Psyllid ID: psy8803

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ
Secondary Structure (PSIPRED)
ccccccccEEEccccccEEEEEcccccccEEEEEEcccccEEEEEEcccEEEEEccccccEEEEEEcccccccccEEEEEEcccccEEEEEEccccccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcccccEEEEEEcccccEEEEEEEcccccEEEEcccccEEEEEEccccEEEEEEcccccccccEEEEEEEcccccEEEEEEEEcccccccccEEEEEEEc
Coil and Loop (DISEMBL)
KKSWYEEykrldyhtpiveTEVLTQHTHQVLHVSfshngryfatcskdgYILVWtssypskvkyshdmKTFSWKYTqysqfnesdTLLLVSgvhfgtpqstsgEIAVFSLQ
Flexible Loop (DISEMBL)
kkswyeeykrldyhTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHfgtpqstsgeiavfsLQ
Low Complexity Region (SEG)
KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ
Disordered region (IsUnstruct)
***WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGT**************
Disordered Region (DISOPRED)
*KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ
Disordered Region (DISEMBL)
KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ
Disordered Region (DISPRO)
*KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q4KLI9	569	F-box/WD repeat-containin	yes	N/A	0.972	0.189	0.527	1e-28
Q969U6	566	F-box/WD repeat-containin	yes	N/A	0.972	0.190	0.527	1e-28
Q9QXW2	573	F-box/WD repeat-containin	yes	N/A	0.972	0.188	0.527	1e-28

>sp|Q4KLI9|FBXW5_RAT F-box/WD repeat-containing protein 5 OS=Rattus norvegicus GN=Fbxw5 PE=2 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/108 (52%), Positives = 76/108 (70%)

Query: 3   SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
           SWYEE++RL    P VE + L +HT QVLH+SFSH+G  FA+CSKD  + +W +     +
Sbjct: 68  SWYEEFRRLYDMVPCVEVQTLKEHTDQVLHLSFSHSGYQFASCSKDCTVKIWNNDLTISL 127

Query: 63  KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
            +S DM+ ++W YTQ+SQFN+ D+LLL SGV  G   S+SGEIAV SL
Sbjct: 128 LHSADMRPYNWSYTQFSQFNQDDSLLLASGVFLGPHNSSSGEIAVISL 175

Substrate recognition component of both SCF (SKP1-CUL1-F-box protein) and DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complexes. Substrate recognition component of the SCF(FBXW5) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of SASS6 during S phase, leading to prevent centriole reduplication. Substrate-specific adapter of the DCX(FBXW5) E3 ubiquitin-protein ligase complex which mediates the polyubiquitination and subsequent degradation of TSC2. May also act as a negative regulator of MAP3K7/TAK1 signaling in the interleukin-1B (IL1B) signaling pathway.
Rattus norvegicus (taxid: 10116)

>sp|Q969U6|FBXW5_HUMAN F-box/WD repeat-containing protein 5 OS=Homo sapiens GN=FBXW5 PE=1 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/108 (52%), Positives = 77/108 (71%)

Query: 3   SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
           SWYEE++RL    P VE + L +HT QVLH+SFSH+G  FA+CSKD  + +W++     +
Sbjct: 68  SWYEEFQRLYDTVPCVEVQTLREHTDQVLHLSFSHSGYQFASCSKDCTVKIWSNDLTISL 127

Query: 63  KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
            +S DM+ ++W YTQ+SQFN+ D+LLL SGV  G   S+SGEIAV SL
Sbjct: 128 LHSADMRPYNWSYTQFSQFNKDDSLLLASGVFLGPHNSSSGEIAVISL 175

Substrate recognition component of both SCF (SKP1-CUL1-F-box protein) and DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complexes. Substrate recognition component of the SCF(FBXW5) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of SASS6 during S phase, leading to prevent centriole reduplication. Substrate-specific adapter of the DCX(FBXW5) E3 ubiquitin-protein ligase complex which mediates the polyubiquitination and subsequent degradation of TSC2. May also act as a negative regulator of MAP3K7/TAK1 signaling in the interleukin-1B (IL1B) signaling pathway.

Homo sapiens (taxid: 9606)

>sp|Q9QXW2|FBXW5_MOUSE F-box/WD repeat-containing protein 5 OS=Mus musculus GN=Fbxw5 PE=1 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/108 (52%), Positives = 76/108 (70%)

Query: 3   SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
           SWYEE++RL    P VE + L +HT QVLH+SFSH+G  FA+CSKD  + +W +     +
Sbjct: 68  SWYEEFRRLYDMVPCVEVQTLKEHTDQVLHLSFSHSGYQFASCSKDCTVKIWNNDLTISL 127

Query: 63  KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
            +S DM+ ++W YTQ+SQFN+ D+LLL SGV  G   S+SGEIAV SL
Sbjct: 128 LHSADMRPYNWSYTQFSQFNQDDSLLLASGVFLGPHNSSSGEIAVISL 175

Substrate recognition component of both SCF (SKP1-CUL1-F-box protein) and DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complexes. Substrate recognition component of the SCF(FBXW5) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of SASS6 during S phase, leading to prevent centriole reduplication. Substrate-specific adapter of the DCX(FBXW5) E3 ubiquitin-protein ligase complex which mediates the polyubiquitination and subsequent degradation of TSC2. May also act as a negative regulator of MAP3K7/TAK1 signaling in the interleukin-1B (IL1B) signaling pathway.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
270008330	627	hypothetical protein TcasGA2_TC030756 [T	0.990	0.175	0.763	3e-46
189237257	629	PREDICTED: similar to CG9144 CG9144-PA [	0.990	0.174	0.763	3e-46
350409711	676	PREDICTED: F-box/WD repeat-containing pr	0.990	0.162	0.8	3e-46
380028091	699	PREDICTED: F-box/WD repeat-containing pr	0.990	0.157	0.790	7e-46
328781430	670	PREDICTED: f-box/WD repeat-containing pr	0.990	0.164	0.790	8e-46
307170835	677	F-box/WD repeat-containing protein 5 [Ca	0.990	0.162	0.781	8e-46
322783222	671	hypothetical protein SINV_06875 [Solenop	0.990	0.163	0.781	1e-45
332028257	683	F-box/WD repeat-containing protein 5 [Ac	0.990	0.161	0.781	2e-45
307204112	675	F-box/WD repeat-containing protein 5 [Ha	0.990	0.162	0.763	2e-44
340718611	676	PREDICTED: f-box/WD repeat-containing pr	0.990	0.162	0.736	7e-43

>gi|270008330|gb|EFA04778.1| hypothetical protein TcasGA2_TC030756 [Tribolium castaneum]

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 99/110 (90%)

Query: 1   KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS 60
           +++WYEE+KRL Y+ P+V+TE L  H HQVLHVSFSHNG+YFATCSKDGY+L+W S+YP 
Sbjct: 61  ERTWYEEFKRLSYNVPVVQTETLHDHRHQVLHVSFSHNGKYFATCSKDGYVLLWNSTYPV 120

Query: 61  KVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
           ++KYS DM +FSWKYTQYSQFNESDTLLLVSGVHFGTP STSGEIAVF+L
Sbjct: 121 EIKYSRDMNSFSWKYTQYSQFNESDTLLLVSGVHFGTPHSTSGEIAVFNL 170

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237257|ref|XP_001812039.1| PREDICTED: similar to CG9144 CG9144-PA [Tribolium castaneum]

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 99/110 (90%)

Query: 1   KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS 60
           +++WYEE+KRL Y+ P+V+TE L  H HQVLHVSFSHNG+YFATCSKDGY+L+W S+YP 
Sbjct: 61  ERTWYEEFKRLSYNVPVVQTETLHDHRHQVLHVSFSHNGKYFATCSKDGYVLLWNSTYPV 120

Query: 61  KVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
           ++KYS DM +FSWKYTQYSQFNESDTLLLVSGVHFGTP STSGEIAVF+L
Sbjct: 121 EIKYSRDMNSFSWKYTQYSQFNESDTLLLVSGVHFGTPHSTSGEIAVFNL 170

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409711|ref|XP_003488822.1| PREDICTED: F-box/WD repeat-containing protein 5-like [Bombus impatiens]

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/110 (80%), Positives = 95/110 (86%)

Query: 1   KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS 60
           K SW  E+KRL YHTP++ETEVL +H+HQVLHVSFSHNG+ FATCSKDGYI VW S YP 
Sbjct: 99  KTSWLGEFKRLTYHTPLLETEVLKEHSHQVLHVSFSHNGKMFATCSKDGYIFVWKSQYPV 158

Query: 61  KVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
            VKY HDMKTFSWKYTQ+SQFN SDTLLLVSGVHFGTP STSGEIAVF L
Sbjct: 159 SVKYLHDMKTFSWKYTQFSQFNSSDTLLLVSGVHFGTPLSTSGEIAVFRL 208

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028091|ref|XP_003697745.1| PREDICTED: F-box/WD repeat-containing protein 5-like [Apis florea]

 Score =  187 bits (475), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 87/110 (79%), Positives = 95/110 (86%)

Query: 1   KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS 60
           K SW  E+KRL YHTP++ETEVL +H+HQVLHVSFSHNG+ FATCSKDGYI VW S YP 
Sbjct: 98  KTSWLGEFKRLTYHTPLLETEVLKEHSHQVLHVSFSHNGKMFATCSKDGYIFVWESQYPV 157

Query: 61  KVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
            +KY HDMKTFSWKYTQ+SQFN SDTLLLVSGVHFGTP STSGEIAVF L
Sbjct: 158 SIKYLHDMKTFSWKYTQFSQFNSSDTLLLVSGVHFGTPLSTSGEIAVFRL 207

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781430|ref|XP_395619.4| PREDICTED: f-box/WD repeat-containing protein 5-like [Apis mellifera]

 Score =  187 bits (474), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 87/110 (79%), Positives = 95/110 (86%)

Query: 1   KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS 60
           K SW  E+KRL YHTP++ETEVL +H+HQVLHVSFSHNG+ FATCSKDGYI VW S YP 
Sbjct: 97  KTSWLGEFKRLTYHTPLLETEVLKEHSHQVLHVSFSHNGKMFATCSKDGYIFVWESQYPV 156

Query: 61  KVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
            +KY HDMKTFSWKYTQ+SQFN SDTLLLVSGVHFGTP STSGEIAVF L
Sbjct: 157 SIKYLHDMKTFSWKYTQFSQFNSSDTLLLVSGVHFGTPLSTSGEIAVFRL 206

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170835|gb|EFN62946.1| F-box/WD repeat-containing protein 5 [Camponotus floridanus]

 Score =  187 bits (474), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/110 (78%), Positives = 96/110 (87%)

Query: 1   KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS 60
           K SW  E+KRL YHTP++ETEVL +H+HQVLHVSFSHNG+ FATCSKDGYILVW S YP 
Sbjct: 98  KTSWLGEFKRLAYHTPLIETEVLKEHSHQVLHVSFSHNGKMFATCSKDGYILVWQSQYPV 157

Query: 61  KVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
            +KY HDMKTFSWKYTQ+SQFN +DTLLLVSGVHFGTP STSGEIAVF +
Sbjct: 158 TIKYLHDMKTFSWKYTQFSQFNCTDTLLLVSGVHFGTPHSTSGEIAVFKI 207

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322783222|gb|EFZ10808.1| hypothetical protein SINV_06875 [Solenopsis invicta]

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/110 (78%), Positives = 96/110 (87%)

Query: 1   KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS 60
           K SW  E+KRL YHTP++ETEVL +H+HQVLHVSFSHNG+ FATCSKDGYILVW S YP 
Sbjct: 97  KTSWLGEFKRLAYHTPLIETEVLKEHSHQVLHVSFSHNGKMFATCSKDGYILVWQSQYPV 156

Query: 61  KVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
            +KY HDMKTFSWKYTQ+SQFN +DTLLLVSGVHFGTP STSGEIAVF +
Sbjct: 157 TIKYLHDMKTFSWKYTQFSQFNCTDTLLLVSGVHFGTPHSTSGEIAVFRV 206

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028257|gb|EGI68304.1| F-box/WD repeat-containing protein 5 [Acromyrmex echinatior]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/110 (78%), Positives = 96/110 (87%)

Query: 1   KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS 60
           K SW  E+KRL YHTP++ETEVL +H+HQVLHVSFSHNG+ FATCSKDGYILVW S YP 
Sbjct: 105 KTSWLGEFKRLAYHTPLIETEVLKEHSHQVLHVSFSHNGKMFATCSKDGYILVWQSQYPV 164

Query: 61  KVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
            +KY HDMKTFSWKYTQ+SQFN +DTLLLVSGVHFGTP STSGEIAVF +
Sbjct: 165 TIKYWHDMKTFSWKYTQFSQFNCTDTLLLVSGVHFGTPHSTSGEIAVFRV 214

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204112|gb|EFN82981.1| F-box/WD repeat-containing protein 5 [Harpegnathos saltator]

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 95/110 (86%)

Query: 1   KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS 60
           K SW  E+KRL YHTP++ETEVL +H+HQVLHVSFSHNG+ FATCSKDGYI VW S +P 
Sbjct: 98  KMSWLGEFKRLAYHTPLIETEVLKEHSHQVLHVSFSHNGKMFATCSKDGYIFVWQSQHPV 157

Query: 61  KVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
            +KY HDMKTFSWKYTQ+SQFN +DTLLLVSGVHFGTP STSGEIAVF +
Sbjct: 158 TIKYLHDMKTFSWKYTQFSQFNCTDTLLLVSGVHFGTPHSTSGEIAVFRV 207

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718611|ref|XP_003397758.1| PREDICTED: f-box/WD repeat-containing protein 5-like [Bombus terrestris]

 Score =  177 bits (449), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 81/110 (73%), Positives = 94/110 (85%)

Query: 1   KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS 60
           K SW  E+KRL YHTP++ETE+L +H+HQVLHVSFSHNG+ FATCSKDGYI VW S YP 
Sbjct: 99  KTSWLGEFKRLTYHTPLLETEILKEHSHQVLHVSFSHNGKMFATCSKDGYIFVWKSQYPV 158

Query: 61  KVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
            VKY HDMKTF+WKYTQ+S+FN SDTLLLVSGV+ GTP +T+GEIAVF L
Sbjct: 159 SVKYLHDMKTFNWKYTQFSEFNSSDTLLLVSGVNSGTPLTTTGEIAVFRL 208

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
FB|FBgn0031773	656	Fbw5 [Drosophila melanogaster	0.981	0.166	0.655	2.8e-38
UNIPROTKB|F1RVZ3	497	FBXW5 "Uncharacterized protein	0.972	0.217	0.537	2.9e-28
UNIPROTKB|Q28BQ8	558	fbxw5 "F-box and WD-40 domain	0.981	0.195	0.568	7.2e-28
UNIPROTKB|Q969U6	566	FBXW5 "F-box/WD repeat-contain	0.963	0.189	0.541	4.5e-27
RGD|1305661	569	Fbxw5 "F-box and WD repeat dom	0.972	0.189	0.527	4.6e-27
MGI|MGI:1354731	573	Fbxw5 "F-box and WD-40 domain	0.972	0.188	0.527	4.7e-27
UNIPROTKB|E1B9Q1	565	FBXW5 "Uncharacterized protein	0.972	0.191	0.518	2.1e-26
UNIPROTKB|F1NV19	506	FBXW5 "Uncharacterized protein	0.972	0.213	0.5	2.7e-26
UNIPROTKB|F1NV20	510	FBXW5 "Uncharacterized protein	0.972	0.211	0.5	2.8e-26
ZFIN|ZDB-GENE-040426-2571	597	fbxw5 "F-box and WD-40 domain	0.972	0.180	0.504	4.8e-24

FB|FBgn0031773 Fbw5 [Drosophila melanogaster (taxid:7227)]

 Score = 414 (150.8 bits), Expect = 2.8e-38, P = 2.8e-38
 Identities = 76/116 (65%), Positives = 90/116 (77%)

Query:     2 KSWYEEYKRLDYHTPIVETEVLTQ-------HTHQVLHVSFSHNGRYFATCSKDGYILVW 54
             +SW  EYKRL  H P V+ + L         HTHQVLHVSF+HNG  FATCSKDGY+++W
Sbjct:    97 ESWRAEYKRLSMHIPFVQAQRLEPTVENNHGHTHQVLHVSFAHNGEMFATCSKDGYVIIW 156

Query:    55 TSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
              + +P   KY+H+MK FSWKY+QYSQFN+SDTLLLVSGVHFG+PQSTSGEIAVF L
Sbjct:   157 NAQHPCSEKYAHNMKQFSWKYSQYSQFNQSDTLLLVSGVHFGSPQSTSGEIAVFYL 212

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1RVZ3 FBXW5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 318 (117.0 bits), Expect = 2.9e-28, P = 2.9e-28
 Identities = 58/108 (53%), Positives = 77/108 (71%)

Query:     3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
             SWYEE++RL    P VE + LT+HT QVLH+SFSH+G  FA+CSKD  + +W +     +
Sbjct:    78 SWYEEFRRLYDRVPCVEVQTLTEHTDQVLHLSFSHSGYQFASCSKDCTVKIWNNDLTISL 137

Query:    63 KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
              +S DM+ ++W YTQ+SQFN+ D+LLL SGV  G   S+SGEIAV SL
Sbjct:   138 LHSADMRPYNWSYTQFSQFNQDDSLLLASGVFLGPHNSSSGEIAVISL 185

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

GO:0051298 "centrosome duplication" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q28BQ8 fbxw5 "F-box and WD-40 domain protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 317 (116.6 bits), Expect = 7.2e-28, P = 7.2e-28
 Identities = 62/109 (56%), Positives = 78/109 (71%)

Query:     2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK 61
             +SWYEE++R+    P VE + L +H  QVLH+SFSH+G  FA+CSKD  I VW S+ P  
Sbjct:    67 ESWYEEFQRVCDAVPRVEAQRLREHGDQVLHISFSHSGDLFASCSKDCTIKVWASAPPIS 126

Query:    62 VKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
             V++S DMK   W YTQ+SQFN  D+LLLVSGV  G   S++GEIAVFSL
Sbjct:   127 VRHSADMKPHHWSYTQFSQFNSDDSLLLVSGVFVGPHNSSAGEIAVFSL 175

GO:0005737 "cytoplasm" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0051298 "centrosome duplication" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q969U6 FBXW5 "F-box/WD repeat-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 310 (114.2 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 59/109 (54%), Positives = 79/109 (72%)

Query:     3 SWYEEYKRLDYHT-PIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK 61
             SWYEE++RL Y T P VE + L +HT QVLH+SFSH+G  FA+CSKD  + +W++     
Sbjct:    68 SWYEEFQRL-YDTVPCVEVQTLREHTDQVLHLSFSHSGYQFASCSKDCTVKIWSNDLTIS 126

Query:    62 VKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
             + +S DM+ ++W YTQ+SQFN+ D+LLL SGV  G   S+SGEIAV SL
Sbjct:   127 LLHSADMRPYNWSYTQFSQFNKDDSLLLASGVFLGPHNSSSGEIAVISL 175

GO:0003824 "catalytic activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0051298 "centrosome duplication" evidence=IMP

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019901 "protein kinase binding" evidence=IPI

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

RGD|1305661 Fbxw5 "F-box and WD repeat domain containing 5" [Rattus norvegicus (taxid:10116)]

 Score = 310 (114.2 bits), Expect = 4.6e-27, P = 4.6e-27
 Identities = 57/108 (52%), Positives = 76/108 (70%)

Query:     3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
             SWYEE++RL    P VE + L +HT QVLH+SFSH+G  FA+CSKD  + +W +     +
Sbjct:    68 SWYEEFRRLYDMVPCVEVQTLKEHTDQVLHLSFSHSGYQFASCSKDCTVKIWNNDLTISL 127

Query:    63 KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
              +S DM+ ++W YTQ+SQFN+ D+LLL SGV  G   S+SGEIAV SL
Sbjct:   128 LHSADMRPYNWSYTQFSQFNQDDSLLLASGVFLGPHNSSSGEIAVISL 175

GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS

GO:0016567 "protein ubiquitination" evidence=IEA;ISO;ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA;ISO;ISS

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO;ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0051298 "centrosome duplication" evidence=IEA;ISO;ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA;ISO;ISS

MGI|MGI:1354731 Fbxw5 "F-box and WD-40 domain protein 5" [Mus musculus (taxid:10090)]

 Score = 310 (114.2 bits), Expect = 4.7e-27, P = 4.7e-27
 Identities = 57/108 (52%), Positives = 76/108 (70%)

Query:     3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
             SWYEE++RL    P VE + L +HT QVLH+SFSH+G  FA+CSKD  + +W +     +
Sbjct:    68 SWYEEFRRLYDMVPCVEVQTLKEHTDQVLHLSFSHSGYQFASCSKDCTVKIWNNDLTISL 127

Query:    63 KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
              +S DM+ ++W YTQ+SQFN+ D+LLL SGV  G   S+SGEIAV SL
Sbjct:   128 LHSADMRPYNWSYTQFSQFNQDDSLLLASGVFLGPHNSSSGEIAVISL 175

GO:0005737 "cytoplasm" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0051298 "centrosome duplication" evidence=ISO

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

UNIPROTKB|E1B9Q1 FBXW5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 304 (112.1 bits), Expect = 2.1e-26, P = 2.1e-26
 Identities = 56/108 (51%), Positives = 76/108 (70%)

Query:     3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV 62
             SW+EE++RL    P VE + L +HT QVLH+SFSH+G  FA+CSKD  + +W +     +
Sbjct:    68 SWFEEFRRLYDAVPCVEVQTLREHTDQVLHLSFSHSGYQFASCSKDCTVKIWNNDPTISL 127

Query:    63 KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
              +S DM+ ++W YTQ+SQFN+ D+LLL SGV  G   S+SGEIAV SL
Sbjct:   128 LHSADMRPYNWSYTQFSQFNQDDSLLLASGVFLGPHNSSSGEIAVISL 175

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

GO:0051298 "centrosome duplication" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1NV19 FBXW5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 301 (111.0 bits), Expect = 2.7e-26, P = 2.7e-26
 Identities = 55/110 (50%), Positives = 80/110 (72%)

Query:     3 SWYEEYKRLDYHT-PIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK 61
             SWY+E++RL Y T P +E + L +H  QVLH+SFSH+G  FA+CSKD  + +W++     
Sbjct:    67 SWYDEFQRL-YDTIPCIEVQALKEHNDQVLHLSFSHSGCLFASCSKDCTVKIWSNELDIS 125

Query:    62 VKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ 111
             +++S +M+ ++W YTQ+SQFN  D+LLLVSGV  G   S+SGEIAV S++
Sbjct:   126 LQHSSNMRPYNWSYTQFSQFNSDDSLLLVSGVFVGPHNSSSGEIAVISME 175

GO:0005737 "cytoplasm" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0051298 "centrosome duplication" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

UNIPROTKB|F1NV20 FBXW5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 301 (111.0 bits), Expect = 2.8e-26, P = 2.8e-26
 Identities = 55/110 (50%), Positives = 80/110 (72%)

Query:     3 SWYEEYKRLDYHT-PIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK 61
             SWY+E++RL Y T P +E + L +H  QVLH+SFSH+G  FA+CSKD  + +W++     
Sbjct:    71 SWYDEFQRL-YDTIPCIEVQALKEHNDQVLHLSFSHSGCLFASCSKDCTVKIWSNELDIS 129

Query:    62 VKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ 111
             +++S +M+ ++W YTQ+SQFN  D+LLLVSGV  G   S+SGEIAV S++
Sbjct:   130 LQHSSNMRPYNWSYTQFSQFNSDDSLLLVSGVFVGPHNSSSGEIAVISME 179

GO:0005737 "cytoplasm" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0051298 "centrosome duplication" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

ZFIN|ZDB-GENE-040426-2571 fbxw5 "F-box and WD-40 domain protein 5" [Danio rerio (taxid:7955)]

 Score = 283 (104.7 bits), Expect = 4.8e-24, P = 4.8e-24
 Identities = 56/111 (50%), Positives = 73/111 (65%)

Query:     3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW-TSSYPSK 61
             SWY E+KRL    P VE + L +H  QVLH++FSH G  F++CSKD  + +W T      
Sbjct:    66 SWYREFKRLYDCIPCVEVQTLKEHHDQVLHLAFSHRGHRFSSCSKDCTVKLWDTEQSDGT 125

Query:    62 VKYSHD--MKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL 110
             +   H   M+ ++W YTQ+SQFN  DTLLLVSGV+ G   S++GEIAVFSL
Sbjct:   126 ISLVHSCSMRQYNWGYTQFSQFNADDTLLLVSGVYLGPHHSSAGEIAVFSL 176

GO:0003674 "molecular_function" evidence=ND

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0051298 "centrosome duplication" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q969U6	FBXW5_HUMAN	No assigned EC number	0.5277	0.9729	0.1908	yes	N/A
Q9QXW2	FBXW5_MOUSE	No assigned EC number	0.5277	0.9729	0.1884	yes	N/A
Q4KLI9	FBXW5_RAT	No assigned EC number	0.5277	0.9729	0.1898	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	111
smart00320	40	smart00320, WD40, WD40 repeats	4e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.002

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 4e-07
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
           L  HT  V  V+FS +G+Y A+ S DG I +W
Sbjct: 7  TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.0 bits (99), Expect = 9e-07
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
           L  HT  V  V+FS +G   A+ S DG + VW
Sbjct: 6  TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 22  VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
            L  HT  V  V+FS +G + A+ S+DG I +W
Sbjct: 130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 19  ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
               LT HT  V  V+FS +GR  ++ S+D  I VW
Sbjct: 85  CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 12 DYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
          D  T  +    L  HT  V  V+ S +G Y A+ S D  I +W
Sbjct: 37 DLETGELLR-TLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 22  VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
            L  H + V  V+FS +G   A+ S+DG I VW
Sbjct: 214 TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 22  VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
            LT HT +V  V+FS +G    + S DG I +W
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
KOG0279|consensus	315		99.87
KOG0272|consensus	459		99.85
KOG0271|consensus	480		99.85
KOG0263|consensus	707		99.84
KOG0272|consensus	459		99.84
KOG0266|consensus	456		99.82
KOG0279|consensus	315		99.81
KOG0277|consensus	311		99.81
KOG0286|consensus	343		99.79
KOG0315|consensus	311		99.78
KOG0266|consensus	456		99.78
KOG0647|consensus	347		99.77
PTZ00421	493	coronin; Provisional	99.77
KOG0285|consensus	460		99.77
PTZ00421	493	coronin; Provisional	99.75
KOG0302|consensus	440		99.75
KOG0295|consensus	406		99.74
KOG0271|consensus	480		99.74
KOG0286|consensus	343		99.74
KOG0282|consensus	503		99.73
KOG0273|consensus	524		99.73
KOG0313|consensus	423		99.72
KOG0283|consensus	712		99.72
KOG0263|consensus	707		99.72
PLN00181	793	protein SPA1-RELATED; Provisional	99.71
KOG0273|consensus	524		99.71
KOG0315|consensus	311		99.7
KOG0291|consensus	893		99.7
PTZ00420	568	coronin; Provisional	99.7
KOG0264|consensus	422		99.7
KOG0319|consensus	775		99.7
PTZ00420	568	coronin; Provisional	99.7
KOG0292|consensus	1202		99.69
KOG0269|consensus	839		99.69
KOG0265|consensus	338		99.68
KOG0264|consensus	422		99.67
KOG0276|consensus	794		99.66
KOG0316|consensus	307		99.66
KOG0645|consensus	312		99.65
KOG0276|consensus	794		99.64
KOG0295|consensus	406		99.64
KOG0292|consensus	1202		99.64
KOG0285|consensus	460		99.64
KOG0772|consensus	641		99.63
KOG0284|consensus	464		99.63
KOG0269|consensus	839		99.63
KOG0275|consensus	508		99.63
KOG0284|consensus	464		99.62
KOG0277|consensus	311		99.62
KOG0281|consensus	499		99.62
KOG0645|consensus	312		99.62
KOG0281|consensus	499		99.61
KOG0310|consensus	487		99.61
KOG0319|consensus	775		99.61
KOG0282|consensus	503		99.59
KOG0278|consensus	334		99.59
KOG0294|consensus	362		99.58
KOG0300|consensus	481		99.56
KOG1034|consensus	385		99.56
KOG0291|consensus	893		99.56
KOG1446|consensus	311		99.56
KOG0313|consensus	423		99.55
KOG0283|consensus	712		99.55
KOG1407|consensus	313		99.55
KOG1332|consensus	299		99.55
KOG0318|consensus	603		99.55
KOG0310|consensus	487		99.54
KOG0305|consensus	484		99.53
KOG0316|consensus	307		99.53
KOG0265|consensus	338		99.53
KOG2110|consensus	391		99.53
KOG0302|consensus	440		99.52
KOG0268|consensus	433		99.51
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.5
KOG0274|consensus	537		99.5
KOG1407|consensus	313		99.5
KOG4283|consensus	397		99.49
KOG0293|consensus	519		99.49
KOG0289|consensus	506		99.49
KOG0289|consensus	506		99.49
KOG1036|consensus	323		99.48
KOG1539|consensus	910		99.48
KOG1445|consensus	1012		99.48
KOG0274|consensus	537		99.48
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.48
KOG0290|consensus	364		99.47
PLN00181	793	protein SPA1-RELATED; Provisional	99.47
KOG0293|consensus	519		99.47
KOG0303|consensus	472		99.46
KOG0267|consensus	825		99.45
KOG0643|consensus	327		99.45
KOG0321|consensus	720		99.45
KOG1273|consensus	405		99.44
KOG0303|consensus	472		99.44
KOG2111|consensus	346		99.44
KOG0305|consensus	484		99.43
KOG0772|consensus	641		99.43
KOG0318|consensus	603		99.43
KOG0267|consensus	825		99.43
KOG0306|consensus	888		99.42
KOG0296|consensus	399		99.42
KOG0270|consensus	463		99.42
KOG0275|consensus	508		99.41
KOG4283|consensus	397		99.41
KOG2445|consensus	361		99.4
KOG1274|consensus	933		99.39
KOG0973|consensus	942		99.39
KOG2394|consensus	636		99.39
KOG0306|consensus	888		99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.37
KOG0308|consensus	735		99.37
KOG0641|consensus	350		99.37
KOG1539|consensus	910		99.37
KOG0640|consensus	430		99.36
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.36
KOG0643|consensus	327		99.36
KOG0288|consensus	459		99.35
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.34
KOG0278|consensus	334		99.34
KOG1188|consensus	376		99.34
KOG0270|consensus	463		99.33
KOG4378|consensus	673		99.33
KOG2096|consensus	420		99.32
KOG0973|consensus	942		99.31
KOG0296|consensus	399		99.31
KOG0308|consensus	735		99.28
KOG1009|consensus	434		99.27
KOG0299|consensus	479		99.27
KOG0321|consensus	720		99.26
KOG0288|consensus	459		99.26
KOG1036|consensus	323		99.25
KOG0301|consensus	745		99.23
KOG1007|consensus	370		99.22
KOG0642|consensus	577		99.21
KOG0307|consensus	1049		99.21
KOG0294|consensus	362		99.2
KOG0301|consensus	745		99.2
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.2
KOG0647|consensus	347		99.2
KOG1332|consensus	299		99.19
KOG1310|consensus	758		99.19
KOG1063|consensus	764		99.18
KOG0268|consensus	433		99.18
KOG1272|consensus	545		99.17
KOG1408|consensus	1080		99.17
KOG1445|consensus	1012		99.17
KOG4378|consensus	673		99.16
KOG0640|consensus	430		99.16
KOG0639|consensus	705		99.16
KOG2048|consensus	691		99.13
KOG1007|consensus	370		99.13
KOG0641|consensus	350		99.12
KOG0649|consensus	325		99.12
KOG1310|consensus	758		99.11
KOG2919|consensus	406		99.1
KOG0646|consensus	476		99.09
KOG1538|consensus	1081		99.09
KOG1034|consensus	385		99.09
KOG0300|consensus	481		99.08
KOG0322|consensus	323		99.07
KOG0646|consensus	476		99.07
KOG1273|consensus	405		99.07
KOG0299|consensus	479		99.05
KOG4328|consensus	498		99.05
KOG2394|consensus	636		99.04
KOG1446|consensus	311		99.04
COG2319	466	FOG: WD40 repeat [General function prediction only	99.03
KOG2919|consensus	406		99.03
KOG1272|consensus	545		99.02
KOG2096|consensus	420		98.99
KOG0322|consensus	323		98.98
KOG2048|consensus	691		98.96
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.96
KOG0280|consensus	339		98.95
KOG4328|consensus	498		98.93
KOG1524|consensus	737		98.93
KOG0650|consensus	733		98.92
KOG0639|consensus	705		98.91
KOG0771|consensus	398		98.9
KOG1274|consensus	933		98.89
KOG0290|consensus	364		98.89
KOG0307|consensus	1049		98.88
KOG0644|consensus	1113		98.86
KOG2055|consensus	514		98.85
KOG1188|consensus	376		98.85
KOG2055|consensus	514		98.84
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.83
KOG2445|consensus	361		98.82
KOG0650|consensus	733		98.81
KOG1408|consensus	1080		98.81
PRK01742	429	tolB translocation protein TolB; Provisional	98.79
KOG2111|consensus	346		98.79
COG2319	466	FOG: WD40 repeat [General function prediction only	98.77
KOG3914|consensus	390		98.75
KOG0974|consensus	967		98.75
KOG1063|consensus	764		98.74
KOG0974|consensus	967		98.73
KOG2106|consensus	626		98.7
KOG1524|consensus	737		98.67
KOG1517|consensus	1387		98.67
KOG3881|consensus	412		98.63
KOG1963|consensus	792		98.61
KOG1587|consensus	555		98.61
KOG2139|consensus	445		98.6
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.59
KOG2106|consensus	626		98.58
KOG1523|consensus	361		98.57
KOG4547|consensus	541		98.57
PRK11028	330	6-phosphogluconolactonase; Provisional	98.57
KOG4227|consensus	609		98.56
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.54
KOG1587|consensus	555		98.52
KOG1240|consensus	1431		98.51
KOG1009|consensus	434		98.47
KOG4227|consensus	609		98.47
KOG1064|consensus	2439		98.46
KOG0644|consensus	1113		98.45
KOG1517|consensus	1387		98.45
KOG2110|consensus	391		98.45
PRK05137	435	tolB translocation protein TolB; Provisional	98.43
KOG0771|consensus	398		98.42
PRK11028	330	6-phosphogluconolactonase; Provisional	98.42
KOG4497|consensus	447		98.39
KOG2139|consensus	445		98.38
PRK04922	433	tolB translocation protein TolB; Provisional	98.35
PRK01742	429	tolB translocation protein TolB; Provisional	98.33
KOG0649|consensus	325		98.33
PRK02889	427	tolB translocation protein TolB; Provisional	98.33
KOG0280|consensus	339		98.32
KOG2321|consensus	703		98.31
KOG1963|consensus	792		98.29
KOG2315|consensus	566		98.29
KOG4532|consensus	344		98.26
KOG2321|consensus	703		98.25
KOG1240|consensus	1431		98.23
PRK03629	429	tolB translocation protein TolB; Provisional	98.21
KOG0642|consensus	577		98.15
KOG1523|consensus	361		98.15
KOG1409|consensus	404		98.14
KOG4190|consensus	1034		98.13
KOG1645|consensus	463		98.11
KOG1064|consensus	2439		98.06
PRK00178	430	tolB translocation protein TolB; Provisional	98.04
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.03
KOG2695|consensus	425		97.98
PRK05137	435	tolB translocation protein TolB; Provisional	97.96
KOG1334|consensus	559		97.94
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.94
KOG2315|consensus	566		97.91
KOG4547|consensus	541		97.87
KOG4714|consensus	319		97.87
PRK03629	429	tolB translocation protein TolB; Provisional	97.86
PRK04922	433	tolB translocation protein TolB; Provisional	97.83
KOG2695|consensus	425		97.8
KOG4714|consensus	319		97.79
PRK02889	427	tolB translocation protein TolB; Provisional	97.79
KOG3881|consensus	412		97.78
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.78
KOG1354|consensus	433		97.76
PRK04792	448	tolB translocation protein TolB; Provisional	97.75
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.73
KOG0309|consensus	1081		97.72
KOG1538|consensus	1081		97.68
COG4946	668	Uncharacterized protein related to the periplasmic	97.66
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.63
KOG3914|consensus	390		97.6
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.58
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.53
KOG1409|consensus	404		97.53
KOG4190|consensus	1034		97.52
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.49
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.48
PRK01029	428	tolB translocation protein TolB; Provisional	97.42
KOG0309|consensus	1081		97.42
PRK00178	430	tolB translocation protein TolB; Provisional	97.38
PRK04792	448	tolB translocation protein TolB; Provisional	97.38
KOG4497|consensus	447		97.34
PRK01029	428	tolB translocation protein TolB; Provisional	97.31
KOG1354|consensus	433		97.29
KOG4532|consensus	344		97.17
KOG1334|consensus	559		97.1
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.07
KOG4640|consensus	665		97.03
KOG1275|consensus	1118		97.02
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.97
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.88
KOG1275|consensus	1118		96.85
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.84
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.81
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.75
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.74
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.73
KOG2314|consensus	698		96.72
KOG1832|consensus	1516		96.64
KOG1645|consensus	463		96.61
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.6
COG4946	668	Uncharacterized protein related to the periplasmic	96.58
KOG2079|consensus	1206		96.57
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.46
KOG2314|consensus	698		96.46
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.29
KOG1832|consensus	1516		96.25
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.21
KOG1912|consensus	1062		96.14
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.02
PRK02888	635	nitrous-oxide reductase; Validated	95.79
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.75
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	95.73
KOG0882|consensus	558		95.73
KOG2041|consensus	1189		95.72
KOG1912|consensus	1062		95.66
KOG2041|consensus	1189		95.6
PRK04043	419	tolB translocation protein TolB; Provisional	95.58
PRK02888	635	nitrous-oxide reductase; Validated	95.45
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	95.42
KOG3617|consensus	1416		95.27
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.24
KOG2444|consensus	238		95.23
KOG1008|consensus	783		95.12
KOG4640|consensus	665		95.11
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.11
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	94.96
KOG2066|consensus	846		94.86
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.82
KOG3621|consensus	726		94.77
KOG1008|consensus	783		94.56
KOG2066|consensus	846		94.46
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.2
KOG3617|consensus	1416		94.14
KOG4649|consensus	354		93.99
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	93.95
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.93
KOG2444|consensus	238		93.82
PF12768	281	Rax2: Cortical protein marker for cell polarity	93.7
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	93.49
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	93.22
PRK04043	419	tolB translocation protein TolB; Provisional	93.2
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	92.96
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	92.78
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	92.66
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	92.32
KOG2114|consensus	933		92.31
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	92.25
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	92.04
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	92.02
KOG2395|consensus	644		92.0
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.9
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.19
KOG1920|consensus	1265		91.07
KOG2079|consensus	1206		90.92
KOG0882|consensus	558		90.71
KOG2395|consensus	644		90.35
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	89.71
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	89.33
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	89.27
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	89.06
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.82
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	88.5
KOG1920|consensus	1265		87.88
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	87.87
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	87.85
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	87.34
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	87.33
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	87.31
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	87.26
KOG1916|consensus	1283		86.69
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	86.49
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.35
KOG3621|consensus	726		86.17
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	85.64
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	85.55
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	83.24
KOG2114|consensus	933		82.66
KOG3630|consensus	1405		82.44
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	80.48
KOG2377|consensus	657		80.17
COG3391	381	Uncharacterized conserved protein [Function unknow	80.05

>KOG0279|consensus

Probab=99.87  E-value=3.1e-21  Score=115.50  Aligned_cols=100  Identities=23%  Similarity=0.316  Sum_probs=83.8

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +.+||+++++||..+++....|.+|...|.+++|++|.+.|++|+.|++|++|+........-.... .  -.-++++.|
T Consensus        80 S~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~-~--~~WVscvrf  156 (315)
T KOG0279|consen   80 SASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDS-H--REWVSCVRF  156 (315)
T ss_pred             eccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCC-C--cCcEEEEEE
Confidence            5789999999999999999999999999999999999999999999999999999876554311111 0  134678899


Q ss_pred             ccCC-CEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESD-TLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~-~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|.. +.+++++       +.|++|++||++
T Consensus       157 sP~~~~p~Ivs~-------s~DktvKvWnl~  180 (315)
T KOG0279|consen  157 SPNESNPIIVSA-------SWDKTVKVWNLR  180 (315)
T ss_pred             cCCCCCcEEEEc-------cCCceEEEEccC
Confidence            9964 6667777       999999999985

>KOG0272|consensus

Probab=99.85  E-value=1.2e-21  Score=122.42  Aligned_cols=99  Identities=19%  Similarity=0.194  Sum_probs=85.8

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +|+++|.+=++||++++..+...+||...|.+++|.|||.++++|+.|..-+|||++++.+...    ......++..|+
T Consensus       277 ~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~----L~gH~k~I~~V~  352 (459)
T KOG0272|consen  277 GTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF----LAGHIKEILSVA  352 (459)
T ss_pred             eecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE----ecccccceeeEe
Confidence            4789999999999999999999999999999999999999999999999999999999877652    111235667788


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..+ ++|       +.|++++|||+|
T Consensus       353 fsPNGy~l-ATg-------s~Dnt~kVWDLR  375 (459)
T KOG0272|consen  353 FSPNGYHL-ATG-------SSDNTCKVWDLR  375 (459)
T ss_pred             ECCCceEE-eec-------CCCCcEEEeeec
Confidence            99999776 566       889999999986

>KOG0271|consensus

Probab=99.85  E-value=3.8e-21  Score=119.44  Aligned_cols=100  Identities=20%  Similarity=0.256  Sum_probs=85.0

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-----eecceeeeecCc
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-----YSHDMKTFSWKY   75 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-----~~~~~~~~~~~~   75 (111)
                      |+++.|.++|+||..+..+..+.++|...|.|++|+|||..|++|+.|+.|++||.+++....     |...|.+++|.|
T Consensus       131 ~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep  210 (480)
T KOG0271|consen  131 VTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEP  210 (480)
T ss_pred             EecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecc
Confidence            578899999999999999999999999999999999999999999999999999998865443     777888888875


Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .   -..|+.. .++++       +.||.|+|||+.
T Consensus       211 ~---hl~p~~r-~las~-------skDg~vrIWd~~  235 (480)
T KOG0271|consen  211 L---HLVPPCR-RLASS-------SKDGSVRIWDTK  235 (480)
T ss_pred             c---ccCCCcc-ceecc-------cCCCCEEEEEcc
Confidence            3   2344555 45666       899999999963

>KOG0263|consensus

Probab=99.84  E-value=1.9e-20  Score=123.69  Aligned_cols=99  Identities=24%  Similarity=0.345  Sum_probs=83.0

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ||++.|.+||+||+.+|..++.|.||.+.|.+++|||+|++|++|++|+.|++||+.++.....   ..... +.+.++.
T Consensus       551 aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~---l~~Ht-~ti~Sls  626 (707)
T KOG0263|consen  551 ATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ---LKGHT-GTIYSLS  626 (707)
T ss_pred             ccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh---hhccc-CceeEEE
Confidence            6889999999999999999999999999999999999999999999999999999998765441   11111 3455678


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+.++..+ ++|       +.|+.|++||+.
T Consensus       627 FS~dg~vL-asg-------g~DnsV~lWD~~  649 (707)
T KOG0263|consen  627 FSRDGNVL-ASG-------GADNSVRLWDLT  649 (707)
T ss_pred             EecCCCEE-Eec-------CCCCeEEEEEch
Confidence            88888776 555       789999999973

>KOG0272|consensus

Probab=99.84  E-value=1.7e-20  Score=117.31  Aligned_cols=99  Identities=21%  Similarity=0.266  Sum_probs=86.2

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +|++.|..-+|||++++.++..|.+|.+.|..++|+|+|..|+||+.|.+++|||++......   .+..+. +.+..|.
T Consensus       319 ~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly---~ipAH~-nlVS~Vk  394 (459)
T KOG0272|consen  319 ATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY---TIPAHS-NLVSQVK  394 (459)
T ss_pred             eccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---eccccc-chhhheE
Confidence            578899999999999999999999999999999999999999999999999999999766544   244333 4566789


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      |+|....+++++       +.|++++||.-
T Consensus       395 ~~p~~g~fL~Ta-------syD~t~kiWs~  417 (459)
T KOG0272|consen  395 YSPQEGYFLVTA-------SYDNTVKIWST  417 (459)
T ss_pred             ecccCCeEEEEc-------ccCcceeeecC
Confidence            999788888888       99999999964

>KOG0266|consensus

Probab=99.82  E-value=4.1e-19  Score=115.95  Aligned_cols=99  Identities=23%  Similarity=0.280  Sum_probs=82.3

Q ss_pred             CcccccCeeeecCC-CCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           1 KKSWYEEYKRLDYH-TPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         1 ~~~~~d~~i~iw~~-~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      ++++.|++++|||+ ..+..+..+.+|...|++++|+|+++++++|+.|++|++||++++.+...   ...+. .+++.+
T Consensus       219 ~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~---l~~hs-~~is~~  294 (456)
T KOG0266|consen  219 LSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK---LKGHS-DGISGL  294 (456)
T ss_pred             EEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe---eeccC-CceEEE
Confidence            46789999999999 55588999999999999999999999999999999999999998766541   22221 456678


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|++++..+++ +       +.|+.|+|||+.
T Consensus       295 ~f~~d~~~l~s-~-------s~d~~i~vwd~~  318 (456)
T KOG0266|consen  295 AFSPDGNLLVS-A-------SYDGTIRVWDLE  318 (456)
T ss_pred             EECCCCCEEEE-c-------CCCccEEEEECC
Confidence            88999888754 4       679999999974

>KOG0279|consensus

Probab=99.81  E-value=2.9e-19  Score=107.13  Aligned_cols=96  Identities=16%  Similarity=0.209  Sum_probs=81.6

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +.++|+++++||++..+...++.+|++.+..+.+||||.++++|+.|+.+.+||++..+.++....     ..+++.++|
T Consensus       167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a-----~~~v~sl~f  241 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA-----FDIVNSLCF  241 (315)
T ss_pred             EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC-----CCeEeeEEe
Confidence            578999999999999999999999999999999999999999999999999999998776653221     246678899


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|....++.         ..+..|+|||+.
T Consensus       242 spnrywL~~---------at~~sIkIwdl~  262 (315)
T KOG0279|consen  242 SPNRYWLCA---------ATATSIKIWDLE  262 (315)
T ss_pred             cCCceeEee---------ccCCceEEEecc
Confidence            999877765         346669999974

>KOG0277|consensus

Probab=99.81  E-value=6.2e-19  Score=104.84  Aligned_cols=95  Identities=15%  Similarity=0.284  Sum_probs=79.8

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCC-ceee---eecceeeeecCce
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYP-SKVK---YSHDMKTFSWKYT   76 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~-~~~~---~~~~~~~~~~~~~   76 (111)
                      +|+||++||+|+....+.+.++.+|...|+...|+|. .+++++++.|+.+++||++.. +.+.   |..++.       
T Consensus       122 tsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil-------  194 (311)
T KOG0277|consen  122 TSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEIL-------  194 (311)
T ss_pred             eeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeE-------
Confidence            6899999999999999999999999999999999995 899999999999999999763 3222   333444       


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                       ++.|+.-...++++|       +.|+.|++||+|
T Consensus       195 -~cdw~ky~~~vl~Tg-------~vd~~vr~wDir  221 (311)
T KOG0277|consen  195 -CCDWSKYNHNVLATG-------GVDNLVRGWDIR  221 (311)
T ss_pred             -eecccccCCcEEEec-------CCCceEEEEehh
Confidence             455566777888888       899999999986

>KOG0286|consensus

Probab=99.79  E-value=2.1e-18  Score=104.15  Aligned_cols=98  Identities=18%  Similarity=0.193  Sum_probs=83.8

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      |++.|.++.+||+++++.+..|.+|.+.|.+++++| +++.+++|+.|+..++||++.+.+.+.   ..... +-++.|+
T Consensus       161 T~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt---F~ghe-sDINsv~  236 (343)
T KOG0286|consen  161 TGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT---FEGHE-SDINSVR  236 (343)
T ss_pred             ecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEe---ecccc-cccceEE
Confidence            789999999999999999999999999999999999 899999999999999999998766541   11111 3456788


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |.|++..+ ++|       +.|+++++||+|
T Consensus       237 ffP~G~af-atG-------SDD~tcRlyDlR  259 (343)
T KOG0286|consen  237 FFPSGDAF-ATG-------SDDATCRLYDLR  259 (343)
T ss_pred             EccCCCee-eec-------CCCceeEEEeec
Confidence            89888775 677       899999999987

>KOG0315|consensus

Probab=99.78  E-value=2.9e-18  Score=101.80  Aligned_cols=93  Identities=25%  Similarity=0.325  Sum_probs=78.1

Q ss_pred             cCeeeecCCCCce--eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           6 EEYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         6 d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..+||+||++++.  ++.++++|++.|..+.|..+|+++.+|++||+++|||++...+..    ..... +|+++|..+|
T Consensus        60 ~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR----~~~~~-spVn~vvlhp  134 (311)
T KOG0315|consen   60 NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR----NYQHN-SPVNTVVLHP  134 (311)
T ss_pred             CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch----hccCC-CCcceEEecC
Confidence            4689999999874  688999999999999999999999999999999999999855443    22222 6788899999


Q ss_pred             CCCEEEEeccccCCccccCceEEEeecC
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .+..|++ |       ..++.|+|||++
T Consensus       135 nQteLis-~-------dqsg~irvWDl~  154 (311)
T KOG0315|consen  135 NQTELIS-G-------DQSGNIRVWDLG  154 (311)
T ss_pred             CcceEEe-e-------cCCCcEEEEEcc
Confidence            9888765 3       678899999985

>KOG0266|consensus

Probab=99.78  E-value=4.9e-18  Score=110.94  Aligned_cols=100  Identities=21%  Similarity=0.232  Sum_probs=84.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce--eeeecceeeeecC-cee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK--VKYSHDMKTFSWK-YTQ   77 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~-~~~   77 (111)
                      +++++|++|+|||++.++++..+.+|.+.|.+++|+++++.|++++.|+.|++||+.++..  ...   +...... +++
T Consensus       262 ~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~  338 (456)
T KOG0266|consen  262 VSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL---LSGAENSAPVT  338 (456)
T ss_pred             EEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec---ccCCCCCCcee
Confidence            4678999999999999999999999999999999999999999999999999999998773  331   2222223 577


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .++|+|++.++++.        ..|+.+++||++
T Consensus       339 ~~~fsp~~~~ll~~--------~~d~~~~~w~l~  364 (456)
T KOG0266|consen  339 SVQFSPNGKYLLSA--------SLDRTLKLWDLR  364 (456)
T ss_pred             EEEECCCCcEEEEe--------cCCCeEEEEEcc
Confidence            89999999998764        578899999975

>KOG0647|consensus

Probab=99.77  E-value=1.6e-18  Score=105.02  Aligned_cols=97  Identities=16%  Similarity=0.166  Sum_probs=77.5

Q ss_pred             CcccccCeeeecCCCC-ceeee-eeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee---eecceeeeecCc
Q psy8803           1 KKSWYEEYKRLDYHTP-IVETE-VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK---YSHDMKTFSWKY   75 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~-~~~~~-~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~~~   75 (111)
                      +.++||++||+|++.. +..+. ....|++.|.+++|+.||..+++++.|+.+++||+.+++...   |...++.+.|. 
T Consensus        44 ~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv-  122 (347)
T KOG0647|consen   44 AAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWV-  122 (347)
T ss_pred             EecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEe-
Confidence            4689999999999975 33332 224589999999999999999999999999999999876543   66667666663 


Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                            .+....++++|       +.|.+|++||+|
T Consensus       123 ------~~~~~~cl~TG-------SWDKTlKfWD~R  145 (347)
T KOG0647|consen  123 ------PGMNYQCLVTG-------SWDKTLKFWDTR  145 (347)
T ss_pred             ------cCCCcceeEec-------ccccceeecccC
Confidence                  22335678999       999999999986

>PTZ00421 coronin; Provisional

Probab=99.77  E-value=1.3e-17  Score=109.54  Aligned_cols=104  Identities=14%  Similarity=0.164  Sum_probs=80.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.|++|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||++++.....   .....-.....+.
T Consensus       142 aSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t---l~~H~~~~~~~~~  218 (493)
T PTZ00421        142 ASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS---VEAHASAKSQRCL  218 (493)
T ss_pred             EEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE---EecCCCCcceEEE
Confidence            3678899999999999998889999999999999999999999999999999999998765431   1111101123456


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |.++...++++|..  .  +.|+.|++||++
T Consensus       219 w~~~~~~ivt~G~s--~--s~Dr~VklWDlr  245 (493)
T PTZ00421        219 WAKRKDLIITLGCS--K--SQQRQIMLWDTR  245 (493)
T ss_pred             EcCCCCeEEEEecC--C--CCCCeEEEEeCC
Confidence            77887787766511  1  358899999985

>KOG0285|consensus

Probab=99.77  E-value=3e-18  Score=106.05  Aligned_cols=95  Identities=16%  Similarity=0.192  Sum_probs=81.6

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~   76 (111)
                      |+++.|++++|||+.++++..++.||-..|..+++|+...+++++++|+.++.||++..+.+.    |..        .+
T Consensus       167 ~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS--------~V  238 (460)
T KOG0285|consen  167 ATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS--------GV  238 (460)
T ss_pred             EecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccc--------ee
Confidence            588999999999999999999999999999999999999999999999999999999876554    433        44


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .+++.+|....+ ++|       +.|.+++|||+|
T Consensus       239 ~~L~lhPTldvl-~t~-------grDst~RvWDiR  265 (460)
T KOG0285|consen  239 YCLDLHPTLDVL-VTG-------GRDSTIRVWDIR  265 (460)
T ss_pred             EEEeccccceeE-Eec-------CCcceEEEeeec
Confidence            455667777665 555       789999999987

>PTZ00421 coronin; Provisional

Probab=99.75  E-value=1.9e-17  Score=108.73  Aligned_cols=99  Identities=17%  Similarity=0.099  Sum_probs=78.7

Q ss_pred             CcccccCeeeecCCCCc-------eeeeeeecccccEEEEEEcCCC-cEEEEEeCCCeEEEEecCCCceeeeecceeeee
Q psy8803           1 KKSWYEEYKRLDYHTPI-------VETEVLTQHTHQVLHVSFSHNG-RYFATCSKDGYILVWTSSYPSKVKYSHDMKTFS   72 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~   72 (111)
                      ++++.|++|++||+..+       .++..+.+|...|.+++|+|++ ++|++++.|+.|++||++.......   +... 
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~---l~~h-  167 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV---IKCH-  167 (493)
T ss_pred             EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE---EcCC-
Confidence            46789999999999754       3567788999999999999985 7999999999999999987654431   1111 


Q ss_pred             cCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          73 WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      -..+++++|+|++..+ +++       +.|+.|+|||+|
T Consensus       168 ~~~V~sla~spdG~lL-atg-------s~Dg~IrIwD~r  198 (493)
T PTZ00421        168 SDQITSLEWNLDGSLL-CTT-------SKDKKLNIIDPR  198 (493)
T ss_pred             CCceEEEEEECCCCEE-EEe-------cCCCEEEEEECC
Confidence            1456788899988765 555       789999999975

>KOG0302|consensus

Probab=99.75  E-value=9.8e-18  Score=104.17  Aligned_cols=100  Identities=12%  Similarity=0.190  Sum_probs=76.9

Q ss_pred             CcccccCeeeecCCCCce--eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeec--Cce
Q psy8803           1 KKSWYEEYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSW--KYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~--~~~   76 (111)
                      |+.+-||+|+|||++.+.  .....++|.+-|.-|.|+.+-.+|++|+.||+++|||++..+...   ++....+  .|+
T Consensus       274 aScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~---pVA~fk~Hk~pI  350 (440)
T KOG0302|consen  274 ASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ---PVATFKYHKAPI  350 (440)
T ss_pred             EeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC---cceeEEeccCCe
Confidence            456789999999999872  222338899999999999887799999999999999998743321   2222111  577


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +++.|+|.+...++++       +.|.+|.||||
T Consensus       351 tsieW~p~e~s~iaas-------g~D~QitiWDl  377 (440)
T KOG0302|consen  351 TSIEWHPHEDSVIAAS-------GEDNQITIWDL  377 (440)
T ss_pred             eEEEeccccCceEEec-------cCCCcEEEEEe
Confidence            7888899766666666       78999999997

>KOG0295|consensus

Probab=99.74  E-value=4.7e-17  Score=100.69  Aligned_cols=97  Identities=19%  Similarity=0.281  Sum_probs=83.0

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +.+.|++|++||+.++.++.+|.+|...|..++|+|.|++|+++.+|+++++||+++.+++..   .. ..-..++++.|
T Consensus       309 s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~---~~-ah~hfvt~lDf  384 (406)
T KOG0295|consen  309 SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT---LE-AHEHFVTSLDF  384 (406)
T ss_pred             eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec---cC-CCcceeEEEec
Confidence            468999999999999999999999999999999999999999999999999999999888862   11 11245677788


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +....+ +++|       +-|.++++|.=
T Consensus       385 h~~~p~-VvTG-------sVdqt~KvwEc  405 (406)
T KOG0295|consen  385 HKTAPY-VVTG-------SVDQTVKVWEC  405 (406)
T ss_pred             CCCCce-EEec-------cccceeeeeec
Confidence            877765 5777       89999999964

>KOG0271|consensus

Probab=99.74  E-value=7.6e-18  Score=105.01  Aligned_cols=93  Identities=15%  Similarity=0.246  Sum_probs=80.4

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~   76 (111)
                      |+.++|..|++|+-++|+.+..|.||-..|+.++|+.|.++|++|+.|.++++|++++.+...    |..++.++.|   
T Consensus       383 ASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDw---  459 (480)
T KOG0271|consen  383 ASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDW---  459 (480)
T ss_pred             EEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEe---
Confidence            578999999999999999999999999999999999999999999999999999999865433    5556665555   


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                           +|++..+ ++|       +.|..+++|.
T Consensus       460 -----spDG~rV-~sg-------gkdkv~~lw~  479 (480)
T KOG0271|consen  460 -----SPDGQRV-ASG-------GKDKVLRLWR  479 (480)
T ss_pred             -----cCCCcee-ecC-------CCceEEEeec
Confidence                 6677664 666       7899999995

>KOG0286|consensus

Probab=99.74  E-value=3.4e-17  Score=99.04  Aligned_cols=98  Identities=19%  Similarity=0.162  Sum_probs=82.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-eecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~v~   80 (111)
                      +++-|++.+|||++.+.++.+|.+|++.|..+.|.|+|.-|++|++|+++++||++..+.+. +..   .....++++++
T Consensus       204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~---~~~~~gitSv~  280 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH---DSIICGITSVA  280 (343)
T ss_pred             ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc---CcccCCceeEE
Confidence            56779999999999999999999999999999999999999999999999999999876554 211   11126788999


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      |+..+.+|++ |       -.|..+.+||.
T Consensus       281 FS~SGRlLfa-g-------y~d~~c~vWDt  302 (343)
T KOG0286|consen  281 FSKSGRLLFA-G-------YDDFTCNVWDT  302 (343)
T ss_pred             EcccccEEEe-e-------ecCCceeEeec
Confidence            9999988765 3       46788999984

>KOG0282|consensus

Probab=99.73  E-value=6.6e-18  Score=107.30  Aligned_cols=98  Identities=14%  Similarity=0.219  Sum_probs=85.3

Q ss_pred             cccccCeeeecCCCC-ceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTP-IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +++.|+.|+||++.. +.++.++.+|...|..++|+++|.-|++++-|+.+++||.+++++....    .. -..+.++.
T Consensus       232 S~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f----~~-~~~~~cvk  306 (503)
T KOG0282|consen  232 SGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF----HL-DKVPTCVK  306 (503)
T ss_pred             ecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEE----ec-CCCceeee
Confidence            578999999999986 7899999999999999999999999999999999999999998876511    11 14566889


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..++.+|       ..|+.|+.||+|
T Consensus       307 f~pd~~n~fl~G-------~sd~ki~~wDiR  330 (503)
T KOG0282|consen  307 FHPDNQNIFLVG-------GSDKKIRQWDIR  330 (503)
T ss_pred             cCCCCCcEEEEe-------cCCCcEEEEecc
Confidence            999998888888       889999999987

>KOG0273|consensus

Probab=99.73  E-value=2.7e-17  Score=104.45  Aligned_cols=104  Identities=19%  Similarity=0.305  Sum_probs=94.1

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee----eeecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV----KYSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~----~~~~~~~~~~~~~~   76 (111)
                      |+++.|+.|+++.+....++.++.+|.+.|.++.|.|.+.+|++++.|++++||.+......    .|..++..+.|+|.
T Consensus       333 ~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~  412 (524)
T KOG0273|consen  333 ATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT  412 (524)
T ss_pred             eecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC
Confidence            57889999999999999999999999999999999999999999999999999998764333    38889999999999


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..+..+|....+++++       +.|++|++||+.
T Consensus       413 g~v~~n~~~~~~l~sa-------s~dstV~lwdv~  440 (524)
T KOG0273|consen  413 GPVTSNPNMNLMLASA-------SFDSTVKLWDVE  440 (524)
T ss_pred             CCccCCCcCCceEEEe-------ecCCeEEEEEcc
Confidence            9999999888888887       899999999973

>KOG0313|consensus

Probab=99.72  E-value=3.4e-17  Score=101.74  Aligned_cols=99  Identities=15%  Similarity=0.216  Sum_probs=80.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCc--eeeeecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS--KVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v   79 (111)
                      +.+||++|+.||+.++..+.++. ....+.++..+|..++|++|+.|+.|++||.+.+.  ...+  ....+. +.++.+
T Consensus       276 S~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~--s~~gH~-nwVssv  351 (423)
T KOG0313|consen  276 SVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ--SLIGHK-NWVSSV  351 (423)
T ss_pred             eecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE--eeecch-hhhhhe
Confidence            57899999999999999888887 45688999999999999999999999999998752  2221  111111 234567


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .++|...++++++       +.|+++++||+|
T Consensus       352 kwsp~~~~~~~S~-------S~D~t~klWDvR  376 (423)
T KOG0313|consen  352 KWSPTNEFQLVSG-------SYDNTVKLWDVR  376 (423)
T ss_pred             ecCCCCceEEEEE-------ecCCeEEEEEec
Confidence            7788999999999       999999999987

>KOG0283|consensus

Probab=99.72  E-value=7e-17  Score=107.62  Aligned_cols=96  Identities=21%  Similarity=0.259  Sum_probs=80.7

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +++.|.|||||.+....++..|. |...|+|++|+| |.++|++|+.|++++||++...+...    -+.+. .-++.++
T Consensus       385 SSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~----W~Dl~-~lITAvc  458 (712)
T KOG0283|consen  385 SSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD----WNDLR-DLITAVC  458 (712)
T ss_pred             eccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe----ehhhh-hhheeEE
Confidence            68999999999999999998887 999999999999 78999999999999999998766554    12222 4567899


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |.|++... +.|       +..|.+++|+.+
T Consensus       459 y~PdGk~a-vIG-------t~~G~C~fY~t~  481 (712)
T KOG0283|consen  459 YSPDGKGA-VIG-------TFNGYCRFYDTE  481 (712)
T ss_pred             eccCCceE-EEE-------EeccEEEEEEcc
Confidence            99998775 455       789999999853

>KOG0263|consensus

Probab=99.72  E-value=4e-17  Score=108.25  Aligned_cols=99  Identities=24%  Similarity=0.258  Sum_probs=86.1

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ||.+.|++-++|......+.+.+-+|.+.|.|+.|+|+..++++||.|+++++||+.++..+.    +....-.++..++
T Consensus       509 atas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR----iF~GH~~~V~al~  584 (707)
T KOG0263|consen  509 ATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR----IFTGHKGPVTALA  584 (707)
T ss_pred             EecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEE----EecCCCCceEEEE
Confidence            578999999999999899999999999999999999999999999999999999999887765    2222236778899


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|.+.+| ++|       +.|+.|.+||+.
T Consensus       585 ~Sp~Gr~L-aSg-------~ed~~I~iWDl~  607 (707)
T KOG0263|consen  585 FSPCGRYL-ASG-------DEDGLIKIWDLA  607 (707)
T ss_pred             EcCCCceE-eec-------ccCCcEEEEEcC
Confidence            99988775 777       899999999974

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.71  E-value=2.2e-16  Score=108.98  Aligned_cols=99  Identities=18%  Similarity=0.230  Sum_probs=80.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      |+++.||+|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++++.|+.+++||++........   .. . ..+.++
T Consensus       549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~---~~-~-~~v~~v  623 (793)
T PLN00181        549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI---KT-K-ANICCV  623 (793)
T ss_pred             EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE---ec-C-CCeEEE
Confidence            4678899999999999998999999999999999997 7899999999999999999876654421   11 1 245567


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|+++...++++|       +.|+.|++||++
T Consensus       624 ~~~~~~g~~latg-------s~dg~I~iwD~~  648 (793)
T PLN00181        624 QFPSESGRSLAFG-------SADHKVYYYDLR  648 (793)
T ss_pred             EEeCCCCCEEEEE-------eCCCeEEEEECC
Confidence            8876655556777       889999999975

>KOG0273|consensus

Probab=99.71  E-value=1.9e-16  Score=100.66  Aligned_cols=98  Identities=24%  Similarity=0.329  Sum_probs=83.1

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++.++|++|++||+..+.++..|..|+.+|+.++|+|+|+++++|+.|+.+.+|+.+..+.++....-     ..+..++
T Consensus       426 ~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-----~~Ifel~  500 (524)
T KOG0273|consen  426 ASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-----GGIFELC  500 (524)
T ss_pred             EEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-----CeEEEEE
Confidence            46789999999999999999999999999999999999999999999999999999998877632111     2345678


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+..+.++.++.        .|+.+++.|+|
T Consensus       501 Wn~~G~kl~~~~--------sd~~vcvldlr  523 (524)
T KOG0273|consen  501 WNAAGDKLGACA--------SDGSVCVLDLR  523 (524)
T ss_pred             EcCCCCEEEEEe--------cCCCceEEEec
Confidence            888898887654        58889999886

>KOG0315|consensus

Probab=99.70  E-value=1.5e-16  Score=94.66  Aligned_cols=100  Identities=11%  Similarity=0.116  Sum_probs=80.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +++++|.+||+|...+|.+..++.-.++.|..+...||++.|+.++. -.|++||+++......  .-....-..+..|.
T Consensus        14 vsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv--~t~e~h~kNVtaVg   90 (311)
T KOG0315|consen   14 VSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPV--ATFEGHTKNVTAVG   90 (311)
T ss_pred             EeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCce--eEEeccCCceEEEE
Confidence            47899999999999999999999977899999999999999999885 5899999987654320  00111114566788


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |..++..+ .+|       +.||+++|||||
T Consensus        91 F~~dgrWM-yTg-------seDgt~kIWdlR  113 (311)
T KOG0315|consen   91 FQCDGRWM-YTG-------SEDGTVKIWDLR  113 (311)
T ss_pred             EeecCeEE-Eec-------CCCceEEEEecc
Confidence            88888776 666       899999999997

>KOG0291|consensus

Probab=99.70  E-value=1.7e-16  Score=105.59  Aligned_cols=102  Identities=18%  Similarity=0.173  Sum_probs=82.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-----------------
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-----------------   63 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-----------------   63 (111)
                      ||+..||.|++||..++-++.+|..|++.|..+.|+..++.+++++.||+++.||+...+...                 
T Consensus       366 aTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~  445 (893)
T KOG0291|consen  366 ATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP  445 (893)
T ss_pred             EeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC
Confidence            578899999999999999999999999999999999999999999999999999986421110                 


Q ss_pred             -----------------------eecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          64 -----------------------YSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        64 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                                             +.-.+....-+|+.+++|+|.+..+ +++       ++|.+|++||+
T Consensus       446 sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~L-aS~-------SWDkTVRiW~i  507 (893)
T KOG0291|consen  446 SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLL-ASG-------SWDKTVRIWDI  507 (893)
T ss_pred             CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeE-Eec-------cccceEEEEEe
Confidence                                   0001111222467788999999865 777       99999999996

>PTZ00420 coronin; Provisional

Probab=99.70  E-value=6.1e-16  Score=102.79  Aligned_cols=103  Identities=8%  Similarity=0.086  Sum_probs=75.7

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~   76 (111)
                      |+++.|++|+|||+++++.+..+. |...|.+++|+|+|.+|++++.|+.+++||++.+....    |...+....   +
T Consensus       142 aSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~---v  217 (568)
T PTZ00420        142 CSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKN---I  217 (568)
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEE---E
Confidence            357889999999999888777776 66789999999999999999999999999999876543    322221111   1


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ....|++++..++++|.+..    .+++|+|||++
T Consensus       218 ~~~~fs~d~~~IlTtG~d~~----~~R~VkLWDlr  248 (568)
T PTZ00420        218 WIDGLGGDDNYILSTGFSKN----NMREMKLWDLK  248 (568)
T ss_pred             EeeeEcCCCCEEEEEEcCCC----CccEEEEEECC
Confidence            12356778888877761111    13589999985

>KOG0264|consensus

Probab=99.70  E-value=8.6e-17  Score=101.32  Aligned_cols=102  Identities=20%  Similarity=0.307  Sum_probs=81.4

Q ss_pred             CcccccCeeeecCCCCc-------eeeeeeecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCceeeeecceeeee
Q psy8803           1 KKSWYEEYKRLDYHTPI-------VETEVLTQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFS   72 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~   72 (111)
                      ++++.|++|++||+...       .+...+.+|.+.|..++|++ +..+|+++++|+.+.|||.|.. .......+....
T Consensus       194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~  272 (422)
T KOG0264|consen  194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHS  272 (422)
T ss_pred             eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccC
Confidence            46789999999999743       34566789999999999999 4789999999999999999963 211111222222


Q ss_pred             cCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          73 WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                       .++++++|+|-+..++++|       +.|++|++||+|
T Consensus       273 -~~vn~~~fnp~~~~ilAT~-------S~D~tV~LwDlR  303 (422)
T KOG0264|consen  273 -AEVNCVAFNPFNEFILATG-------SADKTVALWDLR  303 (422)
T ss_pred             -CceeEEEeCCCCCceEEec-------cCCCcEEEeech
Confidence             5678899999888999999       999999999987

>KOG0319|consensus

Probab=99.70  E-value=2.1e-16  Score=104.69  Aligned_cols=99  Identities=23%  Similarity=0.317  Sum_probs=82.9

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ||++.|.+.+||++.++.....|.||...|.++.|+|..+.++++|.|++++||.+.+..+++.   ...+. +.+.-+.
T Consensus       479 AT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT---~eGH~-~aVlra~  554 (775)
T KOG0319|consen  479 ATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT---FEGHT-SAVLRAS  554 (775)
T ss_pred             EecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee---ecCcc-ceeEeee
Confidence            6899999999999999999999999999999999999999999999999999999999877761   11111 3344567


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |-..+..++.+        +.||-|++||++
T Consensus       555 F~~~~~qliS~--------~adGliKlWnik  577 (775)
T KOG0319|consen  555 FIRNGKQLISA--------GADGLIKLWNIK  577 (775)
T ss_pred             eeeCCcEEEec--------cCCCcEEEEecc
Confidence            77788887554        579999999974

>PTZ00420 coronin; Provisional

Probab=99.70  E-value=7.6e-16  Score=102.33  Aligned_cols=103  Identities=17%  Similarity=0.180  Sum_probs=79.5

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCce-eee-ecc--eeeeecCce
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSK-VKY-SHD--MKTFSWKYT   76 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~-~~~-~~~--~~~~~~~~~   76 (111)
                      +++.++.+++|+......+..+.+|.+.|.+++|+|+ +++|++|+.|++|++||+..... ... ...  .....-..+
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            3566889999998877888889999999999999997 78999999999999999975321 100 000  011111457


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..++|+|.+..+++++       +.|+.|+|||++
T Consensus       129 ~sVaf~P~g~~iLaSg-------S~DgtIrIWDl~  156 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSS-------GFDSFVNIWDIE  156 (568)
T ss_pred             EEEEECCCCCeEEEEE-------eCCCeEEEEECC
Confidence            7889999988887777       889999999985

>KOG0292|consensus

Probab=99.69  E-value=7.6e-17  Score=109.04  Aligned_cols=98  Identities=17%  Similarity=0.150  Sum_probs=82.7

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +|.-.|.|++||++-+.++..|..|+++|..+.|+|.+.+|++||+|.+|++|+.+..++..   ....+ ..++.++.|
T Consensus        26 tslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf---tL~GH-lDYVRt~~F  101 (1202)
T KOG0292|consen   26 TSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF---TLLGH-LDYVRTVFF  101 (1202)
T ss_pred             EeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh---hhccc-cceeEEeec
Confidence            46678999999999999999999999999999999999999999999999999999876654   11111 246667888


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++.-..|+. +       |.|.+|+|||.+
T Consensus       102 HheyPWIlS-A-------SDDQTIrIWNwq  123 (1202)
T KOG0292|consen  102 HHEYPWILS-A-------SDDQTIRIWNWQ  123 (1202)
T ss_pred             cCCCceEEE-c-------cCCCeEEEEecc
Confidence            988888755 4       899999999975

>KOG0269|consensus

Probab=99.69  E-value=7.9e-17  Score=107.21  Aligned_cols=101  Identities=15%  Similarity=0.185  Sum_probs=78.4

Q ss_pred             cccccCeeeecCCCC-ceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-eecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTP-IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~v   79 (111)
                      +....|.+++||++. .++..++.+|.+.|.|+.|+|++.+||+||.|+.++|||+-+.+... +  .|..+  .|+..|
T Consensus       194 s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~--tInTi--apv~rV  269 (839)
T KOG0269|consen  194 SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH--TINTI--APVGRV  269 (839)
T ss_pred             EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee--EEeec--ceeeee
Confidence            455679999999985 46788889999999999999999999999999999999998654322 2  23332  467788


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|.|...+.++++.     -..|..|+|||+|
T Consensus       270 kWRP~~~~hLAtcs-----mv~dtsV~VWDvr  296 (839)
T KOG0269|consen  270 KWRPARSYHLATCS-----MVVDTSVHVWDVR  296 (839)
T ss_pred             eeccCccchhhhhh-----ccccceEEEEeec
Confidence            88997665555441     2347889999986

>KOG0265|consensus

Probab=99.68  E-value=5.5e-16  Score=94.06  Aligned_cols=99  Identities=14%  Similarity=0.207  Sum_probs=79.8

Q ss_pred             CcccccCeeeecCCC-CceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-eecceeeeecCceee
Q psy8803           1 KKSWYEEYKRLDYHT-PIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFSWKYTQY   78 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~   78 (111)
                      |++++|..|-+|+.. ..+....+++|.+.|..+.|.+|++.+++++.|++++.||++++++.. |...-     ..++.
T Consensus        63 aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~-----~~vNs  137 (338)
T KOG0265|consen   63 ASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT-----SFVNS  137 (338)
T ss_pred             eecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccc-----ceeee
Confidence            688999999999965 446777888999999999999999999999999999999999987665 21111     22333


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.-..-+..++.++       +.|+++++||+|
T Consensus       138 ~~p~rrg~~lv~Sg-------sdD~t~kl~D~R  163 (338)
T KOG0265|consen  138 LDPSRRGPQLVCSG-------SDDGTLKLWDIR  163 (338)
T ss_pred             cCccccCCeEEEec-------CCCceEEEEeec
Confidence            44344667888888       999999999987

>KOG0264|consensus

Probab=99.67  E-value=6.6e-16  Score=97.39  Aligned_cols=99  Identities=16%  Similarity=0.153  Sum_probs=77.8

Q ss_pred             cccccCeeeecCCC--CceeeeeeecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           2 KSWYEEYKRLDYHT--PIVETEVLTQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         2 ~~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      +-+.|+.+.|||.+  +.++...-.+|.+.|.|++|.| ++..||+|+.|+++++||+|+.....|.  ...+. ..+..
T Consensus       245 sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~--~e~H~-dev~~  321 (422)
T KOG0264|consen  245 SVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT--FEGHE-DEVFQ  321 (422)
T ss_pred             eecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee--ccCCC-cceEE
Confidence            34679999999999  5566777789999999999999 5788999999999999999985443221  11111 33456


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      |.|+|....++++.       +.|+.+.|||+
T Consensus       322 V~WSPh~etvLASS-------g~D~rl~vWDl  346 (422)
T KOG0264|consen  322 VEWSPHNETVLASS-------GTDRRLNVWDL  346 (422)
T ss_pred             EEeCCCCCceeEec-------ccCCcEEEEec
Confidence            67788888888888       88999999997

>KOG0276|consensus

Probab=99.66  E-value=1e-15  Score=100.49  Aligned_cols=99  Identities=17%  Similarity=0.123  Sum_probs=87.1

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +++.|..|++|++++++.+..|++|...|++++.+|..-+++++++|..|++||.+......+   .....-..+..++|
T Consensus        72 ~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q---tfeGH~HyVMqv~f  148 (794)
T KOG0276|consen   72 TGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ---TFEGHEHYVMQVAF  148 (794)
T ss_pred             EecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee---EEcCcceEEEEEEe
Confidence            678999999999999999999999999999999999999999999999999999998765542   22222367889999


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +|.+...++++       +-|++|+||.+
T Consensus       149 nPkD~ntFaS~-------sLDrTVKVWsl  170 (794)
T KOG0276|consen  149 NPKDPNTFASA-------SLDRTVKVWSL  170 (794)
T ss_pred             cCCCccceeee-------eccccEEEEEc
Confidence            99888888888       99999999986

>KOG0316|consensus

Probab=99.66  E-value=1e-15  Score=90.59  Aligned_cols=98  Identities=19%  Similarity=0.281  Sum_probs=82.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +...|.++++|+...+.+++++.+|..+|..++.+.|...|++|+.|+.+.+||+.+++...   ..+.+. ..++.|+|
T Consensus        34 tcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~-aqVNtV~f  109 (307)
T KOG0316|consen   34 TCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHL-AQVNTVRF  109 (307)
T ss_pred             EcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeee---eccccc-ceeeEEEe
Confidence            45789999999999999999999999999999999999999999999999999999988765   222222 45667777


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.+. .++++|       +.|.++++||-|
T Consensus       110 Nees-SVv~Sg-------sfD~s~r~wDCR  131 (307)
T KOG0316|consen  110 NEES-SVVASG-------SFDSSVRLWDCR  131 (307)
T ss_pred             cCcc-eEEEec-------cccceeEEEEcc
Confidence            8554 556788       999999999954

>KOG0645|consensus

Probab=99.65  E-value=3.6e-15  Score=89.56  Aligned_cols=93  Identities=23%  Similarity=0.365  Sum_probs=75.6

Q ss_pred             CcccccCeeeecCCCCc--eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce-------eeeecceeee
Q psy8803           1 KKSWYEEYKRLDYHTPI--VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK-------VKYSHDMKTF   71 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~-------~~~~~~~~~~   71 (111)
                      |++++|.++.||.-..+  +++..|+||...|.+++|+++|++||+++.|+.+=||.+.....       ..|.+.+..+
T Consensus        77 a~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V  156 (312)
T KOG0645|consen   77 ASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV  156 (312)
T ss_pred             EEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE
Confidence            56899999999998766  68889999999999999999999999999999999999874322       2255666544


Q ss_pred             ecCceeeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          72 SWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                              .|+|....| +++       +.|++|++|+
T Consensus       157 --------~WHPt~dlL-~S~-------SYDnTIk~~~  178 (312)
T KOG0645|consen  157 --------IWHPTEDLL-FSC-------SYDNTIKVYR  178 (312)
T ss_pred             --------EEcCCccee-EEe-------ccCCeEEEEe
Confidence                    456666554 666       8999999996

>KOG0276|consensus

Probab=99.64  E-value=3.8e-15  Score=97.84  Aligned_cols=95  Identities=22%  Similarity=0.282  Sum_probs=76.9

Q ss_pred             cccccCeeeecCCCCc-eeeeeeecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCcee----eeecceeeeecCc
Q psy8803           2 KSWYEEYKRLDYHTPI-VETEVLTQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPSKV----KYSHDMKTFSWKY   75 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~----~~~~~~~~~~~~~   75 (111)
                      +|+.|-+|++||-..+ .+...|+||+..|++++|.| |.+.+++++.|+++++|.+....+.    .|...        
T Consensus       114 tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekG--------  185 (794)
T KOG0276|consen  114 TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKG--------  185 (794)
T ss_pred             ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccC--------
Confidence            7899999999999865 78889999999999999999 5789999999999999999765432    24444        


Q ss_pred             eeeEEEcc-CCCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNE-SDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +++|.|-+ .+...+++|       +.|..|+|||.+
T Consensus       186 VN~Vdyy~~gdkpylIsg-------aDD~tiKvWDyQ  215 (794)
T KOG0276|consen  186 VNCVDYYTGGDKPYLISG-------ADDLTIKVWDYQ  215 (794)
T ss_pred             cceEEeccCCCcceEEec-------CCCceEEEeecc
Confidence            44555555 444556777       889999999975

>KOG0295|consensus

Probab=99.64  E-value=2.4e-15  Score=93.25  Aligned_cols=99  Identities=15%  Similarity=0.228  Sum_probs=80.2

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCC----------C-----cEEEEEeCCCeEEEEecCCCceeeee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN----------G-----RYFATCSKDGYILVWTSSYPSKVKYS   65 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~----------~-----~~l~s~~~d~~i~iw~~~~~~~~~~~   65 (111)
                      |+.+.|.++++|-..++++...+..|+..|.|++|.|+          +     +.+++++.|++|++||+.++.++.. 
T Consensus       251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t-  329 (406)
T KOG0295|consen  251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT-  329 (406)
T ss_pred             EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE-
Confidence            56789999999999999888889999999999999773          2     4889999999999999999876641 


Q ss_pred             cceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          66 HDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        66 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                        ...+. +.+..++|+|.+.+|+.+        ..|+++++||++
T Consensus       330 --L~ghd-nwVr~~af~p~Gkyi~Sc--------aDDktlrvwdl~  364 (406)
T KOG0295|consen  330 --LVGHD-NWVRGVAFSPGGKYILSC--------ADDKTLRVWDLK  364 (406)
T ss_pred             --Eeccc-ceeeeeEEcCCCeEEEEE--------ecCCcEEEEEec
Confidence              22222 345567889999887665        579999999985

>KOG0292|consensus

Probab=99.64  E-value=1.9e-15  Score=102.46  Aligned_cols=97  Identities=20%  Similarity=0.187  Sum_probs=85.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +++.|..|++|++.+.+++.+|.||...|..+.|++.--+|+++|+|-+|+||+..+..+..    +.....+++.+.+|
T Consensus        68 SGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia----vltGHnHYVMcAqF  143 (1202)
T KOG0292|consen   68 SGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA----VLTGHNHYVMCAQF  143 (1202)
T ss_pred             ecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE----EEecCceEEEeecc
Confidence            57889999999999999999999999999999999999999999999999999999988775    33333467888899


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +|.+..+ +++       |-|.+|+|||+
T Consensus       144 hptEDlI-VSa-------SLDQTVRVWDi  164 (1202)
T KOG0292|consen  144 HPTEDLI-VSA-------SLDQTVRVWDI  164 (1202)
T ss_pred             CCccceE-EEe-------cccceEEEEee
Confidence            9977665 666       89999999996

>KOG0285|consensus

Probab=99.64  E-value=1.2e-15  Score=94.70  Aligned_cols=97  Identities=12%  Similarity=0.121  Sum_probs=80.8

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      .+-|+.|+-||+...+.+..+.||-+.|+|++.+|.-+.|++++.|.++++||+++...+..   ...+. .++..|.+.
T Consensus       211 ~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~---l~GH~-~~V~~V~~~  286 (460)
T KOG0285|consen  211 AGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV---LSGHT-NPVASVMCQ  286 (460)
T ss_pred             ecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE---ecCCC-CcceeEEee
Confidence            45689999999999999999999999999999999999999999999999999998655541   11121 456677888


Q ss_pred             cCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          83 ESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |.+..+ ++|       +.|++|++||++
T Consensus       287 ~~dpqv-it~-------S~D~tvrlWDl~  307 (460)
T KOG0285|consen  287 PTDPQV-ITG-------SHDSTVRLWDLR  307 (460)
T ss_pred             cCCCce-EEe-------cCCceEEEeeec
Confidence            877776 555       899999999985

>KOG0772|consensus

Probab=99.63  E-value=7e-16  Score=99.35  Aligned_cols=101  Identities=16%  Similarity=0.242  Sum_probs=73.5

Q ss_pred             cccccCeeeecCCCCc-eeeeeee-----cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeec--
Q psy8803           2 KSWYEEYKRLDYHTPI-VETEVLT-----QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSW--   73 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~-~~~~~~~-----~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~--   73 (111)
                      |+++||++||||.+.- +....++     +-.-.+..++|++|+.+||+|+.||.|.+|+...... .....+.....  
T Consensus       286 T~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v-~p~~~vk~AH~~g  364 (641)
T KOG0772|consen  286 TCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV-RPVMKVKDAHLPG  364 (641)
T ss_pred             EecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc-ccceEeeeccCCC
Confidence            6789999999999754 3333333     2234677899999999999999999999999864211 10012222222  


Q ss_pred             CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          74 KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..+++++|++++++|+.        ++.|+++++||||
T Consensus       365 ~~Itsi~FS~dg~~LlS--------Rg~D~tLKvWDLr  394 (641)
T KOG0772|consen  365 QDITSISFSYDGNYLLS--------RGFDDTLKVWDLR  394 (641)
T ss_pred             CceeEEEeccccchhhh--------ccCCCceeeeecc
Confidence            25678999999999876        5789999999986

>KOG0284|consensus

Probab=99.63  E-value=9e-16  Score=96.31  Aligned_cols=95  Identities=20%  Similarity=0.232  Sum_probs=81.1

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~   76 (111)
                      ++.+.||+|+|||....++...|.||.-.|.+++|+|...+|++++.|..+++||.+++.++.    |...        +
T Consensus       196 ~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKnt--------V  267 (464)
T KOG0284|consen  196 LTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNT--------V  267 (464)
T ss_pred             EEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccce--------E
Confidence            356899999999999888888899999999999999999999999999999999999987664    3333        3


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..+.|+|.++.| .++       +.|..++++|+|
T Consensus       268 l~~~f~~n~N~L-lt~-------skD~~~kv~DiR  294 (464)
T KOG0284|consen  268 LAVKFNPNGNWL-LTG-------SKDQSCKVFDIR  294 (464)
T ss_pred             EEEEEcCCCCee-EEc-------cCCceEEEEehh
Confidence            456788898766 555       899999999986

>KOG0269|consensus

Probab=99.63  E-value=9.4e-16  Score=102.21  Aligned_cols=93  Identities=13%  Similarity=0.266  Sum_probs=76.9

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCcee-----eeecceeeeecCc
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKV-----KYSHDMKTFSWKY   75 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~-----~~~~~~~~~~~~~   75 (111)
                      +++.||+|++||++..+....+.+....|+.+.|+|. +..|+++.+.|.+.+||++.....     .|.+.        
T Consensus       151 SGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp--------  222 (839)
T KOG0269|consen  151 SGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP--------  222 (839)
T ss_pred             ecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc--------
Confidence            6789999999999999988889888899999999994 899999999999999999975332     24444        


Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +.++.|+|+... +++|       ++|++|+|||+
T Consensus       223 V~c~nwhPnr~~-lATG-------GRDK~vkiWd~  249 (839)
T KOG0269|consen  223 VLCLNWHPNREW-LATG-------GRDKMVKIWDM  249 (839)
T ss_pred             eEEEeecCCCce-eeec-------CCCccEEEEec
Confidence            445556775555 5777       79999999997

>KOG0275|consensus

Probab=99.63  E-value=3e-16  Score=96.69  Aligned_cols=99  Identities=15%  Similarity=0.166  Sum_probs=85.8

Q ss_pred             CcccccCeeeecCCCCceeeeeee-cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLT-QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      |+++.||.|++|-+.+|.++.+|. +|+..|.|+.|+.|+..+++++-|.++++-.++++++.+   +.+... +.++..
T Consensus       279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---EfrGHs-Syvn~a  354 (508)
T KOG0275|consen  279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---EFRGHS-SYVNEA  354 (508)
T ss_pred             hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---HhcCcc-ccccce
Confidence            678999999999999999999997 899999999999999999999999999999999988776   233333 567778


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .|.+++.+++. +       +.|++|++|+.+
T Consensus       355 ~ft~dG~~iis-a-------SsDgtvkvW~~K  378 (508)
T KOG0275|consen  355 TFTDDGHHIIS-A-------SSDGTVKVWHGK  378 (508)
T ss_pred             EEcCCCCeEEE-e-------cCCccEEEecCc
Confidence            89999988765 3       789999999863

>KOG0284|consensus

Probab=99.62  E-value=6.9e-16  Score=96.81  Aligned_cols=95  Identities=20%  Similarity=0.268  Sum_probs=81.2

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee----eeecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV----KYSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~----~~~~~~~~~~~~~~   76 (111)
                      |+++.|..|++||.+++.++.++.+|...|..+.|.+++++|+++|.|..++++|++..+.+    .|...+.++.    
T Consensus       238 asgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~----  313 (464)
T KOG0284|consen  238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLT----  313 (464)
T ss_pred             EEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeec----
Confidence            56788999999999999999999999999999999999999999999999999999953322    2555555555    


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                          ++|-...|+++|       +.|+.|.+|.+
T Consensus       314 ----WhP~~~~lftsg-------g~Dgsvvh~~v  336 (464)
T KOG0284|consen  314 ----WHPLNESLFTSG-------GSDGSVVHWVV  336 (464)
T ss_pred             ----cccccccceeec-------cCCCceEEEec
Confidence                467777888998       89999999975

>KOG0277|consensus

Probab=99.62  E-value=1.1e-15  Score=91.22  Aligned_cols=100  Identities=15%  Similarity=0.151  Sum_probs=79.1

Q ss_pred             CcccccCeeeecCCCC-ceeeeeeecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           1 KKSWYEEYKRLDYHTP-IVETEVLTQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      |+.+.|+++++||++. |+.+. ++.|+.++.++.|+. +.+.+++++.|+.|+.||++..+....  ..+... -.++.
T Consensus       164 as~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~--eL~gh~-~AVRk  239 (311)
T KOG0277|consen  164 ASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF--ELNGHG-LAVRK  239 (311)
T ss_pred             EEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccce--eecCCc-eEEEE
Confidence            4578899999999974 56555 899999999999988 688999999999999999987543211  122222 24567


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|+|....+++++       +.|=+++|||..
T Consensus       240 vk~Sph~~~lLaSa-------sYDmT~riw~~~  265 (311)
T KOG0277|consen  240 VKFSPHHASLLASA-------SYDMTVRIWDPE  265 (311)
T ss_pred             EecCcchhhHhhhc-------cccceEEecccc
Confidence            78899888888888       999999999963

>KOG0281|consensus

Probab=99.62  E-value=1.5e-15  Score=94.30  Aligned_cols=90  Identities=18%  Similarity=0.293  Sum_probs=74.0

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCcee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYTQ   77 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~~   77 (111)
                      ++.-|.+|+|||.++..+...+.||++.|.|+.|.  .+.|++|+.|.++++||.++++...    |...+..+.+    
T Consensus       212 SGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf----  285 (499)
T KOG0281|consen  212 SGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRF----  285 (499)
T ss_pred             cccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEE----
Confidence            57789999999999999999999999999999994  6699999999999999999976553    5555555543    


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                          +  ..++ +++       +.|++|++|||.
T Consensus       286 ----~--ng~m-vtc-------SkDrsiaVWdm~  305 (499)
T KOG0281|consen  286 ----S--NGYM-VTC-------SKDRSIAVWDMA  305 (499)
T ss_pred             ----e--CCEE-EEe-------cCCceeEEEecc
Confidence                2  3344 555       899999999973

>KOG0645|consensus

Probab=99.62  E-value=1.3e-14  Score=87.14  Aligned_cols=104  Identities=19%  Similarity=0.309  Sum_probs=79.6

Q ss_pred             CcccccCeeeecCCCCc---eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecC---
Q psy8803           1 KKSWYEEYKRLDYHTPI---VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWK---   74 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~---   74 (111)
                      ++.+||.+|++|....+   +++..|.+|+..|.++.|++.|+-|+++++|++++||.........|+..+..+.|.   
T Consensus       166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~  245 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGV  245 (312)
T ss_pred             EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeecccc
Confidence            46799999999998733   789999999999999999999999999999999999985442222222222222221   


Q ss_pred             ------------------------------------ceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          75 ------------------------------------YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        75 ------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                                                          -+++|+++|....+++++       +.||.|++|.++
T Consensus       246 IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~-------~DDG~v~~W~l~  311 (312)
T KOG0645|consen  246 IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASG-------GDDGIVNFWELE  311 (312)
T ss_pred             eEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeec-------CCCceEEEEEec
Confidence                                                247899999666667777       889999999874

>KOG0281|consensus

Probab=99.61  E-value=6.5e-16  Score=95.83  Aligned_cols=90  Identities=17%  Similarity=0.271  Sum_probs=76.3

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCcee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYTQ   77 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~~   77 (111)
                      +.+.|.++++|++.+++.+..+.+|...|-|+.+  .++++++|+.|.+|++||++.+.++.    |..-++++.+    
T Consensus       335 sASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF----  408 (499)
T KOG0281|consen  335 SASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF----  408 (499)
T ss_pred             EecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee----
Confidence            5788999999999999999999999999999877  59999999999999999999876543    6556666654    


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                            +... +++|       ..||+|+|||++
T Consensus       409 ------d~kr-IVSG-------aYDGkikvWdl~  428 (499)
T KOG0281|consen  409 ------DNKR-IVSG-------AYDGKIKVWDLQ  428 (499)
T ss_pred             ------cCce-eeec-------cccceEEEEecc
Confidence                  4445 4777       899999999974

>KOG0310|consensus

Probab=99.61  E-value=9.9e-15  Score=93.09  Aligned_cols=95  Identities=17%  Similarity=0.155  Sum_probs=76.1

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCc-eeeeecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPS-KVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v   79 (111)
                      +++.|+.+++||+.+...+..+.+|+..|.|.+|+|. +.++++||.||+|++||++... ...   +..+  -.|+..+
T Consensus       128 s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~---elnh--g~pVe~v  202 (487)
T KOG0310|consen  128 SGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV---ELNH--GCPVESV  202 (487)
T ss_pred             ecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE---EecC--CCceeeE
Confidence            5678899999999988766688999999999999995 6799999999999999998752 222   1111  1456678


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .|-|.+..++.+|         .+.|+|||+
T Consensus       203 l~lpsgs~iasAg---------Gn~vkVWDl  224 (487)
T KOG0310|consen  203 LALPSGSLIASAG---------GNSVKVWDL  224 (487)
T ss_pred             EEcCCCCEEEEcC---------CCeEEEEEe
Confidence            8888988887754         778999997

>KOG0319|consensus

Probab=99.61  E-value=4.2e-15  Score=98.68  Aligned_cols=93  Identities=18%  Similarity=0.253  Sum_probs=81.2

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~   76 (111)
                      ||++.|.||+||.+.+..++.+|+||+..|..+.|-.++..|++++.||.+++|++++..+..    |..+++.+.-   
T Consensus       521 aT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~---  597 (775)
T KOG0319|consen  521 ATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSV---  597 (775)
T ss_pred             EeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEee---
Confidence            688999999999999999999999999999999999999999999999999999999987664    7777876653   


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                           ++... ++++|       +.|+.|.+|.
T Consensus       598 -----~~~~~-~~~tg-------g~Dg~i~~wk  617 (775)
T KOG0319|consen  598 -----SPLLD-MFVTG-------GGDGRIIFWK  617 (775)
T ss_pred             -----cCccc-eeEec-------CCCeEEEEee
Confidence                 44444 66777       8899999994

>KOG0282|consensus

Probab=99.59  E-value=6.5e-15  Score=93.95  Aligned_cols=97  Identities=10%  Similarity=0.074  Sum_probs=77.9

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCC-cEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNG-RYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++|+++++||.++|+++.+|. ....+.|+.|.||+ +.+++|+.|++|+.||+++++.++.    ......+++.+.
T Consensus       275 S~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe----Yd~hLg~i~~i~  349 (503)
T KOG0282|consen  275 SASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE----YDRHLGAILDIT  349 (503)
T ss_pred             eeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH----HHhhhhheeeeE
Confidence            67899999999999999999886 45678899999987 8899999999999999999876541    111124555677


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |-+.+..++. .       +.|+.++||+.+
T Consensus       350 F~~~g~rFis-s-------SDdks~riWe~~  372 (503)
T KOG0282|consen  350 FVDEGRRFIS-S-------SDDKSVRIWENR  372 (503)
T ss_pred             EccCCceEee-e-------ccCccEEEEEcC
Confidence            8888888755 3       788999999864

>KOG0278|consensus

Probab=99.59  E-value=2e-14  Score=85.87  Aligned_cols=96  Identities=19%  Similarity=0.259  Sum_probs=68.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC----------------------
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP----------------------   59 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~----------------------   59 (111)
                      +|.+|++||+||.+++..+..+. ....|..+..+++|++|.++- .+.|++||..+.                      
T Consensus       160 SSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~  237 (334)
T KOG0278|consen  160 SSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKE  237 (334)
T ss_pred             eeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCccccccccccCCCc
Confidence            46899999999999998888876 455667777777777665443 356677766542                      


Q ss_pred             -------------------ceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          60 -------------------SKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        60 -------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                                         ....   .-+...++|+.+|.|+|++... ++|       +.||+|++|.+
T Consensus       238 ~fVaGged~~~~kfDy~TgeEi~---~~nkgh~gpVhcVrFSPdGE~y-AsG-------SEDGTirlWQt  296 (334)
T KOG0278|consen  238 FFVAGGEDFKVYKFDYNTGEEIG---SYNKGHFGPVHCVRFSPDGELY-ASG-------SEDGTIRLWQT  296 (334)
T ss_pred             eEEecCcceEEEEEeccCCceee---ecccCCCCceEEEEECCCCcee-ecc-------CCCceEEEEEe
Confidence                               2111   1122344688899999999775 777       99999999975

>KOG0294|consensus

Probab=99.58  E-value=2e-14  Score=87.96  Aligned_cols=98  Identities=15%  Similarity=0.161  Sum_probs=79.7

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCC--cEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNG--RYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      |+++.|.+|+|||.+....+..+..|.+.|.++.|.+.-  .+|++|++||.|.+|+.....+..   ...... ..++.
T Consensus        57 aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~---slK~H~-~~Vt~  132 (362)
T KOG0294|consen   57 ASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK---SLKAHK-GQVTD  132 (362)
T ss_pred             eccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee---eecccc-cccce
Confidence            578999999999999999899999999999999999875  489999999999999998876555   222222 23566


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++-+|.+...+..        ++|+.++.|||
T Consensus       133 lsiHPS~KLALsV--------g~D~~lr~WNL  156 (362)
T KOG0294|consen  133 LSIHPSGKLALSV--------GGDQVLRTWNL  156 (362)
T ss_pred             eEecCCCceEEEE--------cCCceeeeehh
Confidence            7778887665554        57999999996

>KOG0300|consensus

Probab=99.56  E-value=1.5e-14  Score=89.11  Aligned_cols=98  Identities=20%  Similarity=0.210  Sum_probs=77.9

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +.+||.+-.+||+++++.+..|.||...+..++-+|..+++++++.|.+.++||++......   .+....-..++++.|
T Consensus       289 TaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV---~VFQGHtdtVTS~vF  365 (481)
T KOG0300|consen  289 TASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSV---AVFQGHTDTVTSVVF  365 (481)
T ss_pred             eeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhccee---eeecccccceeEEEE
Confidence            67999999999999999999999999999999999999999999999999999998421111   111111134456677


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.++..  ++|       +.|.+|+|||||
T Consensus       366 ~~dd~v--VSg-------SDDrTvKvWdLr  386 (481)
T KOG0300|consen  366 NTDDRV--VSG-------SDDRTVKVWDLR  386 (481)
T ss_pred             ecCCce--eec-------CCCceEEEeeec
Confidence            766543  666       899999999986

>KOG1034|consensus

Probab=99.56  E-value=2.6e-14  Score=87.94  Aligned_cols=101  Identities=12%  Similarity=0.099  Sum_probs=83.0

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      .+++-|.|+|.|+.+++....+.+|...|..+.++|+ -+++++++.|..+++|++++..++...+.+-++. ..+.++.
T Consensus       110 ~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr-deVLSvD  188 (385)
T KOG1034|consen  110 AGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR-DEVLSVD  188 (385)
T ss_pred             eecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc-CcEEEEE
Confidence            4568899999999999999999999999999999997 5899999999999999999987765333333332 3456778


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |++++..+ +++       +.|..|.+|++.
T Consensus       189 ~~~~gd~i-~Sc-------GmDhslk~W~l~  211 (385)
T KOG1034|consen  189 FSLDGDRI-ASC-------GMDHSLKLWRLN  211 (385)
T ss_pred             EcCCCCee-ecc-------CCcceEEEEecC
Confidence            89999876 455       689999999974

>KOG0291|consensus

Probab=99.56  E-value=3e-14  Score=95.23  Aligned_cols=95  Identities=17%  Similarity=0.199  Sum_probs=77.7

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      .-|.+-+|+-.+...+.+.++|...+.+++++|||+.+++|++|++++|||...+.+......   +. +.++.+.|+..
T Consensus       328 klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte---Ht-s~Vt~v~f~~~  403 (893)
T KOG0291|consen  328 KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE---HT-SGVTAVQFTAR  403 (893)
T ss_pred             ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc---CC-CceEEEEEEec
Confidence            347899999998888888899999999999999999999999999999999998877652111   11 34556778888


Q ss_pred             CCEEEEeccccCCccccCceEEEeecC
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +..++. .       +-||+|+.||+.
T Consensus       404 g~~lls-s-------SLDGtVRAwDlk  422 (893)
T KOG0291|consen  404 GNVLLS-S-------SLDGTVRAWDLK  422 (893)
T ss_pred             CCEEEE-e-------ecCCeEEeeeec
Confidence            877755 3       789999999974

>KOG1446|consensus

Probab=99.56  E-value=6.9e-14  Score=85.28  Aligned_cols=96  Identities=14%  Similarity=0.133  Sum_probs=76.8

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      ++..|.+||..++.+++.++-|.||...|..++.+|-+..+++++.|+++++||++...+.+.   +..   .....+||
T Consensus        75 Stk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~---l~~---~~~pi~Af  148 (311)
T KOG1446|consen   75 STKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL---LNL---SGRPIAAF  148 (311)
T ss_pred             cCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE---Eec---CCCcceeE
Confidence            456799999999999999999999999999999999999999999999999999997666542   110   11224688


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .|++-.+ +++       .....|+++|+|
T Consensus       149 Dp~GLif-A~~-------~~~~~IkLyD~R  170 (311)
T KOG1446|consen  149 DPEGLIF-ALA-------NGSELIKLYDLR  170 (311)
T ss_pred             CCCCcEE-EEe-------cCCCeEEEEEec
Confidence            8888655 444       444489999986

>KOG0313|consensus

Probab=99.55  E-value=4.6e-14  Score=88.06  Aligned_cols=92  Identities=18%  Similarity=0.252  Sum_probs=75.9

Q ss_pred             CcccccCeeeecCCCCc---eeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCc-ee----eeecceeee
Q psy8803           1 KKSWYEEYKRLDYHTPI---VETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPS-KV----KYSHDMKTF   71 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~-~~----~~~~~~~~~   71 (111)
                      |+++.|.++++||.+.+   .....|.+|+..|..+.|+|. -.+|++++.|+++++||++... ++    .|..++.++
T Consensus       316 ~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v  395 (423)
T KOG0313|consen  316 ASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV  395 (423)
T ss_pred             eecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEE
Confidence            57889999999999865   456678899999999999995 6789999999999999999865 33    377788888


Q ss_pred             ecCceeeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          72 SWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      .|.         .+ .++++|       +.|++|+|+.
T Consensus       396 dW~---------~~-~~IvSG-------GaD~~l~i~~  416 (423)
T KOG0313|consen  396 DWN---------EG-GLIVSG-------GADNKLRIFK  416 (423)
T ss_pred             ecc---------CC-ceEEec-------cCcceEEEec
Confidence            884         44 455777       8899999975

>KOG0283|consensus

Probab=99.55  E-value=1.3e-14  Score=97.02  Aligned_cols=80  Identities=21%  Similarity=0.412  Sum_probs=65.5

Q ss_pred             eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCC
Q psy8803          18 VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGT   97 (111)
Q Consensus        18 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   97 (111)
                      +++..|.||.+.|..+.||. .++|++++.|+++++|++....++.    +..+. ..+++|+|+|-+..++.+|     
T Consensus       360 kP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~----~F~Hn-dfVTcVaFnPvDDryFiSG-----  428 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLK----VFSHN-DFVTCVAFNPVDDRYFISG-----  428 (712)
T ss_pred             cchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceee----EEecC-CeeEEEEecccCCCcEeec-----
Confidence            34566678999999999986 6678899999999999998776665    33332 5788999999776777888     


Q ss_pred             ccccCceEEEeec
Q psy8803          98 PQSTSGEIAVFSL  110 (111)
Q Consensus        98 ~~~~~~~i~iw~~  110 (111)
                        +-|++|+||++
T Consensus       429 --SLD~KvRiWsI  439 (712)
T KOG0283|consen  429 --SLDGKVRLWSI  439 (712)
T ss_pred             --ccccceEEeec
Confidence              99999999986

>KOG1407|consensus

Probab=99.55  E-value=3.9e-14  Score=84.93  Aligned_cols=94  Identities=18%  Similarity=0.307  Sum_probs=80.1

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      ..|+|.|..+...+++..+++|.....||.|+|+|++|++|+.|..+.+||+....+..   .+..+.| |+.++.|+-+
T Consensus       167 GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R---~isRldw-pVRTlSFS~d  242 (313)
T KOG1407|consen  167 GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICER---CISRLDW-PVRTLSFSHD  242 (313)
T ss_pred             CCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhe---eeccccC-ceEEEEeccC
Confidence            45889999999899999999999999999999999999999999999999998766665   3566666 7888889988


Q ss_pred             CCEEEEeccccCCccccCceEEEeec
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +.+| +++       +.|..|-|-++
T Consensus       243 g~~l-ASa-------SEDh~IDIA~v  260 (313)
T KOG1407|consen  243 GRML-ASA-------SEDHFIDIAEV  260 (313)
T ss_pred             ccee-ecc-------CccceEEeEec
Confidence            7665 677       88888877654

>KOG1332|consensus

Probab=99.55  E-value=5.6e-14  Score=83.62  Aligned_cols=100  Identities=22%  Similarity=0.345  Sum_probs=75.2

Q ss_pred             CcccccCeeeecCCCCc---eeeeeeecccccEEEEEEcC--CCcEEEEEeCCCeEEEEecCCCceee-eecceeeeecC
Q psy8803           1 KKSWYEEYKRLDYHTPI---VETEVLTQHTHQVLHVSFSH--NGRYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFSWK   74 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~s~--~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~   74 (111)
                      ||.+.|++|+|+..+.+   +++..|.||.++|..+.|.+  -|.+|++++.|+++.||...+++=.+ +  .-..+. .
T Consensus        27 ATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~--e~~~h~-~  103 (299)
T KOG1332|consen   27 ATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY--EHAAHS-A  103 (299)
T ss_pred             eeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh--hhhhhc-c
Confidence            57899999999999864   56788899999999999955  59999999999999999988752111 1  011111 3


Q ss_pred             ceeeEEEccCCC-EEEEeccccCCccccCceEEEeec
Q psy8803          75 YTQYSQFNESDT-LLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        75 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .+++|+|.|.+. .+++++       +.||.|.|.+.
T Consensus       104 SVNsV~wapheygl~Laca-------sSDG~vsvl~~  133 (299)
T KOG1332|consen  104 SVNSVAWAPHEYGLLLACA-------SSDGKVSVLTY  133 (299)
T ss_pred             cceeecccccccceEEEEe-------eCCCcEEEEEE
Confidence            455667777655 556666       88999999865

>KOG0318|consensus

Probab=99.55  E-value=1.8e-13  Score=88.45  Aligned_cols=102  Identities=19%  Similarity=0.214  Sum_probs=79.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +|.+.|++|-+|+=.+=+-...+..|...|.|+.|+|||..+++.+.|+++.+||=.+++.......-..+. ..+..++
T Consensus       164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHk-GsIfals  242 (603)
T KOG0318|consen  164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHK-GSIFALS  242 (603)
T ss_pred             EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcc-ccEEEEE
Confidence            477889999999866667777778899999999999999999999999999999988876655222111111 2344566


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|+...++++        +.|.+++|||+.
T Consensus       243 WsPDs~~~~T~--------SaDkt~KIWdVs  265 (603)
T KOG0318|consen  243 WSPDSTQFLTV--------SADKTIKIWDVS  265 (603)
T ss_pred             ECCCCceEEEe--------cCCceEEEEEee
Confidence            78899888664        679999999973

>KOG0310|consensus

Probab=99.54  E-value=3.9e-14  Score=90.43  Aligned_cols=99  Identities=15%  Similarity=0.210  Sum_probs=79.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      .+.-.|+|+++|+.+...+..+.+|+.++..+.|+|+ +.++++|++|+.+++||+.+.....   .+.... .++.+.+
T Consensus        85 aGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~---~l~~ht-DYVR~g~  160 (487)
T KOG0310|consen   85 AGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQA---ELSGHT-DYVRCGD  160 (487)
T ss_pred             ccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEE---EecCCc-ceeEeec
Confidence            4556789999998877778888999999999999996 6788889999999999998765421   122222 3555666


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++|...+++++|       +.|+.|++||.|
T Consensus       161 ~~~~~~hivvtG-------sYDg~vrl~DtR  184 (487)
T KOG0310|consen  161 ISPANDHIVVTG-------SYDGKVRLWDTR  184 (487)
T ss_pred             cccCCCeEEEec-------CCCceEEEEEec
Confidence            788888999999       999999999986

>KOG0305|consensus

Probab=99.53  E-value=2.1e-13  Score=88.70  Aligned_cols=102  Identities=13%  Similarity=0.210  Sum_probs=77.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEe--CCCeEEEEecCCCceee---eecceeeeecC
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCS--KDGYILVWTSSYPSKVK---YSHDMKTFSWK   74 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~--~d~~i~iw~~~~~~~~~---~~~~~~~~~~~   74 (111)
                      |++..|..+.|||....+++..+..|...|.+++|+|- ..+||+|+  .|++|++||..++..+.   ....|..+.|+
T Consensus       317 ASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Ws  396 (484)
T KOG0305|consen  317 ASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWS  396 (484)
T ss_pred             ccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEc
Confidence            68899999999999888889999999999999999995 77888874  69999999998754332   11112222222


Q ss_pred             ------------------------------------ceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          75 ------------------------------------YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        75 ------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                                                          .+..++.+|++..+++ |       +.|.++++|++
T Consensus       397 k~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t-~-------a~DETlrfw~~  460 (484)
T KOG0305|consen  397 KKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT-G-------AADETLRFWNL  460 (484)
T ss_pred             CCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE-e-------cccCcEEeccc
Confidence                                                2356789999888744 4       67888999985

>KOG0316|consensus

Probab=99.53  E-value=1.5e-13  Score=81.58  Aligned_cols=93  Identities=15%  Similarity=0.188  Sum_probs=73.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCc--eee----eecceeeeecC
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS--KVK----YSHDMKTFSWK   74 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~--~~~----~~~~~~~~~~~   74 (111)
                      |+..-|..|.+||+.+|+...+|.+|.+.|..+.|..+...+++|+-|.++++||.++..  +.+    ....+..+.  
T Consensus        75 ~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~--  152 (307)
T KOG0316|consen   75 ASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID--  152 (307)
T ss_pred             ccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE--
Confidence            456779999999999999999999999999999999999999999999999999998743  222    111222222  


Q ss_pred             ceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                               -..+.+++|       +.||+++.||+|
T Consensus       153 ---------v~~heIvaG-------S~DGtvRtydiR  173 (307)
T KOG0316|consen  153 ---------VAEHEIVAG-------SVDGTVRTYDIR  173 (307)
T ss_pred             ---------ecccEEEee-------ccCCcEEEEEee
Confidence                     123445666       889999999986

>KOG0265|consensus

Probab=99.53  E-value=7.5e-14  Score=84.94  Aligned_cols=98  Identities=12%  Similarity=0.087  Sum_probs=79.4

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.|+++++||++++..+..++ ....+.++.|..++..+.+|+-|..|++||++.....+.   .... -.+++.+.
T Consensus       149 ~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~---lsGh-~DtIt~ls  223 (338)
T KOG0265|consen  149 CSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT---LSGH-ADTITGLS  223 (338)
T ss_pred             EecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEE---eecc-cCceeeEE
Confidence            367899999999999998888775 567889999999999999999999999999987765552   1111 25666777


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .+|.+..++.        .+.|.++++||+|
T Consensus       224 ls~~gs~lls--------nsMd~tvrvwd~r  246 (338)
T KOG0265|consen  224 LSRYGSFLLS--------NSMDNTVRVWDVR  246 (338)
T ss_pred             eccCCCcccc--------ccccceEEEEEec
Confidence            8888887755        3899999999986

>KOG2110|consensus

Probab=99.53  E-value=6.8e-13  Score=82.65  Aligned_cols=99  Identities=19%  Similarity=0.179  Sum_probs=79.6

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCe-EEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGY-ILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +..-|.|.+||..+.++...+..|.+.+-+++|+++|.+||++++.|+ |+|+.+.+++......  +......+.+++|
T Consensus       149 s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR--RG~~~~~IySL~F  226 (391)
T KOG2110|consen  149 STTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR--RGTYPVSIYSLSF  226 (391)
T ss_pred             CCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee--CCceeeEEEEEEE
Confidence            445688999999999999999999999999999999999999999887 7899998887665311  1111234668899


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|+...|.++        +..++|+|+.+.
T Consensus       227 s~ds~~L~~s--------S~TeTVHiFKL~  248 (391)
T KOG2110|consen  227 SPDSQFLAAS--------SNTETVHIFKLE  248 (391)
T ss_pred             CCCCCeEEEe--------cCCCeEEEEEec
Confidence            9999877654        567889999763

>KOG0302|consensus

Probab=99.52  E-value=7e-14  Score=87.34  Aligned_cols=90  Identities=28%  Similarity=0.459  Sum_probs=68.3

Q ss_pred             cCeeeecCCCCce---eeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCc---ee---eeecceeeeecCc
Q psy8803           6 EEYKRLDYHTPIV---ETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPS---KV---KYSHDMKTFSWKY   75 (111)
Q Consensus         6 d~~i~iw~~~~~~---~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~---~~---~~~~~~~~~~~~~   75 (111)
                      -+.|++|...++.   -..-|.+|+..|-.++|||. ...|++|+.|++|+|||++...   ++   .|...++.+.|  
T Consensus       233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISW--  310 (440)
T KOG0302|consen  233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISW--  310 (440)
T ss_pred             ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEc--
Confidence            3467888887662   23345679999999999995 7899999999999999999762   22   25555555555  


Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                            +.... ++++|       +.+|+++|||||
T Consensus       311 ------nr~~~-lLasG-------~DdGt~~iwDLR  332 (440)
T KOG0302|consen  311 ------NRREP-LLASG-------GDDGTLSIWDLR  332 (440)
T ss_pred             ------cCCcc-eeeec-------CCCceEEEEEhh
Confidence                  54444 78998       899999999997

>KOG0268|consensus

Probab=99.51  E-value=1.1e-13  Score=86.16  Aligned_cols=102  Identities=16%  Similarity=0.242  Sum_probs=82.6

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCc--------------------
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS--------------------   60 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~--------------------   60 (111)
                      |+++.||.|+|||+.+.+++..|+.|.+.|..+++..  .-++++++|++++.|-+....                    
T Consensus        83 aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~  160 (433)
T KOG0268|consen   83 ASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNS  160 (433)
T ss_pred             hccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccc
Confidence            5789999999999999999999999999999999976  778899999999999854310                    


Q ss_pred             ------------eeeeecceeeeecCc--eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          61 ------------KVKYSHDMKTFSWKY--TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        61 ------------~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                                  -.....++....|..  +.++.|+|....+++++       ..|+.|.++|+|
T Consensus       161 ~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~-------~sDrsIvLyD~R  218 (433)
T KOG0268|consen  161 VFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC-------ASDRSIVLYDLR  218 (433)
T ss_pred             cccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeee-------ccCCceEEEecc
Confidence                        000222445556654  47889999999998988       789999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.50  E-value=9e-13  Score=79.73  Aligned_cols=97  Identities=24%  Similarity=0.241  Sum_probs=76.9

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      +..|+.+.+||+.+++....+..|...+.++.|+|++.++++++.++.+++||++.......   .. ..-.++..++|+
T Consensus       111 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~---~~-~~~~~i~~~~~~  186 (289)
T cd00200         111 SSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT---LT-GHTGEVNSVAFS  186 (289)
T ss_pred             ecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee---Ee-cCccccceEEEC
Confidence            44599999999998888888888999999999999999999988899999999986554331   11 111356678889


Q ss_pred             cCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          83 ESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |++..+++++        .++.|++||++
T Consensus       187 ~~~~~l~~~~--------~~~~i~i~d~~  207 (289)
T cd00200         187 PDGEKLLSSS--------SDGTIKLWDLS  207 (289)
T ss_pred             CCcCEEEEec--------CCCcEEEEECC
Confidence            9887776654        48899999974

>KOG0274|consensus

Probab=99.50  E-value=2.8e-13  Score=89.93  Aligned_cols=90  Identities=21%  Similarity=0.179  Sum_probs=73.1

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCceee
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYTQY   78 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~   78 (111)
                      ++.|.+|++|++.++..+..+.+|...|.++...  +.++++|+.|++|++|++...+++.    |...+        .+
T Consensus       307 gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V--------~s  376 (537)
T KOG0274|consen  307 GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRV--------YS  376 (537)
T ss_pred             ccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceE--------EE
Confidence            5789999999999999999999999999999886  8899999999999999999877665    33333        34


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.+.+.  ..+.+|       +.|+.|++||++
T Consensus       377 l~~~~~--~~~~Sg-------s~D~~IkvWdl~  400 (537)
T KOG0274|consen  377 LIVDSE--NRLLSG-------SLDTTIKVWDLR  400 (537)
T ss_pred             EEecCc--ceEEee-------eeccceEeecCC
Confidence            444443  445667       899999999985

>KOG1407|consensus

Probab=99.50  E-value=3.9e-13  Score=80.72  Aligned_cols=105  Identities=18%  Similarity=0.209  Sum_probs=86.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      |+++-|..+.+||+....+++.+..+.-+|..++|+.||++|+++++|..|-|=+++++....   ++.+-  ++..+|+
T Consensus       205 A~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~---eI~~~--~~t~tVA  279 (313)
T KOG1407|consen  205 ATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW---EIPCE--GPTFTVA  279 (313)
T ss_pred             eeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE---Eeecc--CCceeEE
Confidence            678899999999999999999999999999999999999999999999999999998887665   24332  5677899


Q ss_pred             EccCCCEEEEeccccCC-ccccCceEEEeec
Q psy8803          81 FNESDTLLLVSGVHFGT-PQSTSGEIAVFSL  110 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~~~~i~iw~~  110 (111)
                      |+|....|+.++++-.+ .+-..+.++++-+
T Consensus       280 WHPk~~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  280 WHPKRPLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             ecCCCceeeEEecCCCCccccccceeEEecC
Confidence            99999888887766333 2334577888754

>KOG4283|consensus

Probab=99.49  E-value=3.8e-13  Score=82.14  Aligned_cols=94  Identities=14%  Similarity=0.151  Sum_probs=77.5

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCC---CcEEEEEeCCCeEEEEecCCCceee----eecceeeeecC
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN---GRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWK   74 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~   74 (111)
                      +|++|.++++||.++.+....|+ ..+.|+.-+++|-   ..++++|..+-.+++-|+..+...+    |...+.     
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl-----  192 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL-----  192 (397)
T ss_pred             cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE-----
Confidence            68999999999999998888887 6788999899994   3477888888899999999875443    544454     


Q ss_pred             ceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                         .|.|+|....++++|       +.|+.|++||+|
T Consensus       193 ---aV~Wsp~~e~vLatg-------saDg~irlWDiR  219 (397)
T KOG4283|consen  193 ---AVEWSPSSEWVLATG-------SADGAIRLWDIR  219 (397)
T ss_pred             ---EEEeccCceeEEEec-------CCCceEEEEEee
Confidence               455678888999999       999999999986

>KOG0293|consensus

Probab=99.49  E-value=5.3e-14  Score=88.88  Aligned_cols=97  Identities=18%  Similarity=0.259  Sum_probs=75.6

Q ss_pred             ccccCeeeecCCCCceeeeeeeccc--ccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHT--HQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~--~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      +.-+..+++||+...+.+..+.||.  ..+..-+|.- +...+++|++|++|+||+-+.+.....   ...+. ..+++|
T Consensus       413 nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~---LsGHs-~~vNcV  488 (519)
T KOG0293|consen  413 NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV---LSGHS-KTVNCV  488 (519)
T ss_pred             EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe---ecCCc-ceeeEE
Confidence            4457889999999888888888885  3455556744 568999999999999999998876651   11111 455677


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +++|.+..+++++       +.||+|+||..
T Consensus       489 swNP~~p~m~ASa-------sDDgtIRIWg~  512 (519)
T KOG0293|consen  489 SWNPADPEMFASA-------SDDGTIRIWGP  512 (519)
T ss_pred             ecCCCCHHHhhcc-------CCCCeEEEecC
Confidence            7899999999999       99999999964

>KOG0289|consensus

Probab=99.49  E-value=4.8e-13  Score=84.92  Aligned_cols=88  Identities=23%  Similarity=0.274  Sum_probs=71.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      ++..|+.++|||+.+.....+|.+|++.|..++|+.+|-+|+++.+|+.+++||++..+.++.   +.--...+++.+.|
T Consensus       364 tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt---~~l~~~~~v~s~~f  440 (506)
T KOG0289|consen  364 TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT---IQLDEKKEVNSLSF  440 (506)
T ss_pred             ccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccce---eeccccccceeEEE
Confidence            577899999999999989999999999999999999999999999999999999997654431   11111134667888


Q ss_pred             ccCCCEEEEec
Q psy8803          82 NESDTLLLVSG   92 (111)
Q Consensus        82 ~~~~~~~~~~~   92 (111)
                      .+.+.++...|
T Consensus       441 D~SGt~L~~~g  451 (506)
T KOG0289|consen  441 DQSGTYLGIAG  451 (506)
T ss_pred             cCCCCeEEeec
Confidence            98888876643

>KOG0289|consensus

Probab=99.49  E-value=6.1e-13  Score=84.45  Aligned_cols=98  Identities=14%  Similarity=0.235  Sum_probs=73.8

Q ss_pred             cccccCeeeecCCCCceeeeeeec--ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQ--HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~--~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      .+++|++..+.|+.++..+..-..  .+=.+.+.+|+|||.+|++|..|+.+++||++......   ..... -.++..+
T Consensus       320 sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a---~Fpgh-t~~vk~i  395 (506)
T KOG0289|consen  320 SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA---KFPGH-TGPVKAI  395 (506)
T ss_pred             EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc---cCCCC-CCceeEE
Confidence            467899999999999977655442  22348899999999999999999999999998754332   11111 1456677


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|+.++.++++ +       +.|+.|++||||
T Consensus       396 ~FsENGY~Lat-~-------add~~V~lwDLR  419 (506)
T KOG0289|consen  396 SFSENGYWLAT-A-------ADDGSVKLWDLR  419 (506)
T ss_pred             EeccCceEEEE-E-------ecCCeEEEEEeh
Confidence            88888877655 4       578889999997

>KOG1036|consensus

Probab=99.48  E-value=2.5e-13  Score=82.81  Aligned_cols=92  Identities=14%  Similarity=0.109  Sum_probs=72.1

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee---eecceeeeecCceee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK---YSHDMKTFSWKYTQY   78 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~   78 (111)
                      +++|||++++||+....+...+. |..++.+++|.+ ...+++|+.|+.++.+|+.+.....   |.        .++++
T Consensus        30 vssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth~--------~~i~c   99 (323)
T KOG1036|consen   30 VSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTHD--------EGIRC   99 (323)
T ss_pred             EEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcceeeccCC--------CceEE
Confidence            57899999999999776666665 899999999986 5567889999999999999865543   43        34455


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.+.+....+ ++|       ++|+.|++||.|
T Consensus       100 i~~~~~~~~v-Isg-------sWD~~ik~wD~R  124 (323)
T KOG1036|consen  100 IEYSYEVGCV-ISG-------SWDKTIKFWDPR  124 (323)
T ss_pred             EEeeccCCeE-EEc-------ccCccEEEEecc
Confidence            6666655554 566       899999999976

>KOG1539|consensus

Probab=99.48  E-value=2.7e-13  Score=91.44  Aligned_cols=96  Identities=15%  Similarity=0.155  Sum_probs=80.1

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      ....|-.|+++|..+.+.++.|.||...|.+++|||||++|++++.|++|++||+.+....-    ...+. .+...+.|
T Consensus       551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID----~~~vd-~~~~sls~  625 (910)
T KOG1539|consen  551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID----GLLVD-SPCTSLSF  625 (910)
T ss_pred             hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee----eEecC-CcceeeEE
Confidence            45567889999999999999999999999999999999999999999999999999887664    22222 56678899


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEee
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      +|.+.+++++-       ....-|.+|-
T Consensus       626 SPngD~LAT~H-------vd~~gIylWs  646 (910)
T KOG1539|consen  626 SPNGDFLATVH-------VDQNGIYLWS  646 (910)
T ss_pred             CCCCCEEEEEE-------ecCceEEEEE
Confidence            99999998876       3445588884

>KOG1445|consensus

Probab=99.48  E-value=8.9e-14  Score=92.12  Aligned_cols=102  Identities=18%  Similarity=0.229  Sum_probs=76.4

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecc-eeeeecCceeeE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHD-MKTFSWKYTQYS   79 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~v   79 (111)
                      |++++|-+|++||+...+....|.+|++.|..++|||||+.+++.+.|+++++|+.+..+...+... ...   ...--+
T Consensus       694 a~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg---tRgARi  770 (1012)
T KOG1445|consen  694 AVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVG---TRGARI  770 (1012)
T ss_pred             hhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCcc---CcceeE
Confidence            5789999999999999999999999999999999999999999999999999999987543321111 100   111134


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      .|.-++..++++|.+-.    .++.|.+||
T Consensus       771 ~wacdgr~viv~Gfdk~----SeRQv~~Y~  796 (1012)
T KOG1445|consen  771 LWACDGRIVIVVGFDKS----SERQVQMYD  796 (1012)
T ss_pred             EEEecCcEEEEeccccc----chhhhhhhh
Confidence            45568888888874432    255566665

>KOG0274|consensus

Probab=99.48  E-value=7.1e-13  Score=88.05  Aligned_cols=92  Identities=21%  Similarity=0.213  Sum_probs=74.3

Q ss_pred             cccccCeeeecCCCCceeeee-eecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCce
Q psy8803           2 KSWYEEYKRLDYHTPIVETEV-LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYT   76 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~   76 (111)
                      +++.|.++++||..++..+.. +.||.+.|.++++..-+..+++|+.|.++++||..++.+..    |...+.++.    
T Consensus       223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~----  298 (537)
T KOG0274|consen  223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLT----  298 (537)
T ss_pred             ecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEE----
Confidence            578899999999999988887 99999999999998888999999999999999999887765    444454443    


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                             .....+++|       +.|.+|++|+++
T Consensus       299 -------~~~~~~~sg-------s~D~tVkVW~v~  319 (537)
T KOG0274|consen  299 -------IDPFLLVSG-------SRDNTVKVWDVT  319 (537)
T ss_pred             -------ccCceEeec-------cCCceEEEEecc
Confidence                   233444555       778888888764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.48  E-value=1.2e-12  Score=79.15  Aligned_cols=98  Identities=24%  Similarity=0.313  Sum_probs=76.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +++.|+.+++|++..++.+..+..|...+.++.|+++++++++++.++.+.+||++.......   .... -.++..++|
T Consensus        68 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~-~~~i~~~~~  143 (289)
T cd00200          68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT---LRGH-TDWVNSVAF  143 (289)
T ss_pred             EEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEE---eccC-CCcEEEEEE
Confidence            456799999999998888888888999999999999989999998899999999986554431   1111 135667888


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|++..+ +++       +.++.|++||++
T Consensus       144 ~~~~~~l-~~~-------~~~~~i~i~d~~  165 (289)
T cd00200         144 SPDGTFV-ASS-------SQDGTIKLWDLR  165 (289)
T ss_pred             cCcCCEE-EEE-------cCCCcEEEEEcc
Confidence            8886554 444       458899999974

>KOG0290|consensus

Probab=99.47  E-value=8.4e-13  Score=80.42  Aligned_cols=103  Identities=15%  Similarity=0.187  Sum_probs=76.1

Q ss_pred             cccccCeeeecCCCCcee---eeeeecccccEEEEEEcCCC-cEEEEEeCCCeEEEEecCCCc---eeee----ecceee
Q psy8803           2 KSWYEEYKRLDYHTPIVE---TEVLTQHTHQVLHVSFSHNG-RYFATCSKDGYILVWTSSYPS---KVKY----SHDMKT   70 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~---~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~i~iw~~~~~~---~~~~----~~~~~~   70 (111)
                      +|+-|.++.|||+..+..   ...|-+|.++|..++|...+ +.|++.|.||.+++||++...   .+..    ..+...
T Consensus       168 tSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlR  247 (364)
T KOG0290|consen  168 TSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLR  247 (364)
T ss_pred             eecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCccee
Confidence            688999999999998733   45667899999999999864 689999999999999998631   0000    001111


Q ss_pred             eec-------------------------------------CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          71 FSW-------------------------------------KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        71 ~~~-------------------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.|                                     ..++.++|.|....-++++       +.|..+.|||++
T Consensus       248 LswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta-------GDD~qaliWDl~  318 (364)
T KOG0290|consen  248 LSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA-------GDDCQALIWDLQ  318 (364)
T ss_pred             eccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec-------CCcceEEEEecc
Confidence            111                                     2357899999776666777       789999999984

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.47  E-value=8e-13  Score=91.60  Aligned_cols=97  Identities=21%  Similarity=0.218  Sum_probs=71.4

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEc-CCCcEEEEEeCCCeEEEEecCCCce-eeeecceeeeecCceee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFS-HNGRYFATCSKDGYILVWTSSYPSK-VKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~   78 (111)
                      ++++.|++|++||++++..+..+..+ ..+.++.|. +++..|++|+.|+.|++||++.... ...   .... -..+..
T Consensus       592 ~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~---~~~h-~~~V~~  666 (793)
T PLN00181        592 ASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT---MIGH-SKTVSY  666 (793)
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE---ecCC-CCCEEE
Confidence            46788999999999998888887754 688999995 4699999999999999999986532 110   1111 134456


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++|. ++..+ +++       +.|+.|++||++
T Consensus       667 v~f~-~~~~l-vs~-------s~D~~ikiWd~~  690 (793)
T PLN00181        667 VRFV-DSSTL-VSS-------STDNTLKLWDLS  690 (793)
T ss_pred             EEEe-CCCEE-EEE-------ECCCEEEEEeCC
Confidence            6675 45554 555       789999999974

>KOG0293|consensus

Probab=99.47  E-value=3.1e-13  Score=85.47  Aligned_cols=98  Identities=15%  Similarity=0.212  Sum_probs=80.4

Q ss_pred             CcccccCeeeecCCCCc---eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-eecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTPI---VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~   76 (111)
                      |+++.|.+.-||++...   +...++.+|...|..+.||||.+++++|+.+..+.+||..++.... +...   +. ..+
T Consensus       240 AsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~---~~-~S~  315 (519)
T KOG0293|consen  240 ASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG---LG-FSV  315 (519)
T ss_pred             eeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC---cC-CCc
Confidence            68899999999998754   4588889999999999999999999999999999999999876554 1111   12 345


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++++|.|++..+ ++|       +.|+.|..||+
T Consensus       316 ~sc~W~pDg~~~-V~G-------s~dr~i~~wdl  341 (519)
T KOG0293|consen  316 SSCAWCPDGFRF-VTG-------SPDRTIIMWDL  341 (519)
T ss_pred             ceeEEccCCcee-Eec-------CCCCcEEEecC
Confidence            678899999886 566       78899999986

>KOG0303|consensus

Probab=99.46  E-value=4.8e-13  Score=84.17  Aligned_cols=98  Identities=11%  Similarity=0.065  Sum_probs=79.6

Q ss_pred             CcccccCeeeecCCCCc-------eeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeecceeeee
Q psy8803           1 KKSWYEEYKRLDYHTPI-------VETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFS   72 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~   72 (111)
                      |+++-|-+|+||.+..+       +++..|.+|+..|.-+.|+|. .+.|++++.|.++.+|++.+++.+....     .
T Consensus        98 ASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-----h  172 (472)
T KOG0303|consen   98 ASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-----H  172 (472)
T ss_pred             ecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-----C
Confidence            67889999999999643       678889999999999999997 6789999999999999999987654321     1


Q ss_pred             cCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          73 WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      -.-+.++.|+-++..+++ .       +.|.+|+|||.|
T Consensus       173 pd~i~S~sfn~dGs~l~T-t-------ckDKkvRv~dpr  203 (472)
T KOG0303|consen  173 PDMVYSMSFNRDGSLLCT-T-------CKDKKVRVIDPR  203 (472)
T ss_pred             CCeEEEEEeccCCceeee-e-------cccceeEEEcCC
Confidence            123556788888888755 4       689999999975

>KOG0267|consensus

Probab=99.45  E-value=1.3e-13  Score=91.91  Aligned_cols=98  Identities=15%  Similarity=0.234  Sum_probs=79.9

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-eecceeeeecCceeeE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFSWKYTQYS   79 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~v   79 (111)
                      |.+..||+|++||+...+.+++|.+|...+..+.|+|-+.++++++.|+-+++||.+..-+.+ +.+..     ..+..+
T Consensus        86 aagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~-----~vv~~l  160 (825)
T KOG0267|consen   86 AAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT-----RVVDVL  160 (825)
T ss_pred             cccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc-----ceeEEE
Confidence            467889999999999999999999999999999999999999999999999999998543333 22211     234567


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|+|++.++ +.|       +.|.+++|||++
T Consensus       161 ~lsP~Gr~v-~~g-------~ed~tvki~d~~  184 (825)
T KOG0267|consen  161 RLSPDGRWV-ASG-------GEDNTVKIWDLT  184 (825)
T ss_pred             eecCCCcee-ecc-------CCcceeeeeccc
Confidence            899999886 455       568999999973

>KOG0643|consensus

Probab=99.45  E-value=3.1e-12  Score=77.15  Aligned_cols=101  Identities=14%  Similarity=0.097  Sum_probs=84.4

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      -..|.+..+|....|+.+.++.||++.|+|+..+-+...+++|+.|.++++||++++++..... ..    .++..+.|+
T Consensus        28 caKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~----~~Vk~~~F~  102 (327)
T KOG0643|consen   28 CAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TN----SPVKRVDFS  102 (327)
T ss_pred             ecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cC----CeeEEEeec
Confidence            3578899999998899999999999999999999999999999999999999999998776311 11    456678899


Q ss_pred             cCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          83 ESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.+..++++.+...+.   .+.|.++|+|
T Consensus       103 ~~gn~~l~~tD~~mg~---~~~v~~fdi~  128 (327)
T KOG0643|consen  103 FGGNLILASTDKQMGY---TCFVSVFDIR  128 (327)
T ss_pred             cCCcEEEEEehhhcCc---ceEEEEEEcc
Confidence            9999998887666553   5678888875

>KOG0321|consensus

Probab=99.45  E-value=2.7e-13  Score=89.28  Aligned_cols=103  Identities=17%  Similarity=0.124  Sum_probs=75.0

Q ss_pred             cccccCeeeecCCCCceeeee--eecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCc--e---------eeeec-
Q psy8803           2 KSWYEEYKRLDYHTPIVETEV--LTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPS--K---------VKYSH-   66 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~--~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~--~---------~~~~~-   66 (111)
                      +.+.|.+++.||+....+...  +.||++.|..++|.++ ...|++|+.|+.+.|||++...  .         ..|.. 
T Consensus       117 sasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~  196 (720)
T KOG0321|consen  117 SASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA  196 (720)
T ss_pred             EccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC
Confidence            456799999999998887766  7899999999999995 6789999999999999997421  0         00111 


Q ss_pred             --------------ceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          67 --------------DMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        67 --------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                                    ......+....++.+..++..|+.+|       ..|+.|+|||||
T Consensus       197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSag-------a~D~~iKVWDLR  248 (720)
T KOG0321|consen  197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAG-------AADSTIKVWDLR  248 (720)
T ss_pred             CCCCchhhccccccccccCceeeeeEEEEEeccceeeecc-------CCCcceEEEeec
Confidence                          00001111112366677888887777       679999999986

>KOG1273|consensus

Probab=99.44  E-value=7.9e-13  Score=81.34  Aligned_cols=61  Identities=18%  Similarity=0.207  Sum_probs=56.0

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK   61 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~   61 (111)
                      |++..||.+-|||+.+-..-..+.+|..+|.+++||+||+.|++++.|-.|.+||+..+.+
T Consensus        39 AvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~   99 (405)
T KOG1273|consen   39 AVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP   99 (405)
T ss_pred             eeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc
Confidence            5788999999999998887788899999999999999999999999999999999987643

>KOG0303|consensus

Probab=99.44  E-value=1.4e-12  Score=82.11  Aligned_cols=101  Identities=17%  Similarity=0.155  Sum_probs=77.0

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.|.+|.||+..+++.+.++. |...|+.++|+.||.+|++.+.|++|+|||.+.+..+...   .++.....+-+.
T Consensus       148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~---~~heG~k~~Rai  223 (472)
T KOG0303|consen  148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG---VAHEGAKPARAI  223 (472)
T ss_pred             hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec---ccccCCCcceeE
Confidence            467899999999999999998888 9999999999999999999999999999999988766521   111112222334


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      |-.++. ++++|  +..  -.++.+.+||.
T Consensus       224 fl~~g~-i~tTG--fsr--~seRq~aLwdp  248 (472)
T KOG0303|consen  224 FLASGK-IFTTG--FSR--MSERQIALWDP  248 (472)
T ss_pred             EeccCc-eeeec--ccc--ccccceeccCc
Confidence            444555 66766  333  34788999974

>KOG2111|consensus

Probab=99.44  E-value=3.7e-12  Score=78.18  Aligned_cols=97  Identities=18%  Similarity=0.239  Sum_probs=77.9

Q ss_pred             ccCeeeecCCCCcee--eeeeecccccEEEEEEcCCCcEEEEEeCCCe-EEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           5 YEEYKRLDYHTPIVE--TEVLTQHTHQVLHVSFSHNGRYFATCSKDGY-ILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~--~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      .-|.|+|-|+...+.  ...+.+|.+.|.|++...+|.++|++|..|+ |+|||..++......  -+...-..+.+++|
T Consensus       157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~--RRG~d~A~iy~iaF  234 (346)
T KOG2111|consen  157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL--RRGVDRADIYCIAF  234 (346)
T ss_pred             ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee--ecCCchheEEEEEe
Confidence            458899999886654  4667899999999999999999999999987 889999998776631  12222245778999


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|+...++++        +..|+++|+.++
T Consensus       235 Sp~~s~Lavs--------SdKgTlHiF~l~  256 (346)
T KOG2111|consen  235 SPNSSWLAVS--------SDKGTLHIFSLR  256 (346)
T ss_pred             CCCccEEEEE--------cCCCeEEEEEee
Confidence            9999888764        789999999875

>KOG0305|consensus

Probab=99.43  E-value=5e-13  Score=87.00  Aligned_cols=97  Identities=15%  Similarity=0.183  Sum_probs=75.9

Q ss_pred             cccccCeeeecCCCCceeeee-eecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCce
Q psy8803           2 KSWYEEYKRLDYHTPIVETEV-LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYT   76 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~   76 (111)
                      +++-|+.|..+|++..+.... +.+|...|..+.|++|++++++|+.|..+.|||........    |...+        
T Consensus       275 sGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAV--------  346 (484)
T KOG0305|consen  275 SGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAV--------  346 (484)
T ss_pred             EecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceee--------
Confidence            467799999999998765555 88999999999999999999999999999999996544333    43334        


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..++|+|-...++++|   +  ++.|+.|++||..
T Consensus       347 KA~awcP~q~~lLAsG---G--Gs~D~~i~fwn~~  376 (484)
T KOG0305|consen  347 KALAWCPWQSGLLATG---G--GSADRCIKFWNTN  376 (484)
T ss_pred             eEeeeCCCccCceEEc---C--CCcccEEEEEEcC
Confidence            4566678666666665   1  3679999999963

>KOG0772|consensus

Probab=99.43  E-value=5.6e-13  Score=86.27  Aligned_cols=105  Identities=17%  Similarity=0.182  Sum_probs=74.0

Q ss_pred             CcccccCeeeecCCCCc--eeeee-eecccc--cEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee-eeecceeeeecC
Q psy8803           1 KKSWYEEYKRLDYHTPI--VETEV-LTQHTH--QVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV-KYSHDMKTFSWK   74 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~--~~~~~-~~~~~~--~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~   74 (111)
                      |++.-||.|++|+....  .+... -.+|..  .|.++.||+||+.|++-+.|.++++||++..... .....+..  ..
T Consensus       333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t--~~  410 (641)
T KOG0772|consen  333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT--PF  410 (641)
T ss_pred             hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc--cC
Confidence            56788999999998532  22222 257877  9999999999999999999999999999875433 21111111  13


Q ss_pred             ceeeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      +.+.++|+|++..+ ++|...... ...+.+.++|
T Consensus       411 ~~tdc~FSPd~kli-~TGtS~~~~-~~~g~L~f~d  443 (641)
T KOG0772|consen  411 PGTDCCFSPDDKLI-LTGTSAPNG-MTAGTLFFFD  443 (641)
T ss_pred             CCCccccCCCceEE-EecccccCC-CCCceEEEEe
Confidence            45678999998765 555554442 5566788876

>KOG0318|consensus

Probab=99.43  E-value=2.6e-12  Score=83.24  Aligned_cols=95  Identities=13%  Similarity=0.222  Sum_probs=74.9

Q ss_pred             CcccccCeeeecCCCCce--eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-----eecceeeeec
Q psy8803           1 KKSWYEEYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-----YSHDMKTFSW   73 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-----~~~~~~~~~~   73 (111)
                      |++..|+.++||.+..+.  ....+..|.+.+.++++|||+.+|+++...+++.+||..+.+...     |..++++   
T Consensus       459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~---  535 (603)
T KOG0318|consen  459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINC---  535 (603)
T ss_pred             EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEE---
Confidence            467889999999998643  333556799999999999999999999999999999998765421     4445554   


Q ss_pred             CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          74 KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                           ++|+|+. .++++|       +-|..|.||++.
T Consensus       536 -----~aWsP~n-~~vATG-------SlDt~Viiysv~  560 (603)
T KOG0318|consen  536 -----VAWSPNN-KLVATG-------SLDTNVIIYSVK  560 (603)
T ss_pred             -----EEeCCCc-eEEEec-------cccceEEEEEcc
Confidence                 4555555 566888       999999999874

>KOG0267|consensus

Probab=99.43  E-value=3.5e-13  Score=89.85  Aligned_cols=95  Identities=18%  Similarity=0.244  Sum_probs=78.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~   76 (111)
                      |.++.|.-.++||++..-+.+.+.+|...|..+.|+|+|++++.+++|..++|||...++...    |...+        
T Consensus       128 a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v--------  199 (825)
T KOG0267|consen  128 ASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKV--------  199 (825)
T ss_pred             ccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccc--------
Confidence            457788999999999888888999999999999999999999999999999999997766553    33333        


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.+.|+|.+ .++.+|       +.|+++++||++
T Consensus       200 ~sle~hp~e-~Lla~G-------s~d~tv~f~dle  226 (825)
T KOG0267|consen  200 QSLEFHPLE-VLLAPG-------SSDRTVRFWDLE  226 (825)
T ss_pred             cccccCchh-hhhccC-------CCCceeeeeccc
Confidence            344566655 556888       899999999985

>KOG0306|consensus

Probab=99.42  E-value=1.1e-12  Score=88.02  Aligned_cols=97  Identities=15%  Similarity=0.207  Sum_probs=78.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      |+|.=|.+|++|.+.+-+....|.||.-+|.||..|||+.+++||+.|+.+++|.+..+.+-+   ++.++. ..+.+|.
T Consensus       524 aVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK---S~fAHd-DSvm~V~  599 (888)
T KOG0306|consen  524 AVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK---SFFAHD-DSVMSVQ  599 (888)
T ss_pred             EEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh---hhhccc-CceeEEE
Confidence            456779999999999999999999999999999999999999999999999999998775543   122222 2345677


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEee
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      |-|.. +++.++       +.|+.|+.||
T Consensus       600 F~P~~-~~FFt~-------gKD~kvKqWD  620 (888)
T KOG0306|consen  600 FLPKT-HLFFTC-------GKDGKVKQWD  620 (888)
T ss_pred             Ecccc-eeEEEe-------cCcceEEeec
Confidence            88855 444555       7899999997

>KOG0296|consensus

Probab=99.42  E-value=5.2e-12  Score=78.73  Aligned_cols=97  Identities=23%  Similarity=0.322  Sum_probs=81.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-eecceeeeecCceeeE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFSWKYTQYS   79 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~v   79 (111)
                      ||++-|..-.+|++.++.....+.+|...|.++.|+.||.+|++|+.+|.++||...++...- ..+++..+.|     +
T Consensus        80 aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieW-----l  154 (399)
T KOG0296|consen   80 ATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEW-----L  154 (399)
T ss_pred             EecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEE-----E
Confidence            578889999999999999999999999999999999999999999999999999998865443 2235555555     7


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .|+|.. .++..|       +.|+.+=.|.+
T Consensus       155 ~WHp~a-~illAG-------~~DGsvWmw~i  177 (399)
T KOG0296|consen  155 KWHPRA-HILLAG-------STDGSVWMWQI  177 (399)
T ss_pred             Eecccc-cEEEee-------cCCCcEEEEEC
Confidence            889855 555666       88999999976

>KOG0270|consensus

Probab=99.42  E-value=4.1e-12  Score=80.72  Aligned_cols=100  Identities=12%  Similarity=0.116  Sum_probs=78.7

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      |+++-|.+|++||+.++++...+..|.+.|.++.|+|. ...|++|+.|+++.+.|.+......   .-+... +.+-.+
T Consensus       260 aSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---~~wk~~-g~VEkv  335 (463)
T KOG0270|consen  260 ASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---KEWKFD-GEVEKV  335 (463)
T ss_pred             EecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC---ceEEec-cceEEE
Confidence            57888999999999999999999999999999999995 7899999999999999999632221   111111 234456


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|+|.....+.++       ..||.++-+|+|
T Consensus       336 ~w~~~se~~f~~~-------tddG~v~~~D~R  360 (463)
T KOG0270|consen  336 AWDPHSENSFFVS-------TDDGTVYYFDIR  360 (463)
T ss_pred             EecCCCceeEEEe-------cCCceEEeeecC
Confidence            6677766666776       788889999886

>KOG0275|consensus

Probab=99.41  E-value=1.3e-13  Score=85.22  Aligned_cols=99  Identities=19%  Similarity=0.201  Sum_probs=76.5

Q ss_pred             CcccccCeeeecCCCCceeeeeee--------cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLT--------QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFS   72 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~--------~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~   72 (111)
                      ++++.||.|-+|++.+|+....++        -++..|.|++|+.|..++++|+.||+|++|.++++.+......  .. 
T Consensus       229 vsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr--AH-  305 (508)
T KOG0275|consen  229 VSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDR--AH-  305 (508)
T ss_pred             eeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhh--hh-
Confidence            478899999999999987655443        3678999999999999999999999999999999877651111  11 


Q ss_pred             cCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          73 WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      -..++++.|+.+...++. +       +.|.+++|--+
T Consensus       306 tkGvt~l~FSrD~SqiLS-~-------sfD~tvRiHGl  335 (508)
T KOG0275|consen  306 TKGVTCLSFSRDNSQILS-A-------SFDQTVRIHGL  335 (508)
T ss_pred             ccCeeEEEEccCcchhhc-c-------cccceEEEecc
Confidence            134567788888888765 3       67888887654

>KOG4283|consensus

Probab=99.41  E-value=1.4e-12  Score=79.74  Aligned_cols=103  Identities=20%  Similarity=0.218  Sum_probs=78.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCc-EEEEEeCCCeEEEEecCCC-cee----eeec------ce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR-YFATCSKDGYILVWTSSYP-SKV----KYSH------DM   68 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~i~iw~~~~~-~~~----~~~~------~~   68 (111)
                      |++.-|-.|++-|+.+|...+.|.||.+.|.++.|+|... .|++|+.|+.|++||++.. -++    .|..      +.
T Consensus       162 A~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~  241 (397)
T KOG4283|consen  162 AAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKT  241 (397)
T ss_pred             EEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccc
Confidence            3456677899999999999999999999999999999755 6888999999999999752 111    1210      11


Q ss_pred             eeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          69 KTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +....+.++.++|..++.+++.+|        .|..+++|++.
T Consensus       242 n~ah~gkvngla~tSd~~~l~~~g--------td~r~r~wn~~  276 (397)
T KOG4283|consen  242 NTAHYGKVNGLAWTSDARYLASCG--------TDDRIRVWNME  276 (397)
T ss_pred             cccccceeeeeeecccchhhhhcc--------CccceEEeecc
Confidence            112224577889999998887654        67889999863

>KOG2445|consensus

Probab=99.40  E-value=1.4e-11  Score=75.60  Aligned_cols=103  Identities=17%  Similarity=0.244  Sum_probs=73.7

Q ss_pred             CcccccCeeeecCCCCc----eeeeeeecccccEEEEEEcC-C-CcEEEEEeCCCeEEEEecCCCceeeee-cceee--e
Q psy8803           1 KKSWYEEYKRLDYHTPI----VETEVLTQHTHQVLHVSFSH-N-GRYFATCSKDGYILVWTSSYPSKVKYS-HDMKT--F   71 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~i~~s~-~-~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~--~   71 (111)
                      |+.+.|++++|||.++.    .+...++.|.+.|..+.|.+ . |+.+++++.|+++.||.-.......+. ..++.  +
T Consensus        29 AtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl  108 (361)
T KOG2445|consen   29 ATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTL  108 (361)
T ss_pred             eeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEe
Confidence            57889999999997644    56777889999999999954 5 999999999999999976321111110 11111  1


Q ss_pred             e--cCceeeEEEccCC-CEEEEeccccCCccccCceEEEeec
Q psy8803          72 S--WKYTQYSQFNESD-TLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        72 ~--~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .  -+.++.|.|.|.. ..+++++       +.||.+|||+.
T Consensus       109 ~DsrssV~DV~FaP~hlGLklA~~-------~aDG~lRIYEA  143 (361)
T KOG2445|consen  109 VDSRSSVTDVKFAPKHLGLKLAAA-------SADGILRIYEA  143 (361)
T ss_pred             ecCCcceeEEEecchhcceEEEEe-------ccCcEEEEEec
Confidence            1  1356788999944 4555666       88999999974

>KOG1274|consensus

Probab=99.39  E-value=6.2e-12  Score=85.66  Aligned_cols=103  Identities=20%  Similarity=0.310  Sum_probs=80.2

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-----------e-ecce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-----------Y-SHDM   68 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-----------~-~~~~   68 (111)
                      |.++.|-.|++-+.........+++|.+.|.++.|+|.+.+||+.+.||.+++|++.++.+..           . ...+
T Consensus       112 aagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~  191 (933)
T KOG1274|consen  112 AAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRIC  191 (933)
T ss_pred             EeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccccccee
Confidence            457889999999999998899999999999999999999999999999999999998642111           0 1111


Q ss_pred             eeeecCc------------------------------------eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          69 KTFSWKY------------------------------------TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        69 ~~~~~~~------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ...+|+|                                    ...++|+|.+.+|+++        ..++.|.|||++
T Consensus       192 ~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs--------~~~g~I~vWnv~  262 (933)
T KOG1274|consen  192 TRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAS--------TLDGQILVWNVD  262 (933)
T ss_pred             eeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeee--------ccCCcEEEEecc
Confidence            2233332                                    2467999999887653        689999999974

>KOG0973|consensus

Probab=99.39  E-value=4.5e-12  Score=87.19  Aligned_cols=98  Identities=12%  Similarity=0.181  Sum_probs=78.0

Q ss_pred             CcccccCeeeecCCCC-------c-----------eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee
Q psy8803           1 KKSWYEEYKRLDYHTP-------I-----------VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV   62 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~-------~-----------~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~   62 (111)
                      |+++.|+.|.||....       +           +.+..+.+|...|..++|+|++.+|++++.|.+|.+|+.++....
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~  164 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL  164 (942)
T ss_pred             eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee
Confidence            6788999999999873       0           367788899999999999999999999999999999999886544


Q ss_pred             eeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          63 KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        63 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .   .+..+. +.+-.+.|.|-+.++++ -       +.|++|+||++
T Consensus       165 ~---vl~~H~-s~VKGvs~DP~Gky~AS-q-------sdDrtikvwrt  200 (942)
T KOG0973|consen  165 K---VLRGHQ-SLVKGVSWDPIGKYFAS-Q-------SDDRTLKVWRT  200 (942)
T ss_pred             e---eeeccc-ccccceEECCccCeeee-e-------cCCceEEEEEc
Confidence            3   122221 44556777888888754 4       78999999984

>KOG2394|consensus

Probab=99.39  E-value=1.3e-12  Score=84.83  Aligned_cols=75  Identities=16%  Similarity=0.182  Sum_probs=63.7

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCce
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYT   76 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~   76 (111)
                      +=+-||++||+|+.+.+++-.++..-+...|++|||||++|++|++|..+.||.+...+.+.    |..+|..+++.|.
T Consensus       307 ~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpy  385 (636)
T KOG2394|consen  307 TVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPY  385 (636)
T ss_pred             EEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccc
Confidence            34679999999999888777777788899999999999999999999999999998766553    7778877776643

>KOG0306|consensus

Probab=99.38  E-value=2.6e-12  Score=86.18  Aligned_cols=94  Identities=18%  Similarity=0.163  Sum_probs=74.3

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCc----eeeeecceeeeecCcee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS----KVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~----~~~~~~~~~~~~~~~~~   77 (111)
                      ++=-||.|+||+..++....++.+|...|.++.|+..|..|++||.|+.|.+||+-...    ...|...+....+    
T Consensus        82 VGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F----  157 (888)
T KOG0306|consen   82 VGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALF----  157 (888)
T ss_pred             EEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhc----
Confidence            44569999999999999999999999999999999999999999999999999996532    2225444443332    


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                          . .+..++++.       +.|+.|++||++
T Consensus       158 ----~-~~~~~lvS~-------sKDs~iK~WdL~  179 (888)
T KOG0306|consen  158 ----L-NGDSFLVSV-------SKDSMIKFWDLE  179 (888)
T ss_pred             ----c-CCCeEEEEe-------ccCceEEEEecc
Confidence                2 344555666       899999999984

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.37  E-value=2.9e-11  Score=71.31  Aligned_cols=97  Identities=12%  Similarity=0.115  Sum_probs=71.1

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeC---CCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSK---DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ..+..+.+||++ ++.+..+.  ...+..+.|+|+|++++.++.   .|.+.+||.+..+.+....      ......++
T Consensus        80 ~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~------~~~~t~~~  150 (194)
T PF08662_consen   80 SMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE------HSDATDVE  150 (194)
T ss_pred             cCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc------cCcEEEEE
Confidence            456789999997 66666664  457788999999999999864   4679999999766554211      12245678


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++.+++++....+.  ..|+.++||++.
T Consensus       151 WsPdGr~~~ta~t~~r~--~~dng~~Iw~~~  179 (194)
T PF08662_consen  151 WSPDGRYLATATTSPRL--RVDNGFKIWSFQ  179 (194)
T ss_pred             EcCCCCEEEEEEeccce--eccccEEEEEec
Confidence            99999999877643333  468889999863

>KOG0308|consensus

Probab=99.37  E-value=8e-12  Score=82.71  Aligned_cols=94  Identities=21%  Similarity=0.184  Sum_probs=74.2

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCcee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYTQ   77 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~~   77 (111)
                      .++-.+-+++||.++++.+..+.||+..|.++..+.||+.+++++.|++|++||+...+++.    |...++.+.     
T Consensus       188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~-----  262 (735)
T KOG0308|consen  188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ-----  262 (735)
T ss_pred             ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe-----
Confidence            35567789999999999999999999999999999999999999999999999998766554    555555444     


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                         -+|+-.+ +.+|       +.|+.|..=||+
T Consensus       263 ---~~~sf~~-vYsG-------~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  263 ---SSPSFTH-VYSG-------GRDGNIYRTDLR  285 (735)
T ss_pred             ---eCCCcce-EEec-------CCCCcEEecccC
Confidence               2344444 4666       677777665553

>KOG0641|consensus

Probab=99.37  E-value=1.4e-11  Score=73.19  Aligned_cols=95  Identities=19%  Similarity=0.165  Sum_probs=75.0

Q ss_pred             CcccccCeeeecCCCCceeeeeee--cc-----cccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eeccee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLT--QH-----THQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMK   69 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~--~~-----~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~   69 (111)
                      |+++.|.+|++||++-..++..+.  .|     .+.|..++..|.|++|++|-.|..+.+||++.++.++    |...  
T Consensus       198 ~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsad--  275 (350)
T KOG0641|consen  198 ASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSAD--  275 (350)
T ss_pred             EccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccc--
Confidence            467899999999999777776663  12     3578999999999999999999999999999876554    3334  


Q ss_pred             eeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          70 TFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        70 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                            +.+|.|+|...++++ +       +.|..|++-|++
T Consensus       276 ------ir~vrfsp~a~yllt-~-------syd~~ikltdlq  303 (350)
T KOG0641|consen  276 ------IRCVRFSPGAHYLLT-C-------SYDMKIKLTDLQ  303 (350)
T ss_pred             ------eeEEEeCCCceEEEE-e-------cccceEEEeecc
Confidence                  446677877766654 4       789999998875

>KOG1539|consensus

Probab=99.37  E-value=1.5e-11  Score=83.34  Aligned_cols=99  Identities=13%  Similarity=0.154  Sum_probs=87.7

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      .++.+|.++||++++++.++.+.++...|.++.-+|--..++.|..+|+|.+++++..+....    ....|+.++.++|
T Consensus       177 vGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s----Fk~d~g~VtslSF  252 (910)
T KOG1539|consen  177 VGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS----FKQDWGRVTSLSF  252 (910)
T ss_pred             EeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE----EEccccceeEEEe
Confidence            467889999999999999999999999999999999999999999999999999998877651    2234678889999


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..++..++++|       ...|.+.+|||+
T Consensus       253 rtDG~p~las~-------~~~G~m~~wDLe  275 (910)
T KOG1539|consen  253 RTDGNPLLASG-------RSNGDMAFWDLE  275 (910)
T ss_pred             ccCCCeeEEec-------cCCceEEEEEcC
Confidence            99999999998       777889999985

>KOG0640|consensus

Probab=99.36  E-value=4e-12  Score=78.30  Aligned_cols=100  Identities=12%  Similarity=0.173  Sum_probs=75.6

Q ss_pred             CcccccCeeeecCCCCceeeeeee--cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLT--QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      ++++.|++|+++|+........++  .-...|.++.|+|.|.+|+.|.+-..+++||+++.+++....+-..+. ..++.
T Consensus       188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht-~ai~~  266 (430)
T KOG0640|consen  188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT-GAITQ  266 (430)
T ss_pred             EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc-cceeE
Confidence            468899999999997543222222  246789999999999999999999999999999877765322222222 45677


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      |.+++.+... +++       +.||.|++||
T Consensus       267 V~Ys~t~~lY-vTa-------SkDG~IklwD  289 (430)
T KOG0640|consen  267 VRYSSTGSLY-VTA-------SKDGAIKLWD  289 (430)
T ss_pred             EEecCCccEE-EEe-------ccCCcEEeec
Confidence            8888888665 666       8999999998

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.36  E-value=6.7e-12  Score=55.41  Aligned_cols=39  Identities=26%  Similarity=0.492  Sum_probs=36.8

Q ss_pred             ceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEe
Q psy8803          17 IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWT   55 (111)
Q Consensus        17 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~   55 (111)
                      ++++..+.+|.+.|.+++|+|+++.|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0643|consensus

Probab=99.36  E-value=4.5e-12  Score=76.47  Aligned_cols=99  Identities=14%  Similarity=0.116  Sum_probs=76.2

Q ss_pred             ccccCeeeecCCCCce-eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee---eeccee---------
Q psy8803           3 SWYEEYKRLDYHTPIV-ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK---YSHDMK---------   69 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~---------   69 (111)
                      +-.||.|.+||+++++ .+..-+.|...|..+++++|..++++++.|.+-++||+++..+++   -..+++         
T Consensus       165 Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d  244 (327)
T KOG0643|consen  165 GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD  244 (327)
T ss_pred             ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccc
Confidence            4568999999999985 444557899999999999999999999999999999988642221   001111         


Q ss_pred             ---------------------------------------eeecCceeeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          70 ---------------------------------------TFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        70 ---------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                                                             ...+.|+++++|+|++..+ ++|       +.||.|++.-
T Consensus       245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksY-sSG-------GEDG~VR~h~  315 (327)
T KOG0643|consen  245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSY-SSG-------GEDGYVRLHH  315 (327)
T ss_pred             eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccc-ccC-------CCCceEEEEE
Confidence                                                   1334577999999999775 777       8899998863

>KOG0288|consensus

Probab=99.35  E-value=2.1e-11  Score=77.12  Aligned_cols=99  Identities=14%  Similarity=0.169  Sum_probs=76.5

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-eecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~v~   80 (111)
                      ++=+|++|++||+++..+......+. .|..+..++++..+++++.|.++.+.|+++....+ ......... +-.+-+.
T Consensus       317 SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a-sDwtrvv  394 (459)
T KOG0288|consen  317 SGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA-SDWTRVV  394 (459)
T ss_pred             ecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccc-cccceeE
Confidence            34578999999999888887777554 99999999999999999999999999999865443 211111111 1245789


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      |+|++.++ ++|       +.||.|.||++
T Consensus       395 fSpd~~Yv-aAG-------S~dgsv~iW~v  416 (459)
T KOG0288|consen  395 FSPDGSYV-AAG-------SADGSVYIWSV  416 (459)
T ss_pred             ECCCCcee-eec-------cCCCcEEEEEc
Confidence            99999886 555       88999999986

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.34  E-value=4.3e-11  Score=73.83  Aligned_cols=97  Identities=8%  Similarity=0.083  Sum_probs=73.1

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEE-EEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYF-ATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +...|+.+++||..+++.+..+..+. .+..+.|+|+++.+ ++++.++.+.+||..+.+.......   .  .....++
T Consensus         6 s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~--~~~~~~~   79 (300)
T TIGR03866         6 SNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS---G--PDPELFA   79 (300)
T ss_pred             EecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC---C--CCccEEE
Confidence            56789999999999888888887554 46789999998865 6677889999999987655432111   0  1234578


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++|++..+++++       ..++.|.+||++
T Consensus        80 ~~~~g~~l~~~~-------~~~~~l~~~d~~  103 (300)
T TIGR03866        80 LHPNGKILYIAN-------EDDNLVTVIDIE  103 (300)
T ss_pred             ECCCCCEEEEEc-------CCCCeEEEEECC
Confidence            899998887766       667899999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0278|consensus

Probab=99.34  E-value=2.5e-13  Score=81.34  Aligned_cols=94  Identities=17%  Similarity=0.250  Sum_probs=74.4

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee-----eeecceeeeecCc
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV-----KYSHDMKTFSWKY   75 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-----~~~~~~~~~~~~~   75 (111)
                      |+..-|=+-++||..+|..++.|+ |...|..++|+.|.+.|++|+.++.+++||++.....     .|...++.+.|  
T Consensus        75 asaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~w--  151 (334)
T KOG0278|consen   75 ASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW--  151 (334)
T ss_pred             hhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEE--
Confidence            345567788999999999999887 9999999999999999999999999999999865432     25556665555  


Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                            .-.+..++.+        ..|+.||+||.|
T Consensus       152 ------c~eD~~iLSS--------add~tVRLWD~r  173 (334)
T KOG0278|consen  152 ------CHEDKCILSS--------ADDKTVRLWDHR  173 (334)
T ss_pred             ------eccCceEEee--------ccCCceEEEEec
Confidence                  4455565553        578999999975

>KOG1188|consensus

Probab=99.34  E-value=8.3e-12  Score=77.30  Aligned_cols=104  Identities=21%  Similarity=0.225  Sum_probs=80.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcC--CCcEEEEEeCCCeEEEEecCCCceee------ee-cceeee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSH--NGRYFATCSKDGYILVWTSSYPSKVK------YS-HDMKTF   71 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~~~d~~i~iw~~~~~~~~~------~~-~~~~~~   71 (111)
                      |++...|.|++||..+++.+..|+++...+..+.|..  ..+.+.+++.||+|++||++......      +. .+..++
T Consensus        44 av~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~l  123 (376)
T KOG1188|consen   44 AVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICL  123 (376)
T ss_pred             EEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEe
Confidence            4678899999999999999999999999999999977  36788999999999999998631110      11 001111


Q ss_pred             ec----------------------------------------CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          72 SW----------------------------------------KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        72 ~~----------------------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.                                        .-++.+.|+|.+..++.+|       +.||-|.++|++
T Consensus       124 d~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG-------SvDGLvnlfD~~  196 (376)
T KOG1188|consen  124 DLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG-------SVDGLVNLFDTK  196 (376)
T ss_pred             eccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee-------cccceEEeeecC
Confidence            10                                        0136899999999999999       999999999974

>KOG0270|consensus

Probab=99.33  E-value=3.3e-12  Score=81.12  Aligned_cols=100  Identities=19%  Similarity=0.211  Sum_probs=76.1

Q ss_pred             CcccccCeeeecCCCC---ceeeeee------------------ecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCC
Q psy8803           1 KKSWYEEYKRLDYHTP---IVETEVL------------------TQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~---~~~~~~~------------------~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~   58 (111)
                      |.+..|..|.|||+.-   -.+...|                  .+|+..|..+.|... .+.|++||.|.++++||+..
T Consensus       196 AiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~  275 (463)
T KOG0270|consen  196 AIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT  275 (463)
T ss_pred             EEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC
Confidence            5678899999999841   1111122                  268888999999876 67899999999999999998


Q ss_pred             CceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          59 PSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +++...   +. ..-..+++++|+|....++.+|       +.|++|++.|.|
T Consensus       276 g~p~~s---~~-~~~k~Vq~l~wh~~~p~~LLsG-------s~D~~V~l~D~R  317 (463)
T KOG0270|consen  276 GKPKSS---IT-HHGKKVQTLEWHPYEPSVLLSG-------SYDGTVALKDCR  317 (463)
T ss_pred             CCccee---hh-hcCCceeEEEecCCCceEEEec-------cccceEEeeecc
Confidence            776541   11 2225677788888888888998       999999999976

>KOG4378|consensus

Probab=99.33  E-value=9.7e-12  Score=80.54  Aligned_cols=97  Identities=14%  Similarity=0.122  Sum_probs=76.4

Q ss_pred             cccccCeeeecCCCCceeeeee-ecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVL-TQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      +.+++|.|.+||.....++..+ +.|..+...|+|+|. ..+|++.+.|++|.+||++......    ... +-.|...|
T Consensus       182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----~l~-y~~Plstv  256 (673)
T KOG4378|consen  182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----RLT-YSHPLSTV  256 (673)
T ss_pred             eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----eee-ecCCccee
Confidence            4678999999999976666655 689999999999996 5689999999999999998644322    111 12567789


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|.+++.++ +.|       ...|.|..||+|
T Consensus       257 af~~~G~~L-~aG-------~s~G~~i~YD~R  280 (673)
T KOG4378|consen  257 AFSECGTYL-CAG-------NSKGELIAYDMR  280 (673)
T ss_pred             eecCCceEE-Eee-------cCCceEEEEecc
Confidence            999888665 666       778999999987

>KOG2096|consensus

Probab=99.32  E-value=9.4e-12  Score=76.85  Aligned_cols=84  Identities=23%  Similarity=0.304  Sum_probs=64.6

Q ss_pred             eeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCcc
Q psy8803          20 TEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQ   99 (111)
Q Consensus        20 ~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   99 (111)
                      +..|++|.+.|.+++|+.||..|++++.|+.|++|++++.....|..--..+.....+.|+|.|+...++++.       
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~-------  151 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSV-------  151 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEE-------
Confidence            3456799999999999999999999999999999999875443332111123334567899999999988887       


Q ss_pred             ccCceEEEeec
Q psy8803         100 STSGEIAVFSL  110 (111)
Q Consensus       100 ~~~~~i~iw~~  110 (111)
                      -..+++++|.+
T Consensus       152 ~~g~~l~vyk~  162 (420)
T KOG2096|consen  152 KRGNKLCVYKL  162 (420)
T ss_pred             ccCCEEEEEEe
Confidence            56777888864

>KOG0973|consensus

Probab=99.31  E-value=2.6e-11  Score=83.56  Aligned_cols=58  Identities=26%  Similarity=0.281  Sum_probs=54.0

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      |+.+.|++|-||+..+-+.+..+.+|++.|..+.|+|-|++|++.+.|+++++|++.+
T Consensus       145 vS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d  202 (942)
T KOG0973|consen  145 VSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD  202 (942)
T ss_pred             EEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc
Confidence            3567899999999999999999999999999999999999999999999999999654

>KOG0296|consensus

Probab=99.31  E-value=2.5e-11  Score=75.76  Aligned_cols=93  Identities=12%  Similarity=0.117  Sum_probs=73.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~   76 (111)
                      |.++-||+|-|||+..-...+.+. |...|..+.|-+ ..+|++++.+|.++.||.+++++..    |...|        
T Consensus       302 A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~I--------  371 (399)
T KOG0296|consen  302 ACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGI--------  371 (399)
T ss_pred             hcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchhe--------
Confidence            568899999999998666555544 888999999998 7889999999999999999987654    44444        


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +..+.+|+.+.+ +++       +.|++.+|++++
T Consensus       372 l~f~ls~~~~~v-vT~-------s~D~~a~VF~v~  398 (399)
T KOG0296|consen  372 LDFALSPQKRLV-VTV-------SDDNTALVFEVP  398 (399)
T ss_pred             eEEEEcCCCcEE-EEe-------cCCCeEEEEecC
Confidence            445566666655 555       889999999863

>KOG0308|consensus

Probab=99.28  E-value=2.7e-11  Score=80.29  Aligned_cols=95  Identities=14%  Similarity=0.215  Sum_probs=73.9

Q ss_pred             CcccccCeeeecCCCCce----------eeeeee-cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee----eee
Q psy8803           1 KKSWYEEYKRLDYHTPIV----------ETEVLT-QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV----KYS   65 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~----------~~~~~~-~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~----~~~   65 (111)
                      |+++-|+.|.+||++.+.          ....+. |+...|+.++..+.|..|++|+..+.+++||.++....    +|.
T Consensus       134 aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT  213 (735)
T KOG0308|consen  134 ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT  213 (735)
T ss_pred             EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccc
Confidence            578889999999999762          223333 78889999999999999999999999999999985432    365


Q ss_pred             cceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          66 HDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        66 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..++.+.        .++++..+ .++       +.|++|++||+.
T Consensus       214 dNVr~ll--------~~dDGt~~-ls~-------sSDgtIrlWdLg  243 (735)
T KOG0308|consen  214 DNVRVLL--------VNDDGTRL-LSA-------SSDGTIRLWDLG  243 (735)
T ss_pred             cceEEEE--------EcCCCCeE-eec-------CCCceEEeeecc
Confidence            5565544        45677776 455       789999999984

>KOG1009|consensus

Probab=99.27  E-value=4.3e-11  Score=75.57  Aligned_cols=103  Identities=18%  Similarity=0.224  Sum_probs=72.0

Q ss_pred             CcccccCeeeecCCCCc---------eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce------e---
Q psy8803           1 KKSWYEEYKRLDYHTPI---------VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK------V---   62 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~---------~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~------~---   62 (111)
                      ||+.-|..|+||-++.+         +....|..|+..|.++.|+|+|.+|++|+.++.+.+|-......      .   
T Consensus        30 aT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~  109 (434)
T KOG1009|consen   30 ATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLN  109 (434)
T ss_pred             ecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhC
Confidence            57889999999999643         34556778999999999999999999999999999997762100      0   


Q ss_pred             eeecceeee---ecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          63 KYSHDMKTF---SWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        63 ~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ...-.+...   .-.-+..++|+|++..+ +++       +.|+.+.+||++
T Consensus       110 ke~w~v~k~lr~h~~diydL~Ws~d~~~l-~s~-------s~dns~~l~Dv~  153 (434)
T KOG1009|consen  110 KEKWVVKKVLRGHRDDIYDLAWSPDSNFL-VSG-------SVDNSVRLWDVH  153 (434)
T ss_pred             ccceEEEEEecccccchhhhhccCCCcee-eee-------eccceEEEEEec
Confidence            000000000   01223445666676554 666       899999999974

>KOG0299|consensus

Probab=99.27  E-value=1.7e-11  Score=78.28  Aligned_cols=58  Identities=14%  Similarity=0.175  Sum_probs=54.0

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      |++.-|.++.||+..+.+++..|.+|.+.|.+++|-....-+.+++.|+.+++|++..
T Consensus       218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             EecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence            5778899999999999999999999999999999998888899999999999999875

>KOG0321|consensus

Probab=99.26  E-value=1.6e-11  Score=81.14  Aligned_cols=101  Identities=14%  Similarity=0.151  Sum_probs=77.1

Q ss_pred             cccccCeeeecCCCCce------eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCc
Q psy8803           2 KSWYEEYKRLDYHTPIV------ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKY   75 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~------~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~   75 (111)
                      .+.-||.|.++|.+...      .+..+..|...|..+.|.|-...|++++.|.++++||++...+.+..  +.-..-..
T Consensus        69 vadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~--~~~GH~~S  146 (720)
T KOG0321|consen   69 VADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR--LNLGHTGS  146 (720)
T ss_pred             EecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce--eecccccc
Confidence            45678999999987532      24566689999999999996678999999999999999876554411  11001123


Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.+++|.|.+..++++|       +.|+.|.|||+|
T Consensus       147 vkS~cf~~~n~~vF~tG-------gRDg~illWD~R  175 (720)
T KOG0321|consen  147 VKSECFMPTNPAVFCTG-------GRDGEILLWDCR  175 (720)
T ss_pred             cchhhhccCCCcceeec-------cCCCcEEEEEEe
Confidence            34678999999999999       999999999986

>KOG0288|consensus

Probab=99.26  E-value=6e-11  Score=75.12  Aligned_cols=98  Identities=16%  Similarity=0.175  Sum_probs=75.6

Q ss_pred             cccccCeeeecCCCCceeeeeeecc----cccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCcee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQH----THQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~----~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   77 (111)
                      +++-|.++.+.|.+..+....+.+.    .+....+.|||++.++++|+.|+.++||++.++++......-.+  ...++
T Consensus       358 sssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s--~~aI~  435 (459)
T KOG0288|consen  358 SSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS--NAAIT  435 (459)
T ss_pred             eecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCC--CcceE
Confidence            4677899999999988777766532    34578899999999999999999999999999887653221111  12478


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      +++|+|.+.+++.+        +.++.+.+|.
T Consensus       436 s~~W~~sG~~Llsa--------dk~~~v~lW~  459 (459)
T KOG0288|consen  436 SLSWNPSGSGLLSA--------DKQKAVTLWT  459 (459)
T ss_pred             EEEEcCCCchhhcc--------cCCcceEecC
Confidence            89999999888663        6788899883

>KOG1036|consensus

Probab=99.25  E-value=9.8e-11  Score=71.71  Aligned_cols=91  Identities=15%  Similarity=0.166  Sum_probs=70.0

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee---eecceeeeecCceee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK---YSHDMKTFSWKYTQY   78 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~   78 (111)
                      ++.-||.|+.+|++.++.. .+..|...+.|+.+++....+++|+-|++|++||.+......   ...++.++..     
T Consensus        70 ~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v-----  143 (323)
T KOG1036|consen   70 TGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV-----  143 (323)
T ss_pred             EeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec-----
Confidence            5778999999999977654 356699999999999999999999999999999999633222   2234555543     


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                           .+..|++ |       ..++.+.+||+|
T Consensus       144 -----~g~~LvV-g-------~~~r~v~iyDLR  163 (323)
T KOG1036|consen  144 -----SGNRLVV-G-------TSDRKVLIYDLR  163 (323)
T ss_pred             -----cCCEEEE-e-------ecCceEEEEEcc
Confidence                 4555544 3       568999999987

>KOG0301|consensus

Probab=99.23  E-value=2.6e-10  Score=76.16  Aligned_cols=91  Identities=14%  Similarity=0.195  Sum_probs=67.7

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC-Cceeeee-cceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY-PSKVKYS-HDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~-~~~~~~~~~~~~~v   79 (111)
                      +.++||.|++|++ +++.+..+.+|+..+++++..++++.++++++|+++++|+... .++..+. ..+++        +
T Consensus       195 ScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWs--------a  265 (745)
T KOG0301|consen  195 SCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWS--------A  265 (745)
T ss_pred             eecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEE--------E
Confidence            4578999999999 5888888999999999999888999999999999999998762 1112221 12322        3


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .+-+++..  ++|       +.||.|+||-.
T Consensus       266 ~~L~NgDI--vvg-------~SDG~VrVfT~  287 (745)
T KOG0301|consen  266 KVLLNGDI--VVG-------GSDGRVRVFTV  287 (745)
T ss_pred             EEeeCCCE--EEe-------ccCceEEEEEe
Confidence            33334443  344       77999999964

>KOG1007|consensus

Probab=99.22  E-value=6.7e-11  Score=72.30  Aligned_cols=93  Identities=18%  Similarity=0.321  Sum_probs=72.5

Q ss_pred             ccccCeeeecCCCCceeeeeee-cccccEEEEEEcCCC-cEEEEEeCCCeEEEEecCCCcee-----eeecceeeeecCc
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLT-QHTHQVLHVSFSHNG-RYFATCSKDGYILVWTSSYPSKV-----KYSHDMKTFSWKY   75 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~-----~~~~~~~~~~~~~   75 (111)
                      ...|++++.||.++.+....++ +|...|..+.|.|+. .+|++|+.|+.+++||.+..+..     .|.-.++      
T Consensus       189 tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW------  262 (370)
T KOG1007|consen  189 TTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW------  262 (370)
T ss_pred             EeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEE------
Confidence            3568999999999877766664 788899999999985 57899999999999999874322     1333443      


Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                        +|.|+|....++.++       +.|..|.+|..
T Consensus       263 --~VRfn~~hdqLiLs~-------~SDs~V~Lsca  288 (370)
T KOG1007|consen  263 --AVRFNPEHDQLILSG-------GSDSAVNLSCA  288 (370)
T ss_pred             --EEEecCccceEEEec-------CCCceeEEEec
Confidence              577888777777887       77888888753

>KOG0642|consensus

Probab=99.21  E-value=1.3e-10  Score=75.93  Aligned_cols=93  Identities=16%  Similarity=0.170  Sum_probs=71.1

Q ss_pred             cccccCeeeecCCC---C-----ceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC--------------
Q psy8803           2 KSWYEEYKRLDYHT---P-----IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP--------------   59 (111)
Q Consensus         2 ~~~~d~~i~iw~~~---~-----~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~--------------   59 (111)
                      +.+-||++++|++.   .     -+++.+|.+|.++|.|++..+.+..+.+|+-|++|+.|++...              
T Consensus       311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~  390 (577)
T KOG0642|consen  311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG  390 (577)
T ss_pred             EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence            56789999999992   1     2688999999999999999999999999999999999976532              


Q ss_pred             ceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          60 SKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ...+|...++        .+++++....| .++       +.|++++.|+.
T Consensus       391 ~l~Ghtdavw--------~l~~s~~~~~L-lsc-------s~DgTvr~w~~  425 (577)
T KOG0642|consen  391 TLLGHTDAVW--------LLALSSTKDRL-LSC-------SSDGTVRLWEP  425 (577)
T ss_pred             ceecccccee--------eeeecccccce-eee-------cCCceEEeecc
Confidence            1122333333        45667665554 444       78999999974

>KOG0307|consensus

Probab=99.21  E-value=8.2e-12  Score=86.46  Aligned_cols=102  Identities=22%  Similarity=0.260  Sum_probs=77.5

Q ss_pred             CcccccCeeeecCCCC---c---eeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeecceeeeec
Q psy8803           1 KKSWYEEYKRLDYHTP---I---VETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSW   73 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~---~---~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~   73 (111)
                      |.+.-||.|-+||...   +   +.+.++..|++.|..+.|.+. +++|++|+.|+.|.|||+.......+.....-  -
T Consensus        84 aGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~--~  161 (1049)
T KOG0307|consen   84 AGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP--P  161 (1049)
T ss_pred             eccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC--c
Confidence            4678899999999975   2   345566789999999999997 55999999999999999987544332211100  1


Q ss_pred             CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          74 KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..+.+++|+..-.++++++       +.++.+.|||+|
T Consensus       162 ~eI~~lsWNrkvqhILAS~-------s~sg~~~iWDlr  192 (1049)
T KOG0307|consen  162 SEIKCLSWNRKVSHILASG-------SPSGRAVIWDLR  192 (1049)
T ss_pred             ccceEeccchhhhHHhhcc-------CCCCCceecccc
Confidence            2344666777888999998       788889999997

>KOG0294|consensus

Probab=99.20  E-value=3.5e-10  Score=69.72  Aligned_cols=95  Identities=14%  Similarity=0.153  Sum_probs=72.2

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      ++..||.|.+|+..+-+++..+++|.+.|..++.+|.+++=++.+.|+.+++||+-.++...    +..+. .....|.|
T Consensus       102 S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~----v~~L~-~~at~v~w  176 (362)
T KOG0294|consen  102 SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF----VLNLK-NKATLVSW  176 (362)
T ss_pred             eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce----eeccC-CcceeeEE
Confidence            45789999999999999999999999999999999999999999999999999986554322    11111 11223677


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +|.+.++++.+         .+.|-||.+
T Consensus       177 ~~~Gd~F~v~~---------~~~i~i~q~  196 (362)
T KOG0294|consen  177 SPQGDHFVVSG---------RNKIDIYQL  196 (362)
T ss_pred             cCCCCEEEEEe---------ccEEEEEec
Confidence            77777776643         455766654

>KOG0301|consensus

Probab=99.20  E-value=1.3e-10  Score=77.53  Aligned_cols=93  Identities=17%  Similarity=0.219  Sum_probs=53.2

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      |++-|.+|++|.-  ++.+..|.+|++.|+.+++-++ ..|++++.||.|++|++.......+.+    +. +.+.+++.
T Consensus       156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~ge~l~~~~g----ht-n~vYsis~  227 (745)
T KOG0301|consen  156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLDGEVLLEMHG----HT-NFVYSISM  227 (745)
T ss_pred             eccCcceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEeccCceeeeeec----cc-eEEEEEEe
Confidence            4555666666654  4555666667777777666543 344566666777777764433222110    00 22334554


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ..++..+ +++       +.|++++||+.
T Consensus       228 ~~~~~~I-vs~-------gEDrtlriW~~  248 (745)
T KOG0301|consen  228 ALSDGLI-VST-------GEDRTLRIWKK  248 (745)
T ss_pred             cCCCCeE-EEe-------cCCceEEEeec
Confidence            4455555 454       69999999974

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.20  E-value=7.5e-10  Score=68.33  Aligned_cols=97  Identities=11%  Similarity=0.084  Sum_probs=68.0

Q ss_pred             ccccCeeeecCCCCceeeeeeeccc-----c--cEEEEEEcCCCcEE-EEEeCCCeEEEEecCCCceeeeecceeeeecC
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHT-----H--QVLHVSFSHNGRYF-ATCSKDGYILVWTSSYPSKVKYSHDMKTFSWK   74 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~-----~--~v~~i~~s~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~   74 (111)
                      +..++.+++||..+++.+..+..+.     .  ....+.|+|+++.+ ++.+.+..+.+||.++.+.....   . . -.
T Consensus       175 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~---~-~-~~  249 (300)
T TIGR03866       175 SEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL---L-V-GQ  249 (300)
T ss_pred             cCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE---E-e-CC
Confidence            4468999999999887766654221     1  23468899999874 44455678999999876554321   1 1 13


Q ss_pred             ceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .+..++|+|++..++++.       ..++.|.+||++
T Consensus       250 ~~~~~~~~~~g~~l~~~~-------~~~~~i~v~d~~  279 (300)
T TIGR03866       250 RVWQLAFTPDEKYLLTTN-------GVSNDVSVIDVA  279 (300)
T ss_pred             CcceEEECCCCCEEEEEc-------CCCCeEEEEECC
Confidence            455789999999887765       568899999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0647|consensus

Probab=99.20  E-value=1.9e-10  Score=70.54  Aligned_cols=91  Identities=14%  Similarity=0.128  Sum_probs=66.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCC--cEEEEEeCCCeEEEEecCCCceee---eecceeeeecCce
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNG--RYFATCSKDGYILVWTSSYPSKVK---YSHDMKTFSWKYT   76 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~~~~   76 (111)
                      +++-|+.+++||+.+++ ......|.+.|.++.|-+-.  ..|++|+-|++|+.||++....+.   ....+.+...   
T Consensus        89 ~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv---  164 (347)
T KOG0647|consen   89 SGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV---  164 (347)
T ss_pred             eeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc---
Confidence            46779999999999995 55667899999999998754  489999999999999999765543   1123333321   


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                             . .-+++.+       ..++.|.+++|+
T Consensus       165 -------~-~pm~vVa-------ta~r~i~vynL~  184 (347)
T KOG0647|consen  165 -------L-YPMAVVA-------TAERHIAVYNLE  184 (347)
T ss_pred             -------c-CceeEEE-------ecCCcEEEEEcC
Confidence                   2 2233333       568889999884

>KOG1332|consensus

Probab=99.19  E-value=7.5e-11  Score=70.54  Aligned_cols=103  Identities=17%  Similarity=0.170  Sum_probs=74.3

Q ss_pred             CcccccCeeeecCCCCce--eeeeeecccccEEEEEEcCC--CcEEEEEeCCCeEEEEecCCC--c-----eeeeeccee
Q psy8803           1 KKSWYEEYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSHN--GRYFATCSKDGYILVWTSSYP--S-----KVKYSHDMK   69 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~~--~~~l~s~~~d~~i~iw~~~~~--~-----~~~~~~~~~   69 (111)
                      |+.+|||.|-||....+.  ..+....|...|.+++|.|.  |-+|++++.||.|.+.+.+..  .     ...|...++
T Consensus        74 AScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvn  153 (299)
T KOG1332|consen   74 ASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVN  153 (299)
T ss_pred             eEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccc
Confidence            578999999999998773  45555689999999999996  678999999999999998753  1     122555566


Q ss_pred             eeecCcee----eEEEccCC-CEEEEeccccCCccccCceEEEeec
Q psy8803          70 TFSWKYTQ----YSQFNESD-TLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        70 ~~~~~~~~----~v~~~~~~-~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .+.|.|.+    .+...|.. .+-+++|       +-|+.|+||+.
T Consensus       154 sVswapa~~~g~~~~~~~~~~~krlvSg-------GcDn~VkiW~~  192 (299)
T KOG1332|consen  154 SVSWAPASAPGSLVDQGPAAKVKRLVSG-------GCDNLVKIWKF  192 (299)
T ss_pred             eeeecCcCCCccccccCcccccceeecc-------CCccceeeeec
Confidence            66665431    12222211 2446777       78999999975

>KOG1310|consensus

Probab=99.19  E-value=1.5e-10  Score=75.97  Aligned_cols=82  Identities=22%  Similarity=0.280  Sum_probs=65.0

Q ss_pred             eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEcc-CCCEEEEeccccCC
Q psy8803          19 ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE-SDTLLLVSGVHFGT   97 (111)
Q Consensus        19 ~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~   97 (111)
                      +...|+||++-|.|+.|..+|.+|++|+.|-.+.|||....+..+   .+....-..+.++.|-| ....++++|     
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh---sI~TgHtaNIFsvKFvP~tnnriv~sg-----  113 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH---SISTGHTANIFSVKFVPYTNNRIVLSG-----  113 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceee---eeecccccceeEEeeeccCCCeEEEec-----
Confidence            345678999999999999999999999999999999998655444   23222224455778888 566888888     


Q ss_pred             ccccCceEEEeec
Q psy8803          98 PQSTSGEIAVFSL  110 (111)
Q Consensus        98 ~~~~~~~i~iw~~  110 (111)
                        ..|..|+++|+
T Consensus       114 --AgDk~i~lfdl  124 (758)
T KOG1310|consen  114 --AGDKLIKLFDL  124 (758)
T ss_pred             --cCcceEEEEec
Confidence              88999999997

>KOG1063|consensus

Probab=99.18  E-value=1.6e-10  Score=77.15  Aligned_cols=87  Identities=17%  Similarity=0.269  Sum_probs=69.2

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce--------eeeecceeeeecCceeeE
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK--------VKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~v   79 (111)
                      -|++|+..+-..+..+.+|.-.|..++||||+++|++.+.|++..+|.......        ..|..-+...        
T Consensus       553 vI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc--------  624 (764)
T KOG1063|consen  553 VIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC--------  624 (764)
T ss_pred             EEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEc--------
Confidence            489999988888889999999999999999999999999999999998754221        1243344444        


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .|+|++.+ ++++       ++|.+|+||..
T Consensus       625 sW~pde~~-FaTa-------SRDK~VkVW~~  647 (764)
T KOG1063|consen  625 SWSPDEKY-FATA-------SRDKKVKVWEE  647 (764)
T ss_pred             ccCcccce-eEEe-------cCCceEEEEec
Confidence            45667766 5666       99999999975

>KOG0268|consensus

Probab=99.18  E-value=6.1e-11  Score=74.21  Aligned_cols=91  Identities=16%  Similarity=0.242  Sum_probs=69.4

Q ss_pred             ccccCeeeecCCCCc-eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce--eeee---cceeeeecCce
Q psy8803           3 SWYEEYKRLDYHTPI-VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK--VKYS---HDMKTFSWKYT   76 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~---~~~~~~~~~~~   76 (111)
                      ++-|..+.++|.+.. .++....+|.+.|..+.|+|.|+.|++|+.|++|+||..+.+..  ..|.   +.+.++.    
T Consensus       247 a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk----  322 (433)
T KOG0268|consen  247 ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVK----  322 (433)
T ss_pred             ccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEE----
Confidence            455777888888754 56777789999999999999999999999999999999876432  2232   2344444    


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                          |+-+ ..++.+|       +.|+.|++|.
T Consensus       323 ----~S~D-skyi~SG-------Sdd~nvRlWk  343 (433)
T KOG0268|consen  323 ----YSMD-SKYIISG-------SDDGNVRLWK  343 (433)
T ss_pred             ----Eecc-ccEEEec-------CCCcceeeee
Confidence                4544 4556888       9999999996

>KOG1272|consensus

Probab=99.17  E-value=6.8e-11  Score=75.96  Aligned_cols=92  Identities=15%  Similarity=0.170  Sum_probs=69.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      ++-..|+|.+|.....+++..+..|.+.|..+++.++|++++|.+.|..++|||++....+.   ....  -.+.+.+++
T Consensus       268 ~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~---t~~t--p~~a~~ls~  342 (545)
T KOG1272|consen  268 LGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH---TYRT--PHPASNLSL  342 (545)
T ss_pred             EcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc---eeec--CCCcccccc
Confidence            35578999999999999999999999999999999999999999999999999999765333   1111  123344556


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEe
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVF  108 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw  108 (111)
                      +..+ .+++         +....+.||
T Consensus       343 Sqkg-lLA~---------~~G~~v~iw  359 (545)
T KOG1272|consen  343 SQKG-LLAL---------SYGDHVQIW  359 (545)
T ss_pred             cccc-ceee---------ecCCeeeee
Confidence            6444 3333         345567777

>KOG1408|consensus

Probab=99.17  E-value=2.2e-10  Score=77.29  Aligned_cols=97  Identities=19%  Similarity=0.142  Sum_probs=81.0

Q ss_pred             cccccCeeeecCCCCceeeeeeec---ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQ---HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      +...|.-|+|||+.+++....|++   |++....+..+|.|.++++.+.|+++.++|..+++++..   +..+. ..++.
T Consensus       613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~---m~GHs-E~VTG  688 (1080)
T KOG1408|consen  613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ---MTGHS-EAVTG  688 (1080)
T ss_pred             EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh---hcCcc-hheee
Confidence            567899999999999999999975   667888899999999999999999999999999888762   33332 35667


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +.|.++..+++..        +.|+.|-||.+
T Consensus       689 ~kF~nDCkHlISv--------sgDgCIFvW~l  712 (1080)
T KOG1408|consen  689 VKFLNDCKHLISV--------SGDGCIFVWKL  712 (1080)
T ss_pred             eeecccchhheee--------cCCceEEEEEC
Confidence            8899999887653        67999999986

>KOG1445|consensus

Probab=99.17  E-value=6.1e-11  Score=79.07  Aligned_cols=95  Identities=15%  Similarity=0.176  Sum_probs=75.2

Q ss_pred             CcccccCeeeecCCCCc-------eeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCc----eeeeecce
Q psy8803           1 KKSWYEEYKRLDYHTPI-------VETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPS----KVKYSHDM   68 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~----~~~~~~~~   68 (111)
                      |+...||.|+||-+..+       .+...+++|...|+.+.|+|- .+.|++++.|-+|++||+.+..    ...|...+
T Consensus       644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqI  723 (1012)
T KOG1445|consen  644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQI  723 (1012)
T ss_pred             eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCce
Confidence            56789999999999753       455667889999999999996 7899999999999999998753    33466666


Q ss_pred             eeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          69 KTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..+        +|+|++..++..        +.|++|++++-|
T Consensus       724 f~~--------AWSpdGr~~AtV--------cKDg~~rVy~Pr  750 (1012)
T KOG1445|consen  724 FGI--------AWSPDGRRIATV--------CKDGTLRVYEPR  750 (1012)
T ss_pred             eEE--------EECCCCcceeee--------ecCceEEEeCCC
Confidence            554        557788877654        589999999753

>KOG4378|consensus

Probab=99.16  E-value=2.4e-10  Score=74.28  Aligned_cols=97  Identities=16%  Similarity=0.250  Sum_probs=78.9

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee---eeecceeeeecCceee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV---KYSHDMKTFSWKYTQY   78 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~   78 (111)
                      +++-.+.|+|||++.......+++|++.|.++.+.-...+|++++..|-|.|..+.+....   .+..      ...+..
T Consensus        96 sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s------gqsvRl  169 (673)
T KOG4378|consen   96 SGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS------GQSVRL  169 (673)
T ss_pred             ccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC------CCeEEE
Confidence            4566789999999977777888999999999999998999999999999999998875432   2210      012346


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.|+|....++.++       +.+|.|.+||++
T Consensus       170 l~ys~skr~lL~~a-------sd~G~VtlwDv~  195 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIA-------SDKGAVTLWDVQ  195 (673)
T ss_pred             eecccccceeeEee-------ccCCeEEEEecc
Confidence            78899999999998       999999999974

>KOG0640|consensus

Probab=99.16  E-value=1.9e-10  Score=71.06  Aligned_cols=96  Identities=21%  Similarity=0.262  Sum_probs=73.1

Q ss_pred             ccCeeeecCCCCceeeeee---ecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           5 YEEYKRLDYHTPIVETEVL---TQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~---~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      .-.++++||+++.++...-   .+|++.|.++.+++.+++.++++.||.|++||=-+.+++....  +.+.-+.+.+..|
T Consensus       236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~--~AH~gsevcSa~F  313 (430)
T KOG0640|consen  236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG--NAHGGSEVCSAVF  313 (430)
T ss_pred             CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH--hhcCCceeeeEEE
Confidence            3457899999988765543   3689999999999999999999999999999976655544111  1111234556678


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ..++.+++.+|        .|..+++|.+
T Consensus       314 tkn~kyiLsSG--------~DS~vkLWEi  334 (430)
T KOG0640|consen  314 TKNGKYILSSG--------KDSTVKLWEI  334 (430)
T ss_pred             ccCCeEEeecC--------Ccceeeeeee
Confidence            99999988764        8999999986

>KOG0639|consensus

Probab=99.16  E-value=4.8e-11  Score=77.57  Aligned_cols=58  Identities=12%  Similarity=0.051  Sum_probs=54.5

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP   59 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~   59 (111)
                      +...||-|.|||+.....+..|+||+..+.||..++||..|=+|+.|.+++.||++.+
T Consensus       526 sccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg  583 (705)
T KOG0639|consen  526 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG  583 (705)
T ss_pred             eeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh
Confidence            3568999999999999999999999999999999999999999999999999999864

>KOG2048|consensus

Probab=99.13  E-value=2e-09  Score=71.77  Aligned_cols=100  Identities=11%  Similarity=0.087  Sum_probs=79.5

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      ++.-+|.|.-||+.+++++..+....+.|+.++.+|.+..++.|++||.++.++...........-.+.  -+.+.+++|
T Consensus        85 S~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq--~sRvLslsw  162 (691)
T KOG2048|consen   85 SSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ--KSRVLSLSW  162 (691)
T ss_pred             eecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc--cceEEEEEe
Confidence            456789999999999999999998899999999999999999999999888888877665442111111  134556788


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|++..+ +.|       +.|+.|++||+.
T Consensus       163 ~~~~~~i-~~G-------s~Dg~Iriwd~~  184 (691)
T KOG2048|consen  163 NPTGTKI-AGG-------SIDGVIRIWDVK  184 (691)
T ss_pred             cCCccEE-Eec-------ccCceEEEEEcC
Confidence            8888776 556       889999999974

>KOG1007|consensus

Probab=99.13  E-value=2.5e-10  Score=69.84  Aligned_cols=98  Identities=16%  Similarity=0.181  Sum_probs=69.6

Q ss_pred             ccccCeeeecCCCCcee-eeeee-----cccccEEEEEEcC--CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecC
Q psy8803           3 SWYEEYKRLDYHTPIVE-TEVLT-----QHTHQVLHVSFSH--NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWK   74 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~-~~~~~-----~~~~~v~~i~~s~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~   74 (111)
                      +-.|..|.+|+...... +..+.     +|......-+|+|  +++.+++.+ |+++..||+++.....   ++......
T Consensus       140 sm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~---sI~dAHgq  215 (370)
T KOG1007|consen  140 SMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNN---SIEDAHGQ  215 (370)
T ss_pred             EeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhc---chhhhhcc
Confidence            34578899999976644 22221     3566777888998  578887776 6899999999754332   23322223


Q ss_pred             ceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .+..+.|+|...++++++       +.|+.|+|||.|
T Consensus       216 ~vrdlDfNpnkq~~lvt~-------gDdgyvriWD~R  245 (370)
T KOG1007|consen  216 RVRDLDFNPNKQHILVTC-------GDDGYVRIWDTR  245 (370)
T ss_pred             eeeeccCCCCceEEEEEc-------CCCccEEEEecc
Confidence            345667899999999999       889999999986

>KOG0641|consensus

Probab=99.12  E-value=1.8e-09  Score=64.43  Aligned_cols=93  Identities=15%  Similarity=0.117  Sum_probs=73.5

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce--------eeeecceeeeec
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK--------VKYSHDMKTFSW   73 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~--------~~~~~~~~~~~~   73 (111)
                      ++--|..+.+||++-+.++..+..|...|.|+.|+|...++++++.|.+|++-|+.....        ..|..++-    
T Consensus       248 sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i----  323 (350)
T KOG0641|consen  248 SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAI----  323 (350)
T ss_pred             eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceE----
Confidence            456688999999999999999999999999999999999999999999999999975321        11333332    


Q ss_pred             CceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          74 KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                          .+.|+|.+-.++. .       +.|.++.+|-+
T Consensus       324 ----~~rwh~~d~sfis-s-------sadkt~tlwa~  348 (350)
T KOG0641|consen  324 ----QCRWHPQDFSFIS-S-------SADKTATLWAL  348 (350)
T ss_pred             ----EEEecCccceeee-c-------cCcceEEEecc
Confidence                3456777666544 3       67999999975

>KOG0649|consensus

Probab=99.12  E-value=1.5e-09  Score=65.18  Aligned_cols=60  Identities=15%  Similarity=0.026  Sum_probs=53.2

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      ..|+.+.-||+++|+....++||++.|-++.--.....+++|++||++++||.++.+...
T Consensus       133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~  192 (325)
T KOG0649|consen  133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS  192 (325)
T ss_pred             cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE
Confidence            478999999999999999999999999999886666678899999999999999876554

>KOG1310|consensus

Probab=99.11  E-value=4.5e-10  Score=73.86  Aligned_cols=104  Identities=12%  Similarity=0.042  Sum_probs=76.4

Q ss_pred             CcccccCeeeecCCCCceeeeee-ecccccEEEEEEcCC--CcEEEEEeCCCeEEEEecCCCcee--eeecce----eee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVL-TQHTHQVLHVSFSHN--GRYFATCSKDGYILVWTSSYPSKV--KYSHDM----KTF   71 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~i~~s~~--~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~----~~~   71 (111)
                      ++++.|..+-|||....++++.+ ++|...|.++.|-|.  .+++++|..|..|+++|+...+..  -|....    ...
T Consensus        66 ~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~c  145 (758)
T KOG1310|consen   66 ASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSC  145 (758)
T ss_pred             eecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhh
Confidence            46888999999999988888777 589999999999995  578999999999999999752211  111111    111


Q ss_pred             ecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          72 SWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ....+.-++-.|.+...+-++       +.||+|+.+|+|
T Consensus       146 ht~rVKria~~p~~Phtfwsa-------sEDGtirQyDiR  178 (758)
T KOG1310|consen  146 HTDRVKRIATAPNGPHTFWSA-------SEDGTIRQYDIR  178 (758)
T ss_pred             hhhhhhheecCCCCCceEEEe-------cCCcceeeeccc
Confidence            112333456677776766776       899999999986

>KOG2919|consensus

Probab=99.10  E-value=5.6e-10  Score=69.25  Aligned_cols=97  Identities=23%  Similarity=0.318  Sum_probs=70.8

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe-CCCeEEEEecCCCceee-----eecceeeeecC
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS-KDGYILVWTSSYPSKVK-----YSHDMKTFSWK   74 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~-----~~~~~~~~~~~   74 (111)
                      |.+++-.++-||.-....++..+.+|.+.|..+.|.++|+.|.+|. .+.+|..||++....+.     |...       
T Consensus       224 a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~-------  296 (406)
T KOG2919|consen  224 AVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGD-------  296 (406)
T ss_pred             eeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccC-------
Confidence            3456777777888777788888899999999999999999888876 47799999998743221     2211       


Q ss_pred             ceeeEEEcc-CCCEEEEeccccCCccccCceEEEeecC
Q psy8803          75 YTQYSQFNE-SDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        75 ~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .-|-|-|.- +...++++|       +.+|.|++||++
T Consensus       297 TNQRI~FDld~~~~~LasG-------~tdG~V~vwdlk  327 (406)
T KOG2919|consen  297 TNQRILFDLDPKGEILASG-------DTDGSVRVWDLK  327 (406)
T ss_pred             ccceEEEecCCCCceeecc-------CCCccEEEEecC
Confidence            112333433 333556877       899999999974

>KOG0646|consensus

Probab=99.09  E-value=2e-09  Score=69.09  Aligned_cols=100  Identities=15%  Similarity=0.116  Sum_probs=75.7

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCc--ee------e--eeccee--
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS--KV------K--YSHDMK--   69 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~--~~------~--~~~~~~--   69 (111)
                      |++-|.++++||+..+..+.++. ....+.++..+|-.+.+..|.++|.|.+.++....  ..      .  +...++  
T Consensus       193 TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~  271 (476)
T KOG0646|consen  193 TASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL  271 (476)
T ss_pred             EecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee
Confidence            67889999999999998888776 56789999999999999999999999999886422  11      0  111111  


Q ss_pred             -eee-cCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          70 -TFS-WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        70 -~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                       ... -+++++++.+-++.. +.+|       +.||+++|||+
T Consensus       272 ~Gh~~~~~ITcLais~Dgtl-LlSG-------d~dg~VcvWdi  306 (476)
T KOG0646|consen  272 VGHENESAITCLAISTDGTL-LLSG-------DEDGKVCVWDI  306 (476)
T ss_pred             ccccCCcceeEEEEecCccE-EEee-------CCCCCEEEEec
Confidence             111 136778888877766 4777       89999999996

>KOG1538|consensus

Probab=99.09  E-value=1.5e-09  Score=73.01  Aligned_cols=70  Identities=19%  Similarity=0.281  Sum_probs=56.6

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce--eeeecceeeeecCc
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK--VKYSHDMKTFSWKY   75 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~   75 (111)
                      +..+.+||.+.|..+..+++|...|+|++|+.||..+++|+.|+.+.+|...-.-.  ..|...+.|+.+.|
T Consensus        32 g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP  103 (1081)
T KOG1538|consen   32 GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNP  103 (1081)
T ss_pred             CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCc
Confidence            45688999999999999999999999999999999999999999999998754222  22545555555444

>KOG1034|consensus

Probab=99.09  E-value=3.7e-10  Score=70.03  Aligned_cols=57  Identities=26%  Similarity=0.353  Sum_probs=52.4

Q ss_pred             cccccCeeeecCCCCceeeeee---ecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVL---TQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~---~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      +.+.|.+||+|++.+..++..|   ++|.+.|..+.|++++..|++++.|.+|++|++..
T Consensus       153 s~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  153 SASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             EecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            4688999999999999888877   47999999999999999999999999999999983

>KOG0300|consensus

Probab=99.08  E-value=3.2e-10  Score=70.40  Aligned_cols=54  Identities=20%  Similarity=0.210  Sum_probs=51.8

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEe
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWT   55 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~   55 (111)
                      +.+-|.+-+||.+++++++..+.||.+.|.++.|++.+.++++++.|++-.||.
T Consensus       165 tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  165 TASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             ecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence            567899999999999999999999999999999999999999999999999997

>KOG0322|consensus

Probab=99.07  E-value=9.5e-11  Score=70.80  Aligned_cols=56  Identities=25%  Similarity=0.322  Sum_probs=53.9

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEec
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTS   56 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~   56 (111)
                      ||.+||+.||+|.-++..++..++-|.+.|.+++|+|+..+++.++.|.+|.+|++
T Consensus       267 ATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  267 ATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            68899999999999999999999999999999999999999999999999999986

>KOG0646|consensus

Probab=99.07  E-value=7.7e-10  Score=70.98  Aligned_cols=92  Identities=21%  Similarity=0.259  Sum_probs=69.2

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC---------ceee----eecceeee
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP---------SKVK----YSHDMKTF   71 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~---------~~~~----~~~~~~~~   71 (111)
                      -.|.+.+|.+.+|+++..+.+|=..|.|+.|+-|+.+|++|+.||.+.+|++-..         .+.+    |.-++..+
T Consensus       101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl  180 (476)
T KOG0646|consen  101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDL  180 (476)
T ss_pred             ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEE
Confidence            5678999999999999999999999999999999999999999999999987431         1111    33333333


Q ss_pred             ecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          72 SWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ..      .+.+...++ .+.       +.|+++++||+
T Consensus       181 ~i------g~Gg~~~rl-~Ta-------S~D~t~k~wdl  205 (476)
T KOG0646|consen  181 QI------GSGGTNARL-YTA-------SEDRTIKLWDL  205 (476)
T ss_pred             Ee------cCCCccceE-EEe-------cCCceEEEEEe
Confidence            22      233333454 444       78999999997

>KOG1273|consensus

Probab=99.07  E-value=8.3e-10  Score=68.34  Aligned_cols=70  Identities=19%  Similarity=0.218  Sum_probs=56.4

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          30 VLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        30 v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      ..|+.|++-|.+||.|+.||.+-|||+.+.....    +......|+++++|++++..++++        +.|..|.+||
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar----~lsaH~~pi~sl~WS~dgr~Llts--------S~D~si~lwD   93 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR----MLSAHVRPITSLCWSRDGRKLLTS--------SRDWSIKLWD   93 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh----hhhccccceeEEEecCCCCEeeee--------cCCceeEEEe
Confidence            7899999999999999999999999998755332    222223577788889999887663        7899999999


Q ss_pred             cC
Q psy8803         110 LQ  111 (111)
Q Consensus       110 ~~  111 (111)
                      +.
T Consensus        94 l~   95 (405)
T KOG1273|consen   94 LL   95 (405)
T ss_pred             cc
Confidence            74

>KOG0299|consensus

Probab=99.05  E-value=1.3e-09  Score=69.92  Aligned_cols=97  Identities=19%  Similarity=0.192  Sum_probs=69.2

Q ss_pred             ccccCeeeecCCCCceee----ee------------e--ecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeee
Q psy8803           3 SWYEEYKRLDYHTPIVET----EV------------L--TQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKY   64 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~----~~------------~--~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~   64 (111)
                      .+.|++|.=|++.+++..    .+            .  ++|.+.+.+++.++|+++|++|+.|..+.||+.++....+.
T Consensus       160 ask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~  239 (479)
T KOG0299|consen  160 ASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV  239 (479)
T ss_pred             cCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhc
Confidence            467888888888766421    00            0  36888999999999999999999999999999998765541


Q ss_pred             ecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          65 SHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        65 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                          ....-..+.+++|......+ .++       +.|+.|++|+++
T Consensus       240 ----~~ghr~~V~~L~fr~gt~~l-ys~-------s~Drsvkvw~~~  274 (479)
T KOG0299|consen  240 ----FKGHRGAVSSLAFRKGTSEL-YSA-------SADRSVKVWSID  274 (479)
T ss_pred             ----ccccccceeeeeeecCccce-eee-------ecCCceEEEehh
Confidence                11111344456666655554 334       789999999863

>KOG4328|consensus

Probab=99.05  E-value=3.7e-10  Score=72.41  Aligned_cols=100  Identities=16%  Similarity=0.108  Sum_probs=72.5

Q ss_pred             cccccCeeeecCCCCce--eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      ++++||+|++-|++.+.  .+..+..-...+..+.|+.+...++.+..-|...+||.+........  .. +.-..+.++
T Consensus       252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~--~~-lh~kKI~sv  328 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN--LR-LHKKKITSV  328 (498)
T ss_pred             eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh--hh-hhhccccee
Confidence            57999999999998663  34344334456677888888777777777779999999976442210  11 111244578


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +++|...++++++       +.|++.+|||+|
T Consensus       329 ~~NP~~p~~laT~-------s~D~T~kIWD~R  353 (498)
T KOG4328|consen  329 ALNPVCPWFLATA-------SLDQTAKIWDLR  353 (498)
T ss_pred             ecCCCCchheeec-------ccCcceeeeehh
Confidence            8899888888988       999999999986

>KOG2394|consensus

Probab=99.04  E-value=6.2e-10  Score=72.81  Aligned_cols=79  Identities=16%  Similarity=0.295  Sum_probs=61.2

Q ss_pred             eeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCcc
Q psy8803          20 TEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQ   99 (111)
Q Consensus        20 ~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   99 (111)
                      +..+.--++.|...+|+|||++||+.++|+.++|||..+.+...    +-...+....+|+|+|++.+| ++|       
T Consensus       283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg----~mkSYFGGLLCvcWSPDGKyI-vtG-------  350 (636)
T KOG2394|consen  283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG----VMKSYFGGLLCVCWSPDGKYI-VTG-------  350 (636)
T ss_pred             cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH----HHHhhccceEEEEEcCCccEE-Eec-------
Confidence            33333345688899999999999999999999999998766554    222334667788999999887 556       


Q ss_pred             ccCceEEEeec
Q psy8803         100 STSGEIAVFSL  110 (111)
Q Consensus       100 ~~~~~i~iw~~  110 (111)
                      +.|.-|.||.+
T Consensus       351 GEDDLVtVwSf  361 (636)
T KOG2394|consen  351 GEDDLVTVWSF  361 (636)
T ss_pred             CCcceEEEEEe
Confidence            78889999976

>KOG1446|consensus

Probab=99.04  E-value=4.5e-09  Score=64.64  Aligned_cols=98  Identities=15%  Similarity=0.131  Sum_probs=73.9

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeC--CCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSK--DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      +++.|.+++|||..+++.+..+..+...+-.++|-+....+..++.  |.+|+..++.+.+.+.+-   ..+. ..++.+
T Consensus        31 tss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF---~GH~-~~V~sL  106 (311)
T KOG1446|consen   31 TSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF---PGHK-KRVNSL  106 (311)
T ss_pred             EecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEc---CCCC-ceEEEE
Confidence            5678889999999999999998877778888899776655555544  889999999988877621   1111 344566


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.+|-+..+ .++       +.|++|++||+|
T Consensus       107 ~~sP~~d~F-lS~-------S~D~tvrLWDlR  130 (311)
T KOG1446|consen  107 SVSPKDDTF-LSS-------SLDKTVRLWDLR  130 (311)
T ss_pred             EecCCCCeE-Eec-------ccCCeEEeeEec
Confidence            678877555 555       789999999987

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.03  E-value=1.5e-08  Score=64.01  Aligned_cols=98  Identities=23%  Similarity=0.310  Sum_probs=74.9

Q ss_pred             ccccCeeeecCCCC-ceeeeeeecccccEEEEEEcCCCcEEEEEeC-CCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           3 SWYEEYKRLDYHTP-IVETEVLTQHTHQVLHVSFSHNGRYFATCSK-DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         3 ~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +..|+.+++|+... ......+..|...|..+.|+|++..++.++. ++.+++|+.........   ... .-..+..++
T Consensus       130 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~v~~~~  205 (466)
T COG2319         130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST---LAG-HTDPVSSLA  205 (466)
T ss_pred             CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe---ecc-CCCceEEEE
Confidence            44589999999997 7888888999999999999999998888885 99999999987433331   111 113556777


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|.+..+++++       +.++.|++||.+
T Consensus       206 ~~~~~~~~~~~~-------~~d~~i~~wd~~  229 (466)
T COG2319         206 FSPDGGLLIASG-------SSDGTIRLWDLS  229 (466)
T ss_pred             EcCCcceEEEEe-------cCCCcEEEEECC
Confidence            887776555655       678999999753

>KOG2919|consensus

Probab=99.03  E-value=3e-09  Score=66.10  Aligned_cols=57  Identities=14%  Similarity=0.022  Sum_probs=45.0

Q ss_pred             CcccccCeeeecCCCCceeeeeeec--cccc---EEEEEEcCCCcEEEEEeCCCeEEEEec-CC
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQ--HTHQ---VLHVSFSHNGRYFATCSKDGYILVWTS-SY   58 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~--~~~~---v~~i~~s~~~~~l~s~~~d~~i~iw~~-~~   58 (111)
                      |+|+-|.-|+|||..+|+....+.+  |...   ..+++|+|||..|.+|- +.+|++||+ +.
T Consensus       127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~Rp  189 (406)
T KOG2919|consen  127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRP  189 (406)
T ss_pred             eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCC
Confidence            5678889999999999987766654  4333   45799999999887765 679999999 44

>KOG1272|consensus

Probab=99.02  E-value=3.3e-10  Score=72.92  Aligned_cols=99  Identities=4%  Similarity=0.063  Sum_probs=81.8

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++..|.++.-|+..|+.+..+..-.+.+..+.-.|-.-.+-.|..+|++.+|......++.   .+.|.. +++.+++
T Consensus       225 ~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv---KiLcH~-g~V~siA  300 (545)
T KOG1272|consen  225 VAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV---KILCHR-GPVSSIA  300 (545)
T ss_pred             eecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH---HHHhcC-CCcceEE
Confidence            456778999999999999998887777888888888888889999999999999988766554   344444 5777888


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.+.+.+++++|        .|+.++|||+|
T Consensus       301 v~~~G~YMaTtG--------~Dr~~kIWDlR  323 (545)
T KOG1272|consen  301 VDRGGRYMATTG--------LDRKVKIWDLR  323 (545)
T ss_pred             ECCCCcEEeecc--------cccceeEeeec
Confidence            999999987764        79999999987

>KOG2096|consensus

Probab=98.99  E-value=2.6e-09  Score=66.36  Aligned_cols=99  Identities=13%  Similarity=0.140  Sum_probs=73.2

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCc--eeeeecce---eeeecCce
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS--KVKYSHDM---KTFSWKYT   76 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~---~~~~~~~~   76 (111)
                      +.+-|..|.||+.+ |+.+..+...+..-...+.||+|+.++.++--.-+++|.+-..+  .++....+   ..+. +.+
T Consensus       204 sas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~-saV  281 (420)
T KOG2096|consen  204 SASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ-SAV  281 (420)
T ss_pred             EecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch-hhe
Confidence            45678999999999 98888887777777788999999999999877789999874221  11111111   1221 356


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ...+|+++...+++ .       +.||+++|||.
T Consensus       282 ~~~aFsn~S~r~vt-v-------SkDG~wriwdt  307 (420)
T KOG2096|consen  282 LAAAFSNSSTRAVT-V-------SKDGKWRIWDT  307 (420)
T ss_pred             eeeeeCCCcceeEE-E-------ecCCcEEEeec
Confidence            67899999888754 4       89999999996

>KOG0322|consensus

Probab=98.98  E-value=2.7e-09  Score=64.63  Aligned_cols=96  Identities=15%  Similarity=0.101  Sum_probs=65.7

Q ss_pred             ccccCeeeecCCCC--ceeee--eeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           3 SWYEEYKRLDYHTP--IVETE--VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         3 ~~~d~~i~iw~~~~--~~~~~--~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      ++-+.++-+|.+.-  +.+..  .++--.-.|..+..-||++.+++++-|++|++|..++...+.    +....-..+++
T Consensus       223 gga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA----VLkyHsagvn~  298 (323)
T KOG0322|consen  223 GGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA----VLKYHSAGVNA  298 (323)
T ss_pred             CCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh----hhhhhhcceeE
Confidence            34455666677652  22211  111123357788899999999999999999999999876554    11111145678


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++|+|+.+.+ +++       +.|..|.+|++
T Consensus       299 vAfspd~~lm-Aaa-------skD~rISLWkL  322 (323)
T KOG0322|consen  299 VAFSPDCELM-AAA-------SKDARISLWKL  322 (323)
T ss_pred             EEeCCCCchh-hhc-------cCCceEEeeec
Confidence            8899887665 555       89999999986

>KOG2048|consensus

Probab=98.96  E-value=1.1e-08  Score=68.46  Aligned_cols=97  Identities=21%  Similarity=0.263  Sum_probs=69.9

Q ss_pred             CcccccCeeeecCCCCceeee--eeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-e-------ecceee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETE--VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-Y-------SHDMKT   70 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~--~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~-------~~~~~~   70 (111)
                      ++++.||.+.+.++.+++..+  .|...++.|.+++|+|++..|++|+.|+.|++||...+...+ +       ...-.+
T Consensus       126 ~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~  205 (691)
T KOG2048|consen  126 AIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPT  205 (691)
T ss_pred             EeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCce
Confidence            356789988888888876443  334457999999999999999999999999999998865544 1       111233


Q ss_pred             eecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          71 FSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +.|+    |.|-.+ .. +++|       ...|+|.+||-
T Consensus       206 iVWS----v~~Lrd-~t-I~sg-------DS~G~V~FWd~  232 (691)
T KOG2048|consen  206 IVWS----VLFLRD-ST-IASG-------DSAGTVTFWDS  232 (691)
T ss_pred             EEEE----EEEeec-Cc-EEEe-------cCCceEEEEcc
Confidence            4453    555533 34 4666       77888999984

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.96  E-value=2.6e-08  Score=58.85  Aligned_cols=93  Identities=15%  Similarity=0.243  Sum_probs=59.1

Q ss_pred             CeeeecCCCC-ceeeeeeec-ccccEEEEEEcCCCcEEEEE--eCCCeEEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           7 EYKRLDYHTP-IVETEVLTQ-HTHQVLHVSFSHNGRYFATC--SKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         7 ~~i~iw~~~~-~~~~~~~~~-~~~~v~~i~~s~~~~~l~s~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      +...+|.++. +.....+.- ..+.|.+++|+|+++.|+..  ..+..+.+||++......       ..-.+.+.+.|+
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~-------~~~~~~n~i~ws  109 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFS-------FGTQPRNTISWS  109 (194)
T ss_pred             eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEe-------ecCCCceEEEEC
Confidence            3445555532 233333332 34579999999999876554  457799999997322221       111355678999


Q ss_pred             cCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          83 ESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |.+..++++|.+     ...|.|.+||++
T Consensus       110 P~G~~l~~~g~~-----n~~G~l~~wd~~  133 (194)
T PF08662_consen  110 PDGRFLVLAGFG-----NLNGDLEFWDVR  133 (194)
T ss_pred             CCCCEEEEEEcc-----CCCcEEEEEECC
Confidence            999998876511     224679999974

>KOG0280|consensus

Probab=98.95  E-value=1.4e-08  Score=62.43  Aligned_cols=100  Identities=16%  Similarity=0.141  Sum_probs=71.7

Q ss_pred             cccccCeeeecCCCCc--eeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCc-eeeeecceeeeecCcee
Q psy8803           2 KSWYEEYKRLDYHTPI--VETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPS-KVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~   77 (111)
                      +|..+|.+.+-+.+..  +....+++|+-+++...|+.. -+++.+|++|+.+..||++.+. ..-+...+..   ..+.
T Consensus       138 vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~---~GV~  214 (339)
T KOG0280|consen  138 VSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT---SGVV  214 (339)
T ss_pred             EEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeee---cceE
Confidence            3455666665455444  334478899999999999774 5789999999999999999432 2222222221   3455


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++.-+|+..+.+++|       +.|..|++||.|
T Consensus       215 SI~ss~~~~~~I~TG-------sYDe~i~~~DtR  241 (339)
T KOG0280|consen  215 SIYSSPPKPTYIATG-------SYDECIRVLDTR  241 (339)
T ss_pred             EEecCCCCCceEEEe-------ccccceeeeehh
Confidence            666688888888999       999999999976

>KOG4328|consensus

Probab=98.93  E-value=8.6e-09  Score=66.32  Aligned_cols=99  Identities=19%  Similarity=0.205  Sum_probs=66.3

Q ss_pred             CcccccCeeeecCCCCc---e-eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecC----CC---ceeeeeccee
Q psy8803           1 KKSWYEEYKRLDYHTPI---V-ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSS----YP---SKVKYSHDMK   69 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~---~-~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~----~~---~~~~~~~~~~   69 (111)
                      ||++-|++.+|||.+..   . ++.....|...|.+..|||.+-.|++.+.|..|+|||..    ..   ....|...  
T Consensus       339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~--  416 (498)
T KOG4328|consen  339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR--  416 (498)
T ss_pred             eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCc--
Confidence            68899999999999854   2 233345699999999999987669999999999999984    11   12233211  


Q ss_pred             eeecCceeeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          70 TFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        70 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      ...|-.....+|.|+..++ +.|       ...+.|-|+|
T Consensus       417 t~RwlT~fKA~W~P~~~li-~vg-------~~~r~IDv~~  448 (498)
T KOG4328|consen  417 TGRWLTPFKAAWDPDYNLI-VVG-------RYPRPIDVFD  448 (498)
T ss_pred             ccccccchhheeCCCccEE-EEe-------ccCcceeEEc
Confidence            1122222345677766554 555       4555566665

>KOG1524|consensus

Probab=98.93  E-value=1.4e-09  Score=71.37  Aligned_cols=100  Identities=13%  Similarity=0.217  Sum_probs=71.5

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC---ceeeeecceeeeecCc---
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP---SKVKYSHDMKTFSWKY---   75 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~---   75 (111)
                      .+++||...|.+-. ++......+|.+.+.+-.|+|||.-|+++++||.|++|.-..-   ...+...++++..|.|   
T Consensus        80 i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~  158 (737)
T KOG1524|consen   80 ICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSN  158 (737)
T ss_pred             EEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCC
Confidence            46788888886644 6666677899999999999999999999999999999975431   1112222444444443   


Q ss_pred             ------------------------------eeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          76 ------------------------------TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        76 ------------------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                                                    +.++.|++....+ ++|       +.|-..+|||-
T Consensus       159 ~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI-~sg-------GED~kfKvWD~  215 (737)
T KOG1524|consen  159 SIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNII-ASG-------GEDFRFKIWDA  215 (737)
T ss_pred             ceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccce-eec-------CCceeEEeecc
Confidence                                          2456777766554 666       78888999983

>KOG0650|consensus

Probab=98.92  E-value=1.9e-08  Score=66.88  Aligned_cols=64  Identities=20%  Similarity=0.224  Sum_probs=50.4

Q ss_pred             eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCC
Q psy8803          18 VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDT   86 (111)
Q Consensus        18 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   86 (111)
                      .+-..+.||++.|.+++.+|.|.+|++|+.||+++||.+.++.++.+..-.     +.+++|+|+|...
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-----~~I~~vaw~P~~~  454 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-----SEIRSVAWNPLSD  454 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-----ceeEEEEecCCCC
Confidence            344456799999999999999999999999999999999999887642211     3455677777443

>KOG0639|consensus

Probab=98.91  E-value=2.8e-09  Score=69.61  Aligned_cols=94  Identities=15%  Similarity=0.194  Sum_probs=67.7

Q ss_pred             cccccCeeeecCCCCceeeee--eecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCc
Q psy8803           2 KSWYEEYKRLDYHTPIVETEV--LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKY   75 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~--~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~   75 (111)
                      ++..-.++.|||+..-.+...  +....-.+++++.+||.++.+++..||.|.|||+.+...+.    |.....+     
T Consensus       482 vGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGasc-----  556 (705)
T KOG0639|consen  482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC-----  556 (705)
T ss_pred             eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCcee-----
Confidence            345567899999975543332  23333467788999999999999999999999999865444    4444444     


Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                         +..++++..|.+ |       +-|++|+-||+|
T Consensus       557 ---Idis~dGtklWT-G-------GlDntvRcWDlr  581 (705)
T KOG0639|consen  557 ---IDISKDGTKLWT-G-------GLDNTVRCWDLR  581 (705)
T ss_pred             ---EEecCCCceeec-C-------CCccceeehhhh
Confidence               445667877755 4       679999999986

>KOG0771|consensus

Probab=98.90  E-value=5.5e-09  Score=66.30  Aligned_cols=61  Identities=16%  Similarity=0.240  Sum_probs=53.7

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV   62 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~   62 (111)
                      |+..-||++|+|+..+...+.....|.+.|.++.|+|||+.|++-+.| ..+||+.+++...
T Consensus       160 atgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  160 ATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL  220 (398)
T ss_pred             eeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence            467789999999988777777778899999999999999999999998 9999999987433

>KOG1274|consensus

Probab=98.89  E-value=2.7e-08  Score=68.52  Aligned_cols=99  Identities=17%  Similarity=0.182  Sum_probs=76.9

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.+++|+.|.+.+++.--.+...+-++.+++++-+|.+++.|++|-.|++-++.+.....+   .+.+. .++.++.
T Consensus        70 ~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~---lrgh~-apVl~l~  145 (933)
T KOG1274|consen   70 LTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV---LRGHD-APVLQLS  145 (933)
T ss_pred             EEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee---ecccC-Cceeeee
Confidence            3678899999999988765555555667899999999999999999999999999976543332   12222 4666778


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|.+..++++        +.+|.|+|||++
T Consensus       146 ~~p~~~fLAvs--------s~dG~v~iw~~~  168 (933)
T KOG1274|consen  146 YDPKGNFLAVS--------SCDGKVQIWDLQ  168 (933)
T ss_pred             EcCCCCEEEEE--------ecCceEEEEEcc
Confidence            89999888765        569999999975

>KOG0290|consensus

Probab=98.89  E-value=2.1e-08  Score=61.68  Aligned_cols=93  Identities=14%  Similarity=0.185  Sum_probs=67.7

Q ss_pred             cccCeeeecCCCCce----eeeee-----ecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCce-------eeeec
Q psy8803           4 WYEEYKRLDYHTPIV----ETEVL-----TQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPSK-------VKYSH   66 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~----~~~~~-----~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~-------~~~~~   66 (111)
                      ..+..+|+|-+...+    +...+     ..+...+....|.. |-++|.+++-|.++.|||++.+..       ..|..
T Consensus       118 Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK  197 (364)
T KOG0290|consen  118 TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK  197 (364)
T ss_pred             cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc
Confidence            345689999987431    11112     23567888889977 578999999999999999987522       22444


Q ss_pred             ceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          67 DMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        67 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++        ..++|...+..++++.       +.||.+|++|||
T Consensus       198 EV--------~DIaf~~~s~~~FASv-------gaDGSvRmFDLR  227 (364)
T KOG0290|consen  198 EV--------YDIAFLKGSRDVFASV-------GADGSVRMFDLR  227 (364)
T ss_pred             ce--------eEEEeccCccceEEEe-------cCCCcEEEEEec
Confidence            44        4566677777888887       889999999997

>KOG0307|consensus

Probab=98.88  E-value=3.1e-09  Score=74.20  Aligned_cols=94  Identities=18%  Similarity=0.255  Sum_probs=74.7

Q ss_pred             CeeeecCCCCc-eeeeeeecccccEEEEEEcCCC-cEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           7 EYKRLDYHTPI-VETEVLTQHTHQVLHVSFSHNG-RYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         7 ~~i~iw~~~~~-~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      -.|++||++.- .++..+++|+..|.++.|++.+ +++++++.|+++.+|+.++++.+.....  ..  ..+..|.|.|.
T Consensus       232 PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~--nW~fdv~w~pr  307 (1049)
T KOG0307|consen  232 PVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QG--NWCFDVQWCPR  307 (1049)
T ss_pred             ceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CC--cceeeeeecCC
Confidence            45999999853 5777788999999999999965 8999999999999999999887763211  11  23456788898


Q ss_pred             CCEEEEeccccCCccccCceEEEeecC
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ...++++.       +.+|.|.|+.++
T Consensus       308 ~P~~~A~a-------sfdgkI~I~sl~  327 (1049)
T KOG0307|consen  308 NPSVMAAA-------SFDGKISIYSLQ  327 (1049)
T ss_pred             Ccchhhhh-------eeccceeeeeee
Confidence            88777776       899999999763

>KOG0644|consensus

Probab=98.86  E-value=8e-10  Score=75.57  Aligned_cols=90  Identities=16%  Similarity=0.162  Sum_probs=74.8

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCcee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYTQ   77 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~~   77 (111)
                      +++.|-.++||...+..++....||.+.+..++.+....++++++.|..|++|-+..+..+.    |.+        .++
T Consensus       207 tgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg--------avt  278 (1113)
T KOG0644|consen  207 TGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTG--------AVT  278 (1113)
T ss_pred             ecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcccc--------cee
Confidence            57788999999999999999999999999999999989999999999999999998865443    443        445


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .++|+|-.     +.       +.|++++|||.|
T Consensus       279 aiafsP~~-----ss-------s~dgt~~~wd~r  300 (1113)
T KOG0644|consen  279 AIAFSPRA-----SS-------SDDGTCRIWDAR  300 (1113)
T ss_pred             eeccCccc-----cC-------CCCCceEecccc
Confidence            56677754     33       779999999965

>KOG2055|consensus

Probab=98.85  E-value=5.2e-08  Score=62.97  Aligned_cols=55  Identities=18%  Similarity=0.094  Sum_probs=44.5

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEE--EEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVL--HVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~--~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      ++.+|-|.+||+++..+++++.. ++.|.  .++.++++++||+|+..|.+.|||..+
T Consensus       362 ~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  362 SGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             EcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence            56688999999999998888863 33333  456678999999999999999999653

>KOG1188|consensus

Probab=98.85  E-value=1.6e-08  Score=63.12  Aligned_cols=92  Identities=11%  Similarity=0.127  Sum_probs=65.4

Q ss_pred             ccCeeeecCCCCcee-eeee-ecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCcee-------eeecceeeeecC
Q psy8803           5 YEEYKRLDYHTPIVE-TEVL-TQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKV-------KYSHDMKTFSWK   74 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~-~~~~-~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~-------~~~~~~~~~~~~   74 (111)
                      .|-.+.+||++..+. +..+ +.|..-|.++.|+|. -++|++|+.||.+.+||++.....       .+..+|.     
T Consensus       141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~-----  215 (376)
T KOG1188|consen  141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIH-----  215 (376)
T ss_pred             CceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceee-----
Confidence            467899999997755 5544 579999999999995 689999999999999999764221       1222333     


Q ss_pred             ceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                         .+.|..++..-+.+-       +......+|+++
T Consensus       216 ---~igw~~~~ykrI~cl-------TH~Etf~~~ele  242 (376)
T KOG1188|consen  216 ---LIGWLSKKYKRIMCL-------THMETFAIYELE  242 (376)
T ss_pred             ---eeeeecCCcceEEEE-------EccCceeEEEcc
Confidence               455566663334444       556678888864

>KOG2055|consensus

Probab=98.84  E-value=4.7e-08  Score=63.17  Aligned_cols=94  Identities=14%  Similarity=0.116  Sum_probs=74.5

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeee---ecceeeeecCceee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKY---SHDMKTFSWKYTQY   78 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~   78 (111)
                      ..+..|+|.+.-..+++.+..++ ..+.|..++|+.|+..|+.++.+|.+.+||++...+.+.   .+.+      ..++
T Consensus       320 ~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v------~gts  392 (514)
T KOG2055|consen  320 IAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV------HGTS  392 (514)
T ss_pred             EcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc------ceee
Confidence            34567889998888888888887 678999999999999988888899999999998766552   2222      2345


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++.++++.+ +++|       +..|.|.|||.
T Consensus       393 ~~~S~ng~y-lA~G-------S~~GiVNIYd~  416 (514)
T KOG2055|consen  393 LCISLNGSY-LATG-------SDSGIVNIYDG  416 (514)
T ss_pred             eeecCCCce-EEec-------cCcceEEEecc
Confidence            677777775 5777       89999999985

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.83  E-value=3.1e-07  Score=59.28  Aligned_cols=95  Identities=14%  Similarity=0.097  Sum_probs=69.3

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..++.+.+.|..+.+.+..+......-..+.|+||++++..++.|+.+.++|+.+.+....   +...  .....+++++
T Consensus        13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~---i~~G--~~~~~i~~s~   87 (369)
T PF02239_consen   13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVAT---IKVG--GNPRGIAVSP   87 (369)
T ss_dssp             GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEE---EE-S--SEEEEEEE--
T ss_pred             cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEE---EecC--CCcceEEEcC
Confidence            4678999999999988888875433334567999999988889999999999999886652   3221  2345789999


Q ss_pred             CCCEEEEeccccCCccccCceEEEeec
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++.+++++.       -..+.+.|+|.
T Consensus        88 DG~~~~v~n-------~~~~~v~v~D~  107 (369)
T PF02239_consen   88 DGKYVYVAN-------YEPGTVSVIDA  107 (369)
T ss_dssp             TTTEEEEEE-------EETTEEEEEET
T ss_pred             CCCEEEEEe-------cCCCceeEecc
Confidence            999998877       66788999885

...

>KOG2445|consensus

Probab=98.82  E-value=4e-08  Score=60.76  Aligned_cols=72  Identities=22%  Similarity=0.387  Sum_probs=59.2

Q ss_pred             ecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC----ce----eeeecceeeeecCceeeEEEccCCCEEEEecccc
Q psy8803          24 TQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP----SK----VKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHF   95 (111)
Q Consensus        24 ~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~----~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   95 (111)
                      .+|...|.++.|.+-|+-+++|+.|.+++|||.+..    .+    ..|.+.+..+.|.       +|.-..+++++   
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WA-------hPEfGqvvA~c---   79 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWA-------HPEFGQVVATC---   79 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEec-------CccccceEEEE---
Confidence            478899999999999999999999999999997542    11    1266677777775       67777888888   


Q ss_pred             CCccccCceEEEee
Q psy8803          96 GTPQSTSGEIAVFS  109 (111)
Q Consensus        96 ~~~~~~~~~i~iw~  109 (111)
                          +.|+++.||.
T Consensus        80 ----S~Drtv~iWE   89 (361)
T KOG2445|consen   80 ----SYDRTVSIWE   89 (361)
T ss_pred             ----ecCCceeeee
Confidence                9999999996

>KOG0650|consensus

Probab=98.81  E-value=1.3e-07  Score=63.01  Aligned_cols=53  Identities=8%  Similarity=0.002  Sum_probs=40.8

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCc--EEEEEeCCCeEEEEe
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR--YFATCSKDGYILVWT   55 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~--~l~s~~~d~~i~iw~   55 (111)
                      |+++.||+++||.+.++.++.++. ..+.|.+++|.|.+.  .|+.+- ..++.+-+
T Consensus       416 asGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivn  470 (733)
T KOG0650|consen  416 ASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIVN  470 (733)
T ss_pred             eecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEeC
Confidence            578999999999999999999887 677999999999754  344443 33355554

>KOG1408|consensus

Probab=98.81  E-value=6e-08  Score=66.00  Aligned_cols=52  Identities=23%  Similarity=0.359  Sum_probs=40.7

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe--CCCeEEEEecCCC
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS--KDGYILVWTSSYP   59 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--~d~~i~iw~~~~~   59 (111)
                      .|-++|.+....-+-+..|...+.+++|+++|+++++|-  ....+++|++...
T Consensus        59 vVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h  112 (1080)
T KOG1408|consen   59 VVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFH  112 (1080)
T ss_pred             EEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccc
Confidence            356677776555555556778999999999999999984  6778999999764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=1.3e-07  Score=62.05  Aligned_cols=92  Identities=11%  Similarity=0.153  Sum_probs=63.2

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCC---CeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKD---GYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      .+..+.+||..... ...+..+...+....|+|||+.|+..+.+   ..|.+||+.++...... ...    ......+|
T Consensus       182 ~~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-~~~----g~~~~~~w  255 (429)
T PRK01742        182 QPYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-SFR----GHNGAPAF  255 (429)
T ss_pred             ceEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-cCC----CccCceeE
Confidence            35789999987443 55667788889999999999988887643   46999999876433211 111    11225789


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEee
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      +|++..++.+.       +.++.+.||.
T Consensus       256 SPDG~~La~~~-------~~~g~~~Iy~  276 (429)
T PRK01742        256 SPDGSRLAFAS-------SKDGVLNIYV  276 (429)
T ss_pred             CCCCCEEEEEE-------ecCCcEEEEE
Confidence            99999887765       4455555553

>KOG2111|consensus

Probab=98.79  E-value=2.6e-08  Score=61.69  Aligned_cols=58  Identities=14%  Similarity=0.154  Sum_probs=50.8

Q ss_pred             CcccccCe-eeecCCCCceeeeeeec--ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           1 KKSWYEEY-KRLDYHTPIVETEVLTQ--HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         1 ~~~~~d~~-i~iw~~~~~~~~~~~~~--~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      ||++..|| |||||..+|..+..+..  ....|++|+|||+..+|+.+++.|+++||.++.
T Consensus       197 ATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  197 ATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            56677777 99999999998888862  356899999999999999999999999999976

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.77  E-value=2.9e-07  Score=58.20  Aligned_cols=95  Identities=27%  Similarity=0.363  Sum_probs=69.6

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCc-EEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR-YFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      .|+.+++|+...+..+..+.+|...+.++.|+|++. .+++++.|+.+++||.........  ...... ... ...|+|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~~~~-~~~-~~~~~~  251 (466)
T COG2319         176 LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHS-DSV-VSSFSP  251 (466)
T ss_pred             CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee--ecCCCC-cce-eEeECC
Confidence            499999999998888888888999999999999987 666668999999998775443331  011000 111 116888


Q ss_pred             CCCEEEEeccccCCccccCceEEEeecC
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .+..++ ++       +.++.+++|+++
T Consensus       252 ~~~~~~-~~-------~~d~~~~~~~~~  271 (466)
T COG2319         252 DGSLLA-SG-------SSDGTIRLWDLR  271 (466)
T ss_pred             CCCEEE-Ee-------cCCCcEEEeeec
Confidence            875544 55       789999999874

>KOG3914|consensus

Probab=98.75  E-value=6e-08  Score=61.49  Aligned_cols=89  Identities=18%  Similarity=0.140  Sum_probs=61.6

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC-----ceeeeecceeeeecCceeeE
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP-----SKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~v   79 (111)
                      ....+.+|.+..+.+. .+-||-+-+..+.|+||++.|+++..|..|++-.....     .+.+|..-|..+..      
T Consensus       130 D~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl------  202 (390)
T KOG3914|consen  130 DVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL------  202 (390)
T ss_pred             CceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeee------
Confidence            3344555555544333 33479999999999999999999999999998877653     23345444444432      


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                          .+++.+.++       ++|+++++||++
T Consensus       203 ----~~~~~LlS~-------sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  203 ----TDNYLLLSG-------SGDKTLRLWDIT  223 (390)
T ss_pred             ----ccCceeeec-------CCCCcEEEEecc
Confidence                233445666       889999999974

>KOG0974|consensus

Probab=98.75  E-value=1.1e-07  Score=66.21  Aligned_cols=90  Identities=16%  Similarity=0.120  Sum_probs=68.5

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-----eecceeeeecCcee
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-----YSHDMKTFSWKYTQ   77 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~   77 (111)
                      ++--+.+-+|+....+.-..+.+|.+.+..+.|+.||+++++.++|+++++|++.+.+...     |...+..       
T Consensus       151 gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~-------  223 (967)
T KOG0974|consen  151 GSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA-------  223 (967)
T ss_pred             ccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE-------
Confidence            4455678889887544444789999999999999999999999999999999998755433     5444443       


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                       +.|.|.  . +.++       +.|-+.++|+.
T Consensus       224 -~~~~~n--~-i~t~-------gedctcrvW~~  245 (967)
T KOG0974|consen  224 -CCFLPN--R-IITV-------GEDCTCRVWGV  245 (967)
T ss_pred             -EEeccc--e-eEEe-------ccceEEEEEec
Confidence             445555  4 4555       78999999953

>KOG1063|consensus

Probab=98.74  E-value=6.4e-08  Score=65.18  Aligned_cols=98  Identities=18%  Similarity=0.247  Sum_probs=69.1

Q ss_pred             ccccCeeeecCCCCce----eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC--ceeeeecceeeeec-Cc
Q psy8803           3 SWYEEYKRLDYHTPIV----ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP--SKVKYSHDMKTFSW-KY   75 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~----~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~-~~   75 (111)
                      -+-|.++.+|....+.    .....+.|+..|..+.|+|++.+|+|++.|+++++|.....  ..+.+   +.++.+ .+
T Consensus       590 vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~---~a~~~~~~a  666 (764)
T KOG1063|consen  590 VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR---FACLKFSLA  666 (764)
T ss_pred             eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh---hchhccCCc
Confidence            4668899999885431    23346789999999999999999999999999999998765  32222   111111 23


Q ss_pred             eeeEEEcc----CCCEEEEeccccCCccccCceEEEeec
Q psy8803          76 TQYSQFNE----SDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        76 ~~~v~~~~----~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++.+++.|    +...+++.|       -..|+|.+|..
T Consensus       667 VTAv~~~~~~~~e~~~~vavG-------le~GeI~l~~~  698 (764)
T KOG1063|consen  667 VTAVAYLPVDHNEKGDVVAVG-------LEKGEIVLWRR  698 (764)
T ss_pred             eeeEEeeccccccccceEEEE-------ecccEEEEEec
Confidence            44555554    334467777       78899999973

>KOG0974|consensus

Probab=98.73  E-value=3.6e-08  Score=68.52  Aligned_cols=95  Identities=16%  Similarity=0.088  Sum_probs=68.3

Q ss_pred             cccccCeeeecCCCCceeee-eeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETE-VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +-+.|.++|+|++.+.+... ..-+|+..+..+.|.|.  .++++++|.++++|+....+...+.....    ..+..++
T Consensus       192 s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g----~~iw~~~  265 (967)
T KOG0974|consen  192 SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSG----KGIWKIA  265 (967)
T ss_pred             EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhh----cceeEEE
Confidence            45789999999999887655 66789999999999988  99999999999999776543222111111    1111233


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .. .+..+++++       +.|+.+++|++
T Consensus       266 ~~-~~~~~~vT~-------g~Ds~lk~~~l  287 (967)
T KOG0974|consen  266 VP-IGVIIKVTG-------GNDSTLKLWDL  287 (967)
T ss_pred             Ec-CCceEEEee-------ccCcchhhhhh
Confidence            33 555667777       78899999986

>KOG2106|consensus

Probab=98.70  E-value=6.5e-07  Score=58.83  Aligned_cols=92  Identities=14%  Similarity=0.098  Sum_probs=70.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-eecceeeeecCceeeE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFSWKYTQYS   79 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~v   79 (111)
                      +|++-|+++++|+  ..+++-.. .-..++.|+.|+|.| .++.|...|...+.|.++...+. |..      ..+++.+
T Consensus       384 ~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d------~~~ls~v  453 (626)
T KOG2106|consen  384 LTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD------NEQLSVV  453 (626)
T ss_pred             eeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec------CCceEEE
Confidence            4678899999999  34443332 246788999999999 99999999999999998855443 211      2677889


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +|+|++..+++ |       +.|+.|.||.+
T Consensus       454 ~ysp~G~~lAv-g-------s~d~~iyiy~V  476 (626)
T KOG2106|consen  454 RYSPDGAFLAV-G-------SHDNHIYIYRV  476 (626)
T ss_pred             EEcCCCCEEEE-e-------cCCCeEEEEEE
Confidence            99999988755 4       88999999865

>KOG1524|consensus

Probab=98.67  E-value=4.4e-07  Score=60.14  Aligned_cols=55  Identities=15%  Similarity=0.206  Sum_probs=42.1

Q ss_pred             eeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee---eecceeeeecC
Q psy8803          20 TEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK---YSHDMKTFSWK   74 (111)
Q Consensus        20 ~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~~   74 (111)
                      +..+++|++.|.++.|++..++|++|++|.+.++||......+.   |..++..++|.
T Consensus       179 ~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~n  236 (737)
T KOG1524|consen  179 IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFN  236 (737)
T ss_pred             eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeec
Confidence            45567899999999999999999999999999999987643332   33344444443

>KOG1517|consensus

Probab=98.67  E-value=2.6e-07  Score=65.19  Aligned_cols=102  Identities=16%  Similarity=0.051  Sum_probs=68.9

Q ss_pred             ccccCeeeecCCCCceeeeeee-cccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceee-eecceeeeecCceeeE
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLT-QHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFSWKYTQYS   79 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~v   79 (111)
                      ++.-..|+|||....+.+..+. +....++.+.-+.. |+.|+.|..||.+++||.+....-. ....-...++.++..+
T Consensus      1183 tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1183 TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL 1262 (1387)
T ss_pred             cCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeE
Confidence            3445689999999777766664 44556666665443 7999999999999999998642211 0000011112335567


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .+.+.+..-+++|       +.+|.|.+||+|
T Consensus      1263 slq~~G~~elvSg-------s~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSG-------SQDGDIQLLDLR 1287 (1387)
T ss_pred             EeecCCCcceeee-------ccCCeEEEEecc
Confidence            7777665556788       899999999987

>KOG3881|consensus

Probab=98.63  E-value=4.3e-07  Score=57.73  Aligned_cols=98  Identities=7%  Similarity=0.030  Sum_probs=74.8

Q ss_pred             cccccCeeeecCCCCc-eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeee-ecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPI-VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKY-SHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~v   79 (111)
                      +..--+++++||...+ +++..|.-.+..++++...|+++.+.++..-+.+..||++......+ ...+.    ..+..+
T Consensus       221 t~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t----Gsirsi  296 (412)
T KOG3881|consen  221 TITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT----GSIRSI  296 (412)
T ss_pred             EEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc----CCcceE
Confidence            3345678999999865 67878877788999999999999999999999999999998876653 11111    234455


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      -.+|....+ +++       +-|+.+||+|++
T Consensus       297 h~hp~~~~l-as~-------GLDRyvRIhD~k  320 (412)
T KOG3881|consen  297 HCHPTHPVL-ASC-------GLDRYVRIHDIK  320 (412)
T ss_pred             EEcCCCceE-Eee-------ccceeEEEeecc
Confidence            566676665 455       689999999974

>KOG1963|consensus

Probab=98.61  E-value=5.7e-07  Score=61.81  Aligned_cols=96  Identities=14%  Similarity=0.143  Sum_probs=73.7

Q ss_pred             CcccccCeeeecCCCC--c--eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTP--I--VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~--~--~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~   76 (111)
                      |++-.||.|.+|.-..  +  .....|.-|...|.+++|+++|.+|.+||..+.+-+|.+.++....    .+.+. +++
T Consensus       221 Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf----LPRLg-s~I  295 (792)
T KOG1963|consen  221 AAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF----LPRLG-SPI  295 (792)
T ss_pred             EEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc----ccccC-Cee
Confidence            4567899999998754  2  3455666789999999999999999999999999999999876322    22222 677


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      ..+.++|++....++.        .|+.|++-.
T Consensus       296 ~~i~vS~ds~~~sl~~--------~DNqI~li~  320 (792)
T KOG1963|consen  296 LHIVVSPDSDLYSLVL--------EDNQIHLIK  320 (792)
T ss_pred             EEEEEcCCCCeEEEEe--------cCceEEEEe
Confidence            7888999888776654        488887754

>KOG1587|consensus

Probab=98.61  E-value=2e-07  Score=62.65  Aligned_cols=97  Identities=19%  Similarity=0.180  Sum_probs=69.4

Q ss_pred             ccccCeeeecCCC-CceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceee-eecceeeeecCceeeE
Q psy8803           3 SWYEEYKRLDYHT-PIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFSWKYTQYS   79 (111)
Q Consensus         3 ~~~d~~i~iw~~~-~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~v   79 (111)
                      +..|-+++||.-. ...++..+..+...|.+++|||- -..|+++..+|.+.+||+....... ....+-   -...+.+
T Consensus       416 s~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~---~~~l~~~  492 (555)
T KOG1587|consen  416 SVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC---SPALTRV  492 (555)
T ss_pred             eeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc---cccccee
Confidence            4459999999998 67788888888888999999996 4688889999999999997533221 111111   1233344


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .+++.+.. +++|       ...|.++++++
T Consensus       493 ~~s~~g~~-lavG-------d~~G~~~~~~l  515 (555)
T KOG1587|consen  493 RWSPNGKL-LAVG-------DANGTTHILKL  515 (555)
T ss_pred             ecCCCCcE-EEEe-------cCCCcEEEEEc
Confidence            55555655 5666       77888999987

>KOG2139|consensus

Probab=98.60  E-value=1.1e-06  Score=55.68  Aligned_cols=86  Identities=9%  Similarity=0.049  Sum_probs=61.1

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      |-.|.+|.|||..++..+.-...--+.+.-+.||||+.+|+++..|+..++|+.........  .+.  .-..+++-.|+
T Consensus       214 S~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er--w~l--gsgrvqtacWs  289 (445)
T KOG2139|consen  214 SFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER--WIL--GSGRVQTACWS  289 (445)
T ss_pred             ccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc--eec--cCCceeeeeec
Confidence            45678899999998865544333456788899999999999999999999996654322211  111  11356777888


Q ss_pred             cCCCEEEEec
Q psy8803          83 ESDTLLLVSG   92 (111)
Q Consensus        83 ~~~~~~~~~~   92 (111)
                      |.+..++.+.
T Consensus       290 pcGsfLLf~~  299 (445)
T KOG2139|consen  290 PCGSFLLFAC  299 (445)
T ss_pred             CCCCEEEEEE
Confidence            8888776654

>smart00320 WD40 WD40 repeats

Probab=98.59  E-value=4.7e-07  Score=38.29  Aligned_cols=39  Identities=38%  Similarity=0.606  Sum_probs=34.2

Q ss_pred             ceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEe
Q psy8803          17 IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWT   55 (111)
Q Consensus        17 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~   55 (111)
                      +++...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2106|consensus

Probab=98.58  E-value=3e-06  Score=55.83  Aligned_cols=93  Identities=18%  Similarity=0.119  Sum_probs=65.9

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC-CceeeeecceeeeecCceeeEEEcc
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY-PSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      -.|.--+.|.++... ..+...+..+.++.|+|+|.+||.|+.|..|++|.+.. +.....   +.....+|++.+.|++
T Consensus       426 ~~G~w~V~d~e~~~l-v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r---~~k~~gs~ithLDwS~  501 (626)
T KOG2106|consen  426 ATGRWFVLDTETQDL-VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR---VGKCSGSPITHLDWSS  501 (626)
T ss_pred             ccceEEEEeccccee-EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE---eeeecCceeEEeeecC
Confidence            345555666665333 33333478999999999999999999999999999865 333332   2222227888889998


Q ss_pred             CCCEEEEeccccCCccccCceEEEee
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      +..++ .+.       +.|-.|.+|.
T Consensus       502 Ds~~~-~~~-------S~d~eiLyW~  519 (626)
T KOG2106|consen  502 DSQFL-VSN-------SGDYEILYWK  519 (626)
T ss_pred             CCceE-Eec-------cCceEEEEEc
Confidence            88776 444       7788899984

>KOG1523|consensus

Probab=98.57  E-value=1.1e-06  Score=54.88  Aligned_cols=99  Identities=17%  Similarity=0.193  Sum_probs=67.3

Q ss_pred             ccccCeeeecCCCCc---eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           3 SWYEEYKRLDYHTPI---VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      +-...-|.||.....   +..+.++.|+..|.+++|+|..+-|++++.|+.-++|....+..-...-.+..+. ...++|
T Consensus        28 ~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiN-rAAt~V  106 (361)
T KOG1523|consen   28 SPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRIN-RAATCV  106 (361)
T ss_pred             ccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEec-cceeeE
Confidence            334445666665533   5778888999999999999999999999999999999984321111000111111 234567


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .|+|.++.+ +.|       +..+.|.||-+
T Consensus       107 ~WsP~enkF-AVg-------Sgar~isVcy~  129 (361)
T KOG1523|consen  107 KWSPKENKF-AVG-------SGARLISVCYY  129 (361)
T ss_pred             eecCcCceE-Eec-------cCccEEEEEEE
Confidence            778888776 445       77888888854

>KOG4547|consensus

Probab=98.57  E-value=1.2e-06  Score=58.01  Aligned_cols=96  Identities=15%  Similarity=0.052  Sum_probs=72.1

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +..-|..+..|+...+..+..+...+..+..++.+||+..+++++  +.|++||+++.+.+.+.   ..+ -+++++++|
T Consensus       119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~f---tgh-~s~v~t~~f  192 (541)
T KOG4547|consen  119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITF---TGH-GSPVRTLSF  192 (541)
T ss_pred             ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEe---cCC-CcceEEEEE
Confidence            345688999999999999999998999999999999999999998  68999999998776521   111 134445555


Q ss_pred             ccC-----CCEEEEeccccCCccccCceEEEeec
Q psy8803          82 NES-----DTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        82 ~~~-----~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      --.     +.+++.+.       ..++-|.+|-+
T Consensus       193 ~~~~~g~~G~~vLssa-------~~~r~i~~w~v  219 (541)
T KOG4547|consen  193 TTLIDGIIGKYVLSSA-------AAERGITVWVV  219 (541)
T ss_pred             EEeccccccceeeecc-------ccccceeEEEE
Confidence            544     56776666       55666777754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.57  E-value=2.1e-06  Score=54.45  Aligned_cols=98  Identities=10%  Similarity=-0.042  Sum_probs=65.6

Q ss_pred             cccccCeeeecCCCC-ce--eeeeeecccccEEEEEEcCCCcEEEEE-eCCCeEEEEecCC-CceeeeecceeeeecCce
Q psy8803           2 KSWYEEYKRLDYHTP-IV--ETEVLTQHTHQVLHVSFSHNGRYFATC-SKDGYILVWTSSY-PSKVKYSHDMKTFSWKYT   76 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~-~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~   76 (111)
                      +...|++|.+|++.+ ++  .+..+. +.+....+.++|+++.|..+ ..++.+.+|++.. +.... ...+..  ....
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~-~~~~~~--~~~p   82 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTF-AAESPL--PGSP   82 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEE-eeeecC--CCCc
Confidence            346789999999964 32  344443 34567788999999987665 4578899999863 22211 111111  1234


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ..++|+|++..++++.       -.++.|.+|++
T Consensus        83 ~~i~~~~~g~~l~v~~-------~~~~~v~v~~~  109 (330)
T PRK11028         83 THISTDHQGRFLFSAS-------YNANCVSVSPL  109 (330)
T ss_pred             eEEEECCCCCEEEEEE-------cCCCeEEEEEE
Confidence            5789999999888876       45778899876

>KOG4227|consensus

Probab=98.56  E-value=8.6e-07  Score=56.91  Aligned_cols=101  Identities=11%  Similarity=0.035  Sum_probs=74.8

Q ss_pred             cccccCeeeecCCCCceeeeeeec--ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCc-eeeeecceeeeecCceee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQ--HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS-KVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~--~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~   78 (111)
                      ++..+++|-+.|+.+.+.+..+..  ..+.|+.+..+|..+.|++.+.++.+.+||.+... ....  -...-..+...+
T Consensus       122 SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~--~~~AN~~~~F~t  199 (609)
T KOG4227|consen  122 SGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL--VLPANSGKNFYT  199 (609)
T ss_pred             cCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce--eeecCCCcccee
Confidence            456789999999998888776641  23589999999999999999999999999998643 1110  011111234567


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.|+|....++.+.       +..+-+.+||.|
T Consensus       200 ~~F~P~~P~Li~~~-------~~~~G~~~~D~R  225 (609)
T KOG4227|consen  200 AEFHPETPALILVN-------SETGGPNVFDRR  225 (609)
T ss_pred             eeecCCCceeEEec-------cccCCCCceeec
Confidence            89999888888877       566668899865

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.54  E-value=2.4e-06  Score=56.90  Aligned_cols=72  Identities=17%  Similarity=0.280  Sum_probs=56.2

Q ss_pred             cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCce
Q psy8803          25 QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGE  104 (111)
Q Consensus        25 ~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  104 (111)
                      ...+.+.+++++|+...++.|+.||.+.+||..........     .. ..++.++|+|++..+++ |       +..|+
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k-----a~-~~P~~iaWHp~gai~~V-~-------s~qGe  322 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK-----AE-FIPTLIAWHPDGAIFVV-G-------SEQGE  322 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee-----ec-ccceEEEEcCCCcEEEE-E-------cCCce
Confidence            36789999999999999999999999999999765433211     11 23557889999887765 3       67899


Q ss_pred             EEEeec
Q psy8803         105 IAVFSL  110 (111)
Q Consensus       105 i~iw~~  110 (111)
                      +.+||+
T Consensus       323 lQ~FD~  328 (545)
T PF11768_consen  323 LQCFDM  328 (545)
T ss_pred             EEEEEe
Confidence            999996

>KOG1587|consensus

Probab=98.52  E-value=2.3e-06  Score=57.70  Aligned_cols=98  Identities=12%  Similarity=0.082  Sum_probs=62.7

Q ss_pred             ccCeeeecCCCCc-eeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCcee--eeecceeeeecCceeeEE
Q psy8803           5 YEEYKRLDYHTPI-VETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKV--KYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         5 ~d~~i~iw~~~~~-~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~v~   80 (111)
                      .++.+.+|++... .+...+. ....|.+++|+|. .++++.|..+|.+.+||++.....  ...+......-.++..+.
T Consensus       220 ~~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv  298 (555)
T KOG1587|consen  220 PDGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV  298 (555)
T ss_pred             CCceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence            3457899999855 5555555 5789999999994 788999999999999999875431  100000000012333343


Q ss_pred             EccCC--CEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESD--TLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~--~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |....  ..++. +       +.||.|..|+++
T Consensus       299 W~~~~~~~~f~s-~-------ssDG~i~~W~~~  323 (555)
T KOG1587|consen  299 WLQNEHNTEFFS-L-------SSDGSICSWDTD  323 (555)
T ss_pred             EeccCCCCceEE-E-------ecCCcEeeeecc
Confidence            43322  23444 3       669999999874

>KOG1240|consensus

Probab=98.51  E-value=4.9e-06  Score=59.74  Aligned_cols=58  Identities=17%  Similarity=0.143  Sum_probs=45.7

Q ss_pred             CcccccCeeeecCCCCc-------eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           1 KKSWYEEYKRLDYHTPI-------VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      ++++.||+|++|+.+.-       +...++..-.+.+.++.+.+.++.+|.++.||.+.+.++.-
T Consensus      1065 vsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1065 VSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred             EEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccc
Confidence            47899999999999742       12222233467899999999999999999999999998764

>KOG1009|consensus

Probab=98.47  E-value=4.4e-07  Score=57.96  Aligned_cols=85  Identities=13%  Similarity=0.123  Sum_probs=61.3

Q ss_pred             CcccccCeeeecCCC--------C-----c---eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeee
Q psy8803           1 KKSWYEEYKRLDYHT--------P-----I---VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKY   64 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~--------~-----~---~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~   64 (111)
                      |++..+|.+.+|-..        +     .   .....+.+|...++.++|+||++.+++++.|..+++||+..+.....
T Consensus        81 ASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~  160 (434)
T KOG1009|consen   81 ASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAI  160 (434)
T ss_pred             eecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEee
Confidence            567788899999776        2     1   23445568999999999999999999999999999999998776541


Q ss_pred             ecceeeeecCceeeEEEccCCCEEE
Q psy8803          65 SHDMKTFSWKYTQYSQFNESDTLLL   89 (111)
Q Consensus        65 ~~~~~~~~~~~~~~v~~~~~~~~~~   89 (111)
                          ..-.-..+|.+++.|...+++
T Consensus       161 ----~~dh~~yvqgvawDpl~qyv~  181 (434)
T KOG1009|consen  161 ----LDDHEHYVQGVAWDPLNQYVA  181 (434)
T ss_pred             ----ccccccccceeecchhhhhhh
Confidence                111113455566666555543

>KOG4227|consensus

Probab=98.47  E-value=3.2e-06  Score=54.38  Aligned_cols=98  Identities=9%  Similarity=0.113  Sum_probs=72.4

Q ss_pred             CcccccCeeeecCCCCc------eeeeeee-cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee---eecceee
Q psy8803           1 KKSWYEEYKRLDYHTPI------VETEVLT-QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK---YSHDMKT   70 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~------~~~~~~~-~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~   70 (111)
                      |++..|-++++|.....      +++.... .|.+.|.|+.|....+.+.+|+.++++..-|+++.+.+.   +...-  
T Consensus        72 ~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~--  149 (609)
T KOG4227|consen   72 ASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNR--  149 (609)
T ss_pred             eecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcc--
Confidence            46788999999998642      3444333 466899999999989999999999999999999876554   21100  


Q ss_pred             eecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          71 FSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                         ..+..+..+|.++.++++        +.++.|.|||.|
T Consensus       150 ---~~VY~m~~~P~DN~~~~~--------t~~~~V~~~D~R  179 (609)
T KOG4227|consen  150 ---GDVYHMDQHPTDNTLIVV--------TRAKLVSFIDNR  179 (609)
T ss_pred             ---cceeecccCCCCceEEEE--------ecCceEEEEecc
Confidence               234456667877776654        578889999975

>KOG1064|consensus

Probab=98.46  E-value=2.7e-07  Score=68.06  Aligned_cols=85  Identities=13%  Similarity=0.113  Sum_probs=65.1

Q ss_pred             ccccCeeeecCCCC--ceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           3 SWYEEYKRLDYHTP--IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         3 ~~~d~~i~iw~~~~--~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      |..++-+.+||..-  ...+.. +.|.+.+.++++.|..++|++||.+|.+++||++..+..++-+.     +       
T Consensus      2311 s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----~------- 2377 (2439)
T KOG1064|consen 2311 SSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----L------- 2377 (2439)
T ss_pred             CCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----h-------
Confidence            45677899999852  222222 78999999999999999999999999999999998665553222     1       


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                         +....+++|       +..|.|+||++
T Consensus      2378 ---~~~~~f~~~-------ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2378 ---DTREYFVTG-------SSEGNIKIWRL 2397 (2439)
T ss_pred             ---hhhheeecc-------CcccceEEEEc
Confidence               233456777       88899999986

>KOG0644|consensus

Probab=98.45  E-value=6.3e-08  Score=66.71  Aligned_cols=77  Identities=23%  Similarity=0.389  Sum_probs=61.1

Q ss_pred             eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee----eeecceeeeecCceeeEEEccCCCEEEEeccc
Q psy8803          19 ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV----KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVH   94 (111)
Q Consensus        19 ~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   94 (111)
                      .+..+.+|...|+|..|+..|+++++++.|..++||.+++..+.    +|...+..++.+         ..+.+++++  
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs---------~~n~~iaaa--  250 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVS---------SNNTMIAAA--  250 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccc---------hhhhhhhhc--
Confidence            34556689999999999999999999999999999999886544    366677666543         455666666  


Q ss_pred             cCCccccCceEEEeecC
Q psy8803          95 FGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        95 ~~~~~~~~~~i~iw~~~  111 (111)
                           +.|..|++|.++
T Consensus       251 -----S~D~vIrvWrl~  262 (1113)
T KOG0644|consen  251 -----SNDKVIRVWRLP  262 (1113)
T ss_pred             -----ccCceEEEEecC
Confidence                 889999999874

>KOG1517|consensus

Probab=98.45  E-value=2.3e-06  Score=60.69  Aligned_cols=102  Identities=19%  Similarity=0.246  Sum_probs=69.0

Q ss_pred             CcccccCeeeecCCCCc---eeeeeeeccccc--EEEEEEcCCCc-EEEEEeCCCeEEEEecCCCceeeeecceeeeecC
Q psy8803           1 KKSWYEEYKRLDYHTPI---VETEVLTQHTHQ--VLHVSFSHNGR-YFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWK   74 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~--v~~i~~s~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~   74 (111)
                      +.+.-||.+++||.+.-   ..+...+.|+..  |..+.+.+.|- .|++|+.+|.|++||++.........-+..-..+
T Consensus      1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred             EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence            35678999999999743   467777889888  99999988654 5999999999999999974222111111100001


Q ss_pred             -ceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          75 -YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        75 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                       ..+++.-++.... +++|       +. +.|+||++.
T Consensus      1305 s~lTal~VH~hapi-iAsG-------s~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPI-IASG-------SA-QLIKIYSLS 1333 (1387)
T ss_pred             ccceeeeeccCCCe-eeec-------Cc-ceEEEEecC
Confidence             2345555655544 5666       54 889999863

>KOG2110|consensus

Probab=98.45  E-value=5.5e-06  Score=52.55  Aligned_cols=93  Identities=15%  Similarity=0.155  Sum_probs=65.5

Q ss_pred             CeeeecCCCCceeeeeeec---ccccEEEEEEcCCCcEEEEEe--CCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           7 EYKRLDYHTPIVETEVLTQ---HTHQVLHVSFSHNGRYFATCS--KDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +.|.|||++.-++++++..   +...+.++++++.+.+++-.+  ..|.+.+||..+.+...   .+.++. +++.+++|
T Consensus       106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~---~I~aH~-~~lAalaf  181 (391)
T KOG2110|consen  106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN---TINAHK-GPLAALAF  181 (391)
T ss_pred             ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee---EEEecC-CceeEEEE
Confidence            4589999998888888763   344566666666677877654  36789999998765544   244443 56778899


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++++..++++.       .....|||+.+
T Consensus       182 s~~G~llATAS-------eKGTVIRVf~v  203 (391)
T KOG2110|consen  182 SPDGTLLATAS-------EKGTVIRVFSV  203 (391)
T ss_pred             CCCCCEEEEec-------cCceEEEEEEc
Confidence            99998876544       45556788764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.43  E-value=9.9e-06  Score=53.40  Aligned_cols=80  Identities=15%  Similarity=0.072  Sum_probs=55.9

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeC---CCeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSK---DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..|.++|.. +.....+..+...+....|+|||+.|+..+.   +..|.+||+.++.....    .... ......+|+|
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l----~~~~-g~~~~~~~SP  255 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV----GNFP-GMTFAPRFSP  255 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe----ecCC-CcccCcEECC
Confidence            367888875 5445567778889999999999998877653   46899999987654331    1110 1233567899


Q ss_pred             CCCEEEEec
Q psy8803          84 SDTLLLVSG   92 (111)
Q Consensus        84 ~~~~~~~~~   92 (111)
                      ++..++.+.
T Consensus       256 DG~~la~~~  264 (435)
T PRK05137        256 DGRKVVMSL  264 (435)
T ss_pred             CCCEEEEEE
Confidence            999887665

>KOG0771|consensus

Probab=98.42  E-value=1.3e-06  Score=55.90  Aligned_cols=64  Identities=23%  Similarity=0.358  Sum_probs=48.6

Q ss_pred             EEEEEcCCCcEEEEEeCCCeEEEEecCCCcee----eeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEE
Q psy8803          31 LHVSFSHNGRYFATCSKDGYILVWTSSYPSKV----KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIA  106 (111)
Q Consensus        31 ~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~  106 (111)
                      ..++|+++|..+++++.||++++|+.......    .|..+|.        .+.|+|++..++..+        .+ ..+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~--------DL~FS~dgk~lasig--------~d-~~~  210 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK--------DLDFSPDGKFLASIG--------AD-SAR  210 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc--------cceeCCCCcEEEEec--------CC-ceE
Confidence            78899999999999999999999996653322    2444554        455788888877765        34 799


Q ss_pred             EeecC
Q psy8803         107 VFSLQ  111 (111)
Q Consensus       107 iw~~~  111 (111)
                      ||+++
T Consensus       211 VW~~~  215 (398)
T KOG0771|consen  211 VWSVN  215 (398)
T ss_pred             EEEec
Confidence            99864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.42  E-value=6.2e-06  Score=52.31  Aligned_cols=99  Identities=9%  Similarity=0.074  Sum_probs=62.7

Q ss_pred             cccCeeeecCCCC-c---eeeeeeecccccEEEEEEcCCCcEEEEE-eCCCeEEEEecCCCceee-ee-cceeeeecCce
Q psy8803           4 WYEEYKRLDYHTP-I---VETEVLTQHTHQVLHVSFSHNGRYFATC-SKDGYILVWTSSYPSKVK-YS-HDMKTFSWKYT   76 (111)
Q Consensus         4 ~~d~~i~iw~~~~-~---~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~d~~i~iw~~~~~~~~~-~~-~~~~~~~~~~~   76 (111)
                      ..++.+.+|++.+ +   +.+..+. +......+.++|+++.++.+ ..++.|.+||+.....+. .. ..+........
T Consensus        99 ~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p  177 (330)
T PRK11028         99 YNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP  177 (330)
T ss_pred             cCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC
Confidence            4578899998863 2   2222222 22345678899998877554 456899999997632221 10 01111111345


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ..++|+|++.+++++.       ..++.|.+|++
T Consensus       178 ~~~~~~pdg~~lyv~~-------~~~~~v~v~~~  204 (330)
T PRK11028        178 RHMVFHPNQQYAYCVN-------ELNSSVDVWQL  204 (330)
T ss_pred             ceEEECCCCCEEEEEe-------cCCCEEEEEEE
Confidence            6789999999988865       55888999986

>KOG4497|consensus

Probab=98.39  E-value=4.8e-06  Score=52.48  Aligned_cols=84  Identities=13%  Similarity=0.067  Sum_probs=60.5

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe-CCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS-KDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      ...|+.|++|++.+-+-..++..-...+..++|||||+.|+.-+ -+-+|.+|.+.+....... ...    ..++.++|
T Consensus        67 ~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK----~~~kg~~f  141 (447)
T KOG4497|consen   67 AYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPK----TNVKGYAF  141 (447)
T ss_pred             eeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccc----cCceeEEE
Confidence            34688999999998777667766677889999999997666554 5778999999876544311 111    22357889


Q ss_pred             ccCCCEEEEe
Q psy8803          82 NESDTLLLVS   91 (111)
Q Consensus        82 ~~~~~~~~~~   91 (111)
                      +|++...+.+
T Consensus       142 ~~dg~f~ai~  151 (447)
T KOG4497|consen  142 HPDGQFCAIL  151 (447)
T ss_pred             CCCCceeeee
Confidence            9998876554

>KOG2139|consensus

Probab=98.38  E-value=7.2e-06  Score=52.18  Aligned_cols=101  Identities=14%  Similarity=0.159  Sum_probs=68.7

Q ss_pred             CcccccCeeeecCCCCceeeeeee-cccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCC----ce--ee--eecceee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLT-QHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYP----SK--VK--YSHDMKT   70 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~----~~--~~--~~~~~~~   70 (111)
                      |+...|..|++||-....+ ..++ ..+..|.|++|-|. +..|+.++. .-|.+|.....    ..  +.  +...+..
T Consensus       114 ava~nddvVriy~ksst~p-t~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~  191 (445)
T KOG2139|consen  114 AVATNDDVVRIYDKSSTCP-TKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQ  191 (445)
T ss_pred             hhhccCcEEEEeccCCCCC-ceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhhee
Confidence            4567899999999887433 3333 45789999999996 456777775 46789987532    11  11  1111211


Q ss_pred             -eecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          71 -FSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        71 -~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                       -...+++.+++++++..++.+.       -.+..|.|||.
T Consensus       192 ~pgh~pVtsmqwn~dgt~l~tAS-------~gsssi~iWdp  225 (445)
T KOG2139|consen  192 DPGHNPVTSMQWNEDGTILVTAS-------FGSSSIMIWDP  225 (445)
T ss_pred             CCCCceeeEEEEcCCCCEEeecc-------cCcceEEEEcC
Confidence             1114788899999998887766       77888999986

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.35  E-value=9.3e-06  Score=53.51  Aligned_cols=93  Identities=14%  Similarity=0.123  Sum_probs=61.2

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeC---CCeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSK---DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..|.+||.. +.....+..+...+....|+||++.|+..+.   ...+.+||+..+...... ...    ......+|+|
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~~~----g~~~~~~~Sp  257 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA-SFR----GINGAPSFSP  257 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec-cCC----CCccCceECC
Confidence            468899986 4444556667778999999999998887763   346999999876543311 111    1122568999


Q ss_pred             CCCEEEEeccccCCccccCceEEEeec
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++..++.+...     .....|.+||+
T Consensus       258 DG~~l~~~~s~-----~g~~~Iy~~d~  279 (433)
T PRK04922        258 DGRRLALTLSR-----DGNPEIYVMDL  279 (433)
T ss_pred             CCCEEEEEEeC-----CCCceEEEEEC
Confidence            99988765411     11235888876

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.33  E-value=1.4e-05  Score=52.69  Aligned_cols=89  Identities=15%  Similarity=0.163  Sum_probs=55.6

Q ss_pred             CeeeecCCCCcee--eeeeecccccEEEEEEcCCCcEEEEEe-CCCeEEEE--ecCCCceeeeecceeeeecCceeeEEE
Q psy8803           7 EYKRLDYHTPIVE--TEVLTQHTHQVLHVSFSHNGRYFATCS-KDGYILVW--TSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         7 ~~i~iw~~~~~~~--~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      ..|.+||+.+++.  +..+.+|   .....|+|||+.|+.++ .++.+.||  |+.......    +... .......+|
T Consensus       228 ~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~----lt~~-~~~~~~~~w  299 (429)
T PRK01742        228 SQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ----LTSG-AGNNTEPSW  299 (429)
T ss_pred             cEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe----eccC-CCCcCCEEE
Confidence            4699999987643  3334443   34689999999887764 67765555  555443322    1111 122345789


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +|++..++.+.       ..++...||++
T Consensus       300 SpDG~~i~f~s-------~~~g~~~I~~~  321 (429)
T PRK01742        300 SPDGQSILFTS-------DRSGSPQVYRM  321 (429)
T ss_pred             CCCCCEEEEEE-------CCCCCceEEEE
Confidence            99999887765       45566777765

>KOG0649|consensus

Probab=98.33  E-value=5.8e-06  Score=50.19  Aligned_cols=72  Identities=11%  Similarity=0.148  Sum_probs=48.5

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEE
Q psy8803          28 HQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAV  107 (111)
Q Consensus        28 ~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~i  107 (111)
                      -.|.++-..|..+-++.++.|+.++.||+++++....   .+.+. .++.+++-......+ .+|       +.||++++
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~---~rGHt-DYvH~vv~R~~~~qi-lsG-------~EDGtvRv  182 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE---YRGHT-DYVHSVVGRNANGQI-LSG-------AEDGTVRV  182 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE---EcCCc-ceeeeeeecccCcce-eec-------CCCccEEE
Confidence            3688898999766666666799999999999865541   11111 233444443344454 456       89999999


Q ss_pred             eecC
Q psy8803         108 FSLQ  111 (111)
Q Consensus       108 w~~~  111 (111)
                      ||.+
T Consensus       183 Wd~k  186 (325)
T KOG0649|consen  183 WDTK  186 (325)
T ss_pred             Eecc
Confidence            9975

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.33  E-value=1.8e-05  Score=52.15  Aligned_cols=90  Identities=11%  Similarity=0.117  Sum_probs=59.0

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeC---CCeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSK---DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..+.++|.. +.....+..+...+...+|+|||+.|+..+.   ...|.+||+.++......    ... ......+|+|
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~----~~~-g~~~~~~~SP  249 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA----NFK-GSNSAPAWSP  249 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee----cCC-CCccceEECC
Confidence            356677764 4444455667788999999999998887653   245999999876543311    010 1123568999


Q ss_pred             CCCEEEEeccccCCccccCceEEEee
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      ++..++.+.       +.++...||.
T Consensus       250 DG~~la~~~-------~~~g~~~Iy~  268 (427)
T PRK02889        250 DGRTLAVAL-------SRDGNSQIYT  268 (427)
T ss_pred             CCCEEEEEE-------ccCCCceEEE
Confidence            999887765       4555566664

>KOG0280|consensus

Probab=98.32  E-value=1.5e-06  Score=53.73  Aligned_cols=57  Identities=21%  Similarity=0.009  Sum_probs=47.9

Q ss_pred             cccccCeeeecCCC-Cceeeee-eecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCC
Q psy8803           2 KSWYEEYKRLDYHT-PIVETEV-LTQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         2 ~~~~d~~i~iw~~~-~~~~~~~-~~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      +++.|+.+.-||++ +++.+.. .+-|...|.+|.-+| +...|++|+.|..|++||.++
T Consensus       183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN  242 (339)
T ss_pred             ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence            57899999999999 5554443 456889999998877 578999999999999999985

>KOG2321|consensus

Probab=98.31  E-value=3.3e-06  Score=56.44  Aligned_cols=94  Identities=11%  Similarity=0.107  Sum_probs=65.2

Q ss_pred             CcccccCeeeecCCCCceeeeeeec------ccc-----cEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee---eec
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQ------HTH-----QVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK---YSH   66 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~------~~~-----~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~   66 (111)
                      |.+.-||.|..||.+....+..+..      |.+     .|.++.|+-+|-.++.|..+|.+.|+|++...+..   |..
T Consensus       191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~  270 (703)
T KOG2321|consen  191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY  270 (703)
T ss_pred             EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC
Confidence            3566799999999998766655542      222     39999999999999999999999999999866543   322


Q ss_pred             ceeeeecCceeeEEEccC--CCEEEEeccccCCccccCceEEEee
Q psy8803          67 DMKTFSWKYTQYSQFNES--DTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        67 ~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      .      .|+..+.|.+.  +..+ ++        .....++|||
T Consensus       271 e------~pi~~l~~~~~~~q~~v-~S--------~Dk~~~kiWd  300 (703)
T KOG2321|consen  271 E------LPIKKLDWQDTDQQNKV-VS--------MDKRILKIWD  300 (703)
T ss_pred             c------cceeeecccccCCCceE-Ee--------cchHHhhhcc
Confidence            2      23334445443  3343 33        3467788887

>KOG1963|consensus

Probab=98.29  E-value=6.7e-06  Score=56.80  Aligned_cols=77  Identities=30%  Similarity=0.524  Sum_probs=59.0

Q ss_pred             cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecC--ceeeEEEccCCCEEEEeccccCCccccC
Q psy8803          25 QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWK--YTQYSQFNESDTLLLVSGVHFGTPQSTS  102 (111)
Q Consensus        25 ~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~  102 (111)
                      .|+-.+.+.++||.+++++++..||+|.+|.-....  ........+.|+  .+++++|++++.++ .+|       +.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~--~~~~t~t~lHWH~~~V~~L~fS~~G~~L-lSG-------G~E  272 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS--DDSETCTLLHWHHDEVNSLSFSSDGAYL-LSG-------GRE  272 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccc--cccccceEEEecccccceeEEecCCceE-eec-------ccc
Confidence            366778999999999999999999999999654311  111134556676  78889999999887 455       789


Q ss_pred             ceEEEeecC
Q psy8803         103 GEIAVFSLQ  111 (111)
Q Consensus       103 ~~i~iw~~~  111 (111)
                      +.+..|.+.
T Consensus       273 ~VLv~Wq~~  281 (792)
T KOG1963|consen  273 GVLVLWQLE  281 (792)
T ss_pred             eEEEEEeec
Confidence            999999763

>KOG2315|consensus

Probab=98.29  E-value=1.5e-05  Score=53.03  Aligned_cols=92  Identities=10%  Similarity=0.056  Sum_probs=62.4

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe---CCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS---KDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      .+.|+|.+ +.++..|.  ++.=.++-|+|.|++|+-+|   ..|.+-+||..+.+.+..   ..+   ...+...|+|+
T Consensus       295 kvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~---~~a---~~tt~~eW~Pd  365 (566)
T KOG2315|consen  295 KVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK---FKA---ANTTVFEWSPD  365 (566)
T ss_pred             eEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc---ccc---CCceEEEEcCC
Confidence            34555655 45555442  45557889999999887765   468899999998655541   111   22345689999


Q ss_pred             CCEEEEeccccCCccccCceEEEeec
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +.+++++.+..+-  -.|+.++||++
T Consensus       366 Ge~flTATTaPRl--rvdNg~Kiwhy  389 (566)
T KOG2315|consen  366 GEYFLTATTAPRL--RVDNGIKIWHY  389 (566)
T ss_pred             CcEEEEEeccccE--EecCCeEEEEe
Confidence            9999877644333  45888999985

>KOG4532|consensus

Probab=98.26  E-value=1.9e-05  Score=48.57  Aligned_cols=95  Identities=11%  Similarity=0.121  Sum_probs=61.4

Q ss_pred             ccccCeeeecCCCCceeeeeeecccc--cEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeee---ecceeeeecCcee
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTH--QVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKY---SHDMKTFSWKYTQ   77 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~--~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~---~~~~~~~~~~~~~   77 (111)
                      ++.|.++++.++.-+......  |..  .+..+..++|++++++.++...+..|.+........   ..+-..    ...
T Consensus       134 ~sndht~k~~~~~~~s~~~~~--h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D----~gF  207 (344)
T KOG4532|consen  134 ASNDHTGKTMVVSGDSNKFAV--HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD----HGF  207 (344)
T ss_pred             ccCCcceeEEEEecCccccee--eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC----Cce
Confidence            466777777776533221111  322  377889999999999999999999998875332211   111111    123


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +..|+..+..+++ +       ..|+++.|||+|
T Consensus       208 ~~S~s~~~~~FAv-~-------~Qdg~~~I~DVR  233 (344)
T KOG4532|consen  208 YNSFSENDLQFAV-V-------FQDGTCAIYDVR  233 (344)
T ss_pred             eeeeccCcceEEE-E-------ecCCcEEEEEec
Confidence            5677777666544 4       789999999986

>KOG2321|consensus

Probab=98.25  E-value=7.3e-06  Score=54.86  Aligned_cols=91  Identities=13%  Similarity=0.226  Sum_probs=64.8

Q ss_pred             CCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee---eecceeeee----cCceeeEEEccCC
Q psy8803          13 YHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK---YSHDMKTFS----WKYTQYSQFNESD   85 (111)
Q Consensus        13 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~~----~~~~~~v~~~~~~   85 (111)
                      ++.+|.-+.-|....+.+.++..++...+|++|+.++.+-.||.+......   ....+....    ...++.++|+-++
T Consensus       161 NLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g  240 (703)
T KOG2321|consen  161 NLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG  240 (703)
T ss_pred             EccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc
Confidence            455566565566566889999999999999999999999999998754332   111221111    1236788999776


Q ss_pred             CEEEEeccccCCccccCceEEEeecC
Q psy8803          86 TLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      -.+ +.|       ...|.|.|+|||
T Consensus       241 L~~-aVG-------ts~G~v~iyDLR  258 (703)
T KOG2321|consen  241 LHV-AVG-------TSTGSVLIYDLR  258 (703)
T ss_pred             eeE-Eee-------ccCCcEEEEEcc
Confidence            554 556       778999999986

>KOG1240|consensus

Probab=98.23  E-value=1.9e-05  Score=56.95  Aligned_cols=90  Identities=17%  Similarity=0.175  Sum_probs=61.7

Q ss_pred             cCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCcee---eeecceeeeecCceeeEEEccCCCE
Q psy8803          12 DYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKV---KYSHDMKTFSWKYTQYSQFNESDTL   87 (111)
Q Consensus        12 w~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~   87 (111)
                      |..+ |..+.++..|...+..++.+++ +.+|++|+.||++++|+.+.....   ..+........+.+..+.+.+.+..
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            5554 7788888889999998888775 599999999999999998752211   1111111112234556777777777


Q ss_pred             EEEeccccCCccccCceEEEeec
Q psy8803          88 LLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        88 ~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++++        +.||.|++.++
T Consensus      1113 ~Av~--------t~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1113 FAVS--------TKDGSVRVLRI 1127 (1431)
T ss_pred             EEEE--------cCCCeEEEEEc
Confidence            6553        57888988765

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.21  E-value=6.3e-05  Score=49.65  Aligned_cols=93  Identities=12%  Similarity=0.098  Sum_probs=58.9

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe---CCCeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS---KDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..+.++|..... ...+..+...+....|+|||+.|+..+   .+..+.+|++..+....-. ...    ......+|+|
T Consensus       179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~----~~~~~~~~SP  252 (429)
T PRK03629        179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFP----RHNGAPAFSP  252 (429)
T ss_pred             eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCC----CCcCCeEECC
Confidence            368888887443 334455667899999999999887653   2357889998776533211 111    1122468999


Q ss_pred             CCCEEEEeccccCCccccCceEEEeec
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++..++.+...     .....|.+||+
T Consensus       253 DG~~La~~~~~-----~g~~~I~~~d~  274 (429)
T PRK03629        253 DGSKLAFALSK-----TGSLNLYVMDL  274 (429)
T ss_pred             CCCEEEEEEcC-----CCCcEEEEEEC
Confidence            99988876411     11234778876

>KOG0642|consensus

Probab=98.15  E-value=7.1e-06  Score=54.47  Aligned_cols=80  Identities=18%  Similarity=0.265  Sum_probs=59.0

Q ss_pred             eeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC-----ceeeeecceeeeecCceeeEEEccCCCEEEEeccccC
Q psy8803          22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP-----SKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFG   96 (111)
Q Consensus        22 ~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   96 (111)
                      ++..|...+..+.|.|....|++++.|++|++|++...     ..+......+.+. .|+.+++..+.+.++ .+|    
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~-gPVl~v~v~~n~~~~-ysg----  362 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE-GPVLCVVVPSNGEHC-YSG----  362 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEeccc-CceEEEEecCCceEE-Eee----
Confidence            55678899999999999999999999999999999321     1111111223333 577788888888776 555    


Q ss_pred             CccccCceEEEeec
Q psy8803          97 TPQSTSGEIAVFSL  110 (111)
Q Consensus        97 ~~~~~~~~i~iw~~  110 (111)
                         +.|+.|+.|++
T Consensus       363 ---g~Dg~I~~w~~  373 (577)
T KOG0642|consen  363 ---GIDGTIRCWNL  373 (577)
T ss_pred             ---ccCceeeeecc
Confidence               78999999976

>KOG1523|consensus

Probab=98.15  E-value=2.5e-05  Score=48.95  Aligned_cols=94  Identities=21%  Similarity=0.150  Sum_probs=64.2

Q ss_pred             cccCeeeecCCCCc---eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC---ceeeeec-ceeeeecCce
Q psy8803           4 WYEEYKRLDYHTPI---VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP---SKVKYSH-DMKTFSWKYT   76 (111)
Q Consensus         4 ~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~---~~~~~~~-~~~~~~~~~~   76 (111)
                      +-|.--.+|...++   ++...|..++..+.++.|+|..+.|+.++..+.|.||=++..   ..-+|.. +++    +.+
T Consensus        74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPir----Stv  149 (361)
T KOG1523|consen   74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIR----STV  149 (361)
T ss_pred             cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccc----cce
Confidence            44566677887433   455556679999999999999999999999999999877542   2222211 111    334


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      +++.|+|+. .+++.|       +.|++++|+.
T Consensus       150 ~sldWhpnn-VLlaaG-------s~D~k~rVfS  174 (361)
T KOG1523|consen  150 TSLDWHPNN-VLLAAG-------STDGKCRVFS  174 (361)
T ss_pred             eeeeccCCc-ceeccc-------ccCcceeEEE
Confidence            455566665 555666       8899998874

>KOG1409|consensus

Probab=98.14  E-value=2.2e-05  Score=49.70  Aligned_cols=79  Identities=14%  Similarity=0.284  Sum_probs=57.4

Q ss_pred             ceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce-----eeeecceeeeecCceeeEEEccCCCEEEEe
Q psy8803          17 IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK-----VKYSHDMKTFSWKYTQYSQFNESDTLLLVS   91 (111)
Q Consensus        17 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   91 (111)
                      ..++.++.+|.+.+.+++|.+..+.|.++..|.++.+||+-...-     ..|...+..+        ..-+--..+ .+
T Consensus       187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l--------~~~~~t~~l-~S  257 (404)
T KOG1409|consen  187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL--------SYAQHTRQL-IS  257 (404)
T ss_pred             CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh--------hhhhhheee-ee
Confidence            467888899999999999999999999999999999999965432     2243344332        222233343 44


Q ss_pred             ccccCCccccCceEEEeecC
Q psy8803          92 GVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        92 ~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +       +.|+.|.+||+.
T Consensus       258 ~-------~edg~i~~w~mn  270 (404)
T KOG1409|consen  258 C-------GEDGGIVVWNMN  270 (404)
T ss_pred             c-------cCCCeEEEEecc
Confidence            4       689999999974

>KOG4190|consensus

Probab=98.13  E-value=5.2e-06  Score=55.68  Aligned_cols=58  Identities=19%  Similarity=0.247  Sum_probs=47.6

Q ss_pred             cccccCeeeecCCCCc-------eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce
Q psy8803           2 KSWYEEYKRLDYHTPI-------VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK   61 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~   61 (111)
                      +.+.|.+|++|.+++.       .+..+++.|...|..+.|-.+-+.++++  |+-|.+||..-+..
T Consensus       752 SASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~  816 (1034)
T KOG4190|consen  752 SASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRL  816 (1034)
T ss_pred             eccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccch
Confidence            4678999999999753       4677788999999999999888888665  68899999875543

>KOG1645|consensus

Probab=98.11  E-value=1.8e-05  Score=50.98  Aligned_cols=91  Identities=10%  Similarity=0.087  Sum_probs=64.6

Q ss_pred             eeecCCCCceeeeeeecccccEEEEEEcCCCc-EEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCE
Q psy8803           9 KRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR-YFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTL   87 (111)
Q Consensus         9 i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   87 (111)
                      +++.+..+-+...-+.++...|..++|+|..+ ++..++.+.+|+|.|+++......- ...    .++-+++|.-++.+
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~----~~~wSC~wDlde~h  249 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY----NQIWSCCWDLDERH  249 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc----CCceeeeeccCCcc
Confidence            33434333333334556788999999999876 7888899999999999986554310 111    22335777888888


Q ss_pred             EEEeccccCCccccCceEEEeecC
Q psy8803          88 LLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        88 ~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .+.+|       -..|.|.|+|+|
T Consensus       250 ~IYaG-------l~nG~VlvyD~R  266 (463)
T KOG1645|consen  250 VIYAG-------LQNGMVLVYDMR  266 (463)
T ss_pred             eeEEe-------ccCceEEEEEcc
Confidence            89988       888999999986

>KOG1064|consensus

Probab=98.06  E-value=2.4e-05  Score=58.45  Aligned_cols=102  Identities=18%  Similarity=0.249  Sum_probs=74.0

Q ss_pred             cccccCeeeecCCCCceeeeeee-cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee---eec-----------
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLT-QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK---YSH-----------   66 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~-----------   66 (111)
                      |++.||.+++|.-..+..+..+. +-+..|..+.|+.+|+.+..+..||.+-+|.........   |..           
T Consensus      2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~ 2304 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSL 2304 (2439)
T ss_pred             ecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeeehh
Confidence            78899999999999888888775 233889999999999999999999999999886421100   000           


Q ss_pred             -------------------------ceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          67 -------------------------DMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        67 -------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                                               -+....-...+.+++.|....+ .+|       +.+|.|++||+|
T Consensus      2305 ~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qll-isg-------gr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2305 LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLL-ISG-------GRKGEVCLFDIR 2366 (2439)
T ss_pred             hhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEE-Eec-------CCcCcEEEeehH
Confidence                                     0000111234667888877655 666       899999999985

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.04  E-value=0.00024  Score=46.79  Aligned_cols=92  Identities=15%  Similarity=0.112  Sum_probs=57.1

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCC---CeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKD---GYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      .+.++|...+. ...+..+...+....|+|||+.|+..+.+   ..|.+|++.++...... ...    ......+|+|+
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~----g~~~~~~~SpD  253 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFE----GLNGAPAWSPD  253 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCC----CCcCCeEECCC
Confidence            46777776433 44455567788999999999988776533   36888898876543311 011    11224678999


Q ss_pred             CCEEEEeccccCCccccCceEEEeec
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +..++.+...     .....|.++|+
T Consensus       254 G~~la~~~~~-----~g~~~Iy~~d~  274 (430)
T PRK00178        254 GSKLAFVLSK-----DGNPEIYVMDL  274 (430)
T ss_pred             CCEEEEEEcc-----CCCceEEEEEC
Confidence            9888765411     11235777675

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.03  E-value=0.00023  Score=46.56  Aligned_cols=93  Identities=18%  Similarity=0.172  Sum_probs=58.4

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCC---CeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKD---GYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..+.++|.. +.....+..+...+....|+||++.|+.....   ..|.+|++.++......    ... ......+|+|
T Consensus       170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~----~~~-~~~~~~~~sp  243 (417)
T TIGR02800       170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA----SFP-GMNGAPAFSP  243 (417)
T ss_pred             ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee----cCC-CCccceEECC
Confidence            346777765 33344555566678899999999988877543   47999999876443211    111 1223468899


Q ss_pred             CCCEEEEeccccCCccccCceEEEeec
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++..++++...     .....|.+||+
T Consensus       244 Dg~~l~~~~~~-----~~~~~i~~~d~  265 (417)
T TIGR02800       244 DGSKLAVSLSK-----DGNPDIYVMDL  265 (417)
T ss_pred             CCCEEEEEECC-----CCCccEEEEEC
Confidence            99888765411     11234777765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2695|consensus

Probab=97.98  E-value=3.1e-05  Score=49.13  Aligned_cols=95  Identities=11%  Similarity=0.048  Sum_probs=62.2

Q ss_pred             ccCeeeecCCCCc-----eeeeeeecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCce----eeeecceeeeecC
Q psy8803           5 YEEYKRLDYHTPI-----VETEVLTQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPSK----VKYSHDMKTFSWK   74 (111)
Q Consensus         5 ~d~~i~iw~~~~~-----~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~----~~~~~~~~~~~~~   74 (111)
                      -+|.|-..|++.+     .+...+. |.+.|.++.--. +++.|...+.+++|++||.+..++    +.+.+-++..+. 
T Consensus       272 RngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~-  349 (425)
T KOG2695|consen  272 RNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAY-  349 (425)
T ss_pred             cCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccc-
Confidence            3567777888743     3455555 889999988766 788999999999999999987544    223333333221 


Q ss_pred             ceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                        ..+-..++. .++.++       +.|-..+||.++
T Consensus       350 --l~~~v~~ee-g~I~s~-------GdDcytRiWsl~  376 (425)
T KOG2695|consen  350 --LPAHVKEEE-GSIFSV-------GDDCYTRIWSLD  376 (425)
T ss_pred             --ccccccccc-ceEEEc-------cCeeEEEEEecc
Confidence              112223333 444555       789999999864

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.96  E-value=0.0002  Score=47.31  Aligned_cols=81  Identities=10%  Similarity=0.098  Sum_probs=52.3

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEE-EEeCCCe--EEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFA-TCSKDGY--ILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      +..|.+||+.+++.. .+..+.+.+....|+|||+.|+ +.+.++.  |.++|+.+........ ..    ......+|+
T Consensus       225 ~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~-~~----~~~~~~~~s  298 (435)
T PRK05137        225 RPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD-SP----AIDTSPSYS  298 (435)
T ss_pred             CCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC-CC----CccCceeEc
Confidence            467999999877543 3455566777889999998765 5555554  7777887655433111 00    122346789


Q ss_pred             cCCCEEEEec
Q psy8803          83 ESDTLLLVSG   92 (111)
Q Consensus        83 ~~~~~~~~~~   92 (111)
                      |++..++.+.
T Consensus       299 pDG~~i~f~s  308 (435)
T PRK05137        299 PDGSQIVFES  308 (435)
T ss_pred             CCCCEEEEEE
Confidence            9998887654

>KOG1334|consensus

Probab=97.94  E-value=2.1e-05  Score=51.72  Aligned_cols=103  Identities=12%  Similarity=0.036  Sum_probs=70.6

Q ss_pred             CcccccCeeeecCCCCceeeeee-ecccccEEEEEEcCC--CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCcee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVL-TQHTHQVLHVSFSHN--GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~i~~s~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   77 (111)
                      ++++.|..|-+||-..++....+ .+|...|....|-|.  .+.|++++.||.+++=.+..............+. .++.
T Consensus       158 ~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~-g~vh  236 (559)
T KOG1334|consen  158 ASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHE-GPVH  236 (559)
T ss_pred             eccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceeccccc-Cccc
Confidence            57889999999999988877766 489999999999884  6789999999999887765322221111111111 2344


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .++.-|...+-+.++       +.|+.+.-.|+|
T Consensus       237 klav~p~sp~~f~S~-------geD~~v~~~Dlr  263 (559)
T KOG1334|consen  237 KLAVEPDSPKPFLSC-------GEDAVVFHIDLR  263 (559)
T ss_pred             eeeecCCCCCccccc-------ccccceeeeeec
Confidence            455566666556666       677777766654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.94  E-value=3.2e-05  Score=33.49  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=22.1

Q ss_pred             CceeeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          74 KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      .++++++|+|++..++ ++       +.|+.|++||
T Consensus        12 ~~i~~i~~~~~~~~~~-s~-------~~D~~i~vwd   39 (39)
T PF00400_consen   12 SSINSIAWSPDGNFLA-SG-------SSDGTIRVWD   39 (39)
T ss_dssp             SSEEEEEEETTSSEEE-EE-------ETTSEEEEEE
T ss_pred             CcEEEEEEecccccce-ee-------CCCCEEEEEC
Confidence            4567788898977764 45       7899999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2315|consensus

Probab=97.91  E-value=0.00045  Score=46.28  Aligned_cols=89  Identities=17%  Similarity=0.173  Sum_probs=60.8

Q ss_pred             eeecCCCCceeeeeeecccccEEEEEEcCCCcEEEE--EeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCC
Q psy8803           9 KRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFAT--CSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDT   86 (111)
Q Consensus         9 i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   86 (111)
                      +.+.++........+. -.+.|.++.|+|+++.++.  |-...++.|+|++.....-..       -.|-+++-|+|.+.
T Consensus       253 Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-------egpRN~~~fnp~g~  324 (566)
T KOG2315|consen  253 LYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-------EGPRNTAFFNPHGN  324 (566)
T ss_pred             EEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-------CCCccceEECCCCC
Confidence            4444444223333333 4789999999999976655  457789999999876544311       14456777899999


Q ss_pred             EEEEeccccCCccccCceEEEeec
Q psy8803          87 LLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .++.+|.+..     .|.|.|||+
T Consensus       325 ii~lAGFGNL-----~G~mEvwDv  343 (566)
T KOG2315|consen  325 IILLAGFGNL-----PGDMEVWDV  343 (566)
T ss_pred             EEEEeecCCC-----CCceEEEec
Confidence            9988885443     456999997

>KOG4547|consensus

Probab=97.87  E-value=0.00031  Score=47.09  Aligned_cols=95  Identities=12%  Similarity=-0.003  Sum_probs=72.5

Q ss_pred             ccccCeeeecCCCCceeeeeee--cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLT--QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +-..|.|.+|+...++...++.  .|.+.|.++.++.+-..|.+++.|+.+-.|+....+........    -..+.+++
T Consensus        76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~----~~~~~sl~  151 (541)
T KOG4547|consen   76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ----KPLVSSLC  151 (541)
T ss_pred             ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC----CCccceEE
Confidence            4567889999999998888886  58999999999999999999999999999999876655421111    13355678


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .+|++..+++ +         .++|++||++
T Consensus       152 is~D~~~l~~-a---------s~~ik~~~~~  172 (541)
T KOG4547|consen  152 ISPDGKILLT-A---------SRQIKVLDIE  172 (541)
T ss_pred             EcCCCCEEEe-c---------cceEEEEEcc
Confidence            8888655543 3         5789999864

>KOG4714|consensus

Probab=97.87  E-value=6e-06  Score=50.47  Aligned_cols=57  Identities=21%  Similarity=0.299  Sum_probs=49.7

Q ss_pred             cccccCeeeecCCCCce-eeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCC
Q psy8803           2 KSWYEEYKRLDYHTPIV-ETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~-~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~   58 (111)
                      .+..||.+.+||.+... +...++.|...++.+-|+|. ...|+++++||.+-.||..+
T Consensus       197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            46789999999999774 55567899999999999994 78999999999999999874

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.86  E-value=0.0004  Score=45.96  Aligned_cols=81  Identities=11%  Similarity=0.041  Sum_probs=49.4

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEE-eCCC--eEEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATC-SKDG--YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      +..+.+|++..++... +....+.+....|+|||+.|+.. ..++  .|.+||+.++........     ........|+
T Consensus       222 ~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-----~~~~~~~~wS  295 (429)
T PRK03629        222 RSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-----RSNNTEPTWF  295 (429)
T ss_pred             CcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-----CCCcCceEEC
Confidence            3467888887664322 22222334568999999877754 3344  588899887654432111     0123456889


Q ss_pred             cCCCEEEEec
Q psy8803          83 ESDTLLLVSG   92 (111)
Q Consensus        83 ~~~~~~~~~~   92 (111)
                      |++..++.+.
T Consensus       296 PDG~~I~f~s  305 (429)
T PRK03629        296 PDSQNLAYTS  305 (429)
T ss_pred             CCCCEEEEEe
Confidence            9998887665

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.83  E-value=0.00046  Score=45.65  Aligned_cols=80  Identities=15%  Similarity=0.132  Sum_probs=50.3

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEE-EEeCCC--eEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFA-TCSKDG--YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..+.+||+..++.. .+....+......|+|||+.|+ +.+.++  .|.+||+.++........     .......+|+|
T Consensus       228 ~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~-----~~~~~~~~~sp  301 (433)
T PRK04922        228 SAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH-----FGIDTEPTWAP  301 (433)
T ss_pred             cEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccC-----CCCccceEECC
Confidence            46888898776543 2333444556789999998665 445544  589999887654331110     01123468899


Q ss_pred             CCCEEEEec
Q psy8803          84 SDTLLLVSG   92 (111)
Q Consensus        84 ~~~~~~~~~   92 (111)
                      ++..++.+.
T Consensus       302 DG~~l~f~s  310 (433)
T PRK04922        302 DGKSIYFTS  310 (433)
T ss_pred             CCCEEEEEE
Confidence            998887765

>KOG2695|consensus

Probab=97.80  E-value=3.9e-05  Score=48.71  Aligned_cols=62  Identities=10%  Similarity=0.008  Sum_probs=47.5

Q ss_pred             cccccCeeeecCCCCcee---eeeeecccccEEEEE--EcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           2 KSWYEEYKRLDYHTPIVE---TEVLTQHTHQVLHVS--FSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~---~~~~~~~~~~v~~i~--~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      +|..+|+|++||.+-.++   +...+||-..-.-+-  ..+....++++++|+..+||.++.+..+.
T Consensus       316 aS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~  382 (425)
T KOG2695|consen  316 ASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC  382 (425)
T ss_pred             eccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence            578899999999987665   888888854433333  35566778889999999999999876554

>KOG4714|consensus

Probab=97.79  E-value=3.5e-05  Score=47.24  Aligned_cols=86  Identities=12%  Similarity=0.120  Sum_probs=53.9

Q ss_pred             eeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCcee-----eeecceeeeecCceeeEEEc
Q psy8803           9 KRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKV-----KYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         9 i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~   82 (111)
                      .+.|++.+.+.+..-......|.+++-+|. .+++++|++||.+-+||.++..-.     .|..+++        -|-|+
T Consensus       161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~--------eV~FH  232 (319)
T KOG4714|consen  161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIW--------EVHFH  232 (319)
T ss_pred             eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhh--------heecc
Confidence            345555544322221222344899999996 567777889999999999975211     1444444        45567


Q ss_pred             c-CCCEEEEeccccCCccccCceEEEeec
Q psy8803          83 E-SDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        83 ~-~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      | +..+++++        +.||.+--||-
T Consensus       233 pk~p~~Lft~--------sedGslw~wda  253 (319)
T KOG4714|consen  233 PKNPEHLFTC--------SEDGSLWHWDA  253 (319)
T ss_pred             CCCchheeEe--------cCCCcEEEEcC
Confidence            7 44566553        67888888873

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.79  E-value=0.00032  Score=46.37  Aligned_cols=80  Identities=13%  Similarity=0.097  Sum_probs=48.6

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEE-EEeCCCeEEEEec--CCCceeeeecceeeeecCceeeEEEcc
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFA-TCSKDGYILVWTS--SYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~d~~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..|.+||+.+++.. .+....+......|+|||+.|+ +.+.++...+|.+  .......    +... ........|+|
T Consensus       220 ~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----lt~~-~~~~~~~~wSp  293 (427)
T PRK02889        220 PVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR----LTQS-SGIDTEPFFSP  293 (427)
T ss_pred             cEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE----CCCC-CCCCcCeEEcC
Confidence            45888999877643 2333345567889999998776 5667777666655  3333221    1100 01123457899


Q ss_pred             CCCEEEEec
Q psy8803          84 SDTLLLVSG   92 (111)
Q Consensus        84 ~~~~~~~~~   92 (111)
                      ++..++.+.
T Consensus       294 DG~~l~f~s  302 (427)
T PRK02889        294 DGRSIYFTS  302 (427)
T ss_pred             CCCEEEEEe
Confidence            998887654

>KOG3881|consensus

Probab=97.78  E-value=4.8e-05  Score=48.77  Aligned_cols=61  Identities=10%  Similarity=-0.031  Sum_probs=52.5

Q ss_pred             ccccCeeeecCCCCceeeee-eecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           3 SWYEEYKRLDYHTPIVETEV-LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      +..-+.+..+|.+.++.... +++..+.+..+-.+|.+.+++++|.|+.++|+|+.+.....
T Consensus       265 gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  265 GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             ecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence            34557788899999987776 88999999999999999999999999999999999855443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.78  E-value=0.0027  Score=41.42  Aligned_cols=60  Identities=12%  Similarity=0.052  Sum_probs=45.6

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe-CCCeEEEEecCCCceee
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS-KDGYILVWTSSYPSKVK   63 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~   63 (111)
                      ++.||.+.++|+.+.+.+..+.. ......+++++||++++.+. .++.+.++|.++.+..+
T Consensus        54 ~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~  114 (369)
T PF02239_consen   54 ANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK  114 (369)
T ss_dssp             EETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEE
T ss_pred             EcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccccccee
Confidence            35689999999999998888863 44568899999999888765 68899999999876665

...

>KOG1354|consensus

Probab=97.76  E-value=0.0001  Score=46.89  Aligned_cols=78  Identities=17%  Similarity=0.316  Sum_probs=52.5

Q ss_pred             cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC-Cceee----eecceeeeecCceeeEEEccCCCEEEEeccccCCcc
Q psy8803          25 QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY-PSKVK----YSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQ   99 (111)
Q Consensus        25 ~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~-~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   99 (111)
                      +|+..|..+++..|+..++++. |-+|.+|+++- .+.+.    ....+-.+. .-+++..|+|....+++=.       
T Consensus       162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLt-eVITsaEFhp~~cn~f~YS-------  232 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELT-EVITSAEFHPHHCNVFVYS-------  232 (433)
T ss_pred             cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHH-HHHhhhccCHhHccEEEEe-------
Confidence            4788899999999999998886 67999999874 22221    000111111 1245668999766555544       


Q ss_pred             ccCceEEEeecC
Q psy8803         100 STSGEIAVFSLQ  111 (111)
Q Consensus       100 ~~~~~i~iw~~~  111 (111)
                      +..|+|++.|||
T Consensus       233 SSKGtIrLcDmR  244 (433)
T KOG1354|consen  233 SSKGTIRLCDMR  244 (433)
T ss_pred             cCCCcEEEeech
Confidence            678999999987

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.75  E-value=0.00075  Score=44.95  Aligned_cols=79  Identities=14%  Similarity=0.100  Sum_probs=48.6

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeC-CC--eEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSK-DG--YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      .+.++|..... ...+..+...+....|+|||+.|+..+. ++  .|.++|+.++...... ...    ......+|+|+
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt-~~~----g~~~~~~wSPD  272 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT-SFP----GINGAPRFSPD  272 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec-CCC----CCcCCeeECCC
Confidence            45555654332 3344555667888999999998876543 33  5888888776543211 111    11224688999


Q ss_pred             CCEEEEec
Q psy8803          85 DTLLLVSG   92 (111)
Q Consensus        85 ~~~~~~~~   92 (111)
                      +..++.+.
T Consensus       273 G~~La~~~  280 (448)
T PRK04792        273 GKKLALVL  280 (448)
T ss_pred             CCEEEEEE
Confidence            99887765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.73  E-value=0.0013  Score=48.10  Aligned_cols=74  Identities=14%  Similarity=0.109  Sum_probs=52.0

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeec---------ceeeeecCceeeEEEccCCCEEEEeccccCCccc
Q psy8803          30 VLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSH---------DMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQS  100 (111)
Q Consensus        30 v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  100 (111)
                      -..++++++|+++++-..+++|++||..+........         ......+.....+++++++.. +++-       .
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~l-yVaD-------t  877 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRL-FVAD-------T  877 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCE-EEEE-------C
Confidence            3578999999999999999999999998765432111         011112234668899998864 4554       6


Q ss_pred             cCceEEEeecC
Q psy8803         101 TSGEIAVFSLQ  111 (111)
Q Consensus       101 ~~~~i~iw~~~  111 (111)
                      .++.|++||++
T Consensus       878 ~Nn~Irvid~~  888 (1057)
T PLN02919        878 NNSLIRYLDLN  888 (1057)
T ss_pred             CCCEEEEEECC
Confidence            78889999974

>KOG0309|consensus

Probab=97.72  E-value=0.00012  Score=50.83  Aligned_cols=99  Identities=23%  Similarity=0.295  Sum_probs=68.9

Q ss_pred             cccccCeeeecCCCC---ceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCcee
Q psy8803           2 KSWYEEYKRLDYHTP---IVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~---~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   77 (111)
                      ++.....--+|++..   ......+-+|...|..+.|.|. -..+++++-|..+..||++......+....+.   +...
T Consensus        86 Vsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~---s~as  162 (1081)
T KOG0309|consen   86 VSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR---SAAS  162 (1081)
T ss_pred             EecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc---ccCc
Confidence            344555566777752   2344456789999999999996 56899999999999999998765543222222   2334


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .|+++-.+..++++        +..+-|.+||+|
T Consensus       163 qVkwnyk~p~vlas--------shg~~i~vwd~r  188 (1081)
T KOG0309|consen  163 QVKWNYKDPNVLAS--------SHGNDIFVWDLR  188 (1081)
T ss_pred             eeeecccCcchhhh--------ccCCceEEEecc
Confidence            67777766666553        567779999975

>KOG1538|consensus

Probab=97.68  E-value=0.00026  Score=48.86  Aligned_cols=65  Identities=12%  Similarity=0.274  Sum_probs=47.8

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCceeeEEEccCCCEEEEeccccCCccccCce
Q psy8803          29 QVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGE  104 (111)
Q Consensus        29 ~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  104 (111)
                      .|..++|-|||..|+-+.. .++.+||...+..++    |...+        ++|+++.++.. +++|       +.|..
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtV--------ycVAys~dGkr-FASG-------~aDK~   76 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTV--------YCVAYAKDGKR-FASG-------SADKS   76 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceE--------EEEEEccCCce-eccC-------CCcee
Confidence            7889999999876666553 478999998876554    44444        45566667665 5777       88999


Q ss_pred             EEEeec
Q psy8803         105 IAVFSL  110 (111)
Q Consensus       105 i~iw~~  110 (111)
                      |-+|+-
T Consensus        77 VI~W~~   82 (1081)
T KOG1538|consen   77 VIIWTS   82 (1081)
T ss_pred             EEEecc
Confidence            999974

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.66  E-value=0.0031  Score=42.16  Aligned_cols=99  Identities=6%  Similarity=0.003  Sum_probs=68.6

Q ss_pred             ccccC-eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           3 SWYEE-YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         3 ~~~d~-~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +..|| .+-|+|...++ ...+...-+.|.++..+++|..++.+.....|-+.|+.++....-..    .....++...+
T Consensus       377 gt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk----S~~~lItdf~~  451 (668)
T COG4946         377 GTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK----SEYGLITDFDW  451 (668)
T ss_pred             eccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc----cccceeEEEEE
Confidence            45677 79999998666 44566678899999999999999999888888888998876543111    11234455667


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +|+...++.+ .+.+.   ....|+++|+
T Consensus       452 ~~nsr~iAYa-fP~gy---~tq~Iklydm  476 (668)
T COG4946         452 HPNSRWIAYA-FPEGY---YTQSIKLYDM  476 (668)
T ss_pred             cCCceeEEEe-cCcce---eeeeEEEEec
Confidence            7777766543 22222   2456888876

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.63  E-value=0.00018  Score=48.37  Aligned_cols=55  Identities=13%  Similarity=0.066  Sum_probs=44.3

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      .+..||+|.+||...+....  ....-....++|+|+|..++.|++.|.+.+||+.-
T Consensus       276 lGC~DgSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  276 LGCEDGSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEecCCeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            46789999999998764332  22344567899999999999999999999999864

>KOG3914|consensus

Probab=97.60  E-value=0.00011  Score=47.11  Aligned_cols=60  Identities=15%  Similarity=0.154  Sum_probs=42.4

Q ss_pred             cccccCeeeecCCCCceeeeee-ecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVL-TQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV   62 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~   62 (111)
                      ++.-|++|++-.+...--+..| .||...|..++.-+ +++|+++|.|+++++||+.+++.+
T Consensus       168 taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  168 TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             EecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecccCCcc
Confidence            3445666666554433333333 57999999998875 556889999999999999986544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.58  E-value=0.0051  Score=39.89  Aligned_cols=96  Identities=13%  Similarity=0.064  Sum_probs=63.4

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEE-e---------CCCeEEEEecCCCceeeeecc--e-eeeec
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATC-S---------KDGYILVWTSSYPSKVKYSHD--M-KTFSW   73 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~---------~d~~i~iw~~~~~~~~~~~~~--~-~~~~~   73 (111)
                      ++|.+.|..+.+.+.++..-... ..+ ++||++.|..+ +         .+..|.+||..+.+.......  - .....
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            78999999988888877632211 224 89998765555 4         478999999998776652110  0 10011


Q ss_pred             CceeeEEEccCCCEEEEeccccCCcccc-CceEEEeecC
Q psy8803          74 KYTQYSQFNESDTLLLVSGVHFGTPQST-SGEIAVFSLQ  111 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~i~iw~~~  111 (111)
                      ......+++|++..++++.       -. ++.|.+.|+.
T Consensus       105 ~~~~~~~ls~dgk~l~V~n-------~~p~~~V~VvD~~  136 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQ-------FSPSPAVGVVDLE  136 (352)
T ss_pred             CccceEEECCCCCEEEEec-------CCCCCEEEEEECC
Confidence            2234678999999988765       23 6778888863

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.53  E-value=0.0062  Score=39.25  Aligned_cols=98  Identities=14%  Similarity=0.186  Sum_probs=59.9

Q ss_pred             cccCeeeecCCC--Cce--eeeeeec----c--cccEEEEEEcCCCcEEEEEe-CCCeEEEEecCC--Cceeeeecceee
Q psy8803           4 WYEEYKRLDYHT--PIV--ETEVLTQ----H--THQVLHVSFSHNGRYFATCS-KDGYILVWTSSY--PSKVKYSHDMKT   70 (111)
Q Consensus         4 ~~d~~i~iw~~~--~~~--~~~~~~~----~--~~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~--~~~~~~~~~~~~   70 (111)
                      ..+++|.++++.  .+.  .+.....    .  ......|.++||+++|..+. ....|.+|++..  +.. .....+..
T Consensus       211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-~~~~~~~~  289 (345)
T PF10282_consen  211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-TLVQTVPT  289 (345)
T ss_dssp             TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-EEEEEEEE
T ss_pred             CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-EEEEEEeC
Confidence            345667777776  332  2222211    1  12578899999998766654 566899999943  332 21112222


Q ss_pred             eecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          71 FSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                       .....+.++++|++..++++.       ..++.|.+|++
T Consensus       290 -~G~~Pr~~~~s~~g~~l~Va~-------~~s~~v~vf~~  321 (345)
T PF10282_consen  290 -GGKFPRHFAFSPDGRYLYVAN-------QDSNTVSVFDI  321 (345)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEE-------TTTTEEEEEEE
T ss_pred             -CCCCccEEEEeCCCCEEEEEe-------cCCCeEEEEEE
Confidence             123467899999999999988       77788998865

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409|consensus

Probab=97.53  E-value=0.00024  Score=45.21  Aligned_cols=56  Identities=20%  Similarity=0.275  Sum_probs=46.1

Q ss_pred             ccccCeeeecCCCCce-eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           3 SWYEEYKRLDYHTPIV-ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      ...|..+-+||+--.+ ....+.+|.+.|..+...+..+.+.++++|+.|-+|+++.
T Consensus       215 g~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  215 GASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            3467889999996432 3456678999999999888888999999999999999874

>KOG4190|consensus

Probab=97.52  E-value=6.4e-05  Score=50.72  Aligned_cols=40  Identities=20%  Similarity=0.304  Sum_probs=34.1

Q ss_pred             eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803          19 ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus        19 ~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      .+..+.||+..|..+.--.+.+-+++++.|+++++|.++.
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~  766 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKP  766 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEecc
Confidence            3557789999999887766778899999999999999975

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.49  E-value=0.00081  Score=30.64  Aligned_cols=31  Identities=23%  Similarity=0.314  Sum_probs=28.2

Q ss_pred             cccEEEEEEcCCCcEEEEEeCCCeEEEEecC
Q psy8803          27 THQVLHVSFSHNGRYFATCSKDGYILVWTSS   57 (111)
Q Consensus        27 ~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~   57 (111)
                      ...|.+++|+|...+||.+..+|.+.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4568999999999999999999999999884

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.48  E-value=0.0037  Score=40.93  Aligned_cols=80  Identities=13%  Similarity=0.049  Sum_probs=49.1

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEE-EEeCCC--eEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFA-TCSKDG--YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..|.+||+.+++... +..+.+.+..+.|+||++.|+ +.+.++  .|.+|++.+......    .... ......+|+|
T Consensus       214 ~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l----~~~~-~~~~~~~~s~  287 (417)
T TIGR02800       214 PEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL----TNGP-GIDTEPSWSP  287 (417)
T ss_pred             cEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC----CCCC-CCCCCEEECC
Confidence            468899988775432 333555667789999998665 444443  588888876543321    1000 1122457888


Q ss_pred             CCCEEEEec
Q psy8803          84 SDTLLLVSG   92 (111)
Q Consensus        84 ~~~~~~~~~   92 (111)
                      ++..++.+.
T Consensus       288 dg~~l~~~s  296 (417)
T TIGR02800       288 DGKSIAFTS  296 (417)
T ss_pred             CCCEEEEEE
Confidence            888876654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.42  E-value=0.0029  Score=42.02  Aligned_cols=81  Identities=19%  Similarity=0.216  Sum_probs=49.8

Q ss_pred             eeeeecccccEEEEEEcCCCcEEEEEeCC---CeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccC
Q psy8803          20 TEVLTQHTHQVLHVSFSHNGRYFATCSKD---GYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFG   96 (111)
Q Consensus        20 ~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   96 (111)
                      ...+..+...+....|+|||+.|+..+.+   ..|.+||+.++.........     .......|+|++..++.+...  
T Consensus       319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~-----~~~~~p~wSpDG~~L~f~~~~--  391 (428)
T PRK01029        319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP-----ENKESPSWAIDSLHLVYSAGN--  391 (428)
T ss_pred             eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC-----CCccceEECCCCCEEEEEECC--
Confidence            34444444566788999999988766432   46889999876544321110     122346788999888766521  


Q ss_pred             CccccCceEEEeec
Q psy8803          97 TPQSTSGEIAVFSL  110 (111)
Q Consensus        97 ~~~~~~~~i~iw~~  110 (111)
                         .....|.++|+
T Consensus       392 ---~g~~~L~~vdl  402 (428)
T PRK01029        392 ---SNESELYLISL  402 (428)
T ss_pred             ---CCCceEEEEEC
Confidence               12345777765

>KOG0309|consensus

Probab=97.42  E-value=0.00018  Score=50.07  Aligned_cols=100  Identities=13%  Similarity=0.062  Sum_probs=67.8

Q ss_pred             CcccccCeeeecCCCCc-eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           1 KKSWYEEYKRLDYHTPI-VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      |+-+-|-.+..||.++- .++..+..-......++|+-..-.+...+...-+.+||.+.+....+..+-   ....++.+
T Consensus       131 atcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~---~vs~vn~~  207 (1081)
T KOG0309|consen  131 ATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG---HVSSVNSI  207 (1081)
T ss_pred             eeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc---cceeeehH
Confidence            45677889999999854 566666655667789999875444444444567999999876544432111   12445567


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +|+.-....+.+.       +.|++|++||.
T Consensus       208 ~fnr~~~s~~~s~-------~~d~tvkfw~y  231 (1081)
T KOG0309|consen  208 DFNRFKYSEIMSS-------SNDGTVKFWDY  231 (1081)
T ss_pred             HHhhhhhhhhccc-------CCCCceeeecc
Confidence            7777655555665       78999999986

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.38  E-value=0.0046  Score=40.86  Aligned_cols=79  Identities=14%  Similarity=0.082  Sum_probs=47.1

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEE-EEeCCC--eEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFA-TCSKDG--YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      .|.+|++.+++... +....+.+....|+|||+.|+ +...++  .|.++|+.++........ .    .......|+|+
T Consensus       224 ~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~----~~~~~~~~spD  297 (430)
T PRK00178        224 RIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNH-P----AIDTEPFWGKD  297 (430)
T ss_pred             EEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccC-C----CCcCCeEECCC
Confidence            56777877664332 332334455789999998776 444444  578888887654321110 0    11224578899


Q ss_pred             CCEEEEec
Q psy8803          85 DTLLLVSG   92 (111)
Q Consensus        85 ~~~~~~~~   92 (111)
                      +..++.+.
T Consensus       298 g~~i~f~s  305 (430)
T PRK00178        298 GRTLYFTS  305 (430)
T ss_pred             CCEEEEEE
Confidence            88877665

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.38  E-value=0.005  Score=41.11  Aligned_cols=79  Identities=16%  Similarity=0.124  Sum_probs=46.1

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEE-EeCCCe--EEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFAT-CSKDGY--ILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~~~d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      .|.++|+.+++... +....+......|+|||+.|+. ...++.  |.++|+.++........     .......+|+|+
T Consensus       243 ~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~-----~~~~~~p~wSpD  316 (448)
T PRK04792        243 EIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH-----RAIDTEPSWHPD  316 (448)
T ss_pred             EEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC-----CCCccceEECCC
Confidence            46777777665322 2222233446799999987764 455664  77777776543321110     012234678999


Q ss_pred             CCEEEEec
Q psy8803          85 DTLLLVSG   92 (111)
Q Consensus        85 ~~~~~~~~   92 (111)
                      +..++.+.
T Consensus       317 G~~I~f~s  324 (448)
T PRK04792        317 GKSLIFTS  324 (448)
T ss_pred             CCEEEEEE
Confidence            98887765

>KOG4497|consensus

Probab=97.34  E-value=0.0007  Score=43.11  Aligned_cols=94  Identities=11%  Similarity=0.102  Sum_probs=62.5

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEE-eCCCeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATC-SKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      .+..+-|-|.++-+..+-+. .-..|.-+.|..|..+++++ ..++.+.+|++...+-...   +-+.. .+...++|+|
T Consensus        27 ~~yrlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck---Ideg~-agls~~~WSP  101 (447)
T KOG4497|consen   27 SRYRLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK---IDEGQ-AGLSSISWSP  101 (447)
T ss_pred             eeeEEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE---eccCC-CcceeeeECC
Confidence            34455566655444332222 24577888999998776665 5677999999976543321   21111 3455778999


Q ss_pred             CCCEEEEeccccCCccccCceEEEeec
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++.+++.+.       ..+-.|.+|.+
T Consensus       102 dgrhiL~ts-------eF~lriTVWSL  121 (447)
T KOG4497|consen  102 DGRHILLTS-------EFDLRITVWSL  121 (447)
T ss_pred             CcceEeeee-------cceeEEEEEEe
Confidence            999998887       78888999976

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.31  E-value=0.0054  Score=40.77  Aligned_cols=96  Identities=14%  Similarity=0.124  Sum_probs=49.6

Q ss_pred             cCeeeecCCCCc---eeeeeeecccccEEEEEEcCCCcEEEEEe-CCCeEEEEec--CC-CceeeeecceeeeecCceee
Q psy8803           6 EEYKRLDYHTPI---VETEVLTQHTHQVLHVSFSHNGRYFATCS-KDGYILVWTS--SY-PSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         6 d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~--~~-~~~~~~~~~~~~~~~~~~~~   78 (111)
                      |..+.+|++..+   +.........+......|+|||+.|+..+ .++...+|.+  .. .....   .+... ......
T Consensus       256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~---~lt~~-~~~~~~  331 (428)
T PRK01029        256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR---LLTKK-YRNSSC  331 (428)
T ss_pred             ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE---EeccC-CCCccc
Confidence            344555666542   22222222223445679999999777654 4565555543  22 11111   01100 012335


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .+|+|++..++.+....     ....|.+||+
T Consensus       332 p~wSPDG~~Laf~~~~~-----g~~~I~v~dl  358 (428)
T PRK01029        332 PAWSPDGKKIAFCSVIK-----GVRQICVYDL  358 (428)
T ss_pred             eeECCCCCEEEEEEcCC-----CCcEEEEEEC
Confidence            67899999887765221     1345888875

>KOG1354|consensus

Probab=97.29  E-value=0.00091  Score=42.79  Aligned_cols=99  Identities=18%  Similarity=0.210  Sum_probs=59.1

Q ss_pred             ccccCeeeecCCCCcee----------------eeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC-cee---
Q psy8803           3 SWYEEYKRLDYHTPIVE----------------TEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP-SKV---   62 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~----------------~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~-~~~---   62 (111)
                      |+.-|+|++-|.++..+                ...|.+--+.|..+.|++.|+++++...- ++++||+.-. .+.   
T Consensus       232 SSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~  310 (433)
T KOG1354|consen  232 SSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETY  310 (433)
T ss_pred             ecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEE
Confidence            67789999999984311                11112223578899999999999998764 8999998531 111   


Q ss_pred             e-eec---ceeeeec----CceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          63 K-YSH---DMKTFSW----KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        63 ~-~~~---~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      . |..   +...+.-    .--.-++|+-++.++ .+|       +..+.++++++
T Consensus       311 ~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v-~TG-------sy~n~frvf~~  358 (433)
T KOG1354|consen  311 PVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYV-MTG-------SYNNVFRVFNL  358 (433)
T ss_pred             eehHhHHHHHHHHhhccchhheeEEEEcCCcceE-ecc-------cccceEEEecC
Confidence            1 110   0000000    011235666666665 556       77888888873

>KOG4532|consensus

Probab=97.17  E-value=0.0072  Score=37.70  Aligned_cols=78  Identities=17%  Similarity=0.163  Sum_probs=48.0

Q ss_pred             ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee-eeecceeeeecCceeeEEEccCCC--EEEEeccccCCccccC
Q psy8803          26 HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV-KYSHDMKTFSWKYTQYSQFNESDT--LLLVSGVHFGTPQSTS  102 (111)
Q Consensus        26 ~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~  102 (111)
                      .+..-.+..|+.....+|.+.+|+++.|||++..... ....+-+...-+.+..+.|++.+.  .++.+        -.-
T Consensus       202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s--------Ehf  273 (344)
T KOG4532|consen  202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS--------EHF  273 (344)
T ss_pred             cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe--------cCc
Confidence            3455678899999999999999999999999874332 211111111223455666776332  33332        234


Q ss_pred             ceEEEeecC
Q psy8803         103 GEIAVFSLQ  111 (111)
Q Consensus       103 ~~i~iw~~~  111 (111)
                      +.+++.|+|
T Consensus       274 s~~hv~D~R  282 (344)
T KOG4532|consen  274 SRVHVVDTR  282 (344)
T ss_pred             ceEEEEEcc
Confidence            556776664

>KOG1334|consensus

Probab=97.10  E-value=0.00015  Score=47.89  Aligned_cols=57  Identities=11%  Similarity=-0.063  Sum_probs=51.6

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      +++..|+|-||+-.+++.+..+++-...|.|+.-+|---.||+++-|.-|+||-...
T Consensus       411 SGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  411 SGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             ecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence            567889999999999999998998878999999999999999999999999998743

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.07  E-value=0.026  Score=34.50  Aligned_cols=91  Identities=15%  Similarity=0.088  Sum_probs=54.9

Q ss_pred             CeeeecCCCCceeeeeeec-----ccccEEEEEEcCCCcEEEEEeCC--------CeEEEEecCCCceeeeecceeeeec
Q psy8803           7 EYKRLDYHTPIVETEVLTQ-----HTHQVLHVSFSHNGRYFATCSKD--------GYILVWTSSYPSKVKYSHDMKTFSW   73 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~-----~~~~v~~i~~s~~~~~l~s~~~d--------~~i~iw~~~~~~~~~~~~~~~~~~~   73 (111)
                      +.+.++|..+++.......     .......++++++|+++++....        +.+..++.. ......   ..  ..
T Consensus        60 ~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~---~~--~~  133 (246)
T PF08450_consen   60 GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV---AD--GL  133 (246)
T ss_dssp             TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE---EE--EE
T ss_pred             CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE---ec--Cc
Confidence            3445557777643333322     34567889999999988886543        345556555 332221   11  12


Q ss_pred             CceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          74 KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ...+.++|+|++..++++-       +..+.|..+++
T Consensus       134 ~~pNGi~~s~dg~~lyv~d-------s~~~~i~~~~~  163 (246)
T PF08450_consen  134 GFPNGIAFSPDGKTLYVAD-------SFNGRIWRFDL  163 (246)
T ss_dssp             SSEEEEEEETTSSEEEEEE-------TTTTEEEEEEE
T ss_pred             ccccceEECCcchheeecc-------cccceeEEEec
Confidence            4568899999999887765       56666776664

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4640|consensus

Probab=97.03  E-value=0.0036  Score=42.90  Aligned_cols=41  Identities=17%  Similarity=0.255  Sum_probs=33.3

Q ss_pred             eecccccEE-EEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803          23 LTQHTHQVL-HVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus        23 ~~~~~~~v~-~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      +.-|...+. +++|.|||++|+.|-.||+|++-|++.+....
T Consensus        57 ip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   57 IPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            333555566 99999999999999999999999998765443

>KOG1275|consensus

Probab=97.02  E-value=0.0017  Score=46.25  Aligned_cols=56  Identities=13%  Similarity=0.172  Sum_probs=46.4

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeC---------CCeEEEEecCCCc
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSK---------DGYILVWTSSYPS   60 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~---------d~~i~iw~~~~~~   60 (111)
                      +...|+|-+-|.++.+.++++..|++.|..+..  .|++|+++|.         |..++|||++.-+
T Consensus       193 G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr  257 (1118)
T KOG1275|consen  193 GDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR  257 (1118)
T ss_pred             ecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhh
Confidence            445789999999999999999999999988755  6999999875         4567899988643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.97  E-value=0.003  Score=40.13  Aligned_cols=77  Identities=18%  Similarity=0.330  Sum_probs=49.2

Q ss_pred             ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC-ceee--e--ecceeeeecCceeeEEEccCCCEEEEeccccCCccc
Q psy8803          26 HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP-SKVK--Y--SHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQS  100 (111)
Q Consensus        26 ~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~-~~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  100 (111)
                      |...+..+.|..|...++++. |-+|.+|+++-. ..+.  .  ...+..+. .-+++..|+|....++.-.       +
T Consensus       171 H~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLt-eVItSaeFhp~~cn~fmYS-------s  241 (460)
T COG5170         171 HPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELT-EVITSAEFHPEMCNVFMYS-------S  241 (460)
T ss_pred             ceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHH-HHHhhcccCHhHcceEEEe-------c
Confidence            666788899999998888876 678999998742 1111  0  00111111 1245667899666554433       6


Q ss_pred             cCceEEEeecC
Q psy8803         101 TSGEIAVFSLQ  111 (111)
Q Consensus       101 ~~~~i~iw~~~  111 (111)
                      ..|+|++-|||
T Consensus       242 SkG~Ikl~DlR  252 (460)
T COG5170         242 SKGEIKLNDLR  252 (460)
T ss_pred             CCCcEEehhhh
Confidence            78899999886

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.88  E-value=0.0056  Score=38.14  Aligned_cols=37  Identities=16%  Similarity=0.296  Sum_probs=32.7

Q ss_pred             ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee
Q psy8803          26 HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV   62 (111)
Q Consensus        26 ~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~   62 (111)
                      -...|..|..||||+.|++..-+|.|.+|++.+....
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence            4678999999999999999999999999999875443

>KOG1275|consensus

Probab=96.85  E-value=0.012  Score=42.21  Aligned_cols=89  Identities=16%  Similarity=0.161  Sum_probs=59.8

Q ss_pred             ecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeeecCceeeEEEccCCC
Q psy8803          11 LDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFSWKYTQYSQFNESDT   86 (111)
Q Consensus        11 iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~   86 (111)
                      ..|++..+......-..+.|.-|  ..+++.+.+|...|++.+-|.++.+..+    |+..+          .+|.-.++
T Consensus       161 ~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si----------SDfDv~GN  228 (1118)
T KOG1275|consen  161 HIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI----------SDFDVQGN  228 (1118)
T ss_pred             eeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccce----------eeeeccCC
Confidence            34566555444333223334444  3468999999999999999999876665    33333          35666899


Q ss_pred             EEEEeccccCC-ccccCceEEEeecC
Q psy8803          87 LLLVSGVHFGT-PQSTSGEIAVFSLQ  111 (111)
Q Consensus        87 ~~~~~~~~~~~-~~~~~~~i~iw~~~  111 (111)
                      .++++|...+. --..|..|+|||+|
T Consensus       229 lLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  229 LLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             eEEEeecccccccccccchhhhhhhh
Confidence            99998877554 22458889999986

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.84  E-value=0.0045  Score=39.37  Aligned_cols=100  Identities=12%  Similarity=0.054  Sum_probs=62.9

Q ss_pred             ccccCeeeecCCCCc---eeeeeeecc-----cccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCce-------ee-ee
Q psy8803           3 SWYEEYKRLDYHTPI---VETEVLTQH-----THQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSK-------VK-YS   65 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~---~~~~~~~~~-----~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~-------~~-~~   65 (111)
                      |..|-.|.+|++.--   -.+..++.|     +..|....|+|. ...+.-.+..|.|++-|++....       .. ..
T Consensus       189 SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~  268 (460)
T COG5170         189 SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTI  268 (460)
T ss_pred             eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhcc
Confidence            456777888988532   234444444     346778889996 56677777889999999984211       11 00


Q ss_pred             ccee----eeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          66 HDMK----TFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        66 ~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..+.    .-..+.+..+.|++.+.+++.         -.=.+++|||++
T Consensus       269 D~v~~~ff~eivsSISD~kFs~ngryIls---------RdyltvkiwDvn  309 (460)
T COG5170         269 DGVDVDFFEEIVSSISDFKFSDNGRYILS---------RDYLTVKIWDVN  309 (460)
T ss_pred             CcccchhHHHHhhhhcceEEcCCCcEEEE---------eccceEEEEecc
Confidence            0110    001123457899999988876         335669999975

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.81  E-value=0.029  Score=41.55  Aligned_cols=74  Identities=18%  Similarity=0.177  Sum_probs=51.2

Q ss_pred             EEEEEcC-CCcEEEEEeCCCeEEEEecCCCceeeeecc----------eeeeecCceeeEEEccCCCEEEEeccccCCcc
Q psy8803          31 LHVSFSH-NGRYFATCSKDGYILVWTSSYPSKVKYSHD----------MKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQ   99 (111)
Q Consensus        31 ~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   99 (111)
                      ..++++| ++.++++...++.|.+||..++........          ...........++++|++..++++.       
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD-------  758 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD-------  758 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE-------
Confidence            5789999 577888888889999999877543221100          0011123456799999988777776       


Q ss_pred             ccCceEEEeecC
Q psy8803         100 STSGEIAVFSLQ  111 (111)
Q Consensus       100 ~~~~~i~iw~~~  111 (111)
                      ..++.|++||++
T Consensus       759 s~n~~Irv~D~~  770 (1057)
T PLN02919        759 SESSSIRALDLK  770 (1057)
T ss_pred             CCCCeEEEEECC
Confidence            677889999863

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.75  E-value=0.068  Score=34.49  Aligned_cols=72  Identities=13%  Similarity=0.187  Sum_probs=50.1

Q ss_pred             EEEEEEcCCCcEEEEEeC-CCeEEEEecCCCceeeee-cceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEE
Q psy8803          30 VLHVSFSHNGRYFATCSK-DGYILVWTSSYPSKVKYS-HDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAV  107 (111)
Q Consensus        30 v~~i~~s~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~i  107 (111)
                      +-...+.|+++++++... -.+|.+|++..+...... ..+..  -...+.++|+|++....+..       --+++|.+
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~--G~GPRHi~FHpn~k~aY~v~-------EL~stV~v  217 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP--GAGPRHIVFHPNGKYAYLVN-------ELNSTVDV  217 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC--CCCcceEEEcCCCcEEEEEe-------ccCCEEEE
Confidence            778889999999888753 237899999876544321 12211  13467899999998776655       55777888


Q ss_pred             eec
Q psy8803         108 FSL  110 (111)
Q Consensus       108 w~~  110 (111)
                      |..
T Consensus       218 ~~y  220 (346)
T COG2706         218 LEY  220 (346)
T ss_pred             EEE
Confidence            864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.74  E-value=0.072  Score=34.43  Aligned_cols=99  Identities=10%  Similarity=0.099  Sum_probs=61.3

Q ss_pred             ccCeeeecCCCCc--e--eeeeeecccccEEEEEEcCCCcEEEEEe-CCCeEEEEecCCC-ceeeeeccee----e----
Q psy8803           5 YEEYKRLDYHTPI--V--ETEVLTQHTHQVLHVSFSHNGRYFATCS-KDGYILVWTSSYP-SKVKYSHDMK----T----   70 (111)
Q Consensus         5 ~d~~i~iw~~~~~--~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~~-~~~~~~~~~~----~----   70 (111)
                      .++.|..|.+...  +  .+............++++|++++|+.+. .++.+.++++... ........+.    .    
T Consensus        60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~  139 (345)
T PF10282_consen   60 DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD  139 (345)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTT
T ss_pred             CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccc
Confidence            4677777777653  2  3333332334556789999999888886 4789999999763 2222110010    0    


Q ss_pred             -eecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          71 -FSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        71 -~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                       -.......+.|+|++..++++.       -....|.++++
T Consensus       140 rq~~~h~H~v~~~pdg~~v~v~d-------lG~D~v~~~~~  173 (345)
T PF10282_consen  140 RQEGPHPHQVVFSPDGRFVYVPD-------LGADRVYVYDI  173 (345)
T ss_dssp             TTSSTCEEEEEE-TTSSEEEEEE-------TTTTEEEEEEE
T ss_pred             ccccccceeEEECCCCCEEEEEe-------cCCCEEEEEEE
Confidence             0112345789999999988875       34556888875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.73  E-value=0.045  Score=36.99  Aligned_cols=95  Identities=13%  Similarity=0.069  Sum_probs=59.7

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeC---CCeEEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSK---DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      +..+.++|++.+ ....  .....=..+.|+|.+++++.++=   .|.+-+|+..+...+.     ....-...+.+.|+
T Consensus       297 pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~-----~~~~~~n~s~~~ws  368 (561)
T COG5354         297 PASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVA-----GAFNGLNTSYCDWS  368 (561)
T ss_pred             ccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEE-----EEeecCCceEeecc
Confidence            334556666633 2222  23334467789999999888653   4678899887654332     11111233456789


Q ss_pred             cCCCEEEEeccccCCccccCceEEEeec
Q psy8803          83 ESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      |++..+.+..+....  -.|+.|.|||+
T Consensus       369 pd~qF~~~~~ts~k~--~~Dn~i~l~~v  394 (561)
T COG5354         369 PDGQFYDTDTTSEKL--RVDNSIKLWDV  394 (561)
T ss_pred             CCceEEEecCCCccc--ccCcceEEEEe
Confidence            999888776655554  56889999996

>KOG2314|consensus

Probab=96.72  E-value=0.008  Score=40.91  Aligned_cols=51  Identities=12%  Similarity=0.105  Sum_probs=39.0

Q ss_pred             CeeeecCCCCceeeeeeec--ccccE-EEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           7 EYKRLDYHTPIVETEVLTQ--HTHQV-LHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~--~~~~v-~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      .++.|||+.+|.....|..  ....+ .-..||.|+.++|....+ .|.|++...
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtps  335 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPS  335 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCc
Confidence            5699999999988777754  22223 346799999999998875 788998765

>KOG1832|consensus

Probab=96.64  E-value=0.0033  Score=45.14  Aligned_cols=69  Identities=16%  Similarity=0.106  Sum_probs=52.0

Q ss_pred             eeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEec
Q psy8803          20 TEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        20 ~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   92 (111)
                      ...|..|+....|++|+-+.++|+.|+..|.|+++++.++.-..+   ++|+. ++++.+.-+.++..++.+.
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s---~ncH~-SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES---VNCHQ-SAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc---ccccc-cccccccccCCcceeeeec
Confidence            445556788899999999999999999999999999998765542   34433 4555566666777776665

>KOG1645|consensus

Probab=96.61  E-value=0.01  Score=38.82  Aligned_cols=55  Identities=9%  Similarity=0.101  Sum_probs=46.9

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCC
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYP   59 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~   59 (111)
                      +-+.+|+|.|+++...+..+..+ ..++.++|+.| .+.|..|..+|-+.+||++..
T Consensus       213 sl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  213 SLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             ccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            45678999999998888888877 78999999997 567888889999999999864

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.60  E-value=0.016  Score=25.85  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=26.2

Q ss_pred             ccEEEEEEcCC-C--cEEEEEeCCCeEEEEecCC
Q psy8803          28 HQVLHVSFSHN-G--RYFATCSKDGYILVWTSSY   58 (111)
Q Consensus        28 ~~v~~i~~s~~-~--~~l~s~~~d~~i~iw~~~~   58 (111)
                      +.+.++.|+|+ +  .+|+-+-..+.+.++|++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46889999985 4  6888888889999999995

It contains a characteristic DLL sequence motif.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.58  E-value=0.086  Score=35.68  Aligned_cols=93  Identities=10%  Similarity=0.034  Sum_probs=60.5

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCC----eEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDG----YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      ..-+.+.|+.++....-=+...+.|....|+|++++||-+-.++    .|+++|+..++......+ ....+    +=+|
T Consensus       422 r~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta~Df----sPaF  496 (668)
T COG4946         422 RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDF----SPAF  496 (668)
T ss_pred             ceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-ccccc----Cccc
Confidence            34466677777765443344567899999999999999987765    589999998776542211 12222    2367


Q ss_pred             ccCCCEEEEeccccCCccccCce
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGE  104 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~  104 (111)
                      .|++.++.........+ +.|..
T Consensus       497 D~d~ryLYfLs~RsLdP-s~Drv  518 (668)
T COG4946         497 DPDGRYLYFLSARSLDP-SNDRV  518 (668)
T ss_pred             CCCCcEEEEEeccccCC-CCCee
Confidence            88888776655554443 34443

>KOG2079|consensus

Probab=96.57  E-value=0.0084  Score=43.63  Aligned_cols=61  Identities=18%  Similarity=0.135  Sum_probs=44.3

Q ss_pred             ccccCeeeecCCCCc-eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           3 SWYEEYKRLDYHTPI-VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      ++.-|++...|.+.+ .+.+.-+.-++.|.+++|+.+|..++.|-.+|-|.+||+......+
T Consensus       105 ~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~  166 (1206)
T KOG2079|consen  105 GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK  166 (1206)
T ss_pred             EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee
Confidence            445566666666643 1122223346899999999999999999999999999998755443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.46  E-value=0.035  Score=35.94  Aligned_cols=86  Identities=8%  Similarity=0.076  Sum_probs=53.7

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee--eec--ce-eeee-------
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK--YSH--DM-KTFS-------   72 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~--~~~--~~-~~~~-------   72 (111)
                      ..+...++|+.+++...-.. ....+....|||+|+.++-.. +..|.+.+.......+  ..+  .+ +...       
T Consensus        21 ~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE   98 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE   98 (353)
T ss_dssp             EEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred             cceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence            34667888998765443322 366788999999999998886 5689999887654333  111  00 0000       


Q ss_pred             -cCceeeEEEccCCCEEEEec
Q psy8803          73 -WKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        73 -~~~~~~v~~~~~~~~~~~~~   92 (111)
                       +.....+-|+|++.+|+..-
T Consensus        99 v~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   99 VFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             TSSSSBSEEE-TTSSEEEEEE
T ss_pred             ccccccceEECCCCCEEEEEE
Confidence             12235678999999988876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2314|consensus

Probab=96.46  E-value=0.017  Score=39.39  Aligned_cols=74  Identities=18%  Similarity=0.359  Sum_probs=47.1

Q ss_pred             EEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCC---ccccCceEEE
Q psy8803          31 LHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGT---PQSTSGEIAV  107 (111)
Q Consensus        31 ~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~i~i  107 (111)
                      .-+.|||.|.+|++-...| |.+|.=++....+      ......++.+.|+|...+|++-+...-.   .......+.|
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~------RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ------RFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHH------hccCCCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence            4678999999999988654 6788544322111      1111456778899999888664433111   0134578999


Q ss_pred             eecC
Q psy8803         108 FSLQ  111 (111)
Q Consensus       108 w~~~  111 (111)
                      ||++
T Consensus       287 WDI~  290 (698)
T KOG2314|consen  287 WDIA  290 (698)
T ss_pred             EEcc
Confidence            9985

>smart00320 WD40 WD40 repeats

Probab=96.29  E-value=0.01  Score=23.98  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=19.4

Q ss_pred             ceeeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      .+.++.|.+....+ +++       +.++.+++|+
T Consensus        14 ~i~~~~~~~~~~~~-~~~-------~~d~~~~~~~   40 (40)
T smart00320       14 PVTSVAFSPDGKYL-ASA-------SDDGTIKLWD   40 (40)
T ss_pred             ceeEEEECCCCCEE-EEe-------cCCCeEEEcC
Confidence            45567777777554 555       7799999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1832|consensus

Probab=96.25  E-value=0.0042  Score=44.66  Aligned_cols=57  Identities=18%  Similarity=0.066  Sum_probs=46.7

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCC--eEEEEecCC
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDG--YILVWTSSY   58 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~--~i~iw~~~~   58 (111)
                      +++..|-|+++++.+|........|++.|..+.-+-||.++++.+...  -..+|++..
T Consensus      1118 vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1118 VGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred             eeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence            567789999999999988888889999999999888998877765433  356888764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.21  E-value=0.023  Score=25.30  Aligned_cols=29  Identities=14%  Similarity=0.266  Sum_probs=19.9

Q ss_pred             eeeEEEccCCC--EEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNESDT--LLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +..++|+|+..  -+++..       -..+.|+|+|+|
T Consensus         3 vR~~kFsP~~~~~DLL~~~-------E~~g~vhi~D~R   33 (43)
T PF10313_consen    3 VRCCKFSPEPGGNDLLAWA-------EHQGRVHIVDTR   33 (43)
T ss_pred             eEEEEeCCCCCcccEEEEE-------ccCCeEEEEEcc
Confidence            45788997555  444544       456679999986

It contains a characteristic DLL sequence motif.

>KOG1912|consensus

Probab=96.14  E-value=0.051  Score=38.79  Aligned_cols=62  Identities=8%  Similarity=0.074  Sum_probs=49.7

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcC---CC-cEEEEEeCCCeEEEEecCCCcee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSH---NG-RYFATCSKDGYILVWTSSYPSKV   62 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~---~~-~~l~s~~~d~~i~iw~~~~~~~~   62 (111)
                      |++.-.|.|-+||...+..+..+..|.+.+..++|-+   +. ..|+.-....++-+|+..++..+
T Consensus        83 AsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~  148 (1062)
T KOG1912|consen   83 ASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF  148 (1062)
T ss_pred             EeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee
Confidence            4556679999999999988889999999999999977   34 45555566679999999887654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.02  E-value=0.19  Score=35.35  Aligned_cols=88  Identities=13%  Similarity=0.067  Sum_probs=54.8

Q ss_pred             ccCeeeecCCCCceeeeeee-cccccEEEEEEc--CCCcEEEEEeCCCeEEEEecC-C-----Cc--eeeeecceeeeec
Q psy8803           5 YEEYKRLDYHTPIVETEVLT-QHTHQVLHVSFS--HNGRYFATCSKDGYILVWTSS-Y-----PS--KVKYSHDMKTFSW   73 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~s--~~~~~l~s~~~d~~i~iw~~~-~-----~~--~~~~~~~~~~~~~   73 (111)
                      .-..+.|||.+.+.....-. ...+.|.++.|.  |+++.+++-|-...+.++--. .     ..  ..-..-.+.....
T Consensus        49 ~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~  128 (631)
T PF12234_consen   49 SRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTP  128 (631)
T ss_pred             CCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCC
Confidence            44579999999876443322 346789999984  478888888888888888542 1     00  0001112333333


Q ss_pred             CceeeEEEccCCCEEEEec
Q psy8803          74 KYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~   92 (111)
                      +++..+.|.+++..++++|
T Consensus       129 h~Igds~Wl~~G~LvV~sG  147 (631)
T PF12234_consen  129 HPIGDSIWLKDGTLVVGSG  147 (631)
T ss_pred             CCccceeEecCCeEEEEeC
Confidence            4566777887877666544

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.79  E-value=0.37  Score=33.87  Aligned_cols=29  Identities=10%  Similarity=0.226  Sum_probs=24.2

Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ...++++|++.++++++       ..+..|.|.|++
T Consensus       323 PHGV~vSPDGkylyVan-------klS~tVSVIDv~  351 (635)
T PRK02888        323 PHGVNTSPDGKYFIANG-------KLSPTVTVIDVR  351 (635)
T ss_pred             ccceEECCCCCEEEEeC-------CCCCcEEEEECh
Confidence            34689999999999988       778889998864

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.75  E-value=0.25  Score=33.00  Aligned_cols=42  Identities=19%  Similarity=0.136  Sum_probs=33.1

Q ss_pred             eeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee
Q psy8803          21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV   62 (111)
Q Consensus        21 ~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~   62 (111)
                      ..|......+..+..+|.+++.+....-|+|.++|+......
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv  342 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV  342 (415)
T ss_pred             EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh
Confidence            334445567889999999999999888899999999875433

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=95.73  E-value=0.14  Score=37.67  Aligned_cols=91  Identities=9%  Similarity=0.054  Sum_probs=55.5

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeC--C-CeEEEEecCCCcee-eeecceeeeecCceeeEEEc
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSK--D-GYILVWTSSYPSKV-KYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~--d-~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~   82 (111)
                      ..+|+|+-. |+....-+.-.+.-.+++|.|.|++||+.-.  + ..|.+|. +++..- ...-+. ...-..+..++|+
T Consensus       237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~-~~~~~~v~~l~Wn  313 (928)
T PF04762_consen  237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRF-DPEEEKVIELAWN  313 (928)
T ss_pred             eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCC-CCCCceeeEEEEC
Confidence            468999877 7776666655666678999999999999754  2 2343443 333222 111111 0011234567888


Q ss_pred             cCCCEEEEeccccCCccccCceEEEee
Q psy8803          83 ESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      +++..+++..         ...|.+|-
T Consensus       314 ~ds~iLAv~~---------~~~vqLWt  331 (928)
T PF04762_consen  314 SDSEILAVWL---------EDRVQLWT  331 (928)
T ss_pred             CCCCEEEEEe---------cCCceEEE
Confidence            8888887743         33388884

>KOG0882|consensus

Probab=95.73  E-value=0.01  Score=39.46  Aligned_cols=58  Identities=14%  Similarity=0.130  Sum_probs=48.5

Q ss_pred             cccccCeeeecCCCC--c-eeeeeeecccccEEEEEEcCCCcEEEEEeC-CCeEEEEecCCC
Q psy8803           2 KSWYEEYKRLDYHTP--I-VETEVLTQHTHQVLHVSFSHNGRYFATCSK-DGYILVWTSSYP   59 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~--~-~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~-d~~i~iw~~~~~   59 (111)
                      +.+.||+++.|--..  + +-+..+..|.+.+..++.+.++.++.+.+. |+.++++|+++.
T Consensus        25 qASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen   25 QASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             eeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            468899999998764  2 455566789999999999999999999777 999999999763

>KOG2041|consensus

Probab=95.72  E-value=0.069  Score=37.95  Aligned_cols=32  Identities=16%  Similarity=0.254  Sum_probs=28.4

Q ss_pred             cccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803          27 THQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus        27 ~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      .....|+.|..+..+|++|+.||.+++..+.+
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t   45 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGT   45 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccc
Confidence            45678999999999999999999999998765

>KOG1912|consensus

Probab=95.66  E-value=0.071  Score=38.09  Aligned_cols=52  Identities=12%  Similarity=0.098  Sum_probs=41.5

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCC------Cc------EEEEEeCCCeEEEEecCCC
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHN------GR------YFATCSKDGYILVWTSSYP   59 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~------~~------~l~s~~~d~~i~iw~~~~~   59 (111)
                      .|.+-|.++.+.+..++-|...|..+.|.|.      ..      .|+++...|.|.+||....
T Consensus        36 lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~   99 (1062)
T KOG1912|consen   36 LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA   99 (1062)
T ss_pred             eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence            3566677888888999999999999999873      11      5677778899999998764

>KOG2041|consensus

Probab=95.60  E-value=0.044  Score=38.87  Aligned_cols=58  Identities=17%  Similarity=0.217  Sum_probs=45.1

Q ss_pred             cccccCeeeecCCCCc---------------eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q psy8803           2 KSWYEEYKRLDYHTPI---------------VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP   59 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~---------------~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~   59 (111)
                      .++-||.+++..+.+.               ..-.+++||...|.-+.|....+.|-+...+|.|.+|-+..+
T Consensus        31 cgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg  103 (1189)
T KOG2041|consen   31 CGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG  103 (1189)
T ss_pred             eccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc
Confidence            4556777777665421               224467899999999999999999999999999999988654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=95.58  E-value=0.41  Score=32.06  Aligned_cols=80  Identities=9%  Similarity=0.069  Sum_probs=45.2

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEE-EEeCC--CeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFA-TCSKD--GYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..|.++|+.+++... +....+......|+|||+.++ +.+.+  ..|.++++..+....-.. ....    ...-.|+|
T Consensus       213 ~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~-~~~~----d~~p~~SP  286 (419)
T PRK04043        213 PTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITN-YPGI----DVNGNFVE  286 (419)
T ss_pred             CEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEccc-CCCc----cCccEECC
Confidence            456777776665433 222445556678999987554 44434  457777776654332110 0100    11236899


Q ss_pred             CCCEEEEec
Q psy8803          84 SDTLLLVSG   92 (111)
Q Consensus        84 ~~~~~~~~~   92 (111)
                      ++..++.+.
T Consensus       287 DG~~I~F~S  295 (419)
T PRK04043        287 DDKRIVFVS  295 (419)
T ss_pred             CCCEEEEEE
Confidence            998887765

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.45  E-value=0.37  Score=33.90  Aligned_cols=97  Identities=9%  Similarity=-0.018  Sum_probs=58.6

Q ss_pred             cCeeeecCCCC----ceeeeeeecccccEEEEEEcCCCcEEEEEe-CCCeEEEEecCCCce-e----eeec-ceeeeec-
Q psy8803           6 EEYKRLDYHTP----IVETEVLTQHTHQVLHVSFSHNGRYFATCS-KDGYILVWTSSYPSK-V----KYSH-DMKTFSW-   73 (111)
Q Consensus         6 d~~i~iw~~~~----~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~~~~-~----~~~~-~~~~~~~-   73 (111)
                      +++|.+.|..+    +..+...-.-......+.++|||++++.++ .+..+.+.|+..... +    .... -+..... 
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG  374 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG  374 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence            35688888876    322222222345667899999998766654 588999999986432 0    0000 0011110 


Q ss_pred             CceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          74 KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ......+|.+++. ..++-       .-|+.|..||+
T Consensus       375 lGPLHTaFDg~G~-aytsl-------f~dsqv~kwn~  403 (635)
T PRK02888        375 LGPLHTAFDGRGN-AYTTL-------FLDSQIVKWNI  403 (635)
T ss_pred             CCcceEEECCCCC-EEEeE-------eecceeEEEeh
Confidence            1234678888875 44554       66888999996

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=95.42  E-value=0.056  Score=33.88  Aligned_cols=30  Identities=20%  Similarity=0.173  Sum_probs=26.8

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803          29 QVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus        29 ~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      .=+.++||||+.+||.+...|+|+++|+..
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g   74 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG   74 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence            446799999999999999999999999864

>KOG3617|consensus

Probab=95.27  E-value=0.07  Score=38.67  Aligned_cols=56  Identities=16%  Similarity=0.372  Sum_probs=46.7

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecC
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSS   57 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~   57 (111)
                      .++--|-+.+|.....+.-..-..|...+..+.|||+|..++++..-|.+.+|...
T Consensus        76 ~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   76 QGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            44556778888887666555556799999999999999999999999999999875

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.24  E-value=0.27  Score=32.19  Aligned_cols=57  Identities=7%  Similarity=0.100  Sum_probs=45.6

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCc-EEEEEe-CCCeEEEEecCCCceeee
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR-YFATCS-KDGYILVWTSSYPSKVKY   64 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~-~d~~i~iw~~~~~~~~~~   64 (111)
                      ++|.++|..+++.+..+. -...+..+.++||++ +|.... .++.+.++|..+.+....
T Consensus       279 ~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       279 RFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS  337 (352)
T ss_pred             CEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence            478899999888888776 245889999999988 766655 577899999998876663

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2444|consensus

Probab=95.23  E-value=0.083  Score=32.26  Aligned_cols=61  Identities=5%  Similarity=-0.123  Sum_probs=34.3

Q ss_pred             ccccCeeeecCCCCc-eeeeeeecccccEEEEEE-cCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           3 SWYEEYKRLDYHTPI-VETEVLTQHTHQVLHVSF-SHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~i~~-s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      +..||.|.+|+.... ...-....-...+-++-- -.++.+..+++.++.|+.|++...+...
T Consensus        76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g  138 (238)
T KOG2444|consen   76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLG  138 (238)
T ss_pred             ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceee
Confidence            456777777777621 111111111122233211 2235577888899999999998776655

>KOG1008|consensus

Probab=95.12  E-value=0.0051  Score=42.46  Aligned_cols=102  Identities=16%  Similarity=0.130  Sum_probs=59.7

Q ss_pred             cccccCeeeecCCCCcee--eeeeecccccEEEEEEcC-CCcEEEEEe----CCCeEEEEecCCCceee-eecceeeeec
Q psy8803           2 KSWYEEYKRLDYHTPIVE--TEVLTQHTHQVLHVSFSH-NGRYFATCS----KDGYILVWTSSYPSKVK-YSHDMKTFSW   73 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~i~~s~-~~~~l~s~~----~d~~i~iw~~~~~~~~~-~~~~~~~~~~   73 (111)
                      ++..+|.|-+-..+...-  -....+|...+.+++|.+ |.++||.|-    .|..++|||+...-... ..........
T Consensus        75 vG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l  154 (783)
T KOG1008|consen   75 VGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTL  154 (783)
T ss_pred             hccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccc
Confidence            455567777766653311  122346778899999988 567787773    25679999998752211 1001111111


Q ss_pred             CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          74 KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ...+.+++- .+..++.+|       ...+.++++|+|
T Consensus       155 ~gqns~cwl-rd~klvlaG-------m~sr~~~ifdlR  184 (783)
T KOG1008|consen  155 DGQNSVCWL-RDTKLVLAG-------MTSRSVHIFDLR  184 (783)
T ss_pred             cCccccccc-cCcchhhcc-------cccchhhhhhhh
Confidence            233455666 444555666       667788888875

>KOG4640|consensus

Probab=95.11  E-value=0.18  Score=35.09  Aligned_cols=72  Identities=13%  Similarity=0.212  Sum_probs=49.7

Q ss_pred             cccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCce-eeEEEccCCCEEEEeccccCCccccCceE
Q psy8803          27 THQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYT-QYSQFNESDTLLLVSGVHFGTPQSTSGEI  105 (111)
Q Consensus        27 ~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~i  105 (111)
                      ...+..+.|+|.-.+||.+..++.+.+..+...+.--.  +++.   .++ .+.+|.|++..+ +.|       -.||+|
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwti--p~p~---~~v~~sL~W~~DGkll-aVg-------~kdG~I   86 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTI--PIPG---ENVTASLCWRPDGKLL-AVG-------FKDGTI   86 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEeccceeEec--cCCC---CccceeeeecCCCCEE-EEE-------ecCCeE
Confidence            45788999999999999999999888887763221110  0110   112 367788897666 445       678999


Q ss_pred             EEeecC
Q psy8803         106 AVFSLQ  111 (111)
Q Consensus       106 ~iw~~~  111 (111)
                      ++.|++
T Consensus        87 ~L~Dve   92 (665)
T KOG4640|consen   87 RLHDVE   92 (665)
T ss_pred             EEEEcc
Confidence            999864

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.11  E-value=0.34  Score=32.70  Aligned_cols=50  Identities=16%  Similarity=0.118  Sum_probs=33.2

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecC
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSS   57 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~   57 (111)
                      .++.|.+||..+++.+..+.-.  .|..+.|++++.+++-.+.+ .+.+.+..
T Consensus       124 ~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  124 SSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             ETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred             CCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence            3457999999999999888633  48999999999999998865 66666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=94.96  E-value=0.42  Score=32.64  Aligned_cols=89  Identities=16%  Similarity=0.128  Sum_probs=53.2

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe--CCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCC
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS--KDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESD   85 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   85 (111)
                      .+.|++++... +.....-.+.|...+|.|+++-++..+  .+..+.++|++.......    ..   .+-+++-|+|..
T Consensus       256 nLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~----Pe---~~rNT~~fsp~~  327 (561)
T COG5354         256 NLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYF----PE---QKRNTIFFSPHE  327 (561)
T ss_pred             eEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccceEEec----CC---cccccccccCcc
Confidence            34555555222 222224578899999999877666554  677899999987643321    00   123356677888


Q ss_pred             CEEEEeccccCCccccCceEEEee
Q psy8803          86 TLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      .+++..|.+-..     +.|.|||
T Consensus       328 r~il~agF~nl~-----gni~i~~  346 (561)
T COG5354         328 RYILFAGFDNLQ-----GNIEIFD  346 (561)
T ss_pred             cEEEEecCCccc-----cceEEec
Confidence            887776644322     3366665

>KOG2066|consensus

Probab=94.86  E-value=0.23  Score=35.51  Aligned_cols=53  Identities=6%  Similarity=0.041  Sum_probs=40.1

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCC-----CcEEEEEeCCCeEEEEe
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-----GRYFATCSKDGYILVWT   55 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-----~~~l~s~~~d~~i~iw~   55 (111)
                      |+.+.||+|.|-...+......+. ....+..++++|+     .+.+++||..| +.++.
T Consensus        87 asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e  144 (846)
T KOG2066|consen   87 ASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE  144 (846)
T ss_pred             EEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence            467889999998887776655554 3458899999997     46899999877 65554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.82  E-value=0.055  Score=38.81  Aligned_cols=55  Identities=13%  Similarity=0.177  Sum_probs=42.9

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEec
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTS   56 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~   56 (111)
                      |+++.+|-||+||-........|.+-..+|..|..+.||++++..+. ..|.+++.
T Consensus       592 avgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  592 AVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             EEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            56889999999996544444555667789999999999999888775 46667765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3621|consensus

Probab=94.77  E-value=0.16  Score=35.77  Aligned_cols=89  Identities=12%  Similarity=-0.073  Sum_probs=54.5

Q ss_pred             ccccCeeeecCCCCcee-eeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee--eecceeeeecCceeeE
Q psy8803           3 SWYEEYKRLDYHTPIVE-TEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK--YSHDMKTFSWKYTQYS   79 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~-~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~v   79 (111)
                      +..-|.+.+|+-..++. +.+.++-.+.+..+..+++..+.|.|+..+.+.++.+.......  +....-...-..++++
T Consensus        51 GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal  130 (726)
T KOG3621|consen   51 GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTAL  130 (726)
T ss_pred             ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEE
Confidence            45567777777765543 33334455666677789999999999999999999886532111  1000000001245667


Q ss_pred             EEccCCCEEEEec
Q psy8803          80 QFNESDTLLLVSG   92 (111)
Q Consensus        80 ~~~~~~~~~~~~~   92 (111)
                      +|++++..+ .+|
T Consensus       131 ~Ws~~~~k~-ysG  142 (726)
T KOG3621|consen  131 EWSKNGMKL-YSG  142 (726)
T ss_pred             EecccccEE-eec
Confidence            778888776 555

>KOG1008|consensus

Probab=94.56  E-value=0.012  Score=40.76  Aligned_cols=91  Identities=12%  Similarity=0.168  Sum_probs=54.9

Q ss_pred             ccCeeeecCCCCc--eeee--eeec-ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           5 YEEYKRLDYHTPI--VETE--VLTQ-HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         5 ~d~~i~iw~~~~~--~~~~--~~~~-~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      .|..+.|||+.++  .+..  .|.+ .......++|-.+.+++++|...+.++++|++.......  .+..   ..++.+
T Consensus       127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~--svnT---k~vqG~  201 (783)
T KOG1008|consen  127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS--SVNT---KYVQGI  201 (783)
T ss_pred             ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh--hhhh---hhcccc
Confidence            4667999999876  2221  2222 333445778888888999998888999999984221110  1111   122233


Q ss_pred             EEcc-CCCEEEEeccccCCccccCceEEEee
Q psy8803          80 QFNE-SDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        80 ~~~~-~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      .-.| ...+++.         ..++.|.+||
T Consensus       202 tVdp~~~nY~cs---------~~dg~iAiwD  223 (783)
T KOG1008|consen  202 TVDPFSPNYFCS---------NSDGDIAIWD  223 (783)
T ss_pred             eecCCCCCceec---------cccCceeecc
Confidence            3344 4445544         4589999999

>KOG2066|consensus

Probab=94.46  E-value=0.46  Score=34.16  Aligned_cols=50  Identities=22%  Similarity=0.438  Sum_probs=32.6

Q ss_pred             CCCcEEEEEeCCCeEEEEecCCCceee-eecceeeeecCceeeEEEccC----CCEEEEec
Q psy8803          37 HNGRYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFSWKYTQYSQFNES----DTLLLVSG   92 (111)
Q Consensus        37 ~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~   92 (111)
                      .+|.++++|+.||++.|..+.+..... +.-.      .|+..|+++|+    ....+++|
T Consensus        81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~------rpiksial~Pd~~~~~sk~fv~G  135 (846)
T KOG2066|consen   81 LEGEYVASCSDDGKVVIGSLFTDDEITQYDFK------RPIKSIALHPDFSRQQSKQFVSG  135 (846)
T ss_pred             cCCceEEEecCCCcEEEeeccCCccceeEecC------CcceeEEeccchhhhhhhheeec
Confidence            359999999999999999887654332 2111      24556677776    33445555

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.20  E-value=0.22  Score=22.63  Aligned_cols=28  Identities=21%  Similarity=0.439  Sum_probs=21.2

Q ss_pred             ceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .++.++|+|....++. +       ..+|.|.++.+
T Consensus        13 ~v~~~~w~P~mdLiA~-~-------t~~g~v~v~Rl   40 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIAL-G-------TEDGEVLVYRL   40 (47)
T ss_pred             cEEEEEECCCCCEEEE-E-------ECCCeEEEEEC
Confidence            4567888998877654 4       67899999875

>KOG3617|consensus

Probab=94.14  E-value=0.092  Score=38.11  Aligned_cols=70  Identities=10%  Similarity=0.052  Sum_probs=48.3

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEe
Q psy8803          29 QVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVF  108 (111)
Q Consensus        29 ~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw  108 (111)
                      .+..++|+|..-.|+.+=+-+.+.+|.....+.-    .+....-.+++.+.|++++..+ .++       ..-|.+..|
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h----tv~~th~a~i~~l~wS~~G~~l-~t~-------d~~g~v~lw  128 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH----TVVETHPAPIQGLDWSHDGTVL-MTL-------DNPGSVHLW  128 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCceee----eeccCCCCCceeEEecCCCCeE-EEc-------CCCceeEEE
Confidence            3456899998888888888888999977653321    1222222567778889898876 444       556678888


Q ss_pred             ec
Q psy8803         109 SL  110 (111)
Q Consensus       109 ~~  110 (111)
                      ..
T Consensus       129 r~  130 (1416)
T KOG3617|consen  129 RY  130 (1416)
T ss_pred             Ee
Confidence            64

>KOG4649|consensus

Probab=93.99  E-value=0.95  Score=28.68  Aligned_cols=61  Identities=11%  Similarity=-0.036  Sum_probs=46.7

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEE-EEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVL-HVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~-~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      .+.+.|.+.+.+..+|+.+.++..-. .|. .....+++.+|-+++.|+..+..|.+...+..
T Consensus        68 ~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy  129 (354)
T KOG4649|consen   68 LGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY  129 (354)
T ss_pred             EEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence            35678888888889998887776433 333 33457889999999999999999998765554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.95  E-value=1  Score=28.95  Aligned_cols=97  Identities=12%  Similarity=0.144  Sum_probs=58.5

Q ss_pred             cCeeeecCCCCceeeee--e--ecccccEEEEEEcCCCcEEEEEeCCC-------eEEEEecCCC-ceeeeecce-eeee
Q psy8803           6 EEYKRLDYHTPIVETEV--L--TQHTHQVLHVSFSHNGRYFATCSKDG-------YILVWTSSYP-SKVKYSHDM-KTFS   72 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~--~--~~~~~~v~~i~~s~~~~~l~s~~~d~-------~i~iw~~~~~-~~~~~~~~~-~~~~   72 (111)
                      +..+.+-|..+|+.+..  +  .-|.-.+..+++.++|..++..-..+       .+.+++.... ..+...... ..+.
T Consensus       137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~  216 (305)
T PF07433_consen  137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLN  216 (305)
T ss_pred             CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhC
Confidence            44555667777876665  4  23777899999999988766553222       1222222211 111100011 1111


Q ss_pred             cCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          73 WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                       .++=+|++++++..+++++       ...+.+.+||.
T Consensus       217 -~Y~gSIa~~~~g~~ia~ts-------PrGg~~~~~d~  246 (305)
T PF07433_consen  217 -GYIGSIAADRDGRLIAVTS-------PRGGRVAVWDA  246 (305)
T ss_pred             -CceEEEEEeCCCCEEEEEC-------CCCCEEEEEEC
Confidence             3556889999999998888       88899999985

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.93  E-value=0.84  Score=27.83  Aligned_cols=29  Identities=24%  Similarity=0.508  Sum_probs=23.1

Q ss_pred             EcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803          35 FSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus        35 ~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      +...++++++-..+|.+++||+...+...
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~   46 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVL   46 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence            34568888888899999999999865543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2444|consensus

Probab=93.82  E-value=0.078  Score=32.38  Aligned_cols=57  Identities=12%  Similarity=0.078  Sum_probs=36.5

Q ss_pred             cccccCeeeecCCCCceeeeeeeccc-ccEEEEEEcCCCcEEEEE--eCCCeEEEEecCC
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHT-HQVLHVSFSHNGRYFATC--SKDGYILVWTSSY   58 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~s~--~~d~~i~iw~~~~   58 (111)
                      ++.+||-|+.|++.+++.+-....|+ ..+.....+..+..++.+  |.|..++.|++..
T Consensus       119 ~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  119 VGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             EeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            56789999999999888766666666 333333333344555555  6666666676654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=93.70  E-value=1.1  Score=28.47  Aligned_cols=56  Identities=5%  Similarity=-0.097  Sum_probs=40.0

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe------CCCeEEEEecCCC
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS------KDGYILVWTSSYP   59 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~------~d~~i~iw~~~~~   59 (111)
                      .....+++||+...+=..--.+-++.|..+.|..+.++++.|.      ....+..||....
T Consensus        13 L~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~   74 (281)
T PF12768_consen   13 LPCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ   74 (281)
T ss_pred             cCCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence            3567899999886543322234568999999997788888874      3556888888764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=93.49  E-value=1.4  Score=28.83  Aligned_cols=58  Identities=12%  Similarity=-0.050  Sum_probs=36.6

Q ss_pred             cccCeeeecCCCCceeeeeeeccccc-EEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQ-VLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~-v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      ..||.+..+|..+++.+......... ......  .+..+..++.++.+.++|..+++...
T Consensus       286 ~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~  344 (377)
T TIGR03300       286 DADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA  344 (377)
T ss_pred             CCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            45778888888777765444221111 111111  36678888899999999998876553

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=93.22  E-value=0.69  Score=33.59  Aligned_cols=84  Identities=8%  Similarity=-0.025  Sum_probs=51.2

Q ss_pred             cccCeeeecCCCCc-eeeeeeec----ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           4 WYEEYKRLDYHTPI-VETEVLTQ----HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         4 ~~d~~i~iw~~~~~-~~~~~~~~----~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      -.+..+..||.+-. ..+..-..    ......|++-.. .-+||.|+.+|.|++||--. ...+  ..++.+. .|+..
T Consensus       549 ls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~-~G~iavgs~~G~IRLyd~~g-~~AK--T~lp~lG-~pI~~  623 (794)
T PF08553_consen  549 LSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE-DGYIAVGSNKGDIRLYDRLG-KRAK--TALPGLG-DPIIG  623 (794)
T ss_pred             ECCCceEEeccCCCCCceeeccccccccCCCceEEEecC-CceEEEEeCCCcEEeecccc-hhhh--hcCCCCC-CCeeE
Confidence            35667778888742 22221111    234555655444 44688899999999998432 2111  1233333 67888


Q ss_pred             EEEccCCCEEEEec
Q psy8803          79 SQFNESDTLLLVSG   92 (111)
Q Consensus        79 v~~~~~~~~~~~~~   92 (111)
                      |.-+.++.++++++
T Consensus       624 iDvt~DGkwilaTc  637 (794)
T PF08553_consen  624 IDVTADGKWILATC  637 (794)
T ss_pred             EEecCCCcEEEEee
Confidence            88888999998876

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK04043 tolB translocation protein TolB; Provisional

Probab=93.20  E-value=1.7  Score=29.17  Aligned_cols=72  Identities=11%  Similarity=0.101  Sum_probs=42.1

Q ss_pred             cEEEEEEcCCCcE-EEEEe-C--CCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCce
Q psy8803          29 QVLHVSFSHNGRY-FATCS-K--DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGE  104 (111)
Q Consensus        29 ~v~~i~~s~~~~~-l~s~~-~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  104 (111)
                      ....-.|+|||+. ++-.+ .  ...|.++|+.+++...-.. ..    .......|+|++..++.+...     ..+..
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~----g~~~~~~~SPDG~~la~~~~~-----~g~~~  258 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQ----GMLVVSDVSKDGSKLLLTMAP-----KGQPD  258 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CC----CcEEeeEECCCCCEEEEEEcc-----CCCcE
Confidence            6778899999873 55433 2  3568888887765443111 00    112235689999888776522     12345


Q ss_pred             EEEeec
Q psy8803         105 IAVFSL  110 (111)
Q Consensus       105 i~iw~~  110 (111)
                      |.++|+
T Consensus       259 Iy~~dl  264 (419)
T PRK04043        259 IYLYDT  264 (419)
T ss_pred             EEEEEC
Confidence            666554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=92.96  E-value=2.9  Score=31.22  Aligned_cols=61  Identities=7%  Similarity=0.111  Sum_probs=42.5

Q ss_pred             cccEEEEEEcCCCcEEEEEeCCCeEEEE----ecCCCceeeeecceeeeecCceeeEEEccCCCEEEEec
Q psy8803          27 THQVLHVSFSHNGRYFATCSKDGYILVW----TSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        27 ~~~v~~i~~s~~~~~l~s~~~d~~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   92 (111)
                      .+.|..+.+-++...++.+..+|.|.+.    +.......    .+-.+. ..+.+++|+|++..++...
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E----~VG~vd-~GI~a~~WSPD~Ella~vT  139 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE----IVGSVD-SGILAASWSPDEELLALVT  139 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE----EEEEEc-CcEEEEEECCCcCEEEEEe
Confidence            4678899999999888888889999888    44433222    122222 4567788899988776654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=92.78  E-value=1.1  Score=30.19  Aligned_cols=77  Identities=13%  Similarity=0.095  Sum_probs=42.4

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEE-EeCCCe--EEEEecCCCceee--eecceeeeecCceeeEEEc
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFAT-CSKDGY--ILVWTSSYPSKVK--YSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~~~d~~--i~iw~~~~~~~~~--~~~~~~~~~~~~~~~v~~~   82 (111)
                      .+.++++.+++....+. ..+.-..-.|+|||+.|+- ...|+.  |.+.|+.......  +...+..       .=.|+
T Consensus       219 ~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~-------~Ps~s  290 (425)
T COG0823         219 RIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINT-------SPSWS  290 (425)
T ss_pred             eEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCcccc-------CccCC
Confidence            46667777664333332 2334456789999876544 456665  4555555544222  1111111       12478


Q ss_pred             cCCCEEEEec
Q psy8803          83 ESDTLLLVSG   92 (111)
Q Consensus        83 ~~~~~~~~~~   92 (111)
                      |++..++...
T Consensus       291 pdG~~ivf~S  300 (425)
T COG0823         291 PDGSKIVFTS  300 (425)
T ss_pred             CCCCEEEEEe
Confidence            8999887776

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.66  E-value=1.8  Score=27.91  Aligned_cols=75  Identities=16%  Similarity=0.192  Sum_probs=49.1

Q ss_pred             EEEEcC-CCcEEEEEeCCC-eEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          32 HVSFSH-NGRYFATCSKDG-YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        32 ~i~~s~-~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      .++.+| +...++.+-..+ ...+||.+++............  ...=.-.|++++..++++-.++..   ..|.|-|||
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd~~~---g~G~IgVyd   83 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTENDYET---GRGVIGVYD   83 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccccCC---CcEEEEEEE
Confidence            466788 456666676665 4779999887665421111111  111256899999999888766644   578899999


Q ss_pred             cC
Q psy8803         110 LQ  111 (111)
Q Consensus       110 ~~  111 (111)
                      .+
T Consensus        84 ~~   85 (305)
T PF07433_consen   84 AA   85 (305)
T ss_pred             Cc
Confidence            64

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=92.32  E-value=1.5  Score=26.33  Aligned_cols=57  Identities=9%  Similarity=-0.109  Sum_probs=37.8

Q ss_pred             ccCeeeecCCCCceeeeeeecc--cccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQH--THQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV   62 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~--~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~   62 (111)
                      .+|+|..+|..+++.+-...--  .....+. ..+++..++.++.++.+..+|..+++..
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~   59 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVL   59 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEE
Confidence            3789999999999887766421  1111211 2324556666678999999999887654

...

>KOG2114|consensus

Probab=92.31  E-value=3.1  Score=30.59  Aligned_cols=80  Identities=4%  Similarity=-0.036  Sum_probs=47.9

Q ss_pred             eeeecCCCCc---e---ee--eeeec-----ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecC
Q psy8803           8 YKRLDYHTPI---V---ET--EVLTQ-----HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWK   74 (111)
Q Consensus         8 ~i~iw~~~~~---~---~~--~~~~~-----~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~   74 (111)
                      .+++|++...   .   ++  +.+.+     ...++..++.+.+-+.+|+|-.||.|..+.=.-.+............-.
T Consensus        93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~  172 (933)
T KOG2114|consen   93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKE  172 (933)
T ss_pred             EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCC
Confidence            7999999743   1   22  12222     2467888999999999999999999988742211100000011111124


Q ss_pred             ceeeEEEccCCCE
Q psy8803          75 YTQYSQFNESDTL   87 (111)
Q Consensus        75 ~~~~v~~~~~~~~   87 (111)
                      |++.+++..++..
T Consensus       173 pITgL~~~~d~~s  185 (933)
T KOG2114|consen  173 PITGLALRSDGKS  185 (933)
T ss_pred             CceeeEEecCCce
Confidence            6777877777765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=92.25  E-value=1.3  Score=28.93  Aligned_cols=55  Identities=7%  Similarity=-0.104  Sum_probs=35.2

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV   62 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~   62 (111)
                      ..+|.+..+|..+++.+-.... . ....  ...++..+..++.++.+..+|..+++..
T Consensus       248 ~~~g~l~a~d~~tG~~~W~~~~-~-~~~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~  302 (377)
T TIGR03300       248 SYQGRVAALDLRSGRVLWKRDA-S-SYQG--PAVDDNRLYVTDADGVVVALDRRSGSEL  302 (377)
T ss_pred             EcCCEEEEEECCCCcEEEeecc-C-CccC--ceEeCCEEEEECCCCeEEEEECCCCcEE
Confidence            4577888888888876554431 1 1111  1124566667778899999999876543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=92.04  E-value=1.2  Score=24.30  Aligned_cols=18  Identities=22%  Similarity=0.108  Sum_probs=13.3

Q ss_pred             cEEEEEeCCCeEEEEecC
Q psy8803          40 RYFATCSKDGYILVWTSS   57 (111)
Q Consensus        40 ~~l~s~~~d~~i~iw~~~   57 (111)
                      +.|+.|++|..|++|+-.
T Consensus        16 ~eLlvGs~D~~IRvf~~~   33 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD   33 (111)
T ss_pred             ceEEEecCCcEEEEEeCC
Confidence            467778888888888544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=92.02  E-value=2.3  Score=27.79  Aligned_cols=96  Identities=10%  Similarity=0.096  Sum_probs=58.5

Q ss_pred             cCeeeecCCCCce---eeeeeecccccEEEEEEcCCCcEEEEEeC---CCeEEEEecCC--CceeeeecceeeeecCcee
Q psy8803           6 EEYKRLDYHTPIV---ETEVLTQHTHQVLHVSFSHNGRYFATCSK---DGYILVWTSSY--PSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         6 d~~i~iw~~~~~~---~~~~~~~~~~~v~~i~~s~~~~~l~s~~~---d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~   77 (111)
                      +..|.+|++.+..   ....+-...+...-++|+|+++.|.++..   .+.+.-|.+..  +....-.. .. ..-++..
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~-~~-~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR-QT-LPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-cc-cCCCCCe
Confidence            4668888887331   11222346678899999999987777643   57788777764  44332111 11 1124457


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .++.++++..++++.       =..+.|.++-+
T Consensus        93 yvsvd~~g~~vf~An-------Y~~g~v~v~p~  118 (346)
T COG2706          93 YVSVDEDGRFVFVAN-------YHSGSVSVYPL  118 (346)
T ss_pred             EEEECCCCCEEEEEE-------ccCceEEEEEc
Confidence            889999998887765       22345666543

>KOG2395|consensus

Probab=92.00  E-value=1.6  Score=30.40  Aligned_cols=85  Identities=8%  Similarity=0.032  Sum_probs=45.6

Q ss_pred             ccccCeeeecCCC-Cce-eeeeeeccc----ccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCce
Q psy8803           3 SWYEEYKRLDYHT-PIV-ETEVLTQHT----HQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYT   76 (111)
Q Consensus         3 ~~~d~~i~iw~~~-~~~-~~~~~~~~~----~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~   76 (111)
                      +..|..|.=||.+ .++ .+..-++|+    ....|.+-- ..-+|+.|+.+|.|++||--. ...+.  ..+.+. .++
T Consensus       400 GLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~-~~AKT--AlPgLG-~~I  474 (644)
T KOG2395|consen  400 GLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIG-RRAKT--ALPGLG-DAI  474 (644)
T ss_pred             eecCCceEEecccccCcceeeeeeccccccccccceeeec-CCceEEEeecCCcEEeehhhh-hhhhh--cccccC-Cce
Confidence            4566777777876 222 122222332    222333222 345789999999999998632 11110  122221 345


Q ss_pred             eeEEEccCCCEEEEec
Q psy8803          77 QYSQFNESDTLLLVSG   92 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~   92 (111)
                      ..|.-+.++..+++++
T Consensus       475 ~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  475 KHVDVTADGKWILATC  490 (644)
T ss_pred             eeEEeeccCcEEEEec
Confidence            5565566777777765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.90  E-value=2.2  Score=28.97  Aligned_cols=47  Identities=13%  Similarity=0.257  Sum_probs=28.1

Q ss_pred             CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEec
Q psy8803          39 GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        39 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   92 (111)
                      |.+|+..+.+ .+.+||+.+......      +...++..|.|++++.+++..+
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~------i~v~~vk~V~Ws~~g~~val~t  163 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRR------IDVSAVKYVIWSDDGELVALVT  163 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEE------ESS-E-EEEEE-TTSSEEEEE-
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeE------EecCCCcEEEEECCCCEEEEEe
Confidence            8877777654 899999998766542      1223345677788888887754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.19  E-value=1  Score=31.11  Aligned_cols=34  Identities=15%  Similarity=0.292  Sum_probs=25.6

Q ss_pred             cEEEEEEcC----CCcEEEEEeCCCeEEEEecCCCcee
Q psy8803          29 QVLHVSFSH----NGRYFATCSKDGYILVWTSSYPSKV   62 (111)
Q Consensus        29 ~v~~i~~s~----~~~~l~s~~~d~~i~iw~~~~~~~~   62 (111)
                      .+..+..+.    +..++++-+.|+++++||+.+..+.
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~  253 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCL  253 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence            445556665    6788999999999999999988763

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1920|consensus

Probab=91.07  E-value=5.7  Score=30.43  Aligned_cols=50  Identities=12%  Similarity=0.027  Sum_probs=31.8

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEec
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTS   56 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~   56 (111)
                      +|.|-+-|..+.... ...--...|.+++|+||+++++-.....++.+..-
T Consensus        89 ~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~  138 (1265)
T KOG1920|consen   89 LGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTK  138 (1265)
T ss_pred             CCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec
Confidence            445555454433221 11224578999999999999888877777766543

>KOG2079|consensus

Probab=90.92  E-value=0.29  Score=36.28  Aligned_cols=63  Identities=14%  Similarity=0.151  Sum_probs=42.4

Q ss_pred             CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          38 NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        38 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .+.+++.|+..|-+...|+...-...|...-.   -.|+.+++|+.++..+ ..|       =.+|.|.+||+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v---~~~Vtsvafn~dg~~l-~~G-------~~~G~V~v~D~~  160 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERV---QGPVTSVAFNQDGSLL-LAG-------LGDGHVTVWDMH  160 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCcc---CCcceeeEecCCCcee-ccc-------cCCCcEEEEEcc
Confidence            45678888888888888887642222221111   1577789999888765 444       568889999973

>KOG0882|consensus

Probab=90.71  E-value=3.5  Score=28.19  Aligned_cols=99  Identities=10%  Similarity=0.116  Sum_probs=66.2

Q ss_pred             cccCeeeecCCCCce--eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC---------ceeeeeccee---
Q psy8803           4 WYEEYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP---------SKVKYSHDMK---   69 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~---------~~~~~~~~~~---   69 (111)
                      ..++.+.++|-....  ....-+-|..+|.++.+.|-+..+++....|-|.-|.....         ..+++.....   
T Consensus       119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~  198 (558)
T KOG0882|consen  119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP  198 (558)
T ss_pred             ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccc
Confidence            456778888877543  22233469999999999999999999988899999988731         0111111111   


Q ss_pred             eeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          70 TFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        70 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ... ....++.|+|++..+...        +.|..|++++++
T Consensus       199 K~K-t~pts~Efsp~g~qistl--------~~DrkVR~F~~K  231 (558)
T KOG0882|consen  199 KAK-TEPTSFEFSPDGAQISTL--------NPDRKVRGFVFK  231 (558)
T ss_pred             ccc-cCccceEEccccCccccc--------CcccEEEEEEec
Confidence            011 124567899998887654        468889988753

>KOG2395|consensus

Probab=90.35  E-value=0.42  Score=32.98  Aligned_cols=56  Identities=16%  Similarity=0.181  Sum_probs=43.6

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecC
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSS   57 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~   57 (111)
                      |+++-+|.||+||-........|.+-...|..+..+.+|.+|++.+. ..+.+.++.
T Consensus       445 vvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t~  500 (644)
T KOG2395|consen  445 VVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDTL  500 (644)
T ss_pred             EEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEEe
Confidence            35778999999998544556667778889999999999999887775 466666654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.95  E-value=2.1  Score=26.12  Aligned_cols=53  Identities=11%  Similarity=0.011  Sum_probs=38.9

Q ss_pred             ccCeeeecCCCCceeeeee-------e-------cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           5 YEEYKRLDYHTPIVETEVL-------T-------QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~-------~-------~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      -+|.+.+||+..++.+..-       .       .....|..+....+|..+++-+ ++..+.|+..-
T Consensus        30 ~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   30 SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4799999999877543322       1       2456788888898899888776 56788888764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=89.71  E-value=2.6  Score=25.30  Aligned_cols=58  Identities=5%  Similarity=-0.154  Sum_probs=36.6

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      ..++.+..+|+.+|+.+-.+.. .+.+...-.. ++..++.+..++.+..+|..+++..-
T Consensus        43 ~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W  100 (238)
T PF13360_consen   43 SGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLW  100 (238)
T ss_dssp             ETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEE
T ss_pred             cCCCEEEEEECCCCCEEEEeec-cccccceeee-cccccccccceeeeEecccCCcceee
Confidence            4688899999988987766653 2111111122 34444555567799999988876543

...

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=89.33  E-value=4.8  Score=27.28  Aligned_cols=80  Identities=15%  Similarity=0.152  Sum_probs=47.4

Q ss_pred             ceeeeeeecccccEEEEEEcCCCcEEEEE---eCC-CeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEec
Q psy8803          17 IVETEVLTQHTHQVLHVSFSHNGRYFATC---SKD-GYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        17 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~---~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   92 (111)
                      +.....+......+..-.|+|+++.++-.   ... ..+.++++..+....... ..    .....-+|+|++..++.+.
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~----g~~~~P~fspDG~~l~f~~  256 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FN----GNNGAPAFSPDGSKLAFSS  256 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cC----CccCCccCCCCCCEEEEEE
Confidence            44444444445567777899998765543   222 358888888765443111 11    1111237899999998887


Q ss_pred             cccCCccccCceEEEe
Q psy8803          93 VHFGTPQSTSGEIAVF  108 (111)
Q Consensus        93 ~~~~~~~~~~~~i~iw  108 (111)
                             ..++...||
T Consensus       257 -------~rdg~~~iy  265 (425)
T COG0823         257 -------SRDGSPDIY  265 (425)
T ss_pred             -------CCCCCccEE
Confidence                   555555555

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=89.27  E-value=3.5  Score=25.22  Aligned_cols=76  Identities=18%  Similarity=0.199  Sum_probs=41.8

Q ss_pred             cccEEEEEEcCCCcEE-EEEeCCCeEEEEecCCCce-eeeecceeeeec--CceeeEEEccCCCEEEEeccccCCccccC
Q psy8803          27 THQVLHVSFSHNGRYF-ATCSKDGYILVWTSSYPSK-VKYSHDMKTFSW--KYTQYSQFNESDTLLLVSGVHFGTPQSTS  102 (111)
Q Consensus        27 ~~~v~~i~~s~~~~~l-~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  102 (111)
                      -.....++|+||++.| ++-+..+.|..+++..... ............  ...-.+++..++... ++.       -..
T Consensus       133 ~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~-va~-------~~~  204 (246)
T PF08450_consen  133 LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLW-VAD-------WGG  204 (246)
T ss_dssp             ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EE-EEE-------ETT
T ss_pred             cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEE-EEE-------cCC
Confidence            4566899999998755 5667778898888853221 111111111111  123456777766544 443       235


Q ss_pred             ceEEEeec
Q psy8803         103 GEIAVFSL  110 (111)
Q Consensus       103 ~~i~iw~~  110 (111)
                      +.|.++|.
T Consensus       205 ~~I~~~~p  212 (246)
T PF08450_consen  205 GRIVVFDP  212 (246)
T ss_dssp             TEEEEEET
T ss_pred             CEEEEECC
Confidence            55666653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.06  E-value=4.9  Score=26.66  Aligned_cols=77  Identities=9%  Similarity=0.035  Sum_probs=46.3

Q ss_pred             cEEEEEEcCCCcEEEEE-eCC----CeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCc---cc
Q psy8803          29 QVLHVSFSHNGRYFATC-SKD----GYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTP---QS  100 (111)
Q Consensus        29 ~v~~i~~s~~~~~l~s~-~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~  100 (111)
                      .+....++|++++++-+ +..    ..++++|+++++....  .+....   ...+.|.+++..++.+..+....   ..
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~~---~~~~~W~~d~~~~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENPK---FSSVSWSDDGKGFFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEEE---SEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--cccccc---cceEEEeCCCCEEEEEEeCcccccccCC
Confidence            33467899999987754 333    4599999999865542  122211   12378888888887776444321   12


Q ss_pred             cCceEEEeec
Q psy8803         101 TSGEIAVFSL  110 (111)
Q Consensus       101 ~~~~i~iw~~  110 (111)
                      ....|..|++
T Consensus       200 ~~~~v~~~~~  209 (414)
T PF02897_consen  200 YPRQVYRHKL  209 (414)
T ss_dssp             CCEEEEEEET
T ss_pred             CCcEEEEEEC
Confidence            2455666653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.82  E-value=7.4  Score=28.35  Aligned_cols=74  Identities=12%  Similarity=0.241  Sum_probs=43.9

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEecCC--Cce--ee-eecceeeee------------cCceeeEEEccC---CCEE
Q psy8803          29 QVLHVSFSHNGRYFATCSKDGYILVWTSSY--PSK--VK-YSHDMKTFS------------WKYTQYSQFNES---DTLL   88 (111)
Q Consensus        29 ~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~--~~~--~~-~~~~~~~~~------------~~~~~~v~~~~~---~~~~   88 (111)
                      .|..+..+|+|++++-.|..+ +.|..+..  +..  +. -...+.|..            -..+..+.|+|.   +.++
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            678889999999999988754 44444421  100  00 000111100            013456788885   4677


Q ss_pred             EEeccccCCccccCceEEEeecC
Q psy8803          89 LVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        89 ~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++.        ..|+++++||+.
T Consensus       165 ~vL--------tsdn~lR~y~~~  179 (717)
T PF10168_consen  165 VVL--------TSDNTLRLYDIS  179 (717)
T ss_pred             EEE--------ecCCEEEEEecC
Confidence            665        469999999973

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=88.50  E-value=4.3  Score=26.68  Aligned_cols=54  Identities=11%  Similarity=0.136  Sum_probs=37.7

Q ss_pred             eeecCCCCceeeeeeecccccEEEEEEcCCCc-EEEEE-eCCCeEEEEecCCCceee
Q psy8803           9 KRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR-YFATC-SKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         9 i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~-~~d~~i~iw~~~~~~~~~   63 (111)
                      |-++|..+++.+.++.. ...+..|..+.|.. +|.+. ..++.+.+||..+++...
T Consensus       271 VWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  271 VWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             EEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             EEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence            45566778888888763 34577888999866 44343 457899999999987776

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1920|consensus

Probab=87.88  E-value=5.2  Score=30.62  Aligned_cols=97  Identities=10%  Similarity=0.076  Sum_probs=53.4

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe---CCCeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS---KDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..+++||-+ |.+...-+...+.=.+++|-|.|.++++-.   .+..|.+|.-+....-...-+. ...-.++..++|+.
T Consensus       222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~de~~ve~L~Wns  299 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLDEKEVEELAWNS  299 (1265)
T ss_pred             eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-cccccchheeeecC
Confidence            678999987 654444444444556889999999998863   3446777755432211110000 00111244567777


Q ss_pred             CCCEEEEeccccCCccccCceEEEeec
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +...+++-. .    ......|.+|-+
T Consensus       300 ~sdiLAv~~-~----~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  300 NSDILAVVT-S----NLENSLVQLWTT  321 (1265)
T ss_pred             CCCceeeee-c----ccccceEEEEEe
Confidence            777665521 0    023344888853

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=87.87  E-value=5.9  Score=26.09  Aligned_cols=84  Identities=11%  Similarity=0.089  Sum_probs=49.9

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe----------CCCeEEEEecCCCceeee--ecce-eeeec
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS----------KDGYILVWTSSYPSKVKY--SHDM-KTFSW   73 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~--~~~~-~~~~~   73 (111)
                      +.+.+.|..+++.+-++.  .+....+..+||++.+.++.          ....+.+||..+......  ...- +....
T Consensus        17 ~rv~viD~d~~k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            478888988888877775  34445577899998877642          234688999988654331  0000 11111


Q ss_pred             CceeeEEEccCCCEEEEec
Q psy8803          74 KYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~   92 (111)
                      ...+..+++.+++.+++..
T Consensus        95 ~~~~~~~ls~dgk~~~V~N  113 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQN  113 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEE
T ss_pred             ccccceEEccCCcEEEEEc
Confidence            2334557777888777654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=87.85  E-value=1.9  Score=22.30  Aligned_cols=31  Identities=16%  Similarity=0.254  Sum_probs=25.6

Q ss_pred             CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          74 KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ...+.++.+|+...+.++.       ...+.|+++..+
T Consensus        54 ~~aNGI~~s~~~k~lyVa~-------~~~~~I~vy~~~   84 (86)
T PF01731_consen   54 SFANGIAISPDKKYLYVAS-------SLAHSIHVYKRH   84 (86)
T ss_pred             CCCceEEEcCCCCEEEEEe-------ccCCeEEEEEec
Confidence            4567899999999998887       778889998753

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=87.34  E-value=2.8  Score=21.83  Aligned_cols=43  Identities=12%  Similarity=0.242  Sum_probs=26.1

Q ss_pred             EeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEec
Q psy8803          45 CSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        45 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   92 (111)
                      +..+|++.-||..+.+...-   ...+  ...+.|+.++++..++++=
T Consensus        33 ~~~~GRll~ydp~t~~~~vl---~~~L--~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVL---LDGL--YFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             T---EEEEEEETTTTEEEEE---EEEE--SSEEEEEE-TTSSEEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEe---hhCC--CccCeEEEcCCCCEEEEEe
Confidence            34457777888877654321   1222  4678999999999888853

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.33  E-value=4.3  Score=26.50  Aligned_cols=49  Identities=6%  Similarity=0.045  Sum_probs=30.5

Q ss_pred             CCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          48 DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        48 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .+.+.++|+++.........     ....+...|+|++..++..-         ++.|.+.++
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-----~~~~~~~~~sP~g~~~~~v~---------~~nly~~~~   70 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-----PPKLQDAKWSPDGKYIAFVR---------DNNLYLRDL   70 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-----ETTBSEEEE-SSSTEEEEEE---------TTEEEEESS
T ss_pred             ceeEEEEecCCCceEECcCC-----ccccccceeecCCCeeEEEe---------cCceEEEEC
Confidence            35678888888665542111     14556778899998887743         566766653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=87.31  E-value=5.9  Score=26.62  Aligned_cols=50  Identities=6%  Similarity=0.066  Sum_probs=37.2

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP   59 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~   59 (111)
                      .|+||+.. |+++..+.-..+.+.++.|..+.+++ .-..||.++++|+...
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCCc
Confidence            58888877 66666665444899999998855554 5557999999998643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=87.26  E-value=6  Score=25.55  Aligned_cols=59  Identities=17%  Similarity=0.336  Sum_probs=31.9

Q ss_pred             cccEEEEEEcCCCcEEEEEeCCCeEEEEecCC-CceeeeecceeeeecCceeeEEEccCCCEEEE
Q psy8803          27 THQVLHVSFSHNGRYFATCSKDGYILVWTSSY-PSKVKYSHDMKTFSWKYTQYSQFNESDTLLLV   90 (111)
Q Consensus        27 ~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   90 (111)
                      .+.+..+.-++||++++.+.......-|+.-. ....+ ....    -..++.+.|.|++...++
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~-~r~~----~~riq~~gf~~~~~lw~~  203 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH-NRNS----SRRIQSMGFSPDGNLWML  203 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE-E--S----SS-EEEEEE-TTS-EEEE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE-ccCc----cceehhceecCCCCEEEE
Confidence            45677888889999998887776777887643 23332 1111    146778899998776555

>KOG1916|consensus

Probab=86.69  E-value=0.61  Score=34.37  Aligned_cols=53  Identities=21%  Similarity=0.223  Sum_probs=34.5

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEE-----------EEEcCCCcEEEEEeCCCeEEEEecC
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLH-----------VSFSHNGRYFATCSKDGYILVWTSS   57 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~-----------i~~s~~~~~l~s~~~d~~i~iw~~~   57 (111)
                      ..++.+++..+..-. ...+.+|...+..           -..||||..++.++.||.++.|.+.
T Consensus       202 ~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  202 LKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             cCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            456677776665322 2333445433332           2379999999999999999998864

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=86.49  E-value=1.4  Score=17.39  Aligned_cols=25  Identities=16%  Similarity=0.260  Sum_probs=18.2

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEE
Q psy8803          30 VLHVSFSHNGRYFATCSKDGYILVW   54 (111)
Q Consensus        30 v~~i~~s~~~~~l~s~~~d~~i~iw   54 (111)
                      ...++.+++|+++++=..+.+|.++
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            3567777888888887777777654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.35  E-value=1.7  Score=18.31  Aligned_cols=29  Identities=17%  Similarity=0.315  Sum_probs=17.7

Q ss_pred             ccccEEEEEEcCCCcEEEEEe-CC--CeEEEE
Q psy8803          26 HTHQVLHVSFSHNGRYFATCS-KD--GYILVW   54 (111)
Q Consensus        26 ~~~~v~~i~~s~~~~~l~s~~-~d--~~i~iw   54 (111)
                      ....-....|+|||+.|+-.+ .+  +...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344567789999997665544 44  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG3621|consensus

Probab=86.17  E-value=2.4  Score=30.29  Aligned_cols=57  Identities=11%  Similarity=0.041  Sum_probs=40.7

Q ss_pred             cccccCeeeecCCCCcee-----eeee-ecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           2 KSWYEEYKRLDYHTPIVE-----TEVL-TQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~-----~~~~-~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      .+.-.|.|.++-+....+     +..+ ..|...|.++.|++++..+.+|...|++..-.+..
T Consensus        93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            345566777777764311     1111 13678899999999999999999999988776655

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=85.64  E-value=9.3  Score=26.18  Aligned_cols=100  Identities=15%  Similarity=0.188  Sum_probs=52.5

Q ss_pred             ccCeeeecCCCCceeeeeeec-cc-ccEEEEEEcCC--C-cEEEEEeCCCeEEEEec-CCC-ceeeeecceeee---ec-
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQ-HT-HQVLHVSFSHN--G-RYFATCSKDGYILVWTS-SYP-SKVKYSHDMKTF---SW-   73 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~-~~-~~v~~i~~s~~--~-~~l~s~~~d~~i~iw~~-~~~-~~~~~~~~~~~~---~~-   73 (111)
                      +-.++.+||....+.++.+.- -+ .....+.|.++  . .-++.+....+|-.|-- +.+ ........+...   .| 
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            557899999999998888752 22 34667888664  3 34666655555555533 222 111100011100   01 


Q ss_pred             ------------CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          74 ------------KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        74 ------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                                  ..++.+..+.++..|.+++       =..|.|+.||+.
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~-------W~~GdvrqYDIS  342 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSN-------WLHGDVRQYDIS  342 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEE-------TTTTEEEEEE-S
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEc-------ccCCcEEEEecC
Confidence                        2356778899999999987       678889999973

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=85.55  E-value=8.8  Score=25.80  Aligned_cols=44  Identities=16%  Similarity=0.147  Sum_probs=31.3

Q ss_pred             eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803          19 ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus        19 ~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      +..-+....+.|.+++.| |--.++.|.++|.+.|.|+|.+....
T Consensus        78 P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~  121 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIY  121 (395)
T ss_dssp             EEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             chhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEe
Confidence            344444568999999996 56678889999999999999876554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=83.24  E-value=8.6  Score=23.86  Aligned_cols=59  Identities=25%  Similarity=0.305  Sum_probs=34.6

Q ss_pred             CCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          37 HNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        37 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ..++.|+.|.++| +.+++.........   +.  ...++..+...|+-+.+++..         |+.+.++++
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i~--~~~~I~ql~vl~~~~~llvLs---------d~~l~~~~L   63 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---IL--KLSSITQLSVLPELNLLLVLS---------DGQLYVYDL   63 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcccee---Ee--ecceEEEEEEecccCEEEEEc---------CCccEEEEc
Confidence            3477888888888 88888832211110   10  011244555566666777754         577888876

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2114|consensus

Probab=82.66  E-value=13  Score=27.70  Aligned_cols=53  Identities=8%  Similarity=0.111  Sum_probs=29.6

Q ss_pred             cccCeeeecCCCCceeeeeeeccccc-EEEEEEcCC-CcEEEEEeCCC-----eEEEEecCC
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQ-VLHVSFSHN-GRYFATCSKDG-----YILVWTSSY   58 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~-v~~i~~s~~-~~~l~s~~~d~-----~i~iw~~~~   58 (111)
                      ..||.|.+.+-. -+.++.|+.+... |..+ +.-+ ...|++-++|.     .+++|+++.
T Consensus        42 t~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   42 TADGRVVILNSS-FQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             eccccEEEeccc-ceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccc
Confidence            344444444322 2334566666655 3333 3334 46777777654     489999864

>KOG3630|consensus

Probab=82.44  E-value=7.6  Score=29.85  Aligned_cols=56  Identities=13%  Similarity=0.111  Sum_probs=37.1

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      ..-|+.|++..+........-..-.....+++|+|.|..++.|-.+|++.-|-...
T Consensus       174 ~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  174 DLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             hccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence            34455555555543322211112456789999999999999999999998886543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=80.48  E-value=19  Score=25.96  Aligned_cols=64  Identities=11%  Similarity=0.177  Sum_probs=36.8

Q ss_pred             EEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-----eecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceE
Q psy8803          31 LHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-----YSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEI  105 (111)
Q Consensus        31 ~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i  105 (111)
                      .-+.-+.-+..-+.-+....+.|||.+......     ....+..++|.      +.|++..+++.|        ..+.|
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWt------st~d~qsiLaVG--------f~~~v   98 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWT------STPDGQSILAVG--------FPHHV   98 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceee------ecCCCCEEEEEE--------cCcEE
Confidence            333344434433333345579999998765433     24456677775      466777777765        45556


Q ss_pred             EEe
Q psy8803         106 AVF  108 (111)
Q Consensus       106 ~iw  108 (111)
                      .++
T Consensus        99 ~l~  101 (631)
T PF12234_consen   99 LLY  101 (631)
T ss_pred             EEE
Confidence            555

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2377|consensus

Probab=80.17  E-value=17  Score=25.38  Aligned_cols=33  Identities=9%  Similarity=0.074  Sum_probs=29.4

Q ss_pred             ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803          26 HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus        26 ~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      ..+.|..+.||+|.+.|+..-.++.+.+++...
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~   97 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIP   97 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCC
Confidence            457999999999999999999999999998843

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=80.05  E-value=15  Score=24.45  Aligned_cols=92  Identities=7%  Similarity=0.032  Sum_probs=57.6

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeC---CCeEEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSK---DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      +..|.+.|........... -...-..+.+++++..+..+..   +.++.+.|..+......   +.... .| ..+++.
T Consensus        95 ~~~v~vid~~~~~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~---~~vG~-~P-~~~a~~  168 (381)
T COG3391          95 SNTVSVIDTATNTVLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT---IPVGN-TP-TGVAVD  168 (381)
T ss_pred             CCeEEEEcCcccceeeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE---EecCC-Cc-ceEEEC
Confidence            4566677755444433332 1125567899998865444433   67888888877665552   11111 23 678999


Q ss_pred             cCCCEEEEeccccCCccccCceEEEeec
Q psy8803          83 ESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      |++..+.++.       ..++.|.+.|.
T Consensus       169 p~g~~vyv~~-------~~~~~v~vi~~  189 (381)
T COG3391         169 PDGNKVYVTN-------SDDNTVSVIDT  189 (381)
T ss_pred             CCCCeEEEEe-------cCCCeEEEEeC
Confidence            9999887766       56777877764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.87
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.86
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.86
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.83
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.83
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.83
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.83
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.83
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.83
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.83
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.82
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.82
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.82
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.82
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.81
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.81
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.81
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.81
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.8
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.8
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.8
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.8
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.79
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.79
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.79
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.79
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.79
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.78
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.78
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.78
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.78
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.78
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.77
2pm7_B	297	Protein transport protein SEC13, protein transport	99.77
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.77
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.77
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.76
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.76
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.76
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.76
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.75
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.75
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.75
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.75
2pm7_B	297	Protein transport protein SEC13, protein transport	99.75
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.75
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.74
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.74
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.74
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.74
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.73
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.73
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.73
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.73
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.72
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.72
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.72
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.72
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.72
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.72
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.72
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.72
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.72
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.72
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.71
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.71
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.71
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.71
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.71
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.71
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.7
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.7
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.7
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.7
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.7
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.7
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.7
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.69
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.69
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.69
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.69
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.69
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.68
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.68
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.68
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.67
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.67
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.67
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.67
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.67
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.67
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.66
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.66
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.66
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.66
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.66
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.65
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.65
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.65
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.65
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.65
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.64
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.64
3jro_A	753	Fusion protein of protein transport protein SEC13	99.64
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.64
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.64
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.63
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.63
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.62
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.62
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.62
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.62
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.61
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.61
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.6
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.59
3jro_A	753	Fusion protein of protein transport protein SEC13	99.59
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.58
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.57
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.56
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.56
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.55
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.55
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.54
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.54
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.52
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.52
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.49
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.39
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.38
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.27
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.25
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.22
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.19
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.16
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.16
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.16
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.14
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.12
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.09
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.08
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.08
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.08
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.07
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.05
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.05
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.02
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.02
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.02
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.97
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.95
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.8
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.78
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.78
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.75
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.74
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.71
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.69
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.66
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.65
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.63
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.56
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.53
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.48
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.48
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.43
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.42
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.39
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.39
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.36
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.36
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.36
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.34
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.33
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.32
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.28
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.27
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.26
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.21
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.2
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.14
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.13
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.03
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.97
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.96
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.94
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.94
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.93
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.93
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.89
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.86
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.85
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.84
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.76
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.7
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.66
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.55
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.49
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.42
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.42
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.41
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.35
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.33
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.32
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.28
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.27
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.27
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.25
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.23
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.18
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.13
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.03
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.02
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.93
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.9
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.87
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.86
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.85
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.82
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.79
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.72
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.72
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.68
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.67
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.58
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.53
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.53
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.46
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.45
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.14
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.08
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.06
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	95.89
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	95.73
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	95.71
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.2
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	95.14
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	94.63
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.5
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	94.47
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.33
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.22
3v65_B	386	Low-density lipoprotein receptor-related protein;	93.86
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	93.84
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.84
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	93.73
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	93.53
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	93.36
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	93.01
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	92.9
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	92.45
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	92.07
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	91.9
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.79
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	91.67
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	91.04
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	90.82
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	90.69
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	90.37
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	89.7
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	89.68
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	89.55
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	89.38
2p4o_A	306	Hypothetical protein; putative lactonase, structur	88.89
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	88.82
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	88.78
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	88.75
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.66
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	88.57
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	88.52
3v65_B	386	Low-density lipoprotein receptor-related protein;	88.28
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	88.1
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	87.85
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	86.76
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	85.94
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	85.31
3kya_A	496	Putative phosphatase; structural genomics, joint c	85.12
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	84.82
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	84.8
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	83.84
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	82.41
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	82.21
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	81.04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	80.65

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.87  E-value=1.4e-21  Score=122.54  Aligned_cols=98  Identities=13%  Similarity=0.084  Sum_probs=81.8

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCC-cEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNG-RYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +++.|++|++||+++++++..+.+|...|.+++|+|++ ++|++++.|++|++||++.++....    ..+ -..+++++
T Consensus       232 sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~----~~H-~~~V~~v~  306 (344)
T 4gqb_B          232 FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS----QAH-RDFVRDAT  306 (344)
T ss_dssp             EEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE----CCC-SSCEEEEE
T ss_pred             EeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE----cCC-CCCEEEEE
Confidence            56789999999999999999999999999999999997 6899999999999999988765531    111 14577889


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..+++++       +.|++|++|++.
T Consensus       307 ~sp~~~~llas~-------s~D~~v~~w~v~  330 (344)
T 4gqb_B          307 WSPLNHSLLTTV-------GWDHQVVHHVVP  330 (344)
T ss_dssp             ECSSSTTEEEEE-------ETTSCEEEEECC
T ss_pred             EeCCCCeEEEEE-------cCCCeEEEEECC
Confidence            999988888888       899999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.86  E-value=2.6e-21  Score=121.26  Aligned_cols=100  Identities=15%  Similarity=0.037  Sum_probs=81.0

Q ss_pred             CcccccCeeeecCCCCceeee----eeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETE----VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~----~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~   76 (111)
                      ++++.||+|+|||+.+++.+.    .+.+|.+.|.+++|+|++++|++++.|++|++||+++++....   ...+ -..+
T Consensus        97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~---~~~h-~~~V  172 (344)
T 4gqb_B           97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS---YRAH-AAQV  172 (344)
T ss_dssp             EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCC-SSCE
T ss_pred             EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE---EcCc-CCce
Confidence            357889999999999876443    3458999999999999999999999999999999998776542   1111 1456


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++++|+|++..+++++       +.|+.|++||++
T Consensus       173 ~~~~~~~~~~~~l~s~-------s~D~~v~iwd~~  200 (344)
T 4gqb_B          173 TCVAASPHKDSVFLSC-------SEDNRILLWDTR  200 (344)
T ss_dssp             EEEEECSSCTTEEEEE-------ETTSCEEEEETT
T ss_pred             EEEEecCCCCCceeee-------cccccccccccc
Confidence            7788999887777777       889999999975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.86  E-value=5e-21  Score=117.83  Aligned_cols=101  Identities=14%  Similarity=0.126  Sum_probs=82.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||++........  .... -.++.+++
T Consensus        71 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~--~~~h-~~~v~~v~  147 (304)
T 2ynn_A           71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT--FEGH-EHFVMCVA  147 (304)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE--ECCC-CSCEEEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh--hccc-CCcEEEEE
Confidence            36788999999999999999999999999999999999999999999999999999876433210  1111 14567888


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|.+..++++|       +.|+.|++||++
T Consensus       148 ~~p~~~~~l~sg-------s~D~~v~iwd~~  171 (304)
T 2ynn_A          148 FNPKDPSTFASG-------CLDRTVKVWSLG  171 (304)
T ss_dssp             ECTTCTTEEEEE-------ETTSEEEEEETT
T ss_pred             ECCCCCCEEEEE-------eCCCeEEEEECC
Confidence            999655555677       889999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.83  E-value=6.5e-20  Score=112.83  Aligned_cols=99  Identities=16%  Similarity=0.140  Sum_probs=83.0

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.||+|++||+.+++.+..+..|...|.++.|+|++++|++++.|+.|++||+++++....   .... -..+++++
T Consensus        29 ~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~---~~~h-~~~v~~~~  104 (304)
T 2ynn_A           29 LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD---FEAH-PDYIRSIA  104 (304)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE---EECC-SSCEEEEE
T ss_pred             EEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE---EeCC-CCcEEEEE
Confidence            4678999999999999999999999999999999999999999999999999999998765541   1111 14567788


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..+ +++       +.|+.|++||++
T Consensus       105 ~~~~~~~l-~sg-------s~D~~v~lWd~~  127 (304)
T 2ynn_A          105 VHPTKPYV-LSG-------SDDLTVKLWNWE  127 (304)
T ss_dssp             ECSSSSEE-EEE-------ETTSCEEEEEGG
T ss_pred             EcCCCCEE-EEE-------CCCCeEEEEECC
Confidence            99988876 455       789999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.83  E-value=8.8e-20  Score=113.75  Aligned_cols=98  Identities=17%  Similarity=0.134  Sum_probs=82.5

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +++.|++|++||+.+++.+..+.+|.+.|.+++|+|+++++++++.|+.+++||++.......   .... -.+++.++|
T Consensus       159 s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~---~~~h-~~~v~~v~~  234 (340)
T 1got_B          159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT---FTGH-ESDINAICF  234 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE---ECCC-SSCEEEEEE
T ss_pred             EEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE---EcCC-cCCEEEEEE
Confidence            567899999999999999999999999999999999999999999999999999988765541   1111 145678899


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|++..++ ++       +.|+.|++||++
T Consensus       235 ~p~~~~l~-s~-------s~d~~v~iwd~~  256 (340)
T 1got_B          235 FPNGNAFA-TG-------SDDATCRLFDLR  256 (340)
T ss_dssp             CTTSSEEE-EE-------ETTSCEEEEETT
T ss_pred             cCCCCEEE-EE-------cCCCcEEEEECC
Confidence            99888764 55       789999999975

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.83  E-value=3.4e-20  Score=116.53  Aligned_cols=98  Identities=9%  Similarity=0.075  Sum_probs=80.7

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCC-cEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNG-RYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +++.|+.|++||+++++++..+.+|...|.+++|+|++ ++|++++.|++|++||+++++.....    .+. .++++++
T Consensus       244 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~----~H~-~~V~~va  318 (357)
T 4g56_B          244 CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL----SHR-DFVTGVA  318 (357)
T ss_dssp             EEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC----CCS-SCEEEEE
T ss_pred             EeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC----CCC-CCEEEEE
Confidence            56789999999999999999999999999999999986 68999999999999999987665421    111 4677889


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|.+..+++++       +.|+.|++||+.
T Consensus       319 fsP~d~~~l~s~-------s~Dg~v~iW~~~  342 (357)
T 4g56_B          319 WSPLDHSKFTTV-------GWDHKVLHHHLP  342 (357)
T ss_dssp             ECSSSTTEEEEE-------ETTSCEEEEECC
T ss_pred             EeCCCCCEEEEE-------cCCCeEEEEECC
Confidence            998544445666       789999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.83  E-value=5.6e-20  Score=114.09  Aligned_cols=99  Identities=17%  Similarity=0.216  Sum_probs=82.4

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      |+++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++.......   .... -.++..++
T Consensus       180 asg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~h-~~~v~~~~  255 (321)
T 3ow8_A          180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT---LSGH-ASWVLNVA  255 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE---ECCC-SSCEEEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE---EcCC-CCceEEEE
Confidence            3567899999999999999999999999999999999999999999999999999987665431   1111 14567788


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..+ +++       +.|+.|++||++
T Consensus       256 ~sp~~~~l-~s~-------s~D~~v~iwd~~  278 (321)
T 3ow8_A          256 FCPDDTHF-VSS-------SSDKSVKVWDVG  278 (321)
T ss_dssp             ECTTSSEE-EEE-------ETTSCEEEEETT
T ss_pred             ECCCCCEE-EEE-------eCCCcEEEEeCC
Confidence            99998876 455       789999999974

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.83  E-value=1.6e-20  Score=119.16  Aligned_cols=100  Identities=16%  Similarity=0.175  Sum_probs=80.3

Q ss_pred             CcccccCeeeecCCCCcee-----eeeeecccccEEEEEEcC--------CCcEEEEEeCCCeEEEEecCCCceeeeecc
Q psy8803           1 KKSWYEEYKRLDYHTPIVE-----TEVLTQHTHQVLHVSFSH--------NGRYFATCSKDGYILVWTSSYPSKVKYSHD   67 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~v~~i~~s~--------~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~   67 (111)
                      |+++.|++|+|||...++.     +..+.+|.+.|.+++|+|        |+++|++++.|++++|||++.......   
T Consensus       105 as~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~---  181 (393)
T 4gq1_A          105 ACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA---  181 (393)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE---
T ss_pred             EEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee---
Confidence            4678899999999987643     334678999999999998        789999999999999999987654431   


Q ss_pred             eeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          68 MKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..... .++.+++|+|++..+++++       +.|++|++||++
T Consensus       182 ~~~~~-~~v~~v~~~p~~~~~l~~~-------~~d~~v~~wd~~  217 (393)
T 4gq1_A          182 GYPLS-SPGISVQFRPSNPNQLIVG-------ERNGNIRIFDWT  217 (393)
T ss_dssp             EEECS-SCEEEEEEETTEEEEEEEE-------ETTSEEEEEETT
T ss_pred             ecCCC-CCcEEEEECCCCCceEEec-------CCCCEEEEEECC
Confidence            12222 4667899999988777888       899999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.83  E-value=6.2e-20  Score=117.07  Aligned_cols=98  Identities=16%  Similarity=0.279  Sum_probs=81.0

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +++.|++|++||+.+++++..+.+|...|.++.|+|++++|++++.|+.|++||++.......   .... -.++.+++|
T Consensus       313 sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~---~~~h-~~~v~~l~~  388 (410)
T 1vyh_C          313 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT---LNAH-EHFVTSLDF  388 (410)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE---EECC-SSCEEEEEE
T ss_pred             EEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE---EcCC-CCcEEEEEE
Confidence            567899999999999999999999999999999999999999999999999999987655431   1111 145678889


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|++..+ ++|       +.|+.|+||++|
T Consensus       389 ~~~~~~l-~sg-------s~D~~i~vW~~r  410 (410)
T 1vyh_C          389 HKTAPYV-VTG-------SVDQTVKVWECR  410 (410)
T ss_dssp             CSSSSCE-EEE-------ETTSEEEEEC--
T ss_pred             cCCCCEE-EEE-------eCCCcEEEEeCC
Confidence            9988876 556       789999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.83  E-value=3.2e-19  Score=110.43  Aligned_cols=103  Identities=17%  Similarity=0.175  Sum_probs=79.9

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee---eecceeeeec----
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK---YSHDMKTFSW----   73 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~----   73 (111)
                      ++++.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.+++||++......   |...+..+.+    
T Consensus        81 ~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~  160 (319)
T 3frx_A           81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE  160 (319)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC-
T ss_pred             EEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCC
Confidence            367899999999999999999999999999999999999999999999999999987532111   2111111111    


Q ss_pred             ------------------------------------CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          74 ------------------------------------KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        74 ------------------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                                                          .+++.++|+|++..++ ++       +.|+.|++||++
T Consensus       161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~-s~-------~~dg~i~iwd~~  226 (319)
T 3frx_A          161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIA-SA-------GKDGEIMLWNLA  226 (319)
T ss_dssp             -----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEE-EE-------ETTCEEEEEETT
T ss_pred             CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEE-EE-------eCCCeEEEEECC
Confidence                                                2356788999887764 44       678999999874

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.82  E-value=1.7e-19  Score=111.91  Aligned_cols=99  Identities=17%  Similarity=0.209  Sum_probs=82.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.|++|++||+..++....+.+|...|.+++|+|++.+|++++.|+++++||+++..+...   .... -.++..++
T Consensus       222 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~---~~~h-~~~v~~v~  297 (321)
T 3ow8_A          222 VTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT---FFDH-QDQVWGVK  297 (321)
T ss_dssp             EEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCC-SSCEEEEE
T ss_pred             EEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE---EcCC-CCcEEEEE
Confidence            3678899999999999999999999999999999999999999999999999999998766542   1111 14566788


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..++ ++       +.|+.|++||..
T Consensus       298 ~s~~g~~l~-s~-------~~d~~i~vwd~p  320 (321)
T 3ow8_A          298 YNGNGSKIV-SV-------GDDQEIHIYDCP  320 (321)
T ss_dssp             ECTTSSEEE-EE-------ETTCCEEEEECC
T ss_pred             ECCCCCEEE-EE-------eCCCeEEEEeCC
Confidence            999888765 55       689999999963

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.82  E-value=3.1e-19  Score=110.51  Aligned_cols=102  Identities=14%  Similarity=0.224  Sum_probs=80.8

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee---eecceeeeecC----
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK---YSHDMKTFSWK----   74 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~~----   74 (111)
                      +++.|++|++||+.+.+....+.+|...|.+++|+|++++|++++.|+.|++||++..+...   ....+..+.|+    
T Consensus       171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~  250 (319)
T 3frx_A          171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY  250 (319)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSS
T ss_pred             EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCC
Confidence            56789999999999999888999999999999999999999999999999999998754332   11222222221    


Q ss_pred             -------------------------------------ceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          75 -------------------------------------YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        75 -------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                                                           .+..++|+|++..++ +|       +.|+.|++||+.
T Consensus       251 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-sg-------~~Dg~i~vWd~~  316 (319)
T 3frx_A          251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF-AG-------YTDNVIRVWQVM  316 (319)
T ss_dssp             EEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE-EE-------ETTSCEEEEEEE
T ss_pred             EEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEE-Ee-------ecCceEEEEEEe
Confidence                                                 234689999988874 45       789999999973

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.82  E-value=9.1e-20  Score=116.29  Aligned_cols=99  Identities=20%  Similarity=0.231  Sum_probs=82.9

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.|++|++||+.+++....+.+|.+.|.+++|+|++++|++++.|++|++||+........   ..... .++.+++
T Consensus       124 ~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~---~~~h~-~~V~~v~  199 (410)
T 1vyh_C          124 VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT---MHGHD-HNVSSVS  199 (410)
T ss_dssp             EEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC---CCCCS-SCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE---EcCCC-CCEEEEE
Confidence            4678899999999999999999999999999999999999999999999999999987665541   11111 4567788


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..+ +++       +.|+.|++||++
T Consensus       200 ~~p~~~~l-~s~-------s~D~~i~~wd~~  222 (410)
T 1vyh_C          200 IMPNGDHI-VSA-------SRDKTIKMWEVQ  222 (410)
T ss_dssp             ECSSSSEE-EEE-------ETTSEEEEEETT
T ss_pred             EeCCCCEE-EEE-------eCCCeEEEEECC
Confidence            99988876 455       789999999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.82  E-value=5.4e-19  Score=110.24  Aligned_cols=58  Identities=19%  Similarity=0.194  Sum_probs=54.4

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      ++++.|++|++||+.+++.+..+.+|...|.+++|+|+++.|++++.|+.|++||+..
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence            3678899999999999999999999999999999999999999999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.81  E-value=4.9e-19  Score=110.44  Aligned_cols=99  Identities=14%  Similarity=0.142  Sum_probs=79.8

Q ss_pred             CcccccCeeeecCCCC-------ceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeec
Q psy8803           1 KKSWYEEYKRLDYHTP-------IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSW   73 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~-------~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~   73 (111)
                      ++++.|++|++||+..       +.+...+.+|...|.+++|+|++.++++++.|+++++||++++.....   .... -
T Consensus        43 ~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~---~~~h-~  118 (343)
T 2xzm_R           43 ISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR---FVGH-Q  118 (343)
T ss_dssp             EEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEE---EECC-C
T ss_pred             EEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEE---EcCC-C
Confidence            4678899999999874       345677889999999999999999999999999999999998765541   1111 1


Q ss_pred             CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          74 KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .++.+++|+|++..+++ +       +.|+.|++||++
T Consensus       119 ~~v~~v~~sp~~~~l~s-~-------~~d~~i~~wd~~  148 (343)
T 2xzm_R          119 SEVYSVAFSPDNRQILS-A-------GAEREIKLWNIL  148 (343)
T ss_dssp             SCEEEEEECSSTTEEEE-E-------ETTSCEEEEESS
T ss_pred             CcEEEEEECCCCCEEEE-E-------cCCCEEEEEecc
Confidence            45677889999888754 4       679999999973

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.81  E-value=6.3e-19  Score=110.63  Aligned_cols=98  Identities=16%  Similarity=0.185  Sum_probs=78.7

Q ss_pred             ccccCeeeecCCCCce---------------e-eeeeecccccEEEEEEcCCCcEEEEEeCCCe-EEEEecCCCceeeee
Q psy8803           3 SWYEEYKRLDYHTPIV---------------E-TEVLTQHTHQVLHVSFSHNGRYFATCSKDGY-ILVWTSSYPSKVKYS   65 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~---------------~-~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~   65 (111)
                      +..||.|++||+.++.               + +..+.+|.+.|.+++|+|++++|++++.|++ +++||++++..... 
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~-  233 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE-  233 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE-
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE-
Confidence            6789999999998765               2 6778899999999999999999999999998 99999998776542 


Q ss_pred             ccee-eeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          66 HDMK-TFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        66 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                        .. ...-.++++++|+|++..++ ++       +.|+.|++||++
T Consensus       234 --~~~g~h~~~v~~~~~s~~~~~l~-s~-------s~d~~v~iw~~~  270 (355)
T 3vu4_A          234 --FRRGLDRADVVDMKWSTDGSKLA-VV-------SDKWTLHVFEIF  270 (355)
T ss_dssp             --EECTTCCSCEEEEEECTTSCEEE-EE-------ETTCEEEEEESS
T ss_pred             --EEcCCCCCcEEEEEECCCCCEEE-EE-------ECCCEEEEEEcc
Confidence              22 10125677899999988765 44       689999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.81  E-value=7.4e-19  Score=109.59  Aligned_cols=101  Identities=18%  Similarity=0.115  Sum_probs=81.9

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.|++|++||+++++.+..+.+|...|.+++|+|+++.|++++.|+.+++||++........... . ....+..++
T Consensus       200 ~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~-~~~~v~~~~  277 (340)
T 1got_B          200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD-N-IICGITSVS  277 (340)
T ss_dssp             EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-T-CCSCEEEEE
T ss_pred             EEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC-C-cccceEEEE
Confidence            35678999999999999999999999999999999999999999999999999999886554311100 0 013467889


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..++ +|       +.|+.|++||++
T Consensus       278 ~s~~g~~l~-~g-------~~d~~i~vwd~~  300 (340)
T 1got_B          278 FSKSGRLLL-AG-------YDDFNCNVWDAL  300 (340)
T ss_dssp             ECTTSSEEE-EE-------ETTSEEEEEETT
T ss_pred             ECCCCCEEE-EE-------CCCCeEEEEEcc
Confidence            999988765 45       689999999964

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.81  E-value=9.1e-19  Score=109.85  Aligned_cols=99  Identities=16%  Similarity=0.144  Sum_probs=81.7

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcC--CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSH--NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      ++++.|++|++||+.+++.+..+.+|...|.++.|+|  +++.|++++.|+.+++||+++......   ... .-.++++
T Consensus       170 ~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~---~~~-h~~~v~~  245 (354)
T 2pbi_B          170 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA---FET-HESDVNS  245 (354)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE---ECC-CSSCEEE
T ss_pred             EEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE---ecC-CCCCeEE
Confidence            3578899999999999999999999999999999988  478999999999999999998765541   111 1245678


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++|+|++..+ +++       +.|+.|++||++
T Consensus       246 v~~~p~~~~l-~s~-------s~D~~v~lwd~~  270 (354)
T 2pbi_B          246 VRYYPSGDAF-ASG-------SDDATCRLYDLR  270 (354)
T ss_dssp             EEECTTSSEE-EEE-------ETTSCEEEEETT
T ss_pred             EEEeCCCCEE-EEE-------eCCCeEEEEECC
Confidence            8899988776 455       789999999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.80  E-value=7.9e-19  Score=116.71  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=83.2

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeec--ceee-eecCcee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSH--DMKT-FSWKYTQ   77 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~-~~~~~~~   77 (111)
                      ++++.|++|++||..+++.+..+.+|...|.+++|+|++++|++++.|++|++||+..+.......  .... ..-.++.
T Consensus       164 ~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~  243 (611)
T 1nr0_A          164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF  243 (611)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred             EEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEE
Confidence            367889999999999999999999999999999999999999999999999999998766543210  0000 1124677


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .++|+|++..+ +++       +.|++|++||++
T Consensus       244 ~v~~spdg~~l-~s~-------s~D~~v~lWd~~  269 (611)
T 1nr0_A          244 GLTWSPDGTKI-ASA-------SADKTIKIWNVA  269 (611)
T ss_dssp             EEEECTTSSEE-EEE-------ETTSEEEEEETT
T ss_pred             EEEECCCCCEE-EEE-------eCCCeEEEEeCC
Confidence            89999998876 455       789999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.80  E-value=8.5e-19  Score=108.99  Aligned_cols=101  Identities=17%  Similarity=0.312  Sum_probs=71.3

Q ss_pred             CcccccCeeeecCCCC-------ceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC-ceeeeecceeeee
Q psy8803           1 KKSWYEEYKRLDYHTP-------IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP-SKVKYSHDMKTFS   72 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~-------~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~~~   72 (111)
                      |+++.|++|++||...       .+.+..+.+|...|.+++|+|++++|++++.|+++++||++.. ............ 
T Consensus        74 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h-  152 (330)
T 2hes_X           74 AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH-  152 (330)
T ss_dssp             EEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC-
T ss_pred             EEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC-
Confidence            4678899999999852       3566778899999999999999999999999999999999532 111100011111 


Q ss_pred             cCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          73 WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      -.+++.++|+|++..+ +++       +.|+.|++||+
T Consensus       153 ~~~v~~v~~~p~~~~l-~s~-------s~D~~i~iW~~  182 (330)
T 2hes_X          153 SQDVKHVIWHPSEALL-ASS-------SYDDTVRIWKD  182 (330)
T ss_dssp             SSCEEEEEECSSSSEE-EEE-------ETTSCEEEEEE
T ss_pred             CCceEEEEECCCCCEE-EEE-------cCCCeEEEEEC
Confidence            1456788899988776 555       78999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.80  E-value=5.4e-19  Score=111.68  Aligned_cols=102  Identities=18%  Similarity=0.183  Sum_probs=80.4

Q ss_pred             CcccccCeeeecCCC-CceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecc---eeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHT-PIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHD---MKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---~~~~~~~~~   76 (111)
                      ++++.|++|++||++ .++.+..+.+|.+.|.+++|+|+++.|++++.|++|++||++.+........   ........+
T Consensus       222 ~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v  301 (380)
T 3iz6_a          222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV  301 (380)
T ss_dssp             EEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSC
T ss_pred             EEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCce
Confidence            357789999999998 4577888899999999999999999999999999999999998765541110   001111236


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ..++|+|++..+++ |       +.++.|++||+
T Consensus       302 ~~~~~s~~g~~l~~-g-------~~dg~i~vwd~  327 (380)
T 3iz6_a          302 TSVAFSISGRLLFA-G-------YSNGDCYVWDT  327 (380)
T ss_dssp             SEEEECSSSSEEEE-E-------CTTSCEEEEET
T ss_pred             EEEEECCCCCEEEE-E-------ECCCCEEEEEC
Confidence            78999999988754 5       67999999996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.80  E-value=9.2e-19  Score=109.54  Aligned_cols=99  Identities=14%  Similarity=0.100  Sum_probs=62.7

Q ss_pred             cccccCeeeecCCCCceeeeeeeccc---ccEEEEEEcCCCcEE------------EEEeCCCeEEEEe-----------
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHT---HQVLHVSFSHNGRYF------------ATCSKDGYILVWT-----------   55 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~---~~v~~i~~s~~~~~l------------~s~~~d~~i~iw~-----------   55 (111)
                      +++.|++|+|||+.+++++.++.+|.   ..+.+++|+|++.++            ++|+.|+++++||           
T Consensus       198 SgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~  277 (356)
T 2w18_A          198 GTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVML  277 (356)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEE
T ss_pred             EecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEE
Confidence            57899999999999999999998653   356566777766654            2344444455554           


Q ss_pred             ----------------------------------cCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCcccc
Q psy8803          56 ----------------------------------SSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQST  101 (111)
Q Consensus        56 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  101 (111)
                                                        +.+++....   .....-.....++|+|++.++ ++|       +.
T Consensus       278 ~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~t---L~gH~~~vvs~vafSPDG~~L-aSG-------S~  346 (356)
T 2w18_A          278 YCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTAL---LPPVSDQHWSFVKWSGTDSHL-LAG-------QK  346 (356)
T ss_dssp             ECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEE---ECCC--CCCCEEEECSSSSEE-EEE-------CT
T ss_pred             eeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEE---ecCCCCCeEEEEEECCCCCEE-EEE-------EC
Confidence                                              444433321   000110112357999999886 566       88


Q ss_pred             CceEEEeecC
Q psy8803         102 SGEIAVFSLQ  111 (111)
Q Consensus       102 ~~~i~iw~~~  111 (111)
                      |++|+|||+.
T Consensus       347 D~TIklWd~~  356 (356)
T 2w18_A          347 DGNIFVYHYS  356 (356)
T ss_dssp             TSCEEEEEEC
T ss_pred             CCcEEEecCC
Confidence            9999999974

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.79  E-value=1e-18  Score=110.16  Aligned_cols=93  Identities=14%  Similarity=0.026  Sum_probs=74.1

Q ss_pred             eeeecCCCCce----eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           8 YKRLDYHTPIV----ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         8 ~i~iw~~~~~~----~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      .+++|++....    ....+.+|...|.+++|+||+++|++|+.|++|+|||+++.++...   +....-.++++++|+|
T Consensus       246 ~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~---~~~gH~~~V~~v~fSp  322 (365)
T 4h5i_A          246 VLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI---FKQAHSFAITEVTISP  322 (365)
T ss_dssp             EEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE---ETTSSSSCEEEEEECT
T ss_pred             EEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE---ecCcccCCEEEEEECC
Confidence            67888886553    2446678999999999999999999999999999999998776652   2111125678899999


Q ss_pred             CCCEEEEeccccCCccccCceEEEeecC
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++.+| +++       +.|++|+|||+.
T Consensus       323 dg~~l-aS~-------S~D~tvrvw~ip  342 (365)
T 4h5i_A          323 DSTYV-ASV-------SAANTIHIIKLP  342 (365)
T ss_dssp             TSCEE-EEE-------ETTSEEEEEECC
T ss_pred             CCCEE-EEE-------eCCCeEEEEEcC
Confidence            98876 566       899999999973

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.79  E-value=1.8e-18  Score=108.50  Aligned_cols=101  Identities=16%  Similarity=0.102  Sum_probs=81.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.|++|++||+++++++..+.+|...|.+++|+|+++.|++++.|+++++||++..........- . ....+..++
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~-~-~~~~~~~~~  291 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE-S-IIFGASSVD  291 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-T-CCSCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-C-cccceeEEE
Confidence            35778999999999999999999999999999999999999999999999999999876544311100 0 012456789


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..+++ +       +.|+.|++||++
T Consensus       292 ~s~~g~~l~~-g-------~~d~~i~vwd~~  314 (354)
T 2pbi_B          292 FSLSGRLLFA-G-------YNDYTINVWDVL  314 (354)
T ss_dssp             ECTTSSEEEE-E-------ETTSCEEEEETT
T ss_pred             EeCCCCEEEE-E-------ECCCcEEEEECC
Confidence            9999887654 4       679999999973

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.79  E-value=4.7e-19  Score=111.31  Aligned_cols=99  Identities=14%  Similarity=0.052  Sum_probs=72.8

Q ss_pred             cccccCeeeecCCCCceeee----eeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCcee
Q psy8803           2 KSWYEEYKRLDYHTPIVETE----VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~----~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   77 (111)
                      +++.||+|+|||+.+++...    ...+|...|.+++|+|++++|++++.|+.|++||++++.....   .... -..++
T Consensus       110 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~---~~~h-~~~v~  185 (357)
T 4g56_B          110 VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS---YNAH-SSEVN  185 (357)
T ss_dssp             EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEE---ECCC-SSCEE
T ss_pred             EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE---EcCC-CCCEE
Confidence            46789999999998775432    3347999999999999999999999999999999998766542   1111 14567


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +++|+|++..+++++       +.|+.|++||++
T Consensus       186 ~v~~s~~~~~~~~s~-------~~dg~v~~wd~~  212 (357)
T 4g56_B          186 CVAACPGKDTIFLSC-------GEDGRILLWDTR  212 (357)
T ss_dssp             EEEECTTCSSCEEEE-------ETTSCEEECCTT
T ss_pred             EEEEccCCCceeeee-------ccCCceEEEECC
Confidence            888999887666776       789999999974

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.79  E-value=2.5e-18  Score=109.07  Aligned_cols=99  Identities=11%  Similarity=0.102  Sum_probs=81.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      |+++.|++|++||+.+++.+..+.+|...|.+++|+|+++.|++++.|+.+++||++++......    .. -..+..++
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~----~~-~~~v~~~~  213 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL----SI-EDGVTTVA  213 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----EC-SSCEEEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE----Ec-CCCcEEEE
Confidence            35788999999999999999999999999999999999999999999999999999987654311    11 13466788


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|.+..+++++       +.|+.|++||++
T Consensus       214 ~~~~~~~~l~~~-------s~d~~v~iwd~~  237 (393)
T 1erj_A          214 VSPGDGKYIAAG-------SLDRAVRVWDSE  237 (393)
T ss_dssp             ECSTTCCEEEEE-------ETTSCEEEEETT
T ss_pred             EECCCCCEEEEE-------cCCCcEEEEECC
Confidence            998444555666       789999999964

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.79  E-value=3.4e-18  Score=105.07  Aligned_cols=99  Identities=17%  Similarity=0.262  Sum_probs=82.1

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.|+.+++|+..+++....+.+|...|.+++|+|++++|++++.|+.+++||++.......   .... -..+.+++
T Consensus        39 ~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~~-~~~v~~~~  114 (312)
T 4ery_A           39 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT---LKGH-SNYVFCCN  114 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---EECC-SSCEEEEE
T ss_pred             EEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE---EcCC-CCCEEEEE
Confidence            3678899999999999998889999999999999999999999999999999999998765542   1111 14566788


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..++ ++       +.|+.|++||++
T Consensus       115 ~~~~~~~l~-s~-------~~d~~i~iwd~~  137 (312)
T 4ery_A          115 FNPQSNLIV-SG-------SFDESVRIWDVK  137 (312)
T ss_dssp             ECSSSSEEE-EE-------ETTSCEEEEETT
T ss_pred             EcCCCCEEE-EE-------eCCCcEEEEECC
Confidence            899887764 45       689999999974

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.78  E-value=4e-18  Score=104.78  Aligned_cols=99  Identities=14%  Similarity=0.165  Sum_probs=82.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.|+.|++||+.+++.+..+.+|...|.++.|+|++++|++++.|+.|++||++.......   .... -.++..++
T Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~-~~~v~~~~  156 (312)
T 4ery_A           81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---LPAH-SDPVSAVH  156 (312)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE---ECCC-SSCEEEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE---ecCC-CCcEEEEE
Confidence            3567899999999999999999999999999999999999999999999999999998765542   1111 14567788


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..++ ++       +.|+.|++||++
T Consensus       157 ~~~~~~~l~-~~-------~~d~~i~~wd~~  179 (312)
T 4ery_A          157 FNRDGSLIV-SS-------SYDGLCRIWDTA  179 (312)
T ss_dssp             ECTTSSEEE-EE-------ETTSCEEEEETT
T ss_pred             EcCCCCEEE-EE-------eCCCcEEEEECC
Confidence            999888764 45       679999999974

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.78  E-value=2e-18  Score=109.03  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=80.2

Q ss_pred             CcccccCeeeecCCCCceeeeeeeccc-------ccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeec
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHT-------HQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSW   73 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~-------~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~   73 (111)
                      ++++.|++|++||+++++.+..+..+.       ..|.+++|+|++++|++++.|+.|++||.................-
T Consensus       265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~  344 (380)
T 3iz6_a          265 GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHE  344 (380)
T ss_dssp             EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCC
T ss_pred             EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCC
Confidence            467899999999999998877775443       2488999999999999999999999999987665542222211122


Q ss_pred             CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          74 KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .++.+++|+|++..+ ++|       +.|+.|+||++.
T Consensus       345 ~~v~~l~~s~dg~~l-~sg-------s~D~~i~iW~~~  374 (380)
T 3iz6_a          345 GRISCLGLSSDGSAL-CTG-------SWDKNLKIWAFS  374 (380)
T ss_dssp             CCCCEEEECSSSSEE-EEE-------CTTSCEEEEECC
T ss_pred             CceEEEEECCCCCEE-EEe-------eCCCCEEEEecC
Confidence            467788999998876 556       789999999974

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.78  E-value=2e-18  Score=107.84  Aligned_cols=101  Identities=17%  Similarity=0.261  Sum_probs=78.4

Q ss_pred             CcccccCeeeecCCCCc--eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           1 KKSWYEEYKRLDYHTPI--VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      |+++.|+++++|++..+  +.+..+.+|...|.+++|+|++++|++++.|+.+++||++.............. -..+..
T Consensus        77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~  155 (345)
T 3fm0_A           77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH-TQDVKH  155 (345)
T ss_dssp             EEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC-CSCEEE
T ss_pred             EEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc-CCCeEE
Confidence            46788999999998865  467788999999999999999999999999999999999865332211011111 145677


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++|+|++..+ +++       +.|+.|++||+
T Consensus       156 ~~~~p~~~~l-~s~-------s~d~~i~~w~~  179 (345)
T 3fm0_A          156 VVWHPSQELL-ASA-------SYDDTVKLYRE  179 (345)
T ss_dssp             EEECSSSSCE-EEE-------ETTSCEEEEEE
T ss_pred             EEECCCCCEE-EEE-------eCCCcEEEEEe
Confidence            8899988776 455       78999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.78  E-value=7.2e-18  Score=104.76  Aligned_cols=102  Identities=8%  Similarity=0.100  Sum_probs=83.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      ++++.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.|+.|++||++.............. -.++..+
T Consensus        89 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~  167 (366)
T 3k26_A           89 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSA  167 (366)
T ss_dssp             EEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC-SSCEEEE
T ss_pred             EEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc-cCceeEE
Confidence            3577899999999999999999999999999999999 8999999999999999999987655422111111 2567788


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|+|++..+++ +       +.|+.|++||++
T Consensus       168 ~~~~~~~~l~~-~-------~~dg~i~i~d~~  191 (366)
T 3k26_A          168 DYDLLGEKIMS-C-------GMDHSLKLWRIN  191 (366)
T ss_dssp             EECTTSSEEEE-E-------ETTSCEEEEESC
T ss_pred             EECCCCCEEEE-e-------cCCCCEEEEECC
Confidence            99998887654 4       678999999975

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.78  E-value=4.4e-18  Score=107.90  Aligned_cols=99  Identities=14%  Similarity=0.137  Sum_probs=81.7

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.|+.|++||+..++....+.+|.+.|.+++|+|++++|++++.|+.|++||++.......   .... -.++.+++
T Consensus       113 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~---~~~h-~~~v~~~~  188 (420)
T 3vl1_A          113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT---LIGH-RATVTDIA  188 (420)
T ss_dssp             EEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEE---EECC-SSCEEEEE
T ss_pred             EEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceE---EcCC-CCcEEEEE
Confidence            3567899999999999988888889999999999999999999999999999999987654431   1111 24567888


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..++ ++       +.|+.|++||++
T Consensus       189 ~~~~~~~l~-s~-------~~d~~v~iwd~~  211 (420)
T 3vl1_A          189 IIDRGRNVL-SA-------SLDGTIRLWECG  211 (420)
T ss_dssp             EETTTTEEE-EE-------ETTSCEEEEETT
T ss_pred             EcCCCCEEE-EE-------cCCCcEEEeECC
Confidence            999888775 55       689999999974

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.77  E-value=4.3e-18  Score=105.25  Aligned_cols=101  Identities=16%  Similarity=0.239  Sum_probs=75.8

Q ss_pred             CcccccCeeeecCCCCc---eeeeeeecccccEEEEEEcCCC----cEEEEEeCCCeEEEEecCCCceee-eecceeeee
Q psy8803           1 KKSWYEEYKRLDYHTPI---VETEVLTQHTHQVLHVSFSHNG----RYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFS   72 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~s~~~----~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~   72 (111)
                      ++++.|++|++||+...   +++..+.+|...|.+++|+|++    ++|++++.|++|++|+++...... ........ 
T Consensus       183 ~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-  261 (316)
T 3bg1_A          183 ASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF-  261 (316)
T ss_dssp             ECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC-
T ss_pred             EEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC-
Confidence            36788999999999754   4677888999999999999986    889999999999999987521100 00001111 


Q ss_pred             cCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          73 WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      -.++..++|+|++..++ ++       +.|+.|++|++
T Consensus       262 ~~~v~~v~~sp~g~~la-s~-------~~D~~v~lw~~  291 (316)
T 3bg1_A          262 NDVVWHVSWSITANILA-VS-------GGDNKVTLWKE  291 (316)
T ss_dssp             SSCEEEEEECTTTCCEE-EE-------ESSSCEEEEEE
T ss_pred             CCcEEEEEEcCCCCEEE-EE-------cCCCeEEEEEE
Confidence            14567889999987764 44       67999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.77  E-value=2.9e-18  Score=105.16  Aligned_cols=101  Identities=18%  Similarity=0.305  Sum_probs=76.3

Q ss_pred             CcccccCeeeecCCCC--ceeeeeeecccccEEEEEEcCC--CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTP--IVETEVLTQHTHQVLHVSFSHN--GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~--~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~   76 (111)
                      |+++.|++|+|||+..  .+.+..+.+|.+.|.+++|+++  +++|++++.|+++++||++.+.....  ......-.++
T Consensus        25 as~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~--~~~~~h~~~v  102 (297)
T 2pm7_B           25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI--AVHAVHSASV  102 (297)
T ss_dssp             EEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC--EEECCCSSCE
T ss_pred             EEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE--EEeecCCCce
Confidence            4678999999999974  3677889999999999999864  89999999999999999986531110  0001111456


Q ss_pred             eeEEEccC--CCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNES--DTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~--~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++++|+|+  +.. ++++       +.|+.|++||++
T Consensus       103 ~~v~~~p~~~g~~-l~s~-------s~d~~v~~wd~~  131 (297)
T 2pm7_B          103 NSVQWAPHEYGPM-LLVA-------SSDGKVSVVEFK  131 (297)
T ss_dssp             EEEEECCGGGCSE-EEEE-------ETTSEEEEEEBC
T ss_pred             eEEEeCcCCCCcE-EEEE-------ECCCcEEEEEec
Confidence            67888886  445 4566       789999999974

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.77  E-value=6.8e-18  Score=113.42  Aligned_cols=60  Identities=23%  Similarity=0.299  Sum_probs=55.6

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK   61 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~   61 (111)
                      +++.|++|++||+..++....+.+|.+.|.+++|+|++++|++++.|+.|++||++....
T Consensus       536 s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~  595 (694)
T 3dm0_A          536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK  595 (694)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence            567899999999999999999999999999999999999999999999999999987543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.77  E-value=2.7e-18  Score=106.18  Aligned_cols=100  Identities=19%  Similarity=0.261  Sum_probs=76.9

Q ss_pred             CcccccCeeeecCCCCce--eeeeeecccccEEEEEEcC--CCcEEEEEeCCCeEEEEecCCCc--eeeeecceeeeecC
Q psy8803           1 KKSWYEEYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSH--NGRYFATCSKDGYILVWTSSYPS--KVKYSHDMKTFSWK   74 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~--~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~   74 (111)
                      |+++.|++|++||+..+.  .+..+.+|.+.|.+++|+|  ++++|++++.|+++++||++.+.  ....   .... -.
T Consensus        29 asgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~---~~~h-~~  104 (316)
T 3bg1_A           29 ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE---HAGH-DS  104 (316)
T ss_dssp             EEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE---ECCC-SS
T ss_pred             EEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE---ccCC-CC
Confidence            467899999999998764  5678899999999999986  48999999999999999998753  2210   1111 14


Q ss_pred             ceeeEEEccCC-CEEEEeccccCCccccCceEEEeecC
Q psy8803          75 YTQYSQFNESD-TLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        75 ~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++++++|+|+. ..+++++       +.|+.|++||++
T Consensus       105 ~V~~v~~~p~~~g~~lasg-------s~D~~i~lwd~~  135 (316)
T 3bg1_A          105 SVNSVCWAPHDYGLILACG-------SSDGAISLLTYT  135 (316)
T ss_dssp             CCCEEEECCTTTCSCEEEE-------CSSSCEEEEEEC
T ss_pred             ceEEEEECCCCCCcEEEEE-------cCCCCEEEEecC
Confidence            56778889873 3445666       889999999974

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.76  E-value=8.2e-18  Score=105.10  Aligned_cols=101  Identities=16%  Similarity=0.133  Sum_probs=76.0

Q ss_pred             CcccccCeeeecCCCCceee--e-eeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCcee
Q psy8803           1 KKSWYEEYKRLDYHTPIVET--E-VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~--~-~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   77 (111)
                      |+++.|++|+|||...+...  . ...+|...|.+++|+|++++|++++.|+.+++|+......... ...... -.++.
T Consensus        32 as~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~-~~~~~h-~~~v~  109 (345)
T 3fm0_A           32 ASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECV-TTLEGH-ENEVK  109 (345)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEE-EEECCC-SSCEE
T ss_pred             EEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEE-EEccCC-CCCce
Confidence            46789999999999876532  2 2368999999999999999999999999999999876532110 011111 14567


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +++|+|++..+ +++       +.|+.|++||++
T Consensus       110 ~v~~sp~~~~l-~s~-------s~D~~v~iwd~~  135 (345)
T 3fm0_A          110 SVAWAPSGNLL-ATC-------SRDKSVWVWEVD  135 (345)
T ss_dssp             EEEECTTSSEE-EEE-------ETTSCEEEEEEC
T ss_pred             EEEEeCCCCEE-EEE-------ECCCeEEEEECC
Confidence            88899988776 455       789999999974

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.76  E-value=7.2e-18  Score=113.31  Aligned_cols=103  Identities=23%  Similarity=0.273  Sum_probs=80.9

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.|++|++||+.+++.+..+.+|...|.+++|+|+++.|++++.|++|++||............... .-..+.+++
T Consensus       446 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~  524 (694)
T 3dm0_A          446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG-HRDWVSCVR  524 (694)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTS-CSSCEEEEE
T ss_pred             EEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCC-CCCcEEEEE
Confidence            3678899999999999999999999999999999999999999999999999999875433221111111 113466788


Q ss_pred             EccCCC-EEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDT-LLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++. .+++++       +.|+.|++||++
T Consensus       525 ~~~~~~~~~l~s~-------s~d~~v~vwd~~  549 (694)
T 3dm0_A          525 FSPNTLQPTIVSA-------SWDKTVKVWNLS  549 (694)
T ss_dssp             ECSCSSSCEEEEE-------ETTSCEEEEETT
T ss_pred             EeCCCCcceEEEE-------eCCCeEEEEECC
Confidence            898763 455666       889999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.76  E-value=2.2e-17  Score=101.94  Aligned_cols=96  Identities=16%  Similarity=0.156  Sum_probs=79.5

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +++.|++|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.|+.|++||++........   ..  -..+..++|
T Consensus       190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~---~~--~~~v~~~~~  264 (340)
T 4aow_A          190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL---DG--GDIINALCF  264 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE---EC--SSCEEEEEE
T ss_pred             EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee---cC--CceEEeeec
Confidence            4678999999999999999999999999999999999999999999999999999987655421   11  135667888


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|++..+.+         +.|+.|++||++
T Consensus       265 ~~~~~~~~~---------~~d~~i~iwd~~  285 (340)
T 4aow_A          265 SPNRYWLCA---------ATGPSIKIWDLE  285 (340)
T ss_dssp             CSSSSEEEE---------EETTEEEEEETT
T ss_pred             CCCCceeec---------cCCCEEEEEECC
Confidence            988765544         568999999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.76  E-value=4.2e-18  Score=107.96  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=82.1

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeee-------ecceeeeec
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKY-------SHDMKTFSW   73 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~-------~~~~~~~~~   73 (111)
                      ++++.|++|++||+.+++.+..+.+|...|.+++|+|+++.|++++.|+.+++||++.......       ...+..+.+
T Consensus       155 ~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  234 (420)
T 3vl1_A          155 ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL  234 (420)
T ss_dssp             EEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred             EEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence            3578899999999999999999999999999999999999999999999999999998655431       122333322


Q ss_pred             -------------CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          74 -------------KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        74 -------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                                   .++..++|+|++..+ +++       +.++.|++||++
T Consensus       235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~-------~~dg~i~i~d~~  277 (420)
T 3vl1_A          235 FVGTDRQLHEISTSKKNNLEFGTYGKYV-IAG-------HVSGVITVHNVF  277 (420)
T ss_dssp             EECCCSSCGGGCCCCCCTTCSSCTTEEE-EEE-------ETTSCEEEEETT
T ss_pred             ecCCcceeeecccCcccceEEcCCCCEE-EEE-------cCCCeEEEEECC
Confidence                         345567788887666 555       679999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.75  E-value=1.8e-17  Score=110.19  Aligned_cols=103  Identities=17%  Similarity=0.162  Sum_probs=80.8

Q ss_pred             CcccccCeeeecCCCCceeeeeee-------cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeec-------
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLT-------QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSH-------   66 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~-------~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-------   66 (111)
                      |+++.|++|++||..+++.+..+.       +|.+.|.+++|+|++++|++++.|+++++||+++........       
T Consensus       206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~  285 (611)
T 1nr0_A          206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED  285 (611)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred             EEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence            467899999999999888887774       799999999999999999999999999999998765432100       


Q ss_pred             c--------------------------------eeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          67 D--------------------------------MKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        67 ~--------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .                                .....-.+++.++|+|++..++ ++       +.|+.|++||++
T Consensus       286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~-s~-------s~D~~v~~Wd~~  354 (611)
T 1nr0_A          286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF-SA-------DAEGHINSWDIS  354 (611)
T ss_dssp             CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EE-------ETTSCEEEEETT
T ss_pred             eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEE-EE-------eCCCcEEEEECC
Confidence            0                                0001113577899999988875 45       689999999974

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.75  E-value=7.9e-18  Score=104.91  Aligned_cols=99  Identities=12%  Similarity=0.079  Sum_probs=77.1

Q ss_pred             cccccCeeeecCCCCceeeeeee-cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLT-QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +++.|++|++||+.+++.+..+. .|...+.+++|+|++.+|++|+.|+.|++||+++.......  .....-.+++.++
T Consensus       144 s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~--~~~~h~~~v~~l~  221 (343)
T 3lrv_A          144 WADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR--FPVDEEAKIKEVK  221 (343)
T ss_dssp             EEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEE--CCCCTTSCEEEEE
T ss_pred             EEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccE--EeccCCCCEEEEE
Confidence            57889999999999888766553 45568999999999999999999999999999987654111  1110125778899


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..++++        + ++.|++||++
T Consensus       222 fs~~g~~l~s~--------~-~~~v~iwd~~  243 (343)
T 3lrv_A          222 FADNGYWMVVE--------C-DQTVVCFDLR  243 (343)
T ss_dssp             ECTTSSEEEEE--------E-SSBEEEEETT
T ss_pred             EeCCCCEEEEE--------e-CCeEEEEEcC
Confidence            99999887653        3 4589999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.75  E-value=9.5e-18  Score=110.03  Aligned_cols=95  Identities=18%  Similarity=0.222  Sum_probs=76.7

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      |+++.|++|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||... +...   ....+. .++..++
T Consensus       483 as~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~-~~~~---~~~~h~-~~v~~~~  556 (577)
T 2ymu_A          483 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQ---TLTGHS-SSVWGVA  556 (577)
T ss_dssp             EEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-CEEE---EEECCS-SCEEEEE
T ss_pred             EEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC-CEEE---EEcCCC-CCEEEEE
Confidence            35678999999996 5788889999999999999999999999999999999999643 3332   112221 4667889


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEee
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      |+|++.+++ ++       +.|+.|++||
T Consensus       557 fs~dg~~l~-s~-------~~D~~i~~Wd  577 (577)
T 2ymu_A          557 FSPDGQTIA-SA-------SSDKTVKLWN  577 (577)
T ss_dssp             ECTTSSCEE-EE-------ETTSCEEEEC
T ss_pred             EcCCCCEEE-EE-------eCCCEEEEeC
Confidence            999998875 45       6799999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.2e-17  Score=103.83  Aligned_cols=99  Identities=18%  Similarity=0.215  Sum_probs=75.7

Q ss_pred             CcccccCeeeecCCCCc----eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCc--eeeeecceeeeecC
Q psy8803           1 KKSWYEEYKRLDYHTPI----VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS--KVKYSHDMKTFSWK   74 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~   74 (111)
                      |+++.|++|++||+...    +.+..+.+|...|.+++|+|++++|++++.|++|++||.+...  +..   ..... -.
T Consensus       123 as~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~---~~~~h-~~  198 (330)
T 2hes_X          123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVA---VLNGH-EG  198 (330)
T ss_dssp             EEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEE---EECCC-SS
T ss_pred             EEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEE---EccCC-CC
Confidence            46788999999999432    5667788999999999999999999999999999999987642  222   11111 14


Q ss_pred             ceeeEEEccCC-CEEEEeccccCCccccCceEEEeec
Q psy8803          75 YTQYSQFNESD-TLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        75 ~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++..++|+|+. ...++++       +.|++|++||+
T Consensus       199 ~v~~~~~~~~~~~~~l~s~-------s~D~~v~iw~~  228 (330)
T 2hes_X          199 TVWSSDFDKTEGVFRLCSG-------SDDSTVRVWKY  228 (330)
T ss_dssp             CEEEEEECCSSSSCEEEEE-------ETTSCEEEEEE
T ss_pred             cEEEEEecCCCCeeEEEEE-------eCCCeEEEEEe
Confidence            56678888873 3445666       78999999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.75  E-value=2.2e-17  Score=101.25  Aligned_cols=103  Identities=10%  Similarity=0.112  Sum_probs=77.1

Q ss_pred             CcccccCeeeecCCCCce--eeeeeecccccEEEEEEcCC-------------CcEEEEEeCCCeEEEEecCCCceee-e
Q psy8803           1 KKSWYEEYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSHN-------------GRYFATCSKDGYILVWTSSYPSKVK-Y   64 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~~-------------~~~l~s~~~d~~i~iw~~~~~~~~~-~   64 (111)
                      ++++.|++|++||++.+.  ....+.+|...|.+++|+|+             ++.|++++.|++|++||++...... .
T Consensus       117 ~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~  196 (297)
T 2pm7_B          117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  196 (297)
T ss_dssp             EEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             EEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE
Confidence            357789999999998653  24567789999999999997             5799999999999999997654211 1


Q ss_pred             ecceeeeecCceeeEEEccCC--CEEEEeccccCCccccCceEEEeecC
Q psy8803          65 SHDMKTFSWKYTQYSQFNESD--TLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        65 ~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ......+ -.+++.++|+|++  ..+++++       +.|++|+|||++
T Consensus       197 ~~~l~~H-~~~V~~v~~sp~~~~~~~las~-------s~D~~v~iWd~~  237 (297)
T 2pm7_B          197 ESTLEGH-SDWVRDVAWSPTVLLRSYMASV-------SQDRTCIIWTQD  237 (297)
T ss_dssp             EEEECCC-SSCEEEEEECCCCSSSEEEEEE-------ETTSCEEEEEES
T ss_pred             EEEecCC-CCceEEEEECCCCCCceEEEEE-------ECCCcEEEEEeC
Confidence            0011111 2457788899985  4666777       889999999974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.75  E-value=1.3e-17  Score=105.67  Aligned_cols=101  Identities=13%  Similarity=0.052  Sum_probs=80.8

Q ss_pred             CcccccCeeeecCCCCc-------eeeeeeecccccEEEEEEcCCC-cEEEEEeCCCeEEEEecCCCceeeeecceeeee
Q psy8803           1 KKSWYEEYKRLDYHTPI-------VETEVLTQHTHQVLHVSFSHNG-RYFATCSKDGYILVWTSSYPSKVKYSHDMKTFS   72 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~   72 (111)
                      ++++.||+|++||+..+       +++..+.+|...|.+++|+|++ ++|++++.|+.|++||++......... .... 
T Consensus        98 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~-  175 (402)
T 2aq5_A           98 ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-PDVH-  175 (402)
T ss_dssp             EEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-TTTC-
T ss_pred             EEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-cCCC-
Confidence            46788999999999987       6678889999999999999997 799999999999999999876554210 0111 


Q ss_pred             cCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          73 WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      -..+++++|+|++..+++ +       +.|+.|++||++
T Consensus       176 ~~~v~~~~~~~~~~~l~~-~-------~~d~~i~iwd~~  206 (402)
T 2aq5_A          176 PDTIYSVDWSRDGALICT-S-------CRDKRVRVIEPR  206 (402)
T ss_dssp             CSCEEEEEECTTSSCEEE-E-------ETTSEEEEEETT
T ss_pred             CCceEEEEECCCCCEEEE-E-------ecCCcEEEEeCC
Confidence            246778899998877654 4       679999999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.74  E-value=1.4e-17  Score=106.68  Aligned_cols=101  Identities=10%  Similarity=-0.028  Sum_probs=76.4

Q ss_pred             CcccccCeeeecCCCCce--eeeeeecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCcee
Q psy8803           1 KKSWYEEYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   77 (111)
                      |+++.||+|+|||+..+.  ....+.+|.+.|.+++|+| ++++|++++.|++|++||++..........-  .....+.
T Consensus       136 asGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~  213 (435)
T 4e54_B          136 AVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSD--TINIWFC  213 (435)
T ss_dssp             EEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCS--SCSCCCC
T ss_pred             EEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccC--CCCccEE
Confidence            467899999999998664  4455678999999999998 6899999999999999999875432211000  0012345


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +++|+|++..+ ++|       +.++.|++||++
T Consensus       214 ~~~~~~~~~~l-~~g-------~~dg~i~~wd~~  239 (435)
T 4e54_B          214 SLDVSASSRMV-VTG-------DNVGNVILLNMD  239 (435)
T ss_dssp             CEEEETTTTEE-EEE-------CSSSBEEEEESS
T ss_pred             EEEECCCCCEE-EEE-------eCCCcEeeeccC
Confidence            78899988776 455       789999999974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.74  E-value=4e-17  Score=104.21  Aligned_cols=100  Identities=7%  Similarity=0.104  Sum_probs=79.0

Q ss_pred             cccccCeeeecCCCCceeeeeeec--ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQ--HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~--~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      +++.|+.|++||+++++.+..+.+  |.+.|.+++|+|++++|++++.|+.|++||++......... . . .-.+++.+
T Consensus       187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~-~-~~~~v~~~  263 (437)
T 3gre_A          187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS-F-G-DHAPITHV  263 (437)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB-C-T-TCEEEEEE
T ss_pred             EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe-c-C-CCCceEEE
Confidence            567899999999999999999988  89999999999999999999999999999999866554210 0 0 01245567


Q ss_pred             EEccC---CCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNES---DTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~---~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +++|.   +..+++++       +.|+.|++||++
T Consensus       264 ~~~~~~s~~~~~l~s~-------~~dg~i~iwd~~  291 (437)
T 3gre_A          264 EVCQFYGKNSVIVVGG-------SSKTFLTIWNFV  291 (437)
T ss_dssp             EECTTTCTTEEEEEEE-------STTEEEEEEETT
T ss_pred             EeccccCCCccEEEEE-------cCCCcEEEEEcC
Confidence            66653   34456777       889999999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.74  E-value=6.4e-17  Score=106.13  Aligned_cols=96  Identities=16%  Similarity=0.190  Sum_probs=77.4

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      |+++.|++|+|||. +++++..+.+|.+.|.+++|+||+++|++++.|+.|++||... +....   .... -.+++.++
T Consensus        32 as~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~-~~~~~---~~~~-~~~v~~~~  105 (577)
T 2ymu_A           32 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQT---LTGH-SSSVRGVA  105 (577)
T ss_dssp             EEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEE---ECCC-SSCEEEEE
T ss_pred             EEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC-CEEEE---EECC-CCCEEEEE
Confidence            46788999999995 5788899999999999999999999999999999999999754 33321   1111 24677889


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      |+|++..+++ +       +.|+.+++|+.
T Consensus       106 ~s~d~~~l~~-~-------~~d~~~~~~~~  127 (577)
T 2ymu_A          106 FSPDGQTIAS-A-------SDDKTVKLWNR  127 (577)
T ss_dssp             ECTTSSEEEE-E-------ETTSCEEEEET
T ss_pred             ECCCCCEEEE-E-------cCCCceeeccc
Confidence            9999888754 4       67889999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.74  E-value=5e-17  Score=100.93  Aligned_cols=98  Identities=15%  Similarity=0.116  Sum_probs=77.1

Q ss_pred             CcccccCeeeecCCCC-ceee-eeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           1 KKSWYEEYKRLDYHTP-IVET-EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~-~~~~-~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      ++++.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|++++.|+.+++||++.......    ... -.++..
T Consensus        58 ~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~----~~~-~~~v~~  132 (368)
T 3mmy_A           58 IAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI----AQH-DAPVKT  132 (368)
T ss_dssp             EEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE----EEC-SSCEEE
T ss_pred             EEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee----ccc-cCceEE
Confidence            3578899999999986 4444 67889999999999999999999999999999999998765541    111 145667


Q ss_pred             EEE--ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          79 SQF--NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        79 v~~--~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++|  +|++..+ +++       +.|+.|++||++
T Consensus       133 ~~~~~~~~~~~l-~~~-------~~dg~i~vwd~~  159 (368)
T 3mmy_A          133 IHWIKAPNYSCV-MTG-------SWDKTLKFWDTR  159 (368)
T ss_dssp             EEEEECSSCEEE-EEE-------ETTSEEEEECSS
T ss_pred             EEEEeCCCCCEE-EEc-------cCCCcEEEEECC
Confidence            777  6666554 555       789999999974

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.1e-16  Score=97.75  Aligned_cols=96  Identities=15%  Similarity=0.190  Sum_probs=79.0

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +++.|+.|++||+++++.+..+.+|...|.+++|+|++ .|++++.|+.+++||++.......   .. ..-.++..++|
T Consensus       200 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~---~~-~~~~~i~~~~~  274 (313)
T 3odt_A          200 SCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQV---IT-LPAISIWSVDC  274 (313)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEE---EE-CSSSCEEEEEE
T ss_pred             EccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEE---Ee-ccCceEEEEEE
Confidence            56789999999999999999999999999999999999 588999999999999998765542   11 11246778899


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|++..+ + +       +.|+.|++||++
T Consensus       275 ~~~~~~~-~-~-------~~dg~i~iw~~~  295 (313)
T 3odt_A          275 MSNGDII-V-G-------SSDNLVRIFSQE  295 (313)
T ss_dssp             CTTSCEE-E-E-------ETTSCEEEEESC
T ss_pred             ccCCCEE-E-E-------eCCCcEEEEeCC
Confidence            9988743 3 4       679999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.73  E-value=8.9e-17  Score=103.25  Aligned_cols=99  Identities=16%  Similarity=0.182  Sum_probs=80.1

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.||+|++||+.+++.+..+.+|.+.|.+++|+|++ .+++++.|+.|++||++++.....   .... -.++.+++
T Consensus       136 ~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~---~~~h-~~~v~~l~  210 (464)
T 3v7d_B          136 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV---FEGH-NSTVRCLD  210 (464)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEE---ECCC-SSCEEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEE---ECCC-CCccEEEE
Confidence            467899999999999999999999999999999999988 999999999999999998765542   1111 24566777


Q ss_pred             Ecc-CCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNE-SDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~-~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |++ ++..+++++       +.|+.|++||++
T Consensus       211 ~~~~~~~~~l~s~-------s~d~~i~vwd~~  235 (464)
T 3v7d_B          211 IVEYKNIKYIVTG-------SRDNTLHVWKLP  235 (464)
T ss_dssp             EEESSSCEEEEEE-------ETTSCEEEEECC
T ss_pred             EecCCCCCEEEEE-------cCCCcEEEeeCC
Confidence            776 344556777       789999999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.73  E-value=5.5e-17  Score=102.13  Aligned_cols=103  Identities=14%  Similarity=0.084  Sum_probs=81.8

Q ss_pred             ccccc---CeeeecCCCCceeeeeeec-------------ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeee
Q psy8803           2 KSWYE---EYKRLDYHTPIVETEVLTQ-------------HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYS   65 (111)
Q Consensus         2 ~~~~d---~~i~iw~~~~~~~~~~~~~-------------~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~   65 (111)
                      +++.|   +.|++||+.+++.+..+.+             |...|.+++|+|++++|++++.|+.|++||++........
T Consensus       250 ~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          250 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL  329 (397)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Confidence            45677   9999999999999999988             9999999999999999999999999999999987655421


Q ss_pred             c-cee--ee--------------ecCceeeEEEccCCC---------EEEEeccccCCccccCceEEEeecC
Q psy8803          66 H-DMK--TF--------------SWKYTQYSQFNESDT---------LLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        66 ~-~~~--~~--------------~~~~~~~v~~~~~~~---------~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      . ...  ..              .-.+++.++|+|++.         .+++++       +.|+.|++||++
T Consensus       330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~-------~~dg~i~iw~~~  394 (397)
T 1sq9_A          330 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV-------CLDRSIRWFREA  394 (397)
T ss_dssp             ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEE-------ETTTEEEEEEEE
T ss_pred             ecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEe-------cCCCcEEEEEcC
Confidence            1 000  11              025678899999873         345666       789999999974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.5e-17  Score=114.83  Aligned_cols=102  Identities=9%  Similarity=-0.015  Sum_probs=75.0

Q ss_pred             CcccccCeeeecCCCCceee----ee--ee-----cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeee-----
Q psy8803           1 KKSWYEEYKRLDYHTPIVET----EV--LT-----QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKY-----   64 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~----~~--~~-----~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~-----   64 (111)
                      |+++.|++|++||+..++..    ..  +.     +|...|.+++|+||+++|++++.|+++++|++...+...+     
T Consensus       451 aSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~  530 (902)
T 2oaj_A          451 ITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPE  530 (902)
T ss_dssp             EEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------
T ss_pred             EEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCC
Confidence            46789999999999876421    11  11     7889999999999999999999999999999975421000     


Q ss_pred             ------------------------------------ecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEe
Q psy8803          65 ------------------------------------SHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVF  108 (111)
Q Consensus        65 ------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw  108 (111)
                                                          ........-.+++.++|+|++  ++++|       +.|++|++|
T Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG--~lAsg-------s~D~tv~lw  601 (902)
T 2oaj_A          531 SGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG--FVGIA-------YAAGSLMLI  601 (902)
T ss_dssp             -------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS--EEEEE-------ETTSEEEEE
T ss_pred             CcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc--EEEEE-------eCCCcEEEE
Confidence                                                000111122567899999999  45666       889999999


Q ss_pred             ecC
Q psy8803         109 SLQ  111 (111)
Q Consensus       109 ~~~  111 (111)
                      |++
T Consensus       602 d~~  604 (902)
T 2oaj_A          602 DRR  604 (902)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            974

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.72  E-value=1.7e-16  Score=97.15  Aligned_cols=100  Identities=14%  Similarity=0.165  Sum_probs=74.9

Q ss_pred             cccCeeeecCCCCceeeeeee--cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----eecceeeee-----
Q psy8803           4 WYEEYKRLDYHTPIVETEVLT--QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTFS-----   72 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~-----   72 (111)
                      +.|++|+|||+.+++.+..++  +|...|.+++|+|++++|++|+.|+.|++|++++++...    |...+....     
T Consensus        42 g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~  121 (318)
T 4ggc_A           42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI  121 (318)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTE
T ss_pred             EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCE
Confidence            358999999999998777665  677889999999999999999999999999998764432    111111100     


Q ss_pred             ----------------------------cCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          73 ----------------------------WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        73 ----------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                                                  ...+..+++.+.+..++ ++       +.|+.|++||++
T Consensus       122 l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~-------~~d~~i~iwd~~  180 (318)
T 4ggc_A          122 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA-SG-------GNDNLVNVWPSA  180 (318)
T ss_dssp             EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE-EE-------ETTSCEEEEESS
T ss_pred             EEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEE-EE-------ecCcceeEEECC
Confidence                                        11235667888887764 45       679999999974

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.72  E-value=9.6e-17  Score=98.67  Aligned_cols=102  Identities=11%  Similarity=0.121  Sum_probs=77.5

Q ss_pred             CcccccCeeeecCCCCc----eeeeeeecccccEEEEEEcC--CCcEEEEEeCCCeEEEEecCCCcee------eeecce
Q psy8803           1 KKSWYEEYKRLDYHTPI----VETEVLTQHTHQVLHVSFSH--NGRYFATCSKDGYILVWTSSYPSKV------KYSHDM   68 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~i~~s~--~~~~l~s~~~d~~i~iw~~~~~~~~------~~~~~~   68 (111)
                      |+++.||.|++||+..+    +....+.+|...|.+++|+|  ++++|++++.|+.+++||++.....      ......
T Consensus        27 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  106 (351)
T 3f3f_A           27 ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL  106 (351)
T ss_dssp             EEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE
T ss_pred             EEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee
Confidence            46788999999999866    46677789999999999999  6999999999999999999875211      000011


Q ss_pred             eeeecCceeeEEEccC--CCEEEEeccccCCccccCceEEEeecC
Q psy8803          69 KTFSWKYTQYSQFNES--DTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        69 ~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .. .-.++..++|+|+  +..++ ++       +.|+.|++||++
T Consensus       107 ~~-~~~~v~~~~~~~~~~~~~l~-~~-------~~dg~v~iwd~~  142 (351)
T 3f3f_A          107 ND-SKGSLYSVKFAPAHLGLKLA-CL-------GNDGILRLYDAL  142 (351)
T ss_dssp             CC-CSSCEEEEEECCGGGCSEEE-EE-------ETTCEEEEEECS
T ss_pred             cc-cCCceeEEEEcCCCCCcEEE-Ee-------cCCCcEEEecCC
Confidence            11 1245778889998  76664 44       679999999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.72  E-value=5.4e-18  Score=106.28  Aligned_cols=99  Identities=13%  Similarity=0.180  Sum_probs=74.1

Q ss_pred             CcccccCeeeecCCCCc--eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCc---eeeeecceeeeecCc
Q psy8803           1 KKSWYEEYKRLDYHTPI--VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS---KVKYSHDMKTFSWKY   75 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~~~~~   75 (111)
                      |+++.|+.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|+.+++||+....   ....   .... -.+
T Consensus        27 ~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~---~~~~-~~~  102 (377)
T 3dwl_C           27 VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLV---LLRL-NRA  102 (377)
T ss_dssp             ECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEE---CCCC-SSC
T ss_pred             EEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeE---eccc-CCc
Confidence            46678999999999987  7888889999999999999999999999999999999998755   1111   1111 145


Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.+++|+|++..++ ++       +.|+.|++||++
T Consensus       103 v~~~~~~~~~~~l~-~~-------~~d~~i~iwd~~  130 (377)
T 3dwl_C          103 ATFVRWSPNEDKFA-VG-------SGARVISVCYFE  130 (377)
T ss_dssp             EEEEECCTTSSCCE-EE-------ESSSCEEECCC-
T ss_pred             eEEEEECCCCCEEE-EE-------ecCCeEEEEEEC
Confidence            66788888887764 44       679999999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.72  E-value=1.3e-17  Score=103.41  Aligned_cols=102  Identities=16%  Similarity=0.153  Sum_probs=79.0

Q ss_pred             cccccCeeeecCCCCceeeeeee-----cccccEEEEEEcCCCc-EEEEEeCCCeEEEEecCCCcee-------------
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLT-----QHTHQVLHVSFSHNGR-YFATCSKDGYILVWTSSYPSKV-------------   62 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~-----~~~~~v~~i~~s~~~~-~l~s~~~d~~i~iw~~~~~~~~-------------   62 (111)
                      +++.||.|++||+++++....+.     +|...|.+++|+|+++ +|++++.|+.+++||++.....             
T Consensus       229 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~  308 (357)
T 3i2n_A          229 ATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA  308 (357)
T ss_dssp             EEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCC
T ss_pred             EECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccc
Confidence            56789999999998876655554     8999999999999988 8999999999999999754221             


Q ss_pred             ---eeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          63 ---KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        63 ---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                         ......... -.++..++|+|++..+++++       +.|+.|++||++
T Consensus       309 ~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~s~-------~~d~~i~iw~~~  352 (357)
T 3i2n_A          309 GSVSLLQNVTLS-TQPISSLDWSPDKRGLCVCS-------SFDQTVRVLIVT  352 (357)
T ss_dssp             CEEEEEEEEECC-SSCEEEEEECSSSTTEEEEE-------ETTSEEEEEEEC
T ss_pred             cccceeeccccC-CCCeeEEEEcCCCCeEEEEe-------cCCCcEEEEECC
Confidence               000011111 24677899999999887677       889999999974

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.9e-17  Score=108.89  Aligned_cols=100  Identities=11%  Similarity=0.034  Sum_probs=75.9

Q ss_pred             CcccccCeeeecCCCCc-eeeeeeecccccEEEE--EEcCCC-cEEEEEeCCCeEEEEecCCCceeeeecceeee-ecCc
Q psy8803           1 KKSWYEEYKRLDYHTPI-VETEVLTQHTHQVLHV--SFSHNG-RYFATCSKDGYILVWTSSYPSKVKYSHDMKTF-SWKY   75 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~i--~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~~   75 (111)
                      ++++.||+|++||+.++ .+...+.+|...|.++  .|+|++ ++|++++.|+++++||++.......   .... ....
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~---~~~~~~~~~  357 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT---TVSRFRGSN  357 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE---EEEECSCCS
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc---cccccccCc
Confidence            46889999999999876 4556688999999999  578887 8999999999999999987543221   0000 0012


Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.+++|+|++..+ +++       +.|++|++||++
T Consensus       358 v~~v~fsp~~~~l-~s~-------~~d~tv~lwd~~  385 (524)
T 2j04_B          358 LVPVVYCPQIYSY-IYS-------DGASSLRAVPSR  385 (524)
T ss_dssp             CCCEEEETTTTEE-EEE-------CSSSEEEEEETT
T ss_pred             ccceEeCCCcCeE-EEe-------CCCCcEEEEECc
Confidence            4578999988775 444       678899999975

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.72  E-value=4.5e-18  Score=111.79  Aligned_cols=98  Identities=9%  Similarity=0.045  Sum_probs=78.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccc--cEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTH--QVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      |+++.|++|+|||+++++....+.+|..  .|.+++|+|+++.|++++.|+++++||++...+...   .... -.++++
T Consensus       327 aS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~---l~gH-~~~V~s  402 (524)
T 2j04_B          327 STVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP---LVSR-ETTITA  402 (524)
T ss_dssp             EEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE---EEEC-SSCEEE
T ss_pred             EEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee---eecC-CCceEE
Confidence            4788999999999998887777777753  588999999999999999999999999988654331   1111 246677


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++|+|++..+ ++|       +.|++|++||+
T Consensus       403 va~Sp~g~~l-~Sg-------s~Dgtv~lwd~  426 (524)
T 2j04_B          403 IGVSRLHPMV-LAG-------SADGSLIITNA  426 (524)
T ss_dssp             EECCSSCCBC-EEE-------ETTTEEECCBS
T ss_pred             EEeCCCCCeE-EEE-------ECCCEEEEEec
Confidence            8889988765 566       78999999986

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.72  E-value=1.1e-16  Score=101.54  Aligned_cols=101  Identities=11%  Similarity=0.108  Sum_probs=80.8

Q ss_pred             cccccCeeeecCCC-CceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHT-PIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +++.|+.|++||++ .+..+..+.+|.+.|.+++|+|++++|++++.|+.+++||++........   ... -.++..++
T Consensus       191 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~---~~~-~~~v~~~~  266 (401)
T 4aez_A          191 SGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK---TNH-NAAVKAVA  266 (401)
T ss_dssp             EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE---CCC-SSCCCEEE
T ss_pred             EEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe---cCC-cceEEEEE
Confidence            56789999999998 56678888899999999999999999999999999999999986655421   111 14567888


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..+++++.     ++.|+.|++||++
T Consensus       267 ~~p~~~~ll~~~~-----gs~d~~i~i~d~~  292 (401)
T 4aez_A          267 WCPWQSNLLATGG-----GTMDKQIHFWNAA  292 (401)
T ss_dssp             ECTTSTTEEEEEC-----CTTTCEEEEEETT
T ss_pred             ECCCCCCEEEEec-----CCCCCEEEEEECC
Confidence            9998777777650     0379999999974

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=6.8e-17  Score=100.70  Aligned_cols=101  Identities=7%  Similarity=0.054  Sum_probs=76.0

Q ss_pred             CcccccCeeeecCCCCceee-eeeec-ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCce--
Q psy8803           1 KKSWYEEYKRLDYHTPIVET-EVLTQ-HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYT--   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~-~~~~~-~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~--   76 (111)
                      |+++.||.|++||+++++.+ ..+.+ |.+.|.+++|+|++.+|++++.+ .|++||++............... .++  
T Consensus       186 asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~-~~~~~  263 (343)
T 3lrv_A          186 ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPE-FKTGT  263 (343)
T ss_dssp             EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC------CC
T ss_pred             EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeeccccccc-ccccc
Confidence            35689999999999998877 77887 99999999999999999999955 99999998765432111100000 111  


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ..++|+|++.++++.+       +.++.|++|++
T Consensus       264 ~~~~~~~~g~~l~~~s-------~~d~~i~v~~~  290 (343)
T 3lrv_A          264 VTYDIDDSGKNMIAYS-------NESNSLTIYKF  290 (343)
T ss_dssp             EEEEECTTSSEEEEEE-------TTTTEEEEEEE
T ss_pred             eEEEECCCCCEEEEec-------CCCCcEEEEEE
Confidence            3589999999887654       44888999986

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.72  E-value=5.8e-17  Score=102.73  Aligned_cols=103  Identities=16%  Similarity=0.114  Sum_probs=76.3

Q ss_pred             cccccCeeeecCCCCc----eeeeeeecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCceeee-ecce--eeeec
Q psy8803           2 KSWYEEYKRLDYHTPI----VETEVLTQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPSKVKY-SHDM--KTFSW   73 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~--~~~~~   73 (111)
                      +++.||.|++|++...    ..+..+.+|.+.|.+++|+| ++++|++++.|+.|++|++........ ...+  ....-
T Consensus        52 ~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~  131 (402)
T 2aq5_A           52 EASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT  131 (402)
T ss_dssp             CCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS
T ss_pred             EEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC
Confidence            4678999999999654    23456778999999999999 899999999999999999987522100 0001  11112


Q ss_pred             CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          74 KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..+.+++|+|++..+++++       +.|+.|++||++
T Consensus       132 ~~v~~~~~~p~~~~~l~s~-------~~dg~i~iwd~~  162 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSA-------GCDNVILVWDVG  162 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEE-------ETTSCEEEEETT
T ss_pred             CeEEEEEECcCCCCEEEEE-------cCCCEEEEEECC
Confidence            4567888999885455666       789999999974

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.72  E-value=1.7e-17  Score=106.34  Aligned_cols=101  Identities=19%  Similarity=0.097  Sum_probs=76.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCc-EEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR-YFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      ++++.||+|++||++ ++.+..+.+|...|.+++|+|++. +|++++.|+.|++||++.............. -.+++++
T Consensus       225 ~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~  302 (435)
T 4e54_B          225 VTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH-RHPVNAA  302 (435)
T ss_dssp             EEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC-SSCEEEC
T ss_pred             EEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeec-cccccce
Confidence            356789999999987 566778899999999999999865 7889999999999999875432210001111 1356677


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|+|++..++ ++       +.|+.|+|||++
T Consensus       303 ~~spdg~~l~-s~-------~~D~~i~iwd~~  326 (435)
T 4e54_B          303 CFSPDGARLL-TT-------DQKSEIRVYSAS  326 (435)
T ss_dssp             CBCTTSSEEE-EE-------ESSSCEEEEESS
T ss_pred             eECCCCCeeE-EE-------cCCCEEEEEECC
Confidence            8889888765 45       789999999974

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.71  E-value=1.8e-16  Score=100.55  Aligned_cols=100  Identities=14%  Similarity=0.167  Sum_probs=74.4

Q ss_pred             CcccccCeeeecCCCCc------------eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecce
Q psy8803           1 KKSWYEEYKRLDYHTPI------------VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDM   68 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~------------~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~   68 (111)
                      ++++.|++|++||+...            .+...+.+|...|.+++|+|++.+|++++.|+.+++||.+++.....   .
T Consensus       272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~---l  348 (393)
T 1erj_A          272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM---L  348 (393)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE---E
T ss_pred             EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE---E
Confidence            35678999999999753            34567788999999999999999999999999999999988765431   1


Q ss_pred             eeeecCceeeEEEccC-----CCEEEEeccccCCccccCceEEEeecC
Q psy8803          69 KTFSWKYTQYSQFNES-----DTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        69 ~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ... -..+..++|++.     +..++++|       +.|+.|+||+++
T Consensus       349 ~~h-~~~v~~v~~~~~~~~~p~~~~l~sg-------s~Dg~i~iW~~~  388 (393)
T 1erj_A          349 QGH-RNSVISVAVANGSSLGPEYNVFATG-------SGDCKARIWKYK  388 (393)
T ss_dssp             ECC-SSCEEEEEECSSCTTCTTCEEEEEE-------ETTSEEEEEEEE
T ss_pred             CCC-CCCEEEEEecCCcCcCCCCCEEEEE-------CCCCcEEECccc
Confidence            111 134555666652     34556777       889999999973

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.71  E-value=3e-17  Score=102.87  Aligned_cols=102  Identities=19%  Similarity=0.082  Sum_probs=70.7

Q ss_pred             CcccccCeeeecCCCCce---eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCcee
Q psy8803           1 KKSWYEEYKRLDYHTPIV---ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~---~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   77 (111)
                      ++++.|++|++||+.+++   ....+.+|...|.+++|+|+++.|++++.|+.+++||++..........+....-.+++
T Consensus        71 ~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~  150 (377)
T 3dwl_C           71 VTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL  150 (377)
T ss_dssp             EEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred             EEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence            356789999999999876   67777889999999999999999999999999999999875421100011110124677


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +++|+|++..++ ++       +.|+.|++||+
T Consensus       151 ~~~~~~~~~~l~-~~-------~~d~~i~iwd~  175 (377)
T 3dwl_C          151 SLDWHPNNVLLA-AG-------CADRKAYVLSA  175 (377)
T ss_dssp             EEEECTTSSEEE-EE-------ESSSCEEEEEE
T ss_pred             EEEEcCCCCEEE-EE-------eCCCEEEEEEE
Confidence            889999887764 45       67999999997

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.71  E-value=1.5e-16  Score=100.29  Aligned_cols=55  Identities=16%  Similarity=0.148  Sum_probs=46.0

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      +++.|++|+|||..+++++..+. |.+.|.+++|+||++++++++.++ +.+|+...
T Consensus       152 s~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~  206 (365)
T 4h5i_A          152 SSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVT  206 (365)
T ss_dssp             ESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTT
T ss_pred             ECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEecc
Confidence            56789999999999999888876 788999999999999999998665 45555443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.71  E-value=7.2e-17  Score=106.18  Aligned_cols=98  Identities=15%  Similarity=0.078  Sum_probs=80.6

Q ss_pred             CcccccCeeeecCCCCceeeeeeec-ccccEEEEEEcC----------CCcEEEEEeCCCeEEEEecCCC-ceeeeecce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQ-HTHQVLHVSFSH----------NGRYFATCSKDGYILVWTSSYP-SKVKYSHDM   68 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~i~~s~----------~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~   68 (111)
                      ++++.|+.|++||+.+++.+..+.+ |...|.+++|+|          ++++|++++.|+.|++||++.. .....   .
T Consensus       504 ~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~  580 (615)
T 1pgu_A          504 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA---L  580 (615)
T ss_dssp             EEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE---T
T ss_pred             EEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh---h
Confidence            3567899999999999999998888 999999999999          9999999999999999999876 33331   1


Q ss_pred             eeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          69 KTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ... -.+++.++|+|++. + +++       +.|+.|++||++
T Consensus       581 ~~h-~~~v~~l~~s~~~~-l-~s~-------~~d~~v~iw~~~  613 (615)
T 1pgu_A          581 NAH-KDGVNNLLWETPST-L-VSS-------GADACIKRWNVV  613 (615)
T ss_dssp             TSS-TTCEEEEEEEETTE-E-EEE-------ETTSCEEEEEEC
T ss_pred             hcC-ccceEEEEEcCCCC-e-EEe-------cCCceEEEEeee
Confidence            111 24677888999988 4 555       789999999984

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.71  E-value=6.8e-17  Score=102.15  Aligned_cols=99  Identities=14%  Similarity=0.223  Sum_probs=79.1

Q ss_pred             cccccC---eeeecCCCCc-eeeeeee-cccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCc
Q psy8803           2 KSWYEE---YKRLDYHTPI-VETEVLT-QHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKY   75 (111)
Q Consensus         2 ~~~~d~---~i~iw~~~~~-~~~~~~~-~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~   75 (111)
                      +++.|+   .|++||++.+ +++..+. +|...|.+++|+| ++++|++++.|+.+++||++.......   .... -.+
T Consensus       232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~---~~~~-~~~  307 (416)
T 2pm9_A          232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ---FPAR-GNW  307 (416)
T ss_dssp             EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE---EECS-SSC
T ss_pred             EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee---ecCC-CCc
Confidence            455676   9999999986 6777777 8999999999999 899999999999999999988765542   1111 145


Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +..++|+|++..+++++       +.|+.|++||++
T Consensus       308 v~~~~~s~~~~~~l~s~-------~~d~~i~iw~~~  336 (416)
T 2pm9_A          308 CFKTKFAPEAPDLFACA-------SFDNKIEVQTLQ  336 (416)
T ss_dssp             CCCEEECTTCTTEEEEC-------CSSSEEEEEESC
T ss_pred             eEEEEECCCCCCEEEEE-------ecCCcEEEEEcc
Confidence            66788999885455666       789999999974

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.71  E-value=1.9e-16  Score=97.32  Aligned_cols=59  Identities=19%  Similarity=0.262  Sum_probs=52.6

Q ss_pred             CcccccCeeeecCCCCc---------eeeeeeecccccEEEEEEcCC--CcEEEEEeCCCeEEEEecCCC
Q psy8803           1 KKSWYEEYKRLDYHTPI---------VETEVLTQHTHQVLHVSFSHN--GRYFATCSKDGYILVWTSSYP   59 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~---------~~~~~~~~~~~~v~~i~~s~~--~~~l~s~~~d~~i~iw~~~~~   59 (111)
                      ++++.|++|++||+..+         +.+..+.+|...|.+++|+|+  +++|++++.|+.+++||++..
T Consensus        75 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~  144 (351)
T 3f3f_A           75 ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP  144 (351)
T ss_dssp             EEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSST
T ss_pred             EEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCCh
Confidence            35788999999999876         557778899999999999999  999999999999999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.70  E-value=4.2e-16  Score=96.78  Aligned_cols=103  Identities=17%  Similarity=0.139  Sum_probs=82.7

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++........   .  .-.++..++
T Consensus        48 ~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~--~~~~v~~~~  122 (369)
T 3zwl_B           48 FSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW---K--SPVPVKRVE  122 (369)
T ss_dssp             EEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE---E--CSSCEEEEE
T ss_pred             EEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---e--cCCCeEEEE
Confidence            35678999999999999999999999999999999999999999999999999999987665421   1  124677889


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..+++++.+..   ..++.|++||++
T Consensus       123 ~~~~~~~l~~~~~~~~---~~~g~i~~~d~~  150 (369)
T 3zwl_B          123 FSPCGNYFLAILDNVM---KNPGSINIYEIE  150 (369)
T ss_dssp             ECTTSSEEEEEECCBT---TBCCEEEEEEEE
T ss_pred             EccCCCEEEEecCCcc---CCCCEEEEEEec
Confidence            9999988876541111   123899999963

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.1e-16  Score=110.55  Aligned_cols=101  Identities=12%  Similarity=0.187  Sum_probs=78.6

Q ss_pred             CcccccCeeeecCCCCc---------------------------------------------eeeeeeecccccEEEEEE
Q psy8803           1 KKSWYEEYKRLDYHTPI---------------------------------------------VETEVLTQHTHQVLHVSF   35 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~---------------------------------------------~~~~~~~~~~~~v~~i~~   35 (111)
                      |+++.||+|+||++.++                                             +++..+.+|.+.|.+++|
T Consensus       504 Asgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svaf  583 (902)
T 2oaj_A          504 AVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINN  583 (902)
T ss_dssp             EEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEE
T ss_pred             EEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEe
Confidence            56789999999999755                                             236677889999999999


Q ss_pred             cCCCcEEEEEeCCCeEEEEecCCCceeeeecceee---eecCceeeEEEc-----cCC--CEEEEeccccCCccccCceE
Q psy8803          36 SHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKT---FSWKYTQYSQFN-----ESD--TLLLVSGVHFGTPQSTSGEI  105 (111)
Q Consensus        36 s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~v~~~-----~~~--~~~~~~~~~~~~~~~~~~~i  105 (111)
                      +||| +|++|+.|++|++||++....... ..+..   ..-..+++++|+     |++  ...+++|       +.|++|
T Consensus       584 SpdG-~lAsgs~D~tv~lwd~~~~~~~~~-~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sg-------s~D~tv  654 (902)
T 2oaj_A          584 SNIG-FVGIAYAAGSLMLIDRRGPAIIYM-ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCG-------TDMGEV  654 (902)
T ss_dssp             CBTS-EEEEEETTSEEEEEETTTTEEEEE-EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEE-------ETTSEE
T ss_pred             cCCc-EEEEEeCCCcEEEEECCCCeEEEE-eehhHhccccccceEEEEEEEEecCCCCCcceEEEEE-------ecCCcE
Confidence            9999 999999999999999987655431 01110   111347788999     886  4566777       889999


Q ss_pred             EEeec
Q psy8803         106 AVFSL  110 (111)
Q Consensus       106 ~iw~~  110 (111)
                      ++||+
T Consensus       655 ~~wd~  659 (902)
T 2oaj_A          655 ITYKI  659 (902)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.70  E-value=1.8e-16  Score=99.68  Aligned_cols=96  Identities=23%  Similarity=0.131  Sum_probs=77.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCc-EEEEEeCCCeEEEEecCC----CceeeeecceeeeecCce
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR-YFATCSKDGYILVWTSSY----PSKVKYSHDMKTFSWKYT   76 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~i~iw~~~~----~~~~~~~~~~~~~~~~~~   76 (111)
                      +++.|+.|++||++ ++.+..+.+|...|.+++|+|+++ +|++++.|+.|++||++.    ......    ... -.++
T Consensus       180 ~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~-~~~v  253 (383)
T 3ei3_B          180 TGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE----MPH-EKPV  253 (383)
T ss_dssp             EEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE----EEC-SSCE
T ss_pred             EECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE----ecC-CCce
Confidence            56789999999994 778888999999999999999998 999999999999999986    333221    111 2467


Q ss_pred             eeEEEcc-CCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNE-SDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~-~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..++|+| ++..++ ++       +.|+.|++||++
T Consensus       254 ~~~~~s~~~~~~l~-~~-------~~d~~i~iwd~~  281 (383)
T 3ei3_B          254 NAAYFNPTDSTKLL-TT-------DQRNEIRVYSSY  281 (383)
T ss_dssp             EEEEECTTTSCEEE-EE-------ESSSEEEEEETT
T ss_pred             EEEEEcCCCCCEEE-EE-------cCCCcEEEEECC
Confidence            7889999 777664 55       679999999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.70  E-value=3.4e-16  Score=98.53  Aligned_cols=102  Identities=13%  Similarity=0.225  Sum_probs=81.1

Q ss_pred             cccccCeeeecCCCCceeeeeeec---c---cccEEEEEEcCCCcEEEEEeCC---CeEEEEecCCCceeeeeccee--e
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQ---H---THQVLHVSFSHNGRYFATCSKD---GYILVWTSSYPSKVKYSHDMK--T   70 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~---~---~~~v~~i~~s~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~--~   70 (111)
                      +++.|+.|++||+++++.+..+..   |   ...|.+++|+|++++|++++.|   +.|++||++............  .
T Consensus       202 ~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~  281 (397)
T 1sq9_A          202 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS  281 (397)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC----
T ss_pred             EEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccc
Confidence            567899999999999999999998   8   9999999999999999999999   999999998876554211100  0


Q ss_pred             -------eecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          71 -------FSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        71 -------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                             ..-.++..++|+|++..++ ++       +.|+.|++||++
T Consensus       282 ~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-------~~dg~i~iwd~~  321 (397)
T 1sq9_A          282 QASLGEFAHSSWVMSLSFNDSGETLC-SA-------GWDGKLRFWDVK  321 (397)
T ss_dssp             ----CCBSBSSCEEEEEECSSSSEEE-EE-------ETTSEEEEEETT
T ss_pred             cccccccccCCcEEEEEECCCCCEEE-EE-------eCCCeEEEEEcC
Confidence                   0125677899999888765 44       679999999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.70  E-value=2.4e-16  Score=106.86  Aligned_cols=99  Identities=16%  Similarity=0.143  Sum_probs=82.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      |+++.||.|++||+.+++.+..+.+|...|.+++|+|+++.|++++.|+.|++||+.++.....   .... -.++.+++
T Consensus        29 a~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~---~~~~-~~~v~~~~  104 (814)
T 3mkq_A           29 LTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD---FEAH-PDYIRSIA  104 (814)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE---EECC-SSCEEEEE
T ss_pred             EEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE---EecC-CCCEEEEE
Confidence            3567899999999999999999999999999999999999999999999999999988765542   1111 14567888


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..++ ++       +.|+.|++||++
T Consensus       105 ~s~~~~~l~-~~-------~~dg~i~vw~~~  127 (814)
T 3mkq_A          105 VHPTKPYVL-SG-------SDDLTVKLWNWE  127 (814)
T ss_dssp             ECSSSSEEE-EE-------ETTSEEEEEEGG
T ss_pred             EeCCCCEEE-EE-------cCCCEEEEEECC
Confidence            999998875 44       679999999973

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.70  E-value=3.6e-16  Score=99.77  Aligned_cols=95  Identities=11%  Similarity=0.115  Sum_probs=75.8

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe--CCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS--KDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++.|++|++||+.+++....+..| ..+..+.|+++++.+++++  .|+.|++||+++...+..   ...+. .++++++
T Consensus       297 gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~---l~gH~-~~V~~l~  371 (420)
T 4gga_A          297 GTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE---LKGHT-SRVLSLT  371 (420)
T ss_dssp             CTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE---ECCCS-SCEEEEE
T ss_pred             ecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEE---EcCCC-CCEEEEE
Confidence            568999999999999988888754 5788899999988877764  789999999998776542   22222 4677888


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      |+|++..+ ++|       +.|++|+|||+
T Consensus       372 ~spdg~~l-~S~-------s~D~tvriWdv  393 (420)
T 4gga_A          372 MSPDGATV-ASA-------AADETLRLWRC  393 (420)
T ss_dssp             ECTTSSCE-EEE-------ETTTEEEEECC
T ss_pred             EcCCCCEE-EEE-------ecCCeEEEEEC
Confidence            99998876 455       78999999997

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.70  E-value=1.6e-16  Score=101.76  Aligned_cols=100  Identities=16%  Similarity=0.256  Sum_probs=78.2

Q ss_pred             CcccccCeeeecCCCCce-------eeeeeecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCCc---eeeeeccee
Q psy8803           1 KKSWYEEYKRLDYHTPIV-------ETEVLTQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYPS---KVKYSHDMK   69 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~-------~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~   69 (111)
                      ++++.||+|++|++..+.       ....+.+|...|.+++|+| ++.+|++++.|+.|++||++...   ...   ...
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~---~~~  274 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH---TVD  274 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSE---EEE
T ss_pred             EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCccee---Eee
Confidence            357789999999998732       2456678999999999999 68899999999999999998752   221   111


Q ss_pred             eeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          70 TFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        70 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .. -.++++++|+|.+..++++|       +.++.|++||++
T Consensus       275 ~~-~~~v~~i~~~p~~~~~l~tg-------~~dg~v~vwd~~  308 (430)
T 2xyi_A          275 AH-TAEVNCLSFNPYSEFILATG-------SADKTVALWDLR  308 (430)
T ss_dssp             CC-SSCEEEEEECSSCTTEEEEE-------ETTSEEEEEETT
T ss_pred             cC-CCCeEEEEeCCCCCCEEEEE-------eCCCeEEEEeCC
Confidence            11 24677889999888777777       889999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.69  E-value=2.7e-16  Score=110.67  Aligned_cols=100  Identities=21%  Similarity=0.296  Sum_probs=82.6

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      |+++.||+|++||..+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.++.....   .... -.++.+++
T Consensus       631 ~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~---~~~~-~~~v~~~~  706 (1249)
T 3sfz_A          631 ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT---YDEH-SEQVNCCH  706 (1249)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---EECC-SSCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE---EcCC-CCcEEEEE
Confidence            3568899999999999999999999999999999999999999999999999999998765542   1111 24566788


Q ss_pred             EccC-CCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNES-DTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~-~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|+ ...+++++       +.|+.|++||++
T Consensus       707 ~~~~~~~~~l~sg-------~~d~~v~vwd~~  731 (1249)
T 3sfz_A          707 FTNKSNHLLLATG-------SNDFFLKLWDLN  731 (1249)
T ss_dssp             ECSSSSCCEEEEE-------ETTSCEEEEETT
T ss_pred             EecCCCceEEEEE-------eCCCeEEEEECC
Confidence            8885 34556777       889999999974

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.69  E-value=1.5e-16  Score=101.01  Aligned_cols=103  Identities=8%  Similarity=-0.075  Sum_probs=75.1

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCC-cEEEEEeCCCeEEEEecCCCceeee--------eccee--
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNG-RYFATCSKDGYILVWTSSYPSKVKY--------SHDMK--   69 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~~--------~~~~~--   69 (111)
                      |+++.|++|+|||+.++.++..+.+|.+.+.+++|+|++ ++|++++.|+.|++||++.......        ...+.  
T Consensus       160 as~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~  239 (393)
T 4gq1_A          160 ASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL  239 (393)
T ss_dssp             EEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE
T ss_pred             EEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec
Confidence            467899999999999888888888899999999999986 5899999999999999987532210        00000  


Q ss_pred             -----------eeecCceeeEEEcc-CCCEEEEeccccCCccccCceEEEeecC
Q psy8803          70 -----------TFSWKYTQYSQFNE-SDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        70 -----------~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                                 ......+..++|.+ ++.. ++++       +.|+.+++||++
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~-l~s~-------s~d~~i~vwd~~  285 (393)
T 4gq1_A          240 NTLPLVNTCHSSGIASSLANVRWIGSDGSG-ILAM-------CKSGAWLRWNLF  285 (393)
T ss_dssp             ESGGGC------CCSSSCSEEEEETTTTCE-EEEE-------CTTSEEEEEEC-
T ss_pred             ccccceeeeecccccccceeeeeecCCCCE-EEEE-------eCCCCEEEEECc
Confidence                       01112356777775 5555 4566       789999999974

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.69  E-value=1.6e-16  Score=101.77  Aligned_cols=99  Identities=17%  Similarity=0.174  Sum_probs=78.5

Q ss_pred             cccccCeeeecCCCCc---eeeeeeecccccEEEEEEcCCCc-EEEEEeCCCeEEEEecCCCc-eeeeecceeeeecCce
Q psy8803           2 KSWYEEYKRLDYHTPI---VETEVLTQHTHQVLHVSFSHNGR-YFATCSKDGYILVWTSSYPS-KVKYSHDMKTFSWKYT   76 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~   76 (111)
                      +++.|+.|++||++.+   +.+..+..|...|.+++|+|++. +|++++.|+.|++||++... ....   .... -.++
T Consensus       249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~---~~~h-~~~v  324 (430)
T 2xyi_A          249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS---FESH-KDEI  324 (430)
T ss_dssp             EEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE---EECC-SSCE
T ss_pred             EEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE---eecC-CCCE
Confidence            5678999999999976   56777788999999999999876 79999999999999998732 2221   1111 2456


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..++|+|++..+++++       +.|+.|+|||++
T Consensus       325 ~~i~~sp~~~~~l~s~-------~~d~~i~iwd~~  352 (430)
T 2xyi_A          325 FQVQWSPHNETILASS-------GTDRRLHVWDLS  352 (430)
T ss_dssp             EEEEECSSCTTEEEEE-------ETTSCCEEEEGG
T ss_pred             EEEEECCCCCCEEEEE-------eCCCcEEEEeCC
Confidence            7888999887767777       789999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.69  E-value=8e-17  Score=101.81  Aligned_cols=103  Identities=15%  Similarity=0.164  Sum_probs=79.1

Q ss_pred             CcccccCeeeecCCCC----ceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCc------eeeeeccee
Q psy8803           1 KKSWYEEYKRLDYHTP----IVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPS------KVKYSHDMK   69 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~----~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~------~~~~~~~~~   69 (111)
                      ++++.|+.|++||+..    .+.+..+.+|...|.+++|+|+ +++|++++.|+.|++||++...      .........
T Consensus        83 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  162 (416)
T 2pm9_A           83 AGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM  162 (416)
T ss_dssp             EEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred             EEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc
Confidence            3567899999999987    3577888899999999999998 8999999999999999998765      221110111


Q ss_pred             eeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          70 TFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        70 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .. -.++.+++|+|++..+++++       +.++.|++||++
T Consensus       163 ~~-~~~v~~~~~~~~~~~~l~~~-------~~dg~v~iwd~~  196 (416)
T 2pm9_A          163 SS-VDEVISLAWNQSLAHVFASA-------GSSNFASIWDLK  196 (416)
T ss_dssp             CS-SCCCCEEEECSSCTTEEEEE-------SSSSCEEEEETT
T ss_pred             CC-CCCeeEEEeCCCCCcEEEEE-------cCCCCEEEEECC
Confidence            11 14567889999855555666       789999999974

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.7e-16  Score=99.02  Aligned_cols=99  Identities=20%  Similarity=0.334  Sum_probs=78.2

Q ss_pred             CcccccCeeeecCCC--CceeeeeeecccccEEEEEEcCC--CcEEEEEeCCCeEEEEecCCCc--eeeeecceeeeecC
Q psy8803           1 KKSWYEEYKRLDYHT--PIVETEVLTQHTHQVLHVSFSHN--GRYFATCSKDGYILVWTSSYPS--KVKYSHDMKTFSWK   74 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~   74 (111)
                      |+++.||.|++||+.  +++.+..+.+|...|.+++|+++  +++|++++.|+.|++||++...  ....   ... .-.
T Consensus        27 ~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~-~~~  102 (379)
T 3jrp_A           27 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV---HAV-HSA  102 (379)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE---ECC-CSS
T ss_pred             EEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee---ecC-CCc
Confidence            356789999999998  56777888999999999999987  9999999999999999998765  2221   111 124


Q ss_pred             ceeeEEEccC--CCEEEEeccccCCccccCceEEEeecC
Q psy8803          75 YTQYSQFNES--DTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        75 ~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++.+++|+|+  +..+ +++       +.|+.|++||++
T Consensus       103 ~v~~~~~~~~~~~~~l-~~~-------~~d~~i~v~d~~  133 (379)
T 3jrp_A          103 SVNSVQWAPHEYGPLL-LVA-------SSDGKVSVVEFK  133 (379)
T ss_dssp             CEEEEEECCGGGCSEE-EEE-------ETTSEEEEEECC
T ss_pred             ceEEEEeCCCCCCCEE-EEe-------cCCCcEEEEecC
Confidence            5678889998  6665 444       679999999974

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=7.3e-16  Score=96.10  Aligned_cols=102  Identities=11%  Similarity=0.139  Sum_probs=77.2

Q ss_pred             cccccCeeeecCCCCc--eeeeeeecccccEEEEEEcC-------------CCcEEEEEeCCCeEEEEecCCCceee-ee
Q psy8803           2 KSWYEEYKRLDYHTPI--VETEVLTQHTHQVLHVSFSH-------------NGRYFATCSKDGYILVWTSSYPSKVK-YS   65 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~i~~s~-------------~~~~l~s~~~d~~i~iw~~~~~~~~~-~~   65 (111)
                      +++.|+.|++||+..+  .....+.+|...|.+++|+|             ++..|++++.|+.|++||++...... ..
T Consensus       120 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  199 (379)
T 3jrp_A          120 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  199 (379)
T ss_dssp             EEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             EecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE
Confidence            5678999999999877  34456678999999999999             69999999999999999998654221 11


Q ss_pred             cceeeeecCceeeEEEccCC--CEEEEeccccCCccccCceEEEeecC
Q psy8803          66 HDMKTFSWKYTQYSQFNESD--TLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        66 ~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ...... -.++..++|+|++  ..+++++       +.|+.|++||++
T Consensus       200 ~~~~~h-~~~v~~~~~sp~~~~~~~l~s~-------~~dg~i~iwd~~  239 (379)
T 3jrp_A          200 STLEGH-SDWVRDVAWSPTVLLRSYLASV-------SQDRTCIIWTQD  239 (379)
T ss_dssp             EEECCC-SSCEEEEEECCCCSSSEEEEEE-------ETTSCEEEEEES
T ss_pred             EEEecc-cCcEeEEEECCCCCCCCeEEEE-------eCCCEEEEEeCC
Confidence            111111 2467788999984  4555666       789999999974

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.68  E-value=2.5e-15  Score=93.27  Aligned_cols=59  Identities=15%  Similarity=0.110  Sum_probs=54.0

Q ss_pred             cccccCeeeecCCCC-ceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCc
Q psy8803           2 KSWYEEYKRLDYHTP-IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS   60 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~   60 (111)
                      ++..||.|++||+.+ .+.+..+..|...|.+++|+|++++|++++.|+.+++||++...
T Consensus       192 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  251 (369)
T 3zwl_B          192 AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ  251 (369)
T ss_dssp             EEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence            467899999999998 68888889999999999999999999999999999999998754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.68  E-value=6.5e-16  Score=99.24  Aligned_cols=96  Identities=16%  Similarity=0.202  Sum_probs=77.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +++.|+.|++||+.+++.+..+.+|...|.+++|+|+++.+++++.|+.|++||++++......   ... -.++..++|
T Consensus       285 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~h-~~~v~~~~~  360 (464)
T 3v7d_B          285 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL---QGH-TALVGLLRL  360 (464)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE---CCC-SSCEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE---eCC-CCcEEEEEE
Confidence            5678999999999999999999999999999999999999999999999999999987655421   111 134556666


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +  +..+ +++       +.|+.|++||++
T Consensus       361 ~--~~~l-~s~-------s~dg~v~vwd~~  380 (464)
T 3v7d_B          361 S--DKFL-VSA-------AADGSIRGWDAN  380 (464)
T ss_dssp             C--SSEE-EEE-------ETTSEEEEEETT
T ss_pred             c--CCEE-EEE-------eCCCcEEEEECC
Confidence            6  3444 555       789999999974

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.67  E-value=5.7e-16  Score=98.78  Aligned_cols=98  Identities=13%  Similarity=0.054  Sum_probs=72.5

Q ss_pred             ccCeeeecCCCC-ceeee-------eeecccccEEEEEEcCCC-cEEEEEeCCCeEEEEecCCCceee-eecceeeee--
Q psy8803           5 YEEYKRLDYHTP-IVETE-------VLTQHTHQVLHVSFSHNG-RYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFS--   72 (111)
Q Consensus         5 ~d~~i~iw~~~~-~~~~~-------~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~--   72 (111)
                      .|++|++||+.. ++.+.       .+.+|...|.+++|+|++ ++|++++.|+.|++||++...... +........  
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  275 (447)
T 3dw8_B          196 DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDP  275 (447)
T ss_dssp             CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC---
T ss_pred             CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCc
Confidence            799999999994 44443       356899999999999998 999999999999999998765311 000011100  


Q ss_pred             ---------cCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          73 ---------WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        73 ---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                               ..++..++|+|++..+++ +       +. +.|++||++
T Consensus       276 ~~~~~~~~~~~~v~~~~~s~~g~~l~~-~-------~~-~~v~iwd~~  314 (447)
T 3dw8_B          276 SNRSFFSEIISSISDVKFSHSGRYMMT-R-------DY-LSVKVWDLN  314 (447)
T ss_dssp             --CCHHHHHTTCEEEEEECTTSSEEEE-E-------ES-SEEEEEETT
T ss_pred             cccccccccCceEEEEEECCCCCEEEE-e-------eC-CeEEEEeCC
Confidence                     016778999999888765 3       44 899999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.67  E-value=1.7e-15  Score=93.15  Aligned_cols=97  Identities=13%  Similarity=0.118  Sum_probs=81.1

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +++.|+.|++||+.+++.+..+.+|...+.+++|+|+++.|++++.|+.+++||++........    .. -.++..++|
T Consensus       158 ~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~-~~~v~~~~~  232 (337)
T 1gxr_A          158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----DF-TSQIFSLGY  232 (337)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----EC-SSCEEEEEE
T ss_pred             EEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee----cC-CCceEEEEE
Confidence            4678999999999999999999999999999999999999999999999999999987655421    11 145677889


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|++..+++ +       +.++.|++||++
T Consensus       233 s~~~~~l~~-~-------~~~~~i~~~~~~  254 (337)
T 1gxr_A          233 CPTGEWLAV-G-------MESSNVEVLHVN  254 (337)
T ss_dssp             CTTSSEEEE-E-------ETTSCEEEEETT
T ss_pred             CCCCCEEEE-E-------cCCCcEEEEECC
Confidence            999888755 4       568899999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.67  E-value=5.5e-16  Score=96.66  Aligned_cols=100  Identities=16%  Similarity=0.167  Sum_probs=79.4

Q ss_pred             cccccCeeeecCCCCce--eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      +++.|+.|++||+..++  .+..+.+|...|.+++|+|++++|++++.|+.+++||++........ ..... -..+..+
T Consensus        25 ~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~-~~~v~~~  102 (372)
T 1k8k_C           25 ICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL-VILRI-NRAARCV  102 (372)
T ss_dssp             EECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE-ECCCC-SSCEEEE
T ss_pred             EEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE-EeecC-CCceeEE
Confidence            56689999999999886  88888999999999999999999999999999999999876533211 01111 1456788


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|+|++..+++ +       +.++.|++||++
T Consensus       103 ~~~~~~~~l~~-~-------~~d~~v~i~d~~  126 (372)
T 1k8k_C          103 RWAPNEKKFAV-G-------SGSRVISICYFE  126 (372)
T ss_dssp             EECTTSSEEEE-E-------ETTSSEEEEEEE
T ss_pred             EECCCCCEEEE-E-------eCCCEEEEEEec
Confidence            89998877655 4       678999999963

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.67  E-value=7.9e-16  Score=104.32  Aligned_cols=101  Identities=14%  Similarity=0.085  Sum_probs=80.8

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.||.|++||+.+++.+..+.+|.+.|.+++|+|+++.|++++.|+.+++|+++.......   .....-.++.+++
T Consensus        71 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~---~~~~~~~~v~~~~  147 (814)
T 3mkq_A           71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ---TFEGHEHFVMCVA  147 (814)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE---EEECCSSCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE---EEcCCCCcEEEEE
Confidence            3567899999999999999999999999999999999999999999999999999987533221   1111124567888


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|.+..+++++       +.|+.|++||++
T Consensus       148 ~~p~~~~~l~~~-------~~dg~v~vwd~~  171 (814)
T 3mkq_A          148 FNPKDPSTFASG-------CLDRTVKVWSLG  171 (814)
T ss_dssp             EETTEEEEEEEE-------ETTSEEEEEETT
T ss_pred             EEcCCCCEEEEE-------eCCCeEEEEECC
Confidence            999555555666       789999999973

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.67  E-value=2.9e-16  Score=101.14  Aligned_cols=98  Identities=15%  Similarity=0.119  Sum_probs=75.6

Q ss_pred             cccccCeeeecCCCCc--------e---eeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeeccee
Q psy8803           2 KSWYEEYKRLDYHTPI--------V---ETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMK   69 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~--------~---~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~   69 (111)
                      +++.|++|++||+.+.        +   .+..+.+|...|.+++|+|+ +++|++++.|+++++||++........   .
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~---~  189 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT---L  189 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE---E
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec---c
Confidence            5778999999998654        1   24556679999999999998 899999999999999999986443211   1


Q ss_pred             eeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          70 TFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        70 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .. -..+++++|+|++..++ +|       +.|+.|++||++
T Consensus       190 ~~-~~~v~~v~wspdg~~la-sg-------s~dg~v~iwd~~  222 (434)
T 2oit_A          190 PS-TVAVTSVCWSPKGKQLA-VG-------KQNGTVVQYLPT  222 (434)
T ss_dssp             CG-GGCEEEEEECTTSSCEE-EE-------ETTSCEEEECTT
T ss_pred             CC-CCceeEEEEcCCCCEEE-EE-------cCCCcEEEEccC
Confidence            11 13567888999987764 45       689999999975

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.67  E-value=4.2e-16  Score=98.37  Aligned_cols=99  Identities=13%  Similarity=0.058  Sum_probs=80.3

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCc--------------------e
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS--------------------K   61 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~--------------------~   61 (111)
                      +++.|+.|++||+.+++.+..+..|...+.+++|+|++++|++++.|+.|++||++...                    .
T Consensus       305 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (425)
T 1r5m_A          305 SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL  384 (425)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCE
T ss_pred             EEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchh
Confidence            56789999999999999999999999999999999999999999999999999997644                    2


Q ss_pred             eeeecceeeeecC-ceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          62 VKYSHDMKTFSWK-YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        62 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..   ......-. +++.++|+|++..+++ +       +.|+.|++||++
T Consensus       385 ~~---~~~~~~~~~~v~~~~~s~~~~~l~~-~-------~~dg~i~iw~~~  424 (425)
T 1r5m_A          385 YA---SYQSSQDNDYIFDLSWNCAGNKISV-A-------YSLQEGSVVAIP  424 (425)
T ss_dssp             EE---EECCTTCCCCEEEEEECTTSSEEEE-E-------ESSSCCEEEECC
T ss_pred             hh---hhcCcccCCceEEEEccCCCceEEE-E-------ecCceEEEEeec
Confidence            21   11111101 6788999999987654 4       679999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.66  E-value=2.6e-15  Score=92.31  Aligned_cols=98  Identities=14%  Similarity=0.151  Sum_probs=78.6

Q ss_pred             cccccCeeeecCCCCce--eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      +++.|+.|++||+..++  ....+..|...+.+++|+|+++.+++++.|+.+++||++........   .. .-.++..+
T Consensus       114 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~---~~-~~~~i~~~  189 (337)
T 1gxr_A          114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF---QG-HTDGASCI  189 (337)
T ss_dssp             EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CC-CSSCEEEE
T ss_pred             EEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee---ec-ccCceEEE
Confidence            46789999999999876  56677889999999999999999999999999999999987655421   11 12456788


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|+|++..+++ +       +.++.|++||++
T Consensus       190 ~~~~~~~~l~~-~-------~~dg~i~~~d~~  213 (337)
T 1gxr_A          190 DISNDGTKLWT-G-------GLDNTVRSWDLR  213 (337)
T ss_dssp             EECTTSSEEEE-E-------ETTSEEEEEETT
T ss_pred             EECCCCCEEEE-E-------ecCCcEEEEECC
Confidence            89998877654 4       679999999974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.66  E-value=3e-16  Score=100.15  Aligned_cols=102  Identities=12%  Similarity=0.074  Sum_probs=77.4

Q ss_pred             CcccccCeeeecCCCCceeeeeee-cccccEEEEEEc----CCCcEEEEEeCCCeEEEEecCCCceee----eecceeee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLT-QHTHQVLHVSFS----HNGRYFATCSKDGYILVWTSSYPSKVK----YSHDMKTF   71 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~s----~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~   71 (111)
                      ++++.||+|++||++.++++..+. +|...|.+++|+    +++.+|++++.|+.|++||++.+....    +...+...
T Consensus       230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  309 (437)
T 3gre_A          230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME  309 (437)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG
T ss_pred             EEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc
Confidence            357889999999999999888886 788899999665    467899999999999999998765443    22222211


Q ss_pred             ec------------------CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          72 SW------------------KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        72 ~~------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .+                  .++.+++|+ ++ .+++++       +.|+.|++||++
T Consensus       310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~-------~~d~~i~~wd~~  358 (437)
T 3gre_A          310 HFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTD-------EATSSIVMFSLN  358 (437)
T ss_dssp             GGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEE-------GGGTEEEEEETT
T ss_pred             eecccccccccceecccccCCceEEEEEC-Cc-eEEEec-------CCCCeEEEEECC
Confidence            11                  236778898 55 555666       789999999974

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.66  E-value=3e-16  Score=100.08  Aligned_cols=101  Identities=14%  Similarity=0.185  Sum_probs=73.6

Q ss_pred             cccccCeeeecCCCCceee---------------------------------------ee-eecccccEEEEEEcCCCcE
Q psy8803           2 KSWYEEYKRLDYHTPIVET---------------------------------------EV-LTQHTHQVLHVSFSHNGRY   41 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~---------------------------------------~~-~~~~~~~v~~i~~s~~~~~   41 (111)
                      +++.|++|++||+..+...                                       .. +.+|...|.+++|+|++++
T Consensus       112 s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  191 (447)
T 3dw8_B          112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYET  191 (447)
T ss_dssp             EEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSE
T ss_pred             EeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCE
Confidence            5788999999999764432                                       12 3579999999999999999


Q ss_pred             EEEEeCCCeEEEEecCCC-ceeee----ecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          42 FATCSKDGYILVWTSSYP-SKVKY----SHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        42 l~s~~~d~~i~iw~~~~~-~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+++ .|+.|++||++.. .....    ....... -..+.+++|+|++..+++++       +.|+.|++||++
T Consensus       192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~-------~~dg~i~iwd~~  257 (447)
T 3dw8_B          192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEEL-TEVITAAEFHPNSCNTFVYS-------SSKGTIRLCDMR  257 (447)
T ss_dssp             EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGC-CCCEEEEEECSSCTTEEEEE-------ETTSCEEEEETT
T ss_pred             EEEe-CCCeEEEEECCCCCceeeeeeccccccccc-CcceEEEEECCCCCcEEEEE-------eCCCeEEEEECc
Confidence            9998 7999999999842 22220    0011111 14577889999884445666       789999999975

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.66  E-value=2.2e-15  Score=94.70  Aligned_cols=98  Identities=16%  Similarity=0.108  Sum_probs=74.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeec---ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCcee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQ---HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   77 (111)
                      ++++.|+.|++||+.. ..+..+..   |...|.+++|+|+++.|++++.|+.+++||++......    .... -..+.
T Consensus       135 ~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~h-~~~v~  208 (383)
T 3ei3_B          135 FVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFK----EKLH-KAKVT  208 (383)
T ss_dssp             EEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEE----EECS-SSCEE
T ss_pred             EEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEE----eccC-CCcEE
Confidence            3567899999999995 44555544   44789999999999999999999999999995432221    1111 14567


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +++|+|++..+++++       +.|+.|++||++
T Consensus       209 ~~~~~~~~~~~l~s~-------~~d~~i~iwd~~  235 (383)
T 3ei3_B          209 HAEFNPRCDWLMATS-------SVDATVKLWDLR  235 (383)
T ss_dssp             EEEECSSCTTEEEEE-------ETTSEEEEEEGG
T ss_pred             EEEECCCCCCEEEEE-------eCCCEEEEEeCC
Confidence            888999988455666       789999999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.66  E-value=1.8e-15  Score=96.56  Aligned_cols=93  Identities=17%  Similarity=0.242  Sum_probs=69.6

Q ss_pred             ccCeeeecCCCCceeeeeee--cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           5 YEEYKRLDYHTPIVETEVLT--QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      -|++|+|||..+++....+.  +|...|.+++|+|++++|++|+.|+.|++||+++.+.....   .... ..+.++++ 
T Consensus       123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~---~~h~-~~v~~~s~-  197 (420)
T 4gga_A          123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM---TSHS-ARVGSLSW-  197 (420)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCCS-SCEEEEEE-
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE---eCCC-CceEEEee-
Confidence            48999999999998766554  67788999999999999999999999999999987665411   1110 22223333 


Q ss_pred             cCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          83 ESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                       ++. ++++|       +.++.+++||.+
T Consensus       198 -~~~-~l~sg-------s~d~~i~~~d~~  217 (420)
T 4gga_A          198 -NSY-ILSSG-------SRSGHIHHHDVR  217 (420)
T ss_dssp             -ETT-EEEEE-------ETTSEEEEEETT
T ss_pred             -CCC-EEEEE-------eCCCceeEeeec
Confidence             333 45666       789999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.65  E-value=2.4e-15  Score=92.77  Aligned_cols=99  Identities=19%  Similarity=0.207  Sum_probs=76.6

Q ss_pred             CcccccCeeeecCCCCc-----eeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCc
Q psy8803           1 KKSWYEEYKRLDYHTPI-----VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKY   75 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~-----~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~   75 (111)
                      ++++.|++|+|||+.+.     .+...+.+|...|.+++|+|++++|++++.|+.+++|+............    ....
T Consensus        55 ~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~----~~~~  130 (340)
T 4aow_A           55 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG----HTKD  130 (340)
T ss_dssp             EEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC----CSSC
T ss_pred             EEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecC----CCCc
Confidence            46789999999998754     45677889999999999999999999999999999999987655432111    1133


Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .....+++.+..+ +++       +.|+.+++||++
T Consensus       131 ~~~~~~~~~~~~l-~s~-------s~d~~~~~~d~~  158 (340)
T 4aow_A          131 VLSVAFSSDNRQI-VSG-------SRDKTIKLWNTL  158 (340)
T ss_dssp             EEEEEECTTSSCE-EEE-------ETTSCEEEECTT
T ss_pred             eeEEEEeecCccc-eee-------cCCCeEEEEEeC
Confidence            4456677777766 455       789999999863

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.65  E-value=1.3e-15  Score=94.53  Aligned_cols=98  Identities=13%  Similarity=0.098  Sum_probs=75.5

Q ss_pred             cccccCeeeecCCCCceeeeeeec-----ccccEEEEEEcCC----CcEEEEEeCCCeEEEEecCCCceeeeecceeeee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQ-----HTHQVLHVSFSHN----GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFS   72 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~-----~~~~v~~i~~s~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~   72 (111)
                      ++..++.|++||+.+++.+..+..     |...|.+++|+|+    +++|++++.|+.|++||+.+......   .... 
T Consensus        39 ~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~---~~~~-  114 (366)
T 3k26_A           39 ATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH---YVGH-  114 (366)
T ss_dssp             EEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE---EESC-
T ss_pred             EECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee---ecCC-
Confidence            345678999999998876666654     4578999999998    67999999999999999988765542   1111 


Q ss_pred             cCceeeEEEcc-CCCEEEEeccccCCccccCceEEEeecC
Q psy8803          73 WKYTQYSQFNE-SDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        73 ~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      -.++..++|+| ++..+ +++       +.|+.|++||++
T Consensus       115 ~~~i~~~~~~~~~~~~l-~s~-------~~dg~i~iwd~~  146 (366)
T 3k26_A          115 GNAINELKFHPRDPNLL-LSV-------SKDHALRLWNIQ  146 (366)
T ss_dssp             CSCEEEEEECSSCTTEE-EEE-------ETTSCEEEEETT
T ss_pred             CCcEEEEEECCCCCCEE-EEE-------eCCCeEEEEEee
Confidence            25677889999 55554 555       779999999974

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.65  E-value=8.4e-16  Score=101.49  Aligned_cols=97  Identities=7%  Similarity=-0.032  Sum_probs=71.1

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccc-----cEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce-------eee-ecc
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTH-----QVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK-------VKY-SHD   67 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~-----~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~-------~~~-~~~   67 (111)
                      |+++.||.|++||...  .+..+. |..     .+.+++|||||++|++|+.|++|++||+..+..       ... ...
T Consensus       101 As~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~  177 (588)
T 2j04_A          101 AVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS  177 (588)
T ss_dssp             EEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS
T ss_pred             EEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecc
Confidence            5678999999999543  555566 665     599999999999999999999999999987642       111 000


Q ss_pred             eeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          68 MKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ...+ -..+.+++|+|++  + +++       +.|+.|++||+.
T Consensus       178 ~~gh-~~~V~sVawSPdg--L-aas-------s~D~tVrlWd~~  210 (588)
T 2j04_A          178 DAGS-KDWVTHIVWYEDV--L-VAA-------LSNNSVFSMTVS  210 (588)
T ss_dssp             CTTC-CCCEEEEEEETTE--E-EEE-------ETTCCEEEECCC
T ss_pred             cccc-cccEEEEEEcCCc--E-EEE-------eCCCeEEEEECC
Confidence            0111 1457788999987  4 344       679999999973

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.65  E-value=3.5e-15  Score=91.31  Aligned_cols=97  Identities=9%  Similarity=0.059  Sum_probs=75.0

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe--CCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS--KDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      +++.+++|++||........... +...+..+.|+|++..+++++  .|+.|++||+++.+....   ...+ -.+++++
T Consensus       216 ~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~---l~gH-~~~V~~l  290 (318)
T 4ggc_A          216 GGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE---LKGH-TSRVLSL  290 (318)
T ss_dssp             ECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE---ECCC-SSCEEEE
T ss_pred             ecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE---EcCC-CCCEEEE
Confidence            45678999999999877665544 777899999999988776654  799999999998776652   2222 2567788


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|+|++..+ +++       +.|++|+|||+.
T Consensus       291 ~~spdg~~l-~S~-------s~D~~v~iWd~~  314 (318)
T 4ggc_A          291 TMSPDGATV-ASA-------AADETLRLWRCF  314 (318)
T ss_dssp             EECTTSSCE-EEE-------ETTTEEEEECCS
T ss_pred             EEcCCCCEE-EEE-------ecCCeEEEEECC
Confidence            899988876 555       789999999973

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.65  E-value=1.6e-15  Score=94.59  Aligned_cols=97  Identities=14%  Similarity=-0.028  Sum_probs=77.7

Q ss_pred             cccccCeeeecCCC------------------CceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           2 KSWYEEYKRLDYHT------------------PIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         2 ~~~~d~~i~iw~~~------------------~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      +++.|+.+++||+.                  .++.+..+.+|...|.+++|+|++++|++++.|+.+++||++......
T Consensus       159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  238 (372)
T 1k8k_C          159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA  238 (372)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred             EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence            56789999999953                  567888888999999999999999999999999999999998876554


Q ss_pred             eecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          64 YSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        64 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .   ... .-.++..++|+|++..+++         +.++.|++|+++
T Consensus       239 ~---~~~-~~~~v~~~~~~~~~~~l~~---------~~d~~i~i~~~~  273 (372)
T 1k8k_C          239 T---LAS-ETLPLLAVTFITESSLVAA---------GHDCFPVLFTYD  273 (372)
T ss_dssp             E---EEC-SSCCEEEEEEEETTEEEEE---------ETTSSCEEEEEE
T ss_pred             E---Ecc-CCCCeEEEEEecCCCEEEE---------EeCCeEEEEEcc
Confidence            2   111 1245678899998876554         458889999973

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.64  E-value=2.6e-15  Score=94.19  Aligned_cols=102  Identities=14%  Similarity=0.088  Sum_probs=76.7

Q ss_pred             CcccccCe-eeecCCCCceeeeeee-c-ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee--eecc-----eee
Q psy8803           1 KKSWYEEY-KRLDYHTPIVETEVLT-Q-HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK--YSHD-----MKT   70 (111)
Q Consensus         1 ~~~~~d~~-i~iw~~~~~~~~~~~~-~-~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~--~~~~-----~~~   70 (111)
                      |+++.|++ |++||+.+++.+..+. + |...|.+++|+|++++|++++.|+++++||++......  ....     ...
T Consensus       211 ~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
T 3vu4_A          211 ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQ  290 (355)
T ss_dssp             EEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCC
T ss_pred             EEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccc
Confidence            46789998 9999999999999998 5 99999999999999999999999999999997542111  0000     000


Q ss_pred             eec------------CceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          71 FSW------------KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        71 ~~~------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ..|            .+...++|++++..+++ +       +.|+.+++|++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~-~-------~~dg~~~~~~~  334 (355)
T 3vu4_A          291 SEWSLCNFKLSVDKHVRGCKIAWISESSLVVV-W-------PHTRMIETFKV  334 (355)
T ss_dssp             CSSCSEEEECCCCTTCCCCEEEESSSSEEEEE-E-------TTTTEEEEEEE
T ss_pred             cccceeEEEeccCCCCCceEEEEeCCCCEEEE-E-------eCCCeEEEEEE
Confidence            001            11246789998877655 3       56899999986

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.64  E-value=2.1e-15  Score=94.80  Aligned_cols=102  Identities=18%  Similarity=0.122  Sum_probs=79.0

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCc-EEEEEeCCCeEEEEecCCCce-eeee-----------cce
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR-YFATCSKDGYILVWTSSYPSK-VKYS-----------HDM   68 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~i~iw~~~~~~~-~~~~-----------~~~   68 (111)
                      ++..|+.|++||+.+++.+..+.+|...|.+++|+|++. ++++++.|+.+++||++.... ....           ...
T Consensus       161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  240 (408)
T 4a11_B          161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA  240 (408)
T ss_dssp             EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred             EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence            467899999999999998999999999999999999987 699999999999999976431 1100           000


Q ss_pred             eeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          69 KTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ....-.++..++|+|++..+++ +       +.|+.|++||++
T Consensus       241 ~~~~~~~v~~~~~~~~~~~l~~-~-------~~dg~i~vwd~~  275 (408)
T 4a11_B          241 NTAHNGKVNGLCFTSDGLHLLT-V-------GTDNRMRLWNSS  275 (408)
T ss_dssp             SCSCSSCEEEEEECTTSSEEEE-E-------ETTSCEEEEETT
T ss_pred             cccccCceeEEEEcCCCCEEEE-e-------cCCCeEEEEECC
Confidence            0111245778899999888755 4       678999999974

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.1e-15  Score=103.93  Aligned_cols=101  Identities=20%  Similarity=0.299  Sum_probs=78.8

Q ss_pred             CcccccCeeeecCCC--CceeeeeeecccccEEEEEEcCC--CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHT--PIVETEVLTQHTHQVLHVSFSHN--GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~i~~s~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~   76 (111)
                      ++++.||+|++||+.  +++.+..+.+|.+.|.+++|+|+  ++.|++++.|+.|++||+..+...... ..... -.++
T Consensus        25 atg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~-~~~~h-~~~V  102 (753)
T 3jro_A           25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA-VHAVH-SASV  102 (753)
T ss_dssp             EEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEE-EECCC-SSCE
T ss_pred             EEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccc-cccCC-CCCe
Confidence            367789999999998  55778888999999999999988  999999999999999999876421100 01111 2467


Q ss_pred             eeEEEccC--CCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNES--DTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~--~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .+++|+|+  +..+ +++       +.|+.|++||++
T Consensus       103 ~~v~~sp~~~~~~l-~sg-------s~dg~I~vwdl~  131 (753)
T 3jro_A          103 NSVQWAPHEYGPLL-LVA-------SSDGKVSVVEFK  131 (753)
T ss_dssp             EEEEECCGGGCSEE-EEE-------ETTSEEEEEECC
T ss_pred             EEEEECCCCCCCEE-EEE-------eCCCcEEEEEee
Confidence            78889998  6665 555       789999999974

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.64  E-value=3.2e-15  Score=96.11  Aligned_cols=102  Identities=5%  Similarity=-0.050  Sum_probs=77.6

Q ss_pred             CcccccCeeeecCCC--Cceeeeeee--cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-eecceeeeecCc
Q psy8803           1 KKSWYEEYKRLDYHT--PIVETEVLT--QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFSWKY   75 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~--~~~~~~~~~--~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~   75 (111)
                      ++++.|++|++||+.  .++.+..+.  .|...|.+++|+|+++.|++++.++.+.+|++....... ........ -.+
T Consensus       119 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h-~~~  197 (450)
T 2vdu_B          119 ACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH-VSM  197 (450)
T ss_dssp             EEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC-SSC
T ss_pred             EEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc-cCc
Confidence            356789999999999  787777776  567899999999999999999999999999997654321 10011111 245


Q ss_pred             eeeEEEccC---CCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNES---DTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +++++|+|+   +.. ++++       +.|+.|++||++
T Consensus       198 v~~~~~sp~~~~~~~-l~s~-------~~d~~i~vwd~~  228 (450)
T 2vdu_B          198 LTDVHLIKDSDGHQF-IITS-------DRDEHIKISHYP  228 (450)
T ss_dssp             EEEEEEEECTTSCEE-EEEE-------ETTSCEEEEEES
T ss_pred             eEEEEEcCCCCCCcE-EEEE-------cCCCcEEEEECC
Confidence            678889998   545 4666       789999999974

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.64  E-value=3.5e-15  Score=94.15  Aligned_cols=97  Identities=12%  Similarity=0.173  Sum_probs=79.9

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +++.|+.|++||+..++.+..+.+|...|.++.|+|++ .+++++.|+.+++||++.......   .. ..-.++..++|
T Consensus       264 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~---~~-~~~~~i~~~~~  338 (425)
T 1r5m_A          264 SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL---SI-VDGVPIFAGRI  338 (425)
T ss_dssp             EEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE---EE-CTTCCEEEEEE
T ss_pred             EEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe---cc-cCCccEEEEEE
Confidence            56789999999999999888999999999999999999 999999999999999988765542   11 11145678899


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|++..+++ +       +.++.|++||++
T Consensus       339 s~~~~~l~~-~-------~~dg~i~i~~~~  360 (425)
T 1r5m_A          339 SQDGQKYAV-A-------FMDGQVNVYDLK  360 (425)
T ss_dssp             CTTSSEEEE-E-------ETTSCEEEEECH
T ss_pred             cCCCCEEEE-E-------ECCCeEEEEECC
Confidence            999887654 4       678999999973

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.63  E-value=4.6e-15  Score=95.41  Aligned_cols=102  Identities=11%  Similarity=0.041  Sum_probs=79.7

Q ss_pred             CcccccCeeeecCCCCceeeee-eecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeec---ceee------
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEV-LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSH---DMKT------   70 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~---~~~~------   70 (111)
                      ++++.|++|++||+.+++.+.. +.+|...|.+++|+ ++++|++++.|+.|++||++++.......   .+..      
T Consensus       214 ~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (450)
T 2vdu_B          214 ITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH  292 (450)
T ss_dssp             EEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred             EEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence            3567899999999998887776 56899999999999 99999999999999999999876543110   0000      


Q ss_pred             ------------eecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          71 ------------FSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        71 ------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                                  ..-..+..++|+|++..+++++       ..++.|++|++
T Consensus       293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-------~~d~~i~iw~~  337 (450)
T 2vdu_B          293 LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV-------EATKCIIILEM  337 (450)
T ss_dssp             BC----------CBCCCEEEEEECSSSSEEEEEE-------TTCSEEEEEEE
T ss_pred             cccccccccccccceEEEEEEEEeCCCCEEEEEE-------CCCCeEEEEEe
Confidence                        0012456789999998887765       57899999997

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.63  E-value=6.2e-15  Score=93.51  Aligned_cols=100  Identities=11%  Similarity=0.098  Sum_probs=80.4

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCC-cEEEEEe--CCCeEEEEecCCCceeeeecceeeeecCcee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNG-RYFATCS--KDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   77 (111)
                      ++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .++++++  .|+.+++||+++.......   . . -..+.
T Consensus       233 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~---~-~-~~~v~  307 (401)
T 4aez_A          233 ASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV---D-A-GSQVT  307 (401)
T ss_dssp             EEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE---E-C-SSCEE
T ss_pred             EEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE---e-C-CCcEE
Confidence            356789999999999999998999999999999999975 5677765  7999999999987665421   1 1 14577


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .++|+|++..+++++      +..++.|++||++
T Consensus       308 ~~~~s~~~~~l~~~~------g~~dg~i~v~~~~  335 (401)
T 4aez_A          308 SLIWSPHSKEIMSTH------GFPDNNLSIWSYS  335 (401)
T ss_dssp             EEEECSSSSEEEEEE------CTTTCEEEEEEEE
T ss_pred             EEEECCCCCeEEEEe------ecCCCcEEEEecC
Confidence            889999999887763      1579999999963

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.62  E-value=2.9e-15  Score=92.86  Aligned_cols=103  Identities=14%  Similarity=0.196  Sum_probs=73.8

Q ss_pred             CcccccCeeeecCCCCce-eeeeeecccccEEEEE------EcCCCcEEEEEeCCCeEEEEecCCCc-eeeeecceeeee
Q psy8803           1 KKSWYEEYKRLDYHTPIV-ETEVLTQHTHQVLHVS------FSHNGRYFATCSKDGYILVWTSSYPS-KVKYSHDMKTFS   72 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~v~~i~------~s~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~   72 (111)
                      ++++.|+.|++||+..++ .+..+.+|...|.++.      |+|+++.|++++.|+.+++||++... ............
T Consensus        84 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  163 (357)
T 3i2n_A           84 ATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN  163 (357)
T ss_dssp             EEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred             EEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC
Confidence            356789999999999887 8888999999999995      57889999999999999999998754 222110000000


Q ss_pred             cCceeeEE----EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          73 WKYTQYSQ----FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        73 ~~~~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      -..+..++    |+|++..++ ++       +.++.|++||++
T Consensus       164 ~~~v~~~~~~~~~~~~~~~l~-~~-------~~d~~i~i~d~~  198 (357)
T 3i2n_A          164 KRDCWTVAFGNAYNQEERVVC-AG-------YDNGDIKLFDLR  198 (357)
T ss_dssp             CCCEEEEEEECCCC-CCCEEE-EE-------ETTSEEEEEETT
T ss_pred             CCceEEEEEEeccCCCCCEEE-EE-------ccCCeEEEEECc
Confidence            01344455    677777664 44       678999999975

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.62  E-value=6.5e-15  Score=103.77  Aligned_cols=99  Identities=18%  Similarity=0.207  Sum_probs=81.4

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcC--CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSH--NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      |+++.|++|++||+.+++.+..+.+|...|.++.|+|  ++..+++++.|+.+++||++++.....   .... -.+++.
T Consensus       673 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~---~~~h-~~~v~~  748 (1249)
T 3sfz_A          673 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT---MFGH-TNSVNH  748 (1249)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE---ECCC-SSCEEE
T ss_pred             EEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe---ecCC-CCCEEE
Confidence            4677899999999999999999999999999999999  456899999999999999998765542   1111 145678


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++|+|++..++ ++       +.|+.|++||++
T Consensus       749 ~~~sp~~~~l~-s~-------s~dg~v~vwd~~  773 (1249)
T 3sfz_A          749 CRFSPDDELLA-SC-------SADGTLRLWDVR  773 (1249)
T ss_dssp             EEECSSTTEEE-EE-------ESSSEEEEEEGG
T ss_pred             EEEecCCCEEE-EE-------ECCCeEEEEeCC
Confidence            88999888764 45       689999999973

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.62  E-value=9.5e-15  Score=96.13  Aligned_cols=101  Identities=15%  Similarity=0.089  Sum_probs=80.7

Q ss_pred             cccccCeeeecCCCCceeeeeeecccc---cEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCcee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTH---QVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~---~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   77 (111)
                      +++.|+.|++||..+++.+..+.+|..   .|.+++|+|+ +++|++++.|+.+++||++..+............-.++.
T Consensus       178 ~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~  257 (615)
T 1pgu_A          178 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF  257 (615)
T ss_dssp             EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred             EEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceE
Confidence            567899999999999999999999999   9999999999 999999999999999999887665422000001125677


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .++|+ ++..++ ++       +.|+.|++||++
T Consensus       258 ~~~~~-~~~~l~-~~-------~~d~~i~~wd~~  282 (615)
T 1pgu_A          258 ALSWL-DSQKFA-TV-------GADATIRVWDVT  282 (615)
T ss_dssp             EEEES-SSSEEE-EE-------ETTSEEEEEETT
T ss_pred             EEEEc-CCCEEE-EE-------cCCCcEEEEECC
Confidence            88999 776664 44       678999999974

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.62  E-value=6.9e-15  Score=92.17  Aligned_cols=107  Identities=10%  Similarity=0.005  Sum_probs=75.4

Q ss_pred             cccCeeeecCCCC-ceeeeeeecccccEEEEEEcC---CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           4 WYEEYKRLDYHTP-IVETEVLTQHTHQVLHVSFSH---NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         4 ~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~i~~s~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      ..|+.|++|++.+ ++.+..+.+|...+..++|++   ++..|++++.|++|+|||+++++.......-. .....+..+
T Consensus       154 g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~-~~v~~v~~v  232 (356)
T 2w18_A          154 LSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD-SYQASVCHK  232 (356)
T ss_dssp             STTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----CCCEEE
T ss_pred             CCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC-cceeeeEEE
Confidence            3699999999954 788888889999999999999   67999999999999999999987665211000 001234567


Q ss_pred             EEccCCCEEEEeccccC----CccccCceEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFG----TPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~----~~~~~~~~i~iw~~~  111 (111)
                      +|+|++..+++...+..    ..++.|++|++||.+
T Consensus       233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~  268 (356)
T 2w18_A          233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK  268 (356)
T ss_dssp             EEEETTEEEEEEC------------CCEEEEEEETT
T ss_pred             EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence            89998876643221100    112789999999963

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.61  E-value=9e-15  Score=93.64  Aligned_cols=95  Identities=20%  Similarity=0.262  Sum_probs=75.0

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.||+|++||..+++.+..+.+|.+.|.+++|  +++.|++++.|+.|++||++++......   .. ...++.+++
T Consensus       147 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~-h~~~v~~l~  220 (435)
T 1p22_A          147 VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL---IH-HCEAVLHLR  220 (435)
T ss_dssp             EEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE---CC-CCSCEEEEE
T ss_pred             EEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEE---cC-CCCcEEEEE
Confidence            35788999999999999999999999999999998  7899999999999999999987655421   11 113455566


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |++  .. ++++       +.|+.|++||++
T Consensus       221 ~~~--~~-l~s~-------s~dg~i~vwd~~  241 (435)
T 1p22_A          221 FNN--GM-MVTC-------SKDRSIAVWDMA  241 (435)
T ss_dssp             CCT--TE-EEEE-------ETTSCEEEEECS
T ss_pred             EcC--CE-EEEe-------eCCCcEEEEeCC
Confidence            653  34 4566       789999999974

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.61  E-value=3.9e-15  Score=91.96  Aligned_cols=98  Identities=15%  Similarity=0.015  Sum_probs=75.9

Q ss_pred             CcccccCeeeecCCCCce---eeeeeecccccEEEEEEcCCCc-EEEEEeCCCeEEEEec-CCCceeeeecceee-eecC
Q psy8803           1 KKSWYEEYKRLDYHTPIV---ETEVLTQHTHQVLHVSFSHNGR-YFATCSKDGYILVWTS-SYPSKVKYSHDMKT-FSWK   74 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~---~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~i~iw~~-~~~~~~~~~~~~~~-~~~~   74 (111)
                      ++++.|+.|++|++..+.   ....+.+|...|.+++|+|+++ .|++++.|+.|++||+ .......    ... ..-.
T Consensus        27 ~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~----~~~~~~~~  102 (342)
T 1yfq_A           27 LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA----LTNNEANL  102 (342)
T ss_dssp             EEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEE----CBSCCCCS
T ss_pred             EEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEe----ccccCCCC
Confidence            356789999999998765   3455568999999999999999 9999999999999999 7765432    111 0114


Q ss_pred             ceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++..++|+| +..+ +++       +.|+.|++||++
T Consensus       103 ~v~~l~~~~-~~~l-~s~-------~~d~~i~iwd~~  130 (342)
T 1yfq_A          103 GICRICKYG-DDKL-IAA-------SWDGLIEVIDPR  130 (342)
T ss_dssp             CEEEEEEET-TTEE-EEE-------ETTSEEEEECHH
T ss_pred             ceEEEEeCC-CCEE-EEE-------cCCCeEEEEccc
Confidence            567888998 6665 455       689999999963

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.60  E-value=3e-14  Score=89.62  Aligned_cols=97  Identities=8%  Similarity=0.037  Sum_probs=78.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEE-EEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYF-ATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +++.|+.|++||+.+++.+..+..|. .+.+++|+|+++.+ ++++.++.|++||+.+++....   +.. . ..+..++
T Consensus         7 s~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~---~~~-~-~~v~~~~   80 (391)
T 1l0q_A            7 ANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT---VPA-G-SSPQGVA   80 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE---EEC-S-SSEEEEE
T ss_pred             EcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE---EEC-C-CCccceE
Confidence            56789999999999999888888665 58999999999865 6777899999999988765542   111 1 2567889


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..+++++       ..++.|++||++
T Consensus        81 ~spdg~~l~~~~-------~~~~~v~v~d~~  104 (391)
T 1l0q_A           81 VSPDGKQVYVTN-------MASSTLSVIDTT  104 (391)
T ss_dssp             ECTTSSEEEEEE-------TTTTEEEEEETT
T ss_pred             ECCCCCEEEEEE-------CCCCEEEEEECC
Confidence            999999988877       778999999974

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.59  E-value=8.3e-15  Score=89.35  Aligned_cols=98  Identities=14%  Similarity=-0.022  Sum_probs=73.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.||.|++||+.+++....+..|...|.+++|+|+++.|++++.|+.+++|++............... -.++..++
T Consensus        33 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~-~~~i~~~~  111 (313)
T 3odt_A           33 ASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGH-QGNVCSLS  111 (313)
T ss_dssp             EEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCC-SSCEEEEE
T ss_pred             EEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhc-ccCEEEEE
Confidence            46788999999999999888888999999999999999999999999999999998764211100011111 13455666


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEee
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      |  ++..+ +++       +.++.|++||
T Consensus       112 ~--~~~~l-~~~-------~~d~~i~~~d  130 (313)
T 3odt_A          112 F--QDGVV-ISG-------SWDKTAKVWK  130 (313)
T ss_dssp             E--ETTEE-EEE-------ETTSEEEEEE
T ss_pred             e--cCCEE-EEE-------eCCCCEEEEc
Confidence            6  34454 555       7899999998

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.59  E-value=1.2e-14  Score=98.81  Aligned_cols=102  Identities=11%  Similarity=0.139  Sum_probs=77.1

Q ss_pred             cccccCeeeecCCCCc--eeeeeeecccccEEEEEEcC-------------CCcEEEEEeCCCeEEEEecCCCceee-ee
Q psy8803           2 KSWYEEYKRLDYHTPI--VETEVLTQHTHQVLHVSFSH-------------NGRYFATCSKDGYILVWTSSYPSKVK-YS   65 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~i~~s~-------------~~~~l~s~~~d~~i~iw~~~~~~~~~-~~   65 (111)
                      +++.||+|++||+..+  .....+.+|...|.++.|+|             ++..+++++.|+.|++||++...... ..
T Consensus       118 sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~  197 (753)
T 3jro_A          118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  197 (753)
T ss_dssp             EEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             EEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence            5678999999999876  34556678999999999999             58999999999999999998753221 10


Q ss_pred             cceeeeecCceeeEEEccCC--CEEEEeccccCCccccCceEEEeecC
Q psy8803          66 HDMKTFSWKYTQYSQFNESD--TLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        66 ~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ...... -.++.+++|+|++  ..+++++       +.|+.|++||++
T Consensus       198 ~~~~~h-~~~V~~l~~sp~~~~~~~l~s~-------s~Dg~I~iwd~~  237 (753)
T 3jro_A          198 STLEGH-SDWVRDVAWSPTVLLRSYLASV-------SQDRTCIIWTQD  237 (753)
T ss_dssp             EEECCC-SSCEEEEEECCCCSSSEEEEEE-------ESSSCEEEEEES
T ss_pred             eeecCC-CCcEEEEEeccCCCCCCEEEEE-------ecCCEEEEecCC
Confidence            111111 2467788999984  4555666       789999999974

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.58  E-value=3.3e-14  Score=91.63  Aligned_cols=109  Identities=15%  Similarity=0.066  Sum_probs=74.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeee---cCcee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFS---WKYTQ   77 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~---~~~~~   77 (111)
                      |+++.||+|++||++++..+....+|...|.+++|+|++++|++++.|+.|++||++. .............   ...+.
T Consensus       166 as~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~v~  244 (434)
T 2oit_A          166 AVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEKKVIPCPPFYESDHPVRVL  244 (434)
T ss_dssp             EEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEEEEECCCTTCCTTSCEEEE
T ss_pred             EEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-cccccccCCcccCCCCceeEE
Confidence            3578899999999998877767778999999999999999999999999999999983 2222100000000   01456


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .++|+++...+++.....+.. .....+++|+++
T Consensus       245 ~v~w~~~~~~l~~~~~~dg~~-~~~~~v~i~~l~  277 (434)
T 2oit_A          245 DVLWIGTYVFAIVYAAADGTL-ETSPDVVMALLP  277 (434)
T ss_dssp             EEEEEETTEEEEEEEETTCCS-SSCCEEEEEECC
T ss_pred             EEEEecCceEEEEEccCCCcc-CCCCceEEEEec
Confidence            778888776665544221111 112348899874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.57  E-value=3.6e-14  Score=89.22  Aligned_cols=98  Identities=8%  Similarity=0.092  Sum_probs=78.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCC---CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN---GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      +++.|+.|++||+.+++....+. +...+.++.|++.   +.++++++.++.+++||++.......   .... -.++.+
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~~~-~~~v~~  191 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI---LQGH-RQEILA  191 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE---ECCC-CSCEEE
T ss_pred             EEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee---ecCC-CCcEEE
Confidence            56789999999999998887776 7788999999984   45999999999999999987654432   1111 145678


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++|+|++..+++++       +.|+.|++||++
T Consensus       192 ~~~~~~~~~ll~~~-------~~dg~i~i~d~~  217 (408)
T 4a11_B          192 VSWSPRYDYILATA-------SADSRVKLWDVR  217 (408)
T ss_dssp             EEECSSCTTEEEEE-------ETTSCEEEEETT
T ss_pred             EEECCCCCcEEEEE-------cCCCcEEEEECC
Confidence            88999988766777       789999999974

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.56  E-value=2.3e-14  Score=94.78  Aligned_cols=98  Identities=10%  Similarity=0.032  Sum_probs=69.8

Q ss_pred             CcccccCeeeecCCCCce-------eeeee----ecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeeccee
Q psy8803           1 KKSWYEEYKRLDYHTPIV-------ETEVL----TQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMK   69 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~-------~~~~~----~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~   69 (111)
                      |+++.||+|+|||+..++       .+..+    .+|...|.+++|+|||  +++++.|+.+++|++.............
T Consensus       145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~  222 (588)
T 2j04_A          145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ  222 (588)
T ss_dssp             EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred             EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence            467889999999999874       25665    5788899999999999  8888899999999998755310000111


Q ss_pred             eeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          70 TFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        70 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ...-..+..++|+  +..++++        + +++|++||++
T Consensus       223 ~~h~~~V~svaFs--g~~LASa--------~-~~tIkLWd~~  253 (588)
T 2j04_A          223 NASRRKITDLKIV--DYKVVLT--------C-PGYVHKIDLK  253 (588)
T ss_dssp             CCCSSCCCCEEEE--TTEEEEE--------C-SSEEEEEETT
T ss_pred             ccccCcEEEEEEE--CCEEEEE--------e-CCeEEEEECC
Confidence            1111346678888  4666553        3 5899999964

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.56  E-value=4.4e-14  Score=90.55  Aligned_cols=95  Identities=14%  Similarity=0.144  Sum_probs=71.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.||+|++||+.+++.+..+.+|.+.|.++.|+  ++.+++++.|+.|++||+.++.....   .... -.++.+++
T Consensus       133 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~h-~~~v~~~~  206 (445)
T 2ovr_B          133 VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT---LYGH-TSTVRCMH  206 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE---ECCC-SSCEEEEE
T ss_pred             EEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE---ECCC-CCcEEEEE
Confidence            367889999999999999999999999999999997  67999999999999999988765441   1111 13344555


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+  +.. ++++       +.|+.|++||++
T Consensus       207 ~~--~~~-l~s~-------s~dg~i~~wd~~  227 (445)
T 2ovr_B          207 LH--EKR-VVSG-------SRDATLRVWDIE  227 (445)
T ss_dssp             EE--TTE-EEEE-------ETTSEEEEEESS
T ss_pred             ec--CCE-EEEE-------eCCCEEEEEECC
Confidence            54  334 3445       678888888864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.55  E-value=5.4e-14  Score=89.50  Aligned_cols=99  Identities=10%  Similarity=0.042  Sum_probs=79.7

Q ss_pred             cccccCeeeecCCCCceeee-----eeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCce
Q psy8803           2 KSWYEEYKRLDYHTPIVETE-----VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYT   76 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~-----~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~   76 (111)
                      ++..|+.|++||..+++...     .+.+|...|.+++|+++++++++++.|+.+++||++.......   ... .-..+
T Consensus       139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~---~~~-~~~~~  214 (433)
T 3bws_A          139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT---VDL-TGKWS  214 (433)
T ss_dssp             EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE---EEC-SSSSE
T ss_pred             EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE---EcC-CCCCe
Confidence            45678899999999887766     4457888999999999999999999999999999987665442   111 11356


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..++|+|++..+++++       ..++.|++||++
T Consensus       215 ~~~~~~~~~~~l~~~~-------~~~~~i~~~d~~  242 (433)
T 3bws_A          215 KILLYDPIRDLVYCSN-------WISEDISVIDRK  242 (433)
T ss_dssp             EEEEEETTTTEEEEEE-------TTTTEEEEEETT
T ss_pred             eEEEEcCCCCEEEEEe-------cCCCcEEEEECC
Confidence            6889999999988877       678999999974

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.55  E-value=3.3e-14  Score=91.01  Aligned_cols=98  Identities=23%  Similarity=0.314  Sum_probs=72.4

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.||+|++||+.+++.+..+.+|...|.++.|+  +..+++++.|+.+++||++.............. -.++..++
T Consensus       187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~  263 (435)
T 1p22_A          187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVD  263 (435)
T ss_dssp             EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCC-SSCEEEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC-CCcEEEEE
Confidence            367889999999999999999999999999999996  469999999999999999875433210011111 13445556


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |  ++..+ +++       +.|+.|++||++
T Consensus       264 ~--~~~~l-~s~-------~~dg~i~vwd~~  284 (435)
T 1p22_A          264 F--DDKYI-VSA-------SGDRTIKVWNTS  284 (435)
T ss_dssp             E--ETTEE-EEE-------ETTSEEEEEETT
T ss_pred             e--CCCEE-EEE-------eCCCeEEEEECC
Confidence            6  44454 445       678889999874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.54  E-value=1.9e-13  Score=84.82  Aligned_cols=93  Identities=14%  Similarity=0.206  Sum_probs=69.9

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCC---CcEEEEEeCCCeEEEEecCC-CceeeeecceeeeecCceeeEEEcc
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHN---GRYFATCSKDGYILVWTSSY-PSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      .+..++..+.+.+..+.+|.+.|.+++|+|+   +++|++++.|+.|++||++. ......  .... .-.+++.++|+|
T Consensus        20 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~-h~~~v~~~~~~~   96 (368)
T 3mmy_A           20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK--AQQM-HTGPVLDVCWSD   96 (368)
T ss_dssp             ---CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE--EEEE-CSSCEEEEEECT
T ss_pred             EeccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE--Eecc-ccCCEEEEEECc
Confidence            3445666667788888999999999999999   69999999999999999986 433321  1111 125677888999


Q ss_pred             CCCEEEEeccccCCccccCceEEEeecC
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++..++ ++       +.|+.|++||++
T Consensus        97 ~~~~l~-s~-------~~dg~v~iwd~~  116 (368)
T 3mmy_A           97 DGSKVF-TA-------SCDKTAKMWDLS  116 (368)
T ss_dssp             TSSEEE-EE-------ETTSEEEEEETT
T ss_pred             CCCEEE-EE-------cCCCcEEEEEcC
Confidence            888775 44       679999999974

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.54  E-value=1.1e-13  Score=85.40  Aligned_cols=99  Identities=16%  Similarity=0.046  Sum_probs=74.2

Q ss_pred             cccccCeeeecCCCC-ce--eeeeeecccccEEEEEEcC-CCcEEEEEeCCCeEEEEecCCC------ceeeeecceeee
Q psy8803           2 KSWYEEYKRLDYHTP-IV--ETEVLTQHTHQVLHVSFSH-NGRYFATCSKDGYILVWTSSYP------SKVKYSHDMKTF   71 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~-~~--~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~------~~~~~~~~~~~~   71 (111)
                      ++..|+.|++||+.. +.  .......|...+.+++|+| +++.+++++.|+.+++|+++..      .....   ....
T Consensus       165 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~---~~~~  241 (342)
T 1yfq_A          165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA---FRCH  241 (342)
T ss_dssp             EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE---EECC
T ss_pred             EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee---eecc
Confidence            567899999999987 43  3334456888999999999 9999999999999999999765      22221   1111


Q ss_pred             e--------cCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          72 S--------WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        72 ~--------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .        ..++..++|+|++..++ ++       +.|+.|++||++
T Consensus       242 ~~~~~~~~~~~~i~~~~~s~~~~~l~-~~-------~~dg~i~vwd~~  281 (342)
T 1yfq_A          242 RLNLKDTNLAYPVNSIEFSPRHKFLY-TA-------GSDGIISCWNLQ  281 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEE-EE-------ETTSCEEEEETT
T ss_pred             cccccccccceeEEEEEEcCCCCEEE-Ee-------cCCceEEEEcCc
Confidence            0        12677889999887764 45       679999999974

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.52  E-value=4.9e-13  Score=84.09  Aligned_cols=97  Identities=10%  Similarity=-0.019  Sum_probs=76.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEE-EEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFA-TCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++..|++|++||..+++.+..+..+. .+.+++|+|+++.|+ +++.++.|++||+.+++.....   . . ...+..++
T Consensus        49 ~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~---~-~-~~~~~~~~  122 (391)
T 1l0q_A           49 ANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV---K-T-GKSPLGLA  122 (391)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---E-C-SSSEEEEE
T ss_pred             ECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE---e-C-CCCcceEE
Confidence            35589999999999999888877554 899999999998765 5556799999999987655421   1 1 13456789


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..+++++       +.++.|++||++
T Consensus       123 ~s~dg~~l~~~~-------~~~~~v~~~d~~  146 (391)
T 1l0q_A          123 LSPDGKKLYVTN-------NGDKTVSVINTV  146 (391)
T ss_dssp             ECTTSSEEEEEE-------TTTTEEEEEETT
T ss_pred             ECCCCCEEEEEe-------CCCCEEEEEECC
Confidence            999999887777       778999999974

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.52  E-value=1.3e-13  Score=88.35  Aligned_cols=54  Identities=15%  Similarity=0.107  Sum_probs=26.8

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~   58 (111)
                      ++.||+|++||+.+++.+..+.+|...|.++.|+  ++.+++++.|+.+++||++.
T Consensus       175 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~  228 (445)
T 2ovr_B          175 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET  228 (445)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS
T ss_pred             EeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC
Confidence            4445555555555555555555555555555552  33445555555555555444

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.49  E-value=1.6e-12  Score=82.67  Aligned_cols=105  Identities=6%  Similarity=0.006  Sum_probs=80.1

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEE-EEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFA-TCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++..|+.|++||+.+++.+..+..|...+.+++|+|+++.++ +++.++.|++||+++.........     ...+..++
T Consensus       186 s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~  260 (433)
T 3bws_A          186 SQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-----IGLPRGLL  260 (433)
T ss_dssp             EEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-----CSEEEEEE
T ss_pred             EECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-----CCCceEEE
Confidence            456789999999999988888888999999999999988774 555899999999988765542111     12356789


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..+++++...+.....++.|++||++
T Consensus       261 ~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~  291 (433)
T 3bws_A          261 LSKDGKELYIAQFSASNQESGGGRLGIYSMD  291 (433)
T ss_dssp             ECTTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred             EcCCCCEEEEEECCCCccccCCCeEEEEECC
Confidence            9999988877653333221258899999974

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.39  E-value=1.4e-11  Score=78.84  Aligned_cols=92  Identities=14%  Similarity=0.130  Sum_probs=70.8

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCC---eEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDG---YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      +.|++||+. +.....+.+|...+.+++|+|||+.|+.++.++   .|++||+++++....    .... ..+..++|+|
T Consensus       159 ~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l----~~~~-~~~~~~~~sp  232 (415)
T 2hqs_A          159 YELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV----ASFP-RHNGAPAFSP  232 (415)
T ss_dssp             EEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE----ECCS-SCEEEEEECT
T ss_pred             ceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe----ecCC-CcccCEEEcC
Confidence            799999997 555677788999999999999999999998775   999999988765431    1111 2456789999


Q ss_pred             CCCEEEEeccccCCcccc--CceEEEeecC
Q psy8803          84 SDTLLLVSGVHFGTPQST--SGEIAVFSLQ  111 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~--~~~i~iw~~~  111 (111)
                      ++..++.++       +.  +..|.+||++
T Consensus       233 dg~~la~~~-------~~~g~~~i~~~d~~  255 (415)
T 2hqs_A          233 DGSKLAFAL-------SKTGSLNLYVMDLA  255 (415)
T ss_dssp             TSSEEEEEE-------CTTSSCEEEEEETT
T ss_pred             CCCEEEEEE-------ecCCCceEEEEECC
Confidence            999888665       33  3458889864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.38  E-value=1.9e-11  Score=80.85  Aligned_cols=96  Identities=16%  Similarity=0.074  Sum_probs=76.1

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEec--CCCceeeeecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTS--SYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      +...|++|.+||..+++.+..+..+.. +..+.|+||++++++++.++.|.+||+  .+......   +..  -.....+
T Consensus       154 s~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~---i~~--g~~p~~v  227 (543)
T 1nir_A          154 TLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE---IKI--GIEARSV  227 (543)
T ss_dssp             EEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE---EEC--CSEEEEE
T ss_pred             EEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE---Eec--CCCcceE
Confidence            456789999999999999888873333 889999999999999999999999999  66554432   221  1345789


Q ss_pred             EEcc----CCCEEEEeccccCCccccCceEEEeec
Q psy8803          80 QFNE----SDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        80 ~~~~----~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +|+|    ++..++++.       ..+++|.+||.
T Consensus       228 a~sp~~~~dg~~l~v~~-------~~~~~v~v~D~  255 (543)
T 1nir_A          228 ESSKFKGYEDRYTIAGA-------YWPPQFAIMDG  255 (543)
T ss_dssp             EECCSTTCTTTEEEEEE-------EESSEEEEEET
T ss_pred             EeCCCcCCCCCEEEEEE-------ccCCeEEEEec
Confidence            9999    999887765       56888999985

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.27  E-value=5.9e-11  Score=71.45  Aligned_cols=85  Identities=15%  Similarity=0.116  Sum_probs=64.2

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC-CceeeeecceeeeecCceeeEEE
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY-PSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      ...|+.|++||+.+++.. .+..|...+.+++|+|+++.|++++ ++.|.+||+.. ........   ......+..++|
T Consensus        18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~   92 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT---GFATICNNDHGI   92 (297)
T ss_dssp             CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC---TTCCCBCSCCEE
T ss_pred             CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc---ccccccccceEE
Confidence            467899999999988765 4556889999999999999999987 77999999987 65443111   111123456889


Q ss_pred             ccCCCEEEEec
Q psy8803          82 NESDTLLLVSG   92 (111)
Q Consensus        82 ~~~~~~~~~~~   92 (111)
                      +|++..++++.
T Consensus        93 spdg~~l~~~~  103 (297)
T 2ojh_A           93 SPDGALYAISD  103 (297)
T ss_dssp             CTTSSEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence            99998887754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.25  E-value=2.8e-10  Score=72.88  Aligned_cols=91  Identities=11%  Similarity=0.052  Sum_probs=65.5

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEE-EEeCCC--eEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFA-TCSKDG--YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..|++||+.+++.. .+..|...+.+++|+|||+.|+ +++.++  .|.+||+.+......    ... ...+..++|+|
T Consensus       203 ~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l----~~~-~~~~~~~~~sp  276 (415)
T 2hqs_A          203 SALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV----TDG-RSNNTEPTWFP  276 (415)
T ss_dssp             CEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC----CCC-SSCEEEEEECT
T ss_pred             cEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC----cCC-CCcccceEECC
Confidence            48999999988764 5677888999999999999777 666555  499999987654321    111 13456788999


Q ss_pred             CCCEEEEeccccCCccccCc--eEEEeec
Q psy8803          84 SDTLLLVSGVHFGTPQSTSG--EIAVFSL  110 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~--~i~iw~~  110 (111)
                      ++..++.++       ..++  .|.+||+
T Consensus       277 dg~~l~~~s-------~~~g~~~i~~~d~  298 (415)
T 2hqs_A          277 DSQNLAFTS-------DQAGRPQVYKVNI  298 (415)
T ss_dssp             TSSEEEEEE-------CTTSSCEEEEEET
T ss_pred             CCCEEEEEE-------CCCCCcEEEEEEC
Confidence            999887765       2233  5777775

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.22  E-value=5.7e-10  Score=68.71  Aligned_cols=98  Identities=6%  Similarity=-0.050  Sum_probs=69.7

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe-CCCeEEEEecCCCce-eeeecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS-KDGYILVWTSSYPSK-VKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v   79 (111)
                      +...++.|.+||..+++.+..+..+.... .++|+|+++.++.++ .++.+.+||..+... ...   .. ....+...+
T Consensus        15 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~---~~-~~~~~~~~~   89 (331)
T 3u4y_A           15 VEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA---IQ-EGQSSMADV   89 (331)
T ss_dssp             EEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE---EE-ECSSCCCCE
T ss_pred             EecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe---cc-cCCCCccce
Confidence            45678999999999998877777666667 999999998655554 488999999987665 321   11 111233338


Q ss_pred             EEccCCCEEEEeccccCCccccCc--eEEEeecC
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSG--EIAVFSLQ  111 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~--~i~iw~~~  111 (111)
                      +|+|++..+++..       ..++  .|.+||++
T Consensus        90 ~~s~dg~~l~~~~-------~~~~~~~i~v~d~~  116 (331)
T 3u4y_A           90 DITPDDQFAVTVT-------GLNHPFNMQSYSFL  116 (331)
T ss_dssp             EECTTSSEEEECC-------CSSSSCEEEEEETT
T ss_pred             EECCCCCEEEEec-------CCCCcccEEEEECC
Confidence            9999999887432       2223  89999974

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.19  E-value=5.1e-10  Score=68.86  Aligned_cols=97  Identities=13%  Similarity=0.046  Sum_probs=69.2

Q ss_pred             ccccCeeeecCCC-Cc--eeeeeeecccccEEEEEEcCCCcEEEEEeCC-CeEEEEecC--CCceeeeecceeeeecCce
Q psy8803           3 SWYEEYKRLDYHT-PI--VETEVLTQHTHQVLHVSFSHNGRYFATCSKD-GYILVWTSS--YPSKVKYSHDMKTFSWKYT   76 (111)
Q Consensus         3 ~~~d~~i~iw~~~-~~--~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d-~~i~iw~~~--~~~~~~~~~~~~~~~~~~~   76 (111)
                      +..|+.|++|++. ++  +.+.. ..+...+.+++|+|+++.|++++.+ +.+.+|++.  .+..... ..+.. . ..+
T Consensus        11 ~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~-~-~~~   86 (343)
T 1ri6_A           11 SPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-AESAL-P-GSL   86 (343)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-EEEEC-S-SCC
T ss_pred             CCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec-ccccc-C-CCC
Confidence            3679999999985 23  23333 3477788999999999988888776 899999997  4332211 01111 1 245


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ..++|+|++..+++++       ..++.|.+||+
T Consensus        87 ~~~~~s~dg~~l~~~~-------~~~~~i~~~d~  113 (343)
T 1ri6_A           87 THISTDHQGQFVFVGS-------YNAGNVSVTRL  113 (343)
T ss_dssp             SEEEECTTSSEEEEEE-------TTTTEEEEEEE
T ss_pred             cEEEEcCCCCEEEEEe-------cCCCeEEEEEC
Confidence            6789999999888776       56888999997

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.16  E-value=6.7e-10  Score=68.74  Aligned_cols=100  Identities=9%  Similarity=0.081  Sum_probs=75.5

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      .++.|.+||..+++.+..+..+...+..+.|+|+++.++.++.++.+.+||..+.+..................++|+|+
T Consensus       162 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  241 (353)
T 3vgz_A          162 KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA  241 (353)
T ss_dssp             SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT
T ss_pred             CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC
Confidence            47889999999998888777566668899999999999999889999999998876554211100000123456899999


Q ss_pred             CCEEEEeccccCCccccCceEEEeecC
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +..++++.       ..++.|.+||++
T Consensus       242 g~~l~~~~-------~~~~~v~~~d~~  261 (353)
T 3vgz_A          242 RQRAFITD-------SKAAEVLVVDTR  261 (353)
T ss_dssp             TTEEEEEE-------SSSSEEEEEETT
T ss_pred             CCEEEEEe-------CCCCEEEEEECC
Confidence            99887776       567889999863

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.16  E-value=2.7e-10  Score=70.16  Aligned_cols=99  Identities=13%  Similarity=0.123  Sum_probs=67.9

Q ss_pred             cccCeeeecCC---CCceeeeeeecccccEEEEEEcCCCcEEEEEe-CCCeEEEEecCC-Cceeeeec-ceeeeecCcee
Q psy8803           4 WYEEYKRLDYH---TPIVETEVLTQHTHQVLHVSFSHNGRYFATCS-KDGYILVWTSSY-PSKVKYSH-DMKTFSWKYTQ   77 (111)
Q Consensus         4 ~~d~~i~iw~~---~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~-~~~~~~~~-~~~~~~~~~~~   77 (111)
                      ..++.|.+||+   ...+....+.. ...+.+++|+|+++.++.++ .++.+.+||+.. +....... .........+.
T Consensus       103 ~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~  181 (343)
T 1ri6_A          103 YNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR  181 (343)
T ss_dssp             TTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEE
T ss_pred             cCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcc
Confidence            34788999999   33444444443 34688999999998777776 789999999986 43322100 01100112456


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .++|+|++..+++++       ..++.|.+||+
T Consensus       182 ~~~~~pdg~~l~~~~-------~~~~~i~~~~~  207 (343)
T 1ri6_A          182 HMVFHPNEQYAYCVN-------ELNSSVDVWEL  207 (343)
T ss_dssp             EEEECTTSSEEEEEE-------TTTTEEEEEES
T ss_pred             eEEECCCCCEEEEEe-------CCCCEEEEEEe
Confidence            789999999887776       67888999997

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.16  E-value=7.6e-11  Score=79.54  Aligned_cols=93  Identities=12%  Similarity=0.050  Sum_probs=70.7

Q ss_pred             cccCeeeecCCCCceeeeeeecccc---cEEEEEEcCCCcEEEEEeC---------CCeEEEEecCCCceeeeecceeee
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTH---QVLHVSFSHNGRYFATCSK---------DGYILVWTSSYPSKVKYSHDMKTF   71 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~---~v~~i~~s~~~~~l~s~~~---------d~~i~iw~~~~~~~~~~~~~~~~~   71 (111)
                      ..|++|++||+..++....+.++..   .+..++|||||+.|+.++.         ++.+++||+.++..... ..+.  
T Consensus        33 ~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l~--  109 (719)
T 1z68_A           33 SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-NELP--  109 (719)
T ss_dssp             CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCCC--
T ss_pred             cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-eecC--
Confidence            3589999999998887766665544   3899999999999998876         68999999988765210 0111  


Q ss_pred             ecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          72 SWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                        ..+..++|+|++..++.+         .++.|.+||+
T Consensus       110 --~~~~~~~~SPDG~~la~~---------~~~~i~~~~~  137 (719)
T 1z68_A          110 --RPIQYLCWSPVGSKLAYV---------YQNNIYLKQR  137 (719)
T ss_dssp             --SSBCCEEECSSTTCEEEE---------ETTEEEEESS
T ss_pred             --cccccceECCCCCEEEEE---------ECCeEEEEeC
Confidence              235578999999988774         3678999986

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.14  E-value=1.9e-10  Score=77.48  Aligned_cols=97  Identities=11%  Similarity=0.021  Sum_probs=70.5

Q ss_pred             ccccCeeeecCCCCceeeeeeecccc---cEEEEEEcCCCcEEEEEeCC---------CeEEEEecCCCceeeeecceee
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTH---QVLHVSFSHNGRYFATCSKD---------GYILVWTSSYPSKVKYSHDMKT   70 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~---~v~~i~~s~~~~~l~s~~~d---------~~i~iw~~~~~~~~~~~~~~~~   70 (111)
                      ++.||+|++||..+++....+..|..   .+..++|||||+.|+.++.+         +.+.+||+.++....... ...
T Consensus        33 ~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~  111 (723)
T 1xfd_A           33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP-PEV  111 (723)
T ss_dssp             CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC-TTC
T ss_pred             EeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC-Ccc
Confidence            35789999999998887777776654   48999999999999998764         678899998765422110 000


Q ss_pred             eecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          71 FSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      . -..+..++|+|++..++...         ++.|.+||+
T Consensus       112 ~-~~~~~~~~~SPdG~~la~~~---------~~~i~~~~~  141 (723)
T 1xfd_A          112 S-NAKLQYAGWGPKGQQLIFIF---------ENNIYYCAH  141 (723)
T ss_dssp             C-SCCCSBCCBCSSTTCEEEEE---------TTEEEEESS
T ss_pred             c-cccccccEECCCCCEEEEEE---------CCeEEEEEC
Confidence            0 01245678899998887744         367999986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.12  E-value=1.2e-09  Score=67.85  Aligned_cols=98  Identities=9%  Similarity=0.053  Sum_probs=67.2

Q ss_pred             cCeeeecCCCCce--eeeeeecccccEEEEEEcCCCcEEEEEe-CCCeEEEEecCCCceeeeecceeee--------ecC
Q psy8803           6 EEYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSHNGRYFATCS-KDGYILVWTSSYPSKVKYSHDMKTF--------SWK   74 (111)
Q Consensus         6 d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~--------~~~   74 (111)
                      ++.|.+|++..++  .+..+..+...+..++|+||++.|++++ .++.+.+|++...........+...        ...
T Consensus        62 ~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~  141 (347)
T 3hfq_A           62 EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGS  141 (347)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSC
T ss_pred             CceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCC
Confidence            6899999997664  4444455777888999999999888777 6789999999632111110011100        011


Q ss_pred             ceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .+..++|+|++. ++++.       ..++.|.+|+++
T Consensus       142 ~~~~~~~spdg~-l~v~~-------~~~~~v~~~~~~  170 (347)
T 3hfq_A          142 HIHYTDLTPDNR-LAVID-------LGSDKVYVYNVS  170 (347)
T ss_dssp             CEEEEEECTTSC-EEEEE-------TTTTEEEEEEEC
T ss_pred             CceEEEECCCCc-EEEEe-------CCCCEEEEEEEC
Confidence            356789999998 66766       667889999874

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.09  E-value=1.1e-09  Score=67.35  Aligned_cols=95  Identities=5%  Similarity=-0.014  Sum_probs=69.4

Q ss_pred             cccCeeeecCCCCcee-eeeeecccccEEEEEEcCCCcEEEEEeCCC---eEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           4 WYEEYKRLDYHTPIVE-TEVLTQHTHQVLHVSFSHNGRYFATCSKDG---YILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~-~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      ..++.|.+||..+++. ...+..+.....+++|+|+++.+++...++   .|.+||+........   +.. . .....+
T Consensus        59 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~---~~~-~-~~~~~~  133 (331)
T 3u4y_A           59 DFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST---IPI-P-YDAVGI  133 (331)
T ss_dssp             STTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE---EEC-C-TTEEEE
T ss_pred             CCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE---EEC-C-CCccce
Confidence            4478999999998876 666666665655599999999888555542   899999988765542   111 1 234688


Q ss_pred             EEccCCCEEEEeccccCCccccCce-EEEeec
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGE-IAVFSL  110 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~iw~~  110 (111)
                      +|+|++..++++.       ..++. |.+|++
T Consensus       134 ~~spdg~~l~~~~-------~~~~~~i~~~~~  158 (331)
T 3u4y_A          134 AISPNGNGLILID-------RSSANTVRRFKI  158 (331)
T ss_dssp             EECTTSSCEEEEE-------ETTTTEEEEEEE
T ss_pred             EECCCCCEEEEEe-------cCCCceEEEEEE
Confidence            9999998777766       55566 999986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.08  E-value=2.7e-09  Score=66.29  Aligned_cols=98  Identities=10%  Similarity=0.032  Sum_probs=65.1

Q ss_pred             ccCeeeecCCCC-c--eeeeeeec---------ccccEEEEEEcCCCcEEEEEeCCCeEEEEecC-CCceeeeecceeee
Q psy8803           5 YEEYKRLDYHTP-I--VETEVLTQ---------HTHQVLHVSFSHNGRYFATCSKDGYILVWTSS-YPSKVKYSHDMKTF   71 (111)
Q Consensus         5 ~d~~i~iw~~~~-~--~~~~~~~~---------~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~-~~~~~~~~~~~~~~   71 (111)
                      .++.+++|++.. +  ..+..+..         ....+.+++|+|+++++++...++.+.+|++. .+...... .....
T Consensus       106 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~-~~~~~  184 (347)
T 3hfq_A          106 HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQS-VLTME  184 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEE-EEECC
T ss_pred             CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEee-eEEcC
Confidence            678999999963 2  23333321         12347889999999977777778899999998 44322210 11111


Q ss_pred             ecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          72 SWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .......++|+|++..++++.       ..++.|.+|++
T Consensus       185 ~g~~p~~~~~spdg~~l~v~~-------~~~~~v~v~~~  216 (347)
T 3hfq_A          185 AGFGPRHLVFSPDGQYAFLAG-------ELSSQIASLKY  216 (347)
T ss_dssp             TTCCEEEEEECTTSSEEEEEE-------TTTTEEEEEEE
T ss_pred             CCCCCceEEECCCCCEEEEEe-------CCCCEEEEEEe
Confidence            112356789999999888876       67788999985

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.08  E-value=9.5e-10  Score=74.35  Aligned_cols=89  Identities=4%  Similarity=-0.025  Sum_probs=66.0

Q ss_pred             eeeecCCCCceeeeeeecccc------------------------cEEEEEEcCCCcEEEEEeCCCeEEEEecCCC---c
Q psy8803           8 YKRLDYHTPIVETEVLTQHTH------------------------QVLHVSFSHNGRYFATCSKDGYILVWTSSYP---S   60 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~------------------------~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~---~   60 (111)
                      .|.+||+.+++....+..+..                        .+..++|+|||+.|+.++. +.|.+||+.++   .
T Consensus        65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~  143 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA  143 (741)
T ss_dssp             EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS
T ss_pred             EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcce
Confidence            899999998876666554432                        3788999999999999886 89999999876   4


Q ss_pred             eeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          61 KVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ...    +... -..+..++|+|++..++...         ++.|.+||++
T Consensus       144 ~~~----l~~~-~~~~~~~~~SPDG~~la~~~---------~~~i~~~d~~  180 (741)
T 2ecf_A          144 VRQ----LTHG-EGFATDAKLSPKGGFVSFIR---------GRNLWVIDLA  180 (741)
T ss_dssp             CCB----CCCS-SSCEEEEEECTTSSEEEEEE---------TTEEEEEETT
T ss_pred             EEE----cccC-CcccccccCCCCCCEEEEEe---------CCcEEEEecC
Confidence            322    1111 13456788999999887743         5579999863

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.08  E-value=5.7e-09  Score=69.11  Aligned_cols=101  Identities=7%  Similarity=-0.034  Sum_probs=75.8

Q ss_pred             cccccCeeeecCC--CCceeeeeeecccccEEEEEEcC----CCcEEEEEeC-CCeEEEEecCCCceeeeecc----eee
Q psy8803           2 KSWYEEYKRLDYH--TPIVETEVLTQHTHQVLHVSFSH----NGRYFATCSK-DGYILVWTSSYPSKVKYSHD----MKT   70 (111)
Q Consensus         2 ~~~~d~~i~iw~~--~~~~~~~~~~~~~~~v~~i~~s~----~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~----~~~   70 (111)
                      +++.|++|++||+  .+++.+..+. +......++|+|    |++++++++. ++.+.+||..+.+.......    +..
T Consensus       195 v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~  273 (543)
T 1nir_A          195 VIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT  273 (543)
T ss_dssp             EEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             EECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence            3566799999999  7788888877 455789999999    9999888874 89999999988766542110    000


Q ss_pred             ---eecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          71 ---FSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        71 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                         .....+..+.++|++..++++.       ..+++|.+||+
T Consensus       274 ~~~~~~~~v~~i~~s~~~~~~~vs~-------~~~g~i~vvd~  309 (543)
T 1nir_A          274 QTYHPEPRVAAIIASHEHPEFIVNV-------KETGKVLLVNY  309 (543)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEE-------TTTTEEEEEEC
T ss_pred             cccccCCceEEEEECCCCCEEEEEE-------CCCCeEEEEEe
Confidence               0011356788999888888887       77899999986

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.07  E-value=5.2e-10  Score=74.00  Aligned_cols=95  Identities=14%  Similarity=-0.009  Sum_probs=67.4

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCC--eEEEEecCCCceee---eecceeeeecCceeeEEE
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDG--YILVWTSSYPSKVK---YSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~--~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~v~~   81 (111)
                      +.|.+||+.+++.. .+..|.+.+..++|+|||+.|+++..++  .|.+||+.++....   +...+....-......+|
T Consensus       175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (582)
T 3o4h_A          175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGY  253 (582)
T ss_dssp             EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEE
T ss_pred             eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeE
Confidence            67999999877654 6778888999999999999999888888  89999998765442   111111111000112238


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +|++ .+++++       +.++.+++|++
T Consensus       254 spdg-~~~~~~-------~~~g~~~l~~~  274 (582)
T 3o4h_A          254 LPDG-RLAVVA-------RREGRSAVFID  274 (582)
T ss_dssp             CTTS-CEEEEE-------EETTEEEEEET
T ss_pred             cCCC-cEEEEE-------EcCCcEEEEEE
Confidence            9999 666666       77889999985

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.05  E-value=9.3e-09  Score=63.60  Aligned_cols=96  Identities=10%  Similarity=0.004  Sum_probs=71.8

Q ss_pred             ccccCeeeecCCCCceeeeeeec----ccccEEEEEEcCCCcEEEEEe-CCCeEEEEecCCCceeeeecceeeeecCcee
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQ----HTHQVLHVSFSHNGRYFATCS-KDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~----~~~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   77 (111)
                      +..++.+.+||..+++.+..+..    +...+..++|+|+++.++.++ .++.+.+||..+.+...... .     ....
T Consensus       202 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~-----~~~~  275 (353)
T 3vgz_A          202 TNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA-A-----PESL  275 (353)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE-C-----SSCC
T ss_pred             EcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE-c-----CCCc
Confidence            34588999999998887776653    556788899999998665554 45899999998876554211 1     1224


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .++|+|++..++++.       ..++.|.+||++
T Consensus       276 ~~~~s~dg~~l~v~~-------~~~~~v~~~d~~  302 (353)
T 3vgz_A          276 AVLFNPARNEAYVTH-------RQAGKVSVIDAK  302 (353)
T ss_dssp             CEEEETTTTEEEEEE-------TTTTEEEEEETT
T ss_pred             eEEECCCCCEEEEEE-------CCCCeEEEEECC
Confidence            689999999887776       678899999963

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.05  E-value=2.6e-09  Score=65.93  Aligned_cols=109  Identities=6%  Similarity=-0.081  Sum_probs=71.6

Q ss_pred             cccccCeeeecCCCCceeeeeeeccc-ccEEEEEEcCCCcE-EEEEeCCCeEEEEecCCCceeeeecceeee---ecCce
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHT-HQVLHVSFSHNGRY-FATCSKDGYILVWTSSYPSKVKYSHDMKTF---SWKYT   76 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~~i~~s~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~---~~~~~   76 (111)
                      +...+++|.+||..+++.+..+..+. ..+..++|+|+++. +++...++.|.+||+.+.+...... ....   ....+
T Consensus        16 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~-~~~~~~~~~~~~   94 (349)
T 1jmx_B           16 VTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN-LSSVPGEVGRSM   94 (349)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-SCCSTTEEEECS
T ss_pred             EeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE-cccccccccccc
Confidence            45678999999999988877776433 25778999999975 4556678999999998876543111 0000   00124


Q ss_pred             eeEEEccCCCEEEEecccc----CCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHF----GTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~----~~~~~~~~~i~iw~~~  111 (111)
                      ..++|+|++..++++..+.    ......++.|.+||++
T Consensus        95 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~  133 (349)
T 1jmx_B           95 YSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA  133 (349)
T ss_dssp             SCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred             cceEECCCCCEEEEEcccccccccccccCCCeEEEEECC
Confidence            5789999999887765110    0000014789999963

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.02  E-value=5.2e-09  Score=73.57  Aligned_cols=101  Identities=8%  Similarity=-0.022  Sum_probs=70.9

Q ss_pred             cCeee-ecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           6 EEYKR-LDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         6 d~~i~-iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      +..+. +|+...++.. .+.+|...+..++|+|||+.|+.++.++.+++||+.++......    ......+..++|+|+
T Consensus       357 ~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~----~~~~~~v~~~~~SpD  431 (1045)
T 1k32_A          357 EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE----RSREAMITDFTISDN  431 (1045)
T ss_dssp             TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----ECSSSCCCCEEECTT
T ss_pred             CCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec----cCCCCCccceEECCC
Confidence            45677 7888766543 44478889999999999999999999999999999887654321    011134567889999


Q ss_pred             CCEEEEecccc--CCccccCceEEEeecC
Q psy8803          85 DTLLLVSGVHF--GTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        85 ~~~~~~~~~~~--~~~~~~~~~i~iw~~~  111 (111)
                      +..++.++.+.  ......++.|.+||++
T Consensus       432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          432 SRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             SCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             CCeEEEEecCccccccCCCCCeEEEEECC
Confidence            99887765221  0001234689999973

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.02  E-value=8e-09  Score=64.50  Aligned_cols=97  Identities=10%  Similarity=0.035  Sum_probs=65.0

Q ss_pred             cccCeeeecCCCCcee--eeeee---cccccEEEEEEcCCCcEEEEEeC--CCeEEEEecC--CCceeeeecceeeeecC
Q psy8803           4 WYEEYKRLDYHTPIVE--TEVLT---QHTHQVLHVSFSHNGRYFATCSK--DGYILVWTSS--YPSKVKYSHDMKTFSWK   74 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~--~~~~~---~~~~~v~~i~~s~~~~~l~s~~~--d~~i~iw~~~--~~~~~~~~~~~~~~~~~   74 (111)
                      ..++.|.+|++..++.  +..+.   .+......++|+||+++|+.+..  ++.+.+|++.  ++.... ......  -.
T Consensus       230 ~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~-~~~~~~--g~  306 (361)
T 3scy_A          230 EIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTK-VGYQLT--GI  306 (361)
T ss_dssp             TTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEE-EEEEEC--SS
T ss_pred             CCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEE-eeEecC--CC
Confidence            3578999999986643  22222   23345689999999998766654  4899999996  333211 111111  13


Q ss_pred             ceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .+..++|+|++..++++.       ..++.|.+|++
T Consensus       307 ~~~~~~~spdg~~l~~~~-------~~~~~v~v~~~  335 (361)
T 3scy_A          307 HPRNFIITPNGKYLLVAC-------RDTNVIQIFER  335 (361)
T ss_dssp             CCCEEEECTTSCEEEEEE-------TTTTEEEEEEE
T ss_pred             CCceEEECCCCCEEEEEE-------CCCCCEEEEEE
Confidence            456789999999888876       56788999754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.02  E-value=4.9e-09  Score=64.32  Aligned_cols=110  Identities=9%  Similarity=0.012  Sum_probs=71.5

Q ss_pred             cccccCeeeecCCCCceeeeeeecccc--cEEEEEEcCCCcE-EEEEeCCCeEEEEecCCCceeeeec-ceeeeecCcee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTH--QVLHVSFSHNGRY-FATCSKDGYILVWTSSYPSKVKYSH-DMKTFSWKYTQ   77 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~--~v~~i~~s~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~~~~~~   77 (111)
                      ++..++.|.+||..+++.+..+.....  .+..++|+|+++. +++...++.|.+||+.+.+...... ......-..+.
T Consensus         6 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~   85 (337)
T 1pby_B            6 APARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF   85 (337)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred             EcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc
Confidence            456799999999999888777763221  5788999999865 5666678899999998876543110 00000001345


Q ss_pred             eEEEccCCCEEEEeccccCCccc----cCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQS----TSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~----~~~~i~iw~~~  111 (111)
                      .++|+|++..++++.........    .++.|.+||++
T Consensus        86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~  123 (337)
T 1pby_B           86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE  123 (337)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred             ceEECCCCCEEEEEecccccccccccccCceEEEEECC
Confidence            78999999888775311000000    36889999863

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.97  E-value=1.9e-08  Score=62.85  Aligned_cols=99  Identities=9%  Similarity=0.088  Sum_probs=64.8

Q ss_pred             cccCeeeecCCCCcee------e-------eeeecccccEEEEEEcCCCcEEEEEe-CCCeEEEEecCCCceeeeeccee
Q psy8803           4 WYEEYKRLDYHTPIVE------T-------EVLTQHTHQVLHVSFSHNGRYFATCS-KDGYILVWTSSYPSKVKYSHDMK   69 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~------~-------~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~   69 (111)
                      ..++.+.+|++.....      +       .....+......++|+||++.++.++ .++.+.+|++..+..... ..+.
T Consensus       174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~-~~~~  252 (361)
T 3scy_A          174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI-QTVA  252 (361)
T ss_dssp             TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE-EEEE
T ss_pred             CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe-EEEe
Confidence            3477899998764321      1       11123445678999999999776666 688999999986543221 0111


Q ss_pred             e--eecCceeeEEEccCCCEEEEeccccCCcccc-CceEEEeec
Q psy8803          70 T--FSWKYTQYSQFNESDTLLLVSGVHFGTPQST-SGEIAVFSL  110 (111)
Q Consensus        70 ~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~i~iw~~  110 (111)
                      .  ........++|+|++..++++.       .. ++.|.+|++
T Consensus       253 ~~~~~~~~~~~i~~spdg~~l~v~~-------~~~~~~i~v~~~  289 (361)
T 3scy_A          253 ADTVNAQGSGDIHLSPDGKYLYASN-------RLKADGVAIFKV  289 (361)
T ss_dssp             SCSSCCCCEEEEEECTTSSEEEEEE-------CSSSCEEEEEEE
T ss_pred             cCCCCCCCcccEEECCCCCEEEEEC-------CCCCCEEEEEEE
Confidence            1  0112345789999999887766       44 678999987

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.95  E-value=7.7e-08  Score=60.43  Aligned_cols=98  Identities=6%  Similarity=0.051  Sum_probs=66.4

Q ss_pred             ccCeeeecCCC-Cceeeeeee----cccccEEEEEEcCCCcEEEEEeC-CCeEEEEecC-CCceeeeecceee-eecCce
Q psy8803           5 YEEYKRLDYHT-PIVETEVLT----QHTHQVLHVSFSHNGRYFATCSK-DGYILVWTSS-YPSKVKYSHDMKT-FSWKYT   76 (111)
Q Consensus         5 ~d~~i~iw~~~-~~~~~~~~~----~~~~~v~~i~~s~~~~~l~s~~~-d~~i~iw~~~-~~~~~~~~~~~~~-~~~~~~   76 (111)
                      .++++.+|++. .++....+.    .+...+..+.|+|||+.++.+.. +..|.+|++. +++..... .+.. .....+
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~-~~~~~~~g~~p  195 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG-SVDAPDPGDHP  195 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE-EEECSSTTCCE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee-eEecCCCCCCC
Confidence            58899999997 355443333    24567899999999998777653 6799999998 55432210 1110 001346


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ..++|+|++..++++.       ..++.|.+|++
T Consensus       196 ~~~~~spdg~~l~v~~-------~~~~~v~v~~~  222 (365)
T 1jof_A          196 RWVAMHPTGNYLYALM-------EAGNRICEYVI  222 (365)
T ss_dssp             EEEEECTTSSEEEEEE-------TTTTEEEEEEE
T ss_pred             CEeEECCCCCEEEEEE-------CCCCeEEEEEE
Confidence            6789999999887765       45678888864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.93  E-value=2.2e-08  Score=63.11  Aligned_cols=99  Identities=13%  Similarity=0.133  Sum_probs=69.7

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe----------CCCeEEEEecCCCceeeeecce--eeee
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS----------KDGYILVWTSSYPSKVKYSHDM--KTFS   72 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~--~~~~   72 (111)
                      .|++|.+||..+++.+..+..+...  .+.|+||++.+..+.          .++.+.+||..+.+......-.  ....
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            4789999999988888777765444  899999999888775          2567999999876655421000  0000


Q ss_pred             cCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          73 WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      -.....++++|++..++++.      ...++.|.+||++
T Consensus       107 g~~p~~i~~spdg~~l~v~n------~~~~~~v~v~d~~  139 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQN------ASPATSIGIVDVA  139 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEE------ESSSEEEEEEETT
T ss_pred             CCCcceEEECCCCCEEEEEC------CCCCCeEEEEECC
Confidence            12345789999999988865      1226789999974

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.93  E-value=1.4e-08  Score=61.04  Aligned_cols=93  Identities=12%  Similarity=0.019  Sum_probs=65.4

Q ss_pred             ccCeeeecCCCC-ceeeeeeecc-cccEEEEEEcCCCcEEEEEe--CCCeEEEEec--CCCceeeeecceeeeecCceee
Q psy8803           5 YEEYKRLDYHTP-IVETEVLTQH-THQVLHVSFSHNGRYFATCS--KDGYILVWTS--SYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         5 ~d~~i~iw~~~~-~~~~~~~~~~-~~~v~~i~~s~~~~~l~s~~--~d~~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      .++.|.+||+.. ++....+..+ ...+.++.|+|+++.|+.++  .++...+|.+  .......    +..  ......
T Consensus        60 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~----~~~--~~~~~~  133 (297)
T 2ojh_A           60 SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL----MTK--NLPSYW  133 (297)
T ss_dssp             ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE----CCS--SSSEEE
T ss_pred             cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE----eec--CCCccc
Confidence            478999999998 7766655555 46788999999999999988  3345555554  4433222    111  023456


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++|+|++..++.++       ..++.++||++
T Consensus       134 ~~~spdg~~l~~~~-------~~~~~~~l~~~  158 (297)
T 2ojh_A          134 HGWSPDGKSFTYCG-------IRDQVFDIYSM  158 (297)
T ss_dssp             EEECTTSSEEEEEE-------EETTEEEEEEE
T ss_pred             eEECCCCCEEEEEE-------CCCCceEEEEE
Confidence            78999999888766       67788999985

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.92  E-value=5.4e-08  Score=59.66  Aligned_cols=89  Identities=3%  Similarity=-0.068  Sum_probs=65.7

Q ss_pred             eeeecCCCCceee-eeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCC
Q psy8803           8 YKRLDYHTPIVET-EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDT   86 (111)
Q Consensus         8 ~i~iw~~~~~~~~-~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   86 (111)
                      .+.+||..+++.. ..+..+...+..++|+|+++.++.+  ++.+.+||+.+.+....   +. .. ..+..++|+|++.
T Consensus       220 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~---~~-~~-~~~~~~~~s~dg~  292 (337)
T 1pby_B          220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR---VP-LP-HSYYSVNVSTDGS  292 (337)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE---EE-CS-SCCCEEEECTTSC
T ss_pred             ceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcce---ec-CC-CceeeEEECCCCC
Confidence            5789999887653 3344566778899999999988888  68999999988765442   11 11 2345789999998


Q ss_pred             EEEEeccccCCccccCceEEEeecC
Q psy8803          87 LLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .++++        +.++.|.+||++
T Consensus       293 ~l~~~--------~~~~~i~v~d~~  309 (337)
T 1pby_B          293 TVWLG--------GALGDLAAYDAE  309 (337)
T ss_dssp             EEEEE--------SBSSEEEEEETT
T ss_pred             EEEEE--------cCCCcEEEEECc
Confidence            87664        457889999974

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.89  E-value=1e-08  Score=67.86  Aligned_cols=91  Identities=8%  Similarity=-0.126  Sum_probs=62.3

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCC----CeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKD----GYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      .++.+.+||+.+++...... +..  ..+.|+|||+.|+.++.+    ..|++||+.++........     ......++
T Consensus       130 ~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~-----~~~~~~~~  201 (582)
T 3o4h_A          130 TEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSG-----EGSFSSAS  201 (582)
T ss_dssp             CSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCS-----SCEEEEEE
T ss_pred             CCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecC-----CCccccce
Confidence            34445599998776544333 333  788999999999987766    7899999887654331111     12345789


Q ss_pred             EccCCCEEEEeccccCCccccCc--eEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSG--EIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~--~i~iw~~~  111 (111)
                      |+|++..++ ++       ..++  .|.+||++
T Consensus       202 ~SpDG~~l~-~~-------~~~~~~~i~~~d~~  226 (582)
T 3o4h_A          202 ISPGMKVTA-GL-------ETAREARLVTVDPR  226 (582)
T ss_dssp             ECTTSCEEE-EE-------ECSSCEEEEEECTT
T ss_pred             ECCCCCEEE-Ec-------cCCCeeEEEEEcCC
Confidence            999999987 43       4455  79999863

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.85  E-value=1.4e-08  Score=71.39  Aligned_cols=86  Identities=12%  Similarity=-0.098  Sum_probs=65.2

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCC----------eEEEEecCCCceeeeecceeee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDG----------YILVWTSSYPSKVKYSHDMKTF   71 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~----------~i~iw~~~~~~~~~~~~~~~~~   71 (111)
                      ++..++.+++||+.+++....+.+|...+..++|+|||++|+.++.++          .+++||+.++.....    ...
T Consensus       395 ~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l----~~~  470 (1045)
T 1k32_A          395 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA----TTE  470 (1045)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC----SCS
T ss_pred             EECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe----eCC
Confidence            356788999999998887777778999999999999999998887644          899999987653321    111


Q ss_pred             ecCceeeEEEccCCCEEEEec
Q psy8803          72 SWKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~   92 (111)
                       ......++|+|++..++...
T Consensus       471 -~~~~~~~~~spdG~~l~~~s  490 (1045)
T 1k32_A          471 -NSHDYAPAFDADSKNLYYLS  490 (1045)
T ss_dssp             -SSBEEEEEECTTSCEEEEEE
T ss_pred             -CcccCCceEcCCCCEEEEEe
Confidence             12344678999999887654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.80  E-value=9.8e-09  Score=69.90  Aligned_cols=91  Identities=12%  Similarity=0.031  Sum_probs=67.1

Q ss_pred             cCeeeecCCCCceeeeeeeccccc-----EEEEEEcCCCcEEEEEeCC---------CeEEEEecCCCceeeeecceeee
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQ-----VLHVSFSHNGRYFATCSKD---------GYILVWTSSYPSKVKYSHDMKTF   71 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~-----v~~i~~s~~~~~l~s~~~d---------~~i~iw~~~~~~~~~~~~~~~~~   71 (111)
                      |++|++||+.+++....+.+|...     .....|||||+.|+.++.+         +.+.+||+.+++...    +...
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~  110 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERI  110 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCC
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccC
Confidence            899999999999877777776533     2347889999999988865         556799999876543    1111


Q ss_pred             ecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          72 SWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      . ......+|+|++..|+.+         .++.|.+||+
T Consensus       111 ~-~~~~~~~~SPdG~~la~~---------~~~~i~~~~~  139 (740)
T 4a5s_A          111 P-NNTQWVTWSPVGHKLAYV---------WNNDIYVKIE  139 (740)
T ss_dssp             C-TTEEEEEECSSTTCEEEE---------ETTEEEEESS
T ss_pred             C-CcceeeEECCCCCEEEEE---------ECCeEEEEEC
Confidence            1 345678899999988774         3677888875

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.78  E-value=7.7e-08  Score=65.15  Aligned_cols=85  Identities=11%  Similarity=-0.000  Sum_probs=60.7

Q ss_pred             CeeeecCCCCce--eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeeccee-ee-----------e
Q psy8803           7 EYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMK-TF-----------S   72 (111)
Q Consensus         7 ~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~-----------~   72 (111)
                      +.|.+||+..+.  ....+..|...+..++|+|||+.|+.++. +.|.+||+.++........-. .+           .
T Consensus       129 ~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~  207 (741)
T 2ecf_A          129 GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEE  207 (741)
T ss_dssp             TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHH
T ss_pred             CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeec
Confidence            789999998773  45567778889999999999999999884 599999998765443111000 00           0


Q ss_pred             cCceeeEEEccCCCEEEEec
Q psy8803          73 WKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~   92 (111)
                      ......++|+|++..|+++.
T Consensus       208 ~~~~~~~~~SpDg~~l~~~~  227 (741)
T 2ecf_A          208 MDRHTGYWWAPDDSAIAYAR  227 (741)
T ss_dssp             SCCCCSEEECTTSSCEEEEE
T ss_pred             cccccceEECCCCCEEEEEE
Confidence            01135789999999887765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.78  E-value=2.3e-08  Score=67.49  Aligned_cols=88  Identities=10%  Similarity=0.074  Sum_probs=59.5

Q ss_pred             ccCeeeecCCCCceeeeee---ecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeee----cce-ee-e-e--
Q psy8803           5 YEEYKRLDYHTPIVETEVL---TQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYS----HDM-KT-F-S--   72 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~---~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~-~~-~-~--   72 (111)
                      +++.+.+||+.+++. ..+   .+|...+..++|||||+.|+.++. +.|++|++.++......    ..+ .. + .  
T Consensus        89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v  166 (723)
T 1xfd_A           89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL  166 (723)
T ss_dssp             CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred             ceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECccccee
Confidence            458899999998765 233   345555889999999999999886 79999999876543311    111 00 0 0  


Q ss_pred             -----cCceeeEEEccCCCEEEEeccc
Q psy8803          73 -----WKYTQYSQFNESDTLLLVSGVH   94 (111)
Q Consensus        73 -----~~~~~~v~~~~~~~~~~~~~~~   94 (111)
                           ......++|+|++..|+.+..+
T Consensus       167 ~~ee~~~~~~~~~~SpDg~~la~~~~~  193 (723)
T 1xfd_A          167 YEEEILKTHIAHWWSPDGTRLAYAAIN  193 (723)
T ss_dssp             HHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             EEEEeccCcceEEECCCCCEEEEEEEC
Confidence                 0122578999999988776533

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.76  E-value=7.7e-08  Score=64.87  Aligned_cols=103  Identities=10%  Similarity=0.056  Sum_probs=67.2

Q ss_pred             cccCeeeecCCCC-----ceeeeeeeccccc--------------EEEEEEcCCCcEEEEEe------------------
Q psy8803           4 WYEEYKRLDYHTP-----IVETEVLTQHTHQ--------------VLHVSFSHNGRYFATCS------------------   46 (111)
Q Consensus         4 ~~d~~i~iw~~~~-----~~~~~~~~~~~~~--------------v~~i~~s~~~~~l~s~~------------------   46 (111)
                      ..|+.|.+|++.+     ++.......+...              +..+.|+|||+.|+.++                  
T Consensus       138 ~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~  217 (706)
T 2z3z_A          138 VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLE  217 (706)
T ss_dssp             EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSS
T ss_pred             EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCC
Confidence            3578999999987     7655444333332              47899999999999887                  


Q ss_pred             ---------------CCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          47 ---------------KDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        47 ---------------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                                     .+..+.+||+.++........  ...-..+..++|+|++..+++...+..   .....|.+||++
T Consensus       218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~---~~~~~v~~~d~~  292 (706)
T 2z3z_A          218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPDENILYVAEVNRA---QNECKVNAYDAE  292 (706)
T ss_dssp             CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC--SCTTCEEEEEEECTTSSEEEEEEECTT---SCEEEEEEEETT
T ss_pred             CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC--CCCceeEeeEEEECCCCEEEEEEeCCC---CCeeEEEEEECC
Confidence                           446799999987664431100  001124567899999998876541111   123578999863

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.75  E-value=3.2e-08  Score=61.02  Aligned_cols=95  Identities=9%  Similarity=-0.028  Sum_probs=63.4

Q ss_pred             ccccCeeeecCCCCceeeeeeecc------cccEEEEEEcCCCcEEEEEeCC------------CeEEEEecCCCceeee
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQH------THQVLHVSFSHNGRYFATCSKD------------GYILVWTSSYPSKVKY   64 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~------~~~v~~i~~s~~~~~l~s~~~d------------~~i~iw~~~~~~~~~~   64 (111)
                      +..++.|.+||+.+++.+..+...      ...+..+.|+|+++.++.++.+            +.+.+||+.++.....
T Consensus        61 ~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  140 (349)
T 1jmx_B           61 NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP  140 (349)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred             eCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce
Confidence            346789999999988877666532      2337789999999998888755            8999999986432210


Q ss_pred             ecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          65 SHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        65 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .. .... ...+..++|+|++. +++.+          +.|.+||+
T Consensus       141 ~~-~~~~-~~~~~~~~~s~dg~-l~~~~----------~~i~~~d~  173 (349)
T 1jmx_B          141 VR-TFPM-PRQVYLMRAADDGS-LYVAG----------PDIYKMDV  173 (349)
T ss_dssp             SE-EEEC-CSSCCCEEECTTSC-EEEES----------SSEEEECT
T ss_pred             ee-eccC-CCcccceeECCCCc-EEEcc----------CcEEEEeC
Confidence            00 0000 01345678999988 55532          22888886

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.74  E-value=1.1e-07  Score=64.08  Aligned_cols=98  Identities=6%  Similarity=-0.025  Sum_probs=65.1

Q ss_pred             ccCeeeecCCCCceeeeeee--cccccEEEEEEcCCCcEEEEEeCCC-----eEEEEecCCCceeeeecceeeeec-Cce
Q psy8803           5 YEEYKRLDYHTPIVETEVLT--QHTHQVLHVSFSHNGRYFATCSKDG-----YILVWTSSYPSKVKYSHDMKTFSW-KYT   76 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l~s~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~-~~~   76 (111)
                      .+..|.+||+.+++......  .|...+..++|+||++.|+.++.++     .+.+||+.++.............| ...
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            45789999999887544332  4677899999999999998887665     899999988732221000000011 123


Q ss_pred             eeEEEcc--CCCEEEEeccccCCccccCceEEEeec
Q psy8803          77 QYSQFNE--SDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        77 ~~v~~~~--~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ..++|+|  ++..+ .++       ..++.+++|++
T Consensus       313 ~~~~~sp~~dg~~l-~~~-------~~~g~~~l~~~  340 (706)
T 2z3z_A          313 HPLTFLPGSNNQFI-WQS-------RRDGWNHLYLY  340 (706)
T ss_dssp             SCCEECTTCSSEEE-EEE-------CTTSSCEEEEE
T ss_pred             CCceeecCCCCEEE-EEE-------ccCCccEEEEE
Confidence            5678999  77654 444       55677888864

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.71  E-value=6.8e-07  Score=59.70  Aligned_cols=95  Identities=15%  Similarity=0.067  Sum_probs=72.0

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecC--CCceeeeecceeeeecCceeeEE
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSS--YPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ...+++|.++|..+++.+..+.. ...+..+.|+||++++..++.++.+.+||+.  +.+...   .+...  .....++
T Consensus       173 ~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~---~i~~G--~~P~~ia  246 (567)
T 1qks_A          173 LRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA---EIKIG--SEARSIE  246 (567)
T ss_dssp             ETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE---EEECC--SEEEEEE
T ss_pred             eCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE---EEecC--CCCceeE
Confidence            34678999999999988877763 3356689999999999999999999999995  554443   22211  2346789


Q ss_pred             Ec----cCCCEEEEeccccCCccccCceEEEeec
Q psy8803          81 FN----ESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        81 ~~----~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      |+    |++.+++++.       -.++.|.|+|.
T Consensus       247 ~s~~~~pDGk~l~v~n-------~~~~~v~ViD~  273 (567)
T 1qks_A          247 TSKMEGWEDKYAIAGA-------YWPPQYVIMDG  273 (567)
T ss_dssp             ECCSTTCTTTEEEEEE-------EETTEEEEEET
T ss_pred             EccccCCCCCEEEEEE-------ccCCeEEEEEC
Confidence            99    6888888876       56778888884

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.69  E-value=8.1e-07  Score=55.77  Aligned_cols=104  Identities=13%  Similarity=0.055  Sum_probs=62.8

Q ss_pred             ccCeeeecCCC-Cceee--eeee--cccccEEEEEEcCCCcEEEEEeC-CCeEEEEecC--CCceeeeecceeeee--c-
Q psy8803           5 YEEYKRLDYHT-PIVET--EVLT--QHTHQVLHVSFSHNGRYFATCSK-DGYILVWTSS--YPSKVKYSHDMKTFS--W-   73 (111)
Q Consensus         5 ~d~~i~iw~~~-~~~~~--~~~~--~~~~~v~~i~~s~~~~~l~s~~~-d~~i~iw~~~--~~~~~~~~~~~~~~~--~-   73 (111)
                      .++.|.+|++. +++..  ..+.  .|...+..++|+|||+.++.++. ++.+.+|++.  ++........+..+.  + 
T Consensus       165 ~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  244 (365)
T 1jof_A          165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP  244 (365)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred             CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence            36789999998 56532  2333  23567899999999998877764 6799999875  343221000011110  0 


Q ss_pred             --C-------ceeeEE-EccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          74 --K-------YTQYSQ-FNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        74 --~-------~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                        .       ....++ |+|++..++++......  ...+.|.+|++
T Consensus       245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~--~~~~~i~v~~~  289 (365)
T 1jof_A          245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKF--ELQGYIAGFKL  289 (365)
T ss_dssp             CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST--TSCCEEEEEEE
T ss_pred             CcccccccccccccEEEECCCCCEEEEECCCCCC--CCCCeEEEEEE
Confidence              1       356789 99999988765511000  00127999986

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.66  E-value=1e-06  Score=53.33  Aligned_cols=94  Identities=6%  Similarity=0.030  Sum_probs=62.9

Q ss_pred             cccCeeeecCCCCceeeeeeecc--cccEEEEEEcCCCcEEEEEeCCC-eEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQH--THQVLHVSFSHNGRYFATCSKDG-YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~--~~~v~~i~~s~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ..++.|++||.. ++.+..+..+  ......++++++++++++...++ .|.+|+...........   ......+..++
T Consensus       182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~---~~~~~~~~~i~  257 (286)
T 1q7f_A          182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALES---KVKHAQCFDVA  257 (286)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEE---SSCCSCEEEEE
T ss_pred             CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcc---cCCCCcceeEE
Confidence            457889999975 5555555433  36788999999999999888775 99999965432221110   01112245788


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++|++..+++ .        .++.|++|++
T Consensus       258 ~~~~g~l~vs-~--------~~~~v~v~~~  278 (286)
T 1q7f_A          258 LMDDGSVVLA-S--------KDYRLYIYRY  278 (286)
T ss_dssp             EETTTEEEEE-E--------TTTEEEEEEC
T ss_pred             ECCCCcEEEE-C--------CCCeEEEEEc
Confidence            9998865444 3        4788999986

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.65  E-value=2e-07  Score=63.03  Aligned_cols=86  Identities=8%  Similarity=-0.036  Sum_probs=58.3

Q ss_pred             ccCeeeecCCCCceee--eeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeee--c---ceeeee-----
Q psy8803           5 YEEYKRLDYHTPIVET--EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYS--H---DMKTFS-----   72 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~--~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~---~~~~~~-----   72 (111)
                      .|+.+++||+.+++.+  ..+   ...+..++|||||+.|+.+. ++.|++|++.++......  .   .+....     
T Consensus        88 ~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~  163 (719)
T 1z68_A           88 YTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY  163 (719)
T ss_dssp             EEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred             cceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence            3789999999988763  222   24678899999999999886 679999999876543311  0   011000     


Q ss_pred             ----cCceeeEEEccCCCEEEEeccc
Q psy8803          73 ----WKYTQYSQFNESDTLLLVSGVH   94 (111)
Q Consensus        73 ----~~~~~~v~~~~~~~~~~~~~~~   94 (111)
                          +.....++|+|++..|+....+
T Consensus       164 ~ee~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          164 EEEMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             HHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             eeecccCcccEEECCCCCEEEEEEEC
Confidence                0111478999999998776533

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.63  E-value=5.6e-07  Score=57.55  Aligned_cols=86  Identities=9%  Similarity=-0.013  Sum_probs=63.0

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      .++.|++||+.+......+..|...+..+.+.+.  .++.+..||.+.+||+..........        .+++++|+|.
T Consensus       104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~~~--------~Vs~v~WSpk  173 (388)
T 1xip_A          104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ--------NVTSFDVTNS  173 (388)
T ss_dssp             ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE--------SEEEEEECSS
T ss_pred             cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccccC--------CceEEEEcCC
Confidence            6799999999876655566667778888877653  38888999999999999766554322        3456677778


Q ss_pred             CCEEEEeccccCCccccCceEEEeec
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      + .  +.|       ..++.+++|+.
T Consensus       174 G-~--~vg-------~~dg~i~~~~~  189 (388)
T 1xip_A          174 Q-L--AVL-------LKDRSFQSFAW  189 (388)
T ss_dssp             E-E--EEE-------ETTSCEEEEEE
T ss_pred             c-e--EEE-------EcCCcEEEEcC
Confidence            7 3  333       56888998863

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.56  E-value=2.8e-07  Score=62.87  Aligned_cols=84  Identities=10%  Similarity=-0.011  Sum_probs=58.6

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeee--c---ceee-ee--------
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYS--H---DMKT-FS--------   72 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~---~~~~-~~--------   72 (111)
                      +.+.+||+.+++.. .+..|.+.+...+|||||+.|+.+. ++.|++|+..++......  .   .+.. ..        
T Consensus        92 ~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~  169 (740)
T 4a5s_A           92 ASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (740)
T ss_dssp             EEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             eEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence            56679999988754 4667788899999999999998885 679999999876543311  0   0110 00        


Q ss_pred             cCceeeEEEccCCCEEEEec
Q psy8803          73 WKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~   92 (111)
                      +.....++|+|++..|+...
T Consensus       170 ~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          170 FSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             SSSSBCEEECTTSSEEEEEE
T ss_pred             cCCCcceEECCCCCEEEEEE
Confidence            11223578999999887764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.53  E-value=4.9e-07  Score=56.09  Aligned_cols=97  Identities=10%  Similarity=0.032  Sum_probs=67.5

Q ss_pred             cccCeeeecCCCCceeeeeee--cccccEEEEEEcCCCcEEEEE-------eCCCeEEEEecCCCceeeeecceeeeecC
Q psy8803           4 WYEEYKRLDYHTPIVETEVLT--QHTHQVLHVSFSHNGRYFATC-------SKDGYILVWTSSYPSKVKYSHDMKTFSWK   74 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l~s~-------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~   74 (111)
                      ..++.|++|+..+++.+..+.  .+...+..++|+| +..++..       ..+..+++|+..++......... .....
T Consensus       215 ~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~  292 (329)
T 3fvz_A          215 RENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-RKHFD  292 (329)
T ss_dssp             TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-SSCCS
T ss_pred             CCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-CCccC
Confidence            457789999998888777774  4566788999999 4444443       34458999999887665532111 11224


Q ss_pred             ceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .+..++++|++ .++++.       ..++.|++|++
T Consensus       293 ~p~~ia~~~dG-~lyvad-------~~~~~I~~~~~  320 (329)
T 3fvz_A          293 MPHDIVASEDG-TVYIGD-------AHTNTVWKFTL  320 (329)
T ss_dssp             SEEEEEECTTS-EEEEEE-------SSSCCEEEEEE
T ss_pred             CeeEEEECCCC-CEEEEE-------CCCCEEEEEeC
Confidence            56789999988 666766       67888999986

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.48  E-value=4.4e-06  Score=51.65  Aligned_cols=77  Identities=18%  Similarity=0.157  Sum_probs=52.5

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCC---C--eEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKD---G--YILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      +++.+.+||+..++.. .+    ..+..+.|+|||+.|+..+.+   +  .|.+|++..++....    .... . +..+
T Consensus        41 ~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l----~~~~-~-~~~~  109 (347)
T 2gop_A           41 YENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI----LEAK-N-IRSL  109 (347)
T ss_dssp             EEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE----EEES-E-EEEE
T ss_pred             ccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE----EcCC-C-ccce
Confidence            4678889998876543 33    467889999999988877643   3  377777776554331    1111 1 4567


Q ss_pred             EEccCCCEEEEec
Q psy8803          80 QFNESDTLLLVSG   92 (111)
Q Consensus        80 ~~~~~~~~~~~~~   92 (111)
                      +|+|++..++.+.
T Consensus       110 ~wspdg~~l~~~~  122 (347)
T 2gop_A          110 EWNEDSRKLLIVG  122 (347)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             eECCCCCEEEEEE
Confidence            8999999887765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.48  E-value=9.2e-06  Score=50.36  Aligned_cols=99  Identities=14%  Similarity=0.023  Sum_probs=66.0

Q ss_pred             cccCeeeecCCCCce-eeeee---------ecccccEEEEEEcC-CCcEEEEEe-CCCeEEEEecCCCceeeeeccee--
Q psy8803           4 WYEEYKRLDYHTPIV-ETEVL---------TQHTHQVLHVSFSH-NGRYFATCS-KDGYILVWTSSYPSKVKYSHDMK--   69 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~-~~~~~---------~~~~~~v~~i~~s~-~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~--   69 (111)
                      ..++.|++|+..... .+..+         .++......++++| +++++++.+ .++.|.+|+... ..........  
T Consensus       109 ~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~~~~~g~~  187 (329)
T 3fvz_A          109 VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQWGEESSG  187 (329)
T ss_dssp             TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEEECEECCS
T ss_pred             CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEEeccCCCC
Confidence            456789999976432 44444         23445688999999 799999886 689999999543 3322110000  


Q ss_pred             ----eeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          70 ----TFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        70 ----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                          ...+.....++++|+...++++.       ..++.|++||.
T Consensus       188 ~~~~~~~~~~p~gia~d~~~g~l~v~d-------~~~~~I~~~~~  225 (329)
T 3fvz_A          188 SSPRPGQFSVPHSLALVPHLDQLCVAD-------RENGRIQCFKT  225 (329)
T ss_dssp             SSCCTTEESCEEEEEEETTTTEEEEEE-------TTTTEEEEEET
T ss_pred             CCCCCcccCCCcEEEEECCCCEEEEEE-------CCCCEEEEEEC
Confidence                01123467899999866777776       67788999986

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.43  E-value=2.6e-06  Score=53.72  Aligned_cols=74  Identities=11%  Similarity=0.095  Sum_probs=57.0

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC--ceeeeecceeeeecCceeeEEEcc
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP--SKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ...|.+||..+++.+..+..+.  ...+.|+|||+.|++++. +.+.+||..++  +.......+   . .....++++|
T Consensus       285 ~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~---G-~~P~~~~~~p  357 (361)
T 2oiz_A          285 AAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA---A-EASLQVQFHP  357 (361)
T ss_dssp             CSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS---C-SSEEEEEECC
T ss_pred             CceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC---C-CCcEEEEecC
Confidence            3589999999999999988776  899999999999888887 89999999988  655431111   1 3345677777


Q ss_pred             CCC
Q psy8803          84 SDT   86 (111)
Q Consensus        84 ~~~   86 (111)
                      ++.
T Consensus       358 ~G~  360 (361)
T 2oiz_A          358 VGG  360 (361)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.42  E-value=3.2e-06  Score=52.96  Aligned_cols=90  Identities=11%  Similarity=0.069  Sum_probs=61.1

Q ss_pred             eecCCCCceeeeeeecccccEEE-----EEEcCCCcEEEEEeC-CC--eEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803          10 RLDYHTPIVETEVLTQHTHQVLH-----VSFSHNGRYFATCSK-DG--YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus        10 ~iw~~~~~~~~~~~~~~~~~v~~-----i~~s~~~~~l~s~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      ...|..++..+..+..|......     .+|+|||+.|+..+. ++  .|.+||+.++........    ........+|
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~----~~~~~~~~~~   88 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG----RGDNTFGGFL   88 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS----SCBCSSSCEE
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC----CCCCccceEE
Confidence            34566778888888877766665     789999998888876 66  478888887665442111    0011224578


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|++..|+...        .++.|.+||++
T Consensus        89 spdg~~l~~~~--------~~~~l~~~d~~  110 (388)
T 3pe7_A           89 SPDDDALFYVK--------DGRNLMRVDLA  110 (388)
T ss_dssp             CTTSSEEEEEE--------TTTEEEEEETT
T ss_pred             cCCCCEEEEEe--------CCCeEEEEECC
Confidence            99999887654        45678888863

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.39  E-value=6.4e-06  Score=55.23  Aligned_cols=93  Identities=8%  Similarity=0.078  Sum_probs=59.7

Q ss_pred             CeeeecCCC-Cc---eeeeeeecccccEEEEEEcCCCcEEEEEeCCC--eEEEEecCCCceee---eecceeeeecCc-e
Q psy8803           7 EYKRLDYHT-PI---VETEVLTQHTHQVLHVSFSHNGRYFATCSKDG--YILVWTSSYPSKVK---YSHDMKTFSWKY-T   76 (111)
Q Consensus         7 ~~i~iw~~~-~~---~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~--~i~iw~~~~~~~~~---~~~~~~~~~~~~-~   76 (111)
                      ..|.+||+. ++   +......+|...+..+.|+|||++++++..++  .|.+|+..++....   +...+....|.+ .
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~  296 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGM  296 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTC
T ss_pred             cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccC
Confidence            479999998 56   43333345578899999999999888888888  56666665544332   111222223333 4


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEe
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVF  108 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw  108 (111)
                      ..++|+|++..++. +       .. +.+++|
T Consensus       297 ~~~~~~~~~~~~~~-~-------~~-~~~~l~  319 (662)
T 3azo_A          297 RWFAPLANGLIAVV-H-------GK-GAAVLG  319 (662)
T ss_dssp             CSEEECTTSCEEEE-E-------BS-SSCEEE
T ss_pred             ceEeEeCCCEEEEE-E-------Ec-CccEEE
Confidence            56888888776554 3       33 667777

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.39  E-value=1e-05  Score=49.30  Aligned_cols=84  Identities=6%  Similarity=-0.191  Sum_probs=58.2

Q ss_pred             cccccCeeeecCCCCceeeeeeeccc-ccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHT-HQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      +.+.|+.|.+||..+++.+..+..+. ..+..+.++|+|++|++  .+..+..||. +++..-....   .....+..++
T Consensus        10 ~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~---~~~~~~~~~~   83 (276)
T 3no2_A           10 GGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAA---PAGCEMQTAR   83 (276)
T ss_dssp             ECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEEC---CTTCEEEEEE
T ss_pred             eeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcC---CCCccccccE
Confidence            46789999999998999998888765 47888999999999983  4678999998 5543321100   0001234556


Q ss_pred             EccCCCEEEEe
Q psy8803          81 FNESDTLLLVS   91 (111)
Q Consensus        81 ~~~~~~~~~~~   91 (111)
                      +.+++..+++.
T Consensus        84 ~~~dG~~lv~~   94 (276)
T 3no2_A           84 ILPDGNALVAW   94 (276)
T ss_dssp             ECTTSCEEEEE
T ss_pred             ECCCCCEEEEe
Confidence            67777766553

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.36  E-value=1.7e-05  Score=47.38  Aligned_cols=96  Identities=4%  Similarity=-0.037  Sum_probs=65.3

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..++.|.+|+............+...+..++++++|.++++...++.|.+|+.........  ..  .....+..+++.+
T Consensus       168 ~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~--~~--~~~~~p~~i~~~~  243 (270)
T 1rwi_B          168 TDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL--PF--TGLNTPLAVAVDS  243 (270)
T ss_dssp             GGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC--CC--CSCSCEEEEEECT
T ss_pred             CCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee--cc--CCCCCceeEEECC
Confidence            3457888888876554333233336788999999999888888888999999876433221  00  1113456788998


Q ss_pred             CCCEEEEeccccCCccccCceEEEeecC
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++. ++++.       ..++.|+++++.
T Consensus       244 ~g~-l~v~~-------~~~~~v~~~~~~  263 (270)
T 1rwi_B          244 DRT-VYVAD-------RGNDRVVKLTSL  263 (270)
T ss_dssp             TCC-EEEEE-------GGGTEEEEECCC
T ss_pred             CCC-EEEEE-------CCCCEEEEEcCC
Confidence            886 55555       678889998863

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.36  E-value=2.4e-06  Score=57.27  Aligned_cols=102  Identities=5%  Similarity=-0.077  Sum_probs=61.9

Q ss_pred             cCeeeecCCC-Cc-eeeeeeec-----ccccEEEEEEcCCCcEEEEEeCC----------CeEEEEecCC------Ccee
Q psy8803           6 EEYKRLDYHT-PI-VETEVLTQ-----HTHQVLHVSFSHNGRYFATCSKD----------GYILVWTSSY------PSKV   62 (111)
Q Consensus         6 d~~i~iw~~~-~~-~~~~~~~~-----~~~~v~~i~~s~~~~~l~s~~~d----------~~i~iw~~~~------~~~~   62 (111)
                      +..|.++++. ++ .....+..     |...+..++|+|||+.|+.++.+          ..|.+|++..      +...
T Consensus       101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  180 (662)
T 3azo_A          101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR  180 (662)
T ss_dssp             TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred             CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee
Confidence            3445555554 01 33445555     66788999999999999988876          5799999987      4332


Q ss_pred             eeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          63 KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        63 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ....   .. ......++|+|++..|+.+..+.....-....|.+||+.
T Consensus       181 ~l~~---~~-~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~  225 (662)
T 3azo_A          181 ELSD---DA-HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT  225 (662)
T ss_dssp             ESSC---SC-SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred             EEEe---cC-CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC
Confidence            2110   10 123446789999998876552221100013578888863

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.36  E-value=2.4e-05  Score=47.19  Aligned_cols=93  Identities=10%  Similarity=0.092  Sum_probs=63.3

Q ss_pred             cCeeeecCCCCceeeeeee-cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           6 EEYKRLDYHTPIVETEVLT-QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      ++.|.+|| ..++.+..+. .+...+..++++++++++++...++.|.+|+............   .....+..++++|+
T Consensus        99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~---~~~~~p~~i~~~~~  174 (286)
T 1q7f_A           99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS---KHLEFPNGVVVNDK  174 (286)
T ss_dssp             GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT---TTCSSEEEEEECSS
T ss_pred             CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCC---CccCCcEEEEECCC
Confidence            78899999 4466665554 3445789999999999998888889999999754322211100   01134567889988


Q ss_pred             CCEEEEeccccCCccccCceEEEeec
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +. ++++.       ..++.|.+||.
T Consensus       175 g~-l~v~~-------~~~~~i~~~~~  192 (286)
T 1q7f_A          175 QE-IFISD-------NRAHCVKVFNY  192 (286)
T ss_dssp             SE-EEEEE-------GGGTEEEEEET
T ss_pred             CC-EEEEE-------CCCCEEEEEcC
Confidence            76 45554       55778999875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.34  E-value=1.3e-05  Score=48.75  Aligned_cols=86  Identities=5%  Similarity=-0.112  Sum_probs=60.4

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      +..++.|..|+...+  ...+..+...+..++++++++++++...++.|.+||..++................++.+++.
T Consensus        46 ~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d  123 (296)
T 3e5z_A           46 DVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA  123 (296)
T ss_dssp             EGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEEC
T ss_pred             eCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC
Confidence            456788999998876  555666778899999999999988887778999999976654332111111112345678899


Q ss_pred             cCCCEEEE
Q psy8803          83 ESDTLLLV   90 (111)
Q Consensus        83 ~~~~~~~~   90 (111)
                      |++..+++
T Consensus       124 ~~G~l~vt  131 (296)
T 3e5z_A          124 PDGSLWFS  131 (296)
T ss_dssp             TTSCEEEE
T ss_pred             CCCCEEEE
Confidence            98876543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.33  E-value=6.2e-05  Score=46.32  Aligned_cols=86  Identities=13%  Similarity=0.089  Sum_probs=59.0

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCC----CeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKD----GYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      ..++.|.+||...++.......+...+.+++++++++++++...+    +.|.+||..............  ....++.+
T Consensus        63 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~i  140 (333)
T 2dg1_A           63 VFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS--TAYCIDDM  140 (333)
T ss_dssp             TTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS--SCCCEEEE
T ss_pred             CCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc--cCCcccce
Confidence            457889999988776554443466789999999999988887766    689999988765432111010  11345678


Q ss_pred             EEccCCCEEEEe
Q psy8803          80 QFNESDTLLLVS   91 (111)
Q Consensus        80 ~~~~~~~~~~~~   91 (111)
                      +++|++..+++.
T Consensus       141 ~~d~~g~l~v~~  152 (333)
T 2dg1_A          141 VFDSKGGFYFTD  152 (333)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EECCCCCEEEEe
Confidence            899988766543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.32  E-value=2.7e-05  Score=47.94  Aligned_cols=96  Identities=11%  Similarity=0.036  Sum_probs=62.8

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      ..++.++.|   .++....+..+...+..++|++++++++++..++.|.+||..+.........    .-..+..++++|
T Consensus        24 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~   96 (333)
T 2dg1_A           24 ISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS----HKANPAAIKIHK   96 (333)
T ss_dssp             CCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----SSSSEEEEEECT
T ss_pred             eecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC----CCCCcceEEECC
Confidence            346667777   3455566666777789999999999888888889999999987654432100    113456788898


Q ss_pred             CCCEEEEeccccCCccccCceEEEeec
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++..+++...+.    ...+.|.+||.
T Consensus        97 dg~l~v~~~~~~----~~~~~i~~~d~  119 (333)
T 2dg1_A           97 DGRLFVCYLGDF----KSTGGIFAATE  119 (333)
T ss_dssp             TSCEEEEECTTS----SSCCEEEEECT
T ss_pred             CCcEEEEeCCCC----CCCceEEEEeC
Confidence            887655432000    01146777774

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.28  E-value=3.2e-05  Score=47.09  Aligned_cols=95  Identities=7%  Similarity=0.017  Sum_probs=62.5

Q ss_pred             ccCeeeecCCC-Cce-----eeeeeeccc-ccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCcee
Q psy8803           5 YEEYKRLDYHT-PIV-----ETEVLTQHT-HQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         5 ~d~~i~iw~~~-~~~-----~~~~~~~~~-~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   77 (111)
                      .++.|.+|+.. .++     ....+.++. .....++++++|+++++...++.|.+||..++.....   +. .....+.
T Consensus       196 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~---~~-~~~~~~~  271 (314)
T 1pjx_A          196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMR---IR-CPFEKPS  271 (314)
T ss_dssp             TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEE---EE-CSSSCEE
T ss_pred             CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEE---Ee-CCCCCce
Confidence            35678888765 332     222333333 5678899999999999887788999999875443321   11 1113456


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .++|+|++..++++.       ..++.|..+++
T Consensus       272 ~i~~~~dg~~l~v~~-------~~~~~l~~~~~  297 (314)
T 1pjx_A          272 NLHFKPQTKTIFVTE-------HENNAVWKFEW  297 (314)
T ss_dssp             EEEECTTSSEEEEEE-------TTTTEEEEEEC
T ss_pred             eEEECCCCCEEEEEe-------CCCCeEEEEeC
Confidence            788998888676665       45567888875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.27  E-value=3.6e-06  Score=53.84  Aligned_cols=53  Identities=8%  Similarity=-0.118  Sum_probs=43.6

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCc
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPS   60 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~   60 (111)
                      +...||.+.+||+..+....    +...|.+++|+|+|  ++.+..|+++++|+.....
T Consensus       141 v~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~  193 (388)
T 1xip_A          141 ILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGE  193 (388)
T ss_dssp             EEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTE
T ss_pred             EEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcc
Confidence            34689999999999776543    45689999999999  6778889999999887655

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.26  E-value=2.5e-05  Score=48.95  Aligned_cols=55  Identities=7%  Similarity=-0.089  Sum_probs=43.8

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV   62 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~   62 (111)
                      .+.+||...++......++...+....|+||++.|+.++.++.+.+||+.+++..
T Consensus        61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~  115 (388)
T 3pe7_A           61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN  115 (388)
T ss_dssp             EEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             eEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence            4777888888766655666656556789999999999998899999999886544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.21  E-value=2.2e-05  Score=53.34  Aligned_cols=96  Identities=7%  Similarity=-0.024  Sum_probs=61.6

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCe----------------EEEEecCCCce---eeeecce
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGY----------------ILVWTSSYPSK---VKYSHDM   68 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~----------------i~iw~~~~~~~---~~~~~~~   68 (111)
                      .|++||+.+++.+.... ....+..++|+||++.|+.++.+..                |++|++.+...   ......-
T Consensus       152 ~i~v~d~~tg~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~  230 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD  230 (710)
T ss_dssp             EEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             EEEEEECCCCCCCcccc-cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence            89999999887655322 2223677999999999888877655                99999976542   1111000


Q ss_pred             eeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          69 KTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                         .-.....+.|+|++..++.......   ..+..|.+||+
T Consensus       231 ---~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~~l~~~d~  266 (710)
T 2xdw_A          231 ---EPKWMGGAELSDDGRYVLLSIREGC---DPVNRLWYCDL  266 (710)
T ss_dssp             ---CTTCEEEEEECTTSCEEEEEEECSS---SSCCEEEEEEG
T ss_pred             ---CCeEEEEEEEcCCCCEEEEEEEccC---CCccEEEEEEC
Confidence               0012346788999998877652111   11567888886

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.20  E-value=4.9e-05  Score=47.18  Aligned_cols=98  Identities=10%  Similarity=-0.060  Sum_probs=65.8

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceee--eecCceeeEE
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKT--FSWKYTQYSQ   80 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~v~   80 (111)
                      +..++.|.++|..+++.+..+. .......++++++++++++...++.+.++|..+.+...... +..  ........++
T Consensus        60 ~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~  137 (328)
T 3dsm_A           60 VNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE-CPDMDMESGSTEQMV  137 (328)
T ss_dssp             EGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEE
T ss_pred             EcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE-cCCccccCCCcceEE
Confidence            3457899999999998888775 34677899999999777777678999999998876543210 000  0001233566


Q ss_pred             EccCCCEEEEeccccCCccc-cCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQS-TSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~-~~~~i~iw~~~  111 (111)
                      +  ++..++++.       . .++.|.++|++
T Consensus       138 ~--~~~~lyv~~-------~~~~~~v~viD~~  160 (328)
T 3dsm_A          138 Q--YGKYVYVNC-------WSYQNRILKIDTE  160 (328)
T ss_dssp             E--ETTEEEEEE-------CTTCCEEEEEETT
T ss_pred             E--ECCEEEEEc-------CCCCCEEEEEECC
Confidence            6  345555654       2 37789998863

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.14  E-value=4.6e-05  Score=48.80  Aligned_cols=98  Identities=12%  Similarity=0.096  Sum_probs=66.9

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe----------CCCeEEEEecCCCceeeeec--c-eeeee
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS----------KDGYILVWTSSYPSKVKYSH--D-MKTFS   72 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~--~-~~~~~   72 (111)
                      ++.|.+.|..+++.+..+..-...  .+.++||++.+..+.          .+..+.+||..+.+......  . -+...
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~  135 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV  135 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence            678999999999888887633333  499999998766554          35689999999877655210  0 00000


Q ss_pred             cCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          73 WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ......++|+|++.+++++.      ...++.|.++|++
T Consensus       136 g~~P~~~a~spDGk~lyVan------~~~~~~VsVID~~  168 (386)
T 3sjl_D          136 GTYPWMTSLTPDGKTLLFYQ------FSPAPAVGVVDLE  168 (386)
T ss_dssp             SCCGGGEEECTTSSEEEEEE------CSSSCEEEEEETT
T ss_pred             CCCCceEEEcCCCCEEEEEE------cCCCCeEEEEECC
Confidence            12345689999999988865      1236789999864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.13  E-value=4.5e-05  Score=47.37  Aligned_cols=92  Identities=11%  Similarity=0.000  Sum_probs=64.8

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCC----------CeEEEEecCCCceeeeecceeeeecC
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKD----------GYILVWTSSYPSKVKYSHDMKTFSWK   74 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d----------~~i~iw~~~~~~~~~~~~~~~~~~~~   74 (111)
                      .++.|.++|..+++.+..+.. ......+.++|+|++++++..+          +.+.++|..+.+..... .+..  -.
T Consensus       150 ~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~-~~~~--g~  225 (328)
T 3dsm_A          150 YQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF-KFKL--GD  225 (328)
T ss_dssp             TCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE-ECCT--TC
T ss_pred             CCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE-ecCC--CC
Confidence            478999999998887776653 2345678899999988887654          78999999877654321 1110  12


Q ss_pred             ceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ....++++|++..++++.       .   .|.++|+
T Consensus       226 ~p~~la~~~d~~~lyv~~-------~---~v~~~d~  251 (328)
T 3dsm_A          226 WPSEVQLNGTRDTLYWIN-------N---DIWRMPV  251 (328)
T ss_dssp             CCEEEEECTTSCEEEEES-------S---SEEEEET
T ss_pred             CceeEEEecCCCEEEEEc-------c---EEEEEEC
Confidence            456789999888887754       2   6777775

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.03  E-value=0.00022  Score=45.32  Aligned_cols=93  Identities=11%  Similarity=-0.026  Sum_probs=62.6

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe----------CCCeEEEEecCCCceeeeecc---eeeeecC
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS----------KDGYILVWTSSYPSKVKYSHD---MKTFSWK   74 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~---~~~~~~~   74 (111)
                      +|.++|..+++.+..+..-..  ..+.++||++.+..+.          .+..+.++|..+.+......-   .+.....
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~--p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCC--CCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            889999998888777753322  3999999998877775          356899999987655442100   0000001


Q ss_pred             ceeeEEEccCCCEEEEeccccCCcccc-CceEEEee
Q psy8803          75 YTQYSQFNESDTLLLVSGVHFGTPQST-SGEIAVFS  109 (111)
Q Consensus        75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~i~iw~  109 (111)
                      ....++++|++..++++.       .. ++.|.++|
T Consensus       126 ~p~~~~~spDG~~l~v~n-------~~~~~~v~viD  154 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQ-------FAAGPAVGLVV  154 (373)
T ss_pred             CccceEECCCCCEEEEEe-------cCCCCeEEEEE
Confidence            234688999999988865       22 46688877

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.97  E-value=0.0002  Score=43.49  Aligned_cols=89  Identities=7%  Similarity=-0.042  Sum_probs=54.0

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecC-CCce-eeeecceeeeecCceeeEEEccCC
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSS-YPSK-VKYSHDMKTFSWKYTQYSQFNESD   85 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~-~~~~-~~~~~~~~~~~~~~~~~v~~~~~~   85 (111)
                      .|..++.. ++ +..+..+......++|+|+++.+++...++.|.+|++. .+.. ... ... ......+..+++.+++
T Consensus       154 ~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~-~~~-~~~~~~p~~i~~d~~G  229 (296)
T 3e5z_A          154 WVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQG-VHF-TVEPGKTDGLRVDAGG  229 (296)
T ss_dssp             EEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEE-EEE-CCSSSCCCSEEEBTTS
T ss_pred             EEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCC-eEe-eCCCCCCCeEEECCCC
Confidence            34444433 33 33344556677899999999988777778899999986 3333 110 001 1112334578888888


Q ss_pred             CEEEEeccccCCccccCceEEEeec
Q psy8803          86 TLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ...++         . ++.|.+||.
T Consensus       230 ~l~v~---------~-~~~v~~~~~  244 (296)
T 3e5z_A          230 LIWAS---------A-GDGVHVLTP  244 (296)
T ss_dssp             CEEEE---------E-TTEEEEECT
T ss_pred             CEEEE---------c-CCeEEEECC
Confidence            75544         2 455777764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.96  E-value=0.00014  Score=45.50  Aligned_cols=96  Identities=10%  Similarity=-0.001  Sum_probs=55.6

Q ss_pred             CeeeecCCCCceeeeeeecc--cccEEEEEEcCCCcEEEEEeCC-----CeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           7 EYKRLDYHTPIVETEVLTQH--THQVLHVSFSHNGRYFATCSKD-----GYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~--~~~v~~i~~s~~~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      ..|.+|++..++.. .+..+  ...+..+.|+||++.|+..+.+     +.|.+||+.++.....    ...  .... .
T Consensus       216 ~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l----~~~--~~~~-~  287 (396)
T 3c5m_A          216 ARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV----MVM--PPCS-H  287 (396)
T ss_dssp             CCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE----EEC--CSEE-E
T ss_pred             ceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe----eeC--CCCC-C
Confidence            45777777644432 33323  2357889999999977666433     4499999987654321    110  1112 6


Q ss_pred             EEcc-CCCEEEEeccccC--------CccccCceEEEeec
Q psy8803          80 QFNE-SDTLLLVSGVHFG--------TPQSTSGEIAVFSL  110 (111)
Q Consensus        80 ~~~~-~~~~~~~~~~~~~--------~~~~~~~~i~iw~~  110 (111)
                      +|+| ++..++..+.+..        .....+..|.+||+
T Consensus       288 ~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          288 LMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT  327 (396)
T ss_dssp             EEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred             CccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence            7888 8887665432100        00023577999986

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.94  E-value=4.6e-05  Score=51.74  Aligned_cols=84  Identities=10%  Similarity=-0.173  Sum_probs=54.2

Q ss_pred             cccCeeeecCCCCceeeeeeecccccE--EEEEEcCCCcEEEEEeCCCe-------------EEEEecCCCce---eeee
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQV--LHVSFSHNGRYFATCSKDGY-------------ILVWTSSYPSK---VKYS   65 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v--~~i~~s~~~~~l~s~~~d~~-------------i~iw~~~~~~~---~~~~   65 (111)
                      +.+.+|++||+.+++.+.  ..+...+  ..++|+|||+.|+.++.+..             |++|++.+...   ....
T Consensus       144 ~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~  221 (695)
T 2bkl_A          144 ADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE  221 (695)
T ss_dssp             CSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC
T ss_pred             CceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe
Confidence            345789999999887641  1121222  67899999999999887665             99999987542   1111


Q ss_pred             cceeeeecCceeeEEEccCCCEEEEec
Q psy8803          66 HDMKTFSWKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        66 ~~~~~~~~~~~~~v~~~~~~~~~~~~~   92 (111)
                      ..-  . -.....+.|+|++..++.+.
T Consensus       222 ~~~--~-~~~~~~~~~SpDG~~l~~~~  245 (695)
T 2bkl_A          222 RTG--D-PTTFLQSDLSRDGKYLFVYI  245 (695)
T ss_dssp             CCC--C-TTCEEEEEECTTSCCEEEEE
T ss_pred             cCC--C-CEEEEEEEECCCCCEEEEEE
Confidence            000  0 01234678899998876654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.94  E-value=7.3e-05  Score=47.56  Aligned_cols=91  Identities=13%  Similarity=-0.046  Sum_probs=64.2

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe----------CCCeEEEEecCCCceeeeecceeee------
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS----------KDGYILVWTSSYPSKVKYSHDMKTF------   71 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~------   71 (111)
                      ++.+.|..+++.+.++..-...  .+.++||++.+..+.          .++.+.+||+.+.+....   +...      
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~---I~v~~~~~~~  121 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFS  121 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE---EECCCccccc
Confidence            7889999999988888643344  799999988766664          367899999999876652   2110      


Q ss_pred             ecCceeeEEEccCCCEEEEeccccCCcccc-CceEEE--eec
Q psy8803          72 SWKYTQYSQFNESDTLLLVSGVHFGTPQST-SGEIAV--FSL  110 (111)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~i~i--w~~  110 (111)
                      .......++++|++.+++++.       .. .+.+.+  +|+
T Consensus       122 ~g~~P~~ia~SpDGk~lyVan-------~~~~~~v~V~~iD~  156 (368)
T 1mda_H          122 VGPRVHIIGNCASSACLLFFL-------FGSSAAAGLSVPGA  156 (368)
T ss_dssp             BSCCTTSEEECTTSSCEEEEE-------CSSSCEEEEEETTT
T ss_pred             cCCCcceEEEcCCCCEEEEEc-------cCCCCeEEEEEEch
Confidence            002345789999999888764       22 355776  765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.93  E-value=0.00026  Score=43.70  Aligned_cols=75  Identities=3%  Similarity=0.094  Sum_probs=48.3

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCC---------------------------CeEEEEecCCCc
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKD---------------------------GYILVWTSSYPS   60 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---------------------------~~i~iw~~~~~~   60 (111)
                      .|.+|++..++...... +.. +..+.|+||++.|+.++.+                           ..|.+|++.++.
T Consensus        86 ~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           86 EIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             EEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             eEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence            47777887776544333 334 8999999999988877632                           468889988766


Q ss_pred             eeeeecceeeeecCceeeEEEccCCCEEEEe
Q psy8803          61 KVKYSHDMKTFSWKYTQYSQFNESDTLLLVS   91 (111)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   91 (111)
                      ....   +.. .  .+..++|+|++ .++++
T Consensus       164 ~~~~---l~~-~--~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          164 VIEE---FEK-P--RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             EEEE---EEE-E--TTCEEEEETTE-EEEEE
T ss_pred             EEee---ecC-C--CcccccCCCCe-EEEEE
Confidence            5221   111 1  34467889888 44443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.93  E-value=0.00033  Score=41.71  Aligned_cols=92  Identities=7%  Similarity=0.031  Sum_probs=59.0

Q ss_pred             cCeeeecCCCCceeeeeee-cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           6 EEYKRLDYHTPIVETEVLT-QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      ++.|..||....... .+. .....+..++++++++++++...++.|.+|+..........    .........+++.++
T Consensus        86 ~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~----~~~~~~p~~i~~~~~  160 (270)
T 1rwi_B           86 NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP----FTGLNDPDGVAVDNS  160 (270)
T ss_dssp             TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC----CCSCCSCCCEEECTT
T ss_pred             CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec----cccCCCceeEEEeCC
Confidence            678888887754332 222 23357889999999998888777889999976544322210    011134567888888


Q ss_pred             CCEEEEeccccCCccccCceEEEeec
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +.. +++.       ..++.|.+||.
T Consensus       161 g~l-~v~~-------~~~~~i~~~~~  178 (270)
T 1rwi_B          161 GNV-YVTD-------TDNNRVVKLEA  178 (270)
T ss_dssp             CCE-EEEE-------GGGTEEEEECT
T ss_pred             CCE-EEEE-------CCCCEEEEEec
Confidence            874 4443       34567888875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.89  E-value=0.00016  Score=46.89  Aligned_cols=97  Identities=13%  Similarity=0.105  Sum_probs=66.3

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe----------CCCeEEEEecCCCceeeeec---ceeeeec
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS----------KDGYILVWTSSYPSKVKYSH---DMKTFSW   73 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~---~~~~~~~   73 (111)
                      +.|.+.|..+.+.+..+.--...  .+.++||++.+..+.          .++.+.++|..+.+......   .-+....
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            78999999999988888633334  899999988766654          35689999999877654210   0000001


Q ss_pred             CceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          74 KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .....++|+|++.+++++.      ...++.|.+.|++
T Consensus       177 ~~P~~~~~spDGk~lyV~n------~~~~~~VsVID~~  208 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQ------FSPAPAVGVVDLE  208 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEE------CSSSCEEEEEETT
T ss_pred             CCcceEEEcCCCCEEEEEe------cCCCCeEEEEECC
Confidence            2345689999999988865      1125678888863

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.86  E-value=0.00033  Score=43.75  Aligned_cols=83  Identities=13%  Similarity=0.142  Sum_probs=48.7

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcC-CCcEEEEEe----------------CCCeEEEEecCCCceeeeeccee
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSH-NGRYFATCS----------------KDGYILVWTSSYPSKVKYSHDMK   69 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~----------------~d~~i~iw~~~~~~~~~~~~~~~   69 (111)
                      +.|.+||+.+++...... ... .. ..|+| |+++++.++                .+..|.+||+..+..........
T Consensus       264 ~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~  340 (396)
T 3c5m_A          264 RVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHST  340 (396)
T ss_dssp             EEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCC
T ss_pred             ceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCC
Confidence            459999998775432221 111 22 88999 999888754                24689999987754322100000


Q ss_pred             eee------cCceeeEEEccCCCEEEEec
Q psy8803          70 TFS------WKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        70 ~~~------~~~~~~v~~~~~~~~~~~~~   92 (111)
                      ...      .......+|+|++..++.+.
T Consensus       341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s  369 (396)
T 3c5m_A          341 SWDVLDGDRQITHPHPSFTPNDDGVLFTS  369 (396)
T ss_dssp             CCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             ccccccccccCCCCCceEccCCCeEEEEe
Confidence            000      00133568899998887765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.85  E-value=0.0013  Score=44.19  Aligned_cols=59  Identities=3%  Similarity=-0.131  Sum_probs=43.4

Q ss_pred             ccccCeeeecCCC--CceeeeeeecccccEEEEEEc----CCCcEEEEEe-CCCeEEEEecCCCcee
Q psy8803           3 SWYEEYKRLDYHT--PIVETEVLTQHTHQVLHVSFS----HNGRYFATCS-KDGYILVWTSSYPSKV   62 (111)
Q Consensus         3 ~~~d~~i~iw~~~--~~~~~~~~~~~~~~v~~i~~s----~~~~~l~s~~-~d~~i~iw~~~~~~~~   62 (111)
                      ++.|+.|.+||+.  +.+.+..+.. ......+.|+    |||++++.+. .++.+.++|..+.+..
T Consensus       214 ~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~  279 (567)
T 1qks_A          214 IGRDGKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK  279 (567)
T ss_dssp             EETTSEEEEEETTSSSCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred             EcCCCeEEEEECCCCCCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE
Confidence            3468899999995  6666666653 3346789999    6998777665 4589999998775443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.84  E-value=5.9e-05  Score=51.23  Aligned_cols=80  Identities=9%  Similarity=-0.002  Sum_probs=52.0

Q ss_pred             ccccEEEEEEcCCCcEEE-----EEeCCCeEEEEecCCCcee-eeecceeeeecCceeeEEEccCCCEEEEeccccCCc-
Q psy8803          26 HTHQVLHVSFSHNGRYFA-----TCSKDGYILVWTSSYPSKV-KYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTP-   98 (111)
Q Consensus        26 ~~~~v~~i~~s~~~~~l~-----s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-   98 (111)
                      |...+..+.|||||+.|+     .|+++..|++||+.++... ..  .+..   .....++|+|++..++.+..+.... 
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~--~~~~---~~~~~~~wspDg~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD--VIEG---GKYATPKWTPDSKGFYYEWLPTDPSI  193 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC--CBSC---CTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc--ccCc---ccccceEEecCCCEEEEEEecCCCCC
Confidence            445788999999999988     4555678999999987654 11  1111   1114678999999887765332210 


Q ss_pred             ----cccCceEEEeec
Q psy8803          99 ----QSTSGEIAVFSL  110 (111)
Q Consensus        99 ----~~~~~~i~iw~~  110 (111)
                          ......|.+|++
T Consensus       194 ~~~~~~~~~~v~~~~l  209 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTL  209 (695)
T ss_dssp             CGGGGGGGCEEEEEET
T ss_pred             ccccCCCCCEEEEEEC
Confidence                012345888875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.76  E-value=0.00035  Score=47.58  Aligned_cols=80  Identities=11%  Similarity=0.075  Sum_probs=51.5

Q ss_pred             ccccEEEEEEcCCCcEEEEEeCCC-----eEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCc--
Q psy8803          26 HTHQVLHVSFSHNGRYFATCSKDG-----YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTP--   98 (111)
Q Consensus        26 ~~~~v~~i~~s~~~~~l~s~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--   98 (111)
                      |...+..++|||||+.|+.+..++     .|++||+.++......  ...   .....++|+|++..++.+..+....  
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~--~~~---~~~~~~~wspDg~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV--LER---VKFSCMAWTHDGKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE--EEE---ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc--ccC---cccceEEEEeCCCEEEEEEECCccccc
Confidence            334688999999999988765432     8999999987655411  111   1134688999999888776332210  


Q ss_pred             ------cccCceEEEeec
Q psy8803          99 ------QSTSGEIAVFSL  110 (111)
Q Consensus        99 ------~~~~~~i~iw~~  110 (111)
                            ......|.+|++
T Consensus       198 ~~~~~~~~~~~~v~~~~l  215 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVL  215 (710)
T ss_dssp             SSSCCCCCCCCEEEEEET
T ss_pred             cccccccCCCCEEEEEEC
Confidence                  011345888875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.70  E-value=0.0021  Score=38.97  Aligned_cols=87  Identities=8%  Similarity=-0.087  Sum_probs=54.0

Q ss_pred             ccccCeeeecCCCCceeeeeee----cccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeee-ecceeeeecCce
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLT----QHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKY-SHDMKTFSWKYT   76 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~----~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~   76 (111)
                      ...++.|..||..+++......    ++...+..+.++++ ++++++... ..+.+||.. +..... ...........+
T Consensus        42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  119 (314)
T 1pjx_A           42 GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGC  119 (314)
T ss_dssp             TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-TEEEEEETT-SCEEECCSBCTTSCBCBCC
T ss_pred             CCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-CCEEEEeCC-CCEEEEEeccCCCccccCC
Confidence            3567889999987665432211    25567899999999 887766654 378899987 443321 111011111345


Q ss_pred             eeEEEccCCCEEEEe
Q psy8803          77 QYSQFNESDTLLLVS   91 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~   91 (111)
                      +.+++.+++..+++.
T Consensus       120 ~~i~~d~~g~l~v~~  134 (314)
T 1pjx_A          120 NDCAFDYEGNLWITA  134 (314)
T ss_dssp             CEEEECTTSCEEEEE
T ss_pred             cCEEECCCCCEEEEe
Confidence            678899888766554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.66  E-value=0.002  Score=39.16  Aligned_cols=95  Identities=8%  Similarity=-0.005  Sum_probs=62.1

Q ss_pred             ccCeeeecCCCCceeeeeeecc-cccEEEEEEcCCCcEEEEEeC-CCeEEEEecCCCceee-e--ecceeeeecCceeeE
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQH-THQVLHVSFSHNGRYFATCSK-DGYILVWTSSYPSKVK-Y--SHDMKTFSWKYTQYS   79 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~s~~~-d~~i~iw~~~~~~~~~-~--~~~~~~~~~~~~~~v   79 (111)
                      .++.|..||. +++.+..+..+ ...+..+.+.++|+.+++.+. ++.+..++.. ++... .  ...+. ....+...+
T Consensus        54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~-~~~~~~~~v  130 (276)
T 3no2_A           54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIE-RPHAQFRQI  130 (276)
T ss_dssp             CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCS-SGGGSCSCC
T ss_pred             CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCC-cccccccCc
Confidence            4677899998 68888888764 357888999999999999877 7788888764 33322 1  11110 001123345


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +..+++..+++ .       ..++.|..||.
T Consensus       131 ~~~~~G~~lv~-~-------~~~~~v~~~d~  153 (276)
T 3no2_A          131 NKNKKGNYLVP-L-------FATSEVREIAP  153 (276)
T ss_dssp             EECTTSCEEEE-E-------TTTTEEEEECT
T ss_pred             eECCCCCEEEE-e-------cCCCEEEEECC
Confidence            66777776644 3       45677888775

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.61  E-value=0.00083  Score=43.12  Aligned_cols=96  Identities=9%  Similarity=0.005  Sum_probs=58.2

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCC--eEEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDG--YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      .++.|+.||...+........ ..... ++|+++++.|+.+..++  .|.+++.......................++++
T Consensus       150 ~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~  227 (409)
T 3hrp_A          150 DDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALD  227 (409)
T ss_dssp             TTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEEC
T ss_pred             CCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEe
Confidence            457888898886665444443 22233 89999999888877655  788888765433221100000011345678899


Q ss_pred             cCCCEEEEeccccCCccccCceEEEeec
Q psy8803          83 ESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      |++..++++        ..++.|..||+
T Consensus       228 p~~g~lyv~--------d~~~~I~~~d~  247 (409)
T 3hrp_A          228 ETEEWLYFV--------DSNKNFGRFNV  247 (409)
T ss_dssp             TTSSEEEEE--------CTTCEEEEEET
T ss_pred             CCCCeEEEE--------ECCCcEEEEEC
Confidence            966666663        33567888775

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.55  E-value=0.0017  Score=39.54  Aligned_cols=86  Identities=9%  Similarity=0.050  Sum_probs=56.7

Q ss_pred             cccCeeeecCC--CCcee-----eeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCce
Q psy8803           4 WYEEYKRLDYH--TPIVE-----TEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYT   76 (111)
Q Consensus         4 ~~d~~i~iw~~--~~~~~-----~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~   76 (111)
                      ..++.|..|++  .++..     ...+..+.+....++++++|+++++...++.|..||..+++....   +. +.-..+
T Consensus       168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~---i~-~p~~~~  243 (297)
T 3g4e_A          168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT---VK-LPVDKT  243 (297)
T ss_dssp             GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE---EE-CSSSBE
T ss_pred             CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE---EE-CCCCCc
Confidence            34567888876  33422     223333446778899999999998888888999999987665442   11 111345


Q ss_pred             eeEEEc-cCCCEEEEecc
Q psy8803          77 QYSQFN-ESDTLLLVSGV   93 (111)
Q Consensus        77 ~~v~~~-~~~~~~~~~~~   93 (111)
                      ++++|. |+...|+++..
T Consensus       244 t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          244 TSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEEEESGGGCEEEEEEB
T ss_pred             eEEEEeCCCCCEEEEEcC
Confidence            678898 77777766653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.49  E-value=0.0017  Score=40.52  Aligned_cols=77  Identities=10%  Similarity=0.134  Sum_probs=51.0

Q ss_pred             ccccEEEEEEcCCCcEEEEEeC-----CCeEEEEecCCCceeeee---cceeeeecCceeeEEEccCCCEEEEeccccCC
Q psy8803          26 HTHQVLHVSFSHNGRYFATCSK-----DGYILVWTSSYPSKVKYS---HDMKTFSWKYTQYSQFNESDTLLLVSGVHFGT   97 (111)
Q Consensus        26 ~~~~v~~i~~s~~~~~l~s~~~-----d~~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   97 (111)
                      +...+..++++++++++++-..     +..|.+||+.+++.....   .... ......+.+++.+++..++++.     
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~-~~~~~~~~v~vd~~~g~~yvtd-----  138 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT-LSNSFVNDLAVDLIHNFVYISD-----  138 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS-CTTCCCCEEEEETTTTEEEEEE-----
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc-ccccccceEEEecCCCEEEEEc-----
Confidence            4568899999999988776543     578999999877644311   0110 0112357889998766666654     


Q ss_pred             ccc---cCceEEEeec
Q psy8803          98 PQS---TSGEIAVFSL  110 (111)
Q Consensus        98 ~~~---~~~~i~iw~~  110 (111)
                        .   .++.|.+||+
T Consensus       139 --~~~~~~~~i~v~d~  152 (343)
T 2qe8_A          139 --PAPDDKAALIRVDL  152 (343)
T ss_dssp             --CCSGGGCEEEEEET
T ss_pred             --CccCCCCeEEEEEC
Confidence              3   5677888885

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.42  E-value=0.0012  Score=45.32  Aligned_cols=97  Identities=4%  Similarity=-0.084  Sum_probs=57.9

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCC--------------eEEEEecCCCceeeeecceeeee
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDG--------------YILVWTSSYPSKVKYSHDMKTFS   72 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~--------------~i~iw~~~~~~~~~~~~~~~~~~   72 (111)
                      ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.+.              .|.+|++.+......  .+....
T Consensus       189 ~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--lv~~~~  264 (741)
T 1yr2_A          189 RTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ--PVFATP  264 (741)
T ss_dssp             EEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE--EEECCT
T ss_pred             EEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE--EEeccC
Confidence            4699999998876542 222223357899999 8888776554              388888866431100  011000


Q ss_pred             c--CceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          73 W--KYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        73 ~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .  .....+.|+|++..++....+..   .....|.+||+
T Consensus       265 ~~~~~~~~~~~SpDG~~l~~~~~~~~---~~~~~l~~~d~  301 (741)
T 1yr2_A          265 ELPKRGHGASVSSDGRWVVITSSEGT---DPVNTVHVARV  301 (741)
T ss_dssp             TCTTCEEEEEECTTSCEEEEEEECTT---CSCCEEEEEEE
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEccC---CCcceEEEEEC
Confidence            0  12346788999988877652211   12457888885

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.42  E-value=0.0068  Score=36.90  Aligned_cols=93  Identities=11%  Similarity=0.003  Sum_probs=55.5

Q ss_pred             cCeeeecCCCCceeeeeeec----ccccEEEEEEcCCCcEEEEEeCC---------CeEEEEecCC-Cceeeeecceeee
Q psy8803           6 EEYKRLDYHTPIVETEVLTQ----HTHQVLHVSFSHNGRYFATCSKD---------GYILVWTSSY-PSKVKYSHDMKTF   71 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~----~~~~v~~i~~s~~~~~l~s~~~d---------~~i~iw~~~~-~~~~~~~~~~~~~   71 (111)
                      +..|.+||..+++.......    ....+..+.++|+|+++++....         ..-.+|.+.. +....    +.. 
T Consensus        72 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----~~~-  146 (297)
T 3g4e_A           72 GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK----YFD-  146 (297)
T ss_dssp             TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE----EEE-
T ss_pred             CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE----Eee-
Confidence            45678888876654322221    23457889999999987765321         2334554442 22221    111 


Q ss_pred             ecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          72 SWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .....+.++|+|++..++++.       +..+.|.+|++
T Consensus       147 ~~~~pngi~~spdg~~lyv~~-------~~~~~i~~~~~  178 (297)
T 3g4e_A          147 QVDISNGLDWSLDHKIFYYID-------SLSYSVDAFDY  178 (297)
T ss_dssp             EESBEEEEEECTTSCEEEEEE-------GGGTEEEEEEE
T ss_pred             ccccccceEEcCCCCEEEEec-------CCCCcEEEEec
Confidence            113456889999998887766       55677888874

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.41  E-value=0.007  Score=36.91  Aligned_cols=98  Identities=7%  Similarity=0.010  Sum_probs=67.0

Q ss_pred             cccCeeeecCCCCceeeeeeecc-----cccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeee-------
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQH-----THQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTF-------   71 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~-----~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-------   71 (111)
                      ..++.+.+.|..+.+.+..+.--     -..+..+.|. ++.+++....+..|.+.|..+++...... +..+       
T Consensus       123 ~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~-~~g~~~~~~~~  200 (266)
T 2iwa_A          123 DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL-LPNLRKKLIDE  200 (266)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE-CHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE-CCCcccccccc
Confidence            35778999999887766666521     1246678887 78888777677899999999987665211 1000       


Q ss_pred             ---ecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          72 ---SWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        72 ---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                         ...-.+.++|+|++..+++++       .....+...++
T Consensus       201 ~~~~~~v~nGIa~~~~~~~lfVTg-------k~~~~v~~i~l  235 (266)
T 2iwa_A          201 GFRDIDVLNGIAWDQENKRIFVTG-------KLWPKLFEIKL  235 (266)
T ss_dssp             TCTTCCCEEEEEEETTTTEEEEEE-------TTCSEEEEEEE
T ss_pred             cccccCceEEEEEcCCCCEEEEEC-------CCCCeEEEEEE
Confidence               002347899999999999988       55566666554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.35  E-value=0.0077  Score=36.06  Aligned_cols=93  Identities=10%  Similarity=-0.053  Sum_probs=57.4

Q ss_pred             ccCeeeecCCCCceeee-eeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           5 YEEYKRLDYHTPIVETE-VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      .++.+..+|. .++... .+......+..+.++++++++++...++.+..++. ++........   .....+..+++.+
T Consensus       118 ~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~---~~~~~~~~i~~~~  192 (299)
T 2z2n_A          118 NGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIP---TPASGPVGITKGN  192 (299)
T ss_dssp             TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS---STTCCEEEEEECT
T ss_pred             CCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCC---CCCCcceeEEECC
Confidence            4567888887 443322 22334567889999999999888877789999998 4443321100   0113355788888


Q ss_pred             CCCEEEEeccccCCccccCceEEEeec
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++...++ .       ..++.|.+||.
T Consensus       193 ~g~l~v~-~-------~~~~~i~~~~~  211 (299)
T 2z2n_A          193 DDALWFV-E-------IIGNKIGRITT  211 (299)
T ss_dssp             TSSEEEE-E-------TTTTEEEEECT
T ss_pred             CCCEEEE-c-------cCCceEEEECC
Confidence            8775444 3       33556776653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.33  E-value=0.00031  Score=44.43  Aligned_cols=56  Identities=7%  Similarity=-0.099  Sum_probs=29.0

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK   61 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~   61 (111)
                      +++.|+.+..||..+|+.+..+..+.    ...++|++..++.++.++.+..||.++++.
T Consensus        97 ~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           97 MGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             CCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred             EEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence            45678999999999998877776543    234567888888888899999999987653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.32  E-value=0.013  Score=38.48  Aligned_cols=99  Identities=11%  Similarity=-0.011  Sum_probs=62.8

Q ss_pred             ccCeeeecCCCCceeeeeeec--ccccEEEEEE--cCCCcEEEEEe------CCCeEEEEecCCCceee-eecceeee--
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQ--HTHQVLHVSF--SHNGRYFATCS------KDGYILVWTSSYPSKVK-YSHDMKTF--   71 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~--~~~~v~~i~~--s~~~~~l~s~~------~d~~i~iw~~~~~~~~~-~~~~~~~~--   71 (111)
                      ++.+|.+||+.+++.+..+.-  .......+.|  +|++++...++      .+++|.+|....+.-.. ..-.+...  
T Consensus       226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v  305 (462)
T 2ece_A          226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPL  305 (462)
T ss_dssp             SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEEC
T ss_pred             cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccc
Confidence            578999999998877777653  1234456656  99988655554      56678777665432111 00000100  


Q ss_pred             e-------------cCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          72 S-------------WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        72 ~-------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .             ......+.+++++..+.++.       -..+.|.++|+
T Consensus       306 ~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSn-------rg~d~VavfdV  350 (462)
T 2ece_A          306 EGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSL-------WGIGEVRQYDI  350 (462)
T ss_dssp             CSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEE-------TTTTEEEEEEC
T ss_pred             cccccccccccccCCCceeEEEECCCCCEEEEEe-------CCCCEEEEEEe
Confidence            0             12356789999999999987       55678999986

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.28  E-value=0.014  Score=37.51  Aligned_cols=76  Identities=7%  Similarity=0.067  Sum_probs=51.1

Q ss_pred             ccEEEEEEcCCCcEEEEEe-CCCeEEEEecCCCceeeeecc--e--------eeeecCceeeEEEccCCCEEEEeccccC
Q psy8803          28 HQVLHVSFSHNGRYFATCS-KDGYILVWTSSYPSKVKYSHD--M--------KTFSWKYTQYSQFNESDTLLLVSGVHFG   96 (111)
Q Consensus        28 ~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~--~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~   96 (111)
                      .....++++++++++++-. .+.+|+.|++..+........  .        ....+.....+++.+++ .++++-    
T Consensus       323 ~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad----  397 (409)
T 3hrp_A          323 AQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAE----  397 (409)
T ss_dssp             SSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEE----
T ss_pred             CCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEE----
Confidence            3478899999999888887 889999999766543321100  0        00113456789999985 555655    


Q ss_pred             CccccCceEEEeecC
Q psy8803          97 TPQSTSGEIAVFSLQ  111 (111)
Q Consensus        97 ~~~~~~~~i~iw~~~  111 (111)
                         ...+.|+.++++
T Consensus       398 ---~~n~~Ir~i~~e  409 (409)
T 3hrp_A          398 ---AWGKAIRKYAVE  409 (409)
T ss_dssp             ---STTCEEEEEEEC
T ss_pred             ---CCCCeEEEEEeC
Confidence               567778887764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.27  E-value=0.0098  Score=35.59  Aligned_cols=93  Identities=6%  Similarity=-0.105  Sum_probs=57.8

Q ss_pred             ccCeeeecCCCCceeeee-eecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEcc
Q psy8803           5 YEEYKRLDYHTPIVETEV-LTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      .++.+..+|. +++.... +......+..++++++++++++...++.+..|+. ++........   .....+..+++.+
T Consensus       160 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~---~~~~~~~~i~~~~  234 (299)
T 2z2n_A          160 QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIP---TPNARPHAITAGA  234 (299)
T ss_dssp             TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS---STTCCEEEEEECS
T ss_pred             CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECC---CCCCCceeEEECC
Confidence            3567788887 4543322 2334456889999999998888777789999998 5443221111   0113456788888


Q ss_pred             CCCEEEEeccccCCccccCceEEEeec
Q psy8803          84 SDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++...++ .       ..++.|..||.
T Consensus       235 ~g~l~v~-~-------~~~~~i~~~d~  253 (299)
T 2z2n_A          235 GIDLWFT-E-------WGANKIGRLTS  253 (299)
T ss_dssp             TTCEEEE-E-------TTTTEEEEEET
T ss_pred             CCCEEEe-c-------cCCceEEEECC
Confidence            8774443 2       24556777763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.27  E-value=0.0069  Score=36.99  Aligned_cols=82  Identities=6%  Similarity=-0.168  Sum_probs=52.0

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      .++.|..|+.. ++ ...+..+...+..+.++++|+++++...++.|..|+.. +................++.+++.|+
T Consensus        65 ~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~d  141 (305)
T 3dr2_A           65 VGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARD  141 (305)
T ss_dssp             TTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTT
T ss_pred             CCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCC
Confidence            45677788773 43 33444466778999999999988777667889999876 33222111111111234567888988


Q ss_pred             CCEEE
Q psy8803          85 DTLLL   89 (111)
Q Consensus        85 ~~~~~   89 (111)
                      +...+
T Consensus       142 G~l~~  146 (305)
T 3dr2_A          142 GAIWF  146 (305)
T ss_dssp             SCEEE
T ss_pred             CCEEE
Confidence            87654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.25  E-value=0.0088  Score=37.97  Aligned_cols=58  Identities=5%  Similarity=-0.152  Sum_probs=41.7

Q ss_pred             ccCeeeecCCCCceeeeeeecc-------cccEEEEEEcCCCcEEEEEeC--CCeEEEEecCCCceee
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQH-------THQVLHVSFSHNGRYFATCSK--DGYILVWTSSYPSKVK   63 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~-------~~~v~~i~~s~~~~~l~s~~~--d~~i~iw~~~~~~~~~   63 (111)
                      .++.|.++|..+.+.+..+.-.       ...-..+.|+|||+.|..+..  +..|.++| .+.+...
T Consensus        95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~  161 (373)
T 2mad_H           95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDD  161 (373)
T ss_pred             CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEe
Confidence            3678999999877766655321       123457899999998888764  47899999 8776544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.23  E-value=0.0025  Score=43.72  Aligned_cols=78  Identities=13%  Similarity=0.021  Sum_probs=48.3

Q ss_pred             cccEEEEEEcCCCcEEEEEeCC-----CeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCC----
Q psy8803          27 THQVLHVSFSHNGRYFATCSKD-----GYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGT----   97 (111)
Q Consensus        27 ~~~v~~i~~s~~~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----   97 (111)
                      ...+..+.|||||+.|+.+..+     ..|++||+.++.....  .....   ....++|+|+ ..++.+..+...    
T Consensus       162 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--~~~~~---~~~~~~wspD-~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          162 ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--ELKWV---KFSGLAWLGN-DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             -EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--EEEEE---ESCCCEESTT-SEEEEEECCCC-----
T ss_pred             CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--cCCCc---eeccEEEECC-CEEEEEEecCcccccc
Confidence            3467889999999988876543     4699999998775432  11111   1235788999 888776533220    


Q ss_pred             --ccccCceEEEeec
Q psy8803          98 --PQSTSGEIAVFSL  110 (111)
Q Consensus        98 --~~~~~~~i~iw~~  110 (111)
                        .......|.+|++
T Consensus       236 ~~~~~~~~~v~~~~l  250 (741)
T 1yr2_A          236 FQALNYNQTVWLHRL  250 (741)
T ss_dssp             ---CCCCCEEEEEET
T ss_pred             cccCCCCCEEEEEEC
Confidence              0011345777775

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.18  E-value=0.0042  Score=42.41  Aligned_cols=96  Identities=15%  Similarity=0.027  Sum_probs=57.8

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCC-------------eEEEEecCCCce----eeeecc
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDG-------------YILVWTSSYPSK----VKYSHD   67 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~-------------~i~iw~~~~~~~----~~~~~~   67 (111)
                      .+.+|+++|+.+++.+.. .........++|+ |++.|+.+..+.             .|++|++.+...    +.....
T Consensus       153 ~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~  230 (693)
T 3iuj_A          153 DWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIP  230 (693)
T ss_dssp             CEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSG
T ss_pred             ceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCC
Confidence            346899999998875432 1111123577899 999888877663             488888876432    211110


Q ss_pred             -eeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          68 -MKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        68 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                       -.    .....+.++|++..++.+....    ...+.|.++|+
T Consensus       231 ~~~----~~~~~~~~SpDg~~l~~~~~~~----~~~~~i~~~d~  266 (693)
T 3iuj_A          231 AQH----HRYVGATVTEDDRFLLISAANS----TSGNRLYVKDL  266 (693)
T ss_dssp             GGC----CSEEEEEECTTSCEEEEEEESS----SSCCEEEEEET
T ss_pred             CCC----eEEEEEEEcCCCCEEEEEEccC----CCCcEEEEEEC
Confidence             00    1123567899999887654111    12357888875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.13  E-value=0.00012  Score=46.33  Aligned_cols=58  Identities=16%  Similarity=0.014  Sum_probs=38.0

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK   61 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~   61 (111)
                      +++.|+.+..||..+|+.+-.+..  +.+.+..+..++..++.++.|+.++.||.++++.
T Consensus        14 ~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~   71 (369)
T 2hz6_A           14 VSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG   71 (369)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred             EEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence            456789999999999998877765  4455545556777888888999999999976543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.03  E-value=0.022  Score=35.19  Aligned_cols=89  Identities=11%  Similarity=-0.055  Sum_probs=52.5

Q ss_pred             eeeecCCCCceeeeeeec----ccccEEEEEEcCCCcEEEEEeC------CCeEEEEecCCCceeeeecceeeeecCcee
Q psy8803           8 YKRLDYHTPIVETEVLTQ----HTHQVLHVSFSHNGRYFATCSK------DGYILVWTSSYPSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~----~~~~v~~i~~s~~~~~l~s~~~------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   77 (111)
                      .+.+||..+++.......    ....+..+.++|+|+++++...      .+.|..++  .+.....    .. .....+
T Consensus       110 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~----~~-~~~~~~  182 (326)
T 2ghs_A          110 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL----FA-DISIPN  182 (326)
T ss_dssp             EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE----EE-EESSEE
T ss_pred             CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe----eC-CCcccC
Confidence            477788776653321111    1246889999999998776542      23455555  3332211    11 112356


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .++|+|++..++++.       ..++.|.+||+
T Consensus       183 ~i~~s~dg~~lyv~~-------~~~~~I~~~d~  208 (326)
T 2ghs_A          183 SICFSPDGTTGYFVD-------TKVNRLMRVPL  208 (326)
T ss_dssp             EEEECTTSCEEEEEE-------TTTCEEEEEEB
T ss_pred             CeEEcCCCCEEEEEE-------CCCCEEEEEEc
Confidence            788999998776665       45667888875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.02  E-value=0.0039  Score=42.56  Aligned_cols=79  Identities=15%  Similarity=0.100  Sum_probs=48.8

Q ss_pred             ccccEEEEEEcCCCcEEEE-----EeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCC---
Q psy8803          26 HTHQVLHVSFSHNGRYFAT-----CSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGT---   97 (111)
Q Consensus        26 ~~~~v~~i~~s~~~~~l~s-----~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---   97 (111)
                      +...+..+.|||||+.|+-     |++...|+++|+.+++....  .+...   ....++|+ ++..++.+..+...   
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~---k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKDV---KFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEEE---ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCCc---eeccEEEe-CCCEEEEEEecCccccc
Confidence            4456888999999998873     33446799999998775442  11111   12356788 88888776533210   


Q ss_pred             --ccccCceEEEeec
Q psy8803          98 --PQSTSGEIAVFSL  110 (111)
Q Consensus        98 --~~~~~~~i~iw~~  110 (111)
                        .......|.+|++
T Consensus       201 ~~~~~~~~~v~~~~l  215 (693)
T 3iuj_A          201 LSARTDQHKVYFHRL  215 (693)
T ss_dssp             ----CCCCEEEEEET
T ss_pred             ccccCCCcEEEEEEC
Confidence              0012345777765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.93  E-value=0.025  Score=37.17  Aligned_cols=85  Identities=4%  Similarity=-0.071  Sum_probs=57.2

Q ss_pred             ccCeeeecCCCCceeeeeeecc---cccEEEEEEcCCCcEEEEEe-------------------CCCeEEEEecCCCcee
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQH---THQVLHVSFSHNGRYFATCS-------------------KDGYILVWTSSYPSKV   62 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~---~~~v~~i~~s~~~~~l~s~~-------------------~d~~i~iw~~~~~~~~   62 (111)
                      ..+.+.+.|..+.+.+.++..-   ...-+.+-|+|+++.+++..                   ...+|.+||+...+..
T Consensus       162 ~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~  241 (462)
T 2ece_A          162 GPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI  241 (462)
T ss_dssp             SCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred             CCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence            3478999999989888888622   23345688899999888884                   4679999999876544


Q ss_pred             eeecceeee-ecCceeeEEE--ccCCCEEEEec
Q psy8803          63 KYSHDMKTF-SWKYTQYSQF--NESDTLLLVSG   92 (111)
Q Consensus        63 ~~~~~~~~~-~~~~~~~v~~--~~~~~~~~~~~   92 (111)
                      ..   +... .-.....+.|  +|++.+.++..
T Consensus       242 ~t---I~vg~~g~~P~~i~f~~~Pdg~~aYV~~  271 (462)
T 2ece_A          242 HS---LTLGEENRMALELRPLHDPTKLMGFINM  271 (462)
T ss_dssp             EE---EESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred             eE---EecCCCCCccceeEeeECCCCCEEEEEE
Confidence            31   1110 0012334545  99998887766

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.90  E-value=0.005  Score=42.19  Aligned_cols=84  Identities=8%  Similarity=-0.057  Sum_probs=56.1

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      ++|++..||+.+++.+-.+..+. ....-.+...+.+++.++.|+.++.||.++++.+-....-..   .....+.|..+
T Consensus       453 ~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~---~~~~p~ty~~~  528 (689)
T 1yiq_A          453 WSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASG---VMAAPVTYSVD  528 (689)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC---CCSCCEEEEET
T ss_pred             cceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCC---cccCceEEEEC
Confidence            46899999999999887766443 233335566788888999999999999999877642111100   11124566667


Q ss_pred             CCEEEEec
Q psy8803          85 DTLLLVSG   92 (111)
Q Consensus        85 ~~~~~~~~   92 (111)
                      +..+++..
T Consensus       529 G~qyv~~~  536 (689)
T 1yiq_A          529 GEQYVTFM  536 (689)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEEE
Confidence            77665544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.87  E-value=0.03  Score=34.15  Aligned_cols=51  Identities=6%  Similarity=-0.139  Sum_probs=32.7

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCC------CeEEEEecCCC
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKD------GYILVWTSSYP   59 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d------~~i~iw~~~~~   59 (111)
                      +.|..+|..+++.... . .......++|+||++.|..+...      ..|.+|++...
T Consensus       169 ~~v~~~d~~~g~~~~~-~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          169 HSVYRLPPDGSPLQRM-A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             EEEEEECSSSCCCEEE-E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             CeEEEEcCCCCcEEEE-e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence            4566666654543322 2 33456789999999866665544      68999988654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.86  E-value=0.03  Score=34.10  Aligned_cols=87  Identities=10%  Similarity=0.089  Sum_probs=59.0

Q ss_pred             ccCeeeecCCCCceeeeeeecc--c---ccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeee--ccee------ee
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQH--T---HQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYS--HDMK------TF   71 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~--~---~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~------~~   71 (111)
                      .++.+.++|..+.+.+..+.-.  .   ..+..+.|. +|++++..-.+..|.+.|.++++....-  ....      .-
T Consensus       144 Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~  222 (262)
T 3nol_A          144 GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPS  222 (262)
T ss_dssp             SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCS
T ss_pred             CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccC
Confidence            3566888888877766666421  1   344567776 7888877767889999999998766511  1010      00


Q ss_pred             ecCceeeEEEccCCCEEEEec
Q psy8803          72 SWKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~~   92 (111)
                      ...-.+.+|++|+...++++|
T Consensus       223 ~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          223 PIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             SCCCEEEEEEETTTTEEEEEE
T ss_pred             cCCceEEEEEcCCCCEEEEEC
Confidence            113458899999999999987

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.85  E-value=0.011  Score=40.00  Aligned_cols=95  Identities=4%  Similarity=-0.072  Sum_probs=59.5

Q ss_pred             CeeeecCCCC--cee-eeeeecccccEEEEEEcCCCcEEEEE-eCCCeEEEEecCCCce-----eeeecce-eeee-cCc
Q psy8803           7 EYKRLDYHTP--IVE-TEVLTQHTHQVLHVSFSHNGRYFATC-SKDGYILVWTSSYPSK-----VKYSHDM-KTFS-WKY   75 (111)
Q Consensus         7 ~~i~iw~~~~--~~~-~~~~~~~~~~v~~i~~s~~~~~l~s~-~~d~~i~iw~~~~~~~-----~~~~~~~-~~~~-~~~   75 (111)
                      +.|.+.|..+  ++. +..+. -....-++.++|||++++.+ ..+..+.++|+.....     +.....+ ..+. -..
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g  332 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  332 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC
T ss_pred             CcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC
Confidence            3477888876  433 33333 22355678999999876555 4677999999985421     0000000 0000 134


Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ...++|+|++ .+.++.       --+++|.+||+
T Consensus       333 P~h~aF~~dG-~aY~t~-------~ldsqV~kwdi  359 (595)
T 1fwx_A          333 PLHTAFDGRG-NAYTSL-------FLDSQVVKWNI  359 (595)
T ss_dssp             EEEEEECTTS-EEEEEE-------TTTTEEEEEEH
T ss_pred             cceEEECCCC-eEEEEE-------ecCCcEEEEEh
Confidence            5688999999 666666       77889999996

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.82  E-value=0.0089  Score=38.38  Aligned_cols=58  Identities=9%  Similarity=-0.012  Sum_probs=44.3

Q ss_pred             cCeeeecCCCCceeeeeeeccc-------ccEEEEEEcCCCcEEEEEeC--CCeEEEEecCCCceee
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHT-------HQVLHVSFSHNGRYFATCSK--DGYILVWTSSYPSKVK   63 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~-------~~v~~i~~s~~~~~l~s~~~--d~~i~iw~~~~~~~~~   63 (111)
                      +++|.+||..+.+.+..+.-..       ..-..+.|+|||+.+..+..  +..+.++|+.+.+...
T Consensus       108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~  174 (386)
T 3sjl_D          108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR  174 (386)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred             CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence            6789999999988877764211       23456899999998777653  6799999999877655

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.79  E-value=0.032  Score=33.33  Aligned_cols=91  Identities=13%  Similarity=0.050  Sum_probs=55.9

Q ss_pred             cCeeeecCCCCceee-eeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           6 EEYKRLDYHTPIVET-EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         6 d~~i~iw~~~~~~~~-~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      ++.|..+|.. ++.. ..+......+..+.++++++++++...++.+..++.. +........  . .......+++.++
T Consensus        82 ~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~--~-~~~~~~~i~~d~~  156 (300)
T 2qc5_A           82 ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP--N-KGSYPAFITLGSD  156 (300)
T ss_dssp             TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS--S-TTCCEEEEEECTT
T ss_pred             CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC--C-CCCCceeEEECCC
Confidence            5678888877 5432 2222234678899999999998888777889999887 433321100  0 1134567788887


Q ss_pred             CCEEEEeccccCCccccCceEEEee
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      +... ++.       ...+.|..+|
T Consensus       157 g~l~-v~~-------~~~~~i~~~~  173 (300)
T 2qc5_A          157 NALW-FTE-------NQNNSIGRIT  173 (300)
T ss_dssp             SSEE-EEE-------TTTTEEEEEC
T ss_pred             CCEE-EEe-------cCCCeEEEEC
Confidence            7744 433       2344566654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.72  E-value=0.036  Score=33.09  Aligned_cols=92  Identities=8%  Similarity=-0.036  Sum_probs=55.2

Q ss_pred             cCeeeecCCCCceeee-eeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           6 EEYKRLDYHTPIVETE-VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      ++.|..++. .++... .+..+...+..+.++++++++++....+.+.+++.. +........   .....+..+++.++
T Consensus       166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~~~i~~d~~  240 (300)
T 2qc5_A          166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GEISEYDIP---TPNARPHAITAGKN  240 (300)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEEEECS---STTCCEEEEEECST
T ss_pred             CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-CcEEEEECC---CCCCCceEEEECCC
Confidence            566777777 344322 222344578899999999988887777889999983 332221111   01133557888888


Q ss_pred             CCEEEEeccccCCccccCceEEEeec
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +...++ .       ..++.|..+|.
T Consensus       241 g~l~v~-~-------~~~~~i~~~~~  258 (300)
T 2qc5_A          241 SEIWFT-E-------WGANQIGRITN  258 (300)
T ss_dssp             TCEEEE-E-------TTTTEEEEECT
T ss_pred             CCEEEe-c-------cCCCeEEEECC
Confidence            764443 3       23455666653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.72  E-value=0.026  Score=35.93  Aligned_cols=67  Identities=7%  Similarity=-0.092  Sum_probs=45.4

Q ss_pred             EEEcCCCcEEEEE-e---C-----CCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccc-cC
Q psy8803          33 VSFSHNGRYFATC-S---K-----DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQS-TS  102 (111)
Q Consensus        33 i~~s~~~~~l~s~-~---~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~  102 (111)
                      +.++||++.+..+ .   .     +..+.++|+.+.+....   +.-.  .....++|+|++..++++.       . .+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~---i~vg--~~p~gi~~s~Dg~~l~va~-------~~~~  336 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP---ISNG--HDSDAIIAAQDGASDNYAN-------SAGT  336 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC---CEEE--EEECEEEECCSSSCEEEEE-------ETTT
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE---EECC--CCcceEEECCCCCEEEEEc-------cCCC
Confidence            6799997655543 3   1     23566999998776652   2211  1355789999998776766       5 58


Q ss_pred             ceEEEeecC
Q psy8803         103 GEIAVFSLQ  111 (111)
Q Consensus       103 ~~i~iw~~~  111 (111)
                      +.|.++|++
T Consensus       337 ~~VsVID~~  345 (368)
T 1mda_H          337 EVLDIYDAA  345 (368)
T ss_dssp             TEEEEEESS
T ss_pred             CeEEEEECC
Confidence            899999974

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.68  E-value=0.044  Score=33.48  Aligned_cols=87  Identities=8%  Similarity=0.006  Sum_probs=59.3

Q ss_pred             ccCeeeecCCCCceeeeeeec--c---cccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeee--cce-------ee
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQ--H---THQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYS--HDM-------KT   70 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~--~---~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~~~-------~~   70 (111)
                      .++.+.++|..+.+.+..+.-  +   -..+..+.|. +|++++..-....|.+.|.++++....-  ...       ..
T Consensus       153 Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~  231 (268)
T 3nok_A          153 GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVT  231 (268)
T ss_dssp             SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCC
T ss_pred             CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccccccc
Confidence            467788888888777666642  1   1245667776 7888877767789999999998766511  000       00


Q ss_pred             eecCceeeEEEccCCCEEEEec
Q psy8803          71 FSWKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        71 ~~~~~~~~v~~~~~~~~~~~~~   92 (111)
                      -...-.+.+|++|+...++++|
T Consensus       232 ~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          232 NPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CTTCCEEEEEECTTTCCEEEEE
T ss_pred             CcCCceEEEEEcCCCCEEEEeC
Confidence            0113468899999888888887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.67  E-value=0.049  Score=33.87  Aligned_cols=87  Identities=5%  Similarity=-0.165  Sum_probs=55.3

Q ss_pred             cCeeeecCCCCceeeeeeec------ccccEEEEEEcCC-CcEEEEEe---CCCeEEEEecCCCceeeee----cc----
Q psy8803           6 EEYKRLDYHTPIVETEVLTQ------HTHQVLHVSFSHN-GRYFATCS---KDGYILVWTSSYPSKVKYS----HD----   67 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~------~~~~v~~i~~s~~-~~~l~s~~---~d~~i~iw~~~~~~~~~~~----~~----   67 (111)
                      ++.|.+||..+++.+..+..      +...+..++++++ +..+++-.   .++.|.+||+..+......    ..    
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED  171 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence            46788999988876665542      2245688999986 56666655   6789999998765433211    00    


Q ss_pred             --ee----eee----------c-CceeeEEEccCCCEEEEec
Q psy8803          68 --MK----TFS----------W-KYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        68 --~~----~~~----------~-~~~~~v~~~~~~~~~~~~~   92 (111)
                        +.    .+.          | ...+.++++|++..++++.
T Consensus       172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~  213 (343)
T 2qe8_A          172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP  213 (343)
T ss_dssp             CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred             cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence              00    000          1 2357899999988776654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.58  E-value=0.047  Score=33.37  Aligned_cols=92  Identities=9%  Similarity=0.051  Sum_probs=55.0

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      ++.+|.|+.+|+.+++.+..+......--.+.+.. ++++...-.++.+.++|..+.+...... .....|      ...
T Consensus        71 tG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~-~~~eGw------GLt  142 (268)
T 3nok_A           71 TGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTR-YSGEGW------GLC  142 (268)
T ss_dssp             ETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEE-CSSCCC------CEE
T ss_pred             cCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEe-CCCcee------EEe
Confidence            45677799999999987776621111122355543 3555555678899999999877665211 011112      223


Q ss_pred             cCCCEEEEeccccCCccccCceEEEeec
Q psy8803          83 ESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +++..++++-        .+++|.++|.
T Consensus       143 ~Dg~~L~vSd--------Gs~~l~~iDp  162 (268)
T 3nok_A          143 YWNGKLVRSD--------GGTMLTFHEP  162 (268)
T ss_dssp             EETTEEEEEC--------SSSEEEEECT
T ss_pred             cCCCEEEEEC--------CCCEEEEEcC
Confidence            4566776653        3677888874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.53  E-value=0.053  Score=32.64  Aligned_cols=89  Identities=12%  Similarity=0.066  Sum_probs=59.7

Q ss_pred             ccccCeeeecCCCCceeeeeeeccc-----ccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeee--ccee------
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHT-----HQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYS--HDMK------   69 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~-----~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~------   69 (111)
                      |..++.|.++|..+.+.+..+.-..     ..+..+.|. +|++++..-.+..|.+.|.++++....-  ....      
T Consensus       120 Sdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~  198 (243)
T 3mbr_X          120 SDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADAL  198 (243)
T ss_dssp             ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSC
T ss_pred             ECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccc
Confidence            3346778888888777666665221     345566665 6788877766779999999998766511  1110      


Q ss_pred             -eeecCceeeEEEccCCCEEEEec
Q psy8803          70 -TFSWKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        70 -~~~~~~~~~v~~~~~~~~~~~~~   92 (111)
                       .....-.+.+|++|+...++++|
T Consensus       199 ~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          199 TDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             cCCcCCceEEEEEcCCCCEEEEEC
Confidence             00113468899999999999987

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.53  E-value=0.026  Score=38.66  Aligned_cols=82  Identities=7%  Similarity=-0.068  Sum_probs=54.6

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCC
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESD   85 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   85 (111)
                      .|.+..||..+++.+-.+. +...+....+..++.+++.++.++.+++||.++++.+.....-..   .....+.|.+++
T Consensus       456 ~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~---~~~~p~~y~~~G  531 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG---VVAAPSTYMVDG  531 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC---CCSCCEEEEETT
T ss_pred             ccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC---cccCCEEEEeCC
Confidence            4889999999998877665 333444455667788888889999999999999876652111100   111245566677


Q ss_pred             CEEEEe
Q psy8803          86 TLLLVS   91 (111)
Q Consensus        86 ~~~~~~   91 (111)
                      ..+++.
T Consensus       532 ~~~v~~  537 (677)
T 1kb0_A          532 RQYVSV  537 (677)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666555

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.46  E-value=0.06  Score=36.58  Aligned_cols=101  Identities=12%  Similarity=0.051  Sum_probs=62.6

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCC---------------eEEEEecCC-------Cc
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDG---------------YILVWTSSY-------PS   60 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~---------------~i~iw~~~~-------~~   60 (111)
                      ..+++.+.+.|..+.+....+.- .+.--.+.++|+|+++++.+.+.               .+.+.|...       +.
T Consensus       171 ~~~~~~vtvID~~t~~v~~qI~V-gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk  249 (595)
T 1fwx_A          171 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  249 (595)
T ss_dssp             GGEEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             cccCceEEEEECCCCeEEEEEEe-CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence            35677888888887766665542 12445678999999888887653               244444321       00


Q ss_pred             -------eee--ee--c-c-eeeee-cCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          61 -------KVK--YS--H-D-MKTFS-WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        61 -------~~~--~~--~-~-~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                             ..-  ..  . . +..+. .....++.++|++.++++++       -.+.+|.++|++
T Consensus       250 ~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~-------~~s~~VsVid~~  307 (595)
T 1fwx_A          250 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAG-------KLSPTVTVLDVT  307 (595)
T ss_dssp             SEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEEC-------TTSSBEEEEEGG
T ss_pred             eeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeC-------CCCCeEEEEECc
Confidence                   000  00  0 0 11111 02346799999999999988       778889999863

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.45  E-value=0.069  Score=32.96  Aligned_cols=82  Identities=11%  Similarity=-0.042  Sum_probs=51.4

Q ss_pred             cCeeeecCCC--Cc-e-----eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCcee
Q psy8803           6 EEYKRLDYHT--PI-V-----ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ   77 (111)
Q Consensus         6 d~~i~iw~~~--~~-~-----~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   77 (111)
                      ++.|.+|++.  ++ +     ....+.........+.++++|+++++...++.|..|+.. +.....   +. ..-..+.
T Consensus       200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~---i~-~~~~~~~  274 (326)
T 2ghs_A          200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIAR---YE-VPGKQTT  274 (326)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEE---EE-CSCSBEE
T ss_pred             CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEE---EE-CCCCCcE
Confidence            5678888875  44 2     122222234566789999999988887777889999984 333321   11 1112456


Q ss_pred             eEEEc-cCCCEEEEec
Q psy8803          78 YSQFN-ESDTLLLVSG   92 (111)
Q Consensus        78 ~v~~~-~~~~~~~~~~   92 (111)
                      .++|. +++..++++.
T Consensus       275 ~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          275 CPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EEEEESTTSCEEEEEE
T ss_pred             EEEEecCCCCEEEEEe
Confidence            78898 7777776654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.14  E-value=0.12  Score=32.62  Aligned_cols=98  Identities=7%  Similarity=-0.037  Sum_probs=63.1

Q ss_pred             cCeeeecCCC---Cceeeeeee--ccc-----------ccEEEEEEcCCCcEEEEEeCC-CeEEEEecCCCceee-eecc
Q psy8803           6 EEYKRLDYHT---PIVETEVLT--QHT-----------HQVLHVSFSHNGRYFATCSKD-GYILVWTSSYPSKVK-YSHD   67 (111)
Q Consensus         6 d~~i~iw~~~---~~~~~~~~~--~~~-----------~~v~~i~~s~~~~~l~s~~~d-~~i~iw~~~~~~~~~-~~~~   67 (111)
                      +..+..+|..   +++.+....  ...           .....++..++|+.+++.+.. +.|...+........ ....
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~  178 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES  178 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC
Confidence            5667788887   665544332  221           247899999999999998877 777777665442221 1111


Q ss_pred             eeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          68 MKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .+.......+.++++|++..|++..       + .+.+..+|++
T Consensus       179 ~~~~~~~G~nGIv~~pdg~~Liv~~-------~-~g~L~~fD~~  214 (334)
T 2p9w_A          179 GNGGQRPGYSGITFDPHSNKLIAFG-------G-PRALTAFDVS  214 (334)
T ss_dssp             CCSSSCCSCSEEEEETTTTEEEEES-------S-SSSEEEEECS
T ss_pred             CCcccccCcceEEEeCCCCEEEEEc-------C-CCeEEEEcCC
Confidence            1111112356899999999998876       5 7778877753

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.08  E-value=0.07  Score=36.61  Aligned_cols=22  Identities=5%  Similarity=-0.331  Sum_probs=17.5

Q ss_pred             ccccCeeeecCCCCceeeeeee
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLT   24 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~   24 (111)
                      ...+|.+.++|..+|+.+..+.
T Consensus       333 ~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          333 APKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             CCTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCCCEEEEEECCCCCEecccc
Confidence            4568899999999998776554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.06  E-value=0.14  Score=33.63  Aligned_cols=97  Identities=12%  Similarity=0.082  Sum_probs=58.9

Q ss_pred             cCeeeecCCCCceeeeeeecc----cccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee--------------eecc
Q psy8803           6 EEYKRLDYHTPIVETEVLTQH----THQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK--------------YSHD   67 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~----~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~--------------~~~~   67 (111)
                      +..||.-++.++...+.+.-.    -+.+..+..+|+|++||..+. ..+.|-.+..+....              +..+
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~  118 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE  118 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCC
Confidence            456776666654444444322    235788999999999999875 588888887321000              1010


Q ss_pred             eeeeecCceeeEEEccCC---CEEEEeccccCCccccCceEEEeecC
Q psy8803          68 MKTFSWKYTQYSQFNESD---TLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        68 ~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .....-.++..+.|+|-+   ..+++.        ..|++|++||+.
T Consensus       119 ~~~~~~s~I~qVlWHPl~~~ds~LVVL--------tsD~~Ir~yDl~  157 (452)
T 3pbp_A          119 EEVGPKSSIKKVLFHPKSYRDSCIVVL--------KEDDTITMFDIL  157 (452)
T ss_dssp             CC--CCCCEEEEEECTTBGGGCEEEEE--------ETTSCEEEEETT
T ss_pred             cccCCCCceeEEEeccccCCCCeEEEE--------ecCCEEEEEEcc
Confidence            000011457778889843   455554        468899999974

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=95.89  E-value=0.14  Score=31.23  Aligned_cols=97  Identities=8%  Similarity=0.044  Sum_probs=57.0

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceee--eecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKT--FSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~v   79 (111)
                      +++.++.+.++|..+.+.+..+.--...  .+.+++|++.+..+..++.+.++|..+.+...... +..  ......+.+
T Consensus        81 ~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~-Vg~~~~p~~~~nel  157 (266)
T 2iwa_A           81 VVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN-VKYNGHRVIRLNEL  157 (266)
T ss_dssp             EETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE-CEETTEECCCEEEE
T ss_pred             EEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE-ECCCCcccccceeE
Confidence            3567889999999988888877521122  23355676655555567899999998866554211 110  001123455


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .|. ++ .+.+..       -.++.|.+-|.
T Consensus       158 e~~-dg-~lyvn~-------~~~~~V~vID~  179 (266)
T 2iwa_A          158 EYI-NG-EVWANI-------WQTDCIARISA  179 (266)
T ss_dssp             EEE-TT-EEEEEE-------TTSSEEEEEET
T ss_pred             EEE-CC-EEEEec-------CCCCeEEEEEC
Confidence            556 44 454443       34566777765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=95.73  E-value=0.15  Score=30.36  Aligned_cols=94  Identities=5%  Similarity=-0.098  Sum_probs=52.3

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeC--CCeEEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSK--DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      .+.|.+++...................++++|+ +.++++-..  .+.|..+++........    ........+.++++
T Consensus       100 ~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~----~~~~~~~P~gia~d  175 (267)
T 1npe_A          100 LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL----AQDNLGLPNGLTFD  175 (267)
T ss_dssp             TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE----ECTTCSCEEEEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE----EECCCCCCcEEEEc
Confidence            345556555422211111111245688999996 555555433  46788887764322111    00112345678899


Q ss_pred             cCCCEEEEeccccCCccccCceEEEeec
Q psy8803          83 ESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +++..+.++-       ...+.|.++|+
T Consensus       176 ~~~~~lyv~d-------~~~~~I~~~~~  196 (267)
T 1npe_A          176 AFSSQLCWVD-------AGTHRAECLNP  196 (267)
T ss_dssp             TTTTEEEEEE-------TTTTEEEEEET
T ss_pred             CCCCEEEEEE-------CCCCEEEEEec
Confidence            9877777765       55667887775

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=95.71  E-value=0.06  Score=35.02  Aligned_cols=57  Identities=5%  Similarity=0.101  Sum_probs=46.6

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCc-EEEEEe-CCCeEEEEecCCCceee
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR-YFATCS-KDGYILVWTSSYPSKVK   63 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~-~d~~i~iw~~~~~~~~~   63 (111)
                      ++.|.+.|..+.+.+.++..- .....+.|+||++ .+++.. .++.+.++|+.+.+...
T Consensus       349 s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~  407 (426)
T 3c75_H          349 SRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELR  407 (426)
T ss_dssp             EEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             CCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEE
Confidence            457999999999888887632 3578999999998 777777 58999999999987765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.20  E-value=0.27  Score=29.97  Aligned_cols=58  Identities=9%  Similarity=0.130  Sum_probs=40.7

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      ++.++.+.++|..+.+.+..+.- ...-..+  ++|++.|..+.....|.++|..+.+...
T Consensus       103 tw~~~~v~v~D~~t~~~~~ti~~-~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~  160 (262)
T 3nol_A          103 TWKNGLGFVWNIRNLRQVRSFNY-DGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVR  160 (262)
T ss_dssp             ESSSSEEEEEETTTCCEEEEEEC-SSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEE
T ss_pred             EeeCCEEEEEECccCcEEEEEEC-CCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEE
Confidence            56788999999999988888863 2222333  4566655555557789999998866554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=95.14  E-value=0.29  Score=29.98  Aligned_cols=70  Identities=16%  Similarity=0.218  Sum_probs=45.2

Q ss_pred             cEEEEEEcC-CCcEEEEEeC-----------------CCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEE
Q psy8803          29 QVLHVSFSH-NGRYFATCSK-----------------DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLV   90 (111)
Q Consensus        29 ~v~~i~~s~-~~~~l~s~~~-----------------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   90 (111)
                      ....+++.+ +|+++++-..                 ++.+..+|.........   ..  .....+.++++|++..+++
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~---~~--~~~~p~gia~~~dg~~lyv  201 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL---LK--ELHVPGGAEVSADSSFVLV  201 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE---EE--EESCCCEEEECTTSSEEEE
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe---cc--CCccCcceEECCCCCEEEE
Confidence            467899999 8988877532                 35677787765543221   11  1234567899999887766


Q ss_pred             eccccCCccccCceEEEeec
Q psy8803          91 SGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        91 ~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +-       ...+.|.++++
T Consensus       202 ~d-------~~~~~I~~~~~  214 (322)
T 2fp8_A          202 AE-------FLSHQIVKYWL  214 (322)
T ss_dssp             EE-------GGGTEEEEEES
T ss_pred             Ee-------CCCCeEEEEEC
Confidence            54       44566777765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=94.63  E-value=0.36  Score=28.64  Aligned_cols=83  Identities=12%  Similarity=-0.109  Sum_probs=47.7

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      ++.|..++...+.....+.........++++++ +.++++-...+.|.++++........    ........+.++++|+
T Consensus        57 ~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~----~~~~~~~P~~i~vd~~  132 (267)
T 1npe_A           57 EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL----FDTGLVNPRGIVTDPV  132 (267)
T ss_dssp             TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----ECSSCSSEEEEEEETT
T ss_pred             CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE----EECCCCCccEEEEeeC
Confidence            455666666543322222222246788999986 55666666678899998865332111    0011134567889987


Q ss_pred             CCEEEEec
Q psy8803          85 DTLLLVSG   92 (111)
Q Consensus        85 ~~~~~~~~   92 (111)
                      +..++++.
T Consensus       133 ~g~lyv~~  140 (267)
T 1npe_A          133 RGNLYWTD  140 (267)
T ss_dssp             TTEEEEEE
T ss_pred             CCEEEEEE
Confidence            66665543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.50  E-value=0.57  Score=30.34  Aligned_cols=71  Identities=10%  Similarity=0.055  Sum_probs=46.6

Q ss_pred             EEEEEEcC-CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEe
Q psy8803          30 VLHVSFSH-NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVF  108 (111)
Q Consensus        30 v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw  108 (111)
                      ...++++| ++.++++-..++.|..++.......... ....  ....+.++|+|++..++++-       ...+.|..+
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~-~~~~--~~~P~gia~~pdG~~lyv~d-------~~~~~I~~~  297 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF-TIQD--SGWEFHIQFHPSGNYAYIVV-------VNQHYILRS  297 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE-ECSS--SSCCEEEEECTTSSEEEEEE-------TTTTEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-EcCC--CCcceeEEEcCCCCEEEEEE-------CCCCEEEEE
Confidence            45678899 6888887777889999998765432110 0100  12356799999998776665       456667776


Q ss_pred             ec
Q psy8803         109 SL  110 (111)
Q Consensus       109 ~~  110 (111)
                      +.
T Consensus       298 ~~  299 (430)
T 3tc9_A          298 DY  299 (430)
T ss_dssp             EE
T ss_pred             eC
Confidence            53

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=94.47  E-value=0.43  Score=28.76  Aligned_cols=58  Identities=5%  Similarity=-0.003  Sum_probs=40.9

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      ++.++.+.++|..+.+.+.++... ..-..++  +++..|..+..+..|.++|..+.+...
T Consensus        81 tw~~~~v~v~D~~tl~~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~  138 (243)
T 3mbr_X           81 TWRNHEGFVYDLATLTPRARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVG  138 (243)
T ss_dssp             ESSSSEEEEEETTTTEEEEEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEE
T ss_pred             EeeCCEEEEEECCcCcEEEEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEE
Confidence            567889999999999988888732 2224444  566555455557899999998865544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.33  E-value=0.32  Score=33.32  Aligned_cols=59  Identities=7%  Similarity=-0.123  Sum_probs=43.5

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      .++|.+.-||..+++.+-...... ......+...+.+++.++.|+.++.||.++++.+.
T Consensus       435 ~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~  493 (668)
T 1kv9_A          435 VVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW  493 (668)
T ss_dssp             GCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence            356899999999998876665332 22333344567888888999999999999887654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.22  E-value=0.7  Score=31.24  Aligned_cols=84  Identities=10%  Similarity=-0.025  Sum_probs=50.3

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      .+|.+.-||..+++.+-+..... .+..-.....+.+++.++.|+.++.+|.++++.+-....-..+   ....+.+..+
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~---~a~P~~y~~~  539 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI---VSPPITWEQD  539 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC---CSCCEEEEET
T ss_pred             CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCc---ccCceEEEEC
Confidence            36889999999998776554221 2111112224667777899999999999998766421111111   1123556567


Q ss_pred             CCEEEEec
Q psy8803          85 DTLLLVSG   92 (111)
Q Consensus        85 ~~~~~~~~   92 (111)
                      +..+++..
T Consensus       540 G~qYv~~~  547 (582)
T 1flg_A          540 GEQYLGVT  547 (582)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEEE
Confidence            76665554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=93.86  E-value=0.74  Score=29.27  Aligned_cols=93  Identities=8%  Similarity=-0.071  Sum_probs=51.5

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCC-CeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKD-GYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      +.|.+.+.........+.........++++|. +.++.+-... +.|...++........    ........+.++++|+
T Consensus       181 ~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~----~~~~~~~PnGlavd~~  256 (386)
T 3v65_B          181 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII----ADTHLFWPNGLTIDYA  256 (386)
T ss_dssp             TEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----ECSSCSCEEEEEEEGG
T ss_pred             CeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE----EECCCCCeeeEEEeCC
Confidence            34555555422222222223345688999986 5555555444 7788888765432221    0011234568889987


Q ss_pred             CCEEEEeccccCCccccCceEEEeec
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +..|..+-       ...+.|..+|+
T Consensus       257 ~~~lY~aD-------~~~~~I~~~d~  275 (386)
T 3v65_B          257 GRRMYWVD-------AKHHVIERANL  275 (386)
T ss_dssp             GTEEEEEE-------TTTTEEEEECT
T ss_pred             CCEEEEEE-------CCCCEEEEEeC
Confidence            77776654       44556766654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=93.84  E-value=0.71  Score=28.94  Aligned_cols=72  Identities=7%  Similarity=-0.059  Sum_probs=44.8

Q ss_pred             ccEEEEEEcCC-CcEEEEEeCC-CeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceE
Q psy8803          28 HQVLHVSFSHN-GRYFATCSKD-GYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEI  105 (111)
Q Consensus        28 ~~v~~i~~s~~-~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i  105 (111)
                      .....++++|. +.++.+-... +.|...++........   + .......+.++++|++..|..+-       ...+.|
T Consensus       159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~---~-~~~~~~PnGla~d~~~~~lY~aD-------~~~~~I  227 (349)
T 3v64_C          159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII---A-DTHLFWPNGLTIDYAGRRMYWVD-------AKHHVI  227 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES---C-CSSCSCEEEEEEETTTTEEEEEE-------TTTTEE
T ss_pred             CCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE---E-ECCCCCcceEEEeCCCCEEEEEE-------CCCCEE
Confidence            45688999985 5566665555 7888888765432221   0 01123457889998777776664       445567


Q ss_pred             EEeec
Q psy8803         106 AVFSL  110 (111)
Q Consensus       106 ~iw~~  110 (111)
                      ..+|+
T Consensus       228 ~~~~~  232 (349)
T 3v64_C          228 ERANL  232 (349)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            76664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.84  E-value=0.75  Score=29.24  Aligned_cols=69  Identities=7%  Similarity=0.149  Sum_probs=43.5

Q ss_pred             ccEEEEEEcCCCcEEEEEeC-----------------CCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEE
Q psy8803          28 HQVLHVSFSHNGRYFATCSK-----------------DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLV   90 (111)
Q Consensus        28 ~~v~~i~~s~~~~~l~s~~~-----------------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   90 (111)
                      .....+...++|+.+++...                 .+.+.-++.  .....    + .-.....+.++|+|++..+.+
T Consensus       165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~----~-~~~l~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRV----V-AEGFDFANGINISPDGKYVYI  237 (355)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEE----E-EEEESSEEEEEECTTSSEEEE
T ss_pred             CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEE----e-ecCCcccCcceECCCCCEEEE
Confidence            45788899999988877541                 133333333  21111    1 111245689999999998888


Q ss_pred             eccccCCccccCceEEEeec
Q psy8803          91 SGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        91 ~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +-       +..+.|..|++
T Consensus       238 ad-------t~~~~I~~~~~  250 (355)
T 3sre_A          238 AE-------LLAHKIHVYEK  250 (355)
T ss_dssp             EE-------GGGTEEEEEEE
T ss_pred             Ee-------CCCCeEEEEEE
Confidence            76       56677888875

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=93.73  E-value=0.64  Score=28.11  Aligned_cols=51  Identities=8%  Similarity=-0.025  Sum_probs=32.6

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP   59 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~   59 (111)
                      ..++.+..+|.. ++.+..+......+..+...+++.+++..   +.+..+| .++
T Consensus       154 t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g  204 (330)
T 3hxj_A          154 SNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDG  204 (330)
T ss_dssp             CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTS
T ss_pred             cCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCC
Confidence            345777777777 66555555444556666677777766555   6677887 443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=93.53  E-value=0.53  Score=32.69  Aligned_cols=58  Identities=14%  Similarity=0.014  Sum_probs=37.8

Q ss_pred             cEEEEEEc-CCCcEEEEEe-CC----CeEEEEecCCC-ceeeeecceeeeecCceeeEEEccCCCEEEEec
Q psy8803          29 QVLHVSFS-HNGRYFATCS-KD----GYILVWTSSYP-SKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        29 ~v~~i~~s-~~~~~l~s~~-~d----~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   92 (111)
                      .+....|| |||+.|+-.. .+    ..|+++|+.++ .....  .+...    ...++|+|++..++.+.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~----~~~~~WspDg~~l~y~~  239 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGT----NGEIVWGPDHTSLFYVT  239 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEE----CSCCEECSSTTEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCc----eeeEEEecCCCEEEEEE
Confidence            57788999 9999877543 22    35999999887 53211  11111    23567899988877765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=93.36  E-value=0.81  Score=28.15  Aligned_cols=72  Identities=10%  Similarity=-0.093  Sum_probs=43.3

Q ss_pred             ccEEEEEEcCC-CcEEEEEeCC-CeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceE
Q psy8803          28 HQVLHVSFSHN-GRYFATCSKD-GYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEI  105 (111)
Q Consensus        28 ~~v~~i~~s~~-~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i  105 (111)
                      .....++++|. +.++.+-... +.|...++........    ........+.+++++++..+..+-       ...+.|
T Consensus       120 ~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~----~~~~~~~P~gla~d~~~~~lY~~D-------~~~~~I  188 (316)
T 1ijq_A          120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----VTENIQWPNGITLDLLSGRLYWVD-------SKLHSI  188 (316)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE----ECSSCSCEEEEEEETTTTEEEEEE-------TTTTEE
T ss_pred             CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE----EECCCCCceEEEEeccCCEEEEEE-------CCCCeE
Confidence            45678899985 5555554333 6788887764332211    001123467888998877776654       445567


Q ss_pred             EEeec
Q psy8803         106 AVFSL  110 (111)
Q Consensus       106 ~iw~~  110 (111)
                      ..+|+
T Consensus       189 ~~~d~  193 (316)
T 1ijq_A          189 SSIDV  193 (316)
T ss_dssp             EEEET
T ss_pred             EEEec
Confidence            77664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=93.01  E-value=0.47  Score=32.81  Aligned_cols=71  Identities=10%  Similarity=-0.096  Sum_probs=38.8

Q ss_pred             cEEEEEEcCC-CcEEEEEeC-CCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEE
Q psy8803          29 QVLHVSFSHN-GRYFATCSK-DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIA  106 (111)
Q Consensus        29 ~v~~i~~s~~-~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~  106 (111)
                      ....++++|+ +.++++-.. .+.|...++........    ........+.++++|++..|+++-       ...+.|.
T Consensus       497 ~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l----~~~~l~~PnGlavd~~~~~LY~aD-------~~~~~I~  565 (699)
T 1n7d_A          497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----VTENIQWPNGITLDLLSGRLYWVD-------SKLHSIS  565 (699)
T ss_dssp             CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE----SCSSCSSCCCEEECTTTCCEEEEE-------TTTTEEE
T ss_pred             CcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE----EeCCCCCccEEEEeccCCEEEEEe-------cCCCeEE
Confidence            4567788885 455554422 26777776654222110    001123456788888776666654       4455676


Q ss_pred             Eeec
Q psy8803         107 VFSL  110 (111)
Q Consensus       107 iw~~  110 (111)
                      .+++
T Consensus       566 ~~d~  569 (699)
T 1n7d_A          566 SIDV  569 (699)
T ss_dssp             EECS
T ss_pred             EEcc
Confidence            6654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=92.90  E-value=0.61  Score=31.42  Aligned_cols=58  Identities=10%  Similarity=-0.078  Sum_probs=39.7

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      .+|.+..+|..+++.+-++... ..+....+...+..+..++.|+.++.+|.++++..-
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw  499 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence            4588999999999877666422 222222223345566668899999999999887654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=92.45  E-value=1.1  Score=27.85  Aligned_cols=58  Identities=7%  Similarity=-0.131  Sum_probs=35.5

Q ss_pred             cccCeeeecCCCCceeeeeeecc-cccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQH-THQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      ..++.+..+|..+++.+...... ...+.....  .+..+..++.++.+.++|.++++...
T Consensus       284 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~  342 (376)
T 3q7m_A          284 DQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA  342 (376)
T ss_dssp             ETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence            34667777888777765544311 111122222  24567777788999999998876543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=92.07  E-value=1.5  Score=28.49  Aligned_cols=71  Identities=10%  Similarity=-0.001  Sum_probs=44.1

Q ss_pred             EEEEEEcC-CCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEe
Q psy8803          30 VLHVSFSH-NGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVF  108 (111)
Q Consensus        30 v~~i~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw  108 (111)
                      ...++++| ++.++++-..++.|..++..++............  .....++++|++..|+++-       ...+.|..+
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~--~~~~~ia~dpdG~~LYvad-------~~~~~I~~~  300 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK--GSNFHIVWHPTGDWAYIIY-------NGKHCIYRV  300 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC--SSCEEEEECTTSSEEEEEE-------TTTTEEEEE
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC--CCcccEEEeCCCCEEEEEe-------CCCCEEEEE
Confidence            35577888 6888777777788999988755431110001111  1123589999998776665       455667776


Q ss_pred             e
Q psy8803         109 S  109 (111)
Q Consensus       109 ~  109 (111)
                      +
T Consensus       301 ~  301 (433)
T 4hw6_A          301 D  301 (433)
T ss_dssp             E
T ss_pred             e
Confidence            5

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=91.90  E-value=1.5  Score=30.54  Aligned_cols=92  Identities=7%  Similarity=0.035  Sum_probs=51.4

Q ss_pred             CeeeecCCCCc-eeee-eeecccccEEEEEEcCCCcEEEEEeCC-----CeEEEEecCCCce---eeeecceeeeecCce
Q psy8803           7 EYKRLDYHTPI-VETE-VLTQHTHQVLHVSFSHNGRYFATCSKD-----GYILVWTSSYPSK---VKYSHDMKTFSWKYT   76 (111)
Q Consensus         7 ~~i~iw~~~~~-~~~~-~~~~~~~~v~~i~~s~~~~~l~s~~~d-----~~i~iw~~~~~~~---~~~~~~~~~~~~~~~   76 (111)
                      .+|.++|+.++ +.+. .+.   .....+.|+||++.|+-...+     ..|..+++.+...   ......-    -...
T Consensus       201 ~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~----~~~~  273 (751)
T 2xe4_A          201 YTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHN----PLFS  273 (751)
T ss_dssp             EEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCC----TTCE
T ss_pred             EEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCC----CceE
Confidence            35888888877 5321 111   123467899999877666544     2566777765421   1110000    0112


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ..+.++|++..|+.+...     .....|.++|+
T Consensus       274 ~~~~~SpDg~~l~~~~~~-----~~~~~l~~~d~  302 (751)
T 2xe4_A          274 AFMYKAADTNTLCIGSQS-----PETAEVHLLDL  302 (751)
T ss_dssp             EEEEECTTSSEEEEEEEC-----SSCEEEEEEES
T ss_pred             EEEEECCCCCEEEEEecC-----CCCceEEEEEC
Confidence            356789999988776521     12455766665

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.79  E-value=2.7  Score=30.32  Aligned_cols=35  Identities=17%  Similarity=0.072  Sum_probs=29.7

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803          29 QVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus        29 ~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      .+.++...++..++++-+.|+++++|++.++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~  271 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE  271 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEe
Confidence            56677777888899999999999999999887655

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=91.67  E-value=1.6  Score=27.41  Aligned_cols=62  Identities=6%  Similarity=-0.025  Sum_probs=37.1

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-eecceeeeecCceeeEEEccC---CCEEEEec
Q psy8803          28 HQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-YSHDMKTFSWKYTQYSQFNES---DTLLLVSG   92 (111)
Q Consensus        28 ~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~   92 (111)
                      ..-..++|.|+|+++++- .++.|.+++  ...... ....+..........++++|+   +..+.++.
T Consensus        31 ~~P~~ia~~pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~   96 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR   96 (352)
T ss_dssp             SCEEEEEECTTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCceEEEEcCCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence            356799999999977665 458999888  332211 111111111234678899998   55655544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=91.04  E-value=2.6  Score=28.73  Aligned_cols=52  Identities=17%  Similarity=0.107  Sum_probs=34.4

Q ss_pred             eeeecCCCCce--eeeee-ecccccEEEEEEcCCCcEEEEEeC-CCeEEEEecCCC
Q psy8803           8 YKRLDYHTPIV--ETEVL-TQHTHQVLHVSFSHNGRYFATCSK-DGYILVWTSSYP   59 (111)
Q Consensus         8 ~i~iw~~~~~~--~~~~~-~~~~~~v~~i~~s~~~~~l~s~~~-d~~i~iw~~~~~   59 (111)
                      .+.+||..+++  .+..+ ..+......+++..++++++.|+. +..+.+||..+.
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~  275 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD  275 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC
Confidence            57788887663  22222 223334445677889999999984 457999998764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=90.82  E-value=1.7  Score=26.22  Aligned_cols=52  Identities=12%  Similarity=0.032  Sum_probs=36.3

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecC
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSS   57 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~   57 (111)
                      ..++.+..+|.. ++...........+..+...+++.+++ ++.++.+..+|..
T Consensus       114 t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~v-gt~~~~l~~~d~~  165 (330)
T 3hxj_A          114 SMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYV-GSNDNYLYAINPD  165 (330)
T ss_dssp             CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEE-ECTTSEEEEECTT
T ss_pred             ecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEE-EcCCCEEEEECCC
Confidence            457788888888 766655554555556666777777554 5567889999887

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=90.69  E-value=3.3  Score=29.31  Aligned_cols=78  Identities=9%  Similarity=-0.007  Sum_probs=41.3

Q ss_pred             ccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCce
Q psy8803          26 HTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGE  104 (111)
Q Consensus        26 ~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  104 (111)
                      ....+..++|++. +.++.+-...+.|+.+++...........+..........+++.+.+..|+.+-       ...+.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD-------~~~~~  494 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-------SVLGT  494 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEE-------TTTTE
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEe-------cCCCe
Confidence            3456788999884 566666666778888887642110000011111123345677777666666654       44555


Q ss_pred             EEEeec
Q psy8803         105 IAVFSL  110 (111)
Q Consensus       105 i~iw~~  110 (111)
                      |.+.++
T Consensus       495 I~v~~l  500 (791)
T 3m0c_C          495 VSVADT  500 (791)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            666554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=90.37  E-value=2.1  Score=26.52  Aligned_cols=94  Identities=14%  Similarity=0.021  Sum_probs=50.5

Q ss_pred             CeeeecCCCCce-eeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           7 EYKRLDYHTPIV-ETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         7 ~~i~iw~~~~~~-~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      ..|+..++.... ....+.........+.|++. +.++.+-...+.|..+++.......   .+..........+++.+.
T Consensus        13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~---~~~~~~l~~p~glavd~~   89 (318)
T 3sov_A           13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ---NVVVSGLLSPDGLACDWL   89 (318)
T ss_dssp             EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC---EEEEECCSCCCEEEEETT
T ss_pred             CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE---EEEcCCCCCccEEEEEcC
Confidence            456666666442 11111222346678999985 6677776677889999887642111   011111123445677765


Q ss_pred             CCEEEEeccccCCccccCceEEEeec
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +..++.+-       ...+.|.+.++
T Consensus        90 ~g~ly~~d-------~~~~~I~~~~~  108 (318)
T 3sov_A           90 GEKLYWTD-------SETNRIEVSNL  108 (318)
T ss_dssp             TTEEEEEE-------TTTTEEEEEET
T ss_pred             CCeEEEEE-------CCCCEEEEEEC
Confidence            55555543       33455666554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=89.70  E-value=2.3  Score=26.09  Aligned_cols=92  Identities=10%  Similarity=-0.040  Sum_probs=50.6

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCC----ceeeeecceeeeecCceeeEEE
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYP----SKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      ..|+..|+...+....+. .......+.|+++ +.++.+-..++.|..+++...    ....    +..........+++
T Consensus        10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~----~~~~~~~~p~glav   84 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT----VISRDIQAPDGLAV   84 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE----EECSSCSCCCEEEE
T ss_pred             CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE----EEeCCCCCcCEEEE
Confidence            456777777654433332 3456789999986 556666667789999988751    1111    10001123356777


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .+.+..+..+-       ...+.|.+.++
T Consensus        85 d~~~~~ly~~d-------~~~~~I~~~~~  106 (316)
T 1ijq_A           85 DWIHSNIYWTD-------SVLGTVSVADT  106 (316)
T ss_dssp             ETTTTEEEEEE-------TTTTEEEEEET
T ss_pred             eecCCeEEEEE-------CCCCEEEEEeC
Confidence            76555555543       33455666553

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=89.68  E-value=2.7  Score=26.86  Aligned_cols=51  Identities=12%  Similarity=-0.059  Sum_probs=30.0

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCC
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSY   58 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~   58 (111)
                      ..|+..++....... +......+..++|++. +.++.+-...+.|..+++..
T Consensus        92 ~~I~~i~l~~~~~~~-~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g  143 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR  143 (400)
T ss_dssp             TEEEEECTTSCSCEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             ceeEEEccCCcceeE-eccccCcceEEeeeeccCceEEEecCCCeEEEEEccc
Confidence            345555555333222 2224467789999985 55666656678888888764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=89.55  E-value=2.6  Score=26.38  Aligned_cols=60  Identities=8%  Similarity=-0.081  Sum_probs=36.7

Q ss_pred             cEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEec
Q psy8803          29 QVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        29 ~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   92 (111)
                      ....+++++. ++++.+-...+.|.+.++.........    .......+.+++.|.+..++.+-
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~----~~~l~~P~~iavdp~~g~ly~td  177 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL----WQSLEKPRAIALHPMEGTIYWTD  177 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----CTTCSCEEEEEEETTTTEEEEEE
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE----eCCCCCcceEEEecCcCeEEEec
Confidence            3456788874 566666666778888888754322110    01113456788888777776654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=89.38  E-value=3.9  Score=28.24  Aligned_cols=58  Identities=9%  Similarity=-0.071  Sum_probs=41.1

Q ss_pred             ccCeeeecCCCCceeeeeeecc--c-----------------------------ccEEEEEEcCCCcEEEEEeCCC----
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQH--T-----------------------------HQVLHVSFSHNGRYFATCSKDG----   49 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~--~-----------------------------~~v~~i~~s~~~~~l~s~~~d~----   49 (111)
                      .++.+.-+|..+|+.+-.+...  .                             ..-..+.++|+..++..+..++    
T Consensus       181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~  260 (689)
T 1yiq_A          181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD  260 (689)
T ss_dssp             CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence            4789999999999887665410  0                             0112567888888877777665    


Q ss_pred             ---------------eEEEEecCCCcee
Q psy8803          50 ---------------YILVWTSSYPSKV   62 (111)
Q Consensus        50 ---------------~i~iw~~~~~~~~   62 (111)
                                     .+..+|.++++..
T Consensus       261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~  288 (689)
T 1yiq_A          261 PKWRSQAKGDNLFLSSIVAVNADTGEYV  288 (689)
T ss_dssp             HHHHHTTCSCCTTTTEEEEEETTTCCEE
T ss_pred             cCCCCCCCCCceeeeeEEEEEccCCcee
Confidence                           3899999987654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=88.89  E-value=2.6  Score=25.57  Aligned_cols=67  Identities=13%  Similarity=0.106  Sum_probs=43.3

Q ss_pred             ceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEE
Q psy8803          17 IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLV   90 (111)
Q Consensus        17 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   90 (111)
                      .+.+..+.. ......++|+++++++++-..++.|..+|.........     ... .....+++.+++..+++
T Consensus        22 ~~~~~~~p~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~-----~~~-~~p~gia~~~dG~l~va   88 (306)
T 2p4o_A           22 AKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA-----TVE-GKVSGLAFTSNGDLVAT   88 (306)
T ss_dssp             EEEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE-----ECS-SEEEEEEECTTSCEEEE
T ss_pred             ceEeEeCCC-CCCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEE-----eCC-CCceeEEEcCCCcEEEE
Confidence            344445532 24677899999999888877888999998875432211     111 23567888888875444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=88.82  E-value=3.4  Score=26.75  Aligned_cols=92  Identities=11%  Similarity=0.096  Sum_probs=46.4

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCc-EEEEEeCCC----eEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR-YFATCSKDG----YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +.|+.+|...+... .+.........++|+++++ ++++-..++    .+...+.........  .+.  .......+++
T Consensus       159 ~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~--~l~--~~~~p~giav  233 (430)
T 3tc9_A          159 HPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVIT--ELT--KGQNCNGAET  233 (430)
T ss_dssp             EEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEE--EEE--ECSSCCCEEE
T ss_pred             CcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeee--eec--cCCCceEEEE
Confidence            45666676654432 3333445678999999998 444443222    233333322111000  011  1234567888


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +|++..++++-       ...+.|..++.
T Consensus       234 dp~~g~lyv~d-------~~~~~V~~~~~  255 (430)
T 3tc9_A          234 HPINGELYFNS-------WNAGQVFRYDF  255 (430)
T ss_dssp             CTTTCCEEEEE-------TTTTEEEEEET
T ss_pred             eCCCCEEEEEE-------CCCCEEEEEEC
Confidence            88444454543       33455666654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=88.78  E-value=2.9  Score=25.89  Aligned_cols=73  Identities=11%  Similarity=-0.044  Sum_probs=44.0

Q ss_pred             cccEEEEEEcCC-CcEEEEE-eCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCce
Q psy8803          27 THQVLHVSFSHN-GRYFATC-SKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGE  104 (111)
Q Consensus        27 ~~~v~~i~~s~~-~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  104 (111)
                      ......++++|. +.++.+- +..+.|...++.........    .......+.++++|++..|..+-       ...+.
T Consensus       121 ~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~----~~~l~~Pnglavd~~~~~lY~aD-------~~~~~  189 (318)
T 3sov_A          121 LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII----NSEIYWPNGLTLDYEEQKLYWAD-------AKLNF  189 (318)
T ss_dssp             CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE----CSSCSCEEEEEEETTTTEEEEEE-------TTTTE
T ss_pred             CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE----ECCCCCccEEEEeccCCEEEEEE-------CCCCE
Confidence            345678899986 5555554 34578888887653322110    01123457889998777776654       44566


Q ss_pred             EEEeec
Q psy8803         105 IAVFSL  110 (111)
Q Consensus       105 i~iw~~  110 (111)
                      |..+|+
T Consensus       190 I~~~d~  195 (318)
T 3sov_A          190 IHKSNL  195 (318)
T ss_dssp             EEEEET
T ss_pred             EEEEcC
Confidence            777664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=88.75  E-value=4.9  Score=28.48  Aligned_cols=93  Identities=8%  Similarity=-0.071  Sum_probs=50.1

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEe-CCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCS-KDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      +.|.+.++........+.........|+++|. +.++.+-. ....|...++........    ........+.+++.+.
T Consensus       493 ~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l----v~~~l~~P~GLavD~~  568 (791)
T 3m0c_C          493 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----VTENIQWPNGITLDLL  568 (791)
T ss_dssp             TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE----ECSSCSCEEEEEEETT
T ss_pred             CeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE----EeCCCCCceEEEEecC
Confidence            44555555422222222223345788999986 55665543 336788888875433221    1111234567888877


Q ss_pred             CCEEEEeccccCCccccCceEEEeec
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ...|+.+-       ...+.|...++
T Consensus       569 ~~~LYwaD-------~~~~~I~~~d~  587 (791)
T 3m0c_C          569 SGRLYWVD-------SKLHSISSIDV  587 (791)
T ss_dssp             TTEEEEEE-------TTTTEEEEEET
T ss_pred             CCeEEEEe-------CCCCcEEEEec
Confidence            77766654       33455666554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.66  E-value=4.5  Score=27.92  Aligned_cols=93  Identities=5%  Similarity=-0.037  Sum_probs=54.6

Q ss_pred             eeeecCCCC----ceeeeeeecccccEEEEEEcCCCcEEEEEe-CCCeEEEEecCCC------ceeeee----cceeeee
Q psy8803           8 YKRLDYHTP----IVETEVLTQHTHQVLHVSFSHNGRYFATCS-KDGYILVWTSSYP------SKVKYS----HDMKTFS   72 (111)
Q Consensus         8 ~i~iw~~~~----~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~~------~~~~~~----~~~~~~~   72 (111)
                      .+.+-|.+.    +..+..+-.-....-.+..+|||++++.++ .+.++.++|++..      ......    ..+. +.
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~G  377 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LG  377 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CC
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CC
Confidence            356666654    322222222233345678999998877665 6788999998741      111100    0111 11


Q ss_pred             cCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          73 WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                       -.....+|.+++ ...++-       --|++|.-||+
T Consensus       378 -lGPlHt~Fd~~G-~aYTtl-------fidSqvvkWni  406 (638)
T 3sbq_A          378 -LGPLHTTFDGRG-NAYTTL-------FIDSQVVKWNM  406 (638)
T ss_dssp             -SCEEEEEECSSS-EEEEEE-------TTTTEEEEEEH
T ss_pred             -CcccEEEECCCC-ceEeee-------eecceEEEEec
Confidence             234577899888 555655       67889999986

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=88.57  E-value=2.6  Score=25.31  Aligned_cols=60  Identities=15%  Similarity=0.198  Sum_probs=38.4

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee---eecceeeeecCceeeEEEccCCCEEEE
Q psy8803          29 QVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK---YSHDMKTFSWKYTQYSQFNESDTLLLV   90 (111)
Q Consensus        29 ~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~   90 (111)
                      .+..++|+|++.+.+.  .++.+.-.+..+.....   ....+-...|.....+.|.|++...++
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav  104 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV  104 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe
Confidence            6679999999998888  56776666654321111   111233335555668889988887766

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=88.52  E-value=3.5  Score=28.15  Aligned_cols=84  Identities=8%  Similarity=-0.141  Sum_probs=49.0

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      .+|.+.-||..+++.+-.... ......-.....+.+++.++.|+.++.+|.++++.+-...--...   ....+.+..+
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~---~~~P~~y~~~  526 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA---IGYPMTYTHK  526 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC---CSCCEEEEET
T ss_pred             CcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc---EeccEEEEeC
Confidence            458899999999887665531 111111112224667777899999999999998766421110001   1123455557


Q ss_pred             CCEEEEec
Q psy8803          85 DTLLLVSG   92 (111)
Q Consensus        85 ~~~~~~~~   92 (111)
                      +..++++.
T Consensus       527 G~qyv~~~  534 (599)
T 1w6s_A          527 GTQYVAIY  534 (599)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEEE
Confidence            76555544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=88.28  E-value=3.5  Score=26.21  Aligned_cols=80  Identities=11%  Similarity=-0.071  Sum_probs=43.1

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCC
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDT   86 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   86 (111)
                      .|+..++....... +.........++|++. +.++.+-...+.|..+++........    ..........+++.+.+.
T Consensus        97 ~I~~i~~~~~~~~~-~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~----~~~~~~~p~glavd~~~g  171 (386)
T 3v65_B           97 DIRQVLPHRSEYTL-LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV----VSTGLESPGGLAVDWVHD  171 (386)
T ss_dssp             CEEEECTTSCCCEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE----ECSSCSCCCCEEEETTTT
T ss_pred             cceeeccCCCcEEE-EecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE----EeCCCCCccEEEEEeCCC
Confidence            34444554333222 2223345788999975 55666666778898898876543221    000112334567776665


Q ss_pred             EEEEec
Q psy8803          87 LLLVSG   92 (111)
Q Consensus        87 ~~~~~~   92 (111)
                      .|+.+-
T Consensus       172 ~lY~~d  177 (386)
T 3v65_B          172 KLYWTD  177 (386)
T ss_dssp             EEEEEE
T ss_pred             eEEEEc
Confidence            655543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=88.10  E-value=4.5  Score=27.29  Aligned_cols=22  Identities=0%  Similarity=-0.526  Sum_probs=15.8

Q ss_pred             ccccCeeeecCCCCceeeeeee
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLT   24 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~   24 (111)
                      ...+|.+...|..+++.+....
T Consensus       322 ~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          322 IDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEE
T ss_pred             eCCCcEEEEEECCCCCEEeeec
Confidence            3457788888988887765543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=87.85  E-value=3.8  Score=26.20  Aligned_cols=93  Identities=8%  Similarity=-0.055  Sum_probs=51.6

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCC-CcEEEEE-eCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHN-GRYFATC-SKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      +.|.+.+.........+.........++++|. +.++.+- +....|...++.........    .......+.+++++.
T Consensus       181 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~----~~~l~~P~glavd~~  256 (400)
T 3p5b_L          181 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV----TENIQWPNGITLDLL  256 (400)
T ss_dssp             TEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE----CSSCSCEEEEEEETT
T ss_pred             CeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE----ECCCCceEEEEEEeC
Confidence            45555555533222222223345688999985 5555554 33467888887654322210    011234567888887


Q ss_pred             CCEEEEeccccCCccccCceEEEeec
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ...|..+-       ...+.|...|+
T Consensus       257 ~~~lY~aD-------~~~~~I~~~d~  275 (400)
T 3p5b_L          257 SGRLYWVD-------SKLHSISSIDV  275 (400)
T ss_dssp             TTEEEEEE-------TTTTEEEEEET
T ss_pred             CCEEEEEE-------CCCCEEEEEeC
Confidence            77776654       44556766664

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=86.76  E-value=4.4  Score=25.72  Aligned_cols=64  Identities=6%  Similarity=-0.036  Sum_probs=40.3

Q ss_pred             cccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee--eecceeeeecCceeeEEEccC---CCEEEE
Q psy8803          27 THQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK--YSHDMKTFSWKYTQYSQFNES---DTLLLV   90 (111)
Q Consensus        27 ~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~---~~~~~~   90 (111)
                      -..-..|+|.|||+++++--..++|.+++...+....  ....+..........++++|+   +..+.+
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv   99 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA   99 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence            4566899999999988887668899998765543321  111122212234567899885   344444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=85.94  E-value=5  Score=25.64  Aligned_cols=97  Identities=7%  Similarity=0.001  Sum_probs=55.7

Q ss_pred             cccCeeeecCCC-------CceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCC-----Cceeeeecceeee
Q psy8803           4 WYEEYKRLDYHT-------PIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSY-----PSKVKYSHDMKTF   71 (111)
Q Consensus         4 ~~d~~i~iw~~~-------~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~-----~~~~~~~~~~~~~   71 (111)
                      ..+|.+..|++.       +.+.+.+|.- .+.+..+..++....|..+-++.-|-.++.+.     ...+.... ...+
T Consensus       150 ~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l  227 (355)
T 3amr_A          150 GKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHL  227 (355)
T ss_dssp             CSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSB
T ss_pred             CCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCcc
Confidence            445777777772       3355666653 45778888998888888888886655555432     12221100 0000


Q ss_pred             ecCceeeEEE--ccCCC-EEEEeccccCCccccCceEEEeec
Q psy8803          72 SWKYTQYSQF--NESDT-LLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        72 ~~~~~~~v~~--~~~~~-~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      . .-+..++.  .+++. +++++.       ..++...+||.
T Consensus       228 ~-aDvEGLai~~~~~g~gyLivSs-------QG~~s~~Vydr  261 (355)
T 3amr_A          228 T-RDIEGLTIYYAADGKGYLMASS-------QGNSSYAIYDR  261 (355)
T ss_dssp             C-SCEEEEEEEECGGGCEEEEEEE-------GGGTEEEEEES
T ss_pred             c-cCcceEEEEecCCCCEEEEEEc-------CCCCEEEEEEC
Confidence            0 11234444  34444 677776       66778888886

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=85.31  E-value=5.3  Score=25.32  Aligned_cols=89  Identities=10%  Similarity=0.023  Sum_probs=52.7

Q ss_pred             cccccCeeeecCCCCceeee-eeec----c--cccEEEEEE---cCCCcEEEEEe-------------CCCeEEEEecC-
Q psy8803           2 KSWYEEYKRLDYHTPIVETE-VLTQ----H--THQVLHVSF---SHNGRYFATCS-------------KDGYILVWTSS-   57 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~-~~~~----~--~~~v~~i~~---s~~~~~l~s~~-------------~d~~i~iw~~~-   57 (111)
                      ++.+.++|..|+...+.... .+.+    .  ...+..+.|   .|++++++...             .+..+..+|+. 
T Consensus        30 s~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~  109 (334)
T 2p9w_A           30 SNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPL  109 (334)
T ss_dssp             EETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSC
T ss_pred             EeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCc
Confidence            34578999999987543222 3322    1  124689999   68888888644             25789999998 


Q ss_pred             --CCceeeeec--ceeee-------ecCceeeEEEccCCCEEEE
Q psy8803          58 --YPSKVKYSH--DMKTF-------SWKYTQYSQFNESDTLLLV   90 (111)
Q Consensus        58 --~~~~~~~~~--~~~~~-------~~~~~~~v~~~~~~~~~~~   90 (111)
                        +++...+..  .+...       .....+.++..++++.+++
T Consensus       110 ~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt  153 (334)
T 2p9w_A          110 SENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA  153 (334)
T ss_dssp             CTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred             CCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence              554433211  01000       1124567778877776653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=85.12  E-value=6.6  Score=26.28  Aligned_cols=73  Identities=5%  Similarity=-0.032  Sum_probs=43.6

Q ss_pred             EEEEEEcC-CCcEEEEEeCCCeEEEEecC-------CCce-eee-------ecceeeee-cCceeeEEEccCCCEEEEec
Q psy8803          30 VLHVSFSH-NGRYFATCSKDGYILVWTSS-------YPSK-VKY-------SHDMKTFS-WKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        30 v~~i~~s~-~~~~l~s~~~d~~i~iw~~~-------~~~~-~~~-------~~~~~~~~-~~~~~~v~~~~~~~~~~~~~   92 (111)
                      ...++.+| ++.++++-..++.|..+|+.       ++.. ...       ...+.... -.....++|+|++..+.++-
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence            35677899 46777777788899999987       4332 000       00111110 12246799999998665654


Q ss_pred             cccCCccccCceEEEee
Q psy8803          93 VHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        93 ~~~~~~~~~~~~i~iw~  109 (111)
                             ...+.|+.++
T Consensus       329 -------~~~h~I~kid  338 (496)
T 3kya_A          329 -------INNHYFMRSD  338 (496)
T ss_dssp             -------TTTTEEEEEE
T ss_pred             -------CCCCEEEEEe
Confidence                   4456676654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=84.82  E-value=5.2  Score=24.82  Aligned_cols=58  Identities=7%  Similarity=-0.145  Sum_probs=37.0

Q ss_pred             cccCeeeecCCCCceeeeeeecc---------cccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQH---------THQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV   62 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~---------~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~   62 (111)
                      ..++.+..+|..+++.+-.....         ...+... ...++..+..++.++.+..+|.++++..
T Consensus        60 ~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~  126 (376)
T 3q7m_A           60 DRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVA  126 (376)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred             cCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEE
Confidence            45678888999888876555432         1122221 1223555666777899999999887654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=84.80  E-value=4.7  Score=24.26  Aligned_cols=59  Identities=14%  Similarity=0.211  Sum_probs=40.0

Q ss_pred             EEEEEcCCCcEEEEEeCCCeEEEEecCCCceee---eecceeeeecCceeeEEEccCCCEEEEe
Q psy8803          31 LHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK---YSHDMKTFSWKYTQYSQFNESDTLLLVS   91 (111)
Q Consensus        31 ~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~   91 (111)
                      .++.|.|+|.+.++  .|+.|.-++..+.....   ....|-...|..+..+.|.|++...++.
T Consensus        91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A           91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            78899999999988  45888877754321111   1123334456677889999999887764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=83.84  E-value=8.2  Score=26.34  Aligned_cols=71  Identities=10%  Similarity=0.126  Sum_probs=36.8

Q ss_pred             EEEEcC-CCcEEEEEeCCC-----------eEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCcc
Q psy8803          32 HVSFSH-NGRYFATCSKDG-----------YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQ   99 (111)
Q Consensus        32 ~i~~s~-~~~~l~s~~~d~-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   99 (111)
                      ..++.+ ++++++.|+.+.           .+.+||..+..-.... ............+++.+++..+++-|       
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~-~~~~~~~~~~~~~~~~~~g~lyv~GG-------  261 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT-VTVTKHDMFCPGISMDGNGQIVVTGG-------  261 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE-EEECSCCCSSCEEEECTTSCEEEECS-------
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc-ccCCCCCCccccccCCCCCCEEEeCC-------
Confidence            456666 888888887543           5778888764321100 01000001111345555665554433       


Q ss_pred             ccCceEEEeec
Q psy8803         100 STSGEIAVFSL  110 (111)
Q Consensus       100 ~~~~~i~iw~~  110 (111)
                      ..+..+.+||.
T Consensus       262 ~~~~~v~~yd~  272 (656)
T 1k3i_A          262 NDAKKTSLYDS  272 (656)
T ss_dssp             SSTTCEEEEEG
T ss_pred             CCCCceEEecC
Confidence            23446888885

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=82.41  E-value=7.1  Score=24.55  Aligned_cols=63  Identities=13%  Similarity=0.107  Sum_probs=37.1

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC---CCEEEEec
Q psy8803          28 HQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES---DTLLLVSG   92 (111)
Q Consensus        28 ~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~   92 (111)
                      .....++|.|+++++++-. ++.|.+++. .+........+..........++++|+   +..+.++.
T Consensus        29 ~~P~~ia~~pdG~l~V~e~-~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~   94 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTER-PGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA   94 (354)
T ss_dssp             SCEEEEEEEETTEEEEEET-TTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeC-CCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence            4568999999999777654 588988873 333111100111111134567899997   55665544

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=82.21  E-value=4.4  Score=28.55  Aligned_cols=34  Identities=12%  Similarity=0.300  Sum_probs=27.0

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803          28 HQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus        28 ~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      ..|.++.+  +..++++-+.|+++|+|+++++.+..
T Consensus       222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~  255 (729)
T 3f7f_A          222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQ  255 (729)
T ss_dssp             CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred             ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEE
Confidence            34666655  47799999999999999999987554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=81.04  E-value=1.6  Score=32.04  Aligned_cols=34  Identities=18%  Similarity=0.074  Sum_probs=26.8

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803          30 VLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus        30 v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      +.++...++..++++-+.|+++++|++.++.+..
T Consensus       240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~  273 (1139)
T 4fhn_B          240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE  273 (1139)
T ss_dssp             BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEE
T ss_pred             eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEE
Confidence            3445556677899999999999999999876554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=80.65  E-value=2.7  Score=29.12  Aligned_cols=31  Identities=10%  Similarity=0.005  Sum_probs=21.1

Q ss_pred             ccEEEEEEcCCC-cEEEEEeCCCeEEEEecCC
Q psy8803          28 HQVLHVSFSHNG-RYFATCSKDGYILVWTSSY   58 (111)
Q Consensus        28 ~~v~~i~~s~~~-~~l~s~~~d~~i~iw~~~~   58 (111)
                      ..+..++|++++ .++.+-...+.|..+++..
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g  437 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDR  437 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCC
Confidence            456678898864 4555545567888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	111
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.5 bits (93), Expect = 1e-05
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 22  VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
           VL  H ++V  +  + +G   AT S D ++ +W
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.9 bits (81), Expect = 5e-04
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 22  VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF 81
             T H   +  + F  NG  FAT S D    ++     +  +                 F
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFD--LRADQELMTYSHDNIICGITSVSF 278

Query: 82  NESDTLLLVSG 92
           ++S  LLL   
Sbjct: 279 SKSGRLLLAGY 289

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.1 bits (79), Expect = 8e-04
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 22 VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK 63
           L  H  ++  + +  + R   + S+DG +++W S   +KV 
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH 91

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 6e-05
 Identities = 12/62 (19%), Positives = 20/62 (32%)

Query: 17  IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYT 76
            V+   L +H  QV  V ++ +     TC  D    VWT    +       ++       
Sbjct: 41  WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC 100

Query: 77  QY 78
             
Sbjct: 101 VR 102

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 1e-04
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 19 ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
          E   L+ H   V  V F        + S+D  I VW
Sbjct: 9  EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 13/33 (39%)

Query: 22  VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
            L  H H V  + F     Y  T S D  + VW
Sbjct: 284 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.9 bits (76), Expect = 0.002
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 22  VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
            L  H + V  V F   G++  +C+ D  + VW
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 1e-04
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 13  YHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
           + TP   +   ++ +  VL    S + +Y  T S D    V+
Sbjct: 292 WRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (74), Expect = 0.004
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 25  QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSH 66
            H   VL + F++ G++F +  KD  +  W + Y + +  S 
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 304

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 2e-04
 Identities = 14/99 (14%), Positives = 31/99 (31%)

Query: 13  YHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFS 72
                 E E  T H   V  V F+ +G+   + S D  + +W     +    S    + +
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299

Query: 73  WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ 111
            + T     +   ++       +    S    +  +  +
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.2 bits (79), Expect = 9e-04
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 18  VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQ 77
           VE      HT  V  V FS++G Y AT   +    V+  S  S V    D    +     
Sbjct: 53  VELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN 111

Query: 78  YSQFNESDTLLLVSGVHF 95
            +  +   + L +  V F
Sbjct: 112 LNTSSSPSSDLYIRSVCF 129

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.8 bits (83), Expect = 2e-04
 Identities = 7/37 (18%), Positives = 16/37 (43%)

Query: 18  VETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
           V+T  +T+  + +  +  S + +       DG I  +
Sbjct: 305 VKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.1 bits (81), Expect = 3e-04
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
          +V   H   +  +S S +G+   +   +G+I  W
Sbjct: 6  QVRYGHNKAITALSSSADGKTLFSADAEGHINSW 39

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (77), Expect = 0.001
 Identities = 4/34 (11%), Positives = 11/34 (32%)

Query: 21 EVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVW 54
          ++       +  +    +       S DG + V+
Sbjct: 5  QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVY 38

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 34.5 bits (77), Expect = 0.001
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 19  ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY 78
           +TE+ T+H+HQ      S +G Y A+    G + +W ++  + +  +             
Sbjct: 50  DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDIS 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.81
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.81
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.78
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.76
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.74
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.74
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.74
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.73
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.72
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.71
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.7
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.67
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.66
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.65
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.65
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.65
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.64
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.64
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.61
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.61
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.6
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.6
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.57
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.57
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.55
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.55
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.53
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.51
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.5
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.45
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.43
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.42
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.39
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.34
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.29
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.29
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.22
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.16
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.85
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.8
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.71
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.65
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.62
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.57
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.4
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.32
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.29
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.54
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.5
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.35
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.22
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.03
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.02
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.88
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.78
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.76
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.62
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.25
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	96.11
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.94
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	95.69
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	95.24
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	95.14
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.48
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	93.11
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	92.22
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	91.28
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	90.75
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	89.53
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	85.09
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	83.9
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.28
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	82.99
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	82.6
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	81.02

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=2e-19  Score=112.32  Aligned_cols=102  Identities=12%  Similarity=0.221  Sum_probs=78.1

Q ss_pred             CcccccCeeeecCCCCceeeeee------ecccccEEEEEEcCCCcEEEEEeCCC---eEEEEecCCCceeeeec-----
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVL------TQHTHQVLHVSFSHNGRYFATCSKDG---YILVWTSSYPSKVKYSH-----   66 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~------~~~~~~v~~i~~s~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~-----   66 (111)
                      |+++.|++|++||+.+++++..+      .+|...|.+++|+|++++|++++.|+   .+++||++.+.......     
T Consensus       199 asgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~  278 (393)
T d1sq9a_         199 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS  278 (393)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred             EEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccccc
Confidence            46788999999999988766544      46889999999999999999999886   48999998765443110     


Q ss_pred             -----ceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          67 -----DMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        67 -----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                           ....+ -..+++++|+|++..+ +++       +.|++|++||++
T Consensus       279 ~~~~~~~~gH-~~~V~~l~fspd~~~l-~S~-------s~D~~v~vWd~~  319 (393)
T d1sq9a_         279 SQASLGEFAH-SSWVMSLSFNDSGETL-CSA-------GWDGKLRFWDVK  319 (393)
T ss_dssp             -----CCBSB-SSCEEEEEECSSSSEE-EEE-------ETTSEEEEEETT
T ss_pred             ccceeeeecc-cCceeeeccCCCCCee-EEE-------CCCCEEEEEECC
Confidence                 00111 1457889999998776 566       789999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.9e-19  Score=107.57  Aligned_cols=96  Identities=16%  Similarity=0.279  Sum_probs=80.6

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +++.|+.|++||..+++++..+.+|...|.+++|+|++++|++++.|+.|++||+++.+....   .... -.++++++|
T Consensus       222 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~h-~~~V~~~~~  297 (317)
T d1vyhc1         222 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT---LNAH-EHFVTSLDF  297 (317)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE---EECC-SSCEEEEEE
T ss_pred             eccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEE---EcCC-CCCEEEEEE
Confidence            456799999999999999999999999999999999999999999999999999988765541   1111 246778889


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEee
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      +|++..++ ++       +.|+.|+|||
T Consensus       298 s~~~~~l~-s~-------s~Dg~i~iWd  317 (317)
T d1vyhc1         298 HKTAPYVV-TG-------SVDQTVKVWE  317 (317)
T ss_dssp             CSSSSCEE-EE-------ETTSEEEEEC
T ss_pred             cCCCCEEE-EE-------eCCCeEEEeC
Confidence            99888765 55       7899999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.78  E-value=2.2e-18  Score=104.98  Aligned_cols=101  Identities=17%  Similarity=0.185  Sum_probs=81.9

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecc----eeeeecCcee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHD----MKTFSWKYTQ   77 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~----~~~~~~~~~~   77 (111)
                      +++.|++|++||.++++....+.+|...|.++.|+|++++|++++.|+.+++||.+..........    ...+ -.++.
T Consensus       164 sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h-~~~V~  242 (311)
T d1nr0a1         164 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH-SGSVF  242 (311)
T ss_dssp             EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS-SSCEE
T ss_pred             ccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence            567899999999999999999999999999999999999999999999999999987654431110    1111 14577


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +++|+|++.+++ +|       +.|+.|+|||++
T Consensus       243 ~~~~s~~~~~l~-tg-------s~Dg~v~iwd~~  268 (311)
T d1nr0a1         243 GLTWSPDGTKIA-SA-------SADKTIKIWNVA  268 (311)
T ss_dssp             EEEECTTSSEEE-EE-------ETTSEEEEEETT
T ss_pred             ccccCCCCCEEE-EE-------eCCCeEEEEECC
Confidence            889999988765 45       679999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=6.8e-18  Score=102.08  Aligned_cols=100  Identities=18%  Similarity=0.110  Sum_probs=81.6

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      ++..|+.+++||+++++++..+.+|.+.|.+++|+|++++|++++.|+.+++|+++...........  ....++..++|
T Consensus       201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~--~~~~~i~~~~~  278 (340)
T d1tbga_         201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--NIICGITSVSF  278 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT--TCCSCEEEEEE
T ss_pred             EeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccc--cccCceEEEEE
Confidence            4678999999999999999999999999999999999999999999999999999876654321111  11135678899


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|++..++ +|       +.|+.|++||++
T Consensus       279 s~~~~~l~-~g-------~~dg~i~iwd~~  300 (340)
T d1tbga_         279 SKSGRLLL-AG-------YDDFNCNVWDAL  300 (340)
T ss_dssp             CSSSCEEE-EE-------ETTSCEEEEETT
T ss_pred             CCCCCEEE-EE-------ECCCEEEEEECC
Confidence            99887764 45       679999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=1.9e-17  Score=100.81  Aligned_cols=55  Identities=22%  Similarity=0.315  Sum_probs=50.4

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCC
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYP   59 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~   59 (111)
                      .++.+.+||+.+.+....+.+|...|.+++|+|++++|++|+.|+.|++||+...
T Consensus        36 ~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          36 NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred             eCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecc
Confidence            3567999999988888888999999999999999999999999999999999764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=8.1e-18  Score=104.27  Aligned_cols=100  Identities=16%  Similarity=0.160  Sum_probs=77.7

Q ss_pred             CcccccCeeeecCCCCce--eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           1 KKSWYEEYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      |+++.|+.|+|||...++  .+..+++|.+.|.+++|+|++++|++++.|+.+++||++........ ..... -.++.+
T Consensus        23 a~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~-~~~v~~  100 (371)
T d1k8kc_          23 AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL-VILRI-NRAARC  100 (371)
T ss_dssp             EEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE-ECCCC-SSCEEE
T ss_pred             EEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccc-ccccc-cccccc
Confidence            457789999999997664  67778899999999999999999999999999999999865433210 01111 145678


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++|+|++..+++ +       +.++.|++|++
T Consensus       101 i~~~p~~~~l~~-~-------s~d~~i~i~~~  124 (371)
T d1k8kc_         101 VRWAPNEKKFAV-G-------SGSRVISICYF  124 (371)
T ss_dssp             EEECTTSSEEEE-E-------ETTSSEEEEEE
T ss_pred             ccccccccccee-e-------cccCcceeeee
Confidence            889999887654 4       67899999975

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.2e-17  Score=101.02  Aligned_cols=95  Identities=17%  Similarity=0.247  Sum_probs=77.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +++.|+.+++||+..++.. ....|...|.+++|+|++++|++++.|+.|++||...........    . -.++..++|
T Consensus       241 ~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~-~~~v~~~~~  314 (337)
T d1gxra_         241 VGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----E-SSSVLSCDI  314 (337)
T ss_dssp             EEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----C-SSCEEEEEE
T ss_pred             eeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc----C-CCCEEEEEE
Confidence            5678999999999977755 456799999999999999999999999999999998876654211    1 145667889


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +|++.+++ ++       +.|+.|+|||+
T Consensus       315 s~d~~~l~-t~-------s~D~~I~vWdl  335 (337)
T d1gxra_         315 SVDDKYIV-TG-------SGDKKATVYEV  335 (337)
T ss_dssp             CTTSCEEE-EE-------ETTSCEEEEEE
T ss_pred             eCCCCEEE-EE-------eCCCeEEEEEE
Confidence            99888764 45       78999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=2.3e-17  Score=99.72  Aligned_cols=97  Identities=14%  Similarity=0.106  Sum_probs=77.5

Q ss_pred             CcccccCeeeecCCCCceeeeeee--cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLT--QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      ++++.|+.+++|++........+.  .+...+.+++|+|++++|++++.|+.|++||+........   ...+ -.++++
T Consensus       242 ~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~---~~~H-~~~V~~  317 (340)
T d1tbga_         242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV---LAGH-DNRVSC  317 (340)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEE---ECCC-SSCEEE
T ss_pred             EEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEE---EcCC-CCCEEE
Confidence            356789999999999887766553  5667899999999999999999999999999988766541   1111 246778


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      ++|+|++..+ ++|       +.|+.|+|||
T Consensus       318 l~~s~d~~~l-~s~-------s~Dg~v~iWd  340 (340)
T d1tbga_         318 LGVTDDGMAV-ATG-------SWDSFLKIWN  340 (340)
T ss_dssp             EEECTTSSCE-EEE-------ETTSCEEEEC
T ss_pred             EEEeCCCCEE-EEE-------ccCCEEEEeC
Confidence            8899988876 455       7899999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.3e-17  Score=102.86  Aligned_cols=100  Identities=15%  Similarity=0.176  Sum_probs=74.0

Q ss_pred             cccccCeeeecCCCCce------------eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee----ee
Q psy8803           2 KSWYEEYKRLDYHTPIV------------ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK----YS   65 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~------------~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~   65 (111)
                      +++.|+.+++||+..+.            .......|...|.+++|+|++++|++++.|+.|++||+++++...    |.
T Consensus       271 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~  350 (388)
T d1erja_         271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR  350 (388)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCC
Confidence            56789999999997542            234455688999999999999999999999999999999876554    44


Q ss_pred             cceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          66 HDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        66 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..+.++.+.  ...+|+|++..+ ++|       +.|+.|+|||++
T Consensus       351 ~~V~~~~~~--~~~~~spd~~~l-~s~-------s~Dg~I~iW~~~  386 (388)
T d1erja_         351 NSVISVAVA--NGSSLGPEYNVF-ATG-------SGDCKARIWKYK  386 (388)
T ss_dssp             SCEEEEEEC--SSCTTCTTCEEE-EEE-------ETTSEEEEEEEE
T ss_pred             CCEEEEEEe--cCcccCCCCCEE-EEE-------eCCCEEEEEeee
Confidence            555544332  233466676555 566       789999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.3e-16  Score=96.46  Aligned_cols=100  Identities=14%  Similarity=0.088  Sum_probs=75.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      |+++.||+|++||+.+++++..+++|.+.|.+++|+|+ ..|++++.|+.+++|+................  .......
T Consensus        27 ~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~  103 (355)
T d1nexb2          27 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNST--VRCLDIV  103 (355)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSC--EEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccc--ccccccc
Confidence            46789999999999999999999999999999999985 57999999999999999886654421111100  1122344


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.++... ++++       +.|+.|++||++
T Consensus       104 ~~~~~~~-~~~~-------~~d~~i~iw~~~  126 (355)
T d1nexb2         104 EYKNIKY-IVTG-------SRDNTLHVWKLP  126 (355)
T ss_dssp             EETTEEE-EEEE-------ETTSEEEEEECC
T ss_pred             cccccce-eeee-------cCCCcEEEEEcc
Confidence            5555544 4555       789999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.70  E-value=7.4e-17  Score=96.73  Aligned_cols=101  Identities=11%  Similarity=0.176  Sum_probs=77.7

Q ss_pred             cccccCeeeecCCCCceeee-eeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETE-VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++..|+.+++||+..++... ....|...|.+++|+|++++|++++.|+.+++||+.......+....... -.++++++
T Consensus       153 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h-~~~v~~l~  231 (299)
T d1nr0a2         153 VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAKVACVS  231 (299)
T ss_dssp             EEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-SSCEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            56789999999998765433 34568999999999999999999999999999999876544322222211 14677889


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..++ +|       +.|+.|++||++
T Consensus       232 ~s~~~~~l~-sg-------s~dg~i~iwd~~  254 (299)
T d1nr0a2         232 WSPDNVRLA-TG-------SLDNSVIVWNMN  254 (299)
T ss_dssp             ECTTSSEEE-EE-------ETTSCEEEEETT
T ss_pred             ccccccceE-EE-------cCCCEEEEEECC
Confidence            999888764 45       689999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=4.3e-17  Score=99.55  Aligned_cols=99  Identities=15%  Similarity=0.085  Sum_probs=71.2

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEc---CCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFS---HNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s---~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      +++.|+.|++||.++++.+..+.+|...+..+.|+   |++++|++++.|+.|+|||+++++...... ..... .....
T Consensus       223 s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~-~~~~~-~~~~~  300 (325)
T d1pgua1         223 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT-LDKQQ-LGNQQ  300 (325)
T ss_dssp             EEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCTTC-GGGCE
T ss_pred             ccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE-ecCCc-ccCeE
Confidence            56789999999999999999999888777666655   689999999999999999999877654110 00000 11223


Q ss_pred             EEEccC-CCEEEEeccccCCccccCceEEEeec
Q psy8803          79 SQFNES-DTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        79 v~~~~~-~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +++.+. +..+ +++       +.|+.|+||||
T Consensus       301 ~~~~~~~~~~l-~s~-------s~dg~i~vwdl  325 (325)
T d1pgua1         301 VGVVATGNGRI-ISL-------SLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEEETTEE-EEE-------ETTSCEEEEET
T ss_pred             EEEEECCCCEE-EEE-------ECCCEEEEEEC
Confidence            333333 3344 566       78999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=3.1e-16  Score=97.05  Aligned_cols=102  Identities=15%  Similarity=0.045  Sum_probs=76.0

Q ss_pred             CcccccCeeeecCCCCce--eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           1 KKSWYEEYKRLDYHTPIV--ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      ++++.|++|++||+..+.  ....+.+|...|.+++|+|+++.|++++.|+.+++|++................-..+.+
T Consensus        67 ~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~  146 (371)
T d1k8kc_          67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS  146 (371)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             EEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccc
Confidence            356789999999998664  445567889999999999999999999999999999987643221100111111135667


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++|+|++..+ +++       +.|+.|++||+
T Consensus       147 v~~~p~~~~l-~s~-------s~D~~v~v~~~  170 (371)
T d1k8kc_         147 LDWHPNSVLL-AAG-------SCDFKCRIFSA  170 (371)
T ss_dssp             EEECTTSSEE-EEE-------ETTSCEEEEEC
T ss_pred             ccccccccce-ecc-------ccCcEEEEEee
Confidence            8899988876 555       78999999986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.3e-15  Score=91.95  Aligned_cols=96  Identities=10%  Similarity=0.082  Sum_probs=77.9

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +++.|+.+++||+++++.+..+. |...|.+++|+|+++.|++++.|+.+++||++.........    . -.+++.++|
T Consensus       200 ~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~-~~~i~~v~~  273 (337)
T d1gxra_         200 TGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL----H-ESCVLSLKF  273 (337)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC----C-SSCEEEEEE
T ss_pred             cccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccccccc----c-ccccceEEE
Confidence            45679999999999998877665 88999999999999999999999999999998876543211    1 145667889


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|++..++ ++       +.|+.|++||++
T Consensus       274 s~~g~~l~-s~-------s~Dg~i~iwd~~  295 (337)
T d1gxra_         274 AYCGKWFV-ST-------GKDNLLNAWRTP  295 (337)
T ss_dssp             CTTSSEEE-EE-------ETTSEEEEEETT
T ss_pred             CCCCCEEE-EE-------eCCCeEEEEECC
Confidence            99988765 45       679999999964

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=6.6e-16  Score=92.14  Aligned_cols=97  Identities=13%  Similarity=0.035  Sum_probs=72.1

Q ss_pred             CcccccCeeeecCCCCceeee-eeecccccEEEEEEcCC----------CcEEEEEeCCCeEEEEecCCCc-eeeeecce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETE-VLTQHTHQVLHVSFSHN----------GRYFATCSKDGYILVWTSSYPS-KVKYSHDM   68 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~-~~~~~~~~v~~i~~s~~----------~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~   68 (111)
                      ++++.||.|++||+..++... .+.+|...|.+++|+|.          +.+|++++.|++|++||++... ....    
T Consensus       178 ~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~----  253 (287)
T d1pgua2         178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA----  253 (287)
T ss_dssp             EEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE----
T ss_pred             ccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEE----
Confidence            356789999999999887554 46789999999999874          4689999999999999997633 2221    


Q ss_pred             eeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          69 KTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        69 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ....-..++.++|+|++ .++ ++       +.|+.|++||+
T Consensus       254 ~~~h~~~V~~v~~~~~~-~l~-s~-------g~D~~v~iW~i  286 (287)
T d1pgua2         254 LNAHKDGVNNLLWETPS-TLV-SS-------GADACIKRWNV  286 (287)
T ss_dssp             TTSSTTCEEEEEEEETT-EEE-EE-------ETTSCEEEEEE
T ss_pred             eCCCCCCeEEEEECCCC-EEE-EE-------ECCCeEEEEEE
Confidence            11111456677788875 444 44       67999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=5.4e-16  Score=93.10  Aligned_cols=85  Identities=14%  Similarity=0.133  Sum_probs=65.1

Q ss_pred             eeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCc
Q psy8803          19 ETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTP   98 (111)
Q Consensus        19 ~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   98 (111)
                      .+...++|...|.+++|+|++++|++++.|++|++||++.............. -.++.+++|+|++..++++|      
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h-~~~V~~v~f~~~~~~~l~sg------   75 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY-KHPLLCCNFIDNTDLQIYVG------   75 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC-SSCEEEEEEEESSSEEEEEE------
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCC-CCCEEEEEEeCCCCCEEEEc------
Confidence            45556789999999999999999999999999999999764322210011111 24677889999888888888      


Q ss_pred             cccCceEEEeecC
Q psy8803          99 QSTSGEIAVFSLQ  111 (111)
Q Consensus        99 ~~~~~~i~iw~~~  111 (111)
                       +.|+.|++|+++
T Consensus        76 -~~d~~v~~w~~~   87 (342)
T d1yfqa_          76 -TVQGEILKVDLI   87 (342)
T ss_dssp             -ETTSCEEEECSS
T ss_pred             -ccccceeeeecc
Confidence             889999999864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.64  E-value=7.4e-16  Score=97.01  Aligned_cols=100  Identities=13%  Similarity=0.021  Sum_probs=76.7

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceee--eecCceeeEE
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKT--FSWKYTQYSQ   80 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~v~   80 (111)
                      ...||+|++||..+++.+..+..|. .+..++|+|||+.+++++.|+.+++||+.+.+..... .+..  ........++
T Consensus        38 ~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~-~i~~~~~~~~~~~s~~  115 (426)
T d1hzua2          38 LRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA-EIKIGIEARSVESSKF  115 (426)
T ss_dssp             ETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE-EEECCSEEEEEEECCS
T ss_pred             EcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEE-EEeCCCCCcceEEeee
Confidence            4578999999999999999998764 5899999999999999999999999999876533210 0110  0011223467


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++.++++++       ..++.+++||.+
T Consensus       116 ~spDG~~l~v~~-------~~~~~v~i~d~~  139 (426)
T d1hzua2         116 KGYEDRYTIAGA-------YWPPQFAIMDGE  139 (426)
T ss_dssp             TTCTTTEEEEEE-------EESSEEEEEETT
T ss_pred             ecCCCCEEEEee-------cCCCeEEEEcCC
Confidence            788999988877       778899999863

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.64  E-value=2.3e-15  Score=90.14  Aligned_cols=82  Identities=16%  Similarity=0.138  Sum_probs=65.1

Q ss_pred             ceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccC
Q psy8803          17 IVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFG   96 (111)
Q Consensus        17 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   96 (111)
                      |+....+.||.+.|.+++|+|++++|++|+.|+.|++||+++++....   .....-.++++++|+|++..+.+      
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~---~~~~h~~~v~~v~~~~~g~~~~~------   72 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV---FPDVHATMITGIKTTSKGDLFTV------   72 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC---SSCSCSSCEEEEEECTTSCEEEE------
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE---EcCCCCCcEEEEEeeccceeecc------
Confidence            566778899999999999999999999999999999999998766542   11111246778889998865543      


Q ss_pred             CccccCceEEEeec
Q psy8803          97 TPQSTSGEIAVFSL  110 (111)
Q Consensus        97 ~~~~~~~~i~iw~~  110 (111)
                         +.|+.+++|++
T Consensus        73 ---~~d~~v~~~~~   83 (299)
T d1nr0a2          73 ---SWDDHLKVVPA   83 (299)
T ss_dssp             ---ETTTEEEEECS
T ss_pred             ---cceeeEEEecc
Confidence               56889999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.1e-15  Score=88.36  Aligned_cols=97  Identities=12%  Similarity=0.161  Sum_probs=71.3

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      +++.||+|++||+..++.+..+.+|...+.++.++  +++|++++.|+.|++||+............... ...+..+++
T Consensus       192 s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~  268 (342)
T d2ovrb2         192 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQF  268 (342)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEE
T ss_pred             EEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccccccccccccccee-eeceeeccc
Confidence            56789999999999999999999999999988775  569999999999999999876554321111110 122333444


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +  +..+ +++       +.|+.|+|||++
T Consensus       269 ~--~~~~-~s~-------s~Dg~i~iwd~~  288 (342)
T d2ovrb2         269 N--KNFV-ITS-------SDDGTVKLWDLK  288 (342)
T ss_dssp             C--SSEE-EEE-------ETTSEEEEEETT
T ss_pred             C--CCee-EEE-------cCCCEEEEEECC
Confidence            4  4444 556       789999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=6.2e-15  Score=89.84  Aligned_cols=100  Identities=7%  Similarity=0.079  Sum_probs=77.6

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCc-EEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEc
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR-YFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFN   82 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~   82 (111)
                      ..++.+++|+..+++.+..+.+|...|.++.|+|++. .+++++.|+.+++|+.+..+......... ....++.+++|+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~-~~~~~v~~v~~~  214 (325)
T d1pgua1         136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH-KQGSFVRDVEFS  214 (325)
T ss_dssp             CSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS-CTTCCEEEEEEC
T ss_pred             cccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccccc-CCCCccEEeeec
Confidence            4577899999999999999999999999999999876 47789999999999998755433111111 112456788999


Q ss_pred             cCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          83 ESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+...+++++       +.|+.|++||++
T Consensus       215 pd~~~~l~s~-------~~d~~i~iwd~~  236 (325)
T d1pgua1         215 PDSGEFVITV-------GSDRKISCFDGK  236 (325)
T ss_dssp             STTCCEEEEE-------ETTCCEEEEETT
T ss_pred             cccceecccc-------ccccceeeeeec
Confidence            9876666777       789999999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=6.4e-15  Score=87.78  Aligned_cols=99  Identities=16%  Similarity=0.161  Sum_probs=69.3

Q ss_pred             ccCeeeecCCCCceeeeeee-cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee-----eecceeeeecCceee
Q psy8803           5 YEEYKRLDYHTPIVETEVLT-QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK-----YSHDMKTFSWKYTQY   78 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~   78 (111)
                      .++.+++|++...+....+. .|...+.+++|+|++.+|++++.|+.+++||+.......     |...+.++.|.|...
T Consensus       139 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~  218 (287)
T d1pgua2         139 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK  218 (287)
T ss_dssp             TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred             ccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccc
Confidence            34579999998776555554 577899999999999999999999999999998765432     344444444433211


Q ss_pred             E--EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          79 S--QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        79 v--~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      .  .+.++ ..++++|       +.|+.|+|||++
T Consensus       219 ~~~~~~~~-~~~l~sg-------s~D~~i~iw~~~  245 (287)
T d1pgua2         219 GANEEEIE-EDLVATG-------SLDTNIFIYSVK  245 (287)
T ss_dssp             -----CCS-CCEEEEE-------ETTSCEEEEESS
T ss_pred             ccccccCC-CCeeEee-------cCCCeEEEEECC
Confidence            1  12222 3345677       889999999974

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=3.2e-15  Score=94.66  Aligned_cols=100  Identities=11%  Similarity=-0.006  Sum_probs=76.0

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee--eeecceeeeecCceeeEE
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV--KYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~v~   80 (111)
                      -+.||+|.|||..+++.+..+..+ ..+..++|||||+++++++.|+.+.+||+.+....  ... .............+
T Consensus        38 ~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i-~~~~~~~~~~~s~~  115 (432)
T d1qksa2          38 LRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI-KIGSEARSIETSKM  115 (432)
T ss_dssp             ETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE-ECCSEEEEEEECCS
T ss_pred             EcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEE-ecCCCCCCeEEecc
Confidence            457899999999999999999866 46899999999999999999999999999875422  110 01000011223456


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++.++++++       ..++.|++||.+
T Consensus       116 ~SpDG~~l~vs~-------~~~~~v~i~d~~  139 (432)
T d1qksa2         116 EGWEDKYAIAGA-------YWPPQYVIMDGE  139 (432)
T ss_dssp             TTCTTTEEEEEE-------EETTEEEEEETT
T ss_pred             cCCCCCEEEEEc-------CCCCeEEEEeCc
Confidence            788999988887       789999999963

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.1e-14  Score=85.80  Aligned_cols=94  Identities=17%  Similarity=0.229  Sum_probs=69.3

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      |+++.||+|+|||+.+++++..+++|.+.|.+++|  ++++|++++.|+.+++|++............      ......
T Consensus        29 ~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~------~~~~~~  100 (293)
T d1p22a2          29 VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHH------CEAVLH  100 (293)
T ss_dssp             EEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCC------CSCEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccc------cccccc
Confidence            47889999999999999999999999999999887  6789999999999999999876554321111      111122


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +.+....++. +       ..++.+.+||+
T Consensus       101 ~~~~~~~~~~-~-------~~~~~~~~~~~  122 (293)
T d1p22a2         101 LRFNNGMMVT-C-------SKDRSIAVWDM  122 (293)
T ss_dssp             EECCTTEEEE-E-------ETTSCEEEEEC
T ss_pred             ccccccceee-c-------ccccceeEeec
Confidence            3334444433 3       56777888875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=2.2e-14  Score=85.26  Aligned_cols=99  Identities=17%  Similarity=0.177  Sum_probs=80.5

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.||+|+|||+.+++.+..+.+|...|.+++|+|++..++++..++.+.+|+..........   ... -.....+.
T Consensus        33 ~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~  108 (317)
T d1vyhc1          33 VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM---HGH-DHNVSSVS  108 (317)
T ss_dssp             EEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC---CCC-SSCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccccc---ccc-cccceeee
Confidence            46788999999999999999999999999999999999999999999999999998776544321   111 13455678


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      |+|++..+++ +       +.|+.+++||++
T Consensus       109 ~~~~~~~~~~-~-------~~d~~~~~~~~~  131 (317)
T d1vyhc1         109 IMPNGDHIVS-A-------SRDKTIKMWEVQ  131 (317)
T ss_dssp             ECSSSSEEEE-E-------ETTSEEEEEETT
T ss_pred             ccCCCceEEe-e-------ccCcceeEeecc
Confidence            8888888654 4       679999999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=1.4e-14  Score=90.16  Aligned_cols=62  Identities=16%  Similarity=0.228  Sum_probs=53.0

Q ss_pred             cccccC---eeeecCCCCceeeeeee-------------cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           2 KSWYEE---YKRLDYHTPIVETEVLT-------------QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         2 ~~~~d~---~i~iw~~~~~~~~~~~~-------------~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      +++.|+   .|++||+.+++.+..+.             +|.+.|.+++|+|++++|++++.|++|++||+++++++.
T Consensus       248 sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~  325 (393)
T d1sq9a_         248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT  325 (393)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEE
Confidence            455665   49999999887777664             799999999999999999999999999999999876553

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=2e-14  Score=86.77  Aligned_cols=91  Identities=21%  Similarity=0.261  Sum_probs=70.4

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee--eecceeeeecCceeeE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK--YSHDMKTFSWKYTQYS   79 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~v   79 (111)
                      +++.|++|++||..++..+..+.+|...|.++.|+  +++|++++.|+.|++||++......  |...+        ..+
T Consensus       218 ~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~  287 (355)
T d1nexb2         218 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNL--------SAI  287 (355)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTC--------CCC
T ss_pred             cccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccceecccccCCc--------eEE
Confidence            45679999999999999999999999999999986  5799999999999999998765432  32222        223


Q ss_pred             -EEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          80 -QFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                       .+++++..+ ++|        .|+.|+|||++
T Consensus       288 ~~~~~~~~~l-~~g--------~d~~i~vwd~~  311 (355)
T d1nexb2         288 TTFYVSDNIL-VSG--------SENQFNIYNLR  311 (355)
T ss_dssp             CEEEECSSEE-EEE--------ETTEEEEEETT
T ss_pred             EEEcCCCCEE-EEE--------eCCEEEEEECC
Confidence             455566554 444        48899999975

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=9.8e-15  Score=87.51  Aligned_cols=100  Identities=13%  Similarity=0.018  Sum_probs=67.9

Q ss_pred             CcccccCeeeecCCCCcee---eeeeecccccEEEEEEcCC-CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTPIVE---TEVLTQHTHQVLHVSFSHN-GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~---~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~   76 (111)
                      |+++.||+|+|||+..+..   +....+|.+.|.+++|+|+ +.+|++|+.|+.+++|++.............   ....
T Consensus        27 ~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~---~~~~  103 (342)
T d1yfqa_          27 LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNE---ANLG  103 (342)
T ss_dssp             EEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCC---CCSC
T ss_pred             EEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccc---cccc
Confidence            4678999999999975432   3333469999999999986 5689999999999999998754433111110   0111


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ....+.+....+ +++       +.++.+++||++
T Consensus       104 ~~~~~~~~~~~~-~~~-------~~~~~~~~wd~~  130 (342)
T d1yfqa_         104 ICRICKYGDDKL-IAA-------SWDGLIEVIDPR  130 (342)
T ss_dssp             EEEEEEETTTEE-EEE-------ETTSEEEEECHH
T ss_pred             cccccccccccc-ccc-------ccccccceeecc
Confidence            123344455554 444       678999999863

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=2.2e-13  Score=83.72  Aligned_cols=99  Identities=11%  Similarity=0.080  Sum_probs=79.1

Q ss_pred             CcccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++++.||+|++||...++.+..+.+|...|.++.|++++..+++++.++.+++||.+..........     -.....+.
T Consensus       137 ~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~  211 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-----EDGVTTVA  211 (388)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-----SSCEEEEE
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccc-----cccccccc
Confidence            3578899999999999999999999999999999999999999999999999999988655442110     12233556


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +.+.+..+++++       +.|+.|++||++
T Consensus       212 ~~~~~~~~l~~~-------~~d~~i~i~~~~  235 (388)
T d1erja_         212 VSPGDGKYIAAG-------SLDRAVRVWDSE  235 (388)
T ss_dssp             ECSTTCCEEEEE-------ETTSCEEEEETT
T ss_pred             ccCCCCCeEEEE-------cCCCeEEEeecc
Confidence            667555556777       789999999864

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.9e-14  Score=83.46  Aligned_cols=105  Identities=13%  Similarity=0.122  Sum_probs=71.8

Q ss_pred             CcccccCeeeecCCCCceeeeeeec---ccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecce-eeeecCce
Q psy8803           1 KKSWYEEYKRLDYHTPIVETEVLTQ---HTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDM-KTFSWKYT   76 (111)
Q Consensus         1 ~~~~~d~~i~iw~~~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~~~   76 (111)
                      ++++.|+.|++||....+....+.+   |...+.++.+  +++++++++.|+.|++||+++++........ ....-.++
T Consensus       231 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v  308 (342)
T d2ovrb2         231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV  308 (342)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred             EEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCE
Confidence            3567899999999998877766654   5566677666  4679999999999999999987765421100 01112457


Q ss_pred             eeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          77 QYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..++|+|++. ++++|...+   +.+..|++||+.
T Consensus       309 ~~v~~s~~~~-~la~g~~dG---t~~~~l~~~Df~  339 (342)
T d2ovrb2         309 WRIRASNTKL-VCAVGSRNG---TEETKLLVLDFD  339 (342)
T ss_dssp             EEEEECSSEE-EEEEECSSS---SSCCEEEEEECC
T ss_pred             EEEEECCCCC-EEEEEeCCC---CCeeEEEEEeCC
Confidence            7889998764 456662211   124469999974

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.7e-14  Score=82.41  Aligned_cols=95  Identities=19%  Similarity=0.138  Sum_probs=61.7

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee------eecceeeeecCc
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK------YSHDMKTFSWKY   75 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~------~~~~~~~~~~~~   75 (111)
                      ++..|++|++||+.+.+.+..+.+|...+..  +++++..|++++.|+.|++||+.......      .......+ -.+
T Consensus       193 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H-~~~  269 (293)
T d1p22a2         193 SGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-SGR  269 (293)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-SSC
T ss_pred             EecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCC-CCC
Confidence            4567888888888888877777777777665  35567788888888888888864311100      00001111 134


Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      +..++|++  .+ ++++       +.|++|+|||
T Consensus       270 V~~v~~d~--~~-l~s~-------s~Dg~i~iWD  293 (293)
T d1p22a2         270 VFRLQFDE--FQ-IVSS-------SHDDTILIWD  293 (293)
T ss_dssp             CCCEEECS--SC-EEEC-------CSSSEEEEEC
T ss_pred             EEEEEEcC--CE-EEEE-------ecCCEEEEeC
Confidence            55667753  34 4666       8899999998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.43  E-value=3e-12  Score=77.60  Aligned_cols=93  Identities=6%  Similarity=-0.004  Sum_probs=70.2

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCC--CeEEEEecCCCceeeeecceeeeecCceeeEEE
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKD--GYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQF   81 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~   81 (111)
                      ..+|.|.+||...+..+. + +|...|.+++|+|||+.|++++.+  ..+++||.+++......    .. -..+..++|
T Consensus        21 ~~~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~----~~-~~~v~~~~~   93 (360)
T d1k32a3          21 VSRGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE----EN-LGNVFAMGV   93 (360)
T ss_dssp             EETTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC----CC-CCSEEEEEE
T ss_pred             EECCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee----CC-CceEEeeee
Confidence            356899999998776554 3 599999999999999988876654  37999999987655421    11 134567889


Q ss_pred             ccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          82 NESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      +|++.++++.        +.++.+.+|+++
T Consensus        94 spdg~~l~~~--------~~~~~~~~~~~~  115 (360)
T d1k32a3          94 DRNGKFAVVA--------NDRFEIMTVDLE  115 (360)
T ss_dssp             CTTSSEEEEE--------ETTSEEEEEETT
T ss_pred             ccccccccee--------cccccccccccc
Confidence            9999887654        568889999863

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1e-12  Score=79.18  Aligned_cols=100  Identities=11%  Similarity=0.062  Sum_probs=68.9

Q ss_pred             cccccCeeeecCCCCceee--eeeecccccEEEEEEcCCCcEEE-EEeCCCeEEEEecCCCcee-eeecceeeeecCcee
Q psy8803           2 KSWYEEYKRLDYHTPIVET--EVLTQHTHQVLHVSFSHNGRYFA-TCSKDGYILVWTSSYPSKV-KYSHDMKTFSWKYTQ   77 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~--~~~~~~~~~v~~i~~s~~~~~l~-s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~   77 (111)
                      ++..|++|++|++.....+  .....|.+.+..++|+|||+.|+ ++..|+.|.+|++...... ...... .. ...+.
T Consensus         9 ~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~-~~-~~~p~   86 (333)
T d1ri6a_           9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-AL-PGSLT   86 (333)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-EC-SSCCS
T ss_pred             ECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec-cc-CCCce
Confidence            4678999999998754322  22235888999999999999875 4556899999999754321 110011 11 12345


Q ss_pred             eEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          78 YSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .++|+|++.+++++.       ..++.|.+|+.
T Consensus        87 ~l~~spDg~~l~v~~-------~~~~~v~~~~~  112 (333)
T d1ri6a_          87 HISTDHQGQFVFVGS-------YNAGNVSVTRL  112 (333)
T ss_dssp             EEEECTTSSEEEEEE-------TTTTEEEEEEE
T ss_pred             EEEEcCCCCEEeecc-------cCCCceeeecc
Confidence            789999999998876       55777888764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.39  E-value=7.3e-12  Score=74.27  Aligned_cols=96  Identities=8%  Similarity=0.032  Sum_probs=74.9

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEE-EEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYF-ATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++..|++|.+||..+++.+..+.. ......++|+|||++| ++++.++.|.+||+.+......   +.. . .....++
T Consensus         7 ~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~---~~~-~-~~~~~~~   80 (301)
T d1l0qa2           7 ANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT---VPA-G-SSPQGVA   80 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE---EEC-S-SSEEEEE
T ss_pred             EECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee---eec-c-ccccccc
Confidence            456899999999999998888773 3567899999999866 5677889999999998776542   111 1 2345788


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +++++..+++++       ..+..+.+|++
T Consensus        81 ~~~~~~~~~~~~-------~~~~~~~~~~~  103 (301)
T d1l0qa2          81 VSPDGKQVYVTN-------MASSTLSVIDT  103 (301)
T ss_dssp             ECTTSSEEEEEE-------TTTTEEEEEET
T ss_pred             cccccccccccc-------cccceeeeccc
Confidence            999999888877       77888999885

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.34  E-value=2.1e-11  Score=73.82  Aligned_cols=100  Identities=6%  Similarity=0.001  Sum_probs=74.7

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCC
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDT   86 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   86 (111)
                      ..+++||...++.. .+..|...+.+++|+||+++|++++.++.+.+|++........    ..........++|+|++.
T Consensus        66 ~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~spdg~  140 (360)
T d1k32a3          66 DFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI----ERSREAMITDFTISDNSR  140 (360)
T ss_dssp             EEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE----EECSSSCCCCEEECTTSC
T ss_pred             CEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccceeee----eecccccccchhhcccee
Confidence            37999999877644 5677999999999999999999999999999999988765431    111123455788999999


Q ss_pred             EEEEeccccCC--ccccCceEEEeecC
Q psy8803          87 LLLVSGVHFGT--PQSTSGEIAVFSLQ  111 (111)
Q Consensus        87 ~~~~~~~~~~~--~~~~~~~i~iw~~~  111 (111)
                      .++.+......  ....++.+++||++
T Consensus       141 ~la~~~~~~~~~~~~~~~~~~~v~d~~  167 (360)
T d1k32a3         141 FIAYGFPLKHGETDGYVMQAIHVYDME  167 (360)
T ss_dssp             EEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             eeeeeccccccceeeccccceeeeccc
Confidence            88765433221  12457779999864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.29  E-value=2.4e-11  Score=73.15  Aligned_cols=108  Identities=6%  Similarity=-0.121  Sum_probs=75.2

Q ss_pred             cccccCeeeecCCCCceeeeeee-cccccEEEEEEcCCCcEE-EEEeCCCeEEEEecCCCceeeee---cceeeeecCce
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLT-QHTHQVLHVSFSHNGRYF-ATCSKDGYILVWTSSYPSKVKYS---HDMKTFSWKYT   76 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~---~~~~~~~~~~~   76 (111)
                      +++.|++|.+||+.+++.+..++ .+...+..++|+|||+.+ +++..++.|.+||+.+.+.....   ....... ...
T Consensus        13 ~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~-~~~   91 (346)
T d1jmxb_          13 VTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG-RSM   91 (346)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE-ECS
T ss_pred             EEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccC-Cce
Confidence            56789999999999999998887 456678899999999875 56668899999999987655411   1111111 234


Q ss_pred             eeEEEccCCCEEEEeccccCC----ccccCceEEEeec
Q psy8803          77 QYSQFNESDTLLLVSGVHFGT----PQSTSGEIAVFSL  110 (111)
Q Consensus        77 ~~v~~~~~~~~~~~~~~~~~~----~~~~~~~i~iw~~  110 (111)
                      ..++|+|++..++++..+...    ....+..+.+|+.
T Consensus        92 ~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~  129 (346)
T d1jmxb_          92 YSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST  129 (346)
T ss_dssp             SCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred             EEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEec
Confidence            578999999988776422110    1123566777764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.29  E-value=2.4e-11  Score=72.85  Aligned_cols=109  Identities=9%  Similarity=-0.035  Sum_probs=74.1

Q ss_pred             cccccCeeeecCCCCceeeeeeecc--cccEEEEEEcCCCcEE-EEEeCCCeEEEEecCCCceeeee-cceeeeecCcee
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQH--THQVLHVSFSHNGRYF-ATCSKDGYILVWTSSYPSKVKYS-HDMKTFSWKYTQ   77 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~--~~~v~~i~~s~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~   77 (111)
                      +.+.|++|++||..+++.+..+..+  ...+..++|+|||+++ ++++.++.|.+||+.+++..... ............
T Consensus         6 t~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~   85 (337)
T d1pbyb_           6 APARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF   85 (337)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred             EEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccccee
Confidence            5678999999999999988888643  4567899999999876 56778999999999987765411 111111112334


Q ss_pred             eEEEccCCCEEEEeccccCC----ccccCceEEEeec
Q psy8803          78 YSQFNESDTLLLVSGVHFGT----PQSTSGEIAVFSL  110 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~~~~~~----~~~~~~~i~iw~~  110 (111)
                      .++|+|++..++++......    ....+..+.+||.
T Consensus        86 ~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~  122 (337)
T d1pbyb_          86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA  122 (337)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET
T ss_pred             eEEEcCCCcEEEEeecCCcceeeeccccccceeeccc
Confidence            78999999988776532110    1123556777764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.22  E-value=8.4e-12  Score=78.31  Aligned_cols=105  Identities=10%  Similarity=-0.001  Sum_probs=72.1

Q ss_pred             cccCeeeecCCCC-------ceeeeeeecccccEEEEEEcCCCcEEEE-------EeCCCeEEEEecCCCceeeeeccee
Q psy8803           4 WYEEYKRLDYHTP-------IVETEVLTQHTHQVLHVSFSHNGRYFAT-------CSKDGYILVWTSSYPSKVKYSHDMK   69 (111)
Q Consensus         4 ~~d~~i~iw~~~~-------~~~~~~~~~~~~~v~~i~~s~~~~~l~s-------~~~d~~i~iw~~~~~~~~~~~~~~~   69 (111)
                      ..|+.+.+|+...       .+....+++|...+..++|+||++.|+.       ++.++++++||+.+.........+.
T Consensus       273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~  352 (426)
T d1hzua2         273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA  352 (426)
T ss_dssp             TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred             CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence            3567777766543       3677888999999999999999999984       5567899999998765432110110


Q ss_pred             ---ee--ecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          70 ---TF--SWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        70 ---~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                         .+  .-..+..++|+|++..+++++.  +. .+.++.|+|||.+
T Consensus       353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~--~~-~~~~~~i~v~D~~  396 (426)
T d1hzua2         353 EWADLGEGAKRVVQPEYNKRGDEVWFSVW--NG-KNDSSALVVVDDK  396 (426)
T ss_dssp             HHHCCCSSCCCEEEEEECSSSSEEEEEEC--CC-TTSCCEEEEEETT
T ss_pred             hhcccCCCCccEEEEEECCCCCEEEEEEe--cC-CCCCCeEEEEECC
Confidence               00  0123557899999998876531  11 1468889999964

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.16  E-value=1.2e-10  Score=73.48  Aligned_cols=102  Identities=7%  Similarity=-0.110  Sum_probs=71.7

Q ss_pred             cccccCeeeecCCCCceee-----eeeecccccEEEEEEcCCCcEE-EEEeCCCeEEEEecCCCceeee----ecceeee
Q psy8803           2 KSWYEEYKRLDYHTPIVET-----EVLTQHTHQVLHVSFSHNGRYF-ATCSKDGYILVWTSSYPSKVKY----SHDMKTF   71 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~-----~~~~~~~~~v~~i~~s~~~~~l-~s~~~d~~i~iw~~~~~~~~~~----~~~~~~~   71 (111)
                      +++.|+++++||+.+++..     .....|.+.+....|+|||++| +++..++.+.+||..+.+....    ...+...
T Consensus        78 ~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~  157 (432)
T d1qksa2          78 VIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ  157 (432)
T ss_dssp             EEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred             EEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccce
Confidence            4567999999999876532     2233577777788899999865 7788899999999998765541    1111111


Q ss_pred             ---ecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          72 ---SWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        72 ---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                         .......+.++|++..++++.       ..++.|.+||.
T Consensus       158 ~~~~~~~~~~v~~s~dg~~~~vs~-------~~~~~i~~~d~  192 (432)
T d1qksa2         158 EYHPEPRVAAILASHYRPEFIVNV-------KETGKILLVDY  192 (432)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEE-------TTTTEEEEEET
T ss_pred             eccCCCceeEEEECCCCCEEEEEE-------ccCCeEEEEEc
Confidence               112345678999998888877       67788888875

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.94  E-value=2.2e-09  Score=64.29  Aligned_cols=69  Identities=12%  Similarity=0.055  Sum_probs=53.9

Q ss_pred             EEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          33 VSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        33 i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ++|++++++|++++.++.|.+||+.+.+..... .+.. . ..+..++|+|++.++++++       ..++.|.+||++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~-~~~~-~-~~p~~l~~spDG~~l~v~~-------~~~~~v~~~d~~   70 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSC-VMPD-K-FGPGTAMMAPDNRTAYVLN-------NHYGDIYGIDLD   70 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEE-ECSS-C-CSSCEEEECTTSSEEEEEE-------TTTTEEEEEETT
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEE-EcCC-C-CCcceEEECCCCCEEEEEE-------CCCCcEEEEeCc
Confidence            468899999999999999999999988765421 1110 1 2345789999999998887       788999999974

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.91  E-value=4.5e-08  Score=57.53  Aligned_cols=96  Identities=11%  Similarity=0.019  Sum_probs=72.7

Q ss_pred             cccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEE-EEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYF-ATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ++..++.|++||+.+++.+..+..+. ....+.|++++..+ +++..+..+.+|+..+......   +..  ......++
T Consensus        49 ~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~  122 (301)
T d1l0qa2          49 ANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT---VKT--GKSPLGLA  122 (301)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE---EEC--SSSEEEEE
T ss_pred             EECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeeee---ccc--cccceEEE
Confidence            34678999999999999998888665 56889999998754 4556778899999988765542   111  12345678


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      |+|++..+++++       ..+..+.+|+.
T Consensus       123 ~~~dg~~~~~~~-------~~~~~~~~~~~  145 (301)
T d1l0qa2         123 LSPDGKKLYVTN-------NGDKTVSVINT  145 (301)
T ss_dssp             ECTTSSEEEEEE-------TTTTEEEEEET
T ss_pred             eecCCCeeeeee-------ccccceeeeec
Confidence            999999988877       67788888875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.86  E-value=9.3e-09  Score=61.32  Aligned_cols=58  Identities=10%  Similarity=-0.044  Sum_probs=50.9

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      .++.+++||+.+++.+..+. +...+.+++|+|||+.|+.++.++.|.+||.++.+...
T Consensus       258 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         258 AYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             EESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             ccccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            36889999999999888776 66778999999999999999999999999999876654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.85  E-value=2.6e-08  Score=60.06  Aligned_cols=97  Identities=10%  Similarity=0.049  Sum_probs=66.4

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEE----------eCCCeEEEEecCCCceeee----ecceee
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATC----------SKDGYILVWTSSYPSKVKY----SHDMKT   70 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~----------~~d~~i~iw~~~~~~~~~~----~~~~~~   70 (111)
                      .+..+.+||..+++.+.++..+.  ...++|+|||+.|+..          ..++.+.+||..+.+....    ......
T Consensus        26 ~~~~v~v~D~~tg~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~  103 (355)
T d2bbkh_          26 AVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL  103 (355)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred             CcCeEEEEECCCCcEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceee
Confidence            45679999999999888886543  3478999999977654          3467899999998765541    111111


Q ss_pred             eecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          71 FSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      . ......++|+|++..+++..      ...+..+.+|++
T Consensus       104 ~-~~~~~~~~~s~dg~~~~v~~------~~~~~~~~~~~~  136 (355)
T d2bbkh_         104 V-GTYPWMTSLTPDGKTLLFYQ------FSPAPAVGVVDL  136 (355)
T ss_dssp             B-SCCGGGEEECTTSSEEEEEE------CSSSCEEEEEET
T ss_pred             c-CCCCceEEEecCCCeeEEec------CCCCceeeeeec
Confidence            1 12235689999998876643      144567888875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.80  E-value=1.7e-08  Score=63.64  Aligned_cols=92  Identities=12%  Similarity=0.043  Sum_probs=66.3

Q ss_pred             ccCeeeecCCCCceeeeeee-----cccccEEEEEEcCCCcEEEEEeC---------CCeEEEEecCCCceeeeecceee
Q psy8803           5 YEEYKRLDYHTPIVETEVLT-----QHTHQVLHVSFSHNGRYFATCSK---------DGYILVWTSSYPSKVKYSHDMKT   70 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~-----~~~~~v~~i~~s~~~~~l~s~~~---------d~~i~iw~~~~~~~~~~~~~~~~   70 (111)
                      .|+.+.+||+.+++....+.     .|...|..+.||||++.|+.++.         ++.+.+||+.++.....    ..
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l----~~  109 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE----ER  109 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS----SC
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccccc----cc
Confidence            47789999999887665443     44578999999999999888753         45678999988764431    11


Q ss_pred             eecCceeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          71 FSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .. .....+.|+|++..++..         .++.+.+|++
T Consensus       110 ~~-~~~~~~~~SPDG~~ia~~---------~~~~l~~~~~  139 (470)
T d2bgra1         110 IP-NNTQWVTWSPVGHKLAYV---------WNNDIYVKIE  139 (470)
T ss_dssp             CC-TTEEEEEECSSTTCEEEE---------ETTEEEEESS
T ss_pred             CC-ccccccccccCcceeeEe---------ecccceEEEC
Confidence            11 345567899999998773         3666777764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.71  E-value=9.4e-08  Score=58.41  Aligned_cols=95  Identities=15%  Similarity=-0.035  Sum_probs=66.0

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe----------CCCeEEEEecCCCceeeee----cceeeee
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS----------KDGYILVWTSSYPSKVKYS----HDMKTFS   72 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~----~~~~~~~   72 (111)
                      ..+.++|..+++.+.++..+...  .+.|+|||+.|+..+          .++.|.+||..+.+.....    ...... 
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~-  122 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV-  122 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB-
T ss_pred             ceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc-
Confidence            34666788888888887765544  588999999887754          3677999999887655421    001111 


Q ss_pred             cCceeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          73 WKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        73 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ......++|+|++++++++.       ..++.+.+||+.
T Consensus       123 g~~p~~~a~SpDGk~l~va~-------~~~~~v~~~d~~  154 (368)
T d1mdah_         123 GPRVHIIGNCASSACLLFFL-------FGSSAAAGLSVP  154 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEE-------CSSSCEEEEEET
T ss_pred             cCCccceEECCCCCEEEEEe-------CCCCeEEEEECC
Confidence            11234689999999988765       557889999863

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.65  E-value=4.2e-07  Score=55.13  Aligned_cols=55  Identities=13%  Similarity=-0.041  Sum_probs=43.4

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe----------CCCeEEEEecCCCce
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS----------KDGYILVWTSSYPSK   61 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~----------~d~~i~iw~~~~~~~   61 (111)
                      .++.+.+||..+++.+..+..+..  ..+.|+|||+.|+.++          .++.+.+||..+.+.
T Consensus        45 ~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~  109 (373)
T d2madh_          45 AIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP  109 (373)
T ss_pred             CCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcE
Confidence            346789999999998888875543  3789999999988874          357899999987654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=2.8e-07  Score=54.81  Aligned_cols=99  Identities=14%  Similarity=0.081  Sum_probs=65.7

Q ss_pred             ccccCeeeecCCCCceeeeeee---cccccEEEEEEcCCCcEEEEEeC-CCeEEEEecCCCceeeeecceeeeecCceee
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLT---QHTHQVLHVSFSHNGRYFATCSK-DGYILVWTSSYPSKVKYSHDMKTFSWKYTQY   78 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~---~~~~~v~~i~~s~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   78 (111)
                      +..|+.|++|++........+.   .+...+..++|+|||+.|+.++. ++.+.+|+..............  ....+..
T Consensus        55 ~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~  132 (333)
T d1ri6a_          55 VRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHS  132 (333)
T ss_dssp             ETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCC
T ss_pred             ECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccC--CCccceE
Confidence            4568999999997653322222   24456778999999998888874 6788999887654333111010  1123456


Q ss_pred             EEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          79 SQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +.++|++..++...       ..+..|.+|+.
T Consensus       133 v~~s~d~~~~~~~~-------~~~~~i~~~~~  157 (333)
T d1ri6a_         133 ANISPDNRTLWVPA-------LKQDRICLFTV  157 (333)
T ss_dssp             CEECTTSSEEEEEE-------GGGTEEEEEEE
T ss_pred             EEeeecceeeeccc-------cccceeeEEEe
Confidence            78999999887776       55667888774

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.57  E-value=2.5e-07  Score=56.15  Aligned_cols=60  Identities=8%  Similarity=0.038  Sum_probs=50.5

Q ss_pred             ccccCeeeecCCCCceeeeeeecccccEEEEEEcCCCc--EEEEEeCCCeEEEEecCCCceee
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR--YFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~--~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      ...++.+.+||..+++.+..+. +...+..++|+|||+  ++++++.|+.|++||+.+++...
T Consensus       294 ~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~  355 (373)
T d2madh_         294 HAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             ecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            3456789999999998888776 667889999999987  45788899999999999988765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.40  E-value=6.2e-07  Score=53.88  Aligned_cols=57  Identities=7%  Similarity=0.132  Sum_probs=47.2

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCc--EEEEEeCCCeEEEEecCCCceee
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR--YFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~--~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      +..+.+||..+++.+..+. +...+.+++|+|||+  ++++++.|+.|.+||.++++...
T Consensus       279 ~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~  337 (355)
T d2bbkh_         279 SRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR  337 (355)
T ss_dssp             EEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             CCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEE
Confidence            3578999999998887776 445688999999987  46677789999999999987765

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.32  E-value=1e-06  Score=53.69  Aligned_cols=61  Identities=5%  Similarity=-0.094  Sum_probs=46.7

Q ss_pred             ccccCeeeecCCCCceeeeeeecccc-------cEEEEEEcCCCcEEEEEe-CCCeEEEEecCCCceee
Q psy8803           3 SWYEEYKRLDYHTPIVETEVLTQHTH-------QVLHVSFSHNGRYFATCS-KDGYILVWTSSYPSKVK   63 (111)
Q Consensus         3 ~~~d~~i~iw~~~~~~~~~~~~~~~~-------~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~   63 (111)
                      +..|++|++||..+++.+..+..+..       ....++|+|||++++.+. .++.+.+||+...+...
T Consensus        92 g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~  160 (368)
T d1mdah_          92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ  160 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred             cccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeE
Confidence            45688999999999988877764432       223589999999887765 57899999999876554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.29  E-value=1.8e-06  Score=54.21  Aligned_cols=87  Identities=10%  Similarity=-0.023  Sum_probs=61.1

Q ss_pred             cccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeee-----cceeee-------
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYS-----HDMKTF-------   71 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-----~~~~~~-------   71 (111)
                      +.++.+.+||+..++ +..+..+...+....|||||+.|+... +..+.+|+...+......     ..+...       
T Consensus        89 s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~  166 (470)
T d2bgra1          89 SYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (470)
T ss_dssp             CEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             ccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeee
Confidence            456788899999776 455778889999999999999999865 568999998876544310     000000       


Q ss_pred             --ecCceeeEEEccCCCEEEEec
Q psy8803          72 --SWKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        72 --~~~~~~~v~~~~~~~~~~~~~   92 (111)
                        .......+.|+|++..++...
T Consensus       167 ~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         167 EEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEE
T ss_pred             eeecCCccccEECCCCCccceeE
Confidence              001234577999999887765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.54  E-value=0.0017  Score=37.96  Aligned_cols=95  Identities=7%  Similarity=0.014  Sum_probs=58.4

Q ss_pred             cccCeeeecCCCCceeeeeee--cccccEEEEEEcCCCcEEEEEe-CCCeEEEEecCCCceeeeecceeeeecCceeeEE
Q psy8803           4 WYEEYKRLDYHTPIVETEVLT--QHTHQVLHVSFSHNGRYFATCS-KDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQ   80 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (111)
                      ...+.|+++|.. ++.+..+.  +.......|+++++|+++++-. .++.|.+++... .......  ..........++
T Consensus       175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G-~~~~~~~--~~~~~~~p~~va  250 (279)
T d1q7fa_         175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISALE--SKVKHAQCFDVA  250 (279)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEEEE--ESSCCSCEEEEE
T ss_pred             ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC-CEEEEEe--CCCCCCCEeEEE
Confidence            345667777765 55555552  3455678899999999887754 456799998653 3222100  011112345788


Q ss_pred             EccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          81 FNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ..|++..+++         +.++.|++|..+
T Consensus       251 v~~dG~l~V~---------~~n~~v~~fr~~  272 (279)
T d1q7fa_         251 LMDDGSVVLA---------SKDYRLYIYRYV  272 (279)
T ss_dssp             EETTTEEEEE---------ETTTEEEEEECS
T ss_pred             EeCCCcEEEE---------eCCCeEEEEEee
Confidence            8888764433         457789999753

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.50  E-value=0.0015  Score=39.76  Aligned_cols=74  Identities=5%  Similarity=0.064  Sum_probs=49.7

Q ss_pred             cEEEEEEcCCCcEEEEEeC-CCeEEEEecCCC-ceeeeecceeee-ecCceeeEEEccCCCEEEEeccccCCccccCceE
Q psy8803          29 QVLHVSFSHNGRYFATCSK-DGYILVWTSSYP-SKVKYSHDMKTF-SWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEI  105 (111)
Q Consensus        29 ~v~~i~~s~~~~~l~s~~~-d~~i~iw~~~~~-~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i  105 (111)
                      .+.++.|+|||++++.+.. ...+.+|+.... ..... ...... .-.....++|+|++.++.++.       ..+++|
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~-~~~~~~~~g~gPr~i~f~pdg~~~yv~~-------e~~~~V  217 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV-GSVDAPDPGDHPRWVAMHPTGNYLYALM-------EAGNRI  217 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE-EEEECSSTTCCEEEEEECTTSSEEEEEE-------TTTTEE
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeec-cceeecCCCCceEEEEECCCCceEEEec-------cCCCEE
Confidence            4678999999997777754 347888876542 22221 111111 113467899999999988887       678889


Q ss_pred             EEeec
Q psy8803         106 AVFSL  110 (111)
Q Consensus       106 ~iw~~  110 (111)
                      .+|++
T Consensus       218 ~v~~~  222 (365)
T d1jofa_         218 CEYVI  222 (365)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88875

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.35  E-value=0.0029  Score=38.47  Aligned_cols=75  Identities=13%  Similarity=0.198  Sum_probs=45.8

Q ss_pred             cEEEEEEcCCCcEEEEEeC------CCeEEEEecCCCceeeeecceee--eecCceeeEEEcc-CCCEEEEeccccCCcc
Q psy8803          29 QVLHVSFSHNGRYFATCSK------DGYILVWTSSYPSKVKYSHDMKT--FSWKYTQYSQFNE-SDTLLLVSGVHFGTPQ   99 (111)
Q Consensus        29 ~v~~i~~s~~~~~l~s~~~------d~~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~   99 (111)
                      ....+.++|||+.+..+..      ...|..|++...........+..  ..-.....++++| ++.+++++.       
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~-------  328 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD-------  328 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC-------
T ss_pred             CccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEe-------
Confidence            4567899999998777632      22377777654322211000000  0012345688998 788888887       


Q ss_pred             ccCceEEEeec
Q psy8803         100 STSGEIAVFSL  110 (111)
Q Consensus       100 ~~~~~i~iw~~  110 (111)
                      ..++.|.+|++
T Consensus       329 ~~s~~v~v~~~  339 (365)
T d1jofa_         329 DQEGWLEIYRW  339 (365)
T ss_dssp             SSSCEEEEEEE
T ss_pred             CCCCeEEEEEE
Confidence            78889999975

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.22  E-value=0.0059  Score=35.89  Aligned_cols=69  Identities=14%  Similarity=0.140  Sum_probs=46.3

Q ss_pred             CCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEE
Q psy8803          15 TPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLV   90 (111)
Q Consensus        15 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   90 (111)
                      .+.+.+..+. -...+..++++|||+++++...+++|..++.........     ... .....++|.+++..+++
T Consensus        16 ~~~~v~~~~p-~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~-----~~~-~~~~gla~~~dG~l~v~   84 (302)
T d2p4oa1          16 APAKIITSFP-VNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA-----TVE-GKVSGLAFTSNGDLVAT   84 (302)
T ss_dssp             CCEEEEEEEC-TTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE-----ECS-SEEEEEEECTTSCEEEE
T ss_pred             CcccEEEECC-CCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEE-----cCC-CCcceEEEcCCCCeEEE
Confidence            3344444553 223678899999999999999999998888665433221     111 34567899999886554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.03  E-value=0.0006  Score=42.93  Aligned_cols=86  Identities=8%  Similarity=-0.023  Sum_probs=56.8

Q ss_pred             cccccCeeeecCCCCceeeeeeec------------------------------ccccEEEEEEcCCCcEEEEE-eCCCe
Q psy8803           2 KSWYEEYKRLDYHTPIVETEVLTQ------------------------------HTHQVLHVSFSHNGRYFATC-SKDGY   50 (111)
Q Consensus         2 ~~~~d~~i~iw~~~~~~~~~~~~~------------------------------~~~~v~~i~~s~~~~~l~s~-~~d~~   50 (111)
                      ++..+|.|++|++.+++.+..+.-                              |.-........|||+++... ..+.+
T Consensus        16 Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~r   95 (441)
T d1qnia2          16 SGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTR   95 (441)
T ss_dssp             ECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTE
T ss_pred             eCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCE
Confidence            567899999999988876665421                              22234555568899877554 56789


Q ss_pred             EEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEE
Q psy8803          51 ILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLV   90 (111)
Q Consensus        51 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   90 (111)
                      +.++|+++.++..-. .+..  ......++|+|+++...+
T Consensus        96 VavIDl~t~k~~~ii-~iP~--g~gphgi~~spdg~t~YV  132 (441)
T d1qnia2          96 VARIRLDIMKTDKIT-HIPN--VQAIHGLRLQKVPKTNYV  132 (441)
T ss_dssp             EEEEETTTTEEEEEE-ECTT--CCCEEEEEECCSSBCCEE
T ss_pred             EEEEECCCCcEeeEE-ecCC--CCCccceEEeccCCEEEE
Confidence            999999987665411 1110  134567899998875433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.02  E-value=0.0069  Score=38.05  Aligned_cols=29  Identities=10%  Similarity=0.230  Sum_probs=25.6

Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ...++++|++.++++++       ..+++|.+||++
T Consensus       260 PhGv~vSPDGkyl~~~~-------~~~~tvsv~d~~  288 (441)
T d1qnia2         260 PHGLNTSPDGKYFIANG-------KLSPTVSVIAID  288 (441)
T ss_dssp             CCCEEECTTSCEEEEEC-------TTSSBEEEEEGG
T ss_pred             ccCceECCCCCEEEEeC-------CcCCcEEEEEee
Confidence            45799999999999998       889999999973

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.88  E-value=0.012  Score=34.99  Aligned_cols=70  Identities=9%  Similarity=0.125  Sum_probs=48.6

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEeccccCCccccCceEEEee
Q psy8803          30 VLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        30 v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      .-.+++.++|+++++....+.|.+||.+.......   +. ......+.++|.|+...++++.       +..+.|...+
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~---i~-~p~~~~t~~afg~d~~~lyVt~-------~~~g~i~~~~  296 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMR---IR-CPFEKPSNLHFKPQTKTIFVTE-------HENNAVWKFE  296 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEE---EE-CSSSCEEEEEECTTSSEEEEEE-------TTTTEEEEEE
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEE---EE-CCCCCEEEEEEeCCCCEEEEEE-------CCCCcEEEEE
Confidence            44688999999998887788999999876543321   11 1112355789999888777776       5667777666


Q ss_pred             c
Q psy8803         110 L  110 (111)
Q Consensus       110 ~  110 (111)
                      +
T Consensus       297 ~  297 (314)
T d1pjxa_         297 W  297 (314)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.78  E-value=0.011  Score=34.61  Aligned_cols=81  Identities=12%  Similarity=-0.068  Sum_probs=47.4

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCce-eeeecceeeeecCceeeEEEcc
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSK-VKYSHDMKTFSWKYTQYSQFNE   83 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~   83 (111)
                      .++.|.-++.. ++ ...+......+.+++|+++|+++++...++.+..++...... ........  .....+.+++.+
T Consensus        47 ~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~n~i~~~~  122 (302)
T d2p4oa1          47 EVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP--DAIFLNGITPLS  122 (302)
T ss_dssp             TTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT--TCSCEEEEEESS
T ss_pred             CCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccC--CccccceeEEcc
Confidence            35555555544 22 223344567889999999999999988888888777643211 11000000  113356677787


Q ss_pred             CCCEEE
Q psy8803          84 SDTLLL   89 (111)
Q Consensus        84 ~~~~~~   89 (111)
                      ++..++
T Consensus       123 ~g~~~v  128 (302)
T d2p4oa1         123 DTQYLT  128 (302)
T ss_dssp             SSEEEE
T ss_pred             CCCEEe
Confidence            775543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.76  E-value=0.015  Score=33.01  Aligned_cols=86  Identities=9%  Similarity=0.074  Sum_probs=50.8

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEe-C---CC--eEEEEecCCCceeeeec-ceeeeec-Ccee
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCS-K---DG--YILVWTSSYPSKVKYSH-DMKTFSW-KYTQ   77 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~---d~--~i~iw~~~~~~~~~~~~-~~~~~~~-~~~~   77 (111)
                      ++-|-+.|+..++. ..|..+.+.+....|||||+.|+-.. .   +.  .|.+.+...+....... ....... ....
T Consensus        20 ~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~   98 (281)
T d1k32a2          20 CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTD   98 (281)
T ss_dssp             TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSE
T ss_pred             CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcccccc
Confidence            34466667776654 45666777889999999999887543 1   22  35666666654433111 0010000 1224


Q ss_pred             eEEEccCCCEEEEec
Q psy8803          78 YSQFNESDTLLLVSG   92 (111)
Q Consensus        78 ~v~~~~~~~~~~~~~   92 (111)
                      ..+|+|++..++.+.
T Consensus        99 ~~~~spdg~~l~~~~  113 (281)
T d1k32a2          99 VAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEEECTTCCEEEEEC
T ss_pred             ccccCCCCCEEEEEE
Confidence            567899998887764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0051  Score=38.68  Aligned_cols=86  Identities=13%  Similarity=0.061  Sum_probs=51.1

Q ss_pred             cccCeeeecCCCCceeeeeeec---ccccEEEEEEcCCCcEEEEEe---------CCCeEEEEecCCCceeeeecceeee
Q psy8803           4 WYEEYKRLDYHTPIVETEVLTQ---HTHQVLHVSFSHNGRYFATCS---------KDGYILVWTSSYPSKVKYSHDMKTF   71 (111)
Q Consensus         4 ~~d~~i~iw~~~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~s~~---------~d~~i~iw~~~~~~~~~~~~~~~~~   71 (111)
                      ..||.+.+||+.+++...-+..   ....+....||||++.++-..         ..+.+.++|+.++....-....  .
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~--~  111 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE--V  111 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT--C
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCcc--C
Confidence            3577899999987764333332   223566778999999876653         2456788888775543311000  0


Q ss_pred             ecCceeeEEEccCCCEEEEe
Q psy8803          72 SWKYTQYSQFNESDTLLLVS   91 (111)
Q Consensus        72 ~~~~~~~v~~~~~~~~~~~~   91 (111)
                      ....++...|+|++..++..
T Consensus       112 ~~~~l~~~~wSPDG~~iafv  131 (465)
T d1xfda1         112 SNAKLQYAGWGPKGQQLIFI  131 (465)
T ss_dssp             CSCCCSBCCBCSSTTCEEEE
T ss_pred             CccccceeeeccCCceEEEE
Confidence            01223345678888777653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.036  Score=31.36  Aligned_cols=79  Identities=11%  Similarity=0.087  Sum_probs=46.7

Q ss_pred             eeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeC-CC--eEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           8 YKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSK-DG--YILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      .|.|.|.. |.....+..+...+..-+|||||+.||-... ++  .+.+.+........... .    ........|+|+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~spd   93 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-F----PRHNGAPAFSPD   93 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-C----SSCEEEEEECTT
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee-e----ecccccceecCC
Confidence            46776766 4444444445677888999999999886543 22  35555555544322110 0    022234567888


Q ss_pred             CCEEEEec
Q psy8803          85 DTLLLVSG   92 (111)
Q Consensus        85 ~~~~~~~~   92 (111)
                      +..++...
T Consensus        94 g~~i~~~~  101 (269)
T d2hqsa1          94 GSKLAFAL  101 (269)
T ss_dssp             SSEEEEEE
T ss_pred             CCeeeEee
Confidence            88877654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.11  E-value=0.045  Score=31.25  Aligned_cols=93  Identities=4%  Similarity=-0.026  Sum_probs=56.1

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      .++.|..++...................++++++++++++...++.+..++.........    ....+.....+++.++
T Consensus       159 ~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~----~~~~~~~P~~i~~d~~  234 (260)
T d1rwia_         159 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL----PFTGLNTPLAVAVDSD  234 (260)
T ss_dssp             GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEEC----CCCSCCCEEEEEECTT
T ss_pred             ccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEE----ccCCCCCeEEEEEeCC
Confidence            345566666654433222223445668899999999999988888888887765432221    1111234567889988


Q ss_pred             CCEEEEeccccCCccccCceEEEee
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFS  109 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~  109 (111)
                      +..+ ++-       ...+.|+..+
T Consensus       235 g~l~-vad-------~~~~rI~~i~  251 (260)
T d1rwia_         235 RTVY-VAD-------RGNDRVVKLT  251 (260)
T ss_dssp             CCEE-EEE-------GGGTEEEEEC
T ss_pred             CCEE-EEE-------CCCCEEEEEe
Confidence            7654 443       3455565543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.012  Score=33.50  Aligned_cols=38  Identities=16%  Similarity=0.051  Sum_probs=26.0

Q ss_pred             ccccEEEEEEcCCCcEEEEEe---CCCeEEEEecCCCceee
Q psy8803          26 HTHQVLHVSFSHNGRYFATCS---KDGYILVWTSSYPSKVK   63 (111)
Q Consensus        26 ~~~~v~~i~~s~~~~~l~s~~---~d~~i~iw~~~~~~~~~   63 (111)
                      +........|+|||+.|+-.+   ....|.++++.......
T Consensus       212 ~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~  252 (269)
T d2hqsa1         212 STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR  252 (269)
T ss_dssp             CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred             cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            455667788999999876443   23467888887765443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=95.69  E-value=0.022  Score=33.75  Aligned_cols=54  Identities=6%  Similarity=-0.088  Sum_probs=41.5

Q ss_pred             ccCeeeecCCCCceeeeeeecccccEEEEEEcCCCc-EEEEEeCCCeEEEEecCC
Q psy8803           5 YEEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGR-YFATCSKDGYILVWTSSY   58 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~i~iw~~~~   58 (111)
                      ..+.|..+|...++.+..+........+++|.+|++ ++++.+.++.|...++..
T Consensus       245 ~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            457788888887776666665566788999999975 678878888888887754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.24  E-value=0.12  Score=29.78  Aligned_cols=63  Identities=11%  Similarity=0.066  Sum_probs=41.1

Q ss_pred             cccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEE
Q psy8803          25 QHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLV   90 (111)
Q Consensus        25 ~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   90 (111)
                      .+......+++.++++++++....+.|.+++............   ........+++.+++..+++
T Consensus       154 ~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~---g~~~~P~giavD~~G~i~Va  216 (279)
T d1q7fa_         154 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGE---GITNYPIGVGINSNGEILIA  216 (279)
T ss_dssp             TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCT---TTSCSEEEEEECTTCCEEEE
T ss_pred             ccccccceeeeccceeEEeeeccccceeeeecCCceeeeeccc---ccccCCcccccccCCeEEEE
Confidence            3456678889999999999988889999998765432221000   01123456778888775543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.023  Score=35.63  Aligned_cols=87  Identities=10%  Similarity=0.036  Sum_probs=50.3

Q ss_pred             ccCeeeecCCCCceeee--eeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeee--c---ceeeee--c--
Q psy8803           5 YEEYKRLDYHTPIVETE--VLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYS--H---DMKTFS--W--   73 (111)
Q Consensus         5 ~d~~i~iw~~~~~~~~~--~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~---~~~~~~--~--   73 (111)
                      +.+...++|+.++....  ........+....|||||+.+|-.. +..+.+.+.......+..  +   .+....  |  
T Consensus        89 ~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vy  167 (465)
T d1xfda1          89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY  167 (465)
T ss_dssp             CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred             ccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhh
Confidence            45667778887665322  1222344556688999999887766 457888877654433211  0   111000  0  


Q ss_pred             -----CceeeEEEccCCCEEEEec
Q psy8803          74 -----KYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        74 -----~~~~~v~~~~~~~~~~~~~   92 (111)
                           ..-..+-|+|++..|+..-
T Consensus       168 eee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         168 EEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             HHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             hhhhccccceEEECCCCCeEEEEE
Confidence                 0012456899999988764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.48  E-value=0.23  Score=29.48  Aligned_cols=97  Identities=20%  Similarity=0.110  Sum_probs=52.3

Q ss_pred             eeecCCCCcee--eee-eecccccEEEEEEcCCCcEEEEEeCC-CeEEEEecCCCceeeeecceeeeecCceeeEEEccC
Q psy8803           9 KRLDYHTPIVE--TEV-LTQHTHQVLHVSFSHNGRYFATCSKD-GYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNES   84 (111)
Q Consensus         9 i~iw~~~~~~~--~~~-~~~~~~~v~~i~~s~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   84 (111)
                      +.+||..+++-  ... ...+........+.+++++++.|+.+ ..+.+||..+..-... ..+....+  ....+..++
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~-~~~~~~r~--~~~~~~~~d  130 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVARG--YQSSATMSD  130 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSSCCS--SCEEEECTT
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccccc-cccccccc--ccceeeecC
Confidence            56788876632  111 12343444566788999999998755 5789999876432221 01111111  123455556


Q ss_pred             CCEEEEeccccCCccccCceEEEeec
Q psy8803          85 DTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      +..++..|.....  ..-+.+.+||.
T Consensus       131 G~v~v~GG~~~~~--~~~~~v~~yd~  154 (387)
T d1k3ia3         131 GRVFTIGGSWSGG--VFEKNGEVYSP  154 (387)
T ss_dssp             SCEEEECCCCCSS--SCCCCEEEEET
T ss_pred             Cceeeeccccccc--cccceeeeecC
Confidence            6666554422222  22345777775

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.11  E-value=0.35  Score=27.02  Aligned_cols=52  Identities=8%  Similarity=0.026  Sum_probs=33.1

Q ss_pred             EcCC--CcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEec
Q psy8803          35 FSHN--GRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSG   92 (111)
Q Consensus        35 ~s~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   92 (111)
                      .+||  |+.++-.+. +.|.+.|+..+....-...-     ......+|+|++..|+.+.
T Consensus         6 ~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~~Lt~~~-----~~~~~p~~SPDG~~iaf~~   59 (281)
T d1k32a2           6 LNPDIHGDRIIFVCC-DDLWEHDLKSGSTRKIVSNL-----GVINNARFFPDGRKIAIRV   59 (281)
T ss_dssp             EEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSS-----SEEEEEEECTTSSEEEEEE
T ss_pred             cCCCCCCCEEEEEeC-CcEEEEECCCCCEEEEecCC-----CcccCEEECCCCCEEEEEE
Confidence            4787  887776553 56888888876654311110     1233467899999988765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.22  E-value=0.77  Score=28.78  Aligned_cols=29  Identities=17%  Similarity=0.259  Sum_probs=25.0

Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeecC
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSLQ  111 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~  111 (111)
                      ...+..+|++.++++++       --+.++.|.|++
T Consensus       277 PHGV~vSPDGKyi~VaG-------KLs~tVSViD~~  305 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAG-------KLSPTVTVLDVT  305 (459)
T ss_dssp             CCCEEECTTSSEEEEEC-------TTSSBEEEEEGG
T ss_pred             CCceEECCCCCEEEEeC-------CcCCcEEEEEeh
Confidence            45789999999999998       788889999874

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.28  E-value=0.77  Score=26.83  Aligned_cols=28  Identities=14%  Similarity=0.271  Sum_probs=19.8

Q ss_pred             eeeEEEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          76 TQYSQFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      .+.++|+|++..+.++-       ...+.|..+++
T Consensus       179 pnGia~s~dg~~lyvad-------~~~~~I~~~d~  206 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTE-------TTANRLHRIAL  206 (319)
T ss_dssp             EEEEEECTTSSEEEEEE-------GGGTEEEEEEE
T ss_pred             eeeeeeccccceEEEec-------ccCCceEEEEE
Confidence            35688888888776665       55667777764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.75  E-value=0.76  Score=25.87  Aligned_cols=58  Identities=10%  Similarity=0.137  Sum_probs=37.9

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEE
Q psy8803          28 HQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLL   89 (111)
Q Consensus        28 ~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   89 (111)
                      .....++++++++++++...+..|..++..........  ..  .......+++.+++..++
T Consensus       140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~--~~--~~~~p~gi~~d~~g~l~v  197 (260)
T d1rwia_         140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP--FT--DITAPWGIAVDEAGTVYV  197 (260)
T ss_dssp             CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC--CS--SCCSEEEEEECTTCCEEE
T ss_pred             CCcceeeecCCCCEeeeccccccccccccccceeeeee--cc--ccCCCccceeeeeeeeee
Confidence            34568899999999888888889999998764433211  01  112345677777765443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.53  E-value=1.1  Score=26.05  Aligned_cols=61  Identities=11%  Similarity=0.118  Sum_probs=41.5

Q ss_pred             cccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEe
Q psy8803          27 THQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVS   91 (111)
Q Consensus        27 ~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   91 (111)
                      ...+..+.|+++|+++++-..+++|..++..........   .... .....+++.+++..+++.
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~---~~~~-~~p~gla~~~dG~l~va~   99 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---VSHK-ANPAAIKIHKDGRLFVCY   99 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE---ECSS-SSEEEEEECTTSCEEEEE
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE---eCCC-CCeeEEEECCCCCEEEEe
Confidence            344578999999998888878889999988775443311   1111 235678889888766553

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.09  E-value=2.8  Score=26.93  Aligned_cols=56  Identities=11%  Similarity=-0.070  Sum_probs=38.2

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      |.+.-||..+++.+-... +......-.++..+.+++.+..|+.++.+|.++++.+=
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW  508 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW  508 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEee
Confidence            678888988887655443 22222211223357788889999999999999988763

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.90  E-value=3.1  Score=25.27  Aligned_cols=60  Identities=13%  Similarity=0.118  Sum_probs=38.7

Q ss_pred             cEEEEEEcCCCcEEEEE-----eCCCeEEEEecCCCceeeeecceeeeecCceeeEEEccCCCEEEEecc
Q psy8803          29 QVLHVSFSHNGRYFATC-----SKDGYILVWTSSYPSKVKYSHDMKTFSWKYTQYSQFNESDTLLLVSGV   93 (111)
Q Consensus        29 ~v~~i~~s~~~~~l~s~-----~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   93 (111)
                      .+...++|||++.++-+     ++...++++|+.+++....  .+....   ...++|.+++..++.+..
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~~~~---~~~~~W~~D~~~~~Y~~~  190 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLERVK---FSCMAWTHDGKGMFYNAY  190 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEEEC---SCCEEECTTSSEEEEEEC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--cccccc---ccceEEcCCCCEEEEEEe
Confidence            34566789999877743     2334799999999876542  122111   135778888888877653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=83.28  E-value=1.3  Score=28.29  Aligned_cols=56  Identities=7%  Similarity=-0.044  Sum_probs=38.0

Q ss_pred             CeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           7 EYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         7 ~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      |.+.-+|..+++.+-..+... ....=..+-.+.+++.+..|+.++.+|.++++.+-
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW  512 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW  512 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeE
Confidence            567778888887766554221 11111223367788889999999999999987763

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.99  E-value=3.8  Score=26.12  Aligned_cols=57  Identities=12%  Similarity=0.023  Sum_probs=39.5

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCceee
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKVK   63 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~   63 (111)
                      .|.+.=+|+.+++.+-....+. .+..-..+..+.+++.++.|+.++.+|.++++.+=
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW  521 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW  521 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeE
Confidence            3667778888887766655322 22211233457787889999999999999988763

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.60  E-value=4.2  Score=25.89  Aligned_cols=56  Identities=11%  Similarity=-0.044  Sum_probs=37.1

Q ss_pred             cCeeeecCCCCceeeeeeecccccEEEEEEcCCCcEEEEEeCCCeEEEEecCCCcee
Q psy8803           6 EEYKRLDYHTPIVETEVLTQHTHQVLHVSFSHNGRYFATCSKDGYILVWTSSYPSKV   62 (111)
Q Consensus         6 d~~i~iw~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~i~iw~~~~~~~~   62 (111)
                      .|.+.-+|.++++.+-+...- .....-..+-.+.+++.++.|+.++.+|.++++.+
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence            467888888888876554311 11111112224667778999999999999998766

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=81.02  E-value=3.4  Score=23.72  Aligned_cols=91  Identities=10%  Similarity=-0.056  Sum_probs=52.3

Q ss_pred             eeeecCCCCceeeeeee--c--ccccEEEEEEcCCCcEEEEEeC----CCeEEEEecCCCceeeeecceeeeecCceeeE
Q psy8803           8 YKRLDYHTPIVETEVLT--Q--HTHQVLHVSFSHNGRYFATCSK----DGYILVWTSSYPSKVKYSHDMKTFSWKYTQYS   79 (111)
Q Consensus         8 ~i~iw~~~~~~~~~~~~--~--~~~~v~~i~~s~~~~~l~s~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v   79 (111)
                      .+.++|..+++......  .  ....+..+...|+|++.++...    .+.-.+|.+..+.....    . ......+.+
T Consensus        79 gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~----~-~~~~~~Ng~  153 (295)
T d2ghsa1          79 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKL----F-ADISIPNSI  153 (295)
T ss_dssp             EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEE----E-EEESSEEEE
T ss_pred             ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEE----e-eccCCccee
Confidence            46667777665332211  1  1235778889999987776532    22344555544433221    1 112345688


Q ss_pred             EEccCCCEEEEeccccCCccccCceEEEeec
Q psy8803          80 QFNESDTLLLVSGVHFGTPQSTSGEIAVFSL  110 (111)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~  110 (111)
                      ++++++..++.+-       +..+.|..+++
T Consensus       154 ~~s~d~~~l~~~d-------t~~~~I~~~~~  177 (295)
T d2ghsa1         154 CFSPDGTTGYFVD-------TKVNRLMRVPL  177 (295)
T ss_dssp             EECTTSCEEEEEE-------TTTCEEEEEEB
T ss_pred             eecCCCceEEEee-------cccceeeEeee
Confidence            9999998887766       55666666654