~ll  286 (536)
                       + |||||||++.+++||++++||||++|++++++.+|++|+++||||||++||+++++|+++.+. .+++.++++|.++
T Consensus       508 ~d~svlE~~h~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~ilaTDm~~h~~~~~~~~~~~~~-~~~~~~~~~~~~~  586 (691)
T 3ibj_A          508 SEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILATDLAHHLRIFKDLQKMAEV-GYDRNNKQHHRLL  586 (691)
T ss_dssp             CSSSHHHHHHHHHHHHHHTSTTTCTTTTSCHHHHHHHHHHHHHHHHHTCHHHHHHHHTHHHHHHHS-CCCSSCHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhC-CCCCCCHHHHHHH
Confidence             6 999999999999999999999999999999999999999999999999999999999988765 5899999999999


Q ss_pred             HHHHHhhccccCCCCCHHHHHHHHHHHHHHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHh
Q psy8796         287 CGMMMTACDVGAIAKPWEVQHKMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDT  366 (536)
Q Consensus       287 l~lllkaADiSn~~Rp~~v~~kWa~~l~~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~  366 (536)
                      ++++||||||||++|||+++++|+.++++|||+|||+||. ++.+|+|+|||++ ..+|++|+|||++||+|||++++++
T Consensus       587 ~~~~~~~aDis~~~~~~~~~~~w~~~~~~Ef~~qgd~e~~-~g~~~~~~~dr~~-~~~~~~q~~Fi~~~~~Pl~~~~~~~  664 (691)
T 3ibj_A          587 LCLLMTSCDLSDQTKGWKTTRKIAELIYKEFFSQGDLEKA-MGNRPMEMMDREK-AYIPELQISFMEHIAMPIYKLLQDL  664 (691)
T ss_dssp             HHHHHHHHHTGGGTSCHHHHHHHHHHHHHHSSCCSSTTTC------------CC-TTHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred             HHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHhHHHh-cCCCCCcccCccc-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999994 6777888999985 6899999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHH
Q psy8796         367 FPWIQPLYDGTYENRKHWQDLAEK  390 (536)
Q Consensus       367 ~P~l~~l~~~l~~N~~~W~~l~e~  390 (536)
                      +|+++++++++++|+++|+++.++
T Consensus       665 ~p~~~~~~~~~~~N~~~W~~~~~~  688 (691)
T 3ibj_A          665 FPKAAELYERVASNREHWTKVSHL  688 (691)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHC-
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999764
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ... Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A Back     alignment and structure
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ... Back     alignment and structure
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* Back     alignment and structure
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 4gh6_A* 3n3z_A* Back     alignment and structure
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major} Back     alignment and structure
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A* Back     alignment and structure
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ... Back     alignment and structure
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation, glutamine switch, hydrolase-hydrolase inhibitor CO; HET: PDB; 2.30A {Homo sapiens} PDB: 3qi4_A* Back     alignment and structure
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} SCOP: a.211.1.0 PDB: 3ecn_A* Back     alignment and structure
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* Back     alignment and structure
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ... Back     alignment and structure
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A* Back     alignment and structure
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2 Back     alignment and structure
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A* Back     alignment and structure
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV} Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A* Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} Back     alignment and structure
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A* Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 Back     alignment and structure
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A* Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens} Back     alignment and structure
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A* Back     alignment and structure
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis} Back     alignment and structure
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV} Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis} Back     alignment and structure
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus} Back     alignment and structure
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} Back     alignment and structure
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Back     alignment and structure
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 536
d1tbfa_326 a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphod 1e-116
d3dy8a1324 a.211.1.2 (A:182-505) High-affinity cGMP-specific 1e-101
d1taza_357 a.211.1.2 (A:) Catalytic domain of cyclic nucleoti 3e-92
d1so2a_415 a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phospho 5e-92
d1y2ka1326 a.211.1.2 (A:86-411) Catalytic domain of cyclic nu 1e-91
d1f5ma_176 d.110.2.1 (A:) Hypothetical protein ykl069wp {Bake 3e-04
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]} Length = 326 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: PDEase
domain: cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  343 bits (882), Expect = e-116
 Identities = 163/322 (50%), Positives = 226/322 (70%), Gaps = 2/322 (0%)

Query: 70  EDTRKLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCR 129
            + + L    +PSAQ   +  F+F DF+LSD++T   TIRMF + +LV+ F + ++VLCR
Sbjct: 5   RELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCR 64

Query: 130 WVLSVKKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDH 188
           W+LSVKKNYR  V YHNWRHA N AQ MFA LK GK++  ++DLEIL LL+A L HDLDH
Sbjct: 65  WILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDH 124

Query: 189 RGTNNAFQTKTESPLAILY-TTSTMEHHHFDQCVMILNSDGNNIFQALSPHDYRIVMKLV 247
            G +N F   T S LA++Y   S +EHHHFDQC+MILNS GN I   LS  +Y+  +K++
Sbjct: 125 PGVSNQFLINTNSELALMYNDESVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKII 184

Query: 248 ENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQH 307
           + +IL+TDLA+Y K++  F +L+   +F+ +   +K+L   M+MTACD+ AI KPW +Q 
Sbjct: 185 KQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQ 244

Query: 308 KMAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTF 367
           ++A+LVA EFFDQGD E+ +LN +P  +M+RE+K+++P MQVGFID ICL LY+ ++   
Sbjct: 245 RIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVS 304

Query: 368 PWIQPLYDGTYENRKHWQDLAE 389
               PL DG  +NR+ WQ LAE
Sbjct: 305 EDCFPLLDGCRKNRQKWQALAE 326
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]} Length = 324 Back     information, alignment and structure
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} Length = 357 Back     information, alignment and structure
>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} Length = 415 Back     information, alignment and structure
>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide phosphodiesterase pde4d {Human (Homo sapiens) [TaxId: 9606]} Length = 326 Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query536
d1tbfa_326 cGMP-specific 3',5'-cyclic phosphodiesterase pde5a 100.0
d3dy8a1324 High-affinity cGMP-specific 3',5'-cyclic phosphodi 100.0
d1so2a_415 cGMP-inhibited 3',5'-cyclic phosphodiesterase B, p 100.0
d1y2ka1326 Catalytic domain of cyclic nucleotide phosphodiest 100.0
d1taza_357 Catalytic domain of cyclic nucleotide phosphodiest 100.0
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 98.42
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 98.03
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 97.85
d1mc0a2154 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 97.22
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 96.63
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 95.76
d3djba1213 Uncharacterized protein BT9727_1981 {Bacillus thur 95.42
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 95.01
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 94.93
d2o6ia1453 Hypothetical protein EF1143 {Enterococcus faecalis 94.86
d2heka1369 Hypothetical protein aq_1910 {Aquifex aeolicus [Ta 92.88
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 92.18
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: PDEase
domain: cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-85  Score=675.00  Aligned_cols=316  Identities=52%  Similarity=0.943  Sum_probs=304.4

Q ss_pred             chhcccCCccccccccceeeecCCCCchhhhHHHHHhhhhhchhhhcccCHHHHHHHHHHHHHcCC-CCCCCchhhHHHH
Q psy8796          74 KLIKDTIPSAQVYNLYSFTFIDFDLSDMDTCRATIRMFLECDLVKQFHIPYDVLCRWVLSVKKNYR-PVKYHNWRHALNV  152 (536)
Q Consensus        74 kLl~~~ip~~~~~~l~s~~F~~~~l~~~el~~~~~~mF~~~~l~~~f~I~~~~L~~Fl~~V~~~Y~-~~pYHN~~HA~dV  152 (536)
                      .+....+|......+..|+|++|++++++++++++.||.++|++++|+|+.++|.+|+..|+++|+ +||||||.||+||
T Consensus         9 ~~~~~~~p~~~~~~~~~~~F~~~~~~~~el~~~~~~~F~~~~l~~~~~i~~~~l~~Fl~~v~~~Y~~~~pyHN~~HA~dV   88 (326)
T d1tbfa_           9 SLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNT   88 (326)
T ss_dssp             HHHHSCCCCHHHHTTTCTTCCCTTCCHHHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHHTSCTTSSSSSHHHHHHH
T ss_pred             hhhhccCCcHHHcCcCCCCcCCCcCChHHHHHHHHHHHHHCCchhhcCCCHHHHHHHHHHHHHhCCCCCCCccHHHHHHH
Confidence            344567888888899999999999999999999999999999999999999999999999999998 5899999999999


Q ss_pred             HHHHHHHHhhchhhccCCHHHHHHHHHHhhccCCCCCCCCccccccccchhhhhcCC-CccccchhHHHHHHHhcCCCcc
Q psy8796         153 AQTMFAMLKTGKMERFMSDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYTT-STMEHHHFDQCVMILNSDGNNI  231 (536)
Q Consensus       153 ~Q~~~~lL~~~~l~~~ls~lE~lAllvAALcHDvdHpG~nN~Fli~t~spLAilYn~-SVLEnhH~a~~~~iL~~~~~ni  231 (536)
                      +|++|+++..+++..+++++|++|+++||||||+||||+||.|++++++|||++||+ |||||||++.+++||+++++||
T Consensus        89 ~q~~~~~l~~~~l~~~l~~~e~~alliAal~HDv~HpG~~N~flv~~~s~la~~ynd~SvLE~~H~~~~~~iL~~~~~ni  168 (326)
T d1tbfa_          89 AQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEHHHFDQCLMILNSPGNQI  168 (326)
T ss_dssp             HHHHHHHHHTTCCGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHTTTSSHHHHHHHHHHHHHHHSTTCCT
T ss_pred             HHHHHHHHhcCCCCccCCHHHHHHHHHHHHHhccCCCCcchHHHHhcCCHHHHHhCCccHHHHHHHHHHHHHHHhcchhh
Confidence            999999999999999999999999999999999999999999999999999999997 9999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccCCCCCHHHHHHHHH
Q psy8796         232 FQALSPHDYRIVMKLVENSILSTDLAMYFKKKNRFIQLVENGEFDWQSEEKKQLLCGMMMTACDVGAIAKPWEVQHKMAK  311 (536)
Q Consensus       232 f~~l~~~~~~~~r~~Ii~~ILATDMa~Hf~~~~~f~~~~~~~~~d~~~~e~r~lll~lllkaADiSn~~Rp~~v~~kWa~  311 (536)
                      |.++++++++.+|++|+++||||||++||+++++|+++++++++++.++++|.++++++||||||||++|||+++++|+.
T Consensus       169 ~~~l~~~~~~~~~~~ii~~ILaTDm~~H~~~~~~~~~~~~~~~~~~~~~~~r~lll~~llk~ADis~~~rp~~~~~~W~~  248 (326)
T d1tbfa_         169 LSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAE  248 (326)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHHHHHHHTGGGGSCHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhcccccCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhchhHHHhhcCCCCCcCCCccccCcccchhhhHHHHhHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Q psy8796         312 LVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPQMQVGFIDVICLPLYKVMSDTFPWIQPLYDGTYENRKHWQDLAE  389 (536)
Q Consensus       312 ~l~~EFf~QGD~Ek~~l~~~P~~~~DR~~~~~~~k~QigFi~~iv~Plf~~l~~~~P~l~~l~~~l~~N~~~W~~l~e  389 (536)
                      ++++|||.|||+|+.+++.+|+|+|||.+...+|++|+|||++||+|||+++++++|+++++++++++|+++|++++|
T Consensus       249 ~l~~Ef~~Qgd~e~~~~~~~~~~~~dr~~~~~~~~~Qi~Fi~~iv~Pl~~~l~~~~p~l~~~~~~~~~N~~~W~~l~e  326 (326)
T d1tbfa_         249 LVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSEDCFPLLDGCRKNRQKWQALAE  326 (326)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCGGGCGGGGGGHHHHHHHHHHHTHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhhHHHHhcCCCCCCccCcccccccHHHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999765567788889999987889999999999999999999999999999999999999999999864
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide phosphodiesterase pde4d {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure